BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] (731 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] gi|254040849|gb|ACT57645.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 1509 bits (3907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 731/731 (100%), Positives = 731/731 (100%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH Sbjct: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK Sbjct: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN Sbjct: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV Sbjct: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID Sbjct: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP Sbjct: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE Sbjct: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA Sbjct: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD Sbjct: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR Sbjct: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK Sbjct: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ Sbjct: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 Query: 721 YNTTLRIHDDD 731 YNTTLRIHDDD Sbjct: 721 YNTTLRIHDDD 731 >gi|315122567|ref|YP_004063056.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495969|gb|ADR52568.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 739 Score = 999 bits (2583), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/725 (67%), Positives = 582/725 (80%), Gaps = 5/725 (0%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M R+ IPIE LS EQA+KELS L+ EISYHDD YYQ+S+P ILD EYD LK RCDAIA Sbjct: 1 MANRKFIPIEELSPEQAKKELSFLQHEISYHDDLYYQHSQPKILDFEYDQLKERCDAIAR 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFP+ A D NGPLNKIGGE N SLFK+THS P SLEK IED+ F+T+IYR +K Sbjct: 61 AFPEFASLADSNGPLNKIGGEKNFSLFKITHSPPMRSLEKSHQIEDINYFMTKIYRDLKK 120 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 NSI FTLEPKIDG ++IRYE+GKFV+A LRGDG+ GEDVSA I + IP+VLS Sbjct: 121 DCYNSIVFTLEPKIDGASLSIRYEQGKFVHAGLRGDGYIGEDVSANISMMSIIPQVLSFK 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD---ITRYLN 237 +PEI EVRGE+YISK DF LN+EM +K Y+NPRN +G+LR N T I+RYL Sbjct: 181 VPEIFEVRGEIYISKKDFFVLNEEMRTTKKKLYSNPRNTVAGLLRSRNQTSKSRISRYLK 240 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 FFVHG+G SE FA GQYEMLQKMR LGFPVN ++QA+T GIVSYY+E IRS+LPY Sbjct: 241 FFVHGIGTISEKFADGQYEMLQKMRALGFPVNERIQQAHTLEGIVSYYDETALIRSSLPY 300 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKVD F+LQ+QLGER+RSP W ISHKF++++ ST LL IDIQIGRTG+LTP+AR Sbjct: 301 DIDGIVYKVDSFTLQQQLGERSRSPIWAISHKFSDEEFSTPLLGIDIQIGRTGMLTPIAR 360 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 E +N+GG ++NATLHNE+YIKGLD+SGK++RGGRDIR+GD +LVKRAG+VIPKV D+I Sbjct: 361 FESINMGGVFVSNATLHNENYIKGLDSSGKIIRGGRDIRIGDMILVKRAGDVIPKVTDVI 420 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + ER D+Q FSFPS CP+CQS+VVR +NPKTGKL ++H CTGGL C AQQLE LK+FVS Sbjct: 421 MEERPIDSQMFSFPSSCPVCQSKVVRAVNPKTGKLGSSHYCTGGLMCPAQQLEYLKYFVS 480 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 RDAFNIEGLG++QLDFFFKSEDP+FSIRIPADIFTLQ RQQTS K+ENI GF VSVTN Sbjct: 481 RDAFNIEGLGEKQLDFFFKSEDPSFSIRIPADIFTLQHRQQTSFKKLENIPGFAHVSVTN 540 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 LYDSINKRRNISL+RFIFSLGI HVG EIARSLA++Y SYQNF EI NI+ ND +S Sbjct: 541 LYDSINKRRNISLQRFIFSLGIHHVGIEIARSLAQFYRSYQNFETEIKNILDKKNDADVS 600 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFT 655 L +V LVGD++AQ+I+ FYQNP N A+ ALL E+S S+ +++ S S + NK+LVFT Sbjct: 601 LKKVALVGDMVAQSIIAFYQNPENNRAIAALLNEISLSVWDSQEDNSRNSILANKRLVFT 660 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTLQKI RH+AQE V QLGA+VS+ +S KT I++VGDN GSKL KA+QLG++I+NEEQFL Sbjct: 661 GTLQKITRHQAQEAVKQLGAIVSSTISHKTHIVVVGDNAGSKLNKARQLGIEIVNEEQFL 720 Query: 716 FLLQQ 720 L+ + Sbjct: 721 SLISE 725 >gi|227822641|ref|YP_002826613.1| NAD-dependent DNA ligase LigA [Sinorhizobium fredii NGR234] gi|254781400|sp|C3MEL9|DNLJ_RHISN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|227341642|gb|ACP25860.1| DNA ligase [Sinorhizobium fredii NGR234] Length = 717 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/712 (49%), Positives = 493/712 (69%), Gaps = 4/712 (0%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E L+ +A +EL+ L E++ HD Y+ P I D++YDALKRR D I FP L R Sbjct: 7 PVEQLTETEAAEELAFLVTELARHDALYHGQDAPEISDADYDALKRRNDLIEELFPALIR 66 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P+ KIG +L+ V H+ P LSL+ ++ ED R F+ IYRF K D+SI Sbjct: 67 EDSPS---RKIGAAPSLTFQPVLHARPMLSLDNTFSDEDARDFVAGIYRFLGKLPDHSIA 123 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT EPKIDG +++RYE K V AA RGDG +GE+V+A IR I IP+ L + P+++EV Sbjct: 124 FTAEPKIDGLSMSLRYENRKLVTAATRGDGTTGENVTANIRTIRMIPQTLPADAPDVVEV 183 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGE+Y++K+DF ALN EM A GR Y NPRN ASG LR+L+ +R L FF + G+ Sbjct: 184 RGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRKLRFFAYAWGEI 243 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S + + Q+ M++ + GFPVN +++ ++ ++ +Y+ ++ R L YDIDG+VYKV Sbjct: 244 SAMPSDTQFGMVETFKAWGFPVNPLMQRLSSADELLQHYHHIERERPDLDYDIDGVVYKV 303 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D LQ +LG R+RSPRW +HKF +QA TRL IDIQ+GRTG LTPVARLEP+ +GG Sbjct: 304 DRLDLQARLGFRSRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITVGGV 363 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++TNATLHNEDYI+G+ SG+ +R GRDIR+GD V+V+RAG+VIP++VD++++ER A+ Sbjct: 364 VVTNATLHNEDYIRGIGNSGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERAEGAE 423 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP+ CP+C S VRD+N KTGK+ A RCTGG C AQ +E LKHFVSR AF+IEGL Sbjct: 424 PYRFPTTCPVCGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAIEHLKHFVSRHAFDIEGL 483 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++FFF+SEDP SIR DIFTL+RRQ+ S TK+ENI GFG VSV LY++IN RR Sbjct: 484 GSKQIEFFFESEDPTLSIRTAPDIFTLERRQEASLTKLENIEGFGKVSVRKLYEAINARR 543 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I+L RFI++LGIRHVG A+ LA+ Y +Y++F + + + D W L + +G+ Sbjct: 544 EIALHRFIYALGIRHVGETTAKLLARSYGTYEHFRAAMVDAGSLAGDAWNELNSIEGIGE 603 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+AIVEFY+ PRN+ V LL+EV P + S + K +VFTG+L+K+ R +A Sbjct: 604 VVARAIVEFYKEPRNLKVVSDLLEEVRPESAETRVSTDSPVAGKTVVFTGSLEKMTRDEA 663 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 664 KAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 715 >gi|86358438|ref|YP_470330.1| NAD-dependent DNA ligase LigA [Rhizobium etli CFN 42] gi|123738303|sp|Q2K6D3|DNLJ_RHIEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86282540|gb|ABC91603.1| DNA ligase (NAD+) protein [Rhizobium etli CFN 42] Length = 718 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/712 (47%), Positives = 493/712 (69%), Gaps = 5/712 (0%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ FP+L R Sbjct: 8 VETLTIEEAAAELERLAREIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ ++G +++ V H+ P LSL+ ++ ED++ F+ +YRF + D SI F Sbjct: 68 DSPS---RRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRMPDQSIAF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG ++IRYE G+ AA RGDG +GE+V+A IR I IP L +P ++E+R Sbjct: 125 TAEPKIDGLSMSIRYENGRLTTAATRGDGTTGENVTANIRTIAEIPNQLPKGVPAVVEIR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G+ S Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ A Q+ M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD Sbjct: 245 DMPADTQFAMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLKRPDLDYDIDGVVYKVD 304 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ++LG R+RSPRW +HKF +QA T + I+IQ+GRTG LTPVARL+P+ +GG + Sbjct: 305 SLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TNATLHNEDYIKG+ SG+ +R DIR GD V+V+RAG+VIP+++D+++ +R + + Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRLAEVK 424 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP+C S VR++N KTGK+ + RCTGG C AQ E LKHFVSR+AF+IEGL Sbjct: 425 PYEFPKICPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+DFFF++EDP+ IR +IFTL++RQQ S TK+ENI GFG VSV LY +IN+RR Sbjct: 485 GSKQIDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYAAINERR 544 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I+L RFI++LGIRHVG A+ LA+ Y +Y+ FA + + D W L + +G+ Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNAIEGIGE 604 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+A+VEFY+ PRN+ + LL EV+P+ S + K +VFTG+L+K R +A Sbjct: 605 VVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFTRDEA 664 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716 >gi|209550159|ref|YP_002282076.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|254781399|sp|B5ZWH9|DNLJ_RHILW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|209535915|gb|ACI55850.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 718 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/712 (47%), Positives = 492/712 (69%), Gaps = 5/712 (0%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ FP+L R Sbjct: 8 VDTLTIEEAAAELERLAKEIAHHDALYHGKDRPQISDADYDALKRRNDALEVQFPELIRE 67 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ ++G +++ V H+ P LSL+ ++ ED++ F+ +YRF + D SI F Sbjct: 68 DSPS---RRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRLPDQSIAF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P ++E+R Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G+ S Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A Q++M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD Sbjct: 245 EMPADTQFDMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +LG R+RSPRW +HKF +QA T + I+IQ+GRTG LTPVARL+P+ +GG + Sbjct: 305 SLELQARLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364 Query: 368 ITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TNATLHNEDYIKG+ SG+ +R DIR GD V+V+RAG+VIP+++D+++ +R DA+ Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEDHDIREGDTVIVQRAGDVIPQILDVVMEKRTADAR 424 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + FP CP+C S VR++N KTGK+ + RCTGG C AQ E LKHFVSR+AF+IEGL Sbjct: 425 SYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+DFFF+ ED + IR +IFTL++RQQ S TK+ENI GFG VSV LY +IN+RR Sbjct: 485 GSKQIDFFFEHEDASLQIRTAPEIFTLEKRQQASLTKLENIDGFGKVSVGKLYTAINERR 544 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I+L RFI++LGIRHVG A+ LA+ Y +Y+ FA + + D W L + +G+ Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFAMAMKEAAPLSGDAWNDLNAIEGIGE 604 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+A+VEFY+ PRN+ + L++EV+P S + K +VFTG+L+K R +A Sbjct: 605 VVARAMVEFYKEPRNVEVITRLIEEVTPQQAEQPVTTGSPVAGKTVVFTGSLEKFTRDEA 664 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716 >gi|327194610|gb|EGE61460.1| DNA ligase (NAD+) protein [Rhizobium etli CNPAF512] Length = 718 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/712 (47%), Positives = 493/712 (69%), Gaps = 5/712 (0%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ FP+L R Sbjct: 8 VDTLTIEEAAAELERLAKEIAHHDSLYHGKDQPEISDADYDALKRRNDALEVRFPELIRE 67 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +G +++ V H+ P LSL+ ++ ED++ F+ +YRF + D SI F Sbjct: 68 DSPS---RHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P ++E+R Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G+ + Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMA 244 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A Q+ M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD Sbjct: 245 EMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ++LG R+RSPRW +HKF +QA T + I+IQ+GRTG LTPVARL+P+ +GG + Sbjct: 305 SLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TNATLHNEDYIKG+ SG+ +R DIR GD V+V+RAG+VIP+++D+++ +R DA+ Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRAADAR 424 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + FP CP+C S VR++N KTGK+ + RCTGG C AQ E LKHFVSR+AF+IEGL Sbjct: 425 SYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+DFFF++EDP+ IR +IFTL++RQQ S TK+ENI GFG VSV LY +IN+RR Sbjct: 485 GAKQVDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYAAINERR 544 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I+L RFI++LGIRHVG A+ LA+ Y +Y+ FA + + D W L + +G+ Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNAIEGIGE 604 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+A+VEFY+ PRN+ + LL EV+P+ S + K +VFTG+L+K R +A Sbjct: 605 VVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFTRDEA 664 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716 >gi|190892570|ref|YP_001979112.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652] gi|254781398|sp|B3PTU7|DNLJ_RHIE6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190697849|gb|ACE91934.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652] Length = 718 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/712 (47%), Positives = 492/712 (69%), Gaps = 5/712 (0%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ FP+L R Sbjct: 8 VDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +G +++ V H+ P LSL+ ++ ED++ F+ +YRF + D SI F Sbjct: 68 DSPS---RHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P ++E+R Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G+ + Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMA 244 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A Q+ M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD Sbjct: 245 EMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ++LG R+RSPRW +HKF +QA T + I+IQ+GRTG LTPVARL+P+ +GG + Sbjct: 305 SLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TNATLHNEDYIKG+ SG+ +R DIR GD V+V+RAG+VIP+++D+++ +R DA+ Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRAADAR 424 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + FP CP+C S VR++N KTGK + RCTGG C AQ E LKHFVSR+AF+IEGL Sbjct: 425 SYEFPKTCPVCGSHAVREVNEKTGKTDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+DFFF++EDP+ IR +IFTL++RQQ S TK+ENI GFG VSV LY +IN+RR Sbjct: 485 GSKQVDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYAAINERR 544 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I+L RFI++LGIRHVG A+ LA+ Y +Y+ FA + + + W L + +G+ Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGEAWTDLNAIEGIGE 604 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+A+VEFY+ PRN+ + LL EV+P+ S + K +VFTG+L+K R +A Sbjct: 605 VVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFTRDEA 664 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716 >gi|241205543|ref|YP_002976639.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859433|gb|ACS57100.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 718 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/712 (47%), Positives = 489/712 (68%), Gaps = 5/712 (0%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ FP+L R Sbjct: 8 VDTLTIEEAAAELERLAKEIAHHDALYHGKDRPEISDADYDALKRRNDALEVRFPELIRE 67 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +G +++ V H+ P LSL+ ++ ED++ F+ +YRF + D SI F Sbjct: 68 DSPS---RHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P ++E+R Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G+ S Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A Q+ M+Q + GFPVN V++ N+ I+++Y+E+ R L YDIDG+VYKVD Sbjct: 245 EMPADTQFGMVQTFKDWGFPVNPLVKRLNSVADILTHYDEIGLERPDLDYDIDGVVYKVD 304 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +LG R+RSPRW +HKF +QA T + +IDIQ+GRTG LTPVARL P+ +GG + Sbjct: 305 SLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLTPITVGGVV 364 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TNATLHN DYI+G+ SG+ +R DIR+GD V+V+RAG+VIP+V+D+++ +R +A+ Sbjct: 365 VTNATLHNADYIRGIGNSGERIRADEHDIRIGDTVIVQRAGDVIPQVLDVVMEKRSAEAR 424 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP+C S VR+ + KTGKL + RCTGG C AQ E LKHFVSR+AF+IEGL Sbjct: 425 PYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+DFFF++ED + IR DIFTL++RQQ S TK+ENI GFG VSV LY +I +RR Sbjct: 485 GSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYAAITERR 544 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I+L RFI++LGIRHVG A+ LA+ Y +Y F + A + D W L + +G+ Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYAAFETAMREAEALSGDAWNDLNAIEGIGE 604 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+AIVEFY+ PRN+ + L++EV+P K S + K +VFTG+L+K R +A Sbjct: 605 VVARAIVEFYKEPRNVEVITRLIEEVTPEEAEQPKTAGSPVAGKTVVFTGSLEKFTRDEA 664 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI++ G GSKL+KA++ GV+ M+E+++L L+ Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKAREFGVQTMDEDEWLALI 716 >gi|222086432|ref|YP_002544966.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84] gi|254781247|sp|B9JH39|DNLJ_AGRRK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221723880|gb|ACM27036.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84] Length = 717 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 472/689 (68%), Gaps = 4/689 (0%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 +D Y+ P I D+EYDALKRR DAI FP L R++ P+ ++G + + V Sbjct: 30 NDALYHGNDAPEISDAEYDALKRRNDAIEARFPALVRADSPS---RRVGAAPSETFMPVV 86 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 H+ P LSL+ ++ ED++ F+ +YRF + D SI FT EPKIDG ++IRYE G+ V Sbjct: 87 HARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAFTAEPKIDGLSMSIRYENGRMVS 146 Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 AA RGDG +GE+V+A IR I IP+ L P ++E+RGEVY++K+DFLALN +M A G+ Sbjct: 147 AATRGDGTTGENVTANIRTIKEIPQTLPAGAPAVVEIRGEVYMAKSDFLALNAQMEAEGK 206 Query: 211 KPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269 + Y NPRN A+G LR+L+ +R L FF + G+ S++ A Q+ M+Q GFPVN Sbjct: 207 QSYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMSDMPADTQFGMVQAFGEWGFPVN 266 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 +++ N+ I+++Y+E+ R L YDIDG+VYKVD LQ +LG R+RSPRW +HK Sbjct: 267 PLMKRLNSVADILAHYDEIGLQRPDLDYDIDGVVYKVDSLELQARLGFRSRSPRWATAHK 326 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 F +QA TRLLDIDIQ+GRTG LTPVARLEP+ +GG ++TNATLHN DYIKG+ G+ + Sbjct: 327 FPAEQALTRLLDIDIQVGRTGALTPVARLEPITVGGVVVTNATLHNADYIKGIGNKGEPI 386 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449 R GRDIR+GD V+V+RAG+VIP++VD+++ +R + + FP CP+C S VRD+N KT Sbjct: 387 RDGRDIRIGDMVIVQRAGDVIPQIVDVVLEKREASSVAYEFPKTCPVCGSHAVRDINEKT 446 Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509 GK+ A RCTGG C AQ E LKHFVSR+A++IEGLG +Q+DFFF+S+DPA +R D Sbjct: 447 GKVDAVTRCTGGFICRAQATEHLKHFVSRNAYDIEGLGSKQIDFFFESDDPALQVRTAPD 506 Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 IFTL+RRQQ+S +K+ENI GFG VSV+ LY +IN+RR+I+L RFIF+LGIRHVG A+ Sbjct: 507 IFTLERRQQSSLSKLENIDGFGKVSVSKLYAAINERRDIALHRFIFALGIRHVGETTAKL 566 Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 LA+ Y +Y+ F + D W L + VG+++A+A+VEFY+ PRN+ + LL Sbjct: 567 LARSYGTYEAFEAGMKEAAPLAGDAWNDLNNIEGVGEVVARAVVEFYKEPRNVEVISKLL 626 Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 EV P S + K +VFTG+L+K R +A+ LGA VS +S+KTDI++ Sbjct: 627 DEVRPQEAEQPTTSGSPVVGKTVVFTGSLEKFTRDEAKAKAESLGAKVSGSVSKKTDIVV 686 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G GSKL+KA++ V++M E+++L L+ Sbjct: 687 AGPGAGSKLDKAREFNVQVMTEDEWLELI 715 >gi|116253034|ref|YP_768872.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. viciae 3841] gi|123261370|sp|Q1ME47|DNLJ_RHIL3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115257682|emb|CAK08780.1| putative DNA ligase [Rhizobium leguminosarum bv. viciae 3841] Length = 718 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/712 (48%), Positives = 494/712 (69%), Gaps = 5/712 (0%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+IE+A EL+ L +EI++HD Y+ +P I D++YDALKRR DA+ FP+L R Sbjct: 8 VDTLTIEEAAAELARLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVRFPELIRE 67 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +G +++ V H+ P LSL+ ++ ED++ F+ +YRF + D SI F Sbjct: 68 DSPS---RHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P ++E+R Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G+ S Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A Q+ M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD Sbjct: 245 EMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +LG R+RSPRW +HKF +QA T + +IDIQ+GRTG LTPVARL P+ +GG + Sbjct: 305 SLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLTPITVGGVV 364 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TNATLHN DYI+G+ SG+ +R DIR+GD V+V+RAG+VIP+V+D+++ +R +A+ Sbjct: 365 VTNATLHNADYIQGIGNSGERIRDDEHDIRIGDTVIVQRAGDVIPQVLDVVMEKRPAEAR 424 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP+C S VR+ + KTGKL + RCTGG C AQ E LKHFVSR+AF+IEGL Sbjct: 425 PYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+DFFF++ED + IR DIFTL++RQQ S TK+ENI GFG VSV LY +I++RR Sbjct: 485 GSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYGAIDERR 544 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I+L RFI++LGIRHVG A+ LA+ Y +Y+ F + A + D W L + +G+ Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFETAMREAEALSGDAWNDLNAIEGIGE 604 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+AIVEFY+ PRN+ + LL+EV+P K S + K +VFTG+L+K+ R +A Sbjct: 605 VVARAIVEFYKEPRNVEVITRLLEEVTPEEAEQPKTAGSPVAGKTVVFTGSLEKLTRDEA 664 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+Q+L L+ Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDQWLALI 716 >gi|150397271|ref|YP_001327738.1| NAD-dependent DNA ligase LigA [Sinorhizobium medicae WSM419] gi|166216245|sp|A6UB73|DNLJ_SINMW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150028786|gb|ABR60903.1| DNA ligase, NAD-dependent [Sinorhizobium medicae WSM419] Length = 717 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/715 (48%), Positives = 490/715 (68%), Gaps = 4/715 (0%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 Q P+E ++ +A +EL+ L E+S HD Y+ P I D++YDALKRR D I FP Sbjct: 4 QRKPVEQMTEAEAAEELAFLAAELSRHDMLYHGKDDPEISDADYDALKRRNDLIEERFPA 63 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L R + P+ K+G +L+ V H+ P LSL+ ++ ED R F+ IYRF + D Sbjct: 64 LIREDSPS---QKVGAAPSLTFAPVVHARPMLSLDNSFSDEDARAFVAGIYRFLGRLPDG 120 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 SI FT+EPKIDG +++RYE + V AA RGDG +GE+V+A +R I IP+ L P++ Sbjct: 121 SIAFTVEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANVRTIGMIPQRLPAEAPDV 180 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 +E+RGE+Y++K+DF ALN EM A GR Y NPRN ASG LR+L+ +R L FF + Sbjct: 181 VEIRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRRLRFFAYAW 240 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G+ S + A Q M++ + GFPVN +++ + ++ +Y+ ++ R L YDIDG+V Sbjct: 241 GEMSAMPADTQLGMVETFKAWGFPVNPLMQRFFSADELLEHYHHIERERPELDYDIDGVV 300 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD+ LQ +LG R+RSPRW +HKF ++A TRL IDIQ+GRTG LTPVARLEP+ + Sbjct: 301 YKVDQLDLQARLGFRSRSPRWATAHKFPAERAFTRLKGIDIQVGRTGALTPVARLEPITV 360 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++TNATLHNEDYI+G+ +G+ +R GRDIR+GD V+V+RAG+VIP++VD++++ER Sbjct: 361 GGVVVTNATLHNEDYIRGIGNTGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERPE 420 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 +P+ FP+ CPIC S VRD+N KTGK+ A RCTGG C AQ +E LKHFVSR+AF+I Sbjct: 421 GTEPYRFPTSCPICGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDI 480 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG +Q++FFF+SED IR DIFTL+RRQ++S TK+ENI GFG VSV LY++IN Sbjct: 481 EGLGSKQIEFFFESEDETLRIRTAPDIFTLERRQESSLTKLENIDGFGKVSVRKLYEAIN 540 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 RR+I L RFI++LGIRHVG A+ LA+ Y +Y++F + + D W L + Sbjct: 541 ARRSIGLHRFIYALGIRHVGETTAKLLARSYGTYEHFGAAMTEAGGFSGDAWNELNSIDG 600 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G+++A+AIVEFY+ PRN+ + LL+EV+P S + K +VFTG+L+K+ R Sbjct: 601 IGEVVARAIVEFYKEPRNLKVLSDLLEEVTPERAEMPVATDSPVAGKTVVFTGSLEKMTR 660 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ LGA V+ +S+KTDI++ G GSKL+KA++LG++ M+E+++L L+ Sbjct: 661 DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGLQTMDEDEWLALI 715 >gi|15965917|ref|NP_386270.1| NAD-dependent DNA ligase LigA [Sinorhizobium meliloti 1021] gi|307308227|ref|ZP_07587936.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C] gi|307319694|ref|ZP_07599119.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83] gi|81634276|sp|Q92NM8|DNLJ_RHIME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|15075186|emb|CAC46743.1| Probable DNA ligase [Sinorhizobium meliloti 1021] gi|306894625|gb|EFN25386.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83] gi|306901225|gb|EFN31831.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C] Length = 717 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/689 (48%), Positives = 470/689 (68%), Gaps = 4/689 (0%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 HD Y+ P I D++YDALKRR D I FP L R + P+ K+G +L+ V Sbjct: 30 HDMLYHGKDAPEISDADYDALKRRNDLIEERFPVLVREDSPS---RKVGAAPSLTFAPVV 86 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 H+ P LSL+ ++ ED R F+ +YRF K D SI FT EPKIDG +++RYE + V Sbjct: 87 HARPMLSLDNTFSDEDARAFVAGVYRFLGKLPDGSIAFTAEPKIDGLSMSLRYENRRLVT 146 Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 AA RGDG +GE+V+A +R I IP+ L + P+++E+RGE+Y++K+DF ALN EM A GR Sbjct: 147 AATRGDGTTGENVTANVRTIGMIPQTLPADAPDVVEIRGEIYMAKSDFAALNAEMAAQGR 206 Query: 211 KPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269 Y NPRN ASG LR+L+ R L FF + G+ S + A Q M++ + GFPVN Sbjct: 207 PLYVNPRNTASGSLRQLDAKVTANRKLRFFAYAWGEMSAMPADTQLGMVETFKAWGFPVN 266 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 +++ + ++ +Y+ ++ R L YDIDG+VYKVD LQ +LG R+RSPRW +HK Sbjct: 267 PLMQRFFSADELLEHYHHIERERPDLDYDIDGVVYKVDRLDLQARLGFRSRSPRWATAHK 326 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 F +QA TRL IDIQ+GRTG LTPVARLEP+ +GG ++TNATLHNEDYI+G+ +G+ + Sbjct: 327 FPAEQAFTRLKGIDIQVGRTGALTPVARLEPITVGGVVVTNATLHNEDYIRGVGNTGEPI 386 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449 R GRD+R+GD V+V+RAG+VIP++VD++++ER A+P+ FP+ CPIC S VRD+N KT Sbjct: 387 RDGRDVRIGDMVIVQRAGDVIPQIVDVVMDERPEGAEPYRFPTTCPICGSHAVRDINEKT 446 Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509 GK+ A RCTGG C AQ +E LKHFVSR+AF+IEGLG +Q++FFF+SED IR + Sbjct: 447 GKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDIEGLGSKQIEFFFESEDENLRIRTAPE 506 Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 IFTL+RRQ+ S K+EN GFG VSV LY++IN RR+I+L R I++LGIRHVG A+ Sbjct: 507 IFTLERRQEASLNKLENTDGFGKVSVRKLYEAINARRSIALHRLIYALGIRHVGETTAKL 566 Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 LA+ Y SY++F + + D W L + +G+++A+AIVEFY+ PRN+ V LL Sbjct: 567 LARSYGSYEHFGAAMTEAAGFSGDAWNELNSIDGIGEVVARAIVEFYKEPRNLKVVSELL 626 Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 +EV+P S + K +VFTG+L+K+ R +A+ LGA V+ +S+KTDI++ Sbjct: 627 QEVTPESAELPVATDSPVAGKTVVFTGSLEKMTREEAKAKAESLGAKVAGSVSKKTDIVV 686 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 687 AGPGAGSKLDKARELGVQTMDEDEWLALI 715 >gi|222149123|ref|YP_002550080.1| NAD-dependent DNA ligase LigA [Agrobacterium vitis S4] gi|254781248|sp|B9JY41|DNLJ_AGRVS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221736108|gb|ACM37071.1| DNA ligase [Agrobacterium vitis S4] Length = 719 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/716 (48%), Positives = 480/716 (67%), Gaps = 6/716 (0%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 LIP+E LS EQA +EL L I++HD Y+ +P I D++YDALKRR DAI FP L Sbjct: 5 LIPVEDLSEEQAGQELIRLAAAIAHHDALYHGKDQPEISDADYDALKRRNDAIEARFPTL 64 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 RS+ P+ ++G ++TH+ P LSL+ ++ ED+ F+ +YRF DNS Sbjct: 65 VRSDSPS---QRVGAAPAGIFSQITHARPMLSLDNTFSDEDVADFVASVYRFLGVMPDNS 121 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE K AA RGDG +GE+V+A I I IP L + P+++ Sbjct: 122 IAFTAEPKIDGLSMSIRYEHRKLKTAATRGDGTTGENVTANILTIKEIPTELPADAPDVV 181 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY++K+DFLALN +M A GR+ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 182 EVRGEVYMAKSDFLALNAQMEAEGRQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWG 241 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S + A+ Q M++ + GFPVN R+ + I+++Y E+ R+ L YDIDG+VY Sbjct: 242 EMSTMPAETQSGMVEAFKRWGFPVNPLTRRLTSVEEIIAHYREIGLQRADLDYDIDGVVY 301 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW +HKF +QA T + IDIQ+GRTG LTPVARLEP+ +G Sbjct: 302 KVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTTVEAIDIQVGRTGALTPVARLEPITVG 361 Query: 365 GALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++TNATLHN DYI+G+ G+ +R G DIR+GD V+V+RAG+VIP+V+D+++ +R Sbjct: 362 GVVVTNATLHNADYIEGIGNGGERIRPEGHDIRIGDTVIVQRAGDVIPQVLDVVLEKRPE 421 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + + FP CP+C S VR+ N KTGKL + RCTGG CSAQ E +KHFVSR+AF+I Sbjct: 422 TSVKYEFPKTCPVCGSHAVREKNEKTGKLDSVTRCTGGFVCSAQAKEHIKHFVSRNAFDI 481 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSI 542 EGLG +Q+DFFF+SEDPA IR DIFTL++RQ+ S+ T++ENI GFG VSV L+D+I Sbjct: 482 EGLGTKQVDFFFESEDPALMIRTAPDIFTLKQRQEASSLTRLENIDGFGRVSVRKLFDAI 541 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + RR I+L RFIF+LGIRHVG A+ LA+ Y SY FA + + W L + Sbjct: 542 DARREIALNRFIFALGIRHVGETTAKLLARSYGSYAAFADAMQEAAPKFGEAWNELNSID 601 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G+++A ++VEF++ PRN+ V LLKEV+P S + K +VFTG+L++ Sbjct: 602 GIGEVVAASMVEFFKEPRNLEVVSRLLKEVTPLDAEAVTASDSPVAGKTVVFTGSLERFT 661 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V+ +S+KTD ++ G GSKL+KA+++GV +M E+++L L+ Sbjct: 662 RDEAKARAESLGAKVAGSVSKKTDYLVAGPGAGSKLDKAREVGVTVMTEDEWLALI 717 >gi|254719452|ref|ZP_05181263.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13] gi|265984457|ref|ZP_06097192.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13] gi|306839229|ref|ZP_07472046.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653] gi|264663049|gb|EEZ33310.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13] gi|306405776|gb|EFM62038.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653] Length = 719 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/724 (47%), Positives = 479/724 (66%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ ++G L+ F V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYEDGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPSVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ +R D Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDVVLEKRSAD 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A PF FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 AVPFQFPHECPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA SIR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALSIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + D W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|325293451|ref|YP_004279315.1| DNA ligase [Agrobacterium sp. H13-3] gi|325061304|gb|ADY64995.1| DNA ligase [Agrobacterium sp. H13-3] Length = 724 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/727 (47%), Positives = 490/727 (67%), Gaps = 14/727 (1%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K Q IP+E L+ +A EL+ L E++ HD Y+ P I D++YDALKRR DAI Sbjct: 1 MSKDQ-IPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEA 59 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFP L R++ P+ K+G + + H+ P LSL+ ++ DLR F++ +YRF Sbjct: 60 AFPALVRADSPS---KKVGFTPLPTFAPIVHARPMLSLDNTFSEGDLRDFVSSVYRFLGH 116 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D+SI FT EPKIDG ++IRYE GK AA RGDG +GE+V+A I+ I IP L + Sbjct: 117 LPDDSIAFTAEPKIDGLSMSIRYENGKLKTAATRGDGTTGENVTANIKTIKEIPNQLPAD 176 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF 238 +P+++EVRGEVY++K+DF+ALN +M A G++ Y NPRN ASG LR+ + ++T R L F Sbjct: 177 VPDVVEVRGEVYMAKSDFMALNAQMEADGKQTYVNPRNTASGSLRQFD-ANVTAKRKLRF 235 Query: 239 FVHGLGKTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 F + LG+ S A QY +++K R GFPVN +++ + ++ +YNE+ R Sbjct: 236 FAYALGEVSNGGQPTRIADTQYGIVEKFREWGFPVNPLMKRFTSAEQLLEHYNEIGVARP 295 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 L YDIDG+VYKVD LQ++LG R+RSPRW +HKF +QA T + +I+IQ+GRTG LT Sbjct: 296 DLDYDIDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALT 355 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPK 412 PVARL P+ +GG ++TNATLHN DYI+G+ SG+ +R DIR+GD V+V+RAG+VIP+ Sbjct: 356 PVARLTPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQ 415 Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472 V+D+++ +R +A ++FP CP+C S VR+ N KTGKL + RCTGG C AQ +E L Sbjct: 416 VLDVLLEKRPAEAVKYAFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHL 475 Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFG 531 KHFVSR+AF+IEGLG +Q+DFFF+SEDPA SI+ DIFTL+ RQ+ S TK+ENI GFG Sbjct: 476 KHFVSRNAFDIEGLGSKQIDFFFESEDPALSIKTAPDIFTLKARQEASHLTKLENIDGFG 535 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 VSV L+D+I+ RR I L R IF+LGIRHVG A+ LA+ Y +Y++F + + Sbjct: 536 KVSVKKLFDAIDARREIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEEAMKAAADPA 595 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 +D W L + +G+++A+AI+EFY+ PRN+ ++ L++E+ P S + K Sbjct: 596 SDAWAELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELRPKEAEKPSTEGSPVAGKT 655 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +VFTG+L+K R +A+ LGA V+ +S+KTDI++ G GSKL KA +LGV+ M+E Sbjct: 656 VVFTGSLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKAAELGVQTMDE 715 Query: 712 EQFLFLL 718 +++L L+ Sbjct: 716 DEWLALI 722 >gi|306844319|ref|ZP_07476911.1| DNA ligase, NAD-dependent [Brucella sp. BO1] gi|306275391|gb|EFM57132.1| DNA ligase, NAD-dependent [Brucella sp. BO1] Length = 719 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/724 (46%), Positives = 477/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEARFPALV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ ++G L+ F V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L DIDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRDIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYEFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + D W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDVVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|15889366|ref|NP_355047.1| NAD-dependent DNA ligase LigA [Agrobacterium tumefaciens str. C58] gi|166215388|sp|A9CIB3|DNLJ_AGRT5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|15157212|gb|AAK87832.1| DNA ligase [Agrobacterium tumefaciens str. C58] Length = 724 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/727 (47%), Positives = 488/727 (67%), Gaps = 14/727 (1%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K Q IP+E L+ +A EL+ L E++ HD Y+ P I D++YDALKRR DAI Sbjct: 1 MSKDQ-IPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEA 59 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFP L R++ P+ K+G + + H+ P LSL+ ++ EDLR F++ +YRF Sbjct: 60 AFPALVRADSPS---KKVGFTPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGH 116 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D+SI FT EPKIDG ++IRYE K AA RGDG +GE+V+A IR I IP L + Sbjct: 117 LPDDSIAFTAEPKIDGLSMSIRYENRKLKTAATRGDGTTGENVTANIRTIKEIPNELPAD 176 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF 238 P+++EVRGEVY++K+DFLALN +M A G++ Y NPRN ASG LR+L+ ++T R L F Sbjct: 177 APDVVEVRGEVYMAKSDFLALNAQMEADGKQTYVNPRNTASGSLRQLD-ANVTAKRKLRF 235 Query: 239 FVHGLGKTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 F + LG+ S A QY +++K R GFPVN +++ + ++ +YNE+ R Sbjct: 236 FAYALGEVSNGGQPARIADTQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARP 295 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 L YDIDG+VYKVD LQ++LG R+RSPRW +HKF +QA T + +I+IQ+GRTG LT Sbjct: 296 DLDYDIDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALT 355 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPK 412 PVARL P+ +GG ++TNATLHN DYI+G+ SG+ +R DIR+GD V+V+RAG+VIP+ Sbjct: 356 PVARLTPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQ 415 Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472 V+D+++ +R A + FP CP+C S VR+ N KTGKL + RCTGG C AQ +E L Sbjct: 416 VLDVLLEKRAAGAAKYVFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHL 475 Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFG 531 KHFVSR+AF+IEGLG +Q+DFFF+S+DPA SI+ DIFTL+ RQ+ S TK+ENI GFG Sbjct: 476 KHFVSRNAFDIEGLGTKQIDFFFESDDPALSIKTAPDIFTLKARQEASHLTKLENIDGFG 535 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 VSV L+D+I+ RR I L R IF+LGIRHVG A+ LA+ Y +Y++F + + Sbjct: 536 KVSVKKLFDAIDARRAIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEKAMKAAADPA 595 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 +D W L + +G+++A+AI+EFY+ PRN+ ++ L++E+ P S + K Sbjct: 596 SDAWAELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELQPKEAEKPSTEGSPVAGKT 655 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +VFTG+L+K R +A+ LGA V+ +S+KTDI++ G GSKL KA +LGV+ M+E Sbjct: 656 VVFTGSLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKATELGVQTMDE 715 Query: 712 EQFLFLL 718 +++L L+ Sbjct: 716 DEWLALI 722 >gi|225852902|ref|YP_002733135.1| NAD-dependent DNA ligase LigA [Brucella melitensis ATCC 23457] gi|256263616|ref|ZP_05466148.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9] gi|254781270|sp|C0RE59|DNLJ_BRUMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225641267|gb|ACO01181.1| DNA ligase, NAD-dependent [Brucella melitensis ATCC 23457] gi|263093668|gb|EEZ17673.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9] gi|326409444|gb|ADZ66509.1| NAD-dependent DNA ligase LigA [Brucella melitensis M28] gi|326539150|gb|ADZ87365.1| DNA ligase, NAD-dependent [Brucella melitensis M5-90] Length = 719 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/724 (46%), Positives = 476/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ ++G L+ F V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + D W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|17986872|ref|NP_539506.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. 16M] gi|256045051|ref|ZP_05447952.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. Rev.1] gi|260565350|ref|ZP_05835834.1| DNA ligase [Brucella melitensis bv. 1 str. 16M] gi|265991477|ref|ZP_06104034.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. Rev.1] gi|81852173|sp|Q8YI56|DNLJ_BRUME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|17982511|gb|AAL51770.1| nad-dependent DNA ligase [Brucella melitensis bv. 1 str. 16M] gi|260151418|gb|EEW86512.1| DNA ligase [Brucella melitensis bv. 1 str. 16M] gi|263002261|gb|EEZ14836.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. Rev.1] Length = 719 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/724 (46%), Positives = 477/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ ++G L++F V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RDDSPS---RRVGAAPALAIFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + D W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFKKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|23502291|ref|NP_698418.1| NAD-dependent DNA ligase LigA [Brucella suis 1330] gi|62290313|ref|YP_222106.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 1 str. 9-941] gi|82700237|ref|YP_414811.1| NAD-dependent DNA ligase LigA [Brucella melitensis biovar Abortus 2308] gi|161619368|ref|YP_001593255.1| NAD-dependent DNA ligase LigA [Brucella canis ATCC 23365] gi|163843675|ref|YP_001628079.1| NAD-dependent DNA ligase LigA [Brucella suis ATCC 23445] gi|189024547|ref|YP_001935315.1| NAD-dependent DNA ligase LigA [Brucella abortus S19] gi|225627871|ref|ZP_03785908.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo] gi|254689615|ref|ZP_05152869.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870] gi|254694105|ref|ZP_05155933.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya] gi|254697757|ref|ZP_05159585.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59] gi|254704678|ref|ZP_05166506.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686] gi|254708093|ref|ZP_05169921.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10] gi|254710462|ref|ZP_05172273.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94] gi|254730646|ref|ZP_05189224.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292] gi|256031956|ref|ZP_05445570.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1] gi|256113974|ref|ZP_05454757.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str. Ether] gi|256160155|ref|ZP_05457849.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1] gi|256257864|ref|ZP_05463400.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68] gi|256369836|ref|YP_003107347.1| DNA ligase [Brucella microti CCM 4915] gi|260169093|ref|ZP_05755904.1| NAD-dependent DNA ligase LigA [Brucella sp. F5/99] gi|260546856|ref|ZP_05822595.1| DNA ligase [Brucella abortus NCTC 8038] gi|260566074|ref|ZP_05836544.1| DNA ligase [Brucella suis bv. 4 str. 40] gi|260755142|ref|ZP_05867490.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870] gi|260758361|ref|ZP_05870709.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292] gi|260762187|ref|ZP_05874530.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59] gi|260884154|ref|ZP_05895768.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68] gi|261214403|ref|ZP_05928684.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya] gi|261315595|ref|ZP_05954792.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10] gi|261318033|ref|ZP_05957230.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94] gi|261755371|ref|ZP_05999080.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686] gi|261758598|ref|ZP_06002307.1| DNA ligase [Brucella sp. F5/99] gi|265989064|ref|ZP_06101621.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1] gi|265995315|ref|ZP_06107872.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str. Ether] gi|265998527|ref|ZP_06111084.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1] gi|297248700|ref|ZP_06932418.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196] gi|75496544|sp|Q57C89|DNLJ_BRUAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81752355|sp|Q8FZQ3|DNLJ_BRUSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123768412|sp|Q2YLZ6|DNLJ_BRUA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359236|sp|A9M679|DNLJ_BRUC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359237|sp|B0CHK8|DNLJ_BRUSI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781269|sp|B2S6P4|DNLJ_BRUA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|23348266|gb|AAN30333.1| DNA ligase, NAD-dependent [Brucella suis 1330] gi|62196445|gb|AAX74745.1| LigA, DNA ligase, NAD-dependent [Brucella abortus bv. 1 str. 9-941] gi|82616338|emb|CAJ11395.1| BRCT domain:NAD-dependent DNA ligase:ATP/GTP-binding site motif A (P-loop):Zn-finger in NAD-dependent DNA ligase, C4 type:NAD [Brucella melitensis biovar Abortus 2308] gi|161336179|gb|ABX62484.1| DNA ligase, NAD-dependent [Brucella canis ATCC 23365] gi|163674398|gb|ABY38509.1| DNA ligase, NAD-dependent [Brucella suis ATCC 23445] gi|189020119|gb|ACD72841.1| DNA ligase [Brucella abortus S19] gi|225617876|gb|EEH14921.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo] gi|255999999|gb|ACU48398.1| DNA ligase [Brucella microti CCM 4915] gi|260095906|gb|EEW79783.1| DNA ligase [Brucella abortus NCTC 8038] gi|260155592|gb|EEW90672.1| DNA ligase [Brucella suis bv. 4 str. 40] gi|260668679|gb|EEX55619.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292] gi|260672619|gb|EEX59440.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59] gi|260675250|gb|EEX62071.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870] gi|260873682|gb|EEX80751.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68] gi|260916010|gb|EEX82871.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya] gi|261297256|gb|EEY00753.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94] gi|261304621|gb|EEY08118.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10] gi|261738582|gb|EEY26578.1| DNA ligase [Brucella sp. F5/99] gi|261745124|gb|EEY33050.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686] gi|262553151|gb|EEZ08985.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1] gi|262766428|gb|EEZ12217.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str. Ether] gi|264661261|gb|EEZ31522.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1] gi|297175869|gb|EFH35216.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196] Length = 719 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/724 (46%), Positives = 476/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ ++G L+ F V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + D W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|237815820|ref|ZP_04594817.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A] gi|237789118|gb|EEP63329.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A] Length = 725 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/724 (46%), Positives = 476/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 10 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 69 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ ++G L+ F V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 70 RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 126 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 127 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 186 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 187 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 246 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 247 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 306 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 307 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 366 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 367 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 426 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 427 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 480 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 481 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 540 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + D W Sbjct: 541 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 600 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 601 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 660 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 661 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 720 Query: 717 LLQQ 720 L+ + Sbjct: 721 LVGE 724 >gi|239832299|ref|ZP_04680628.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301] gi|239824566|gb|EEQ96134.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301] Length = 734 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/724 (47%), Positives = 476/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP+E L+ +A EL L +EI++HD+ Y+ +P I D+EYDALKRR DAI FP L Sbjct: 19 IPVEKLTEPEAVSELGRLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLV 78 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R++ P+ ++G V H+ P LSL ++ ED+R F+ +YRF + DNSI Sbjct: 79 RTDSPS---LRVGTAPVSKFAPVVHARPMLSLGNAFSDEDVRDFVGSVYRFLGQLPDNSI 135 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++E Sbjct: 136 AFTAEPKIDGLSMSIRYENGVLVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPSVVE 195 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 VRGEVY++K+DFLALN++M A G++ Y NPRN A+G LR+L+ +R L FF + G+ Sbjct: 196 VRGEVYMAKSDFLALNEQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGE 255 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S++ A Q M++ R GFPVN ++ + ++++Y + R TL YDIDG+VYK Sbjct: 256 MSDMPADTQMGMVEMFREWGFPVNPLTKRLHGADELLAHYRAIGLERPTLDYDIDGVVYK 315 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD LQ +LG R+RSPRW I+HKF +QA+T L IDIQ+GRTG LTPVARLEP+ +GG Sbjct: 316 VDRLDLQTRLGFRSRSPRWAIAHKFPAEQATTILRGIDIQVGRTGALTPVARLEPITVGG 375 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 ++TNATLHNEDYIKG+ G+ +R DIR+GD V+V+RAG+VIP++VD+I+ +R D Sbjct: 376 VVVTNATLHNEDYIKGIGLKGERIRADEHDIRLGDTVIVQRAGDVIPQIVDVILEKRPVD 435 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A PF FP CP+C S VR+ A +RCTGGL C+AQ +ER++HFVSR+AF+IE Sbjct: 436 AVPFHFPHECPVCGSHAVREEGE------AVYRCTGGLTCAAQAVERIRHFVSRNAFDIE 489 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +ED + I+ PADIFTLQ+RQ S K+ENI GFG SV LYD+IN Sbjct: 490 GLGEKQVEFFFHAEDDSLKIKSPADIFTLQKRQAGSLKKLENIEGFGATSVKKLYDAIND 549 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA--------HNNDDWL 596 RR I+L RF+F LGIRHVG A+ A+ YLSY F + + N+ W Sbjct: 550 RREIALNRFLFGLGIRHVGEVNAKRFARSYLSYAAFEKAALEAVPPKEGDRTDKGNEAWQ 609 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 LI V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 610 DLIAVEGIGSIVAEAVVDFYAEPHNREVLAALLAEVTPLDEAARVATGSPVEGKTVVFTG 669 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +SRKTD+++ G GSKL KA +LG+++++E+ + Sbjct: 670 SLERMSRDEAKAMAERYGAKTAGSVSRKTDLVVAGPGAGSKLAKASELGIEVIDEDAWFK 729 Query: 717 LLQQ 720 L+ + Sbjct: 730 LVGE 733 >gi|254702142|ref|ZP_05163970.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513] gi|261752711|ref|ZP_05996420.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513] gi|261742464|gb|EEY30390.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513] Length = 719 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/724 (46%), Positives = 475/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ ++G L+ F V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + D W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTVGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|148560656|ref|YP_001259312.1| NAD-dependent DNA ligase LigA [Brucella ovis ATCC 25840] gi|166215401|sp|A5VRG5|DNLJ_BRUO2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148371913|gb|ABQ61892.1| DNA ligase, NAD-dependent [Brucella ovis ATCC 25840] Length = 719 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/724 (46%), Positives = 475/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ ++G L+ F V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPVDTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + D W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|306843233|ref|ZP_07475843.1| DNA ligase, NAD-dependent [Brucella sp. BO2] gi|306286556|gb|EFM58135.1| DNA ligase, NAD-dependent [Brucella sp. BO2] Length = 719 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/724 (46%), Positives = 475/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ ++G L+ F V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLVLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LY++I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYEAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + D W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|256255361|ref|ZP_05460897.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94] gi|261222562|ref|ZP_05936843.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94] gi|260921146|gb|EEX87799.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94] Length = 719 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/724 (46%), Positives = 475/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ ++G L+ F V H+ P LSL+ ++ ED+R F+ + RF + D+S Sbjct: 64 RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVCRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + D W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|254714455|ref|ZP_05176266.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1] gi|254717353|ref|ZP_05179164.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1] gi|261219183|ref|ZP_05933464.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1] gi|261322244|ref|ZP_05961441.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1] gi|260924272|gb|EEX90840.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1] gi|261294934|gb|EEX98430.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1] Length = 719 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/724 (46%), Positives = 476/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ ++G L+ F V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG S+ LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSMKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596 RR I+L RF+F LGIR+VG A+ LA+ YLSY F + + D W Sbjct: 535 RREIALHRFLFGLGIRYVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|256061478|ref|ZP_05451622.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33] gi|261325484|ref|ZP_05964681.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33] gi|261301464|gb|EEY04961.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33] Length = 719 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/724 (46%), Positives = 474/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ ++G L+ F V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY+ K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMVKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +ED A IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDSALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + D W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|294852747|ref|ZP_06793420.1| DNA ligase [Brucella sp. NVSL 07-0026] gi|294821336|gb|EFG38335.1| DNA ligase [Brucella sp. NVSL 07-0026] Length = 719 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/724 (46%), Positives = 474/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ ++G L+ F V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GF VN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFLVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAGQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--------WL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + D W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|163868703|ref|YP_001609915.1| NAD-dependent DNA ligase LigA [Bartonella tribocorum CIP 105476] gi|190359235|sp|A9IW95|DNLJ_BART1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161018362|emb|CAK01920.1| DNA ligase [Bartonella tribocorum CIP 105476] Length = 719 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/722 (46%), Positives = 473/722 (65%), Gaps = 17/722 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L++ +A +EL L +EI+ HD Y + +P I D+EYDAL+RR I FP+L R Sbjct: 6 IKNLTVVEAERELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRV 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +KIG ++ K H+ P LSL+ ++ ED+ +F+ RI RF + + + Sbjct: 66 DSPS---HKIGAAISEKFEKSVHAQPMLSLDNAFSAEDVYEFVERIRRFLRLPETQVLEI 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYEKG+ V AA RGDG GE+V+A R I IP+VL + P++IEVR Sbjct: 123 TAEPKIDGLSLSLRYEKGRLVRAATRGDGTVGENVTANARTIADIPQVLQGDFPDVIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY+ + DF ALN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 EIFA+ Q EM+ K++ GF +N + T I+SYY +++ R +L YDIDG+VYKV+ Sbjct: 243 EIFAESQMEMMTKLKEYGFVINPLTKVFKTVEDIISYYRDIEERRYSLNYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQK+LG +RSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ IGG + Sbjct: 303 DLMLQKRLGFVSRSPRWAIAHKFPAEKAMALLEDIDIQVGRTGALTPVARLTPITIGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNA+LHNEDYIKG+ G+ +R GRDIR+GD V+++RAG+VIP+VVDI++ +R D+ Sbjct: 363 VTNASLHNEDYIKGIGHKGEPIREGRDIRIGDTVIIQRAGDVIPQVVDIVLEKRQKDSSA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP C S VR++ A RCTGGL C AQ +ER++HFV+R+AF+IEGLG Sbjct: 423 FVFPDLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVARNAFDIEGLG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 K+Q++FFF ++D A I PADIFTL+RRQ+ S ++ENI GFG VSV LYD+IN RR Sbjct: 477 KKQVEFFFHAQDEALCIHTPADIFTLERRQEKSLIRLENIEGFGTVSVRKLYDAINARRE 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA-------HNNDDWLSLIR 600 I L RF+F+LGIRHVG AR LA+ Y +Y F + N+ W+ L Sbjct: 537 IPLSRFLFALGIRHVGEVNARRLARAYQTYTAFETAAMEALMPCKQDNKEGNEAWMELTN 596 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G + AIV+FYQ N + LL+E++P SS I K +VFTGTL Sbjct: 597 IEGIGPQVGSAIVDFYQEAHNREVLAVLLEEITPLDEVPIMTASSPIAEKIIVFTGTLAH 656 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R +A+ +LGA S LS+KTD+++ G GSKL KAQ+ GV++++EE ++ L++ Sbjct: 657 MSRDEAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLTKAQEFGVQVIDEEAWMRLIKG 716 Query: 721 YN 722 +N Sbjct: 717 HN 718 >gi|240850882|ref|YP_002972282.1| DNA ligase [Bartonella grahamii as4aup] gi|240268005|gb|ACS51593.1| DNA ligase [Bartonella grahamii as4aup] Length = 719 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/719 (47%), Positives = 472/719 (65%), Gaps = 17/719 (2%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ +A EL L +EI+ HD Y + +P I D+EYDAL+RR I FP+L R + P Sbjct: 9 LTAVEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRVDSP 68 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + +KIG ++ K H+ P LSL+ ++ ED+ +F+ RI RF + + + T E Sbjct: 69 S---HKIGAPISEKFEKSVHAQPMLSLDNAFSSEDVTEFVERIRRFLRLPETQVLEITAE 125 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++RYEKG+ V AA RGDG GE+V+A R I IP+VL + P+IIEVRGEV Sbjct: 126 PKIDGLSLSLRYEKGRLVGAATRGDGTVGENVTANARTIADIPQVLQGDFPDIIEVRGEV 185 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+ + DF ALN G+ +ANPRNAA+G LR+L+ +R L FF + G+ SEI Sbjct: 186 YMGREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVSEIL 245 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A+ Q EM++K++ GF +N + T I+SYY++++ R +L YDIDG+VYKV++ Sbjct: 246 AESQMEMMKKLKEYGFVINPLTKAFKTLEEIISYYHDIEECRHSLSYDIDGIVYKVNDLM 305 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQK+LG +RSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ +GG ++TN Sbjct: 306 LQKRLGFVSRSPRWAIAHKFPAEKAIALLKDIDIQVGRTGALTPVARLTPITVGGVVVTN 365 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNEDYIKG+ G+ +R GRDIRVGD V+V+RAG+VIP+V+D+I+ +R DA F F Sbjct: 366 ASLHNEDYIKGIGHKGEPIREGRDIRVGDSVIVQRAGDVIPQVIDVIIEKRPKDAAVFIF 425 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S VR++ A RCTGGL C AQ +ER++HFV+R+AF+IEGLGK+Q Sbjct: 426 PHLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVARNAFDIEGLGKKQ 479 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++FFF ++D A I PADIFTL+RRQ+ S ++ENI GFG VSV LYD+IN RR I L Sbjct: 480 VEFFFYAQDEALCIHTPADIFTLERRQEKSLIRLENIEGFGTVSVRKLYDAINARREIPL 539 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA-------HNNDDWLSLIRVPL 603 RF+F+LGIRHVG AR LA+ Y +Y F + N+ W+ L + Sbjct: 540 SRFLFALGIRHVGEVNARRLARTYKNYTAFETTAMGALMPCDKANEKGNEAWMELTNIEG 599 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G + AIV+FYQ N + LL+EV+P SS I K +VFTGTL + R Sbjct: 600 IGPQVGSAIVDFYQEAHNREVLSVLLEEVTPLDEEPITTASSPIAEKTIVFTGTLAHMSR 659 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +A+ +LGA S LS+KTD+++ G GSKL KA++LGV++++EE +L L+++++ Sbjct: 660 DEAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLAKAEELGVEVIDEETWLQLIEEHD 718 >gi|153009084|ref|YP_001370299.1| NAD-dependent DNA ligase LigA [Ochrobactrum anthropi ATCC 49188] gi|166216221|sp|A6WZR6|DNLJ_OCHA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151560972|gb|ABS14470.1| DNA ligase, NAD-dependent [Ochrobactrum anthropi ATCC 49188] Length = 721 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/725 (46%), Positives = 473/725 (65%), Gaps = 21/725 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E L+ +A EL L +EI++HD+ Y+ +P I D+EYDALKRR DAI FP L R Sbjct: 5 PVEKLTEPEAVSELERLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLVR 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++ P+ ++G +V H+ P LSL ++ +D+R F+ +YRF DNSI Sbjct: 65 TDSPS---LRVGTAPVSKFAQVVHARPMLSLGNAFSDDDVRDFVGSVYRFLGPLPDNSIA 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT EPKIDG ++IRYE G + A RGDG +GE+V+ IR I IP L P ++EV Sbjct: 122 FTAEPKIDGLSMSIRYENGILISGATRGDGTTGENVTTNIRTIAEIPNRLPAGAPSVVEV 181 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGEVY++K+DFLALN++M A G++ Y NPRN A+G LR+L+ +R L FF + G+ Sbjct: 182 RGEVYMAKSDFLALNEQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEM 241 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S++ A Q M++ R GFPVN ++ + ++++Y + R+ L YDIDG+VYKV Sbjct: 242 SDMPADTQMGMVEIFREWGFPVNPLTKRLHGADELLAHYRAIGLERAQLDYDIDGVVYKV 301 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D LQ +LG R+RSPRW I+HKF +QA+T L IDIQ+GRTG LTPVARLEP+ +GG Sbjct: 302 DRLDLQTRLGFRSRSPRWAIAHKFPAEQATTILRGIDIQVGRTGALTPVARLEPITVGGV 361 Query: 367 LITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++TNATLHNEDYIKG+ G+ +R DIRVGD V+V+RAG+VIP++VD+++ +R DA Sbjct: 362 VVTNATLHNEDYIKGIGLKGERIRADEHDIRVGDTVIVQRAGDVIPQIVDVVLEKRKADA 421 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 PF FP CP+C S VR+ A +RCTGGL C+AQ +ER++HFVSR+AF+IEG Sbjct: 422 TPFVFPHECPVCHSHAVREEGE------AVYRCTGGLTCAAQAVERIRHFVSRNAFDIEG 475 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSINK 544 LG++Q++FFF +ED I+ PADIFTLQ+RQ S K+ENI GFG SV LYD+IN Sbjct: 476 LGEKQVEFFFHAEDDKLKIKSPADIFTLQQRQAESPLKKLENIEGFGATSVKKLYDAIND 535 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA--------HNNDDWL 596 RR I+L RF+F LGIRHVG A+ A+ YLSY F + + N+ W Sbjct: 536 RREIALHRFLFGLGIRHVGEVNAKRFARAYLSYAAFEEAALEAVPPKEGDRTDKGNEAWQ 595 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFT 655 LI V +G I+A+A+V+FY P N ++ L K V+P + S +E K +VFT Sbjct: 596 ELIAVEGIGSIVAEAVVDFYAEPHNREVLDNLFKAGVTPVDEVALVSTGSPVEGKTVVFT 655 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G+L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG+++++E+ + Sbjct: 656 GSLERMSRDEAKAMAERYGAKTAGSVSKKTDLVVAGPGAGSKLAKASELGIEVIDEDAWF 715 Query: 716 FLLQQ 720 L+ + Sbjct: 716 TLVGE 720 >gi|49474446|ref|YP_032488.1| NAD-dependent DNA ligase LigA [Bartonella quintana str. Toulouse] gi|81646941|sp|Q6FZ81|DNLJ_BARQU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49239950|emb|CAF26355.1| DNA ligase [Bartonella quintana str. Toulouse] Length = 719 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/719 (46%), Positives = 469/719 (65%), Gaps = 17/719 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD Y + +P I D+EYDAL+RR I FP+L RS Sbjct: 6 IKNLTALEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRS 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +KIG ++ K H+ LSL+ ++ ED+ +FI RI RF + + Sbjct: 66 DSPS---HKIGAPVSEKFEKSVHAQAMLSLDNAFSSEDICEFIVRIRRFLRLPATQILEM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYEKG+ V AA RGDG+ GE+V+A R I IP+VL P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYEKGRLVCAATRGDGYIGENVTANARTISDIPKVLRGEFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY+ + +F ALN G+ +ANPRNAA+G LR+L+P +R L+FF + G+ S Sbjct: 183 GEVYMRRENFQALNMSQQEKGKFVFANPRNAAAGSLRQLDPRITASRKLHFFAYACGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E FA Q EM++K++ GF +N + T I+SYY++++ R +L YDIDG+VYKV+ Sbjct: 243 ETFAASQMEMMKKLKEYGFFINPLTKSFKTLEEIISYYHDIEECRHSLSYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG +RSPRW ++HKF ++A L IDIQ+GRTG LTPVARL P+ IGG + Sbjct: 303 DLKLQMRLGFVSRSPRWAVAHKFPAEKAMALLEGIDIQVGRTGALTPVARLAPITIGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNA+LHNEDYIKG+ G+ +R GRDIRVGD V+V+RAG+VIP++VDII +R A Sbjct: 363 VTNASLHNEDYIKGIGHKGESIREGRDIRVGDTVIVQRAGDVIPQIVDIIAEKRPKGASA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP C S VR++ + RCTGGL C AQ +ER++HFVSR+AF+IEGLG Sbjct: 423 FVFPHLCPACGSHAVREVGE------SVRRCTGGLICPAQAIERIRHFVSRNAFDIEGLG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 K+Q++FFF +D A I PADIFTLQRRQ+ + ++EN+ GFG VSV LY++IN RR Sbjct: 477 KKQVEFFFHIQDEALCIHTPADIFTLQRRQEKALVRLENMEGFGTVSVRKLYNAINMRRK 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-------AQEINNIIAHNNDDWLSLIR 600 + L RF+F+LGIRH+G AR LA Y +Y F + + N+ WL L Sbjct: 537 VPLSRFLFALGIRHIGEVNARRLAHAYQNYTAFETVAMAATMPYDKVGEEGNEAWLELTN 596 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G + +AI++FYQ N + ALL+EV+P + SS I K +VFTGTL + Sbjct: 597 IEGIGPQVGEAIIDFYQEAHNREVLAALLREVTPLDEENVMTASSPIAGKTIVFTGTLAR 656 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A+ +LGA S LS+KTD+++ G GSKL KAQ LGV++++EE +L L++ Sbjct: 657 MSRDEAKALAERLGAKTSGSLSKKTDLLVAGSAVGSKLAKAQGLGVEVIDEEAWLQLIE 715 >gi|49475845|ref|YP_033886.1| NAD-dependent DNA ligase LigA [Bartonella henselae str. Houston-1] gi|81647763|sp|Q6G2R5|DNLJ_BARHE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49238653|emb|CAF27899.1| DNA ligase [Bartonella henselae str. Houston-1] Length = 716 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/719 (46%), Positives = 470/719 (65%), Gaps = 17/719 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD Y + +P I D+EYDAL+RR I FP+L R Sbjct: 6 IQNLTALEAASELEWLAKEITRHDVLYNRNDQPEISDAEYDALRRRNAEIEALFPELIR- 64 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P +KIG ++ K HS P LSL+ ++ ED+ +F+ R+ RF + + + Sbjct: 65 --PDSPSHKIGAPISEKFEKSVHSQPMLSLDNAFSSEDVSEFMERVRRFLRLPETQMLEI 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE+G+ V AA RGDG+ GE+V+A R I IP+VL P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYEQGRLVCAATRGDGYVGENVTANARTISDIPQVLQGKFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY+ + DF ALN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMRRADFQALNVNQQEKGKLAFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 EIFA+ Q M++K++ GF +N +++ + ++SYY++++ R L YDIDG+VYKV+ Sbjct: 243 EIFAESQMGMMEKLKEYGFVINPLIKKIKSLEELISYYHDIEERRHALSYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG +RSPRW I+HKF ++A T L IDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLMLQMRLGFVSRSPRWAIAHKFPAEKAMTVLEGIDIQVGRTGALTPVARLAPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ITNA+LHNEDYIKG+ + G+ +R G DIRVGD V+V+RAG+VIP+++DI+ +R DA Sbjct: 363 ITNASLHNEDYIKGIGSKGEPIREGNDIRVGDTVIVQRAGDVIPQIIDIVAEKRSKDASA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP C S VR++ A RCTGGL C AQ +ER++HFVSR+AF+IEGLG Sbjct: 423 FVFPYLCPACGSYAVREIGE------AVRRCTGGLICPAQAIERIRHFVSRNAFDIEGLG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 K+Q++FFF+ +D I PADIFTLQRRQ+ S +EN+ GFG VSV LYD+IN RR Sbjct: 477 KKQVEFFFQIQDETLCIHTPADIFTLQRRQEKSLVHLENMEGFGTVSVRKLYDAINARRK 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI-------NNIIAHNNDDWLSLIR 600 I L RF+F+LGIR+VG AR LA+ Y +Y F + + N+ W+ L Sbjct: 537 IPLSRFLFALGIRYVGEVNARRLARAYQNYTAFETAAMAATMPDDKVGKEGNEAWMELTN 596 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G + +AI++FY+ N + LL EV+P SS I K +VFTGTL + Sbjct: 597 IEGIGPQVGEAIIDFYKEVHNREVLSGLLCEVTPLDEESVMTASSPIAGKIIVFTGTLTR 656 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A+ +LGA S LS+KT++++ G GSKL KAQ+LGV++++EE +L L++ Sbjct: 657 MSRDEAKALAERLGAKTSGSLSKKTNLLVAGVGGGSKLTKAQELGVEVIDEEAWLQLIE 715 >gi|319408814|emb|CBI82471.1| DNA ligase [Bartonella schoenbuchensis R1] Length = 718 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/720 (46%), Positives = 474/720 (65%), Gaps = 16/720 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+ +A EL L +EI+ HD Y +P I D++YDAL+RR I FP+L R+ Sbjct: 6 VKNLTALEAASELEWLAKEIARHDVLYNNNDQPEISDAQYDALRRRNTEIEALFPELIRT 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ KIG ++ K H+ LSL+ ++ ED+ +F+ R+ RF + ++ Sbjct: 66 DSPS---YKIGAPVSEKFEKSVHAQAMLSLDNAFSAEDVSEFVERVRRFLRLPSTQTLEM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE+GK V AA RGDG++GE+V+ R I IP+VL P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYEQGKLVRAATRGDGYTGENVTTNARTISDIPKVLQGEFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVYI + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYIRQEDFQVLNINQQKEGKIAFANPRNAAAGSLRQLDSRITASRKLKFFAYAWGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ AK Q EM+ K++ GF VN + ++SYY+ ++ R +L YDIDG+VYKV+ Sbjct: 243 EMPAKSQMEMVNKLKEYGFIVNPFTKVFEKVEDLISYYHFIEEQRQSLSYDIDGVVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG +RSPRW I+HKF ++A+ L IDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLGLQMRLGFVSRSPRWAIAHKFPAEKATALLEGIDIQVGRTGALTPVARLAPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VDII ++R DA P Sbjct: 363 VTNATLHNEDYIKGVGRKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDIISSKRPKDAVP 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP C S VR++ A +RCTGGL CSAQ +ER++HFVSR+AF+IEGLG Sbjct: 423 FVFPHHCPACGSHAVREVGE------AVYRCTGGLICSAQAIERIRHFVSRNAFDIEGLG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 K+Q++FFF +D IR P DIFTL++RQ+ + T++ENI GFG +SV L+D+IN RR Sbjct: 477 KKQVEFFFNIQDETLCIRSPVDIFTLEKRQKKALTRLENIEGFGSLSVRKLFDAINARRE 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHN-----NDDWLSLIRV 601 I L RF+F+LGIRHVG A+ LA+ Y +Y F A + I+ H+ N++W LI + Sbjct: 537 IPLSRFLFALGIRHVGEVNAQRLARVYRNYTAFEAAVMAAIVPHDKTDEGNEEWTDLISI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G + +AI++FYQ N + ALL+EV+P S I K +VFTGTL + Sbjct: 597 EGIGVRVGRAIIDFYQEAHNRDVLSALLQEVTPLPEEAIATDYSPIAGKIIVFTGTLMSM 656 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+ +LGA S +S+KTD++I G GSKL KA++LGV+I++E+ + L+++Y Sbjct: 657 SRDEAKALAERLGAKTSGSISKKTDLLIAGLGAGSKLTKAKELGVEIIDEDSWSQLIKEY 716 >gi|307944884|ref|ZP_07660221.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4] gi|307771808|gb|EFO31032.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4] Length = 721 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/716 (45%), Positives = 468/716 (65%), Gaps = 13/716 (1%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + +EAL+ EQA EL L I+ HD Y+Q P I D++YDAL+RR AI FPDL Sbjct: 13 LDVEALTSEQAETELERLANAIAKHDKLYHQDDAPAISDADYDALRRRNTAIEARFPDLV 72 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--N 124 R + P+ +G + + K+ H +P LSL+ +N ED++ F+ R+ RF K D Sbjct: 73 RDDSPS---RNVGAAPSEAFSKIEHKVPMLSLDNAFNDEDVQDFVGRVRRFL-KFDPLMG 128 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 ++ T EPKIDG +++RYE G VYAA RGDG +GE+V+A + I IP+ LS + P++ Sbjct: 129 ALAVTAEPKIDGLSLSLRYEAGALVYAATRGDGTTGENVTANAKTISDIPQKLSGDAPDV 188 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG 242 +E+RGEVY++ DF LN M A G K +ANPRNAA+G LR+L ++IT R L FF + Sbjct: 189 VEIRGEVYMAHADFQVLNQRMEANGGKVFANPRNAAAGSLRQLK-SEITASRPLKFFAYA 247 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G S + A Q M+++M+ GF +N +++ T +++ Y+ ++ R+TL YDIDG+ Sbjct: 248 WGDMSALPADTQMGMVEQMKVWGFQINPLMKRCETVEELLAVYHGIEEDRATLGYDIDGV 307 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYKVD LQ++LG +RSPRW I+HKF ++A T L +IDIQ+GRTG LTPVA+LEPV Sbjct: 308 VYKVDRLDLQQRLGFVSRSPRWAIAHKFPAEKAYTILNEIDIQVGRTGALTPVAKLEPVT 367 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG +++NATLHNEDYIKG+ G+ +RGG+D+R GD V V+RAG+VIP++VD+ +++R Sbjct: 368 VGGVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRPGDTVQVQRAGDVIPQIVDVDLSKRK 427 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 A+PF FPS CP C S VR+ NPKTG+L A RCTG L C AQ ERLKHFVSR+AF+ Sbjct: 428 EGAEPFEFPSVCPRCGSHAVREENPKTGRLDAVRRCTGALICPAQATERLKHFVSRNAFD 487 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEG G +Q+D FF ++ ADIFTL+ R + S TK+ N G+G VS NL+++I Sbjct: 488 IEGFGDKQVDAFFADG----LVKTAADIFTLEERDKQSLTKLRNREGWGTVSAKNLFEAI 543 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 N +RNI L R IF LGIRHVG A+ LA+ Y S+Q F + N + W L + Sbjct: 544 NAKRNIDLHRLIFGLGIRHVGEGNAKLLARAYGSWQAFYDAMVKAHDKNGEAWEDLNAID 603 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G I+A+A+ EF+ N ++ALL ++SP + S + K +VFTG L+++ Sbjct: 604 GIGHIVAEALTEFFAEEHNREQLDALLAQISPKQVEQIDSSGSPVAGKTVVFTGALERMT 663 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ +LGA VS +S+KTD+++ G GSKL+KAQ L ++++ E+ + L+ Sbjct: 664 RDEAKAMAERLGAKVSGSVSKKTDLLVAGPGAGSKLKKAQGLQIEVITEDVWFDLV 719 >gi|254470147|ref|ZP_05083551.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062] gi|211960458|gb|EEA95654.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062] Length = 722 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/713 (44%), Positives = 468/713 (65%), Gaps = 7/713 (0%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 IEAL+ E+A EL L + I+ +D+ Y+ PI+ D+ YD L+RR A+ FP+L R+ Sbjct: 11 IEALNAEEAALELERLARLIAEYDEAYHTQDAPIVDDATYDGLRRRNAALEAKFPELVRA 70 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSI 126 + P+ N++GG + K+TH++P LSL+ ++ ED++ FI ++ RF K D ++ Sbjct: 71 DSPS---NRVGGAVAEGFGKITHAVPMLSLDNAFSDEDVQDFIGKVRRFL-KYDPLMGAL 126 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 T EPKIDG +++RYE GK VYAA RGDG +GE+V+A I IP+ L +P+++E Sbjct: 127 AVTAEPKIDGLSLSLRYESGKLVYAATRGDGATGENVTANALTIQDIPQELPAGVPDVVE 186 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S DF ALN M A G K +ANPRNAA+G LR+LNP TR L FF + G Sbjct: 187 VRGEVYMSHADFAALNARMEANGGKVFANPRNAAAGSLRQLNPEITKTRPLKFFAYAWGD 246 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE+ A Q M++ GF +N +++ T ++ Y+ ++ RS L YDIDG+VYK Sbjct: 247 MSEVPADTQMGMVELFGAWGFQINPLMKRCETVEALLKVYHGIEEDRSGLGYDIDGVVYK 306 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD LQ +LG +RSPRW I+HKF ++A T L I+IQ+GRTG LTPVA+LEPV +GG Sbjct: 307 VDRLDLQGRLGFVSRSPRWAIAHKFPAERAFTTLNAIEIQVGRTGALTPVAKLEPVTVGG 366 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYIKG+ G+ +R +D+RVGD V+++RAG+VIP++VD+ +++R D Sbjct: 367 VVVSNATLHNEDYIKGIGQDGESIRDSKDLRVGDTVIIQRAGDVIPQIVDVDLSKRAEDV 426 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 QP+ FP+ CP+C S +R+ NP +GK+ A RCTGGL C AQ +E+LKHFVSR+AF+IEG Sbjct: 427 QPYEFPTECPVCNSHAIRETNPNSGKVDAVRRCTGGLICPAQAVEKLKHFVSRNAFDIEG 486 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++Q++ F++ + IR PADIFTL R + S K+ + GFG VS L+++I+ + Sbjct: 487 LGEKQMEAFYEYDMDKGGIRTPADIFTLAERDKVSLNKLRSREGFGAVSARKLFEAIDSK 546 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I L R IF LGIRHVG A+ LA+ Y S+Q F + ++ + L + +G Sbjct: 547 RQIELNRVIFGLGIRHVGEGNAKLLARAYSSWQGFYDAMIAATDTTSEAYRELNDIDGIG 606 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A A+VEF+ N+ A+ AL+++++P S + K LVFTG+L+++ R + Sbjct: 607 GTVANALVEFFAEEHNLTALAALMEQITPLDVVVADTSGSPVAGKTLVFTGSLERMSRDE 666 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ LGA VS +S+KTD++I G GSKL KAQ LG+ +++E+ + L+ Sbjct: 667 AKARAESLGAKVSGSVSKKTDLVIAGPKAGSKLTKAQSLGIDVISEDDWFELV 719 >gi|121602535|ref|YP_989218.1| NAD-dependent DNA ligase LigA [Bartonella bacilliformis KC583] gi|166215397|sp|A1UTB5|DNLJ_BARBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120614712|gb|ABM45313.1| DNA ligase, NAD-dependent [Bartonella bacilliformis KC583] Length = 717 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/719 (45%), Positives = 475/719 (66%), Gaps = 18/719 (2%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ +A +EL L +EI+ HD Y + +P I D+ YDAL+RR I FP+L R++ P Sbjct: 8 LTALEAERELEWLAKEIARHDVLYNNHDQPEISDARYDALRRRNIEIETLFPELVRADSP 67 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + K+G ++ K H+ LSL+ ++ ED+ +F+ R+ RF + ++ T E Sbjct: 68 S---YKVGAPISERFEKSVHAQAMLSLDNAFSSEDVHEFVERVRRFLRLPVTKTLEMTAE 124 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++RYEKGK V AA RGDG+ GE+V+ R + IP+VL + P+I+EVRGEV Sbjct: 125 PKIDGLSLSLRYEKGKLVCAATRGDGYVGENVTVNARTLSDIPQVLQGDFPDILEVRGEV 184 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ +DF LN + G+ +ANPRNAA+G LR+L+ T +T R L FF +G G+ SE+ Sbjct: 185 YMRHSDFQDLNVDQQEKGKLVFANPRNAAAGSLRQLD-TRMTARRKLKFFAYGWGEVSEM 243 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK Q EM++K++ GF +N + ++SYY+ ++ R L YDIDG+VYKV++ Sbjct: 244 PAKSQMEMVKKLKEYGFVINPLTKVFKAVEDLISYYHFIEEGRQHLDYDIDGVVYKVNDL 303 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ +LG +RSPRW I+HKF ++A L +IDIQIGRTG LTPVARL P+ +GG ++T Sbjct: 304 LLQTRLGNVSRSPRWAIAHKFPAEKAMALLENIDIQIGRTGALTPVARLAPITVGGVVVT 363 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NA+LHNEDYIKGL + + +R GRDIR+GD V+V+RAG+VIP+++D+I+ +R A PF Sbjct: 364 NASLHNEDYIKGLGSKSESIREGRDIRIGDTVIVQRAGDVIPQIIDVIIEKRPKGASPFV 423 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FPS CP C S VR++ A RCTGGL C AQ +ER++HFVSR+AF+IEGLG++ Sbjct: 424 FPSLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVSRNAFDIEGLGEK 477 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 Q++FFF ++D I PADIFTLQ+RQ+ S T++EN+ GFG +SV LYD+IN RR I Sbjct: 478 QVEFFFHAQDETLRIHSPADIFTLQKRQEKSLTRLENMEGFGTLSVRKLYDAINARRKIP 537 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHN-----NDDWLSLIRVPL 603 L RF+F+LGIRHVG AR LA+ Y +Y F + ++ N N++WL L + Sbjct: 538 LSRFLFALGIRHVGEVNARRLARAYQNYNAFETVAMTALMPCNKEDKGNEEWLELTSIEG 597 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G + +AI++FYQ N + +LL+EV+P S + K +VFTGTL + R Sbjct: 598 IGVRVGKAIIDFYQETHNRDVLSSLLQEVTPLPEEAAVADYSPVAGKTIVFTGTLVHMSR 657 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + +LGA S+ +S+KTD+++ G GSKL KA++LG++IM+EE +L L+ +++ Sbjct: 658 DEVKALAERLGAKASSSISKKTDLLVAGIGAGSKLTKAKELGIEIMDEESWLQLINEHH 716 >gi|319404500|emb|CBI78105.1| DNA ligase [Bartonella rochalimae ATCC BAA-1498] Length = 725 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/723 (46%), Positives = 473/723 (65%), Gaps = 22/723 (3%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD Y++ +P I D+EYDAL RR + I FP+L R+ Sbjct: 6 IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +KIG ++ K H+ P LSL+ +N ED+ +FI RI RF + + +I Sbjct: 66 DSPS---SKIGAPISEKFEKSIHAQPMLSLDNAFNFEDVSEFIERIRRFLRLPETQTIEM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE GK V A RG+G GE+V+ R I IP +L N P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVRAITRGNGSIGENVTTNARTIADIPEILQGNFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY+ + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGQKDFQLLNINQQKEGKLVFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A+ Q M++K++ GF +N + ++SYY+ ++ R +L YDIDG+VYKV+ Sbjct: 243 EMPAESQIGMMKKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG ARSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLMLQTRLGFVARSPRWAIAHKFPAEKAIAFLEDIDIQVGRTGALTPVARLTPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ITNA+LHNEDYIKG+ G+++R GRDIRVGD V+++RAG+VIP++VD++V +R D Sbjct: 363 ITNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRSKDTPA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C S VR+ G+ V RCTGGL CSAQ +ER+ HFVSR+AF+IEG G Sbjct: 423 FIFPHVCPVCGSHAVRE----EGETV--RRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++FFF ++D IR P DIFTLQRRQ+ S ++EN+ GFG VSV LY++IN RR Sbjct: 477 RKQVEFFFHAQDKTLCIRSPVDIFTLQRRQENSLRRLENMEGFGVVSVRKLYNAINARRE 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601 ISL RF+F+LGIRH+G A+ LA+ Y +Y F I + N+ W L + Sbjct: 537 ISLSRFLFALGIRHIGEVKAQRLARAYQNYIAFETAAMTAIMPPDKNSEGNEIWKELTNI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTL 658 +G + +AI++FYQ N + ALLKEV+P HE ++ S I K +VFTGTL Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRDVLSALLKEVTP---LHEAPIAIDYSPIVEKIIVFTGTL 653 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + R +A+ +LGA S +S+KTD+++ G GSKL KAQQLG+++++E+ +L L+ Sbjct: 654 EHMSRDEAKSLAERLGAKTSNSISKKTDLLVAGFGAGSKLVKAQQLGIEVLDEKNWLKLI 713 Query: 719 QQY 721 ++ Sbjct: 714 DEH 716 >gi|319405996|emb|CBI79627.1| DNA ligase [Bartonella sp. AR 15-3] Length = 718 Score = 635 bits (1638), Expect = e-180, Method: Compositional matrix adjust. Identities = 329/720 (45%), Positives = 469/720 (65%), Gaps = 22/720 (3%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD Y++ +P I D+EYDAL+RR + I FP+L R Sbjct: 6 IKNLTALEAEGELEWLAKEIARHDVLYHRDDQPEISDAEYDALRRRNEEIEALFPELVRV 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +KIG ++ K H+ P LSL+ +N +D+ +FI RI RF + + I Sbjct: 66 DSPS---SKIGAPISEKFEKSIHAQPMLSLDNAFNFKDVSEFIERIRRFLRFPETQIIEM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE GK V A RG+G+ GE+V+ R I IP++L P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVCAITRGNGYIGENVTTNARTIADIPQILQGKFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY+ + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGQKDFQLLNISQQKEGKLAFANPRNAAAGSLRQLDSQITASRNLKFFAYAWGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A+ Q EM++K++ GF +N + ++SYY+ ++ R +L YDIDG+VYKV+ Sbjct: 243 EMPAESQIEMMEKLKEYGFIINPLTKVFEKVEDLISYYHSIEKCRQSLNYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG +RSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLMLQTRLGFVSRSPRWAIAHKFPAEKAIALLEDIDIQVGRTGALTPVARLTPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNA+LHNEDYIKG+ G+++R GRDIRVGD V+++RAG+VIP++VD++V +R Sbjct: 363 VTNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPKGTPT 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C S VR+ A RCTGGL CSAQ +ER+ HFVSR+AF+IEG G Sbjct: 423 FIFPRVCPVCGSHAVREEGE------AIRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++FFF +D I PADIFTLQRRQ+ S ++EN+ GFG VSV LY++IN RR Sbjct: 477 RKQVEFFFHIQDKTLCIHSPADIFTLQRRQENSLRRLENMEGFGVVSVRKLYNAINARRK 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNNDDWLSLIRV 601 ISL RF+F+LGIRH+G A+ LA+ Y +Y F + I N+ W+ L + Sbjct: 537 ISLSRFLFALGIRHIGEVNAQRLARAYQNYAAFETAAMSAIMPSGKNIEGNEIWMELTNI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTL 658 +G + +AI++FYQ N + ALLKEV+P HE V+ S + K +VFTGTL Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRNVLLALLKEVTP---LHEMPVAIDYSPVVGKTIVFTGTL 653 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 Q + R +A+ +LGA S +S+KTD+++ G GSKL KAQQLG+++++E+ +L L+ Sbjct: 654 QHMSRDEAKSLAERLGAKTSNSISKKTDLLVAGSGAGSKLIKAQQLGIEVLDEKSWLKLI 713 >gi|319407493|emb|CBI81141.1| DNA ligase [Bartonella sp. 1-1C] Length = 725 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 332/720 (46%), Positives = 470/720 (65%), Gaps = 22/720 (3%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD Y++ +P I D+EYDAL RR + I FP+L R+ Sbjct: 6 IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +KIG ++ K H+ P LSL+ +N ED+ +FI RI RF + + I Sbjct: 66 DSPS---SKIGAPISEKFEKSIHAQPMLSLDNAFNFEDVSEFIERIRRFLRLPETQIIEM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE GK V A RG+G GE+V+ R I IP++L N P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVRAITRGNGSIGENVTTNARTIADIPQILQANFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY+ + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGQKDFQLLNINQQKEGKLVFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A+ Q M++K++ GF +N + ++SYY+ ++ R +L YDIDG+VYKV+ Sbjct: 243 EMPAESQIGMMKKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG ARSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLMLQTRLGFVARSPRWAIAHKFPAEKAIAFLEDIDIQVGRTGALTPVARLTPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNA+LHNEDYIKG+ G+ +R GRDIRVGD V+++RAG+VIP++VD++V +R D Sbjct: 363 VTNASLHNEDYIKGIGHKGEPIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPKDTPA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C S VR+ G+ V RCTGGL CSAQ +ER+ HFVSR+AF+IEG G Sbjct: 423 FIFPHVCPVCGSHAVRE----EGETV--RRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++FFF ++D IR P DIFTLQRRQ+ S ++EN+ GFG VSV LY++IN RR Sbjct: 477 RKQVEFFFHAQDKMLCIRSPVDIFTLQRRQENSLKRLENMEGFGVVSVRKLYNAINARRE 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNNDDWLSLIRV 601 ISL RF+F+LGIRH+G A+ LA+ Y +Y F + I N+ W+ L + Sbjct: 537 ISLSRFLFALGIRHIGEVKAQRLARAYQNYTAFETAAMSAIMPPDKNNEGNEIWVELTNI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTL 658 +G + +AI++FYQ N + ALLKEV+P HE V+ S I K + FTGTL Sbjct: 597 EGIGFRVGKAIIDFYQEVHNRDILSALLKEVTP---LHEAPVTIDYSPIVGKIITFTGTL 653 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + R +A+ +LGA S +S+KTD+++ G GSKL KAQQLG+++++E+ +L L+ Sbjct: 654 EHMSRDEAKSLAERLGAKTSNSISKKTDLLVAGFGAGSKLTKAQQLGIEVLDEKNWLKLI 713 >gi|319899147|ref|YP_004159240.1| DNA ligase [Bartonella clarridgeiae 73] gi|319403111|emb|CBI76669.1| DNA ligase [Bartonella clarridgeiae 73] Length = 718 Score = 629 bits (1621), Expect = e-178, Method: Compositional matrix adjust. Identities = 328/720 (45%), Positives = 466/720 (64%), Gaps = 22/720 (3%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD YY+ +P I D+EYDAL+RR AI + FP+L R+ Sbjct: 6 IKNLTALEAASELEWLAKEIARHDVLYYRDDQPEISDAEYDALRRRNGAIENLFPELIRA 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P KIG ++ K H+ P LSL+ +N +D+ +F+ RI RF + + I Sbjct: 66 DSPT---FKIGAPISEKFEKSVHAQPMLSLDNAFNFKDVSEFVERIRRFLRFPETQIIKM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE GK V A RG+G+ GE+V+ R I IP+VL P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYETGKLVRAVTRGNGYIGENVTTNARTIADIPQVLQGKFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY+ + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGQKDFQLLNISQQKEGKLAFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEMS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ + Q EM+++++ GF +N + ++SYY+ ++ R +L YDIDG+VYKV+ Sbjct: 243 EMPVESQMEMMERLKEYGFIINPLTKVFEKLEDLISYYHFIEECRQSLDYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG +RSPRW I+HKF ++A L IDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLVLQTRLGFVSRSPRWAIAHKFPAEKAIALLESIDIQVGRTGALTPVARLTPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNA+LHNEDYIKG+ + +R GRDIRVGD V+++RAG+VIP++VD++V +R D Sbjct: 363 VTNASLHNEDYIKGIGYKNEPIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPRDTPA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C S VR+ K A RCTGGL CSAQ +ER+ HFVSR+AF+IEG G Sbjct: 423 FVFPHLCPVCGSHAVRE------KGEAVRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++FFF ++D I PADIFTLQRRQ+ S ++EN+ GFG VSV LY++IN RR Sbjct: 477 RKQVEFFFHAQDETLCIHSPADIFTLQRRQENSLKRLENMEGFGVVSVRKLYNAINARRK 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601 +SL RF+F+LGIRHVG A+ LA+ Y +Y F + I + N+ W+ L + Sbjct: 537 VSLSRFLFALGIRHVGEVNAQRLARAYQNYTAFETAAMSAIMPSDKFSKGNEIWVELTNI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTL 658 +G + +AI++FYQ N + ALLKEV+P HE V S + K +VFTGTL Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRDVLLALLKEVTPF---HEVPVEIDYSPLAGKIIVFTGTL 653 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + R +A+ +LGA S +S+K D ++ G GSKL KAQQLGV++++E+ +L L+ Sbjct: 654 EHMSRDEAKALAERLGAKTSNSISKKVDFLVSGFGAGSKLAKAQQLGVEVLDEKSWLKLI 713 >gi|118590881|ref|ZP_01548281.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614] gi|118436403|gb|EAV43044.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614] Length = 750 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 319/714 (44%), Positives = 467/714 (65%), Gaps = 13/714 (1%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+AL+ E+A+ EL L EI+ HD Y+Q P+I D++YDAL+RR +I FP+L Sbjct: 44 IDALTQEEAQVELKRLAAEIAEHDRRYHQEDAPVISDADYDALRRRNASIEARFPNLILD 103 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSI 126 +GP ++G K+TH +P LSL+ +N +D+R F+ R+ RF K D ++ Sbjct: 104 ---DGPSAQVGAAPASGFGKITHRVPMLSLDNAFNDDDVRDFVGRVRRFL-KYDPLMGAL 159 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 T EPKIDG +++RYE G VYAA RGDG +GE+V+ + I IP LS +P+++E Sbjct: 160 AVTAEPKIDGLSLSLRYENGTLVYAATRGDGTTGENVTENAKTIKDIPEKLSGTVPDVVE 219 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244 VRGEVY++ DF ALN+ M A G K +ANPRNAA+G LR+L ++IT R L FF + G Sbjct: 220 VRGEVYMAHKDFQALNERMAANGGKVFANPRNAAAGSLRQLK-SEITASRPLRFFAYAWG 278 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S + Q+ M++++ GF +N +R+ T ++ Y+ ++ R+ L YDIDG+VY Sbjct: 279 EMSALPEDTQFGMVKQLEAWGFQINPLMRRCETVEELLGVYHGIEESRAQLDYDIDGVVY 338 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ++LG +RSPRW I+HKF +QA T L DI+IQ+GRTG LTPVA+LEP+ +G Sbjct: 339 KVDRLDLQERLGFVSRSPRWAIAHKFPAEQAYTVLNDIEIQVGRTGALTPVAKLEPITVG 398 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYIKG+ G+ +RGG+D+R+GD V ++RAG+VIP++VDI +++R Sbjct: 399 GVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRIGDTVKIQRAGDVIPQIVDIDLDKRPEG 458 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+ F FP+ CP C S VR+ KTG+ A RCTGGL C AQ E+LKHFVSR+AF+IE Sbjct: 459 AEAFEFPTICPACGSHAVREEKEKTGRRDAVRRCTGGLICPAQATEKLKHFVSRNAFDIE 518 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G G +Q+D F+K + PADIFTL+ R + S TK+ N G+G VS NL+++IN Sbjct: 519 GFGDKQVDAFYKEG----LVMAPADIFTLEERDKRSLTKLRNREGWGAVSAKNLFEAINA 574 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RR I L RFIF+LGIRHVG A+ LA+ Y S+ F + ++ W L + + Sbjct: 575 RREIDLHRFIFALGIRHVGEGNAKLLARAYGSWAAFYAAMKAAHDTESEAWAELNDIDGI 634 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G I+A+A+ EF+ N+ ++ALL EVSP S + K +VFTG+L+++ R Sbjct: 635 GHIVAEALAEFFAEQHNLDQLDALLVEVSPKDAEKINASGSPVAGKTVVFTGSLERMTRD 694 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ + GA + +S+KTD+++ G GSKL+KAQ+L +++++E+ + L+ Sbjct: 695 EAKAMAERFGAKTAGSVSKKTDLVVAGPGAGSKLKKAQELEIEVISEDDWFDLV 748 >gi|254502790|ref|ZP_05114941.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11] gi|222438861|gb|EEE45540.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11] Length = 725 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 318/716 (44%), Positives = 470/716 (65%), Gaps = 13/716 (1%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I + L+ E A+ EL L EI+ HD Y+Q P I D++YDAL+RR AI FPDL Sbjct: 16 IAVLDLTPEAAKAELERLASEIAEHDRRYHQEDAPTISDADYDALRRRNSAIEARFPDLI 75 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--N 124 + +GP ++G K+TH +P LSL+ ++ +D+R F+ R+ RF K D Sbjct: 76 LA---DGPSAQVGAAPASGFGKITHRVPMLSLDNAFSDDDVRDFVGRVRRFL-KFDPLMG 131 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 ++ T EPKIDG +++RYE GK VYAA RGDG +GE+V+A + I IP L+ ++ ++ Sbjct: 132 ALAVTAEPKIDGLSLSLRYEDGKLVYAATRGDGTTGENVTANAKTITDIPHTLAGSVLDV 191 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG 242 +EVRGEVY++ DF ALN M+A G K +ANPRNAA+G LR+L ++IT R L FF + Sbjct: 192 VEVRGEVYMAHKDFEALNARMVANGGKVFANPRNAAAGSLRQLK-SEITASRPLRFFAYA 250 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ S + Q M+ ++ GF +N +++ T +++ Y+ ++ R+ L YDIDG+ Sbjct: 251 WGEMSTLPKDTQDGMVAQLAAWGFQINPLMKRCETVEELLAVYHGIEENRAQLDYDIDGV 310 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYKVD LQ++LG +RSPRW I+HKF +QA T L DI+IQ+GRTG LTPVA+LEP+ Sbjct: 311 VYKVDRLDLQERLGFVSRSPRWAIAHKFPAEQAWTVLNDIEIQVGRTGALTPVAKLEPIT 370 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG +++NATLHNEDYIKG+ G+ +RGG+D+R GD V ++RAG+VIP++VD+ +++R Sbjct: 371 VGGVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRKGDAVKIQRAGDVIPQIVDVDLDKRL 430 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 A+P+ FP+ CP C S VR+ N KTG+ A RCTGGL C AQ E+LKHFVSR+AF+ Sbjct: 431 DGAEPYEFPTRCPRCNSHAVREENEKTGRKDAVRRCTGGLICPAQATEKLKHFVSRNAFD 490 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEG G +Q+D F++ + + ADIFTL R + S TK+ N G+G VS NL+++I Sbjct: 491 IEGFGDKQVDAFYQDD----LVMTAADIFTLAERDKQSLTKLRNREGWGAVSAKNLFEAI 546 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + RR I L RFIF+LGIRHVG A+ LA+ Y S+ NF + + H ++ W L + Sbjct: 547 DARREIDLHRFIFALGIRHVGEGNAKLLARAYGSWANFYKAMTEASDHGSEAWAELNDID 606 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G I+A A+VEF+ N ++ALL+EV+P+ S + K +VFTG+L+++ Sbjct: 607 GIGHIVADALVEFFAENHNREQLDALLQEVTPTDAEKIDASGSPVAGKTVVFTGSLERMT 666 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ + GA VS +S+KTD+++ G GSKL+KA +L +++++E+ + L+ Sbjct: 667 RDEAKAMAERFGAKVSGSVSKKTDLVVAGPGAGSKLKKASELEIEVISEDDWFDLV 722 >gi|328542977|ref|YP_004303086.1| DNA ligase, NAD(+)-dependent [polymorphum gilvum SL003B-26A1] gi|326412723|gb|ADZ69786.1| DNA ligase, NAD(+)-dependent [Polymorphum gilvum SL003B-26A1] Length = 721 Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust. Identities = 330/721 (45%), Positives = 474/721 (65%), Gaps = 8/721 (1%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 +K +E+LS ++A EL+ L EI+ HD Y+ P + D+EYDAL+RR AI Sbjct: 3 EKSAAAAVESLSRQEAEAELARLAAEIAAHDQRYFAEDAPTVSDAEYDALRRRNAAIEER 62 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FPDL R + P+ +IG + KVTH+IP LSL+ ++ +D+R F+ R+ RF + Sbjct: 63 FPDLVREDSPSA---RIGAAPSEGFGKVTHAIPMLSLDNAFSDDDVRDFVARVRRFLRLD 119 Query: 122 D-DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 ++ T EPKIDG +++RYE G+ V AA RGDG GE+V+A R I IP L Sbjct: 120 PLMGALGVTAEPKIDGLSLSLRYEGGRLVSAATRGDGTVGENVTANARTIADIPHRLPAG 179 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF 238 +PE++EVRGEVY++ DF ALN M A G K +ANPRNAA+G LR+LNP DIT R L F Sbjct: 180 VPEVVEVRGEVYMAHADFAALNARMAANGGKVFANPRNAAAGSLRQLNP-DITAARPLKF 238 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + G+ SE+ Q EM+ + GFPVN + + ++ Y+ ++ R+TL YD Sbjct: 239 FAYAWGEMSEVPRATQMEMVSLIGAWGFPVNPRMVLCRSVEELIDVYHAIEEERATLGYD 298 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD LQ +LG +RSPRW I+HKF ++A T L DI+IQ+GRTG LTPVA+L Sbjct: 299 IDGVVYKVDRLDLQARLGFVSRSPRWAIAHKFPAEKAFTILRDIEIQVGRTGALTPVAKL 358 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GG +++NATLHNEDYI+G+ G+ +RGG+D+R+GD V ++RAG+VIP+V+D+ + Sbjct: 359 EPVTVGGVVVSNATLHNEDYIRGIGQDGEPIRGGKDLRIGDTVQIQRAGDVIPQVIDVDL 418 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 +R DA PF+FP+ CP+C S VR++N KTG+ A RCTGGL C+AQ E+LKHFVSR Sbjct: 419 AKRPADAVPFAFPTVCPVCGSHAVREINAKTGRPDAVRRCTGGLVCAAQAKEKLKHFVSR 478 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT-KIENILGFGDVSVTN 537 +AF+IEGLG +Q++FF+ IR PADIFTL+ R S K++N G+G+ S N Sbjct: 479 NAFDIEGLGDKQVEFFYDLPPEEGGIRTPADIFTLEARDAASPIRKLKNRDGWGETSARN 538 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L+ +I+ RR + L RFIF+LGIRHVG A+ LA+ Y S+ FA + H +D W Sbjct: 539 LFAAIDARRRVDLNRFIFALGIRHVGEGNAKLLARAYGSWDAFAAAMRAAADHGSDAWAE 598 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 L + VG+++A+A+V+F+ P N A++ALL EV+P S + K +VFTG Sbjct: 599 LNAIDGVGEVVAEAVVQFFAEPHNREALDALLAEVTPLDAEKVAAEGSPVAGKTVVFTGA 658 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L+++ R +A+ +LGA V+ +S+KT +++ G GSKL+ AQ+L ++++ E+ + L Sbjct: 659 LERMTRDEAKAMAERLGAKVAGSVSKKTSLVVAGPGAGSKLKTAQELDIEVITEDDWFDL 718 Query: 718 L 718 + Sbjct: 719 V 719 >gi|304392246|ref|ZP_07374188.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130] gi|303296475|gb|EFL90833.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130] Length = 716 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 311/717 (43%), Positives = 458/717 (63%), Gaps = 12/717 (1%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 R+++P L+ EQA +EL++L EI+ HD Y+ P I D YD L++R AI FP Sbjct: 7 REIVP-RKLTDEQAAEELAALASEIAEHDARYHNDDAPTISDGAYDTLRKRNTAIEERFP 65 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 DL R + P+ N +G + K+TH +P LSL+ ++ D+ F + RF K+ Sbjct: 66 DLVREDSPS---NNVGSPVQSKFDKITHKVPMLSLDNAFDDGDVADFSASVRRFLNWKEG 122 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIP 182 + + FT EPKIDG + +RYE+G+ V AA RGDG GE+V+A R + IPR LS N+P Sbjct: 123 DPLTFTAEPKIDGLSLALRYERGELVSAATRGDGQVGENVTANARTVKDIPRKLSGGNVP 182 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH 241 +I+E+RGEVYI K DF ALN EM A G++ Y NPRN A+G LR+L+ +R L FF + Sbjct: 183 DIVEIRGEVYIGKADFAALNVEMEAAGKQLYVNPRNTAAGSLRQLDSRITASRPLKFFAY 242 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+ S++ A Q+ M+++M GF N + + +V++Y ++ R+ L YDIDG Sbjct: 243 AWGEMSKLPADTQFAMIEQMAAWGFSTNPLTARLESVEALVAHYRTIEESRAGLDYDIDG 302 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD+ LQ +LG +R PRW I+HKF + A+T L +I+IQIGRTG L+PVARL+PV Sbjct: 303 VVYKVDDLGLQGRLGFASRVPRWAIAHKFPAELATTILREIEIQIGRTGALSPVARLDPV 362 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG +++NATLHNEDYI G+ ++G+ +R GRD+R+GD V + RAG+VIPKV+D+ +++R Sbjct: 363 TVGGVVVSNATLHNEDYIAGVGSNGEPIREGRDLRIGDTVTIFRAGDVIPKVMDVDLSKR 422 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 +PF FP+ CP C S VR ++ KTG+ + RCTGG C AQ +E +KHFVSR+AF Sbjct: 423 TA-KEPFEFPTVCPACGSPAVRPIDEKTGRADSVRRCTGGFICPAQAVEGIKHFVSRNAF 481 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I+G G +Q + F + + PADIFTL+ R + S ++EN G+G S L+D+ Sbjct: 482 DIDGFGDKQAELFHE----LGMVMNPADIFTLRERDKRSLKRLENRDGYGKTSANKLFDA 537 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I+ RR I L RFIF+LGIRHVG A+ LA++Y I+ + W+ ++ + Sbjct: 538 IDDRRKIDLHRFIFALGIRHVGEGNAKLLARHYRDADTLLAAIDAAQDREGEAWVEMLDI 597 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 G+ A A+++F +P V+ALL EV+P+ + SS I K +VFTGTL++ Sbjct: 598 DGFGETAATALLDFMADPNRRGVVDALLTEVTPNPVEQVAS-SSPIAGKTIVFTGTLEQT 656 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ +LGA VS +S KTD+++ G+ GSKL+KA +LGV ++E+ +L L+ Sbjct: 657 TRSEAKAVAERLGAKVSGSVSAKTDLLVAGEKAGSKLKKAAELGVDTLDEQGWLDLV 713 >gi|323136604|ref|ZP_08071685.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242] gi|322397921|gb|EFY00442.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242] Length = 705 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 300/714 (42%), Positives = 463/714 (64%), Gaps = 29/714 (4%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + ++ LS +AR E + L ++I+ +D+ YY+ P++ D+EYDA +RR +A+ AFP+L Sbjct: 10 LSVDELSPAEARAEHARLGEDIARYDEAYYREDAPLVPDAEYDAARRRYEALEKAFPELV 69 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P K+G + + KV H++P LSL +++ E++ F+ R+ RF + + Sbjct: 70 ---TPESLTRKVGAKPSEKFAKVKHAVPMLSLGNVFSDEEVFDFVARVRRFLGLGERARL 126 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG ++RYE G+ AA RGDG+ GEDV+A IR + IP L + P+++E Sbjct: 127 AFTAEPKIDGLSCSLRYEGGRLAQAATRGDGYEGEDVTANIRTLREIPHKLHGDAPDVLE 186 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY++ DF ALN+ A G+ P+ANPRNAA+G LR+L+P R L+FF +G G+ Sbjct: 187 VRGEVYMTHADFAALNERQTAAGKPPFANPRNAAAGSLRQLDPKITAGRPLHFFAYGWGE 246 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE+ + Q+ +L+ LG VN R + ++++Y +++ R+TL YDIDG+VYK Sbjct: 247 ASELPGETQWSVLEAFGRLGLKVNPLTRLCDGAEEMLAHYRAIEARRATLGYDIDGVVYK 306 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ SLQ++LG +R+PRW +HKF ++A+T L DI+IQ+GRTG LTPVARLEPV +GG Sbjct: 307 VDDISLQERLGFVSRAPRWAAAHKFPAERATTILRDIEIQVGRTGALTPVARLEPVTVGG 366 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNED I +DIRVGD V+V+RAG+VIP++V+++ +R A Sbjct: 367 VVVSNATLHNEDEI-----------ARKDIRVGDTVVVQRAGDVIPQIVEVVTEKRPHGA 415 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +P+ FP CP C S +R+++ KTG+ RCTG L C AQ +ERLKHF SR+AF+IEG Sbjct: 416 KPYHFPHVCPRCGSAALREIDEKTGEADVVRRCTGSLVCPAQAVERLKHFASRNAFDIEG 475 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q+++F+ D I+ +DIFTL+ R + S TKI+N GFG+ SV NL+ +I R Sbjct: 476 LGDRQIEYFY---DEGL-IKTASDIFTLEERDRASLTKIKNREGFGETSVRNLFAAIEAR 531 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I + RF+++LGIRHVG AR LA+++ +++ +E + + + VG Sbjct: 532 RTIPINRFLYALGIRHVGETNARRLARHFGDFESL-RETAREADPGTEARARIDSIDGVG 590 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKI 661 ++A+A+ +F+ P N ++ALL +V+ P I SS + K +VFTG L+++ Sbjct: 591 PVVAEALHDFFAEPHNEKELDALLSQVTLEPMPEIAS-----SSPVAGKTVVFTGALERL 645 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+ + GA V+A +S+KTD+++ G GSKL KAQ+LG+++++E+++ Sbjct: 646 TRDEAKAQAERFGAKVAASVSKKTDLVVAGPGAGSKLAKAQELGIEVISEDEWF 699 >gi|240142614|ref|YP_002967127.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1] gi|240012561|gb|ACS43786.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1] Length = 712 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 309/715 (43%), Positives = 448/715 (62%), Gaps = 18/715 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 +P+ LS E AR E ++L EI+ HD+ Y+ PI+ D+EYDAL+RR I A P LA Sbjct: 10 VPVAELSNEDARIEHAALASEIAEHDERYHGQDAPIVTDAEYDALRRRAAEIEAAHPALA 69 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + K+G + + K+ H+IP LSLE + ED+ +F RI RF + Sbjct: 70 AESEV---AKKVGAKPSSRFGKIVHAIPMLSLENAFVDEDVAEFAVRIRRFLDLPGGAPL 126 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG ++IRYE + V+AA RGDG +GE+V+A I IP L + P+++E Sbjct: 127 AFTAEPKIDGLSLSIRYENRRLVHAATRGDGAAGENVTANALTIQDIPDDLPRDAPDVVE 186 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 +RGEVY+SK+ F A+N A G+ +ANPRNAA+G LR+L+P +R L FF + G+ Sbjct: 187 IRGEVYLSKSAFAAINARQEAAGKPLFANPRNAAAGSLRQLDPKITASRPLKFFAYSWGE 246 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 TS A+ Q+ L + GF VN + +T ++ Y + ++R+ L YDIDG+VYK Sbjct: 247 TSAPIAEAQHAALARFDDWGFYVNPLTKLCSTVEEMLEVYRAIGAMRADLEYDIDGVVYK 306 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ +LQ++LG +R+PRW ++HKF +QA T L I+IQ+GRTG LTPVA+L P+ +GG Sbjct: 307 VDDLALQRRLGFVSRAPRWAVAHKFPAQQAETVLEAIEIQVGRTGSLTPVAKLRPLTVGG 366 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYIKGLD+ G+ +R GRD+RVGD V+V+RAG+VIP++VD+ ++R Sbjct: 367 VVVSNATLHNEDYIKGLDSDGQPIREGRDLRVGDHVIVQRAGDVIPQIVDVDPSKRSEGT 426 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ FP CP+C S VR+ NPK+G+ + RCTGGL C AQ +ER+KHF SR A +IEG Sbjct: 427 APYEFPKLCPVCGSHAVREANPKSGREDSVRRCTGGLICQAQAVERIKHFASRGAMDIEG 486 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG ++++ F + + +R P+DIFTL+RRQ + G G SV NL+ +I+ R Sbjct: 487 LGDERIEDFHRDD----LLRTPSDIFTLRRRQDAGEIDLTAREGMGPTSVANLFAAIDAR 542 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF--AQEINNIIAHNNDDWLSLIRVPL 603 R + LER I LGIRHVG A+ LAK Y S A ++ + + D LI Sbjct: 543 RKVPLERLIHGLGIRHVGETNAKLLAKAYRSLPAVREAAQVPDALKRMVD----LING-- 596 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G ++A A+VEF+ P N V+ LL EV + K S + K +VFTG+L ++ R Sbjct: 597 IGPVVAAAVVEFFLEPHNSEEVDRLLAEVGTTAPAAAKE--SPVTGKTIVFTGSLVRMSR 654 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ LGA + +S+KTD+++ G GSKL KA+Q GV++++E + L+ Sbjct: 655 DEAEAMAEGLGARTAGTVSKKTDLVVAGPGAGSKLAKAEQFGVRVIDENGWFDLV 709 >gi|166216283|sp|Q07PR9|DNLJ_RHOP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 715 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 313/727 (43%), Positives = 460/727 (63%), Gaps = 26/727 (3%) Query: 3 KRQLIP-IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + +P + L+ +A+ EL L EI HD YYQ P + D++YDAL+RR + I H Sbjct: 4 KSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEIEHK 63 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L P+ K+G KV H++P LSL ++ +++ +F+ R+ RF Sbjct: 64 FPELVSGASPS---QKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLQRVRRFLNLG 120 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 D+ EPKIDG +++RYE+G+ V AA RGDG GEDV+A +R + IP L N Sbjct: 121 DEIPAIVA-EPKIDGLSLSLRYEQGELVRAATRGDGSVGEDVTANVRTLKDIPHTLKGNR 179 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239 IP E+RGEVY+ K+DFLALN + G P+ANPRN+A+G LR+ + +R L FF Sbjct: 180 IPAACELRGEVYMLKSDFLALNKKQEEAGEAPFANPRNSAAGSLRQKDVAITASRPLKFF 239 Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + G+ S E + Q++ML + GF VN + ++ + +Y + R+ LPYD Sbjct: 240 AYAWGEFSGETPERTQHDMLGWLDHAGFVVNPEITLCHSVDDALVFYRRIGEERAALPYD 299 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD Q +LG R+PRW I+HKFA +QA+T L I+IQ+GRTG LTPVARL Sbjct: 300 IDGVVYKVDRLDWQARLGFAGRAPRWAIAHKFAAEQATTILEKIEIQVGRTGALTPVARL 359 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV +GG ++ NATLHNEDYIKG+ G+ +R GRDIRVGD V+++RAG+VIP+VVD+++ Sbjct: 360 APVTVGGVVVQNATLHNEDYIKGVGNDGQPLREGRDIRVGDTVIIQRAGDVIPQVVDVVL 419 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ++R DA P+ FP CP+C S VR+ G++V RCTG L C AQ +ERLKHFVSR Sbjct: 420 DKRPADAVPYEFPQACPVCGSHAVRE----DGEVV--RRCTGALICPAQAVERLKHFVSR 473 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 AF+I+GLG++Q++ F + ++ P DIFTL+ R +T K+E + G+G+ SV NL Sbjct: 474 LAFDIDGLGEKQIELFHERG----WVKEPVDIFTLKTR--NATLKLEELEGYGETSVRNL 527 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---- 594 + +I+ RR I L R IF+LGIRHVG A+ LA++Y + F + A ++ Sbjct: 528 FAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTIDAFLGAMRAAAAGQTEEGNTS 587 Query: 595 --WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 + L + +GDI+A+A+VEF+ RN+ A++ALL E+ + + S + K + Sbjct: 588 EAYQDLDNIGGIGDIVAEAVVEFFAEERNVEALDALLGELDEVLPAAQVKRDSAVAGKTV 647 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTG+L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA++LGV +++E+ Sbjct: 648 VFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDFVVAGEDAGSKLTKARELGVSVLSED 707 Query: 713 QFLFLLQ 719 ++L L+Q Sbjct: 708 EWLALIQ 714 >gi|115524134|ref|YP_781045.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53] gi|115518081|gb|ABJ06065.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53] Length = 730 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 313/727 (43%), Positives = 460/727 (63%), Gaps = 26/727 (3%) Query: 3 KRQLIP-IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + +P + L+ +A+ EL L EI HD YYQ P + D++YDAL+RR + I H Sbjct: 19 KSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEIEHK 78 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L P+ K+G KV H++P LSL ++ +++ +F+ R+ RF Sbjct: 79 FPELVSGASPS---QKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLQRVRRFLNLG 135 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 D+ EPKIDG +++RYE+G+ V AA RGDG GEDV+A +R + IP L N Sbjct: 136 DEIPAIVA-EPKIDGLSLSLRYEQGELVRAATRGDGSVGEDVTANVRTLKDIPHTLKGNR 194 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239 IP E+RGEVY+ K+DFLALN + G P+ANPRN+A+G LR+ + +R L FF Sbjct: 195 IPAACELRGEVYMLKSDFLALNKKQEEAGEAPFANPRNSAAGSLRQKDVAITASRPLKFF 254 Query: 240 VHGLGKTS-EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + G+ S E + Q++ML + GF VN + ++ + +Y + R+ LPYD Sbjct: 255 AYAWGEFSGETPERTQHDMLGWLDHAGFVVNPEITLCHSVDDALVFYRRIGEERAALPYD 314 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD Q +LG R+PRW I+HKFA +QA+T L I+IQ+GRTG LTPVARL Sbjct: 315 IDGVVYKVDRLDWQARLGFAGRAPRWAIAHKFAAEQATTILEKIEIQVGRTGALTPVARL 374 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV +GG ++ NATLHNEDYIKG+ G+ +R GRDIRVGD V+++RAG+VIP+VVD+++ Sbjct: 375 APVTVGGVVVQNATLHNEDYIKGVGNDGQPLREGRDIRVGDTVIIQRAGDVIPQVVDVVL 434 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ++R DA P+ FP CP+C S VR+ G++V RCTG L C AQ +ERLKHFVSR Sbjct: 435 DKRPADAVPYEFPQACPVCGSHAVRE----DGEVV--RRCTGALICPAQAVERLKHFVSR 488 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 AF+I+GLG++Q++ F + ++ P DIFTL+ R +T K+E + G+G+ SV NL Sbjct: 489 LAFDIDGLGEKQIELFHERG----WVKEPVDIFTLKTR--NATLKLEELEGYGETSVRNL 542 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---- 594 + +I+ RR I L R IF+LGIRHVG A+ LA++Y + F + A ++ Sbjct: 543 FAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTIDAFLGAMRAAAAGQTEEGNTS 602 Query: 595 --WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 + L + +GDI+A+A+VEF+ RN+ A++ALL E+ + + S + K + Sbjct: 603 EAYQDLDNIGGIGDIVAEAVVEFFAEERNVEALDALLGELDEVLPAAQVKRDSAVAGKTV 662 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTG+L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA++LGV +++E+ Sbjct: 663 VFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDFVVAGEDAGSKLTKARELGVSVLSED 722 Query: 713 QFLFLLQ 719 ++L L+Q Sbjct: 723 EWLALIQ 729 >gi|158421773|ref|YP_001523065.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571] gi|190359227|sp|A8IGY0|DNLJ_AZOC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158328662|dbj|BAF86147.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571] Length = 739 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 319/731 (43%), Positives = 468/731 (64%), Gaps = 34/731 (4%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS +A E ++L QEI+ HD YYQ P+I D++YD L+RR + I FP L + Sbjct: 18 LSATEASDEHAALSQEIASHDARYYQEDAPVISDADYDRLRRRYEDIEARFPALKNDDSL 77 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + K+G + KV H +P LSL+ ++ E++ +F+ R+ RF + + FT E Sbjct: 78 S---RKVGAAPSAKFAKVVHQVPMLSLQNAFSDEEVEEFVARVRRFLNLAESAELAFTAE 134 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PKIDG ++RYE G V AA RGDG GEDV+A +R I IP R+ +P+II++RGE Sbjct: 135 PKIDGLSCSLRYEGGVLVRAATRGDGTQGEDVTANVRTIAEIPHRLTGAGVPDIIDIRGE 194 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSE 248 VY+ K DFLALN G+ +ANPRNAA+G LR+L+P +ITR L FF + G+ +E Sbjct: 195 VYMGKADFLALNARQEEAGKPVFANPRNAAAGSLRQLDP-EITRSRPLRFFAYAWGQ-AE 252 Query: 249 IFAKG--QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G Q+E++ R G P N + G++++Y ++ + R++L YDIDG+VYKV Sbjct: 253 PGPPGASQHEVVDAFRRFGLPTNPLTIRVTDAAGLLAHYRKIGAERASLGYDIDGVVYKV 312 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D +LQ++LG +RSPRW I+HKFA +QA+T + I+IQ+GRTG LTPVA+L PV +GG Sbjct: 313 DSLALQERLGFVSRSPRWAIAHKFAAEQATTVIEAIEIQVGRTGALTPVAKLTPVTVGGV 372 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNEDYI+ + +G+ +R G DIRVGD V+V+RAG+VIP+VV +++++R A Sbjct: 373 VVSNATLHNEDYIRAIGGNGEEIREGIDIRVGDTVVVQRAGDVIPQVVSVVLDKRPAGAT 432 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + FP CP+C S+ VR+++PKTGK A RCTGGL C AQ +ERL+HFVSR+AF+IEGL Sbjct: 433 AYQFPHHCPVCNSQAVREVDPKTGKQDAVRRCTGGLICPAQAVERLRHFVSRNAFDIEGL 492 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++Q F++ + I PADIF LQ R + S +K+EN G+G S NL+ +I RR Sbjct: 493 GEKQAHAFYEWK----LIAEPADIFRLQARNEQSLSKLENREGWGRTSAQNLFAAIEARR 548 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-----AQEINNII------------- 588 I+L+RFIF+LGIRHVG A+ LA++Y S + E+ + Sbjct: 549 TIALDRFIFALGIRHVGETNAKRLARHYGSVEALRDAAIGAEMPTEMEEASEETPPTRRR 608 Query: 589 -AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 N+ W + + +G ++A+A+VEF++ P N VE LLKEV+P + +S + Sbjct: 609 KPQGNEVWQEMTDIDGIGAVVAEAVVEFFREPHNRQVVEELLKEVTPQPLEAVAS-TSPV 667 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 K +VFTG+L+++ R +A+ +LGA V+ +S KTD+++ G GSKLEKA+ LGVK Sbjct: 668 SGKTVVFTGSLERMTRDEAKAMAERLGAKVAGSVSGKTDLLVAGPGAGSKLEKARSLGVK 727 Query: 708 IMNEEQFLFLL 718 + E+++ L+ Sbjct: 728 TITEDEWFDLV 738 >gi|92116846|ref|YP_576575.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14] gi|123083742|sp|Q1QNT2|DNLJ_NITHX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91799740|gb|ABE62115.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14] Length = 714 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 314/720 (43%), Positives = 459/720 (63%), Gaps = 24/720 (3%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+++L+ QA+ E L EI H++ YYQ P + D+ YDAL++R +AI FPDL Sbjct: 10 PVDSLTRAQAKIEHKRLALEIETHNERYYQKDAPTVSDAAYDALRQRLEAIEARFPDLIT 69 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + N P +G KV H++P LSL ++ E++ +F+ RI RF + D+ Sbjct: 70 A---NSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDEEVAEFVERIQRFLKLGPDDIPA 126 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186 EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L NIP E Sbjct: 127 IVAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPHNLRGRNIPTACE 186 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 +RGEVY+ K DFLALN + G +ANPRN+A+G LR+ + +R L FF + G+ Sbjct: 187 LRGEVYMLKTDFLALNKKQEDAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAYAWGE 246 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 ++ A Q++ML+ ++ +GF VN + N+ ++ +Y ++ R++L YDIDG+VYK Sbjct: 247 MTDRPADTQHDMLEWLKDVGFKVNPLIELCNSVEKVLKFYRKIGEQRASLGYDIDGVVYK 306 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG +TPVARLEPV IGG Sbjct: 307 VDRLDWQERLGFVSRSPRWAIAHKFAAEQATTILKGIDIQVGRTGAMTPVARLEPVTIGG 366 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHNEDYIKG+ G+ +R G D+RVGD V+V+RAG+VIP+VV +++++R A Sbjct: 367 VVVQNATLHNEDYIKGIGNDGQPIRDGVDLRVGDTVVVQRAGDVIPQVVSVVIDKRPNSA 426 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 QP++FP CPIC S VR+ A RCTG L C AQ +ERLKHFVSR AF+I+G Sbjct: 427 QPYAFPHTCPICGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRLAFDIDG 480 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++Q+ F + I+ PADIFTL R++ K+E + GFG+VSV NL+ +I+ R Sbjct: 481 LGEKQIQEFHERG----WIKEPADIFTL--RERNPKIKLEELEGFGEVSVRNLFAAIDAR 534 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------WLSLI 599 R I L R IF+LGIRHVG A+ LA++Y F ++ A DD + L Sbjct: 535 RTIELNRLIFALGIRHVGEGNAKLLARHYGGIDAFRAAMSEAAAAQTDDGNASEAYADLN 594 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + +GDI+A A+VEF+ RN+ A+ LL+E+ +N S + K +VFTG+L+ Sbjct: 595 NISGIGDIVADAVVEFFAETRNVKALNDLLEEIEVLPVAQARN-DSAVAGKTVVFTGSLE 653 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 K R +A+ ++GA VS +S+KTD+++ G GSKL+ A++ GV++++E+++L L++ Sbjct: 654 KFTRDEAKASAERMGAKVSGSVSKKTDLVVAGPGAGSKLKDAEKHGVQVISEDEWLKLIE 713 >gi|182677699|ref|YP_001831845.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC 9039] gi|254781257|sp|B2IGH4|DNLJ_BEII9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|182633582|gb|ACB94356.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC 9039] Length = 699 Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust. Identities = 300/714 (42%), Positives = 453/714 (63%), Gaps = 21/714 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PIE+LS QA++E L ++I+ HD YYQ P + D+EYDAL+RR +A+ AFP+L Sbjct: 6 PIESLSPAQAKREHRRLGEQITEHDRLYYQEDAPRVSDAEYDALRRRYEALETAFPELVS 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 +E KIG K+ H +P LSL I++ E++ +F+ R+ RF D + Sbjct: 66 AESLT---KKIGAAPAEKFAKIIHKVPMLSLANIFSDEEVGEFVARVRRFLGLGADAPLA 122 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + EPKIDG ++RYE G V AA RGDG+ GEDV+A +R I IP L + PEI+EV Sbjct: 123 ISAEPKIDGLSCSLRYEGGYLVQAATRGDGYEGEDVTANVRTIQEIPHQLQGHAPEILEV 182 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGEVY++ DF ALN+ A G+ +ANPRN+A+G LR+L+P R L+FF + G+ Sbjct: 183 RGEVYMTHADFAALNERQEAAGKTIFANPRNSAAGSLRQLDPKVTAGRPLHFFAYAWGEA 242 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A Q M+ + G PVN ++ ++ ++++Y+++++ R+ L YDIDG+VYKV Sbjct: 243 SEEPADTQMGMVTAFKAFGLPVNPLMQLCHSAEDLIAHYHDIEARRALLDYDIDGVVYKV 302 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQK+LG +R+PRW +HKF ++A T L DI+IQ+GRTG LTPVARLEP+ +GG Sbjct: 303 NSIALQKRLGFVSRAPRWATAHKFPAEKAVTLLRDIEIQVGRTGALTPVARLEPITVGGV 362 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNED I +DIR+GD V+++RAG+VIP+++ I+++R DAQ Sbjct: 363 VVSNATLHNEDEI-----------ARKDIRIGDMVMIQRAGDVIPQILGPILDKRPQDAQ 411 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP+C S +R+++PKTG RCTGGL C+AQ +ERLKHF SR+AF+IEGL Sbjct: 412 PYEFPQVCPVCGSAAIREIDPKTGTADVVRRCTGGLVCAAQVVERLKHFASRNAFDIEGL 471 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ F+ I P DIFTLQ R S K+++ G+G+ SV NL+ +I RR Sbjct: 472 GDKQIEQFYHDG----LIHTPVDIFTLQERDARSLKKLKDREGYGETSVRNLFQAIEARR 527 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I + RFI++LGIRHVG AR A+ + ++ + + + +++ L V G Sbjct: 528 HIPVNRFIYALGIRHVGETNARRAARAFGTFDAL-RAVASRAEEGSEERSELTNVEGFGP 586 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+AI +F+ N ++ LL++V+P S + K +VFTG L+ + R +A Sbjct: 587 VVAEAIFDFFHEQHNQDVLDGLLEQVTPEPMEAVAK-ESPVAGKTVVFTGALEHMTREEA 645 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +LGA V+ +S+KTD+++ G GSKL KA +L ++ ++EE +L L+ + Sbjct: 646 KAQAERLGAKVAGSVSKKTDLVVAGPGAGSKLAKAAELNIETISEEDWLKLVGE 699 >gi|75675255|ref|YP_317676.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255] gi|123773282|sp|Q3STR7|DNLJ_NITWN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|74420125|gb|ABA04324.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255] Length = 716 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 310/726 (42%), Positives = 461/726 (63%), Gaps = 22/726 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + P+++L+ QAR E L EI H++ YYQ P + D+ YDAL+RR +AI Sbjct: 4 KSKTPPPVDSLTRSQARVEHKRLALEIETHNERYYQQDAPTVSDATYDALQRRLEAIEAR 63 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FPDL + + P +G KV H++P LSL ++ ++ +F+ RI RF + Sbjct: 64 FPDLVTA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDAEVAEFVERIRRFLKLG 120 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LN 180 D+ EPKIDG +++RYE G V AA RGDG +GEDV+A +R I +P L+ N Sbjct: 121 ADDMPAIVAEPKIDGLSLSLRYENGDLVRAATRGDGFTGEDVTANVRTIADVPHKLNGHN 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IP E+RGEVY+ K DFLALN + G +ANPRN+A+G LR+ + + +R L FF Sbjct: 181 IPTACELRGEVYMLKEDFLALNKKQQEAGDTVFANPRNSAAGSLRQKDVSITASRPLKFF 240 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ ++ A+ Q +ML+ +R +GF VN ++ ++ ++++Y + R+TL YDI Sbjct: 241 AYAWGEMTDRPAETQNDMLEWLRDVGFIVNPLIQLCHSVDEVLAFYRRIGEQRATLGYDI 300 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +RSPRW I+HKFA +QA T L IDIQ+GRTG +TPVARLE Sbjct: 301 DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQAMTILRGIDIQVGRTGAMTPVARLE 360 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ NATLHNEDYI+GL G+ +R G D+R+GD V+V+RAG+VIP+VV +I+ Sbjct: 361 PVTVGGVVVQNATLHNEDYIRGLGNDGQPIRDGIDLRIGDTVVVQRAGDVIPQVVSVIIE 420 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R +A+ + FP CPIC S VR+ A RCTG L C AQ +ERLKHFVSR Sbjct: 421 KRPANAKRYEFPDRCPICGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRL 474 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG++Q+ F+ D + P DIFTLQ R + K+ + G+GDVSV NL+ Sbjct: 475 AFDIDGLGEKQIQEFY---DDGLVMH-PVDIFTLQERDARAENKLRDRDGYGDVSVRNLF 530 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI------NNIIAHNND 593 +I+ RR I L R IF+LGIRHVG A+ LA++Y S ++F + ++++ Sbjct: 531 AAIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGSIESFRSAMTEAAAAQTEAGNDSE 590 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 + L + +GDI+A A+VEF+ PRN+ A+ LL+E+ + + S + K +V Sbjct: 591 AYADLTNIGGIGDIVADAVVEFFAEPRNVKALNDLLEEIE-VLPVAQARSDSAVAGKTVV 649 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTG+L+K R +A+ ++GA S+ +S+KTD+++ G GSKL+ A++ GVK+++E++ Sbjct: 650 FTGSLEKFTRDEAKASAERVGAKTSSSVSKKTDLVVAGPGAGSKLKDAEKFGVKVISEDE 709 Query: 714 FLFLLQ 719 +L L++ Sbjct: 710 WLKLIE 715 >gi|90418183|ref|ZP_01226095.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1] gi|90337855|gb|EAS51506.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1] Length = 703 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 303/712 (42%), Positives = 447/712 (62%), Gaps = 26/712 (3%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E L ++A EL L EI+ HD YY+ P + D+EYD L+RR AI FP+L R Sbjct: 6 VETLDRDEAAAELERLAGEIAAHDRAYYREDAPTVTDAEYDTLRRRNAAIEARFPELIRE 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ ++G E++ K+ H++P LSL+ ++ ED+ F R+ RF + DD + Sbjct: 66 DSPSA---RVGTEVSEKFGKIRHAVPMLSLDNAFSDEDVADFAKRVRRFLKLDDDAPLAI 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYEKG+ V AA RGDG +GEDV+ R I IP L PE+ EVR Sbjct: 123 TAEPKIDGLSLSLRYEKGELVSAATRGDGATGEDVTRNARTIDDIPNRLKGKAPEVFEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKT 246 GEVY+S F LN G+ YANPRNAA+G LR+L+ ITR L FF + G+ Sbjct: 183 GEVYMSHAAFTDLNARQAEEGKPVYANPRNAAAGSLRQLD-AGITRARKLQFFAYAWGEA 241 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE+ + Q E++ + GFPVN +++ T G++++Y+ ++ R+ L YDIDG+VYKV Sbjct: 242 SEVPGETQTEVVAAIAGFGFPVNERMKRFETIEGLIAHYHAIEENRAGLGYDIDGVVYKV 301 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQK+LG +RSPRW I+HKF +QA+T L I+IQ+GRTG LTPVA+L+PVN+GG Sbjct: 302 DDLALQKRLGFVSRSPRWAIAHKFPAEQATTVLRAIEIQVGRTGALTPVAKLDPVNVGGV 361 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NATLHN + I+ L D+RVGD V ++RAG+VIP+V+ I+ ++R DA+ Sbjct: 362 MVANATLHNAEEIERL-----------DVRVGDTVQIQRAGDVIPQVLGIVADKRPEDAE 410 Query: 427 PFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 PF+FPS CP ++ VVR+ +G RCTG AC Q+ E LK FVSR AF+IEG Sbjct: 411 PFAFPSVCPCELKTDVVRE-ETASGAQSVVRRCTGEFACPFQRREHLKLFVSRKAFDIEG 469 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q+D F+ +DP F +R PADIF + R Q K+++ GFG+VS NL+ +I R Sbjct: 470 LGDKQIDLFY--DDPDFQVRTPADIFRMHGRNQEGLKKLKDKEGFGEVSAKNLFAAIEAR 527 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I L+R IFSLGIRHVG A++LA+ Y +++ F + + A + + + + +G Sbjct: 528 RTIPLDRLIFSLGIRHVGETTAKTLARAYGTFEAFHEAALKVAAGDEEASGEMDALDDIG 587 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 + A F+ N+ VE L+ E V P+ + +S + + +VFTG+L+K+ R Sbjct: 588 GAVITATARFFSEDHNLKLVEDLVAELDVQPA---EQPAATSPVSGQTIVFTGSLEKMTR 644 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A+ LGA V+ +S+KTD+++ G GSKL+KA +LGV++++E+ + Sbjct: 645 DEAKAMAEGLGAKVAGSVSKKTDLVVAGPGAGSKLKKAAELGVEVIDEDAWF 696 >gi|83858905|ref|ZP_00952427.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633] gi|83853728|gb|EAP91580.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633] Length = 695 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 303/716 (42%), Positives = 456/716 (63%), Gaps = 30/716 (4%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 L + AL+ ++A EL L +EIS HD YY+ P I D+ YDAL+ R AI FP+L Sbjct: 5 LKDVNALTSDEAASELERLAREISRHDKAYYEKDAPKISDAAYDALRARNSAIEARFPEL 64 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ +++G + + +V H++P LSL + +D+R F RI RF KD+ Sbjct: 65 KRKDSPS---DRVGAKPSEQFGEVVHAVPMLSLGNAFEDQDVRDFADRIRRFLNLKDEK- 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + FT EPKIDG +RYE+G+ V A RGDG +GE+V+A ++ I IP L ++P+++ Sbjct: 121 LVFTAEPKIDGLSANLRYEQGELVIGATRGDGRTGENVTANLKTIADIPHRLEGDVPDVL 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEVY+S DF LN G+ Y NPRNAA+G LR+++P R L FF + G Sbjct: 181 EVRGEVYMSHADFAQLNAMQEERGKPAYKNPRNAAAGSLRQIDPNVTAERPLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + SE A+ QY+ ++++ LGF +N+ + + + ++++Y +++ R+ L YDIDG+VY Sbjct: 241 ELSEPLAETQYDAVKRLGQLGFVINDDMVRVESVEDVLAHYRALEAKRADLGYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD Q++LG AR+PRW I+HKF+ ++A TRL I+IQ+GRTG LTPVA+LEPV +G Sbjct: 301 KVDRLDWQERLGFVARAPRWAIAHKFSPEKAVTRLNAIEIQVGRTGALTPVAKLEPVTVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHN+D I+ +D+RVGD V+++RAG+VIP+VV++++++R Sbjct: 361 GVVVSNATLHNQDEIE-----------RKDVRVGDTVIIQRAGDVIPQVVEVVLDKRPEA 409 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+PF+FP+ CP+C S VR+ G++V RCTGGL C AQ +ERLKHFVSR AF+IE Sbjct: 410 AEPFAFPTLCPVCGSHAVRE----EGEVV--RRCTGGLICDAQAVERLKHFVSRKAFDIE 463 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK--IENILGFGDVSVTNLYDSI 542 GLG +Q++ FF ++ PADIFTL+ R + I+ G+G+ S NL+ SI Sbjct: 464 GLGAKQIEAFFHE----GLVKQPADIFTLRARNEAGEINPPIQTREGWGERSAANLFGSI 519 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 ++RRNI L RF+F+LGIRHVG E AR +A+ + S+Q +E + + + + + Sbjct: 520 DQRRNIGLARFLFALGIRHVGEETARLIARSFTSWQ-VVRETAEAANEPGEAFAAFMDID 578 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G+ +A+ EF+ N A+ ALL V+ + S + K +VFTG+L++ Sbjct: 579 GIGETAVKALAEFFAESHNQDALNALLAHVTVEDA-EQVAAESPVAGKTVVFTGSLERFT 637 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA VS +S KTDI++ G GSKL+KAQ+LGV+ M E+++L L+ Sbjct: 638 RDEAKAKAQSLGAKVSGSVSGKTDILVAGPGAGSKLKKAQELGVQTMTEDEWLALI 693 >gi|316933200|ref|YP_004108182.1| NAD-dependent DNA ligase [Rhodopseudomonas palustris DX-1] gi|315600914|gb|ADU43449.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris DX-1] Length = 715 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 308/728 (42%), Positives = 457/728 (62%), Gaps = 27/728 (3%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 +KK I L+ +A+ EL L I HD YYQ P I D++YDAL+RR +AI Sbjct: 3 VKKNPAPDIATLTKAKAKVELMRLRLVIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQ 62 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP+L + + P +G KV H++P LSL + +++ +F R+ RF + Sbjct: 63 KFPELVSA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKL 119 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179 D +I EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L Sbjct: 120 DDVPAI--VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGK 177 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNF 238 +IP E+RGEVY+ K DFLALN G +ANPRN+A+G LR+ + +R L F Sbjct: 178 HIPAACELRGEVYMLKQDFLALNKRQEEAGETVFANPRNSAAGSLRQKDVAVTASRPLKF 237 Query: 239 FVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 F + G+ S+ + Q++MLQ + +GF VN +R +T I+++Y E+ R++LP Sbjct: 238 FAYAWGEMSDYPMEEPTQHKMLQWLDHVGFVVNPLIRPCHTVEEILAFYREIGEQRASLP 297 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 YDIDG+VYKVD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG +TPVA Sbjct: 298 YDIDGVVYKVDRLDYQERLGFISRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVA 357 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 RL+PV +GG ++ NATLHNEDYIKG+ G +R G DIR GD V+V+RAG+VIP++V + Sbjct: 358 RLQPVTVGGVVVQNATLHNEDYIKGIGNDGSPLRDGVDIREGDTVVVQRAGDVIPQIVSV 417 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 ++++R A+P+ FP CP+C S VR+ A RCTG L C AQ +ERLKHFV Sbjct: 418 VLDKRPAGAEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFV 471 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR AF+I+GLG++Q++ F + ++ PADIFTL+ R + K+E + G+G+ SV Sbjct: 472 SRLAFDIDGLGEKQIELFHERG----WVQEPADIFTLKAR--NAELKLEQLEGYGETSVR 525 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------AQEINNIIAH 590 NL+ +I+ RR I L R +F+LGIRHVG A+ LA++Y + F A + + Sbjct: 526 NLFAAIDARRTIELHRLVFALGIRHVGEGNAKLLARHYGTLDAFLTAMRAAADAQTEEGN 585 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 ++ + L + +GD++A+A+VEF+ RN+ A++ALL E++ + + + + K Sbjct: 586 TSEAYQDLDNIAGIGDVVAEAVVEFFAEERNVKALDALLAELTEVLPAEQARRDTAVAGK 645 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +VFTG+L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ Sbjct: 646 TVVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLT 705 Query: 711 EEQFLFLL 718 E+++L L+ Sbjct: 706 EDEWLALI 713 >gi|217979603|ref|YP_002363750.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2] gi|254781370|sp|B8ETN6|DNLJ_METSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|217504979|gb|ACK52388.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2] Length = 700 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 304/715 (42%), Positives = 453/715 (63%), Gaps = 26/715 (3%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PI+A+++ QAR+E S L EI+ HD YY+ P + D+EYD L+RR + AFP+LA Sbjct: 5 PIDAMTLAQARREHSRLGAEIAAHDARYYREDAPTVSDAEYDRLRRRYGELESAFPELA- 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ K+G + K+ H IP LSL +++ ++ F+ R+ RF + S+ Sbjct: 64 --SPDSLTKKVGAAPSEKFAKIRHRIPMLSLGNVFSEAEVEDFVARVRRFLGLPTEASLA 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 T EPKIDG ++R+E G+FV AA RGDG GEDV+A +R I IP L PE++EV Sbjct: 122 ITAEPKIDGLSCSLRFENGEFVQAATRGDGFEGEDVTANVRTIAEIPARLKGEPPEVLEV 181 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245 RGEVY++ DF A+N G+ +ANPRNAA+G LR+L+P +IT R L+FF + G+ Sbjct: 182 RGEVYMTHADFAAMNVRQQEAGKPLFANPRNAAAGSLRQLDP-NITAGRPLHFFAYAWGE 240 Query: 246 TSEIFAKG-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 G Q M+ + G PVN + ++ +++ Y ++ R+ L YDIDG+VY Sbjct: 241 ILPAPPAGTQMGMVAAFKSYGLPVNPLMVLCHSAEELIAKYRSIEEKRAALGYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ++LG +RSPRW ++HKF +QA+T L DI+IQ+GRTG LTPVARL+PV +G Sbjct: 301 KVDSLVLQERLGFVSRSPRWAVAHKFPAEQATTVLRDIEIQVGRTGALTPVARLDPVTVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + NATLHNED I +D+R+GD V ++RAG+VIP+V+ +++N+R + Sbjct: 361 GVTVANATLHNEDEI-----------ARKDVRIGDTVRIQRAGDVIPQVLGVVLNKRPAE 409 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+P+ FP CPIC S +R+++ KTG RCTGGL C AQ +ERLKHF SR+A +IE Sbjct: 410 AKPYVFPDHCPICGSAAIREIDEKTGVADVVRRCTGGLICPAQAIERLKHFASRNALDIE 469 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +Q++ F+ I PADIFTL+ R + + K+++ G+G+ S NL+ +I + Sbjct: 470 GLGDKQIEQFYHDG----LITKPADIFTLEARDKAALKKLKDREGYGETSTRNLFRAIEQ 525 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RR +L RFI++LGIRHVG AR LA+++ S+ +E A ++ + + V Sbjct: 526 RRAPALNRFIYALGIRHVGETNARRLARHFGSFSAL-RETGRAAAPGSEARAEINNIEGV 584 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663 G+++A+A+ +F+ P N A++ALL V+P E+ VS + + K +VFTG L+++ R Sbjct: 585 GEVVAEAVADFFAEPHNEEALDALLAHVNPQP--MEEIVSDTPVAGKTVVFTGALERMTR 642 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ +LGA V+A +S+KTD++I G GSKL KA +LGV+ ++EE +L L+ Sbjct: 643 DEAKAMAERLGAKVAASVSKKTDLVIAGPGAGSKLAKAAELGVETISEEDWLKLV 697 >gi|260433791|ref|ZP_05787762.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157] gi|260417619|gb|EEX10878.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157] Length = 708 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 300/714 (42%), Positives = 448/714 (62%), Gaps = 15/714 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP++ L+ +QA++EL+ L + ++ Y+ P I D+EYDALKRR I FP L Sbjct: 5 IPVQELTEDQAKEELARLASALLRANELYHGQDAPEISDAEYDALKRRNLEIEARFPHLK 64 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R P+ P ++G + KV HS+ +SL ++ D+R F+ I ++ +D+ Sbjct: 65 R---PDSPTEQVGARPSEGFDKVRHSVRMMSLGNAFDETDVRDFVRSIQKYLGLSEDDVP 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG +++RYE G V AA RGDG GE+V+A + IP+ L+ P+I+E Sbjct: 122 EFTAEPKIDGLSLSLRYENGTLVQAATRGDGEVGENVTANALTVGDIPKALT-GAPKILE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLG 244 VRGEVY+S DF LN + G K +ANPRNAA+G LR+L+P ++TR L FF + G Sbjct: 181 VRGEVYMSHEDFARLNQKQSESGGKLFANPRNAAAGSLRQLDP-EVTRSRPLRFFAYAWG 239 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + SE + Q E L ++ LGF N R + ++++Y ++ R+TL YDIDG+VY Sbjct: 240 ELSEPLGQTQIEGLARLASLGFATNGLTRLCRSVEDMLAHYRTIEEQRATLGYDIDGVVY 299 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +G Sbjct: 300 KVNDLALQARLGYRSTTPRWAIAHKFPAETAWTRLEAIDIQVGRTGALSPVARLHPVTVG 359 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYI G DA G V+R G+DIRVGD V V RAG+VIPK+ D+ +++R Sbjct: 360 GVVVSNATLHNEDYIAGRDAKGNVIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSKRPDW 419 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A PF FP+ CP C S +R+ + RCTGG+ C AQ +E+LKHFVSR AF+IE Sbjct: 420 AVPFEFPTKCPECGSDAIREEGD------SVRRCTGGIICPAQAVEKLKHFVSRKAFDIE 473 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +Q++ F+ +DP ++ P DIFTLQ+R + + K+ N G+G SV L+ +I++ Sbjct: 474 GLGTKQIEMFY--DDPDLPVKTPVDIFTLQQRDEANLNKLANRKGWGRQSVAKLWAAIDE 531 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +R + L R +F+LGIRHVG + LA +Y S++ F + + +W L+ + V Sbjct: 532 KRTVPLARLLFALGIRHVGEAASNLLANHYGSWEAFEKAMTAAADFEGPEWQELLSIDGV 591 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G+++A+ +V + ++ L+ +++ S + K +VFTGTL+K+ R Sbjct: 592 GEVMARTLVSTFAQEAERKTIDDLVAQLNVLDAERPDTSDSPVAGKTIVFTGTLEKMTRA 651 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ LGA VS +S+KTDI++ G GSK +KA +LGVK+++E+++L L+ Sbjct: 652 EAKARAEALGAKVSGSVSKKTDIVVAGPGAGSKAKKAAELGVKVLDEDEWLHLI 705 >gi|27381702|ref|NP_773231.1| DNA ligase [Bradyrhizobium japonicum USDA 110] gi|81735382|sp|Q89FV8|DNLJ_BRAJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|27354871|dbj|BAC51856.1| DNA ligase [Bradyrhizobium japonicum USDA 110] Length = 716 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 306/721 (42%), Positives = 454/721 (62%), Gaps = 13/721 (1%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + L + L+ QA+ EL L E+ HD YYQ P + D+EYDAL++R +AI Sbjct: 7 KSKPLRDVAELTKAQAKVELMRLALELEGHDKRYYQDDAPTVTDAEYDALRQRFNAIEKR 66 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+ +E P+ K+G + KV H++P LSL+ + ED+R F+ RI RF K Sbjct: 67 FPEFVSAESPS---QKVGAAPSGRFRKVRHAVPMLSLDNAFAEEDVRDFVGRIVRFL-KL 122 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 DD+ I F+ EPKIDG +++RYE G+ V AA RGDG GEDV+A IR + +P+ L N Sbjct: 123 DDDKIDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLEDVPQKLKGRN 182 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P+I EVRGEVY++K FLALN+ A G +ANPRN+A+G LR+ +PT +R L FF Sbjct: 183 VPDICEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPTITASRPLGFF 242 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ S + + Q M+ GF N R ++ +++++ ++ R+ L YDI Sbjct: 243 AYAWGEMSAMPEETQTGMIHWFERCGFKTNPLTRLCHSVEELIAFHQRIEEERAELDYDI 302 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +R+PRW I+HKF +QA T L DI+IQ+GRTG TPV +LE Sbjct: 303 DGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAEQAMTVLRDIEIQVGRTGSFTPVGKLE 362 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ N TLHNEDYIKG+ G+V+R GRDIR+GD V+++RAG+VIP+VVD++++ Sbjct: 363 PVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVLD 422 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R A+ F FP CP V G+ + RCTG AC Q++E LK FVSR Sbjct: 423 KRPKTAKEFHFPKTCPCPLHTDVTREETAAGEEGSRARCTGEFACPYQKIEHLKLFVSRR 482 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG++QL +FF D F ++ PADIFTL++R + K+E I G+G SV NL+ Sbjct: 483 AFDIDGLGEKQLQYFF---DEGF-VKEPADIFTLEKR--NAKLKLEEIEGYGATSVRNLF 536 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I RR I+LERF+++LG+RHVG A +LA+ Y S++ F + + + + Sbjct: 537 AAIESRRRIALERFVYALGMRHVGETTALALARGYGSWEAFHDACLKVAKGDEEAMADMD 596 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + +GD + ++I +++ N VE L KEV K+ +S + K +VFTG+L+ Sbjct: 597 ALDQIGDTVIKSIADYFGESHNRGIVERLTKEVEIVDAEKPKS-NSAVAGKTVVFTGSLE 655 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 K+ R +A+ +LGA VS +S+KTD+++ G GSKL +A + GVK++ E+++L L+ Sbjct: 656 KMTRDEAKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLKLIG 715 Query: 720 Q 720 + Sbjct: 716 E 716 >gi|154245706|ref|YP_001416664.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2] gi|254782313|sp|A7IG64|DNLJ_XANP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|154159791|gb|ABS67007.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2] Length = 720 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 305/720 (42%), Positives = 459/720 (63%), Gaps = 27/720 (3%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP++ LS +A E +L QEI+ HD YY+ P++ D+EYDAL+ R +AI FP L Sbjct: 19 IPVDDLSPAEAASEHKALAQEITGHDAAYYREDAPVVSDAEYDALRHRYEAIEERFPGL- 77 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R ED K+G + KV H +P LSL ++ E++ +F+ R+ RF D+ + Sbjct: 78 RGEDSLS--EKVGAAPSEKFGKVAHKVPMLSLANCFSDEEVVEFVARVKRFLNLGPDDEV 135 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 FT EPKIDG ++ YE G+ AA RGDG GEDV+ +R I IP R+ +P+ I Sbjct: 136 AFTCEPKIDGLSCSLHYENGRLTVAATRGDGSQGEDVTQNVRTIADIPERLAGKGVPQTI 195 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 +VRGEVY++K DF ALN A K +ANPRNAA+G LR+L+ + +R L FF + G Sbjct: 196 DVRGEVYMAKADFEALNARQAAAEEKVFANPRNAAAGSLRQLDSSITASRPLKFFAYAWG 255 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A+ Q+ +++ GF N + A G++++Y +++ R+ L YDIDG+VY Sbjct: 256 EASDLPAETQFGVVEAFARWGFTTNPLMVVAKDAAGLIAHYRSIEAQRALLGYDIDGVVY 315 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ LQ++LG +RSPRW I+HKF +QA+T L DI+IQ+GRTG LTPVA+L PV +G Sbjct: 316 KVNSLELQRRLGFVSRSPRWAIAHKFPAEQATTVLEDIEIQVGRTGALTPVAKLTPVTVG 375 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++++ATLHNED I +D+R+GD V+V+RAG+VIP+VV +I +R Sbjct: 376 GVVVSSATLHNEDEI-----------ARKDVRIGDTVVVQRAGDVIPQVVRVIEEKRPAG 424 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 ++P+ FP+ CP C S VR+++ K+GK+ A RCTGGL C AQ +ERL+HFVSR+AF+IE Sbjct: 425 SKPYEFPTHCPACGSHAVREVDTKSGKVDAVRRCTGGLICPAQMVERLRHFVSRNAFDIE 484 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q+ F++ I PADIFTL+ R S ++EN G+G S NL+ +I + Sbjct: 485 GLGEKQVRAFYEWG----LIASPADIFTLETRNARSLQRLENRDGWGKTSAANLFAAIAE 540 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSL 598 RR ++++RF+F+LGIRHVG A+ L ++Y + + + N+ W + Sbjct: 541 RRTVAVDRFVFALGIRHVGETNAKRLMRHYGTVEALEAGALAAVIPGEEHPKGNEAWQEM 600 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 I + +GD++A+A++EF+ PRN V ALLKEV+P + +S + K +VFTG+L Sbjct: 601 IGIDGIGDVVAEAVIEFFGEPRNREVVTALLKEVTPEP-MEQVAAASPVSGKTVVFTGSL 659 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +K+ R +A+ +LGA V+ +S KT++++ G GSKLEKAQ LGV+++ E+++ L+ Sbjct: 660 EKMTRDEAKAMAERLGAKVAGSVSAKTNLVVAGPGAGSKLEKAQALGVQVITEDEWFELV 719 >gi|166216284|sp|Q6N423|DNLJ_RHOPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 715 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 305/720 (42%), Positives = 452/720 (62%), Gaps = 27/720 (3%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I L+ +A+ EL L EI HD YYQ P I D++YDAL+RR +AI FP+L + Sbjct: 11 IATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPELVNA 70 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +G KV H++P LSL + +++ +F R+ RF + D +I Sbjct: 71 ---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLDDVPAI-- 125 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187 EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L +IP E+ Sbjct: 126 VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKHIPATCEL 185 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+ K DFLALN +ANPRN+A+G LR+ + T +R L FF + G+ Sbjct: 186 RGEVYMLKQDFLALNKRQEEANETVFANPRNSAAGSLRQKDVTVTASRPLKFFAYAWGEM 245 Query: 247 SE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 S+ + Q++MLQ + GF VN + ++ +++Y + R++LPYDIDG+VY Sbjct: 246 SDYPMEEPTQHKMLQWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPYDIDGVVY 305 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG +TPVARL+PV +G Sbjct: 306 KVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVARLQPVTVG 365 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ NATLHNEDYIKG+ G+ +R G DIR GD V+V+RAG+VIP++V +++ +R Sbjct: 366 GVVVQNATLHNEDYIKGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVVMEKRPAG 425 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+P+ FP CP+C S VR+ A RCTG L C AQ +ERLKHFVSR AF+I+ Sbjct: 426 AEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFVSRLAFDID 479 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++ F + ++ PADIFTL+ R + K+E + G+G+ SV NL+ +I+ Sbjct: 480 GLGEKQIELFHERG----WVQEPADIFTLKAR--NAELKLEQLEGYGETSVRNLFAAIDA 533 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYY------LSYQNFAQEINNIIAHNNDDWLSL 598 RR+I L R +F+LGIRHVG A+ LA++Y LS A + + ++ + L Sbjct: 534 RRSIELHRLVFALGIRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNTSEAYQDL 593 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + +GD++A+A+VEF+ RNI A++ALL E++ + + + + K +VFTG+L Sbjct: 594 DNIAGIGDVVAEAVVEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKTVVFTGSL 653 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ E+++L L+ Sbjct: 654 SKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTEDEWLALI 713 >gi|192292401|ref|YP_001993006.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1] gi|254781404|sp|B3QFL8|DNLJ_RHOPT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|192286150|gb|ACF02531.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1] Length = 715 Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust. Identities = 306/720 (42%), Positives = 450/720 (62%), Gaps = 27/720 (3%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I L+ +A+ EL L EI HD YYQ P I D++YDAL+RR +AI FP+L + Sbjct: 11 IATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPELVNA 70 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +G KV H++P LSL + +++ +F+ R+ RF + D +I Sbjct: 71 ---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFVERVQRFLRLDDVPAI-- 125 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187 EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L +IP E+ Sbjct: 126 VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKHIPAACEL 185 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGEVY+ K DFLALN G +ANPRN+A+G LR+ + +R L FF + G+ Sbjct: 186 RGEVYMLKQDFLALNKRQEEAGETVFANPRNSAAGSLRQKDVLVTASRPLKFFAYAWGEM 245 Query: 247 SE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 S + Q++MLQ + GF VN + ++ +++Y + R++LPYDIDG+VY Sbjct: 246 STYPMDEPTQHKMLQWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPYDIDGVVY 305 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG LTPVARL+PV +G Sbjct: 306 KVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLQPVTVG 365 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ NATLHNEDYI+G+ G+ +R G DIR GD V+V+RAG+VIP++V +++ +R Sbjct: 366 GVVVQNATLHNEDYIRGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVVMQKRPAG 425 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+P+ FP CP+C S VR+ A RCTG L C AQ +ERLKHFVSR AF+I+ Sbjct: 426 AEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFVSRLAFDID 479 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++ F + ++ PADIFTL+ R K+E + G+G+ SV NL+ +I+ Sbjct: 480 GLGEKQIELFHERG----WVQEPADIFTLKAR--NDQLKLEQLEGYGETSVRNLFAAIDA 533 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYY------LSYQNFAQEINNIIAHNNDDWLSL 598 RR I L R IF+LGIRHVG A+ LA++Y LS A + + ++ + L Sbjct: 534 RRTIELHRLIFALGIRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNTSEAYQDL 593 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + +GD++A+A+VEF+ RNI A++ALL E++ + + + + K +VFTG+L Sbjct: 594 DNIAGIGDVVAEAVVEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKTVVFTGSL 653 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ E+++L L+ Sbjct: 654 SKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTEDEWLALI 713 >gi|299131914|ref|ZP_07025109.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2] gi|298592051|gb|EFI52251.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2] Length = 706 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 312/725 (43%), Positives = 451/725 (62%), Gaps = 33/725 (4%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 K+ + P+E L+ QA+ EL+ L EIS HD+ YYQ P + D++YD L++R AI F Sbjct: 6 KKAVTPVENLTKAQAKVELTRLALEISMHDERYYQKDAPTVSDADYDKLRQRLSAIEERF 65 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L + P+ K+G + + + K+ H++P LSL ++ ED+ +F TR+ RF Sbjct: 66 PELVAKDSPS---QKVGAQPSRAFAKIRHAVPMLSLGNAFSDEDVAEFATRVRRFLNLGA 122 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNI 181 D + EPKIDG +++RYE G+ V AA RGDG GEDV+A +R I +P L + Sbjct: 123 DEPLVIVAEPKIDGLSLSLRYENGELVSAATRGDGFEGEDVTANVRTIKDVPHTLRGKGV 182 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFV 240 P I EVRGEVY+ + DFLALN + +ANPRN+A+G LR+ N +R L FF Sbjct: 183 PAICEVRGEVYMMREDFLALNKKQAEADDTIFANPRNSAAGSLRQKNVEVTASRPLKFFA 242 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + G+ SE+ A Q+EM++ + GF VN + +++YY E+++ R++LPYDID Sbjct: 243 YAWGEMSEMPAPTQFEMVKWLHKAGFVVNPRMTLCRDVEALLTYYREIETERASLPYDID 302 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKVD Q +LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG LTPVARL P Sbjct: 303 GVVYKVDRLDWQNRLGFISRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLTP 362 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GG ++ NATLHNED I +DIR GD V+++RAG+VIP+VV ++ + Sbjct: 363 VTVGGVVVQNATLHNEDEI-----------ARKDIREGDTVVIQRAGDVIPQVVSVVTEK 411 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R +A+ +SFP CPIC S VR+ + A RCTG L C AQ +ERLKHFVSR A Sbjct: 412 RRKNAKSYSFPHKCPICGSHAVREEDE------AVRRCTGALICPAQAVERLKHFVSRLA 465 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 F+IEGLG +Q+ F+ D I P DIFTLQ+R + K+++ G+GDVSV NL+ Sbjct: 466 FDIEGLGDKQIQEFY---DDGL-IMHPVDIFTLQKRDARAVKKLKDREGYGDVSVNNLFA 521 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDD 594 +I+ RR I L R IF+LGIRHVG A+ LA++Y S +N + + ++ Sbjct: 522 AIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGSIENLRAAMAEAAAAQTEEGNTSEA 581 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654 + L + +GDI+A A+VEF+ RN+ A++ LL E+ + + S + K +VF Sbjct: 582 YADLNNIGGIGDIVADAVVEFFAEKRNVKALDELLAEIE-VLPAEQVRTDSAVAGKTVVF 640 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG+L K R +A+ +LGA VS +S+KTD ++ G+ GSKL KA++LGV ++ E+++ Sbjct: 641 TGSLTKFTRDEAKAQAERLGAKVSGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDEW 700 Query: 715 LFLLQ 719 L L++ Sbjct: 701 LKLIE 705 >gi|148257407|ref|YP_001241992.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+)) [Bradyrhizobium sp. BTAi1] gi|166215399|sp|A5EPJ2|DNLJ_BRASB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146409580|gb|ABQ38086.1| DNA ligase (Polydeoxyribonucleotide synthase (NAD+)) [Bradyrhizobium sp. BTAi1] Length = 716 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 307/723 (42%), Positives = 457/723 (63%), Gaps = 16/723 (2%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K ++ + + L+ QA+ E L E+ HD YYQ P I D+EYD L+RR +AI Sbjct: 6 KPKKPVDVAELTKAQAKVEWKRLALELEVHDRLYYQDDAPKISDAEYDELRRRFNAIETR 65 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L SE P+ K+G + KV H++P LSL+ + ED+R F+ RI RF + Sbjct: 66 FPELVSSESPS---QKVGASPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIARFLKLA 122 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 DD I F+ EPKIDG +++RYE G+ V AA RGDG GEDV+A IR + +P+ L N Sbjct: 123 DDR-IDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLKDVPQKLHGRN 181 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P++ EVRGEVY++K FLALN+ G +ANPRN+A+G LR+ +P +R L FF Sbjct: 182 WPDVCEVRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPAITASRPLGFF 241 Query: 240 VHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + G+ S A+ Q M++ GF N R ++ +++++ ++ R+ L YD Sbjct: 242 AYAWGEISGTPPAETQTGMIKWFEQCGFTTNPLTRLCHSVEELIAFHRSIEEQRAELDYD 301 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD Q++LG +R+PRW I+HKF ++A T L DI+IQ+GRTG LTPV +L Sbjct: 302 IDGVVYKVDRIDWQERLGFVSRTPRWAIAHKFPAERAMTVLKDIEIQVGRTGSLTPVGKL 361 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GG ++ N TLHNEDYIKG+ G+V+R GRDIR+GD V+++RAG+VIP+VVD+++ Sbjct: 362 EPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVI 421 Query: 419 NERHPDAQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ++R A+PF P CP + VVR+ TG+ + RCTG AC Q++E LK F S Sbjct: 422 DKRPAQARPFHLPKTCPCPLHTDVVRE-ETATGEEGSRARCTGEFACPYQKIEHLKLFAS 480 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R AF+I+GLG++Q+ FFF+ ++ PADIFTLQ+R + K+E I G+G+ SV N Sbjct: 481 RRAFDIDGLGEKQIAFFFEQG----WVKEPADIFTLQKR--NAGLKLEEIEGYGETSVRN 534 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L+++I+ RR I+LERFI++LG+RHVG A +LA+ Y S+ F + + A + + Sbjct: 535 LFNAIDARREIALERFIYALGMRHVGETTALALARGYGSWDAFHEACLKVAAGDEEAIAE 594 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 + + +GD + +++ ++ N VE L +EV K S I K +VFTGT Sbjct: 595 MDALDQIGDTVIKSVAAYFAEDHNRGIVERLTQEVKILDAEKPKR-HSPIATKTVVFTGT 653 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L+K+ R +A+ +LGA VS +S+KTD ++ G GSKL++AQ+ GV+++ E+++L L Sbjct: 654 LEKMTRDEAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKEAQKHGVQVLTEDEWLQL 713 Query: 718 LQQ 720 + + Sbjct: 714 IAE 716 >gi|254460861|ref|ZP_05074277.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2083] gi|206677450|gb|EDZ41937.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium HTCC2083] Length = 706 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 301/713 (42%), Positives = 449/713 (62%), Gaps = 16/713 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I LS+E+AR EL++L + ++ + Y+ P + D+ YDALK+R AI FP L R Sbjct: 6 ITELSVEEARAELAALSKALNTANVAYHGKDNPDLSDANYDALKQRNAAIEDHFPTLVRE 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +G + K+TH+ +SL + ED+ F I ++ +D + F Sbjct: 66 DSPS---KLVGAPVQDGFGKITHAQRMMSLGNAFTDEDVADFTQGIRKYLGLSNDRPLAF 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE G + AA RGDG +GEDV A I +P+ L N PE+IEVR Sbjct: 123 TAEPKIDGLSLSLRYENGTLIQAATRGDGTTGEDVLANALTIADVPKNLE-NAPEVIEVR 181 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246 GEVY++ DF ALN + G K +ANPRNAA+G LR+L+ ++IT R L FF + G Sbjct: 182 GEVYMTHADFDALNARQVERGSKTFANPRNAAAGSLRQLD-SEITKSRPLRFFAYAWGVL 240 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S+ A Q+ + +++ LGF N ++ ++ +Y +++ R+ L YDIDG+VYKV Sbjct: 241 SDPLANTQHGAIARLKMLGFQTNPLTQRFENVVDLIKHYQQIEQQRAALGYDIDGVVYKV 300 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ + Q +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 301 DDLAYQSRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLSPVTVGGV 360 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNEDYI+G D SG+++RGGRDIRVGD V + RAG+VIPK+ D+ +++R D+ Sbjct: 361 VVSNATLHNEDYIEGRDNSGELIRGGRDIRVGDWVQIYRAGDVIPKIKDVDLSKRPSDSS 420 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 PF FP CP CQS +RD+ A RC+GGL C AQ +E++KHFVSR AF+IEGL Sbjct: 421 PFEFPKICPECQSAALRDVGD------AVRRCSGGLICPAQAVEKMKHFVSRGAFDIEGL 474 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ F+ DP IR PADIFTL+ R +K++N G+G S L+ +I++RR Sbjct: 475 GAKQVEMFY--HDPTLPIREPADIFTLKTRDAQQLSKLKNRDGWGAKSADKLFAAIDERR 532 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 NIS R +++LG+RHVGA+ A +A++Y S+ F ++ D W L+ + VG+ Sbjct: 533 NISFARVLYALGLRHVGAQSASLIARHYGSWAVFVDAMDAASDQVGDAWDRLMSIDGVGE 592 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I+A ++V + P ++ + E++ I + + S + K +VF+GTL+K+ R +A Sbjct: 593 IMASSLVTAFIQPGERASITRVTDELT-IIDAEKPDTDSPVTGKVVVFSGTLEKMTRAEA 651 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA VS +S KTDI+I G GSK +KA +L ++ ++E+ +L L++ Sbjct: 652 KARAEALGAKVSGSVSAKTDILIAGPGAGSKAKKAAELDIETLDEDSWLALIE 704 >gi|126736446|ref|ZP_01752187.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2] gi|126713984|gb|EBA10854.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2] Length = 715 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 307/714 (42%), Positives = 439/714 (61%), Gaps = 18/714 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 +P+ +LS EQA KELS L +++ + Y++ P I D+ YDALKRR AI FPDL Sbjct: 15 VPVASLSPEQATKELSWLATQLNAANTAYHRDDAPDISDATYDALKRRNAAIEAQFPDLK 74 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R + P+ +GG++ KV H + LSL ++ +D+ +F RI ++ D + Sbjct: 75 RQDSPS---ETVGGQIAEGFGKVKHVVRMLSLGNAFDDDDVHEFDQRIRKYLGLAADALL 131 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 +T EPKIDG +++RYE GK + AA RGDG +GE+V+ R I IP ++ P+++E Sbjct: 132 TYTAEPKIDGLSLSLRYEDGKLIQAATRGDGETGENVTNNARTIADIPAKVN-GAPDVLE 190 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244 VRGEVY+S +DF ALN VG K +ANPRNAA+G LR+L+ +IT R L FF + G Sbjct: 191 VRGEVYMSHDDFTALNARQAEVGGKTFANPRNAAAGSLRQLD-AEITKSRPLRFFAYAWG 249 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 S A+ Q + K++ LGF N + ++++Y +++ R+ L YDIDG+VY Sbjct: 250 DLSARLAQTQSGAIAKLKTLGFSTNPLTEACDGPAAMIAHYKGIEAQRANLGYDIDGVVY 309 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD+ +LQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL PV +G Sbjct: 310 KVDDLTLQRRLGFRSTTPRWAIAHKFPAELAWTVLEAIDIQVGRTGALSPVARLRPVTVG 369 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYI G D +G +R GRDIRVGD V V RAG+VIPKV DI + R D Sbjct: 370 GVVVSNATLHNEDYIAGRDGNGDPIREGRDIRVGDWVQVYRAGDVIPKVKDIDLARRPKD 429 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A P+ P+ CP C S +R+ A RCTGG+ C AQ +E+LKHF+SR AF+IE Sbjct: 430 AMPYQMPARCPECGSDAIREEGD------AVRRCTGGIICPAQAVEKLKHFISRTAFDIE 483 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +Q++ F+ I PADIFTL+ R +++N G+GD S NL+D+I++ Sbjct: 484 GLGAKQVEQFYAD----GWIATPADIFTLRVRFSEGLQQLKNREGWGDKSAANLFDAIDE 539 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +R ISL R I+SLGIRHVG A LA +Y S+ F Q + W L + V Sbjct: 540 KREISLARVIYSLGIRHVGENSAALLANHYTSWTAFEQAMTAAQIGEGHAWDELNNIDGV 599 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G ++A +++ Q +++ L+KE+ + S + K +VFTGTL+++ R Sbjct: 600 GAVMATSLITTMQQEAERASIDQLIKELDVQDA-EARATDSPVAGKTVVFTGTLERMTRA 658 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ LGA VS +S KTDI+I G GSK +KA LG++ M+E+ +L L+ Sbjct: 659 EAKARAETLGAKVSGSVSAKTDILIAGPGAGSKAKKAADLGIETMDEDAWLSLI 712 >gi|85714986|ref|ZP_01045971.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A] gi|85698183|gb|EAQ36055.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A] Length = 705 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 306/720 (42%), Positives = 449/720 (62%), Gaps = 33/720 (4%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+++L+ QAR E L EI H++ YYQ P + D+ YDA++RR +AI FPDL Sbjct: 10 PVDSLTRSQARVEHKRLVLEIEAHNERYYQQDAPTVSDAAYDAMQRRLEAIEARFPDLVT 69 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + + P +G KV H++P LSL ++ ++ +F+ RI RF + D+ Sbjct: 70 A---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDAEVAEFVERIRRFLKLGADDIPA 126 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186 EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L +IP E Sbjct: 127 IVAEPKIDGLSLSLRYEHGELVRAATRGDGFTGEDVTANVRTIRDVPHTLRGRDIPAACE 186 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGK 245 +RGEVY+ K DFLALN + A G +ANPRN+A+G LR+ + +R L FF + G+ Sbjct: 187 LRGEVYMLKEDFLALNKKQEAAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAYAWGE 246 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 ++ A+ Q++ML+ +R +GF VN + ++ ++ +Y + R+TL YDIDG+VYK Sbjct: 247 MTDRPAETQHDMLKWLRDVGFMVNPLIELCSSVEQVLQFYRRIGEQRATLGYDIDGVVYK 306 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD Q++LG +RSPRW I+HKFA +QA T L IDIQ+GRTG +TPVARLEPV +GG Sbjct: 307 VDRLDWQERLGFVSRSPRWAIAHKFAAEQAMTILRGIDIQVGRTGAMTPVARLEPVTVGG 366 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHNED I +DI VGD V+V+RAG+VIP+VV +I+ +R +A Sbjct: 367 VVVQNATLHNEDEIT-----------RKDIHVGDTVVVQRAGDVIPQVVSVIIGKRPRNA 415 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 QP+ FP CP+C S VR+ A RCTG L C AQ +ERLKHFVSR AF+I+G Sbjct: 416 QPYVFPHKCPVCGSHAVREEGE------AVRRCTGTLICPAQAVERLKHFVSRLAFDIDG 469 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++Q+ F+ D I P DIFTLQ+R +T K+ + G+GDVSV NL+ +I+ R Sbjct: 470 LGEKQIQEFY---DDGL-IMHPVDIFTLQKRDARATKKLRDREGYGDVSVRNLFAAIDAR 525 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------WLSLI 599 R I L R IF+LGIRHVG A+ LA++Y +NF + D+ + L Sbjct: 526 RKIELNRLIFALGIRHVGEGNAKLLARHYGGIENFRSAMAEAAGAQTDEGNASEAYADLN 585 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + +G+I+A A+VEF+ PRN+ A+ LL+E+ + + S + K +VFTG+L+ Sbjct: 586 NIGGIGEIVANAVVEFFAEPRNVKALNDLLEEIE-VLPVAQTRSDSAVAGKTVVFTGSLE 644 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 K R +A+ ++GA VS +S+KTD+++ G GSKL+ A++ GV++++E+++L L++ Sbjct: 645 KFTRDEAKASAERMGARVSGSVSKKTDLVVAGPGAGSKLKDAEKFGVRVISEDEWLKLIE 704 >gi|154252874|ref|YP_001413698.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1] gi|190359267|sp|A7HVV8|DNLJ_PARL1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|154156824|gb|ABS64041.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1] Length = 710 Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust. Identities = 309/711 (43%), Positives = 452/711 (63%), Gaps = 21/711 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L++E+A +EL L EI HD YYQ P I D+EYD L+RR +AI +P+L R Sbjct: 17 VDHLTLEEAPEELERLAAEIEKHDKLYYQKDAPRISDAEYDTLRRRNEAIEARYPELVRE 76 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +++G + KV H +P LSL ++ ED+R F RI RF K+++ + Sbjct: 77 DSPS---HRVGAQPADGFGKVVHKVPMLSLSNAFDDEDVRDFALRIRRFLNLKEEDILPI 133 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187 T EPKIDG +RYEKGKFV A RGDG GE+V+ ++ I IP L NIP+++EV Sbjct: 134 TAEPKIDGLSAALRYEKGKFVMGATRGDGREGENVTENLKTIGDIPAELKGKNIPDVVEV 193 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S DF ALN+ G+ +ANPRNAA+G LR+L+ +R L FF + G+ Sbjct: 194 RGEVYMSHEDFAALNERQREAGKPVFANPRNAAAGSLRQLDAKITASRPLRFFAYTWGEM 253 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S++ A Q ++ R GF VN + +T ++ +Y++++ R+TL YDIDG+VYKV Sbjct: 254 SDLPADTQSGVMDAFRKWGFTVNPLFGRCDTVEALIDFYHDIEERRATLGYDIDGVVYKV 313 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D Q +LG +RSPRW ++HKF +QA T L I+IQ+GRTG LTPVARL PV +GG Sbjct: 314 DRLDWQNRLGFVSRSPRWALAHKFPAEQAMTVLEKIEIQVGRTGALTPVARLTPVTVGGV 373 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHN D I+ L +R GD V+V+RAG+VIP++V + V +R + Sbjct: 374 VVSNATLHNADEIERLG-----------VRPGDTVVVQRAGDVIPQIVRV-VEDRPRGKK 421 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F FP CP C S VR++NPKTGKL A RCTGGL C AQ +ERL+HFVSR+AF+IEGL Sbjct: 422 KFVFPDTCPECGSHAVREVNPKTGKLDAVARCTGGLVCPAQAVERLRHFVSRNAFDIEGL 481 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++Q+ FF ED I+ P DIFTL R S K+++ G+G S L+D+I+ RR Sbjct: 482 GEKQIAAFF--EDGL--IKKPDDIFTLAARDAKSLKKLKDREGWGATSARKLFDAIDARR 537 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + L+RFIF LGIRHVG AR LA+ Y + +F +++ ++ + L+ + VG+ Sbjct: 538 EVELDRFIFGLGIRHVGETNARLLARSYGTLDHFEEQMRAAADREDEAYAELLSIDGVGE 597 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A++IV+F+ N ++ L + + ++ SS + K +VFTG+L+K+ R +A Sbjct: 598 VLAESIVDFFAEKHNREVLDGLREAGVKGVPLPKQETSSPVAGKTVVFTGSLEKMTRSEA 657 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + QLGA V+ +S KTDI++ G + GSKL KA++LG++I++E+Q++ L Sbjct: 658 KARAEQLGAKVAGSVSAKTDILVAGADAGSKLAKARELGIEILDEDQWIEL 708 >gi|126462048|ref|YP_001043162.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17029] gi|166216229|sp|A3PJ74|DNLJ_RHOS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126103712|gb|ABN76390.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17029] Length = 704 Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust. Identities = 303/712 (42%), Positives = 437/712 (61%), Gaps = 17/712 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ L+ +A EL+ L + I + Y+ + P I D++YDALK R AI FP+L R Sbjct: 6 PVDQLTEAEAATELARLAEAIEAANTAYHTHDAPQISDADYDALKLRNRAIEEQFPELRR 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 S+ P+ +++GG + KV H + LSLE +++ ++ +I RI R+ D + Sbjct: 66 SDSPS---DRVGGALAEGFAKVRHEVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT EPKIDG +++RYEKG+ V AA RGDG +GE+V+ R I +P L P+++EV Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTELD-GAPDLLEV 179 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S DF ALN A G++ +ANPRNAA+G LR+L+P +R L FF + G Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A Q+E + ++ LGF N R +++ + E++ R+ L YDIDG+VYKV Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQ++LG RA +PRW I+HKFA + A T+L IDIQ+GRTG L+PVARL+PV +GG Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R A Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + FP CP C S +R+ RCTGGL C AQQ+ERLKHFVSR AF+IEGL Sbjct: 420 RYRFPETCPECGSEAIREPGDSV------RRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ ++ IR PADIF L R + ++EN G+G S NL+ +I RR Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I+L R IF+LGIRHVG A LA +Y S+ F + +W L+ + VG Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A ++V + AV+AL ++ V+S + K +VFTGTL+K+ R +A Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGKIVVFTGTLEKMSRAEA 649 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA VS +S +TD+++ G GSK ++A LG++ ++E+ +L L+ Sbjct: 650 KARAEALGAKVSGSVSARTDVVVAGPGAGSKAKQAAALGIETIDEDGWLRLI 701 >gi|149915267|ref|ZP_01903795.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b] gi|149810988|gb|EDM70827.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b] Length = 720 Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust. Identities = 304/714 (42%), Positives = 441/714 (61%), Gaps = 16/714 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ LS +QA +EL+ L ++ D Y+ PI+ D+ YDAL +R AI FPDL R Sbjct: 17 PVDKLSADQAAQELARLADLVAQADAAYHGQDAPIMSDAAYDALVQRNAAIEARFPDLMR 76 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P+ ++G + KVTH++ LSL + +++R+F RI R+ + ++ Sbjct: 77 EDSPS---RRVGFTPSEGFGKVTHAVRMLSLGNAFEDDEIREFDARIRRYLGLSPEAALT 133 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIE 186 +T EPKIDG +++RYE+G+ V AA RGDG GE+V+A R I IP L +PE++E Sbjct: 134 YTSEPKIDGLSLSLRYEQGRLVQAATRGDGAEGENVTANARTIADIPHDLGGAGVPELLE 193 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245 VRGEVY+S DF ALN K +ANPRNAA+G LR+L+P R L FF + G Sbjct: 194 VRGEVYMSHADFEALNTRQTERSDKTFANPRNAAAGSLRQLDPKITARRPLKFFAYAWGA 253 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE A Q E + ++ GF N + +++ Y ++ +R+ L YDIDG+VYK Sbjct: 254 HSEPLAPSQMEAIARLAGFGFQTNPLTALCDGPDEMLAQYRRIEQLRAELGYDIDGVVYK 313 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+E +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 314 VNEIALQHRLGYRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLHPVTVGG 373 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYI G DA G +RGG+DIRVGD V V RAG+VIPKV D+ +++R D+ Sbjct: 374 VVVSNATLHNEDYIAGRDAKGNKIRGGKDIRVGDWVQVYRAGDVIPKVADVDLSKRPEDS 433 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P++FP CP C S +R+ A RCTGGL C AQ +E+LKHFVSR AF+IEG Sbjct: 434 APYTFPKVCPECGSDAIREEGD------AVRRCTGGLICPAQAVEKLKHFVSRAAFDIEG 487 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSINK 544 LG +Q++ F IR PADIFTL+ R T+++N G+G+ S NL+D+I++ Sbjct: 488 LGAKQVEQFHADG----WIREPADIFTLKDRYGPGCLTQLKNRDGWGEKSAANLFDAIDE 543 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RR I+L R +F+LGIRHVG + LA++Y ++ F ++ A DW L+ + V Sbjct: 544 RRRIALGRLLFALGIRHVGEAASMMLARFYGTWDEFTAAMDGAAAGEGPDWDRLLGIDGV 603 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G ++AQ++V + +++ L+ + S + K +VFTGTL+K+ R Sbjct: 604 GKVMAQSLVTTFAQDEERASIDRLVAHLEIERAERPDTDGSPVAGKTVVFTGTLEKMTRA 663 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ LGA VS +S KTD++I G GSK + A+QLGV++++E+ +L L+ Sbjct: 664 EAKARAEALGAKVSGSVSAKTDLVIAGPGAGSKAKAAEQLGVEMIDEDGWLALI 717 >gi|110679832|ref|YP_682839.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114] gi|123172419|sp|Q166E0|DNLJ_ROSDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|109455948|gb|ABG32153.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114] Length = 705 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 298/713 (41%), Positives = 440/713 (61%), Gaps = 15/713 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+++L+ + A+KELS L + + Y+ PII D+++DA KRR AI FP L R Sbjct: 5 PLDSLTEKAAKKELSKLADLLDQANTAYHANDAPIISDADFDAYKRRNLAIEERFPHLKR 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++ P +++G + KV HSI LSL ++ D+ F+ RI + D ++ Sbjct: 65 ADSPT---DRVGAAPSAGFSKVVHSIAMLSLANAFDEADVSDFVQRIRKHLGLSDIEALS 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT EPKIDG +++RYE G V AA RGDG GE+V+ R IP IP +S N P+++EV Sbjct: 122 FTSEPKIDGLSLSLRYENGTLVQAATRGDGAIGENVTENARTIPDIPEQIS-NAPDVLEV 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGEVY+S DF ALN + G K +ANPRNAA+G LR+L+ +R L FF + G Sbjct: 181 RGEVYMSHADFEALNARQASAGAKLFANPRNAAAGSLRQLDARITQSRPLRFFAYAWGTL 240 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE K Q + +++++ GF N+ + N +++ Y ++ R++L YDIDG+VYKV Sbjct: 241 SEPLGKTQMQSIERLQSFGFQTNDLTEKCNGPEELLAQYRRIEERRASLDYDIDGVVYKV 300 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ LQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL+PV +GG Sbjct: 301 DDLDLQRRLGFRSTTPRWAIAHKFPAELAWTELQGIDIQVGRTGALSPVARLKPVTVGGV 360 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNEDYI G D G V+RGG+DIRVGD V V RAG+VIPKV D+ + +R DA Sbjct: 361 VVSNATLHNEDYIAGRDNKGDVIRGGKDIRVGDFVQVYRAGDVIPKVADVDLKKRPADAI 420 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP+ CP C S +R+ A RCTGGL C AQ +ERLKHFVSR AF+I+GL Sbjct: 421 PYVFPATCPECGSDALREAGD------AVRRCTGGLICPAQAVERLKHFVSRAAFDIDGL 474 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ F+K I PADIFTL+ R + +++N G+G+ S NL+D+I+ +R Sbjct: 475 GAKQIEQFYKDG----WISEPADIFTLRDRFGSGIQQLKNRDGWGEKSANNLFDAIDDKR 530 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I L R IF+LGIRHVG + +A++Y ++ F + + + + W L+ + VG Sbjct: 531 QIPLARLIFALGIRHVGEAASNLIAQHYSTFDAFEKSMLAAQDKDGEAWDDLLSIDGVGT 590 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++AQ+++ +++ L+ ++ S + K +VFTGTL K+ R +A Sbjct: 591 VMAQSVIHAMGQAAERASIDRLVAQLDVQPSEAVVTDGSPVAGKTVVFTGTLSKMTRAEA 650 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S KTD ++ G GSK +KA +LGV+ ++E+ +L L++ Sbjct: 651 KSRAESLGARVAGSVSAKTDFLVAGPGAGSKAKKAAELGVQTLDEDGWLALIE 703 >gi|254488738|ref|ZP_05101943.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101] gi|214045607|gb|EEB86245.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101] Length = 706 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 305/714 (42%), Positives = 442/714 (61%), Gaps = 17/714 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I ++ LS +QA +EL L ++ + YY P I D+EYD LKRR I FP L Sbjct: 5 IAVQDLSKDQAAEELRRLSGLLAQANRQYYAEDAPQISDAEYDCLKRRNTEIETRFPSLK 64 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R++ P +IG + KV H +P LSL + ED+ +F RI ++ D + Sbjct: 65 RADSPT---EQIGATPSEGFSKVRHEVPMLSLGNAFEDEDVVEFDGRIRKYLGLPSDADL 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG +++RYE G V AA RGDG GE+V+A R I TIP+ L + P++IE Sbjct: 122 DFTAEPKIDGLSLSLRYENGLLVQAATRGDGAVGENVTANARTIQTIPKKLD-SAPDVIE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLG 244 +RGEVY+S +DF ALN G K +ANPRNAA+G LR+L+ +ITR L FF + G Sbjct: 181 IRGEVYMSHDDFDALNARQGERGGKLFANPRNAAAGSLRQLD-AEITRSRPLKFFAYAWG 239 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 SE + Q E +++M +GF N ++ ++ Y ++++ R+TL YDIDG+VY Sbjct: 240 ALSEPLGQTQSEAIKRMENMGFCTNPLTELCSSVAEMIDQYRKIEAQRATLGYDIDGVVY 299 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ +LQ++LG R+ +PRW I+HKF + A T L DI IQ+GRTG L+PVARL+PV +G Sbjct: 300 KVNDLALQERLGFRSTTPRWAIAHKFPAELAWTTLEDITIQVGRTGALSPVARLKPVTVG 359 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYIKG+D+ G +R G+DIRVGD V V RAG+VIPK+ D+ ++ R D Sbjct: 360 GVVVSNATLHNEDYIKGVDSKGNQIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSRRPSD 419 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + PF FP+ CP C S +R+ A RC GGL C AQ +E+LKHFVSR AF+I+ Sbjct: 420 SVPFDFPTICPECGSDAIREEGD------AVRRCMGGLVCPAQAVEKLKHFVSRAAFDID 473 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +Q++ F+ I PADIFTLQ R + +++N G+G+ S T L+ +I+ Sbjct: 474 GLGAKQVEQFYTDG----WIAEPADIFTLQARYGSGVQQLKNREGWGEKSATKLFQAIDD 529 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +R I L R IF+LGIRHVG + +A +Y ++ F + N + W LI V V Sbjct: 530 KRTIPLARLIFALGIRHVGEAASNLIALHYGTWSAFITAMENAREASGPAWDDLISVDGV 589 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G ++AQ++V + +++ L+ E+S S ++ K +VFTGTL+K+ R Sbjct: 590 GQVMAQSLVSTFAQEAERASIDRLVAELSIQDATRPDTQGSPVDGKTVVFTGTLEKMTRA 649 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ +LGA VS +S KTDI++ G GSK +KA +LG++I++E+ +L L+ Sbjct: 650 EAKARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAAELGIEILDEDAWLDLI 703 >gi|91977847|ref|YP_570506.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5] gi|123735250|sp|Q133Y4|DNLJ_RHOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91684303|gb|ABE40605.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5] Length = 714 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 307/720 (42%), Positives = 449/720 (62%), Gaps = 28/720 (3%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A+ EL L I HD YYQ P I D++YDAL+RR +AI FP+L + Sbjct: 12 IDKLTKPKAKVELMRLRLAIEGHDKAYYQDDAPKIPDADYDALRRRLEAIEAKFPELLSA 71 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ +G KV H++P LSL ++ +++ +F+ R+ RF + +D +I Sbjct: 72 SSPS---QTVGAAPARGFSKVQHAVPMLSLGNAFSDDEVGEFVERVQRFLKLEDIPAI-- 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187 EPKIDG +++RYE G V AA RGDG +GEDV+A +R I IP L + IP E+ Sbjct: 127 VAEPKIDGLSLSLRYENGTLVRAATRGDGFTGEDVTANVRTIADIPTTLKAKTIPAACEL 186 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEVY+ K+DFLALN G +ANPRN+A+G LR+ + +R L FF + G+ Sbjct: 187 RGEVYMLKHDFLALNKRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAYAWGEM 246 Query: 247 SE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 S+ + + Q+ ML + GF VN + ++ +++Y + R+ LPYDIDG+VY Sbjct: 247 SDYPMESPTQHAMLAWLGDAGFTVNPEITLCHSVDDALAFYRRIGEQRAALPYDIDGVVY 306 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD Q +LG +RSPRW I+HKFA +QA T L IDIQ+GRTG LTPVARL+PV +G Sbjct: 307 KVDRLDYQARLGFVSRSPRWAIAHKFAAEQAVTVLEKIDIQVGRTGALTPVARLQPVTVG 366 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ NATLHNEDYIKG+ + G +R G DIR GD V+V+RAG+VIP++V +++++R D Sbjct: 367 GVVVQNATLHNEDYIKGVGSDGSPLRDGVDIREGDTVVVQRAGDVIPQIVTVVLDKRPAD 426 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + FP CP+C S R+ A RCTG L C AQ +ERLKHFVSR AF+I+ Sbjct: 427 LPAYKFPHKCPVCGSHAAREEGE------AVWRCTGALICPAQAVERLKHFVSRLAFDID 480 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q+ F + +R PADIFTL+ R + K+E++ G+G+ SV NL+ +I+ Sbjct: 481 GLGEKQIVLFHERG----WVREPADIFTLKARN--AELKLEDLEGYGETSVRNLFAAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------AQEINNIIAHNNDDWLSL 598 RRNI L R IF+LGIRHVG A+ LA++Y S F A E + ++ + L Sbjct: 535 RRNIELNRLIFALGIRHVGEGNAKLLARHYGSIDVFLAAMRAAAEGQTPEGNTSEAYQDL 594 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + +GD++A+A+VEF+ PRN+ A++ALL+E+ + + + + K +VFTG L Sbjct: 595 DNIAGIGDVVAEAVVEFFAEPRNVGALDALLREIE-VLPVEQAKQDTAVAGKTVVFTGAL 653 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ E+++L L+ Sbjct: 654 TKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKARDLGVAVLTEDEWLALI 713 >gi|39936579|ref|NP_948855.1| DNA ligase [Rhodopseudomonas palustris CGA009] gi|39650435|emb|CAE28958.1| DNA ligase [Rhodopseudomonas palustris CGA009] Length = 692 Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust. Identities = 300/705 (42%), Positives = 444/705 (62%), Gaps = 27/705 (3%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L EI HD YYQ P I D++YDAL+RR +AI FP+L + + P +G Sbjct: 3 LRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPELVNA---SSPTQTVGAAPA 59 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 KV H++P LSL + +++ +F R+ RF + D +I EPKIDG +++RY Sbjct: 60 RGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLDDVPAI--VAEPKIDGLSLSLRY 117 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALN 202 E G+ V AA RGDG +GEDV+A +R I +P L +IP E+RGEVY+ K DFLALN Sbjct: 118 ENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKHIPATCELRGEVYMLKQDFLALN 177 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE--IFAKGQYEMLQ 259 +ANPRN+A+G LR+ + T +R L FF + G+ S+ + Q++MLQ Sbjct: 178 KRQEEANETVFANPRNSAAGSLRQKDVTVTASRPLKFFAYAWGEMSDYPMEEPTQHKMLQ 237 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + GF VN + ++ +++Y + R++LPYDIDG+VYKVD Q++LG + Sbjct: 238 WLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPYDIDGVVYKVDRLDYQERLGFVS 297 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 RSPRW I+HKFA +QA+T L IDIQ+GRTG +TPVARL+PV +GG ++ NATLHNEDYI Sbjct: 298 RSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVARLQPVTVGGVVVQNATLHNEDYI 357 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 KG+ G+ +R G DIR GD V+V+RAG+VIP++V +++ +R A+P+ FP CP+C S Sbjct: 358 KGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVVMEKRPAGAEPYHFPHKCPVCGS 417 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 VR+ A RCTG L C AQ +ERLKHFVSR AF+I+GLG++Q++ F + Sbjct: 418 HAVREEGE------AVWRCTGALICPAQAVERLKHFVSRLAFDIDGLGEKQIELFHERG- 470 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 ++ PADIFTL+ R + K+E + G+G+ SV NL+ +I+ RR+I L R +F+LGI Sbjct: 471 ---WVQEPADIFTLKAR--NAELKLEQLEGYGETSVRNLFAAIDARRSIELHRLVFALGI 525 Query: 560 RHVGAEIARSLAKYY------LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 RHVG A+ LA++Y LS A + + ++ + L + +GD++A+A+V Sbjct: 526 RHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNTSEAYQDLDNIAGIGDVVAEAVV 585 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 EF+ RNI A++ALL E++ + + + + K +VFTG+L K R +A+ +L Sbjct: 586 EFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKTVVFTGSLSKFTRDEAKAAAERL 645 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 GA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ E+++L L+ Sbjct: 646 GAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTEDEWLALI 690 >gi|146342488|ref|YP_001207536.1| DNA ligase [Bradyrhizobium sp. ORS278] gi|166215400|sp|A4YZJ3|DNLJ_BRASO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146195294|emb|CAL79319.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Bradyrhizobium sp. ORS278] Length = 716 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 298/722 (41%), Positives = 456/722 (63%), Gaps = 14/722 (1%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K +Q + + L+ QA+ E L E+ HD YYQ P I D+ YD L+RR +AI Sbjct: 6 KSKQSVDVADLTKAQAKVEWKRLALELETHDRLYYQEDAPKISDAAYDELRRRFNAIEKR 65 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L + P+ +G + KV H++P LSL+ + ED+R F+ RI RF + Sbjct: 66 FPELVSRDSPS---QTVGAAPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIARFLKLA 122 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 +D+ I F+ EPKIDG +++RYE G+ V AA RGDG GEDV+A IR + +P+ L N Sbjct: 123 EDDRIAFSAEPKIDGLSMSLRYEGGQLVTAATRGDGAEGEDVTANIRTLKDVPQKLHGRN 182 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P+I E+RGEVY++K FLALN+ G +ANPRN+A+G LR+ +PT +R L FF Sbjct: 183 LPDICEIRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPTITASRPLGFF 242 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G S + A+ Q M++ GF N + ++ +++++ ++ R+ L YDI Sbjct: 243 AYAWGDMSAMPAETQSGMIKWFEHCGFTTNPLTKLCHSVEELIAFHRAIEEQRAELDYDI 302 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +R+PRW I+HKF ++A T L DI+IQ+GRTG TPV +LE Sbjct: 303 DGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAMTVLKDIEIQVGRTGSFTPVGKLE 362 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ N TLHNEDYIKG+ G+V+R GRDIR+GD V+++RAG+VIP+VVD++++ Sbjct: 363 PVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVLID 422 Query: 420 ERHPDAQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 +R DA+ F+FP CP + VVR+ G+ + RCTG AC Q++E LK F SR Sbjct: 423 KRPADAEVFAFPRKCPCPLHTDVVRE-ETAAGEEGSRARCTGEFACPYQKIEHLKLFASR 481 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 AF+I+GLG++Q+ FFF D + ++ PADIFTLQ+R + K+E + G+G+ SV NL Sbjct: 482 RAFDIDGLGEKQIQFFF---DEGW-VKEPADIFTLQKR--NAKLKLEEVEGYGETSVRNL 535 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +++I RR ++LERFI++LG+R+VG A +LA+ Y S++ F + + + + Sbjct: 536 FNAIEARREMALERFIYALGMRYVGETTALALARGYGSWEAFHDACLKVANGDEEAIAEM 595 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + +G+ + +++ ++ N VE L +EV K +S I K +VFTGTL Sbjct: 596 DALDQIGETVIKSVAAYFGEDHNRGIVERLTREVKILDAEKPKR-NSPIATKTVVFTGTL 654 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +K+ R +A+ +LGA VS +S+KTD ++ G GSKL+ A++ GVK++ E+++L L+ Sbjct: 655 EKMTRDEAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVKVLTEDEWLQLI 714 Query: 719 QQ 720 + Sbjct: 715 GE 716 >gi|146277206|ref|YP_001167365.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17025] gi|166216230|sp|A4WRP6|DNLJ_RHOS5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145555447|gb|ABP70060.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17025] Length = 704 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 297/685 (43%), Positives = 424/685 (61%), Gaps = 17/685 (2%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 Y+ + P I D++YDALKRR AI FP L RS+ P+ ++GG + KV H + Sbjct: 33 YHTHDAPRISDADYDALKRRNRAIEERFPALRRSDSPS---ERVGGALAEGFAKVRHEVR 89 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSLE + + ++ ++I RI RF D + FT EPKIDG +++RYEKG+ V AA R Sbjct: 90 MLSLENAFELAEVEEWIERIRRFLGHVGD--LRFTAEPKIDGLSLSLRYEKGRLVQAATR 147 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG +GE+V+ R I +P L+ P+++EVRGEVY+ DF ALN+ A G++ +A Sbjct: 148 GDGETGENVTENARTIGDLPTELT-GAPDLLEVRGEVYMRHADFAALNERQEATGQRLFA 206 Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+P +R L+FF + G SE A Q + ++ LGF N R Sbjct: 207 NPRNAAAGSLRQLDPAVTASRPLHFFAYAWGAHSEPLADTQQGAIARLSALGFATNPLTR 266 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 ++++Y +++ R++L YDIDG+VYKVD+ +LQ++LG RA +PRW I+HKFA + Sbjct: 267 LCTGPDELLAHYADIERQRASLGYDIDGVVYKVDDLALQRRLGFRASTPRWAIAHKFAAE 326 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 A T+L IDIQ+GRTG L+PVARL+PV +GG ++ NATLHNEDYI G D+ G+ +RGG+ Sbjct: 327 LAWTQLEGIDIQVGRTGALSPVARLKPVTVGGVVVANATLHNEDYIAGRDSKGQEIRGGK 386 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIRVGD V V RAG+VIPKV ++ ++ R A+P+ FP CP C S +R+ Sbjct: 387 DIRVGDWVQVYRAGDVIPKVAEVDLSRRPEGAEPYRFPDTCPDCGSAAIREPGDSV---- 442 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 RCTGGL C AQQ+ERLKHFVSR AF+IEGLG +Q++ ++ IR PADIF L Sbjct: 443 --RRCTGGLICPAQQVERLKHFVSRAAFDIEGLGARQVEALWRD----GWIRQPADIFEL 496 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 R + ++EN G+G S NL +I RR I+L R IF+LGIRHVG A LA + Sbjct: 497 PNRYRDGLQRLENREGWGRKSAENLLAAIEARRRIALHRLIFALGIRHVGETTATLLATH 556 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 Y S+ F + +W L+ + VG ++A ++V + A++AL ++ Sbjct: 557 YGSWAAFEAAMTRAEVGTGSEWQDLLSIDGVGAVLATSLVTTFHQEAERAAIDALAAHLT 616 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 V S I K +VFTGTL+K+ R++A+ LGA VS +S +TD+++ G Sbjct: 617 VEDAEMRAPVESPIAGKIVVFTGTLEKMSRNEAKARAEALGAKVSGSVSARTDLVVAGPG 676 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLL 718 GSK ++A LGV+ + E+ +L L+ Sbjct: 677 AGSKAKQAAALGVETIGEDAWLRLI 701 >gi|260462100|ref|ZP_05810344.1| DNA ligase, NAD-dependent [Mesorhizobium opportunistum WSM2075] gi|259031960|gb|EEW33227.1| DNA ligase, NAD-dependent [Mesorhizobium opportunistum WSM2075] Length = 734 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 303/732 (41%), Positives = 441/732 (60%), Gaps = 32/732 (4%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+++LS +A EL L +EI+ HD Y+ P I D+EYDAL+RR AI FP L R Sbjct: 5 PVDSLSESEAEAELQRLAEEIAEHDRRYHTEDAPTITDAEYDALRRRNLAIEERFPGLVR 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P+ ++G KV H++P LSL K + ED+ FI R RF+ + D I Sbjct: 65 EDSPS---LRVGAAPAEGFAKVRHAVPMLSLAKAYTDEDVTDFIERGRRFFDRDKDLDIA 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186 FT EPKIDG ++RYEKG FV A RG+G GED++A +R I IP L PEIIE Sbjct: 122 FTAEPKIDGLSASLRYEKGVFVQGATRGNGTVGEDITANLRTIADIPAKLKGSGWPEIIE 181 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 +RGEVY++ +F AL A G + Y NPRN A+G LR+ + + +R L FF + G Sbjct: 182 IRGEVYMTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLKFFAYAWGY 241 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 T+E A QY +QK GF ++ + +A + +V++Y+ ++ RS+L YDIDG+VYK Sbjct: 242 TTEDPAPTQYGAVQKFADWGFKISPLMVRAKSVEELVAHYHRIEEQRSSLGYDIDGVVYK 301 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ LQ++ G PRW I+HKF +QA T + IDIQ+GRTG L PVARL PV +GG Sbjct: 302 VDQLELQRRWGFVTGEPRWAIAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVGG 361 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ N TLHNEDYIKG D++G+ +R G D+R+GD V+++RAG+VIP++V +++++R DA Sbjct: 362 VVVENVTLHNEDYIKGFDSNGQPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPADA 421 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ FP CP+C S R++N KTGK + RCTG L C+AQ +ERL+HFVSR A +IEG Sbjct: 422 TPYEFPHTCPVCGSPATREINEKTGKEDSRRRCTGELICAAQAVERLRHFVSRGALDIEG 481 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI-------------------EN 526 LG + +D FF A I+ ADIFTL+ R+ T + +N Sbjct: 482 LGAENIDTFFN----AGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAASGKTRKN 537 Query: 527 ILGFGD---VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 + D + L+ +I+ RR L+RFIF+LGIRH+G A LA+ + + + + Sbjct: 538 VRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAALLARTFSTIEELIR- 596 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 + A D + +GD + A+ +F+ N RN +E LL++V P + Sbjct: 597 VGKETAAAEDPHTVFPSINGIGDTVIDALRDFFGNQRNDDVLEKLLEQVKPKPYIVTVSA 656 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 SE+ K +VFTGTL+K+ R +A+ +LGA V+ +S KTD+++ G GSKL+ A + Sbjct: 657 DSEVAGKTIVFTGTLEKMTRSEAKAMAERLGAKVAGSVSAKTDLLVAGPGAGSKLKLASE 716 Query: 704 LGVKIMNEEQFL 715 LGV++++E+ +L Sbjct: 717 LGVEVIDEDTWL 728 >gi|221639033|ref|YP_002525295.1| DNA ligase [Rhodobacter sphaeroides KD131] gi|254781405|sp|B9KRK2|DNLJ_RHOSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221159814|gb|ACM00794.1| DNA ligase [Rhodobacter sphaeroides KD131] Length = 704 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 302/712 (42%), Positives = 438/712 (61%), Gaps = 17/712 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ L+ +A EL+ L + I + Y+ + P I D++YDAL+ R AI FP+L R Sbjct: 6 PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALRLRNRAIEEQFPELRR 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 S+ P+ +++GG + KV H + LSLE +++ ++ +I RI R+ D + Sbjct: 66 SDSPS---DRVGGALAEGFAKVRHEVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT EPKIDG +++RYEKG+ V AA RGDG +GE+V+ R I +P L P+++EV Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTELD-GAPDLLEV 179 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S DF ALN A G++ +ANPRNAA+G LR+L+P +R L FF + G Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A Q+E + ++ LGF N R +++ + E++ R+ L YDIDG+VYKV Sbjct: 240 SEPLAATQHEAIARLAALGFTTNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQ++LG RA +PRW I+HKFA + A T+L ID+Q+GRTG L+PVARL+PV +GG Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDVQVGRTGALSPVARLKPVTVGGV 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R A Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP C S +R+ RCTGGL C AQQ+ERLKHFVSR AF+IEGL Sbjct: 420 PYRFPETCPECGSEAIREPGDSV------RRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ ++ IR PADIF L R + ++EN G+G S NL+ +I RR Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I+L R IF+LGIRHVG A LA +Y S+ F + +W L+ + VG Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A ++V + AVEAL ++ V+S + + +VFTGTL+K+ R +A Sbjct: 590 VLATSLVTAFHQEAERAAVEALAAHLTVEDAEVRAPVASPVAGRIVVFTGTLEKMSRAEA 649 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA VS +S +TD+++ G GSK ++A LG++ ++E+ +L L+ Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLI 701 >gi|77463176|ref|YP_352680.1| DNA ligase [Rhodobacter sphaeroides 2.4.1] gi|123730578|sp|Q3J355|DNLJ_RHOS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77387594|gb|ABA78779.1| DNA ligase [Rhodobacter sphaeroides 2.4.1] Length = 704 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 303/712 (42%), Positives = 438/712 (61%), Gaps = 17/712 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ L+ +A EL+ L + I + Y+ + P I D++YDALK R AI FP+L R Sbjct: 6 PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALKVRNRAIEEQFPELRR 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 S+ P+ +++GG + KV H + LSLE +++ ++ +I RI R+ D + Sbjct: 66 SDSPS---DRVGGALAEGFAKVRHDVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT EPKIDG +++RYEKG+ V AA RGDG +GE+V+ R I +P L P+++EV Sbjct: 121 FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTELD-GAPDLLEV 179 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S DF ALN A G++ +ANPRNAA+G LR+L+P +R L FF + G Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A Q+E + ++ LGF N R +++ + +++ R+ L YDIDG+VYKV Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAQIERQRAALGYDIDGVVYKV 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQ++LG RA +PRW I+HKFA + A T+L IDIQ+GRTG L+PVARL+PV +GG Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R A Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP C S +R+ RCTGGL C AQQ+ERLKHFVSR AF+IEGL Sbjct: 420 PYRFPETCPECGSEAIREPGDSV------RRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ ++ IR PADIF L R + ++EN G+G S NL+ +I RR Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYRDGMQRLENREGWGRKSAENLFAAIEARR 529 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I+L R IF+LGIRHVG A LA +Y S+ F + +W L+ + VG Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A ++V + AV+AL ++ V+S + K +VFTGTL+K+ R +A Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGKIVVFTGTLEKMSRAEA 649 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA VS +S +TD+++ G GSK ++A LG++ ++E+ +L L+ Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLI 701 >gi|332558050|ref|ZP_08412372.1| DNA ligase [Rhodobacter sphaeroides WS8N] gi|332275762|gb|EGJ21077.1| DNA ligase [Rhodobacter sphaeroides WS8N] Length = 704 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 303/712 (42%), Positives = 438/712 (61%), Gaps = 17/712 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ L+ +A EL+ L + I + Y+ + P I D++YDALK R AI FP+L R Sbjct: 6 PVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALKLRNRAIEEQFPELRR 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 S+ P+ +++GG + KV H + LSLE +++ ++ +I RI R+ D + Sbjct: 66 SDSPS---DRVGGALAEGFAKVRHDVRMLSLENAFDLAEVEDWIERIRRYLGHVGD--LL 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT EPKIDG +++RYEKG V AA RGDG +GE+V+ R I +P L + P+++EV Sbjct: 121 FTAEPKIDGLSLSLRYEKGHLVQAATRGDGETGENVTENARTIADLPTELD-SAPDLLEV 179 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S DF ALN A G++ +ANPRNAA+G LR+L+P +R L FF + G Sbjct: 180 RGEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAH 239 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A Q+E + ++ LGF N R +++ + E++ R+ L YDIDG+VYKV Sbjct: 240 SEPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKV 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQ++LG RA +PRW I+HKFA + A T+L IDIQ+GRTG L+PVARL+PV +GG Sbjct: 300 DDLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGV 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NATLHNEDYI G D+ G+ +RGG+DIRVGD V V RAG+VIPKV D+ ++ R A Sbjct: 360 VVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAA 419 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP C S +R+ RCTGGL C AQQ+ERLKHFVSR AF+IEGL Sbjct: 420 PYRFPETCPECGSEAIREPGDSV------RRCTGGLICPAQQVERLKHFVSRAAFDIEGL 473 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ ++ IR PADIF L R + ++EN G+G S NL+ +I RR Sbjct: 474 GAKQVEALWRD----GWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARR 529 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I+L R IF+LGIRHVG A LA +Y S+ F + +W L+ + VG Sbjct: 530 RIALHRLIFALGIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGA 589 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A ++V + AV+AL ++ V+S + + +VFTGTL+K+ R +A Sbjct: 590 VLATSLVTAFHQEAERAAVDALAAHLTVEDAEVRAPVASPVAGRIVVFTGTLEKMSRAEA 649 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA VS +S +TD+++ G GSK ++A LG++ ++E+ +L L+ Sbjct: 650 KARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLI 701 >gi|209963935|ref|YP_002296850.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW] gi|254781401|sp|B6IRF1|DNLJ_RHOCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|209957401|gb|ACI98037.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW] Length = 719 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 304/731 (41%), Positives = 435/731 (59%), Gaps = 42/731 (5%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP+E L+++QA E ++L +EI++H YY P I DS YDAL+ R + FP+L Sbjct: 10 IPVETLTLDQAAAEHAALVREIAHHRALYYGKDAPEIADSAYDALEHRLAGLEARFPELV 69 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P +G + KV H +P LSL+ + ED+ F+ +I RF K+ + + Sbjct: 70 ---TPDSPTQTVGAAPSAGFGKVRHRVPMLSLDNAFTAEDVDGFVEQIARFLNLKEVDGL 126 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 F EPKIDG +++RYE G AA RGDG GEDV+A +R I IP L P ++E Sbjct: 127 EFVAEPKIDGLSLSLRYENGALAQAATRGDGAEGEDVTANVRTIREIPDRLPAGAPSVLE 186 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+ + +F ALN G K +ANPRNAA+G LR+L+P+ R L FF + G Sbjct: 187 VRGEVYMVREEFFALNRRQAEAGEKVFANPRNAAAGSLRQLDPSVTAKRPLCFFAYSWGD 246 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE Q+E LQ+++ LGF V R + ++ YY + + R+ LP+DIDG+VYK Sbjct: 247 LSEPLGATQWEALQRLKALGFRVPAQSRLCRSKAELLDYYAGIGAGRAALPFDIDGVVYK 306 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ LQ++LG R R+PRW +HKF ++A T L I IQ+GRTG LTPVA LEPV +GG Sbjct: 307 VNRLDLQERLGFRTRTPRWATAHKFPAERAQTLLRAITIQVGRTGALTPVAELEPVTVGG 366 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++ ATLHN D I +DIRVGD V+V+RAG+VIP+VV+++ R D+ Sbjct: 367 VVVSRATLHNADEI-----------ARKDIRVGDTVVVQRAGDVIPQVVEVVTERRPADS 415 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 PF FP CP C S VR+ + A RCTGGL C AQ +ERL+HFVSR+AF+IEG Sbjct: 416 APFVFPDHCPECGSAAVREEDG------AVSRCTGGLVCPAQAVERLRHFVSRNAFDIEG 469 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +++ F+ + IR PADIFTL+RR+ ++ + GFG SV NL+ +I+ R Sbjct: 470 LGIERIQLFYDQD----RIRSPADIFTLERREAQRLDRLVAMTGFGRKSVENLFRAIDAR 525 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII---AHNNDD-------- 594 R I L+RFIF+LGIR VG A+ LA+ Y S + + + + N D+ Sbjct: 526 RRIPLDRFIFALGIRQVGEATAKLLARTYRSVGPWTERMAAAAAERSANPDEAKKPELVG 585 Query: 595 --WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIEN 649 + L + +G +A I F+ P N A++ALLKE+ ++ H + S + Sbjct: 586 EAYAELCAIEQIGMSVADDICAFFAEPHNRDALDALLKELE-AVEDHVPPPRADGSPVAG 644 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K +VFTGTL+ + R +A+ LGA V+ +S KTD ++VG + GSK KA++LG+ I+ Sbjct: 645 KTVVFTGTLETMGRSEAKARAEALGAKVAGSVSGKTDYVVVGADAGSKAAKARELGLTIL 704 Query: 710 NEEQFLFLLQQ 720 E+++L L+ Q Sbjct: 705 TEQEWLDLISQ 715 >gi|163731899|ref|ZP_02139346.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149] gi|161395353|gb|EDQ19675.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149] Length = 705 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 292/716 (40%), Positives = 445/716 (62%), Gaps = 17/716 (2%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +P+++L+ + A +ELS L + + + Y+ P + D+EYDA KRR A+ FP L Sbjct: 3 FVPLDSLNEKAAEEELSRLAELLEQANTAYHTKDAPFMSDAEYDAYKRRNLALEDRFPHL 62 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R++ P + +G + KV+HS+ LSL ++ ED+ F+ RI + D Sbjct: 63 KRADSPT---DVVGAAPSAGFAKVSHSMAMLSLANAFDDEDVFDFVQRIRKHLGLSDAEP 119 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + FT EPKIDG +++RYE G V AA RGDG GE+V+A I IP+ + N P+++ Sbjct: 120 LHFTSEPKIDGLSLSLRYENGALVQAATRGDGAVGENVTANALTINDIPQRVP-NAPDVL 178 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL 243 EVRGEVY+S DF ALN++ A G K +ANPRNAA+G LR+L+ IT R L FF + Sbjct: 179 EVRGEVYMSHTDFEALNEKQNAAGAKAFANPRNAAAGSLRQLDAR-ITQNRPLRFFAYAW 237 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G + K Q + +++++ LGF N + + +++ Y ++ R++L YDIDG+V Sbjct: 238 GTLTAPLGKTQSDSIERLKNLGFQTNELTDRCDGPEALLAQYRRIEERRASLDYDIDGVV 297 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD+ LQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL+P+ + Sbjct: 298 YKVDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTELQSIDIQVGRTGALSPVARLKPITV 357 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +++NATLHNEDYI G D G V+R G+DIR GD V V RAG+VIPKV D+ +++R Sbjct: 358 GGVVVSNATLHNEDYIAGRDNKGGVIRDGKDIRAGDYVQVYRAGDVIPKVADVDLDKRPA 417 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 +A PF FP+ CP C S +R+ A RCTGGL C AQ +ERLKHFVSR AF+I Sbjct: 418 EAIPFVFPTTCPECGSDALREAGD------AVRRCTGGLICPAQAVERLKHFVSRAAFDI 471 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG +Q++ F+K + PADIFTL+ R ++ +++N G+G+ S TNL+D+I+ Sbjct: 472 DGLGAKQIEQFYKDG----WVSEPADIFTLRDRYESGMQQLKNRDGWGEKSATNLFDAID 527 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 ++R I L R +F+LGIRHVG + +A++Y ++ F + D W L+ + Sbjct: 528 EKREIPLARLLFALGIRHVGEAASNLIAQHYSTFDAFEKSTLAAQIEEGDAWDDLLSIDG 587 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 VG ++AQ++V P +++ L+ ++ + + S + K +VFTGTL+++ R Sbjct: 588 VGTVMAQSLVHTMGQPAERASIDRLVAQLKVQPSKPIVSDGSPVAGKTVVFTGTLERMTR 647 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ LGA V+ +S KTD ++ G GSK +KA +LG++ ++E+ +L L++ Sbjct: 648 AEAKSRAESLGAKVAGSVSAKTDFLVAGPGAGSKAKKAVELGIRTLDEDGWLALIE 703 >gi|296445905|ref|ZP_06887856.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b] gi|296256573|gb|EFH03649.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b] Length = 713 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 292/720 (40%), Positives = 452/720 (62%), Gaps = 33/720 (4%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 +R+ P+ LS +A+ E S L +EI+ +D YYQ P I D+EYDAL++R +A+ AF Sbjct: 15 ERERPPVAELSPRRAKLEHSRLAEEIAEYDRRYYQEDDPAISDAEYDALRQRYEALEKAF 74 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 P+L + L K G F K+ H + LSL ++ E++ +F+ R+ RF Sbjct: 75 PELG----GDASLTKTVGAAPAEKFAKIRHVVRMLSLGNVFADEEVHEFVARVRRFLNFS 130 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 D + FT EPKIDG ++RYEKG+ V AA RGDG GED++A IR + IP+ L + Sbjct: 131 DAAPLLFTAEPKIDGLSCSLRYEKGELVSAATRGDGEEGEDITANIRTLEEIPQRLRGDV 190 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF 239 IPE++E+RGEVY+ + DF ALN G+ +ANPRN+A+G LR+L+P +R L FF Sbjct: 191 IPEVLEIRGEVYMRREDFFALNQRQAEAGKPLFANPRNSAAGSLRQLDPNVTASRPLRFF 250 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 +G G+ S + A Q M+Q G N + + ++++Y ++++R+TL YDI Sbjct: 251 AYGWGEVSVMPADTQLGMVQAFASFGLATNPLTQLCGSAEELLAHYRNIEALRATLGYDI 310 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD+ LQ +LG +R+PRW ++HKF +QA T + DI+I +GRTG LTP+ARLE Sbjct: 311 DGVVYKVDDIGLQIRLGFVSRAPRWAVAHKFPAEQAKTIVRDIEINVGRTGALTPIARLE 370 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +++NATLHNED I +DIR+GD V+V+RAG+VIP++V+++++ Sbjct: 371 PVTVGGVVVSNATLHNEDEI-----------ARKDIRIGDTVVVQRAGDVIPQIVEVVLD 419 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R A P+ FP CP C S +R+++ K G RCTG L C AQ +ERLKHF SR+ Sbjct: 420 KRPEGATPYVFPHECPACGSAALREIDEK-GVEDVVRRCTGSLVCPAQAIERLKHFASRN 478 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG +Q+++FF +R ++IFTL R + S TK+EN G+G+ SV NL+ Sbjct: 479 AMDIEGLGDKQIEYFFTD----GLVRTASEIFTLAERDRASLTKLENKEGYGETSVRNLF 534 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I+ RR + + RF+++LGIRHVG AR LA+++ + + ++ A ++ + Sbjct: 535 AAIDARRTVPINRFLYALGIRHVGETNARRLARHFPDFASL-RDTAREAAPGSEARERIE 593 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFT 655 + +G ++A+A+ +F+ P N ++ALL VS P+I +S + K +VFT Sbjct: 594 SIEGIGGVVAEALHDFFAEPHNEREIDALLAHVSLEPMPTI-----ENASPVAGKTVVFT 648 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G L+++ R +A+ + GA +S +S+KTD+++ G GSKL KA++LGV++++EE++ Sbjct: 649 GALERLTREEAKAQAERFGAKISGSVSKKTDLVVAGPGAGSKLAKAKELGVEVISEEEWF 708 >gi|300021787|ref|YP_003754398.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888] gi|299523608|gb|ADJ22077.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888] Length = 712 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 292/712 (41%), Positives = 447/712 (62%), Gaps = 26/712 (3%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S+E E++ L EI HD+ YY+ P I D++YDAL+RR + A P+L R+ Sbjct: 20 ATSVED---EIARLSAEIERHDELYYRNDAPEISDADYDALRRRLTQLEDAHPELKRAGS 76 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ K+G + K+ H +P LSL ++ +D+ F+ R+ RF + + + T Sbjct: 77 PS---EKVGSAPVAAFGKIAHDVPMLSLGNAFDDQDVVDFVQRVRRFLNLGESDELEITA 133 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRG 189 EPKIDG I+IRYE G+ V AA RGDG GE+V+A ++ I IP +L ++P++I++RG Sbjct: 134 EPKIDGLSISIRYEGGRLVQAATRGDGAEGENVTANVKTIKDIPHLLVGKDVPDVIDIRG 193 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E+Y+ DF LN A G K +ANPRNAA+G LR+L+ + R L FF + G S+ Sbjct: 194 EIYLGHKDFEKLNAAQAASGGKVFANPRNAAAGSLRQLDSSITAQRPLQFFAYAWGAASK 253 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + Q ++ + G PVN + + ++ YY ++S R+ L YDIDG+VYKV+ Sbjct: 254 LPSDTQRGVVAAFKSWGLPVNPLMEITRSPDELLDYYRGIESKRAKLDYDIDGVVYKVNR 313 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q++LG +RSPRW I+HKFA ++A+T L IDIQ+GRTG LTPVA+LEPV +GG ++ Sbjct: 314 LDYQERLGFVSRSPRWAIAHKFAAERATTVLNKIDIQVGRTGALTPVAKLEPVTVGGVVV 373 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHNED I +DIR GD V+V+RAG+VIP++V++++++R A P+ Sbjct: 374 SNATLHNEDEIS-----------RKDIREGDTVVVQRAGDVIPQIVEVVLDKRPQHAAPY 422 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CPIC S VR+ + + RCTGGL C AQ ERLKHFVSR+AF+IEGLG Sbjct: 423 KFPAVCPICGSHAVRESDEEGNAADVVRRCTGGLVCGAQLKERLKHFVSRNAFDIEGLGG 482 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++++FFF++ I+ ADIFTL++R Q S + + GF + SV L+ +IN RR + Sbjct: 483 EKIEFFFETG----RIKSAADIFTLEKRDQKSDEPLTKVRGFKETSVNKLFAAINARRTV 538 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--AHNNDDWLSLIRVPLVGD 606 L+RF+F+LGIRH+G A+ LAK Y +++ ++ I ++ + + + +G+ Sbjct: 539 PLDRFLFALGIRHIGETTAKDLAKAYGTFEALRAAVDAAIQGGKGSEAYQDIDNIEGIGE 598 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + A+++F+ N ++ALLKEV+ + + + VSS + K +VFTGTL K+ R++A Sbjct: 599 TVVDALIDFFSEQHNQEQLDALLKEVNVTAFKRVQ-VSSPVTGKTVVFTGTLTKLTRNEA 657 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA VS +S+KTD ++ G GSKL+ A+ LGV +++E+ +L L+ Sbjct: 658 KAQAERLGAKVSGSVSKKTDYVVAGAEAGSKLDNARALGVIVLDEDGWLELI 709 >gi|159044058|ref|YP_001532852.1| DNA ligase [Dinoroseobacter shibae DFL 12] gi|190359252|sp|A8LK52|DNLJ_DINSH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157911818|gb|ABV93251.1| DNA ligase [Dinoroseobacter shibae DFL 12] Length = 741 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 300/713 (42%), Positives = 437/713 (61%), Gaps = 17/713 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + +EALS ARKEL+ L + ++ + Y++ P + D++YDALK+R AI FPDL Sbjct: 40 VAVEALSEAAARKELARLSELLARANAEYHRDDAPSLSDADYDALKQRNAAIEARFPDLK 99 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R + P+ +++G + + KVTH++ LSL ++ ED+R F TRI RF +D + Sbjct: 100 RGDSPS---DQVGAAPSDTFSKVTHAVRMLSLANAFSDEDIRDFDTRIRRFLGLAEDAPL 156 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 +T EPKIDG +++RYE G V AA RGDG GE+V+A R I IP L PE++E Sbjct: 157 AYTAEPKIDGLSLSLRYEHGTLVQAATRGDGAVGENVTANARTIDDIPHRLD-GAPEVLE 215 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLG 244 VRGEVY+S DF LN G K +ANPRNAA+G LR+L+ +ITR L FF + G Sbjct: 216 VRGEVYMSHADFAELNARQAETGGKTFANPRNAAAGSLRQLD-AEITRARPLKFFAYAWG 274 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S A+ Q E L + R GF +N + T +++ Y +++ R+TL YDIDG+VY Sbjct: 275 EISAPLAETQTETLARFREFGFTINPLTVRCETPEDMLAQYRAIEAQRATLGYDIDGVVY 334 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+D+ LQ++LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +G Sbjct: 335 KLDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLAPVTVG 394 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYI+G D +G +R G DIRVGD V V RAG+VIPK+ D+ ++ R Sbjct: 395 GVVVSNATLHNEDYIQGRDNTGAPIRWGTDIRVGDWVQVYRAGDVIPKIRDVDLSRRPEG 454 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A PF FP+ CP C S R+ A RC+GGL C AQ +E+LKHFVSR A +I+ Sbjct: 455 AAPFDFPTTCPECGSDAPREPGD------AVRRCSGGLICPAQAVEKLKHFVSRGALDID 508 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +Q++ F++ I PADIFTL+ R +++N G+GD S NL+ +I+ Sbjct: 509 GLGAKQVEQFYRDG----WIAEPADIFTLRARFGQGLQQLKNREGWGDKSAENLFRAIDT 564 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R + +F LGIRH+G + LA +YL+ + ++ + +D W L+ + V Sbjct: 565 ARTAPFAKVLFGLGIRHIGESASSLLANHYLTMEALLAAVDAAVDETSDAWADLLNIDGV 624 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G+++A+A+V +V LL ++ P+ + S + K LVFTGTL+ + R Sbjct: 625 GEVMARALVTTLTQEAERASVNRLLAQIDPAPATPPQVGDSPVAGKTLVFTGTLETMSRA 684 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +A+ LGA V+ +S KTD++I G GSK KA+ LG+++++E+ + L Sbjct: 685 EAKATAEALGAKVAGSVSAKTDLLIAGPGAGSKATKAEALGIEVIDEDAWRVL 737 >gi|298293088|ref|YP_003695027.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506] gi|296929599|gb|ADH90408.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506] Length = 725 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 298/728 (40%), Positives = 451/728 (61%), Gaps = 31/728 (4%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ ++A KE + L EI+ HD YYQ P + D++YDAL+RR +AI FP+L Sbjct: 8 IDVEKLTADEAAKEHARLGDEIAGHDRRYYQDDAPSVSDADYDALRRRYEAIEAQFPELK 67 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + + K+G + KV H +P LSL + E++ +F+ R+ RF D + Sbjct: 68 GIDSLS---EKVGAAPSSKFAKVRHRVPMLSLGNAFADEEVEEFVARVRRFLGLSADAEV 124 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEII 185 FT EPKIDG ++RYE G+FV AA RGDG GEDV+ +R I IP L N +P I Sbjct: 125 AFTAEPKIDGLSCSLRYENGQFVQAATRGDGFEGEDVTNNVRTIGEIPERLKGNDVPGIF 184 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY+ DF A+N+ A G+ +ANPRNAA+G LR+L+P +R L FF + G Sbjct: 185 EVRGEVYMGHADFAAINERQSASGKPLFANPRNAAAGSLRQLDPKITASRPLRFFAYAWG 244 Query: 245 KTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + ++ + + Q+ +++ G P N + ++++Y+ ++ R++L YDIDG+ Sbjct: 245 EVADGALPSDTQFGVIEAFSRWGLPTNPLTVLCRSAQELLAHYHAIEEQRASLGYDIDGV 304 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYKVD +LQ++LG +RSPRW ++HKF ++A T+L I+IQ+GRTG LTPVA+L P+ Sbjct: 305 VYKVDSLALQQRLGFVSRSPRWALAHKFPAQRAITQLERIEIQVGRTGALTPVAKLTPIT 364 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGG-----RDIRVGDRVLVKRAGEVIPKVVDII 417 +GG +++NA+LHNEDYIKG+ G +RG DIR GD V+++RAG+VIP+VV + Sbjct: 365 VGGVVVSNASLHNEDYIKGIGGDGLPIRGTFNDEPVDIREGDWVVIQRAGDVIPQVVSVE 424 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + R DA+P+ FP+ CP C S VR+ A RCTGGL C AQ +ER++HFVS Sbjct: 425 LERRPKDAKPYQFPTICPACGSHAVREDGE------AVRRCTGGLICPAQAVERIRHFVS 478 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT--STTKIENILGFGDVSV 535 RDAF+IEGLG++Q+ FF D ++ PADIFTL+ R S T+++N G+G+ S Sbjct: 479 RDAFDIEGLGEKQVQAFF---DWGL-VKQPADIFTLEARDSAPDSLTRLKNRDGWGETSA 534 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI------NNIIA 589 NL+ +I RR + + RF+++LGIRH+G A+ L ++Y + + + Sbjct: 535 KNLFAAIAARRKVPVNRFLYALGIRHIGETNAKRLMRHYPTIEALREAALAAEMPGEAYP 594 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649 N+ W + + +G ++A+A+V+F+ P N A++ALLKEV+P + Sbjct: 595 KGNEAWAEMNAIEGIGAVVAEAVVDFFHEPNNEAALDALLKEVTPEP-MEAVAGGGAVAG 653 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K +VFTG L+K+ R +A+ +LGA V+ +S+KTD ++ G + GSKL KA++LGV ++ Sbjct: 654 KTVVFTGALEKMTRDEAKAMAERLGAKVAGSVSKKTDYVVAGADAGSKLAKARELGVSVL 713 Query: 710 NEEQFLFL 717 E+++L L Sbjct: 714 TEDEWLEL 721 >gi|83942325|ref|ZP_00954786.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36] gi|83846418|gb|EAP84294.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36] Length = 706 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 298/712 (41%), Positives = 437/712 (61%), Gaps = 17/712 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ LS E+A+ EL+ L + + Y+ P + D+EYD LKRR AI FP L R+ Sbjct: 7 LQELSEEEAKAELARLADLLGRANTAYHTQDAPDLSDAEYDRLKRRNQAIEERFPGLKRA 66 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +K+G KV H + LSL + ED+ F RI ++ + F Sbjct: 67 DSPS---DKVGATPAEGFGKVRHDVAMLSLGNAFEDEDVVDFDARIRKYLGLPSGTPLAF 123 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE G+ V AA RGDG GE+V+A R I TIP + P ++EVR Sbjct: 124 TAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDTIPTRIK-GAPALLEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKT 246 GEVY+ +DF ALN A G K +ANPRNAA+G LR+L+P +ITR L FF + G Sbjct: 183 GEVYMRHDDFDALNARQTANGGKTFANPRNAAAGSLRQLDP-EITRARPLAFFAYAWGAL 241 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S A+ Q++ +++++ GF N + ++++Y +++ R+TL YDIDG+VYKV Sbjct: 242 SAPLAESQFQAIERLKAFGFDTNPLTTLCDGPQEMIAHYRKIEEQRATLGYDIDGVVYKV 301 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ LQ +LG R+ +PRW I+HKF + A TRL DI IQ+GRTG L+PVARL PV +GG Sbjct: 302 NDLGLQDRLGFRSTTPRWAIAHKFPAELAWTRLEDITIQVGRTGALSPVARLHPVTVGGV 361 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNEDYIKGLD+ G +R G+DIRVGD V V RAG+VIPK+ D+ + +R DA+ Sbjct: 362 VVSNATLHNEDYIKGLDSKGARIREGKDIRVGDWVQVYRAGDVIPKIADVDLGKRPEDAR 421 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + +P+ CP C S +R+ A RCTGGL C AQ +E+LKHFVSR AF+I+GL Sbjct: 422 AYVYPTTCPECGSDAIREEGD------AVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGL 475 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ F+ I PADIFTL+ R + +++N G+G+ S L+ +I +R Sbjct: 476 GAKQVEQFYGDG----WIAEPADIFTLKTRYGSGMQQLKNREGWGEKSADKLFQAIEDKR 531 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 ISL R IF+LGIRHVG + +A++Y S+ F + + + + W LI V VG Sbjct: 532 KISLSRLIFALGIRHVGEAASNLIAQHYGSWTAFEAAMGHAKSGDGPAWDDLIGVDGVGQ 591 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++AQ++V + +++ L+ E+S S + K +VFTGTL+K+ R +A Sbjct: 592 VMAQSLVSTFAQEAERASIDRLVTELSVQDVALPDTEGSPVAGKTVVFTGTLEKMTRAEA 651 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA VS +S KTDI++ G GSK +KA LG++ ++E+ +L L+ Sbjct: 652 KARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAADLGIQTLDEDGWLALI 703 >gi|13471538|ref|NP_103104.1| DNA ligase [Mesorhizobium loti MAFF303099] gi|75543387|sp|Q98KC4|DNLJ_RHILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|14022280|dbj|BAB48890.1| DNA ligase [Mesorhizobium loti MAFF303099] Length = 734 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 301/732 (41%), Positives = 438/732 (59%), Gaps = 32/732 (4%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+++LS +A EL L +EI+ HD Y+ P I D+EYDAL+RR AI FP L R Sbjct: 5 PVDSLSESEAEAELKRLAEEIAGHDRRYHAEDAPTITDAEYDALRRRNLAIEERFPGLVR 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P+ ++G KV H++P LSL K + ED+ FI R RF+ + D I Sbjct: 65 EDSPS---RRVGAPPAEGFAKVRHAVPMLSLAKAYTDEDVTDFIERGRRFFDRDKDLDIA 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186 FT EPKIDG ++RYE G FV A RGDG GED++A +R I IP L P++IE Sbjct: 122 FTAEPKIDGLSASLRYENGVFVQGATRGDGAVGEDITANLRTIADIPAKLKGSGWPDVIE 181 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 +RGEVY++ +F AL A G + Y NPRN A+G LR+ + + +R L FF + G Sbjct: 182 IRGEVYMTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLKFFAYAWGF 241 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 T+ A QYE +QK GF ++ + +A + +V+ Y+ ++ RS+L YDIDG+VYK Sbjct: 242 TTADPAPTQYESVQKFADWGFKISPLMVRAKSVEELVAQYHLIEEQRSSLGYDIDGVVYK 301 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ LQ++ G PRW ++HKF +QA T + IDIQ+GRTG L PVARL PV +GG Sbjct: 302 VDQLELQRRWGFVTGEPRWAVAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVGG 361 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ N TLHNEDYIKG D++G +R G D+R+GD V+++RAG+VIP++V +++++R DA Sbjct: 362 VVVENVTLHNEDYIKGFDSNGLPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPADA 421 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ FP CP+C S R++N KTGK + RCTG L C+AQ +ERL+HFVSR A +IEG Sbjct: 422 VPYEFPHTCPVCGSPATREINEKTGKEDSRRRCTGELICAAQAVERLRHFVSRGALDIEG 481 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI-------------------EN 526 LG + +D FF A I+ ADIFTL+ R+ T + +N Sbjct: 482 LGAENIDTFFN----AGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAASGKTRKN 537 Query: 527 ILGFGD---VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 + D + L+ +I+ RR L+RFIF+LGIRH+G A LAK + + + + Sbjct: 538 VRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLAKTFSTIEELIR- 596 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 + A D V +GD + A+ +F+ N RN ++ LL++V P + Sbjct: 597 VGKETAAAEDPHTVFPSVNGIGDTVIDALCDFFGNERNDDVLDKLLEQVKPKPYIVTVSA 656 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 SE+ K +VFTGTL+K+ R +A+ +LGA V+ +S KTD+++ G GSKL+ A + Sbjct: 657 DSEVAGKTIVFTGTLEKMTRSEAKAMAERLGAKVAGSVSAKTDLLVAGPGAGSKLKLASE 716 Query: 704 LGVKIMNEEQFL 715 LGV++++E+ +L Sbjct: 717 LGVEVIDEDTWL 728 >gi|86749131|ref|YP_485627.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2] gi|123004307|sp|Q2IYJ4|DNLJ_RHOP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86572159|gb|ABD06716.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2] Length = 714 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 305/720 (42%), Positives = 445/720 (61%), Gaps = 27/720 (3%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I L+ +A+ E L EI H+ YYQ+ P + D+EYDAL+RR +AI FP+L + Sbjct: 11 IATLTKAKAKVEAMRLRLEIERHNSAYYQHDAPTVSDAEYDALRRRLEAIEAKFPELVSA 70 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +G KV H++P LSL + +++ +F+ R+ RF + SI Sbjct: 71 ---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVTEFVERVQRFLRLDAVPSI-- 125 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187 EPKIDG +++RYE G+ + AA RGDG +GEDV+A +R I IP L + IP E+ Sbjct: 126 VAEPKIDGLSLSLRYEHGELMRAATRGDGFTGEDVTANVRTIADIPTTLKAKTIPAACEL 185 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEVY+ K DFLALN G +ANPRN+A+G LR+ + +R L FF + G+ Sbjct: 186 RGEVYMLKQDFLALNKRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAYAWGEM 245 Query: 247 SE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 S+ + Q++ML ++ GF VN + + +++Y + R+ LPYDIDG+VY Sbjct: 246 SDYPMDEPTQFKMLGWLKQAGFVVNPEITLCTSVDDALAFYRRIGEQRAALPYDIDGVVY 305 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG LTPVARL+PV +G Sbjct: 306 KVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLQPVTVG 365 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ NATLHNEDYIKGL G +R G DIR GD V+V+RAG+VIP++V +++++R D Sbjct: 366 GVVVQNATLHNEDYIKGLGNDGSPLRDGVDIREGDTVVVQRAGDVIPQIVSVVLDKRPAD 425 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A P+ FP CP+C S R+ A RCTG L C AQ +ERLKHFVSR AF+I+ Sbjct: 426 ATPYHFPHKCPVCGSHAAREEGE------AVWRCTGALICPAQAVERLKHFVSRLAFDID 479 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q+ F + ++ PADIFTLQ R + K+E+I G+G+ SV NL+ +I+ Sbjct: 480 GLGEKQIVLFHERG----WVKEPADIFTLQARN--AALKLEDIEGYGETSVRNLFAAIDA 533 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ------NFAQEINNIIAHNNDDWLSL 598 RR I L R IF+LGIRHVG A+ LA++Y + A E + ++ + L Sbjct: 534 RRTIELHRLIFALGIRHVGEGNAKLLARHYGTLDAFLAAMRAAAEGQTEEGNTSEAYQDL 593 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + +G+++A A+VEF+ PRN+ A++ALL E+ + + + + K +VFTG+L Sbjct: 594 DNIAGIGEVVAAAVVEFFAEPRNVAALDALLAELKDVLPAEQARRDTAVAGKTVVFTGSL 653 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 K R +A+ +LGA V+ +S+KTD ++ G + GSKL KA+ LGV ++ E+++L L+ Sbjct: 654 TKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGADAGSKLTKAKDLGVAVLTEDEWLALI 713 >gi|209884394|ref|YP_002288251.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5] gi|254781382|sp|B6JB45|DNLJ_OLICO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|209872590|gb|ACI92386.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5] Length = 706 Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust. Identities = 305/725 (42%), Positives = 446/725 (61%), Gaps = 33/725 (4%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 K+ L ++ L+ QA+ E L EI+ HD+ YYQ P + D+ YD+L++R +A+ F Sbjct: 6 KKPLPSVDQLTKAQAKVEHKRLALEIAMHDERYYQKDAPTVSDAAYDSLRQRLNAVEARF 65 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L ++ P+ K+G + + + K+ H++P LSL ++ E++ +F+ R+ RF Sbjct: 66 PELVTTDSPS---QKVGAQPSRAFAKIRHAVPMLSLGNAFSDEEVAEFVARVRRFLNLGA 122 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNI 181 D + EPKIDG +++RYE G+ V AA RGDG GEDV+A +R I +P L NI Sbjct: 123 DEPLAVVAEPKIDGLSLSLRYENGELVNAATRGDGFEGEDVTANVRTIKDVPHKLKGKNI 182 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFV 240 P + EVRGEVY+ + DFL LN + G +ANPRN+A+G LR+ N +R L FF Sbjct: 183 PAVCEVRGEVYMLREDFLTLNKKQADSGDTIFANPRNSAAGSLRQKNVAITASRPLKFFA 242 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + G+ S + A Q+EM++ GF VN + ++ YY E+++ R+ L YDID Sbjct: 243 YAWGEMSAMPATTQFEMVKWFEKAGFAVNPRMILCRDVEALLRYYREIETERAQLSYDID 302 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKVD Q +LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG LTPVARL Sbjct: 303 GVVYKVDRLDWQTRLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLAA 362 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GG ++ NATLHNED I +DIR GD V+++RAG+VIP+VV ++ ++ Sbjct: 363 VTVGGVVVQNATLHNEDEI-----------ARKDIREGDTVVIQRAGDVIPQVVSVVTDK 411 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R A+P+SFP CP+C S VR+ A RCTG L C AQ +ERLKHFVSR A Sbjct: 412 RPKHAKPYSFPHVCPVCGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRLA 465 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 F+IEGLG +Q+ F+ ++ I P DIFTL +R +T K+++ G+GDVSV NL+ Sbjct: 466 FDIEGLGDKQIHEFYDAK----LIMHPVDIFTLAKRDAHATDKLKDREGYGDVSVRNLFA 521 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------ 594 +I+ RR I L R IF+LGIRHVG A+ LA++Y + +NF + A ++ Sbjct: 522 AIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGTIENFRAAMAEAAAAQTEEGNPSEA 581 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654 + L + VGDI+A A+VEF+ RN+ A+ LL E+ + + S + K +VF Sbjct: 582 YADLNAIGGVGDIVADAVVEFFAEERNVKALNELLHEIE-VLPAEQVRADSAVAGKTVVF 640 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG+L K R +A+ +LGA VS +S+KTD ++ G+ GSKL KA++LGV ++ E+++ Sbjct: 641 TGSLTKFTREEAKAQAERLGAKVSGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDEW 700 Query: 715 LFLLQ 719 L L++ Sbjct: 701 LKLIE 705 >gi|163741160|ref|ZP_02148552.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis 2.10] gi|161385513|gb|EDQ09890.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis 2.10] Length = 741 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 304/755 (40%), Positives = 446/755 (59%), Gaps = 65/755 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++AR L+ E+ D Y+Q P I D++YDA KR A+A FP+LA D Sbjct: 1 MTSDEARARFLLLQDELRVADLAYHQADDPEISDADYDAKKREYRALAEHFPELA---DG 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 L +G + K+TH+ +SL ++ ED+R F + ++ + + +T E Sbjct: 58 ATALETVGAPVASGFGKITHAQRMMSLGNAFDDEDVRDFDKGLRKYLGLGASDPLAYTAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++RYE GK ++AA RGDG GE+V+ R I IP+ ++ P ++EVRGEV Sbjct: 118 PKIDGLSLSLRYENGKLIHAATRGDGAVGENVTENARTIADIPQEIAA-APAVLEVRGEV 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEI 249 Y+S DF ALND A G K +ANPRNAA+G LR+LN +ITR L FF + G+ SE Sbjct: 177 YMSHEDFAALNDRHAAQGGKTFANPRNAAAGSLRQLN-AEITRSRPLRFFAYSWGELSEP 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A+ Q+E L ++R +GF N + +T +++ Y +++ R+TL YDIDG+VYKVD Sbjct: 236 LAETQFEALARLREMGFQTNPLTKHCSTTDALIAQYRLIEAQRATLGYDIDGVVYKVDAL 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL+PV +GG +++ Sbjct: 296 ALQARLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQPVTVGGVVVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ +++R DA PF+ Sbjct: 356 NATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLSKRPEDAVPFA 415 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP C S VR+ A RCTGGL C AQ +E+LKHFVSR AF+I+GLG + Sbjct: 416 FPAACPECGSDAVREEGD------AVRRCTGGLICPAQAVEKLKHFVSRKAFDIDGLGAK 469 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 Q++ F+ D +I+ PADIFTLQ R + K++N G+G+ S NL+ +I ++R I Sbjct: 470 QIEAFYG--DAVLAIKTPADIFTLQARDAKTLAKLKNRDGWGETSAANLFAAIEEKRRIE 527 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------------------------ 585 L R IF LGIRHVG AR LA +Y + A ++ Sbjct: 528 LARLIFGLGIRHVGEVGARDLALHYADWDAMAAAVDTARPAALAQRAADEAEDRERVAAA 587 Query: 586 -------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 N+ + W L + +G + ++ + + N A + Sbjct: 588 QENRRARIKEARDRAVATLNVPSEARAAWDDLTGIDGIGATLGVSLSDAFANTEERAAFD 647 Query: 627 AL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 AL L + P +++ S + +VFTGTL+K+ R +A+ LGA V+ +S+ Sbjct: 648 ALRGHLDIIPPEAPQND----SPVTGLTVVFTGTLEKMTRAEAKARAEGLGAKVAGSVSK 703 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 KTDI++ G GSK +KA+ LGV+I++E+ +L L+ Sbjct: 704 KTDILVAGPGAGSKEQKARDLGVRILDEDGWLELI 738 >gi|319782858|ref|YP_004142334.1| DNA ligase, NAD-dependent [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168746|gb|ADV12284.1| DNA ligase, NAD-dependent [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 734 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 299/732 (40%), Positives = 441/732 (60%), Gaps = 32/732 (4%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+++LS +A EL L +EI+ HD Y+ P+I D+EYDAL RR AI FP L R Sbjct: 5 PVDSLSESEAEAELKRLAEEIAEHDRRYHTEDAPVITDAEYDALARRNLAIEERFPALVR 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P+ ++G KV H++P LSL K + +D+ FI R RF+ + + I Sbjct: 65 EDSPS---LRVGAAPAEGFTKVRHAVPMLSLAKAYTDDDVTDFIERGRRFFDRDKELDIA 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIE 186 FT EPKIDG ++RYE G FV A RG+G GED++A ++ I IP L PE IE Sbjct: 122 FTAEPKIDGLSASLRYENGVFVQGATRGNGAVGEDITANLKTIADIPAKLKGSGWPETIE 181 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 +RGEVY++ +F AL AVG + Y NPRN A+G LR+ +P+ +R L FF + G Sbjct: 182 IRGEVYMTYAEFEALKQRSAAVGGQDYVNPRNTAAGSLRQKDPSVTASRNLKFFAYAWGY 241 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 T+ A QY+ +QK GF ++ + +A + ++++Y+ ++ RS L YDIDG+VYK Sbjct: 242 TTADPAPTQYDSVQKFAEWGFKISPLMVRAKSAEELIAHYHRIEEQRSALGYDIDGVVYK 301 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ LQ++ G PRW I+HKF +QA T + IDIQ+GRTG L PVARL PV +GG Sbjct: 302 VDQLELQRRWGFVTGEPRWAIAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVGG 361 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ N TLHNEDYIKGLD++G+ +R G D+R+GD V+++RAG+VIP++V +++++R DA Sbjct: 362 VVVENVTLHNEDYIKGLDSTGQPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPADA 421 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ FP CPIC S R++N KTGK + RCTG L C AQ +E L+HFVSR A +IEG Sbjct: 422 VPYEFPHTCPICGSPATREINEKTGKEDSRRRCTGELICPAQAVEGLRHFVSRGALDIEG 481 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI-------------------EN 526 LG + +D FF A IR ADIFTL+ R+ T + +N Sbjct: 482 LGAENIDTFFN----AGLIRTAADIFTLRDRRPAVTRALAERREEQARQREAASGKTRKN 537 Query: 527 ILGFGDVS---VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 + D + + L+ +I+ RR L+RFIF+LGIRH+G A LA+ + + + + Sbjct: 538 VRSVEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLARTFSTIEELIR- 596 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 + A D V +GD + A+ +F+ N RN ++ALL++V P + Sbjct: 597 VGKETAAAEDPHSVFPSVNGIGDTVIDALRDFFGNERNDDVLDALLRQVKPKPYIVNVSA 656 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 SE+ K +VFTG+L+K+ R +A+ +LGA V+ +S KTD+++ G GSKL+ A + Sbjct: 657 DSEVAGKTVVFTGSLEKMTRSEAKAMAERLGAKVAGSVSAKTDLVVAGPGAGSKLKLASE 716 Query: 704 LGVKIMNEEQFL 715 LG+++++E+ +L Sbjct: 717 LGIEVIDEDAWL 728 >gi|163736311|ref|ZP_02143730.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis BS107] gi|161390181|gb|EDQ14531.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis BS107] Length = 752 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 305/758 (40%), Positives = 448/758 (59%), Gaps = 65/758 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +++L+ ++AR L+ E+ D Y+Q P I D++YDA KR A+A FP+LA Sbjct: 9 LKSLTSDEARARFLLLQDELRAADLAYHQADDPEISDADYDAKKREYRALAEHFPELA-- 66 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 D L +G + K+TH+ +SL ++ ED+R F + ++ + + + Sbjct: 67 -DGATALETVGAPVASGFGKITHAQRMMSLGNAFDDEDVRDFDKGLRKYLGLGASDPLAY 125 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE GK ++AA RGDG GE+V+ R I IP+ ++ P ++EVR Sbjct: 126 TAEPKIDGLSLSLRYENGKLIHAATRGDGAVGENVTENARTIADIPQEIAA-APAVLEVR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKT 246 GEVY+S DF ALND A G K +ANPRNAA+G LR+LN +ITR L FF + G+ Sbjct: 185 GEVYMSHEDFAALNDRHAAQGGKTFANPRNAAAGSLRQLN-AEITRSRPLRFFAYSWGEL 243 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A+ Q+E L ++R +GF N + +T +++ Y +++ R+TL YDIDG+VYKV Sbjct: 244 SEPLAETQFEALTRLREMGFQTNPLTKYCSTTDALIAQYRLIEAQRATLGYDIDGVVYKV 303 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL+PV +GG Sbjct: 304 DALALQARLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQPVTVGGV 363 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ + +R DA Sbjct: 364 VVSNATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLPKRPEDAV 423 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 PF+FP+ CP C S VR+ A RCTGGL C AQ +E+LKHFVSR AF+I+GL Sbjct: 424 PFAFPAACPECGSDAVREEGD------AVRRCTGGLICPAQAVEKLKHFVSRKAFDIDGL 477 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ F+ D +I+ PADIFTLQ R + K++N G+G+ S NL+ +I ++R Sbjct: 478 GAKQIEAFYG--DAVLTIKTPADIFTLQARDAKTLAKLKNRDGWGETSAANLFAAIEEKR 535 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN--------------------- 585 I L R IF LGIRHVG AR LA +Y + A ++ Sbjct: 536 RIELARLIFGLGIRHVGEVGARDLALHYADWDAMAAAVDTARPAALAQRAADEAEDRERV 595 Query: 586 ----------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 N+ + W L + +G + ++ + + N Sbjct: 596 AAAQENRRARIKEARDRAVATLNVPSEARAAWDDLTGIDGIGATLGVSLSDAFANTEERA 655 Query: 624 AVEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 A +AL L + P +++ S + +VFTGTL+K+ R +A+ LGA V+ Sbjct: 656 AFDALRGHLDIIPPEAPQND----SPVTGLTVVFTGTLEKMTRAEAKARAEGLGAKVAGS 711 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S+KTDI++ G GSK +KA+ LGV+I++E+ +L L+ Sbjct: 712 VSKKTDILVAGPGAGSKEQKARDLGVRILDEDGWLELI 749 >gi|254440003|ref|ZP_05053497.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307] gi|198255449|gb|EDY79763.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307] Length = 706 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 297/712 (41%), Positives = 440/712 (61%), Gaps = 15/712 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 IE L+ ++A +EL+ L ++ + Y+Q P I D++YDALK R I F DL R Sbjct: 7 IENLTKDEAAQELARLSALLAQANAEYHQADAPRIPDADYDALKLRNAMIEARFSDLKRR 66 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +G KV H++ LSL + +D+ +F + +F + + + F Sbjct: 67 DSPS---ETVGATPADGFGKVPHALRMLSLGNAFTDDDVTEFDKSVRKFLGLETGD-LAF 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE GK V AA RGDG GE+V+A R I +P+VL L+ P+I+EVR Sbjct: 123 TAEPKIDGLSLSLRYENGKLVQAATRGDGAVGENVTANARTIKDVPQVL-LDAPKILEVR 181 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+S +DF ALN VG K +ANPRNAA+G LR+L+ + +R L FF + G+ S Sbjct: 182 GEVYMSHSDFAALNTRQSNVGSKTFANPRNAAAGSLRQLDASITKSRPLKFFAYAWGEVS 241 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 A Q + +++ LGF N + + ++++Y +++ R+TL YDIDG+VYKVD Sbjct: 242 APLADTQSGAIARLKTLGFQTNPLTKICASPSEMIAHYRDIEMQRATLGYDIDGVVYKVD 301 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + SLQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL PV +GG + Sbjct: 302 DLSLQRRLGFRSTTPRWAIAHKFPAELAWTTLDAIDIQVGRTGALSPVARLSPVTVGGVV 361 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + NATLHNEDYI G G +RGG+DIRVGD V + RAG+VIPKV D+ +++R + P Sbjct: 362 VANATLHNEDYIAGRGNKGDDIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSKRLGETAP 421 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP+ CP C S VR+ G +V RCTGGL C AQ +E+LKHFVSR AF+I+GLG Sbjct: 422 FDFPTTCPKCGSDAVRE----EGDVV--RRCTGGLICPAQAVEKLKHFVSRAAFDIDGLG 475 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 +Q++ F+ D +++ PADIFTL R S TK+ N G+GD SV L+ +++++R Sbjct: 476 AKQIEAFYN--DDQLAVKEPADIFTLGARDMGSLTKLANRDGWGDTSVKKLWQAVDEKRE 533 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 I + R IF+LGIRHVG + LA +Y ++ F + W L+ + VG + Sbjct: 534 IPVARLIFALGIRHVGENASNLLAIHYGTWSTFEDAMTQASVGEGAGWDDLLGIDGVGAV 593 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A ++V + +++ L+ ++ P ++ +S + K +VFTG+L+K+ R +A+ Sbjct: 594 MAASVVTTFHQSAERASIDRLVAQLRPQDSARPRS-NSPVAGKTVVFTGSLEKMTRAEAK 652 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA VS +S KTD++I G GSK +KA LG++ M+E+ +L L + Sbjct: 653 ARAESLGAKVSGSVSAKTDLLIAGPGAGSKAKKATDLGIETMDEDGWLALTK 704 >gi|126726435|ref|ZP_01742276.1| DNA ligase [Rhodobacterales bacterium HTCC2150] gi|126704298|gb|EBA03390.1| DNA ligase [Rhodobacterales bacterium HTCC2150] Length = 705 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 298/712 (41%), Positives = 439/712 (61%), Gaps = 18/712 (2%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++ +AR EL L + I+ + Y+ P I D+EYD L+R I AFPDL R++ P Sbjct: 8 MTMAEARSELKRLAKVIAAANSSYHTADAPEISDAEYDRLRRLNSEIEAAFPDLKRADSP 67 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + + +G E+ + KV H + LSL + ++ F+ R+ + + FT E Sbjct: 68 S---DNVGAEVAEAFSKVKHDVRMLSLGNAFEDTEVDDFVGRVRSYLGHV--GPLAFTAE 122 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++RYE G+ V AA RGDG +GE+V+ R I IP L N P+++EVRGEV Sbjct: 123 PKIDGLSLSLRYENGELVQAATRGDGETGENVTHSARTISNIPHHLD-NAPDLLEVRGEV 181 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEI 249 Y+ +DF ALN+ I G K +ANPRNAA+G LR+L+ +ITR L FF + G SE Sbjct: 182 YMRHDDFAALNERQIEKGEKTFANPRNAAAGSLRQLD-ANITRSRPLAFFAYAWGALSEP 240 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A Q + ++R LGF N+ + + ++++Y ++ RSTL YDIDG+VYKVD+ Sbjct: 241 LATTQLAAVNRLRSLGFQTNDLTKLCASAQELITHYKSIEEQRSTLGYDIDGVVYKVDDL 300 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL+PV +GG +++ Sbjct: 301 ELQRRLGFRSTTPRWAIAHKFPAELAWTRLRGIDIQVGRTGALSPVARLDPVTVGGVVVS 360 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNEDYI+G G+ +R G+D RVGD V V RAG+VIPK+ D+ + ER DA P+ Sbjct: 361 NATLHNEDYIQGRGNKGEEIRDGKDFRVGDWVQVYRAGDVIPKLADVNLAERPDDAAPYE 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP CQS +RD A RC+GGL C AQ +E+LKHFVSR F+I+GLG + Sbjct: 421 FPTICPECQSPAIRDDGD------AVRRCSGGLICPAQAIEKLKHFVSRGCFDIDGLGNK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK-IENILGFGDVSVTNLYDSINKRRNI 548 Q++ FF DP ++ PADIFTLQ R + K ++N G+GD S L+ +I+++RNI Sbjct: 475 QVEAFFG--DPELPVKEPADIFTLQVRDADNGLKRLKNRDGWGDKSTQKLFAAIDEKRNI 532 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L R IFSLGIRHVG A LA+++ SY F ++ +++ + LI + VG++ Sbjct: 533 PLNRLIFSLGIRHVGEAAANLLARHFSSYDKFIIAMDEATDRDSNAYQDLIAIDGVGEVF 592 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A ++V + +++ L + ++ +S + K +VFTGTL+++ R +A+ Sbjct: 593 ANSLVTAFSATSERASIDRLTQHLNIQDVVQADTGNSAVAGKIVVFTGTLEQMSRAEAKA 652 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GA VS +S+KTDI++ G GSK KA LG+ +++E +L L+ + Sbjct: 653 QAEAAGAKVSGSVSKKTDILVAGPGAGSKATKAAALGITVIDEAAWLALIAE 704 >gi|110634347|ref|YP_674555.1| DNA ligase, NAD-dependent [Mesorhizobium sp. BNC1] gi|123162160|sp|Q11GT5|DNLJ_MESSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110285331|gb|ABG63390.1| DNA ligase, NAD-dependent [Chelativorans sp. BNC1] Length = 703 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 304/712 (42%), Positives = 449/712 (63%), Gaps = 22/712 (3%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP++ L+ EQA+ EL+ L QEI HD YY P + D+EYDAL+RR AI AFP+L Sbjct: 6 IPVDELTEEQAKDELARLAQEIGRHDRLYYSEDAPEVSDAEYDALRRRNLAIEQAFPNLI 65 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R++ P+ +IG KV H +P LSL+ + +D+ F+ R+ RF + + I Sbjct: 66 RADSPS---KRIGAPAVEKFEKVRHKVPMLSLDNAFTDDDVVDFVARVRRFLKMEPHAPI 122 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 T EPKIDG ++IRYE G+ V AA RGDG GE+V+A RA+ IP VLS + PEI+E Sbjct: 123 AMTAEPKIDGLSLSIRYENGRLVSAATRGDGQVGENVTANARAVADIPNVLSGDFPEILE 182 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY++ DFLALN+ A G++ Y NPRN A+G LR+L+ + R L FF + G+ Sbjct: 183 VRGEVYMTHRDFLALNERQRAEGKQTYVNPRNTAAGSLRQLDASITAARPLKFFAYAWGE 242 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE+ ++ Q M++ ++ GF N + T ++ +Y+ ++ R+TL YDIDG+VYK Sbjct: 243 VSEMPSQTQMGMVEALKSYGFRTNKLMCLCETARELLEHYHAIEERRATLGYDIDGVVYK 302 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ +LQ++LG +RSPRW I+HKFA ++A T L DIDIQ+GRTG LTPVARLEPV +GG Sbjct: 303 VNDLALQQRLGYVSRSPRWAIAHKFAAEKAFTILRDIDIQVGRTGALTPVARLEPVTVGG 362 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++TNATLHN + I+ L I++GD V V+RAG+VIP+++ + R DA Sbjct: 363 VVVTNATLHNAEEIERL-----------GIKIGDTVQVQRAGDVIPQILGYAEDRRPADA 411 Query: 426 QPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + F FPS CP ++ VVRD G+ V RC+G AC Q++E L+ FVSR AF+IE Sbjct: 412 KEFVFPSVCPCELKTPVVRDSTAGGGEGV-VRRCSGEFACPFQRIEHLRLFVSRRAFDIE 470 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF+ DP ++ PADIFTL R + K+++ G+G VS NL+ +I Sbjct: 471 GLGEKQIEFFFR--DPDLPVKSPADIFTLAERDAQNIKKLKDKEGWGTVSAGNLFAAIEA 528 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +R I L+R I+ LGIRHVG A +LA+ Y S++ F I + + + + Sbjct: 529 KRTIPLDRMIYGLGIRHVGERTAVTLARGYGSWKAFHDSALAIAGGDLSAREEMDALEDI 588 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQR 663 GD + AI ++ N VEAL +V ++ E+ V+ S + K +VFTG L+++ R Sbjct: 589 GDAVIDAIATYFAEEHNCRLVEALAAQV--NVLEAERPVADSPVAGKTIVFTGALERMSR 646 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ +LGA V+ +S KTD+++ G GSKL+KA +LG+++++E+ + Sbjct: 647 DEAKDMAERLGAKVAGSVSSKTDLVVAGPGAGSKLKKAAELGIEVIDEDMWF 698 >gi|83953544|ref|ZP_00962265.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1] gi|83841489|gb|EAP80658.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1] Length = 706 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 295/712 (41%), Positives = 434/712 (60%), Gaps = 17/712 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ LS E+A+ EL+ L + + Y+ P + D+EYD LKRR AI FP L R+ Sbjct: 7 LQELSEEEAKAELARLADLLGRANAAYHTQDAPDLSDAEYDRLKRRNQAIEERFPRLKRA 66 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +K+G KV H + LSL + ED+ F RI ++ + F Sbjct: 67 DSPS---DKVGAAPAEGFGKVRHDVAMLSLGNAFEDEDVVDFDARIRKYLGLPSGTPLAF 123 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE G+ V AA RGDG GE+V+A R I TIP + P ++EVR Sbjct: 124 TAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDTIPTRIQ-GAPALLEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKT 246 GEVY+ +DF ALN A G K +ANPRNAA+G LR+L+ +ITR L FF + G Sbjct: 183 GEVYMRHHDFDALNARQTANGGKTFANPRNAAAGSLRQLD-AEITRARPLAFFAYAWGAL 241 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S A Q+ ++++ GF N + ++++Y +++ R+TL YDIDG+VYKV Sbjct: 242 SAPLADTQFHAIERLSAFGFDTNPLTTLCDGPQEMIAHYRKIEEQRATLGYDIDGVVYKV 301 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ +LG R+ +PRW I+HKF + A TRL DI IQ+GRTG L+PVARL+PV +GG Sbjct: 302 NDLALQDRLGFRSTTPRWAIAHKFPAELAWTRLEDITIQVGRTGALSPVARLKPVTVGGV 361 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNEDYIKGLD+ G +R G+DIRVGD V V RAG+VIPK+ D+ + +R D++ Sbjct: 362 VVSNATLHNEDYIKGLDSKGASIRDGKDIRVGDWVQVYRAGDVIPKIADVDLGKRPEDSE 421 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + +P+ CP C S +R+ A RCTGGL C AQ +E+LKHFVSR AF+I+GL Sbjct: 422 AYVYPTTCPECGSDAIREEGD------AVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGL 475 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ F+ I PADIFTL+ R + +++N G+G+ S L+ +I +R Sbjct: 476 GAKQVEQFYADG----WIAEPADIFTLKARYGSGMQQLKNREGWGEKSADKLFQAIEDKR 531 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I L R IF+LGIRHVG + +A++Y S+ F + + + + W LI V VG Sbjct: 532 KIPLSRLIFALGIRHVGEAASNLIAQHYGSWTAFEAAMGHAKSGDGPAWDDLIGVDGVGQ 591 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++AQ++V + +++ L+ E+S S + K +VFTGTL+K+ R +A Sbjct: 592 VMAQSLVSTFAQEAERASIDRLVTELSVQDVARPDTEGSPVAGKTVVFTGTLEKMTRAEA 651 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA VS +S KTDI++ G GSK +KA LG++ ++E+ +L L+ Sbjct: 652 KARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAADLGIQTLDEDGWLALI 703 >gi|312114833|ref|YP_004012429.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100] gi|311219962|gb|ADP71330.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100] Length = 777 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 306/739 (41%), Positives = 447/739 (60%), Gaps = 51/739 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E LS E A+ E +L EI+ HD YQ + P I D+EYD L+ R +A+ AFP L Sbjct: 57 EHLSAEDAKDEHDALAAEIARHD-LLYQDAAPEISDAEYDRLRLRLNALEAAFPSLI--- 112 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P P +G + KV H++ LSL +++ ED+ F R+ RF + D ++ T Sbjct: 113 TPESPSQTVGATPSEKFAKVRHTVRMLSLGNVFSDEDVADFAGRVRRFLKFAPDEALDVT 172 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 E KIDG +++RYE G+ AA RGDG GEDV+A +R I IP+V+ N +P + EVR Sbjct: 173 AEMKIDGLSVSLRYENGRLAVAATRGDGSEGEDVTANVRTIADIPQVIRANDVPAVFEVR 232 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF------VH 241 GEVY+S DF ALN+ + G + +ANPRNAA+G LR+L+P R L FF V Sbjct: 233 GEVYMSHADFQALNERQVGKGGRMFANPRNAAAGSLRQLDPAITAARPLRFFAWGWGEVR 292 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G G+ S + A + +LQ + GFP+ V + +++ Y ++ R++L YDIDG Sbjct: 293 GWGEASALPADTNFGVLQAIHGWGFPLPP-VEICRSVEEMLAVYRAIEMKRASLGYDIDG 351 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKV+ LQ++LG +R+PRW +HKF+ ++A+T L IDIQ+GRTG LTPVA+L PV Sbjct: 352 VVYKVNRLDLQERLGFISRTPRWATAHKFSAEKATTVLNGIDIQVGRTGALTPVAKLAPV 411 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG ++ NATLHNED I+ +D+R+GD V+V+RAG+VIP+++ ++ +R Sbjct: 412 TVGGVVVQNATLHNEDEIRR-----------KDVRIGDTVIVQRAGDVIPQILGPVLEQR 460 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 DA F FP+ CP+C S VR+ +PKTGK+ A RCTGGL C+AQ +ERL+HFVSR AF Sbjct: 461 PADAVEFVFPTLCPVCGSHAVRETHPKTGKVDAVRRCTGGLICAAQAVERLRHFVSRHAF 520 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG++ + FF I+ PADIFT+ R K+ G+G S NL+ + Sbjct: 521 DIEGLGEKNIQAFFDEG----RIKAPADIFTMAARDGVDLPKLSEKEGWGAQSAANLFAA 576 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF--------AQEINN-----II 588 I RR ISLERFIF+LGIRHVG A+ LAK + S A E+ + Sbjct: 577 IEARRTISLERFIFALGIRHVGETTAKLLAKTFGSLDALRAAMAEPDAAELRPGDELLLE 636 Query: 589 AHNNDDWLSLIRVPL---------VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639 + + +D SL R + +GD++AQ+IV+F+ P N AV+AL +E++ + Sbjct: 637 SASGEDKRSLHRAIILAKLNEIDGIGDVVAQSIVDFFDEPHNREAVDALRRELTIEAYKP 696 Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 ++ VSS + +VFTG L++ R +A+ + GA V+ +S+ T ++ G GSKL+ Sbjct: 697 DQ-VSSLLAGATVVFTGKLERFTRDEAKAQAERFGAKVAGSVSKATTYLVAGPGAGSKLK 755 Query: 700 KAQQLGVKIMNEEQFLFLL 718 KA+ LGVK+M E+++L ++ Sbjct: 756 KAEDLGVKVMTEDEWLEMI 774 >gi|254510866|ref|ZP_05122933.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium KLH11] gi|221534577|gb|EEE37565.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium KLH11] Length = 750 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 301/752 (40%), Positives = 440/752 (58%), Gaps = 59/752 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ E A++EL+ L E+ + Y+ P + D +YDALKRR I FPDL R++ P Sbjct: 10 LTEEDAQQELARLAAELLRANQLYHAEDAPELSDGDYDALKRRNAEIEARFPDLKRTDSP 69 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++G + KV+H++ +SL ++ D+ F I ++ D + FT E Sbjct: 70 S---EQVGARPSDGFAKVSHAMRMMSLGNAFDDTDIVDFDRSIRKYLGLTGDAPLAFTAE 126 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++RYE+G+ V AA RGDG GE+V+A R + IP ++ P+++EVRGEV Sbjct: 127 PKIDGLSLSLRYEQGELVQAATRGDGEVGENVTANARTVADIPHRIA-GAPDVLEVRGEV 185 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEI 249 Y+S DF ALN G K +ANPRNAA+G LR+L+ ++ITR L FF + G+ S Sbjct: 186 YMSHQDFEALNTRQAETGGKTFANPRNAAAGSLRQLD-SEITRARPLKFFAYAWGELSAP 244 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A+ Q +Q+++ GF +N R T ++ +Y +++ R+TL YDIDG+VYKVD+ Sbjct: 245 LAETQMGAIQRLKAFGFQINALTRLCATPSQMLDHYRRIEAQRATLGYDIDGVVYKVDDL 304 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG +++ Sbjct: 305 GLQSRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLHPVTVGGVVVS 364 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNEDYI G DA G V+R G+DIRVGD V V RAG+VIPK+ D+ +++R DAQP++ Sbjct: 365 NATLHNEDYIAGRDAKGGVIRDGKDIRVGDWVQVYRAGDVIPKLADVDLSKRPADAQPYA 424 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP C S R+ A RCTGGL C AQ +E+LKHFVSR AF+IEGLG + Sbjct: 425 FPTTCPECGSDATREEGD------AVRRCTGGLICPAQAVEKLKHFVSRKAFDIEGLGAK 478 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 Q++ F+ DP I PADIFTLQ R + +++N G+GD S NL+++I +R I Sbjct: 479 QIEMFYG--DPVLPINTPADIFTLQERDTKALARLKNRDGWGDTSANNLFEAIEDKRKIP 536 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQ-------------------NFAQEINNIIAH 590 R +F+LGIRHVG A+ LA +Y + + A+E+ I A Sbjct: 537 FARLLFALGIRHVGEVGAKDLALFYRDWDVMAASIDTARPAALAQRAADEAEEVERIAAA 596 Query: 591 NN------------------------DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 + W LI + +G + ++ + + N A + Sbjct: 597 DEGRRAKLKDARDSVIAGREVPADAASAWADLIGIDGIGATLGLSLSDAFANADERAAFD 656 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 L K + + S + K +VFTGTL+K+ R +A+ LGA VS +S+KTD Sbjct: 657 TLRKHLE-IVAPDAPASDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSQKTD 715 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ G GSK +KA LG++ ++E+ +L L+ Sbjct: 716 LLVAGPGAGSKAKKAADLGIRTLDEDGWLQLI 747 >gi|254476645|ref|ZP_05090031.1| DNA ligase, NAD-dependent [Ruegeria sp. R11] gi|214030888|gb|EEB71723.1| DNA ligase, NAD-dependent [Ruegeria sp. R11] Length = 783 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 303/758 (39%), Positives = 452/758 (59%), Gaps = 65/758 (8%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ++L++E+AR L+ E+ D Y+Q P I D++YDA KR+ A+A AFP+LA Sbjct: 41 QSLTLEEARPLFEQLQDELRAADLAYHQKDAPEISDADYDAKKRQYRALAEAFPNLAAEA 100 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 L+ +G + K+TH+ +SL ++ +D+ F + ++ + +T Sbjct: 101 TE---LDTVGAPVASGFGKITHAQRMMSLGNAFDDDDVADFDKGLRKYLGLSASEPLAYT 157 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 EPKIDG +++RYE G V+AA RGDG GE+V+A R I IP+ + N P I+EVRG Sbjct: 158 AEPKIDGLSLSLRYENGTLVHAATRGDGAVGENVTANARTIDDIPQEIP-NAPAILEVRG 216 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTS 247 EVY+S DF ALN+ A G K +ANPRNAA+G LR+L+ +ITR L FF + G+ S Sbjct: 217 EVYMSHEDFAALNERHEARGGKTFANPRNAAAGSLRQLD-AEITRARPLRFFAYSWGELS 275 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E + Q++ L ++R +GF N R + ++++Y +++ R+TL YDIDG+VYKVD Sbjct: 276 EPLGETQFDALARLRKMGFQTNPLTRHCTSVADLIAHYRQIEEQRATLGYDIDGVVYKVD 335 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL+PV +GG + Sbjct: 336 ALALQDRLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQPVTVGGVV 395 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHNEDYI GLD+ G+ +R G+DIR+GD V V RAG+VIPK+ D+ +++R A+ Sbjct: 396 VSNATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLSKRPDGAEA 455 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 ++FP+ CP C S VR+ A RCTGGL C AQ +E+LKHFVSR AF+I+GLG Sbjct: 456 YAFPTTCPQCDSPAVREEGD------AVRRCTGGLICPAQAVEKLKHFVSRKAFDIDGLG 509 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 +Q++ F+ E +I+ PADIF+LQ R + TK++N G+G+ S NL+ +I +R Sbjct: 510 AKQIEMFYGDE--TLAIKTPADIFSLQARDAQNLTKLKNRDGWGETSAANLFAAIEDKRE 567 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN----IIAHNNDD--------- 594 I+L R IF LGIRHVG AR LA +Y+ + A+ ++ +AH D Sbjct: 568 IALARLIFGLGIRHVGEVGARDLALHYMDWDAMAEAVDTARPAALAHRAADEAEDAERIA 627 Query: 595 ------------------------------WLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 W L + +G + ++ + + N A Sbjct: 628 AAQANRRARIKEVRDSAIAQCDVPPAARAAWEDLTGIDGIGATLGLSLSDAFANADERAA 687 Query: 625 VEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 +AL L V P + + S + K +VFTGTL+K+ R +A+ LGA V+ + Sbjct: 688 FDALRAYLTIVPPEAPQKD----SPVAGKTVVFTGTLEKMTRAEAKARAEGLGAKVAGSV 743 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 S+KTDI++ G GSK +KA+ LG++I++E+ +L L++ Sbjct: 744 SKKTDILVAGPGAGSKEQKARDLGIRILDEDGWLTLIE 781 >gi|163747147|ref|ZP_02154503.1| DNA ligase, NAD-dependent [Oceanibulbus indolifex HEL-45] gi|161379708|gb|EDQ04121.1| DNA ligase, NAD-dependent [Oceanibulbus indolifex HEL-45] Length = 685 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 292/687 (42%), Positives = 422/687 (61%), Gaps = 17/687 (2%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 Y+ P I D+EYDALKRR AI +PDL R + P ++G + KV H++ Sbjct: 12 YHTEDAPEISDAEYDALKRRNAAIEARYPDLKRDDSPT---EQVGAPVAEGFGKVRHAVS 68 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL ++ E++ F RI ++ + D + +T EPKIDG +++RYE G V AA R Sbjct: 69 MLSLANAFDAEEVTDFDARIRKYLGVEADAPLAYTAEPKIDGLSLSLRYENGLLVQAATR 128 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+V+A R I IP + P+++EVRGEVY+S DF ALN+ G K +A Sbjct: 129 GDGAVGENVTANARTIQDIPHQID-EAPDLLEVRGEVYMSHADFAALNERQAERGGKTFA 187 Query: 215 NPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 NPRNAA+G LR+L+ +ITR L FF + G S A+ Q + ++ LGF N Sbjct: 188 NPRNAAAGSLRQLD-AEITRARPLRFFAYAWGALSAPLAETQKGAIDRLAKLGFVTNPLT 246 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 + +V++Y ++++ R+TL YDIDG+VYKVD+ +LQ++LG R+ +PRW I+HKFA Sbjct: 247 ALCDGPSDMVAHYAKIEAQRATLGYDIDGVVYKVDDLALQERLGFRSTTPRWAIAHKFAA 306 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + A TRL IDIQ+GRTG L+PVARL+PV +GG +++NATLHNEDYIKGLD+ G +RGG Sbjct: 307 ELAWTRLEGIDIQVGRTGALSPVARLQPVTVGGVVVSNATLHNEDYIKGLDSKGAEIRGG 366 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 +DIRVGD V + RAG+VIPKV D+ +++R DA PF FPS CP C S +R+ Sbjct: 367 KDIRVGDWVQIYRAGDVIPKVADVDLSKRPKDAAPFVFPSVCPECGSDAIREPGD----- 421 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 A RCTGGL C AQ +E+LKHFV+R AF+I+GLG +Q++ F+ I PADIFT Sbjct: 422 -AVRRCTGGLICPAQAVEKLKHFVARGAFDIDGLGAKQVEQFYHDG----WIAEPADIFT 476 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L+ R +++N G+G S NL+ +I +R I + R IF+LGIRHVG + +A Sbjct: 477 LKERFGNGVQQLKNREGWGPKSADNLFQAIKDKRKIPMSRLIFALGIRHVGDAASNLIAL 536 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 +Y + +F + W LI V VG ++A ++V + +++ L+ + Sbjct: 537 HYGDWDSFETAMAEARGLEGPAWDDLIAVDGVGSVMAGSLVSAFAQEAERASIDRLVAHL 596 Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + S + K +VFTGTL+K+ R +A+ +LGA VS +S KTDI++ G Sbjct: 597 TVVPTERPDTEGSPVAGKTVVFTGTLEKMSRAEAKARAERLGAKVSGSVSAKTDILVAGP 656 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK +KA LG++ ++E+ +L L++ Sbjct: 657 GAGSKAKKAADLGIETLDEDGWLALIE 683 >gi|84686905|ref|ZP_01014789.1| DNA ligase, NAD-dependent [Maritimibacter alkaliphilus HTCC2654] gi|84665102|gb|EAQ11582.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2654] Length = 710 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 296/720 (41%), Positives = 431/720 (59%), Gaps = 15/720 (2%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +E L AR EL+ L ++ + Y+ P + D+ YDA KRR I Sbjct: 1 MTGHSETAVEKLDEAGARAELARLADLLASANTAYHTEDAPEMSDAAYDAAKRRNAEIEA 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP+L R + P +++G KV H + LSL ++ + + F ++ F Sbjct: 61 RFPELKRDDSPT---DQVGAAPAEGFSKVRHRVRMLSLANAFDDDHVIDFDRQVRAFLGF 117 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + + FT EPKIDG +++RYE G+ + AA RGDG GE+V+A R I IP+ LS Sbjct: 118 SAEEPLAFTAEPKIDGLSLSLRYENGELMQAATRGDGGEGENVTANARTIDDIPQRLS-G 176 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF 238 P+++EVRGEVY+S +DF LN+ A G K +ANPRNAA+G LR+L+ + IT R L F Sbjct: 177 APDVLEVRGEVYMSHDDFARLNESQSAKGGKTFANPRNAAAGSLRQLD-SRITEARPLRF 235 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + + G+ S+ A Q ++K+ LGF N + T + +Y+ ++ R+TL YD Sbjct: 236 YAYAWGELSDPLADTQMGAIEKLADLGFSTNPLTKIVETPEAMFDHYHAIEEQRATLGYD 295 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV++ +LQK+LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL Sbjct: 296 IDGVVYKVNDLALQKRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARL 355 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV +GG +++NATLHNEDYI G D+ G +RGG+DIRVGD V V RAG+VIPKV D+ + Sbjct: 356 SPVTVGGVVVSNATLHNEDYIAGRDSKGGDIRGGKDIRVGDWVQVYRAGDVIPKVADVDL 415 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 +R DA+P+ FP CP C S +R+ A RCTGG+ C AQ +E+LKHFVSR Sbjct: 416 TKRPDDAEPYVFPDTCPECGSEAIREEGD------AVRRCTGGMICPAQAVEKLKHFVSR 469 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 AF+IEGLG +Q++ F+ E IR PADIFT RR + K++N G+G+ S L Sbjct: 470 SAFDIEGLGAKQVEAFYFDE--GLPIREPADIFTFARRDGAALAKLKNRDGWGEKSAAKL 527 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +++I +RR I L R IF+LGIRHVG A LA++Y + F + W L Sbjct: 528 FEAIEERRRIPLNRVIFALGIRHVGENSANLLARHYGDWPTFEAAMTGASPEGGAAWEEL 587 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + + VG+ +A ++V + +++ L+ E+ + S + K +VFTGTL Sbjct: 588 LSIDGVGETMATSLVTTFHQEAERASIDRLVAELDIEPVEAPQTEGSPVAGKTVVFTGTL 647 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +K+ R +A+ LGA VS +S KTD+++ G GSK +KA +LG++ ++E+ +L L+ Sbjct: 648 EKMTRAEAKARAEALGAKVSGSVSAKTDLLVAGPGAGSKAKKAAELGIETIDEDGWLDLI 707 >gi|119386790|ref|YP_917845.1| DNA ligase, NAD-dependent [Paracoccus denitrificans PD1222] gi|166216224|sp|A1B9F5|DNLJ_PARDP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119377385|gb|ABL72149.1| DNA ligase, NAD-dependent [Paracoccus denitrificans PD1222] Length = 765 Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust. Identities = 305/760 (40%), Positives = 444/760 (58%), Gaps = 63/760 (8%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 L P+ L ++ A E + L +E++ + YYQ P I D+EYDA KRR + I FPDL Sbjct: 22 LPPVSGLDVKAAEAEHARLSEEVAQANLAYYQEDAPFISDAEYDASKRRLEEIEARFPDL 81 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 A S P ++G + KV H +P LSLE ++ D+ F+ R+ F Sbjct: 82 AHS---GSPTAQVGAAPDTRFAKVPHRLPMLSLENGFSQGDVEAFVQRVRSFLNLASGAP 138 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEI 184 + T EPKIDG +++RYE G+ V AA RGDG GE+V+A R I IP LS + PE+ Sbjct: 139 LEVTAEPKIDGLSLSLRYEGGRLVQAATRGDGAVGENVTANARTIADIPGQLSGDGYPEV 198 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGE Y+S DF LN GR +ANPRNAA+G LR+L+P+ R L FF + Sbjct: 199 LEIRGECYMSHEDFEKLNQSE--TGRV-FANPRNAAAGSLRQLDPSVTAARPLRFFAYAW 255 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G+ S FA Q E +++M+ GF N R + ++S + E++ +R+TL YDIDG+V Sbjct: 256 GEVSASFAGTQMEAVRRMQAFGFQTNPLTRICASVSEMLSAWAEIEQMRATLGYDIDGVV 315 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKV++ + Q +LG R+ +PRW ++HKF ++A TRL IDIQ+GRTG L+PVARL PV + Sbjct: 316 YKVNDLAYQARLGMRSTTPRWALAHKFPAERAWTRLEAIDIQVGRTGALSPVARLHPVTV 375 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +++NATLHNEDYI G A G +RGG+DIR+GD V V RAG+VIPKV D+ + +R Sbjct: 376 GGVVVSNATLHNEDYIAGRGADGSEIRGGKDIRIGDWVEVYRAGDVIPKVADVDLAKRPS 435 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 +A+P++FP+ CP C S +R+ G V RCTGGL C AQ +E+L+HFVSR AF+I Sbjct: 436 EAEPYAFPTTCPECGSPAIRE----EGDSV--RRCTGGLICPAQAVEKLRHFVSRAAFDI 489 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSI 542 EGLG + ++ F+ I PADIFTLQ R T+++N G+G+ S +L+ +I Sbjct: 490 EGLGAKLVEELFRDG----WIAEPADIFTLQDRYGPGQLTQLKNREGWGEKSAASLFQAI 545 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN----IIAHN------- 591 KRR I L R +F+LGIRHVG A+ LA++Y S++ ++ +AH Sbjct: 546 EKRREIPLARLLFALGIRHVGEVAAQDLARHYGSWEALEIALDTARPAALAHRVAEDAAL 605 Query: 592 --------------------------------NDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 W LI +G ++A ++ + + N Sbjct: 606 AEREAARAEGRRARPSEARAAALAQVDLSPEATAAWTGLIAADGIGPVLAMSLSDAFANE 665 Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 R A++ L+ ++ + + S I K LVFTGTL+K+ R +A+ LGA V+ Sbjct: 666 RERAAIDRLVSFLT-VLPPEARATDSAIAGKTLVFTGTLEKMTRAEAKARAEALGAHVAG 724 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +S KTD++I G GSK +KA +LG+K+++E+++L + Q Sbjct: 725 SVSAKTDLLIAGPGAGSKAKKAAELGIKVIDEDEWLAIAQ 764 >gi|294677201|ref|YP_003577816.1| DNA ligase [Rhodobacter capsulatus SB 1003] gi|294476021|gb|ADE85409.1| DNA ligase (NAD(+)) [Rhodobacter capsulatus SB 1003] Length = 707 Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust. Identities = 296/713 (41%), Positives = 433/713 (60%), Gaps = 21/713 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +++L+ +A E+ L I + Y+ P I D++YDALKRR AI FPDLAR+ Sbjct: 10 LDSLTRAEAEAEVPELVARIEAANHAYHTLDAPKISDADYDALKRRLAAIEARFPDLARA 69 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P ++G + KV H I LSLE + D+ F R+ + ++++ Sbjct: 70 DSPT---MRVGAAVAEGFGKVAHEIRMLSLENAFLDADVADFDGRMRSYLGLGPESALPC 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE G V AA RGDG GE+V+ R I IP+ L+ P ++EVR Sbjct: 127 TAEPKIDGLSLSLRYEDGLLVQAATRGDGEVGENVTENARTIADIPQRLT-GAPAVLEVR 185 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY+S DF ALN G K +ANPRNAA+G +R+L+ +R L FF + G S Sbjct: 186 GEVYMSHADFAALNARQAERGDKTFANPRNAAAGSVRQLDARITASRPLKFFAYSWGVLS 245 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E + Q +++++ LGF N R ++++Y +++ R+TL YDIDG+VYKV+ Sbjct: 246 EPLSDTQLGAIERLKALGFQTNPLTRLCADTAEMLAHYRAIEAQRATLGYDIDGVVYKVN 305 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG R+ +PRW I+HKF + A TRL I+IQ+GRTG L+PVARL PV +GG + Sbjct: 306 DLALQARLGFRSTTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVARLAPVTVGGVV 365 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHNEDYI GL + G+V+R G+DIR GD V V RAG+VIPKV D+ ++ R P AQP Sbjct: 366 VSNATLHNEDYIAGLSSKGEVIRDGKDIREGDWVQVYRAGDVIPKVADVDLSRRDPAAQP 425 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP C S +R+ A RCTGGL C AQ +E+LKHFVSR AF+IEGLG Sbjct: 426 FVFPHLCPECGSEALREEGD------AVRRCTGGLICPAQAVEKLKHFVSRAAFDIEGLG 479 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 +Q++ F+K IR PA+IFTLQ R +++N G+G+ S NL+ +I ++R Sbjct: 480 AKQVEAFYKDG----WIREPAEIFTLQARFGAGLQQLKNREGWGEKSAQNLFQAIEEKRK 535 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 I L R IF+LGIRHVG A A +YL+++ F + + + +W L+ + VG+ Sbjct: 536 IPLARLIFALGIRHVGESSAALFATHYLTWERFEAAMRAAVP-GSAEWQELLSIDGVGET 594 Query: 608 IAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A ++ + A++ L+ V P++ R S + +VFTGTL+++ R + Sbjct: 595 LAASVTAAFHPGAERDAIDRLVTHLTVEPAVPRAS---DSPVAGLTVVFTGTLERMTRAE 651 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ LGA V+ +S KTDI++ G GSK +KA LGV++++EE ++ L+ Sbjct: 652 AKARAEALGAKVAGSVSAKTDILVAGPGAGSKAKKAADLGVRVIDEEAWIRLI 704 >gi|260576789|ref|ZP_05844774.1| DNA ligase, NAD-dependent [Rhodobacter sp. SW2] gi|259021041|gb|EEW24352.1| DNA ligase, NAD-dependent [Rhodobacter sp. SW2] Length = 705 Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust. Identities = 304/712 (42%), Positives = 432/712 (60%), Gaps = 18/712 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 IE L+ +A E L + ++ + Y+Q P + D+ YDA+KRR AI FP LA Sbjct: 7 IEQLTEAEAAVEWQELARAVAQANIDYHQNDAPKLTDATYDAMKRRLAAIEVLFPQLAT- 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +K+G KV H++ LSLE ++ D+ F R+ +F + + Sbjct: 66 ---DSPTSKVGAAPADGFAKVPHAVRMLSLENAFDDTDVTDFDDRVRKFLGHA--APLTY 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE G V AA RGDG GE+V+ R I IP+ L+ P ++EVR Sbjct: 121 TAEPKIDGLSLSLRYEAGVLVQAATRGDGEVGENVTDNARTISDIPQSLT-GAPAVLEVR 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+S DF ALN A G K +ANPRNAA+G LR+L+ + R L FF + G S Sbjct: 180 GEVYMSHADFAALNSRQAARGEKTFANPRNAAAGSLRQLDASITAARPLRFFAYAWGALS 239 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E A Q E + ++ LGF N R + +++ Y E+++ R++L YDIDG+VYKV+ Sbjct: 240 EPLAATQLEAIARLAALGFATNPLTRACTSPDDLLAVYREIEAQRASLGYDIDGVVYKVN 299 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG RA +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG + Sbjct: 300 DLALQARLGFRAATPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVV 359 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + NATLHNEDYI G D+ G +R G+DIR+GD V V RAG+VIPK+ +I + +R + Sbjct: 360 VANATLHNEDYIAGRDSKGNPIRDGKDIRIGDWVQVYRAGDVIPKINNIDLEKRPKTVET 419 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F+FP+ CP C S +R+ G V RCTGGL C AQ +ERLKHFVSR AF+IEGLG Sbjct: 420 FTFPTICPQCGSDAIRE----DGDSV--RRCTGGLICPAQAVERLKHFVSRAAFDIEGLG 473 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSINKRR 546 +Q++ FF DP ++ PADIFTL R S K++N G+G+ S TNL+ +I+++R Sbjct: 474 AKQIEAFFN--DPDLPLKTPADIFTLASRDAASPLKKLKNRDGWGEKSATNLFAAIDEKR 531 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I L R IF+LGIRHVG A LA +Y S+ NF + + DW L + VG Sbjct: 532 SIPLHRLIFALGIRHVGESSAALLANHYGSWSNFEAAMTHAEIGQGADWADLTAIDGVGA 591 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A +++ + P A++AL+ ++ S + K LVFTGTL+K+ R +A Sbjct: 592 VLATSLITTFHQPAERAAIDALVAHLTVQDA-APVATDSPVAGKTLVFTGTLEKMSRAEA 650 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S KTD++I G GSK + A+ LGV++++E +L L+ Sbjct: 651 KARAESLGAKVAGSVSAKTDLVIAGPGAGSKAKAAEALGVQVIDEAAWLALI 702 >gi|255264005|ref|ZP_05343347.1| DNA ligase, NAD-dependent [Thalassiobium sp. R2A62] gi|255106340|gb|EET49014.1| DNA ligase, NAD-dependent [Thalassiobium sp. R2A62] Length = 711 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 295/716 (41%), Positives = 435/716 (60%), Gaps = 24/716 (3%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I ++ L+ A EL+ L + +D Y+ P + D+EYDALKRR AI FPDL Sbjct: 13 IDVDDLTRTAATDELTWLSYVLGQANDDYHGSDAPQMSDAEYDALKRRNMAIEARFPDLK 72 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R + P+ +++G K+TH + LSL + ED+ +F R+ ++ +D ++ Sbjct: 73 RGDSPS---DQVGAAPIDGFGKITHVVRMLSLGNAFTDEDVVEFDRRVRKYLGLED--AL 127 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 +T EPKIDG +++RYE G + AA RGDG GEDV+A R + IP+ L N P+++E Sbjct: 128 AYTAEPKIDGLSLSLRYEGGVLIQAATRGDGAVGEDVTANARMVQDIPQTLK-NAPDVLE 186 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244 VRGEVY+S DF LN A G K +ANPRNAA+G LR+LN +IT R L FF + G Sbjct: 187 VRGEVYMSHADFEDLNTRQEARGAKSFANPRNAAAGSLRQLN-AEITKDRPLRFFAYASG 245 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 S A Q ++++ LGF N + + ++++Y ++ R+TL YDIDG+VY Sbjct: 246 DLSAPLADTQNAAIERLAALGFSTNPLTQLCDDPEAMIAHYRRIEEQRATLGYDIDGVVY 305 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ LQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL+PV +G Sbjct: 306 KVNDLGLQRRLGFRSTTPRWAIAHKFPAELAWTTLEAIDIQVGRTGALSPVARLKPVTVG 365 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYIKGLD+ G +R GRDI VGD V + RAG+VIPK+ D+ + +R Sbjct: 366 GVVVSNATLHNEDYIKGLDSKGAPIREGRDIWVGDWVQIYRAGDVIPKICDVDLAKRLAT 425 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 AQ + FP CP C S VR+ A RC GG+ C AQ +E+LKHFVSR F+I+ Sbjct: 426 AQAYEFPETCPECGSHAVREEGD------AVRRCVGGMICPAQAVEKLKHFVSRGGFDID 479 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +Q++ F ++ PADIFTL+ R + +++N G+GD S +NL+D+I+ Sbjct: 480 GLGAKQVEQFHSDA----WVKEPADIFTLRDRFGSGLQQLKNREGWGDKSASNLFDAIDD 535 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +R I L R IF+LGIRHVG A +A Y ++ F + + D W +LI + V Sbjct: 536 KRRIGLGRLIFALGIRHVGDASANLIANRYGTWSAFEGAMTAAVIGEGDAWETLIDIDGV 595 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 G ++A ++V Q +++ L+ +V ++ + S + K +VFTG+L+K+ Sbjct: 596 GAVMAGSLVRAMQEEAERASIDRLVAHLDVQEAV---QVTSDSPVAGKTVVFTGSLEKMT 652 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA VS +S KTD+++ G GSK +KA LGV+ ++E+ +L L+ Sbjct: 653 RAEAKARAESLGAKVSGSVSAKTDLLVAGPGAGSKAKKAADLGVETIDEDDWLALI 708 >gi|83951899|ref|ZP_00960631.1| DNA ligase, NAD-dependent [Roseovarius nubinhibens ISM] gi|83836905|gb|EAP76202.1| DNA ligase, NAD-dependent [Roseovarius nubinhibens ISM] Length = 748 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 299/732 (40%), Positives = 426/732 (58%), Gaps = 65/732 (8%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 Y+ P I D+EYDALK+R I FP+L R + P+ ++G + KV H I Sbjct: 32 AYHGADAPEISDAEYDALKQRNAEIEARFPELKRDDSPS---EQVGAAPSEGFGKVAHEI 88 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 LSL + D+ F RI ++ ++ +T EPKIDG +++RYE+GK V AA Sbjct: 89 RMLSLGNAFADGDVADFDERIRKYLGLGSGAALAYTAEPKIDGLSLSLRYEQGKLVQAAT 148 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GE+V+A R + IP+ +S PE++EVRGEVY+S DF ALN A G KP+ Sbjct: 149 RGDGAVGENVTANARTVEDIPQEIS-GAPEVLEVRGEVYMSHADFEALNARQEAAGAKPF 207 Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L+P R L FF + G S A+ Q + ++ LGFPVN Sbjct: 208 ANPRNAAAGSLRQLDPGVTAARPLKFFAYAWGALSAPLAETQMGAIARLGALGFPVNPLT 267 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 R+ + ++++Y E++ R+TL YDIDG+VYKVD+ +LQ +LG R+ +PRW I+HKF Sbjct: 268 RRCESVGEMIAHYREIEQGRATLGYDIDGVVYKVDDLALQARLGFRSTTPRWAIAHKFPA 327 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + A TRL IDIQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G DA G +RGG Sbjct: 328 ELAWTRLEGIDIQVGRTGALSPVARLAPVTVGGVVVSNATLHNEDYIAGRDAKGGEIRGG 387 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 +DIRVGD V V RAG+VIPK+ D+ + +R A+ F FP+ CP C S +R+ Sbjct: 388 KDIRVGDWVQVYRAGDVIPKIADVDLAKRPEGAERFDFPTRCPECGSEAIREEGD----- 442 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 A RC+GGL C AQ +E+LKHFVSR AF+IEGLG +Q++ F++ I+ PADIFT Sbjct: 443 -AVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQVEQFYRD----GWIKAPADIFT 497 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 LQ R +++N G+G+ S NL+ +I ++R I L + IF+LGIRH G AR LA Sbjct: 498 LQERYGAGLQQLKNREGWGEKSANNLFAAIEEKRRIPLAKLIFALGIRHAGEVAARDLAL 557 Query: 573 YYLSYQNFAQEIN-------------------------------------------NIIA 589 +Y +Q A+ I+ ++ A Sbjct: 558 HYRDWQAMAEAIDLARPAARAHRAADEAEEAERQAAGAEGRRARVSETRAAAVADCDVPA 617 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSE 646 W LI V +G ++ ++ + + N + A++ L L V+P S Sbjct: 618 EAAAAWADLIAVDGIGAVLGLSLSDAFANDQERAAIDTLVAGLDIVAPDA----PAADSP 673 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +VFTG+L+K+ R +A+ LGA VS +S KTDI++ G GSK KA +LG+ Sbjct: 674 VAGKTVVFTGSLEKMTRAEAKARAESLGAKVSGSVSAKTDILVAGPGAGSKATKAAELGI 733 Query: 707 KIMNEEQFLFLL 718 + ++E+ +L L+ Sbjct: 734 ETLDEDGWLALI 745 >gi|86138407|ref|ZP_01056981.1| DNA ligase, NAD-dependent [Roseobacter sp. MED193] gi|85824932|gb|EAQ45133.1| DNA ligase, NAD-dependent [Roseobacter sp. MED193] Length = 752 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 307/763 (40%), Positives = 448/763 (58%), Gaps = 65/763 (8%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MK+ + + LS EQA+ E L+ +++ D Y+Q P + D+ YDA KRR +A Sbjct: 1 MKQIEPLDPSGLSQEQAQAEFLELQTQLAAADQAYHQNDAPFLSDAAYDAAKRRYKVLAE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFP+L +D L+ +G + K+ H +P LSL + D+ F I + Sbjct: 61 AFPEL---KDIATQLDSVGAPVTSGFGKIQHVVPMLSLGNAFEDSDVADFDRSIRNYLGF 117 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + FT EPKIDG +++RYEKG + AA RGDG +GE+V+A R I IP+ LS Sbjct: 118 GASQPLRFTAEPKIDGLSLSLRYEKGVLIQAATRGDGATGENVTANARTIADIPQQLS-G 176 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNF 238 PE++EVRGEVY+S DF ALN G K +ANPRNAA+G LR+L+ +ITR L F Sbjct: 177 APEVLEVRGEVYMSHEDFAALNARHTERGGKTFANPRNAAAGSLRQLD-AEITRLRPLRF 235 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + G S A+ Q ++++ LGF N + + ++++Y ++++ R+TL YD Sbjct: 236 FAYSWGDLSAPLAQTQTGAIERLHELGFQTNPLTQTCASVAEMIAHYRQIEAQRATLGYD 295 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD+ +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL Sbjct: 296 IDGVVYKVDDLALQGRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARL 355 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV +GG +++NATLHNEDYI+G D G+ +RGG++IR+GD V V RAG+VIPKV D+ + Sbjct: 356 TPVTVGGVVVSNATLHNEDYIRGRDNKGEEIRGGKEIRIGDWVQVYRAGDVIPKVADVDL 415 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 +R+ D Q F FP CP C S VR+ A RCTGG+ C AQ +E+LKHFVSR Sbjct: 416 TKRNGDEQTFDFPETCPECGSPAVREEGD------AVRRCTGGIICPAQAIEKLKHFVSR 469 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 AF+IEGLG +QL+ F+ DP IR P DI+TL++R TK++N G+GD S NL Sbjct: 470 KAFDIEGLGAKQLEMFYN--DPDLPIRTPVDIYTLEQRDLGQFTKLKNRPGWGDQSAANL 527 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN----NIIAHNNDD 594 + +I ++RNISL R IF+LGIRHVG A+ LA ++ S+++ A ++ +AH D Sbjct: 528 FAAITEKRNISLGRMIFALGIRHVGEVAAKDLALHFGSWEDLASAVDAARSAALAHRAAD 587 Query: 595 ---------------------------------------WLSLIRVPLVGDIIAQAIVEF 615 W LI + +G + ++ + Sbjct: 588 LAEDQERERASSEGRRAKIKETREAALSVLELHRTAREAWEDLIGIDGIGATVGLSLSDA 647 Query: 616 YQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 N + ++ L+ ++ +P+ E S + +VFTG L+K+ R +A+ Sbjct: 648 LANMQERAVIDDLVAQLNISAPAAPSQE----SPVAGLTVVFTGKLEKMTRDEAKARAES 703 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 LGA VS +S+KTDI++ G GSK +KA +LG++I++E+ +L Sbjct: 704 LGAKVSGSVSKKTDILVAGPGAGSKEKKALELGIRILDEDGWL 746 >gi|114767408|ref|ZP_01446210.1| DNA ligase, NAD-dependent [Pelagibaca bermudensis HTCC2601] gi|114540493|gb|EAU43572.1| DNA ligase, NAD-dependent [Roseovarius sp. HTCC2601] Length = 757 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 306/758 (40%), Positives = 452/758 (59%), Gaps = 61/758 (8%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +EALS +QAR EL L ++ + Y+ P I D++YDALKRR AI FP+L Sbjct: 13 IDVEALSEDQARAELERLAGLLAQANLAYHTEDAPEISDADYDALKRRNVAIEERFPELK 72 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R + P+ ++G + K+ H+ +SL ++ +++R F I R+ +D + Sbjct: 73 REDSPS---EQVGAALAEGFGKIRHAQRMMSLSNAFDDDEVRDFDRGIRRYLGLAEDAPL 129 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG +++RYE G + AA RGDG +GE+V+A R I IP+ L PE++E Sbjct: 130 PFTAEPKIDGLSLSLRYENGALIQAATRGDGATGENVTANARTIDDIPQQLE-GAPELLE 188 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLG 244 VRGEVY+S DF ALN+ A G KP+ANPRNAA+G LR+L+P +ITR L FF + G Sbjct: 189 VRGEVYMSHADFEALNERQEARGGKPFANPRNAAAGSLRQLDP-EITRARPLKFFAYAWG 247 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S A+ Q + ++++ LGF N R + ++ +Y +++ R+TL YDIDG+VY Sbjct: 248 ELSAPLAETQMDAIERLAQLGFQTNPLTRLCDGPQEMLDHYAQIEEQRATLGYDIDGVVY 307 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +G Sbjct: 308 KVNDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVG 367 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYI G DASG +R G+DIRVGD V V RAG+VIPK+ D+ +++R Sbjct: 368 GVVVSNATLHNEDYIAGRDASGNPIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSKRPDG 427 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+P++FP CP C S +R+ A RC+GGL C AQ +E++KHFVSR AF+IE Sbjct: 428 AEPYAFPETCPECGSEAIREEGD------AVRRCSGGLICPAQAVEKMKHFVSRSAFDIE 481 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +Q++ F++ I PA+IFTL+ R + +++N G+G+ S NL+D+I++ Sbjct: 482 GLGAKQVEQFYRD----GWISEPAEIFTLRERYGSGLQQLKNREGWGEKSANNLFDAIDE 537 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-------------------AQEIN 585 +R I L R +FSLGIRHVG +A LA++YLS+ A E Sbjct: 538 KRKIELGRVLFSLGIRHVGEVVANDLARHYLSWSAMIAAIDAARPAAERYRRAEQAVEAE 597 Query: 586 NIIAHNND-------------------------DWLSLIRVPLVGDIIAQAIVEFYQNPR 620 + A + W L+ V +G +A ++V P Sbjct: 598 RVAAKSEGRRARLKEIRDAAWAEDPAVSTEARAAWDDLVGVDGIGQTVAVSLVTSMGQPT 657 Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 +++ L+ ++ S + K +VFTG+L+K+ R +A+ LGA VS Sbjct: 658 ERASIDRLVAQLDIQDAERPATDGSPVAGKTVVFTGSLEKMTRAEAKARAEALGAKVSGS 717 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S+KTDI++ G GSK KA++LGV++M+E+ +L L+ Sbjct: 718 VSKKTDIVVAGPGAGSKEAKARELGVELMDEDAWLALI 755 >gi|259416760|ref|ZP_05740680.1| DNA ligase, NAD-dependent [Silicibacter sp. TrichCH4B] gi|259348199|gb|EEW59976.1| DNA ligase, NAD-dependent [Silicibacter sp. TrichCH4B] Length = 739 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 301/754 (39%), Positives = 437/754 (57%), Gaps = 61/754 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++ ARKE +L+ +I D Y+Q P + D+EYD LKRR A+A AFP+LA + Sbjct: 1 MNVTDARKEFEALQTKIEAADLDYHQKDAPTLSDAEYDRLKRRYLALAEAFPELA---EE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + +G K+ H++ +SL + +D+ F + R+ D + FT E Sbjct: 58 GTRVESVGAPAASGFGKIAHAVRMMSLGNAFEDQDVEDFAAGLRRYLGLSSDAPLAFTAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++RYE G V AA RGDG GE+V+ R I IP+ ++ P ++EVRGEV Sbjct: 118 PKIDGLSLSLRYENGTLVQAATRGDGAVGENVTENARTIEDIPQQIT-GAPAVLEVRGEV 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEI 249 Y+S DF ALN G K +ANPRNAA+G LR+L+ +ITR L FF + G+ SE Sbjct: 177 YMSHADFEALNARHAETGGKIFANPRNAAAGSLRQLD-AEITRARPLRFFAYSWGELSEP 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A+ Q + +++ + LGF N R T ++++Y+ ++ R+ L YDIDG+VYKV++ Sbjct: 236 LAETQIDAIERFKSLGFQTNPLTRCCQTIAELLTHYHSIEEQRADLGYDIDGVVYKVNDL 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL+PV +GG +++ Sbjct: 296 ALQERLGFRSTTPRWAIAHKFPAELAWTRLDGIDIQVGRTGALSPVARLQPVTVGGVVVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNEDYI GLD+ G +R G+DIRVGD V + RAG+VIPKV D+ +N R A+ ++ Sbjct: 356 NATLHNEDYIAGLDSKGATIRDGKDIRVGDWVQIYRAGDVIPKVADVDLNRRPDGAEVYA 415 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP C S VR+ A RC+GGL C AQ +E+LKHFVSR AF+IEGLG + Sbjct: 416 FPTHCPRCNSPAVREEGD------AVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAK 469 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 Q++ F I+ PADIF L+ R + +++N G+GD S T L+ +I+ +R I Sbjct: 470 QVEQFHSDG----WIKEPADIFELKERYGSGMQQLKNREGWGDKSATALFAAIDDKRRIE 525 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN----NIIAHNNDD----------- 594 R IF LGIRHVG A+ LA ++ ++ A+ + +AH D Sbjct: 526 FARLIFGLGIRHVGEVAAKDLALHFRTWAVLAEAADLARPAALAHRAADEAELLERQVAQ 585 Query: 595 ----------------------------WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 W LI V +G +A ++ + + NP A + Sbjct: 586 AEERRARISEVRKAAIAACEVAPDAQAAWDDLISVDGLGPTVALSLSDAFANPEERAAFD 645 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 L+ + I S + K +VFTGTL+K+ R +A+ LGA VS +S+KTD Sbjct: 646 RLIAHLE-VIEPDAPTEDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTD 704 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 I++ G GSK KA +LGV+ M+E+Q+L L+ Q Sbjct: 705 ILVAGPGAGSKATKAAELGVRTMDEDQWLDLIGQ 738 >gi|260426307|ref|ZP_05780286.1| DNA ligase, NAD-dependent [Citreicella sp. SE45] gi|260420799|gb|EEX14050.1| DNA ligase, NAD-dependent [Citreicella sp. SE45] Length = 754 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 310/760 (40%), Positives = 451/760 (59%), Gaps = 64/760 (8%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +EAL+ QAR EL+ L + ++ + Y+ P I D++YDALK R AI FP+L Sbjct: 9 IEVEALTETQARDELARLAEVLAQANRAYHTEDAPEISDADYDALKLRNIAIEERFPELK 68 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R + P+ ++G + KV HS +SL + +++ F I R+ DD + Sbjct: 69 REDSPS---EQVGAPLAEGFAKVRHSQRMMSLANAFADDEVTDFDRGIRRYLGLADDARL 125 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG +++RYE G+ V AA RGDG GE+V+A R I IP L PE++E Sbjct: 126 PFTAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDDIPATLE-GAPEVLE 184 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLG 244 VRGEVY+S DF ALN+ A G K +ANPRNAA+G LR+L+ ITR L FF + G Sbjct: 185 VRGEVYMSHEDFAALNERQEARGGKRFANPRNAAAGSLRQLDAA-ITRERPLRFFAYAWG 243 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + SE A Q ++++ LGF N R + ++++Y ++++ R+TL YDIDG+VY Sbjct: 244 EVSEPLATTQMGAIERLEALGFQTNPLTRLCDGPQEMLAHYAQIEAQRATLGYDIDGVVY 303 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD+ +LQ++LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +G Sbjct: 304 KVDDLALQQRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVG 363 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYI G DASG +R G+DIRVGD V V RAG+VIPKV D+ +++R + Sbjct: 364 GVVVSNATLHNEDYIAGRDASGNPIRDGKDIRVGDWVQVYRAGDVIPKVADVDLDKRPEE 423 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+P++FP CP C S +R+ A RCTGGL C AQ +E+LKHFVSR AF+IE Sbjct: 424 AEPYAFPQTCPECGSEAIREEGD------AVRRCTGGLVCPAQAVEKLKHFVSRAAFDIE 477 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +Q++ F + I PA+IFTL+ R + +++N G+G+ S NL+D+I++ Sbjct: 478 GLGAKQVEQFHRD----GWISEPAEIFTLRTRYGSGIQQLKNREGWGEKSAQNLFDAIDE 533 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN------------------ 586 RR I L R IFSLGIRHVG +A LA++Y S+ + ++ Sbjct: 534 RRTIGLGRVIFSLGIRHVGEVVANDLARHYASWDKLIEAVDAARPAAERYRQAETAVEAE 593 Query: 587 --------------------------IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 + A W L+ + +G +A ++V Sbjct: 594 RKTAAAEGRRARLKETRDAAWEAEPPVSAGARAAWEDLVGIDGIGQTVAVSLVTSLGQTT 653 Query: 621 NICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 +V+ L+ E+ +I E+ ++ S + K +VFTG L+K+ R +A+ LGA VS Sbjct: 654 ERASVDRLIAELR-TIEAPERPLTDGSPVAGKTVVFTGALEKMTRAEAKARAEALGAKVS 712 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S+KTDI++ G GSK KA++LG+++M+E+ +L L+ Sbjct: 713 GSVSKKTDIVVAGPGAGSKEAKARELGIELMDEDAWLALI 752 >gi|294085891|ref|YP_003552651.1| DNA ligase (NAD+) [Candidatus Puniceispirillum marinum IMCC1322] gi|292665466|gb|ADE40567.1| DNA ligase (NAD+) [Candidatus Puniceispirillum marinum IMCC1322] Length = 696 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 300/710 (42%), Positives = 438/710 (61%), Gaps = 32/710 (4%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + A +EL+ L + I+YHD Y+ P I D++YD L R +A+ +FP+L R P Sbjct: 11 MSADDAAQELAYLAERIAYHDRKYHGEDAPDISDADYDMLVARNNALEASFPELIR---P 67 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G ++ S K+ H+ P LSL ++ ED+ F+TRI +F + + I FT E Sbjct: 68 DSPSQRVGTMVSGSFGKIRHAQPMLSLSNGFSAEDIADFVTRIRKFLSLAETDDIAFTAE 127 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++RYEKG V AA RGDG GEDV+A IR + IP+ L +P+I EVRGEV Sbjct: 128 PKIDGLSLSLRYEKGHLVQAATRGDGSEGEDVTANIRTVDAIPKTLPDTVPDIFEVRGEV 187 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+ + DFLALN + G K +ANPRNAA+G LR+ + + +R L FF + +G+ S Sbjct: 188 YMDRKDFLALNADQERKGGKIFANPRNAAAGSLRQKDVSITGSRNLAFFAYSMGEASAPV 247 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A + L +R GF VN+ R + +++ Y+ + S R++L YDIDG+VYKVD Sbjct: 248 AATHTDFLAALRDFGFSVNDLSRHCLSLDDMLATYDAIGSQRASLDYDIDGVVYKVDRHD 307 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG+ AR+PRW ++HKF +QA T ++ IDIQ+GRTG LTPVARL PV +GG +++N Sbjct: 308 YQERLGQVARAPRWALAHKFPAEQAETTIIKIDIQVGRTGALTPVARLTPVTVGGVVVSN 367 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED I +DIR+GD V+++RAG+VIP+VV ++ +R D Q F+F Sbjct: 368 ATLHNEDEI-----------ARKDIRIGDHVIIQRAGDVIPQVVRVLDEKRPDDVQIFTF 416 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S +R G+ V RCTGGLAC AQ +E+LKHFVSRDAF+IEGLG +Q Sbjct: 417 PDRCPVCDSDAIR----PEGEAV--RRCTGGLACEAQLVEQLKHFVSRDAFDIEGLGARQ 470 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F + ++ PADIF L+ R+ K+ + G+G S+ NL+ SIN RR I L Sbjct: 471 IEQFLE----LGWVKTPADIFRLETRRD----KLATLDGYGAKSLDNLFASINARRTIGL 522 Query: 551 ERFIFSLGIRHVGAEIARSLAKYY--LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 ERFI++LGIR VG +R LA +Y L A + N + + +L+ + +GD + Sbjct: 523 ERFIYALGIRQVGQATSRLLALHYGDLDMMMSALDPENTESEHEIAIAALVDIDQIGDAM 582 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A I F+ + + V L E+S + + S + K +VFTGTL ++ R +A+ Sbjct: 583 AADICRFFGDTAHRNIVNDLASELS-ILPPERPSEDSAVSGKTVVFTGTLARMSRAEAKA 641 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA VS +S KTD +I G + GSK KA +LGV +++E+++ L+ Sbjct: 642 KAEALGAKVSGSVSAKTDYLIAGADAGSKARKAAELGVTVLSEDEWRALI 691 >gi|163760776|ref|ZP_02167856.1| DNA ligase, NAD-dependent [Hoeflea phototrophica DFL-43] gi|162282098|gb|EDQ32389.1| DNA ligase, NAD-dependent [Hoeflea phototrophica DFL-43] Length = 739 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 298/716 (41%), Positives = 440/716 (61%), Gaps = 25/716 (3%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PIEALS +A+ EL L EI+ HD+ Y++ PI+ D+EYDA KRR AI FP L Sbjct: 43 PIEALSEAEAKAELDRLAAEIARHDEAYHRKDAPIVSDAEYDAFKRRNLAIEERFPHLRL 102 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++ P+ K+G + K+TH + LSLE ++ ED R F+ R+ RF + + Sbjct: 103 ADSPS---LKVGAPVAEGFGKITHKVAMLSLENAFSDEDARDFVNRVKRFLNLTPFDELA 159 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIE 186 T EPKIDG +++RYE G V AA RGDG +GE+V+A R I IP L+ ++PE+IE Sbjct: 160 LTAEPKIDGLSLSLRYENGTLVSAATRGDGATGENVTANARTISDIPHQLAGEDVPEVIE 219 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY++K DF+ALN A G++ Y NPRN A+G LR+L+P R L FF + G+ Sbjct: 220 VRGEVYMTKADFMALNARQAAAGKQTYVNPRNTAAGSLRQLDPKITAERPLRFFAYAWGE 279 Query: 246 T-SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + Q EM+ GF VN + + + ++++Y +++ R+ LPYDIDG+VY Sbjct: 280 VLPSLPYPTQSEMVAAFARWGFAVNPLMARVTSAEALIAHYRLIEAERAGLPYDIDGVVY 339 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD+ LQ++LG +RSPRW I+HKF ++AST L IDIQ+GRTG LTPVARLEPV +G Sbjct: 340 KVDDLGLQRRLGFVSRSPRWAIAHKFPAEKASTLLTAIDIQVGRTGALTPVARLEPVTVG 399 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHN + I+ L +R+GD V ++RAG+VIP+V+ ++ + D Sbjct: 400 GVVVTNATLHNAEEIERL-----------GVRIGDTVQIQRAGDVIPQVLGVVSSPE--D 446 Query: 425 AQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 A F+FPS CP ++ V+R+ G RC+G AC Q+ E LKHFVSR AF+I Sbjct: 447 AVAFAFPSICPCDLKTPVIRE-ETAGGVEGVVRRCSGEFACPFQRKEHLKHFVSRKAFDI 505 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST-TKIENILGFGDVSVTNLYDSI 542 +GLG++Q++FF+ ED I PADIFTL+ R + + +++N G+GD S L+D+I Sbjct: 506 DGLGEKQIEFFY--EDKTLPINQPADIFTLKMRDEANGLQRLKNRDGYGDTSAQKLFDAI 563 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 +R ++LER IFSLGIRHVG + A++LA+ Y + I ++ + + Sbjct: 564 EAKREVALERLIFSLGIRHVGEQTAKTLARAYGDWTTLHAAALAIADGDSAAVEEMDALD 623 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G + +AI F+ NI V+ L+ +++ + + S + +VFTG+L+K+ Sbjct: 624 DIGPAVVEAIGRFFGEDHNIAMVDNLVSQLT-VLDAEKPAQDSPVAGLTVVFTGSLEKMT 682 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ +LGA V+ +S+KTDI++ G GSKL KAQ LGV+ M+E+ + L+ Sbjct: 683 RDEAKAMAERLGAKVAGSVSKKTDILVAGPGAGSKLTKAQGLGVRTMDEDGWFELV 738 >gi|149203841|ref|ZP_01880810.1| DNA ligase, NAD-dependent [Roseovarius sp. TM1035] gi|149142958|gb|EDM31000.1| DNA ligase, NAD-dependent [Roseovarius sp. TM1035] Length = 717 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 287/685 (41%), Positives = 420/685 (61%), Gaps = 15/685 (2%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 Y+ P I D+ YDALK R AI FP L R + + +++G KV HSI Sbjct: 44 YHTEDAPEITDAAYDALKARNAAIEARFPTLKRDDSAS---DQVGAAPLDGFAKVAHSIR 100 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL + ED+ +F +RI R+ DD + +T EPKIDG +++RY +G+ V AA R Sbjct: 101 MLSLGNAFEPEDVAEFDSRIRRYLGLPDDAPLAYTAEPKIDGLSLSLRYVQGRLVQAATR 160 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+V+A R I IP L+ PEI+EVRGEVY+S DF ALN K +A Sbjct: 161 GDGEVGENVTANARTITDIPESLT-GAPEILEVRGEVYMSHADFAALNARQAEKSDKQFA 219 Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+ R L FF + G+ S A+ Q + +++ LGF N Sbjct: 220 NPRNAAAGSLRQLDAKITAARPLRFFAYSWGEVSAPLAETQMGAIARLKALGFQTNPLTV 279 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 + ++ +Y ++ R+TL YDIDG+VYKVD+ LQ +LG R+ +PRW I+HKF + Sbjct: 280 LCDGVEALLEHYARIEQARATLGYDIDGVVYKVDDLGLQARLGFRSTTPRWAIAHKFPAE 339 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 A TRL IDIQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G D+ G+V+RGG+ Sbjct: 340 LAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAGRDSKGEVIRGGK 399 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIRVGD V V RAG+VIPKV D+ +++R A P+ FP+ CP C S VR+ Sbjct: 400 DIRVGDWVQVYRAGDVIPKVADVDLSKRAEGATPYVFPATCPECGSDAVREEGD------ 453 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RC GGL C AQ +E+LKHFVSR AF+IEGLG +Q++ F++ I+ PADIF L Sbjct: 454 AVRRCVGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQVEQFYRDG----WIKEPADIFLL 509 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 Q R + +++N G+G+ S NL+++I ++R I R +F+LGIRHVG + + +A+ Sbjct: 510 QERYGSGLQQLKNREGWGEKSAKNLFEAIEEKRKIPFGRLLFALGIRHVGEQASTLIARN 569 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 Y ++ F ++ + +W L+ + VG ++A+A+V + P +++ L + ++ Sbjct: 570 YGTWDEFIAAMDGAKDYEGPEWERLLGIDGVGTVMARALVGAFAEPHERGSIDRLTEYLT 629 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 + S + K +VFTG+L+K+ R +A+ LGA V+ +S KTD+++ G Sbjct: 630 VQEAARPRTDGSPVAGKTVVFTGSLEKMTRAEAKARAEGLGAKVAGSVSAKTDLLVAGPG 689 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLL 718 GSK +KAQ LG++ ++E+ +L L+ Sbjct: 690 AGSKAKKAQDLGIETIDEDGWLTLI 714 >gi|23013561|ref|ZP_00053441.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Magnetospirillum magnetotacticum MS-1] Length = 696 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 295/725 (40%), Positives = 444/725 (61%), Gaps = 43/725 (5%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 R +PI+ L+ +AR E + L +++ D+ Y+ P++ D YD KRR I FP Sbjct: 3 RPPVPIDVLTPFEARIEHAELVEKLVSWDEAYHGQDAPLVPDDVYDGAKRRLSGIEARFP 62 Query: 64 DLARSEDPNGPL-NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 +LA P+ +K+G + K+ H++P LSL+ ++ ED+ +F ++ RF D Sbjct: 63 ELAA----KSPIKDKVGAAPSEGFGKLVHALPMLSLDNAFSPEDVAEFDAKVRRFLGLSD 118 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP--TIPRVLSLN 180 + + + EPKIDG I +RYE G FV AA RGDG GEDV+ + P +PR L + Sbjct: 119 EAPLAYVAEPKIDGLSINLRYENGNFVSAATRGDGAEGEDVTRNLDTFPETQLPRRLGPD 178 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P +IE+RGEVY++K DFLALN + G KP+ANPRNAA+G LR+L+P +R L+ F Sbjct: 179 APAVIEIRGEVYMTKADFLALNQRQESAGEKPFANPRNAAAGSLRQLDPKITASRPLSLF 238 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + +G+ S + A + L++++ GF VN +R+ + G+++ Y + R+ LPYDI Sbjct: 239 AYAMGEASSLPAASHWGYLERLKAWGFVVNPLIRRCDGVAGLLAAYGSLGEARAALPYDI 298 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD+ LQK+LG +RSPRW I+HKF +QA+T L IDIQ+GRTG LTPVARL Sbjct: 299 DGIVYKVDDLELQKRLGFVSRSPRWAIAHKFPAEQATTLLEAIDIQVGRTGALTPVARLT 358 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PVN+GG +++NATLHNED I +D+RVGD V+V+RAG+VIP++V ++ Sbjct: 359 PVNVGGVVVSNATLHNEDEI-----------ARKDVRVGDTVIVQRAGDVIPQIVGVVPG 407 Query: 420 E-RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R P PF +P CP+C + VR G+++ RCTGGL C AQ ERLKHFVSR Sbjct: 408 KPRGP--TPFVYPDTCPVCGAHAVR----PEGEVI--RRCTGGLTCDAQAKERLKHFVSR 459 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +AF+IEGLG + ++F + D + +R PA IFTL+ Q K+EN G+G S L Sbjct: 460 NAFDIEGLGDKNIEFLW---DKGW-VRKPAHIFTLEAANQDRLQKLENFEGWGKRSTEKL 515 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 ++SI R ++ LERFIF+LGIR +G A+ LA++Y +Q + + + D L+ Sbjct: 516 FESIRSRASMGLERFIFALGIRQIGEATAKRLARHYGGFQAW----RDAMTEEGKDELTS 571 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLV 653 I +G +A +++F++ N A++ L++ + G + + +S I K +V Sbjct: 572 IED--IGPSVAADLLDFFKEEHNRAALDDLVRAMEALGGGVQDAKRIEAFASPIAGKAVV 629 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTGTL + R +A+ LGA V +S+KTD ++VG + GSK +A +LG+ I++E++ Sbjct: 630 FTGTLVTMTRPEAKARAEALGAKVVGSVSKKTDYVVVGADAGSKATEAAKLGLTILSEQE 689 Query: 714 FLFLL 718 +L L+ Sbjct: 690 WLDLI 694 >gi|144899097|emb|CAM75961.1| NAD-dependent DNA ligase [Magnetospirillum gryphiswaldense MSR-1] Length = 693 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 295/717 (41%), Positives = 434/717 (60%), Gaps = 32/717 (4%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I I+AL+ +AR E S+L +++ D Y+Q P + D+ YDA K R AI FP+LA Sbjct: 3 IEIDALTPFEARIEASALREKLIRWDLAYHQADAPEVDDATYDAAKLRLLAIEARFPELA 62 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P KIG KV H +P LSL+ ++ +D+R+F RI RF D I Sbjct: 63 ----AGSPTAKIGAPAAEGFGKVRHGVPMLSLDNAFSEDDVREFEGRIRRFLALPPDQII 118 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI---PTIPRVLSLNIPE 183 F EPKIDG I++RYE G+FV AA RGDG GEDV+A IR + IP + P+ Sbjct: 119 AFVAEPKIDGLSISLRYENGQFVRAATRGDGSEGEDVTANIRTLIRRGKIPERFD-DAPD 177 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242 +IEVRGE+Y++K DFLALN A G KP+ANPRNAA+G LR+LNP +R L+ F + Sbjct: 178 LIEVRGEIYMTKADFLALNQRQEAAGDKPFANPRNAAAGSLRQLNPRVTASRELSTFFYA 237 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 LG+ + I +E L ++ GFP + N ++ Y ++ +R++L +DIDG Sbjct: 238 LGEHTTIKQNTHFEFLNQLTKWGFPCALQYISLYNNIDEMIQGYKNLQDLRASLDFDIDG 297 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 VYKV+ F Q++LG +RSPRW I+HKF +QA+T L I+IQ+GRTG LTPVA L PV Sbjct: 298 YVYKVNRFDWQQRLGFVSRSPRWAIAHKFPAEQATTLLERIEIQVGRTGALTPVAHLTPV 357 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 N+GG +++ A+LHNED +++R G +R GD V+++RAG+VIP+VV +++++ Sbjct: 358 NVGGVVVSRASLHNED---------EIIRKG--VREGDTVIIQRAGDVIPQVVGVVMDKP 406 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 A F FP CP+C S VR TG V RC+GGLAC AQ ERL+HFVSR+AF Sbjct: 407 R-GAADFLFPDTCPVCGSHAVR-----TGDEVI-RRCSGGLACKAQVKERLRHFVSRNAF 459 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG + +DF + E I PADIF L+ +++N G+G+ V L+ + Sbjct: 460 DIEGLGDENIDFLCEGE----WINKPADIFRLEAANAGRLQRLQNYKGWGEKKVAKLFAA 515 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I RR I+LER I++LGIR VG A+ LA++Y S+ + + + + ND + LI + Sbjct: 516 ITARRTIALERLIYALGIRQVGEATAKRLARHYGSFAVWRESMLAAVPRENDSYHDLISI 575 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G +A I+ F+ N+ A++ L +++ + + + +S + K +VFTG L + Sbjct: 576 EDIGPAVANDILAFFAEDHNVAALDDLAAQLTINDAQKIEAGNSPVSGKSVVFTGELVAM 635 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V +S+KTD ++ G GSKL +A++LG+ +++E+Q+L L+ Sbjct: 636 TRAEAKAKAEMLGAKVVGSVSKKTDYVVAGPGAGSKLAEAEKLGLTVLSEQQWLELI 692 >gi|304321380|ref|YP_003855023.1| NAD-dependent DNA ligase [Parvularcula bermudensis HTCC2503] gi|303300282|gb|ADM09881.1| NAD-dependent DNA ligase [Parvularcula bermudensis HTCC2503] Length = 727 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 289/744 (38%), Positives = 430/744 (57%), Gaps = 49/744 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E LS +A EL+ L E++ D Y+ + P++ D+ YDAL+RR +AI FP L R++ Sbjct: 8 EELSEAEAADELARLAHEMAAAD-IAYENADPVMTDAAYDALRRRNEAIEARFPHLRRAD 66 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ ++G + KV H++P LSL+ + ED+ +F+TR+ RF + ++ + T Sbjct: 67 SPS---LRVGTAPSGRFAKVRHALPMLSLDNAFADEDVDEFVTRVRRFLRLGEEEPLRLT 123 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 EPKIDG +RYE+GKFV RGDG GED++ + I IP L P I+EVRG Sbjct: 124 AEPKIDGLSANLRYEEGKFVLGTTRGDGTVGEDITRNLATIENIPARLE-GAPSILEVRG 182 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVY+ K F A+ND A G K +ANPRNAA+G LR+ +P+ R L FF + G+ S Sbjct: 183 EVYLGKEAFAAMNDAFAARGEKVFANPRNAAAGSLRQKDPSITADRPLRFFAYAWGEVSS 242 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q E ++++ LGF N + T +++Y ++++R+ L YD+DG+VYKVD Sbjct: 243 PLGETQTEAVKRLSDLGFCTNELMGTFATAKEAIAHYRHIETLRAALDYDVDGVVYKVDR 302 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q++LG +RSPRW I+HKF+ ++A T L IDIQ+GRTG LTP ARL PV +GG ++ Sbjct: 303 LDWQERLGAVSRSPRWAIAHKFSAEKAETVLERIDIQVGRTGALTPTARLRPVTVGGVVV 362 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHNED I L D+R GD V V+RAG+VIP+++ ++ +R +AQP+ Sbjct: 363 SNATLHNEDEIARL-----------DVREGDSVCVQRAGDVIPQILSVLTEKRPKEAQPY 411 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S VR+LN KTG+ RCTGGL C AQ +ERLKHFVSR A +I+GLG Sbjct: 412 RFPTHCPVCGSEAVRELNEKTGERDVVRRCTGGLICPAQGIERLKHFVSRKAMDIDGLGA 471 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV--------------- 533 +Q++ F+ I PADIFTL R T +++G D+ Sbjct: 472 RQIEDFYGRH----MIAEPADIFTLPARYHQGTF---DVIGTSDLNSYKRLAPTATKPAR 524 Query: 534 ---------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 S+ NL+ +I R+ L R IF+LGIRH+G R +A+ + F + Sbjct: 525 WTKEITNRKSLDNLFAAIEAARSRPLGRVIFALGIRHIGEMNGRLIAQGVETLSGFCRLG 584 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + + + ++ + +GD + A+ F+ PRN A++ L E+SP+ Sbjct: 585 DRLAKGDEAARQEMLAIDGIGDTVTDALAAFFHEPRNREALDRLAAEISPAAPPKPAQ-D 643 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 S K +VFTG L+++ R +A+ T LGA VS +S KTD ++ G GSKL KA+ L Sbjct: 644 SRFSGKTVVFTGKLERMSRDEAKARATSLGAKVSGSISAKTDYLVAGPGAGSKLTKAKDL 703 Query: 705 GVKIMNEEQFLFLLQQYNTTLRIH 728 GV I+ E+++L + ++++ Sbjct: 704 GVDILTEDEWLEFISDEAVSVQLE 727 >gi|170739961|ref|YP_001768616.1| DNA ligase, NAD-dependent [Methylobacterium sp. 4-46] gi|254781369|sp|B0UQ51|DNLJ_METS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|168194235|gb|ACA16182.1| DNA ligase, NAD-dependent [Methylobacterium sp. 4-46] Length = 827 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 307/840 (36%), Positives = 455/840 (54%), Gaps = 136/840 (16%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + P+E ++ E+AR +L EI+ HD Y+ PII D+ YD+L+RR +AI Sbjct: 1 MAAQTTRPVEEITAEEARAAHEALSAEIAEHDRRYHGEDAPIISDAAYDSLRRRLEAIEE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FPDLA + + +G + + KV H++P LSL + E++ +F+ R+ RF Sbjct: 61 RFPDLAGTGAASA---SVGAKASDKFAKVRHAVPMLSLGNAFADEEIEEFVERVRRFLGL 117 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSL 179 S+ T EPKIDG +++RYE G+ V AA RGDG GEDV+A +R I +P R+ Sbjct: 118 PASESLAVTAEPKIDGLSLSLRYEGGRLVTAATRGDGEVGEDVTANVRTIREVPERLAGP 177 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 ++PEI EVRGEVY+S DF A+N G+ +ANPRNAA+G LR+L+P+ +R L F Sbjct: 178 DVPEICEVRGEVYLSHADFAAINARQEEAGKPLFANPRNAAAGSLRQLDPSITASRPLRF 237 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + G+ S A+ Q ++ R G PVN + + ++++Y +++ R+ L YD Sbjct: 238 FAYAAGEMSTWPAETQSGLIAAFRRFGLPVNPRTTRCTSVAEMLAHYRAIETERADLGYD 297 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD F+LQ++LG AR+PRW ++HKF ++A T + I+I +GRTG L P+ARL Sbjct: 298 IDGVVYKVDSFALQRRLGFVARAPRWALAHKFPAQRAVTTIEAIEINVGRTGSLNPLARL 357 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRG------------------GRDIRVGDR 400 PV +GG +++NATLHNEDY++G+DA G +R G D+RVGD Sbjct: 358 RPVTVGGVVVSNATLHNEDYVRGIDADGTPIRSGINIWDGFALRTDVDLSRGSDVRVGDT 417 Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG 460 V+V RAG+VIPKV D+++ R DA P+ FP CP C S VR NP+TGKL + RCTG Sbjct: 418 VVVLRAGDVIPKVADVVLERRPADAVPYRFPEICPACGSHAVRSYNPRTGKLDSVRRCTG 477 Query: 461 GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ------ 514 GL C AQ ERLKHFVSR+A +IEG G+ + F+ A +R PAD+F L Sbjct: 478 GLICPAQGQERLKHFVSRNALDIEGFGETSITTLFE----AGLVRQPADLFRLDFAPLKA 533 Query: 515 ----RRQQTSTTKIENILGFG---------------DVSVTNLYDSINKRRNISLERFIF 555 RRQ S E L G D ++ NL ++ RR + L RFIF Sbjct: 534 AIVARRQALSA---ERALASGKAPEARKTKAKASEEDKAIRNLLAAVEARRVVPLNRFIF 590 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN-NDDWLSLIRVPLVG--------- 605 +LGI VG A++LAK++ + + AH DW+ L + VG Sbjct: 591 ALGIEQVGEATAKALAKHFPDMPALMEGVRAAAAHQPGPDWVGLAALNRVGPTTRERLLA 650 Query: 606 -------DIIA------------QAIVEFYQNPR-------------------------- 620 D++A +A++E Y +P Sbjct: 651 AAEAGETDLLAEGTVARLSAAQKEALLEAYGSPEGVRAAVMRACRQRPGDAYRHLADDSE 710 Query: 621 -----------------NICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQ 659 N+ AVEALL +V R E+ ++ + +VFTG+L+ Sbjct: 711 IGAVTTASLIQFFSEAHNVAAVEALLAQV-----RTERAAPPAAAAAFSGRTVVFTGSLE 765 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ R +A+ +LGA VS +S KTD+++ G G+KL+ A++ GV++++E ++L +++ Sbjct: 766 RMTRSEAKATAERLGAKVSGSVSAKTDLVVAGPGAGTKLKDAEKHGVRVISEAEWLAMVE 825 >gi|83312957|ref|YP_423221.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1] gi|123726860|sp|Q2W0G3|DNLJ_MAGMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|82947798|dbj|BAE52662.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1] Length = 698 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 293/722 (40%), Positives = 440/722 (60%), Gaps = 39/722 (5%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +IP+EAL+ +AR E + L + I+ D+ Y+ P + D YD KRR I FP+L Sbjct: 1 MIPVEALTPFEARIEHAELVETIARWDEAYHAKDAPEVPDDVYDGAKRRLARIEGRFPEL 60 Query: 66 ARSEDPNGPL-NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 A P+ +K+G + K+ H++P LSL+ + ED+ +F ++ RF D+ Sbjct: 61 A----AKSPIRDKVGAAPSEGFGKLVHAVPMLSLDNAFAPEDVAEFDAKVRRFLGLGDEA 116 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIP 182 + + EPKIDG I +RYE G+FV AA RGDG GEDV+ + P +PR L + P Sbjct: 117 PLAYVAEPKIDGLSINLRYEGGRFVSAATRGDGAEGEDVTRNLETFPATQLPRTLGPDAP 176 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH 241 +IE+RGEVY++K DFLALN A G K +ANPRNAA+G LR+L+P +R L+ F + Sbjct: 177 AVIEIRGEVYMTKADFLALNQRQEAAGEKLFANPRNAAAGSLRQLDPKVTASRPLSLFAY 236 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 +G+ S A +E L++++ GF VN +R+ + G++S Y + R+TL YDIDG Sbjct: 237 AMGEASAPPAASHWEYLERLKAWGFVVNPLIRRCDGVAGLLSAYESLGEARATLAYDIDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD+ LQ++LG +RSPRW I+HKF +QA+T L IDIQ+GRTG LTPVARL PV Sbjct: 297 IVYKVDDIELQRRLGFVSRSPRWAIAHKFPAEQATTLLEAIDIQVGRTGALTPVARLTPV 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 N+GG +++NATLHNED I +D+R+GD V+V+RAG+VIP++V ++ + Sbjct: 357 NVGGVVVSNATLHNEDEI-----------ARKDVRIGDTVIVQRAGDVIPQIVGVVPGKP 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 A PF +P CP+C + VR G+++ RCTGGL C AQ ERLKHFVSR+AF Sbjct: 406 R-GAVPFVYPETCPVCGAHAVR----PEGEVI--RRCTGGLTCEAQAKERLKHFVSRNAF 458 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGDVSVTNLYD 540 +IEGLG++ ++F ++ +R PADIF L+ R ++EN G+G S L++ Sbjct: 459 DIEGLGEKNIEFLWEKG----WVRGPADIFRLKARNDAELLQRLENFEGWGKRSTEKLFE 514 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 SI R + LERFIF+LGIR +G A+ LA++Y S+ + ++A + L Sbjct: 515 SIKTRSAMGLERFIFALGIRQIGEATAKRLARHYGSFGAWRA---AMLAGTEEARAELTS 571 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIENKKLVFT 655 + +G +A +++F+ N+ AV+ L+ ++ G E ++ +S + K +VFT Sbjct: 572 IEDIGPSVAGDLLDFFSEEHNVQAVDDLVAAMAALDGAVEDAKVIESSASPVAGKAVVFT 631 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R +A+ LGA V +S+KTD ++VG + GSK +A +LG+ ++E+++L Sbjct: 632 GTLVTMTRPEAKARAEALGAKVVGSVSKKTDYVVVGADAGSKAAEAVKLGIATLSEQEWL 691 Query: 716 FL 717 L Sbjct: 692 AL 693 >gi|126737638|ref|ZP_01753368.1| DNA ligase, NAD-dependent [Roseobacter sp. SK209-2-6] gi|126721031|gb|EBA17735.1| DNA ligase, NAD-dependent [Roseobacter sp. SK209-2-6] Length = 749 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 304/756 (40%), Positives = 438/756 (57%), Gaps = 64/756 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PI LS +A++EL+ L+ I D ++ + I D YD KRR + FP L Sbjct: 4 PISDLSENEAQEELNELKLLIWSADRLHHTHDISEISDGAYDREKRRLKELVDTFPKLRP 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + L+ +G K++H+IP LSL + D+ F I + + D S+ Sbjct: 64 QAEK--ILDSVGAPAASGFGKISHAIPMLSLGNAFEDGDVADFTKGIRNYLGQSADQSLA 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT EPKIDG +++RYE G+ V+ A RGDG +GEDV+ R I IP+VL+ PEI+EV Sbjct: 122 FTAEPKIDGLSLSLRYENGRLVHGATRGDGSTGEDVTENARTIADIPQVLT-GAPEILEV 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGK 245 RGEVY+S DF LN G K +ANPRNAA+G LR+L+ ++TR L FF + G+ Sbjct: 181 RGEVYMSHADFATLNARQEEQGGKSFANPRNAAAGSLRQLD-AEVTRARPLRFFAYSWGE 239 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE AK Q+E ++++ LGF N + ++++Y ++ R+TL YDIDG+VYK Sbjct: 240 LSEPLAKTQFEAIERLSVLGFQTNELTALCTSVEEMIAHYRRIEEQRATLGYDIDGVVYK 299 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ +LQ +LG RA +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 300 VNDMALQARLGFRATTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG 359 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYI+G D G+ +RGG++IRVGD V + RAG+VIPKV D+ + +R + Sbjct: 360 VVVSNATLHNEDYIQGRDNKGEEIRGGKEIRVGDWVQIYRAGDVIPKVADVDIRKRTGNE 419 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 PF+FP+ CP C S VR+ A RCTGGL C AQ +E+LKHFVSR AF+I+G Sbjct: 420 IPFAFPTTCPECGSEAVREEGD------AVRRCTGGLICPAQAIEKLKHFVSRKAFDIDG 473 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +QL+ FF ED IR P DI+ L++R + K++N G+G S NL+ +I ++ Sbjct: 474 LGAKQLEMFF--EDTDLPIRTPVDIYRLEQRDGENLAKLKNRHGWGAQSAENLFAAITQK 531 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ-------------------NFAQEIN- 585 R I L R IF LGIRHVG A+ LA ++ S+ + A+E Sbjct: 532 RRIPLGRMIFGLGIRHVGEVAAKDLALHFGSWADLAAAVDLAREAALAHRAADLAEEKER 591 Query: 586 -----------------------NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 + A + W LI + +G + ++ + N Sbjct: 592 QAAAAEGRRARIKETRDLEVSRLEVSASARESWEDLIGIDGIGATVGLSLSDALANVEER 651 Query: 623 CAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 ++AL+ E+ +P+ E S + K +VFTG L+K+ R +A+ LGA VS Sbjct: 652 SVIDALVHELEIEAPAAPAQE----SPVAGKTVVFTGKLEKMTRDEAKARAEALGAKVSG 707 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +S+KTDI++ G GSK +KAQ+LG++I++EE +L Sbjct: 708 SVSKKTDILVAGPGAGSKEKKAQELGIEILDEEGWL 743 >gi|114768813|ref|ZP_01446439.1| DNA ligase [alpha proteobacterium HTCC2255] gi|114549730|gb|EAU52611.1| DNA ligase [alpha proteobacterium HTCC2255] Length = 711 Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust. Identities = 287/720 (39%), Positives = 440/720 (61%), Gaps = 20/720 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E L QA KEL L + + + YY PI+ D+EYD LK+R I FP+L Sbjct: 6 PVEKLDKMQAEKELIRLNEILDRANSDYYSNDAPILSDAEYDTLKKRNLDIESRFPNLKL 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 N +KIG + + + K+ H++ LSL ++ +D+ F R+ + +D I Sbjct: 66 K---NSVSDKIGSKPSSTFKKIKHTVKMLSLANGFDEQDIIDFDQRVKKILGF-EDRVIS 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + EPKIDG ++++Y GK A RGDG GE+V+ I IP+ + N P I+E+ Sbjct: 122 YVAEPKIDGLSLSLKYIDGKLFQATTRGDGEVGENVTENAITIQNIPKYIH-NAPSILEI 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGEVY+S NDF LN + + K ++NPRNAA+G LR+L+ +R L F+ + G+ Sbjct: 181 RGEVYMSLNDFNELNIKQKNIDAKIFSNPRNAAAGSLRQLDSKVTASRPLKFYAYAWGEV 240 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S + QY + ++R GF N+ ++ ++S+Y+ + + R+ L YDIDG+VYKV Sbjct: 241 STPISDTQYNAIDRLRKFGFSTNDLTKKCYGPKELISHYDNISNKRADLGYDIDGVVYKV 300 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D S Q +LG R+ +PRW I+HKF + A T L I+IQ+GRTG L+PVARL+PVN+GG Sbjct: 301 DNLSYQDRLGFRSTTPRWAIAHKFPAEIAQTWLESIEIQVGRTGALSPVARLKPVNVGGV 360 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNEDYIKG D+ G ++RGG DIR GD V V RAG+VIPK+ D+ V++R ++ Sbjct: 361 IVSNATLHNEDYIKGKDSKGNIIRGGNDIREGDWVYVYRAGDVIPKISDVDVSKRISTSK 420 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P++FPSFCP C S R G VA RC GG+ C AQ ++ L HFVSR AF+I+GL Sbjct: 421 PYTFPSFCPECSSPSER----IEGDSVA--RCIGGITCPAQAVQGLAHFVSRGAFDIDGL 474 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ F++ ++ PADIF L+ R + ++EN G+G S NL+++I +R Sbjct: 475 GNKQIEQFYQ----LGWVKEPADIFKLKLRYENGIKRLENRDGWGQKSANNLFNAIESKR 530 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I L + +++LGIRHVG A L+K+Y S+ N + +N + W L+ + VG+ Sbjct: 531 TIPLNKMLYALGIRHVGETSATLLSKHYKSFDNLKKSMNEAKSLEGSSWSDLMSIDGVGE 590 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRH 664 I+A+A+V+ + NP ++ L++E+ I +N+ S +E +VFTG+L+ + R Sbjct: 591 ILAKAVVQIFNNPAQRQIIDNLVEEL--VIENEIENIVSGSPLEGMVVVFTGSLELMTRS 648 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A+ + GA VS +S+KTD+++ G GSK +KA +LGVK+++E ++L L+ N + Sbjct: 649 EAKISAEKFGAKVSGSVSKKTDLVVSGPGAGSKEKKAIELGVKVLSESEWLKLINLNNLS 708 >gi|254465633|ref|ZP_05079044.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium Y4I] gi|206686541|gb|EDZ47023.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium Y4I] Length = 750 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 301/755 (39%), Positives = 443/755 (58%), Gaps = 61/755 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + AL+ E AR E +LE ++ D Y+Q P I D+EYD+LK+R A+A AFPDLA Sbjct: 9 VTALTAEDARAEFLALEDQLRAADLAYHQADAPEISDAEYDSLKQRYRALAEAFPDLA-- 66 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 D L+ +G K+TH++ LSL + ED+ F + ++ + ++ + Sbjct: 67 -DAATHLDAVGAPAASGFGKITHAVRMLSLGNAFAEEDVTDFDRSVRKYLGLGGEAALGY 125 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE+GK V AA RGDG GE+V+A R I IP+ L+ PE++EVR Sbjct: 126 TAEPKIDGLSLSLRYEQGKLVQAATRGDGSVGENVTANARTISDIPQHLT-GAPEVLEVR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKT 246 GEVY+S DF ALN G K +ANPRNAA+G LR+L+ +ITR L FF + G+ Sbjct: 185 GEVYMSHADFEALNARHAERGGKIFANPRNAAAGSLRQLD-AEITRARPLRFFAYSWGEL 243 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S A+ Q E +++++ LGF N R + ++ +Y ++ R+TL YDIDG+VYKV Sbjct: 244 SAPLAETQMEAIERLQSLGFQTNPLTRLCTSVADMIDHYRSIEEQRATLGYDIDGVVYKV 303 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 304 NDLALQGRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGV 363 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNEDYI+G D+ G+ +RGG+DIR+GD V + RAG+VIPKV D+ +++R A+ Sbjct: 364 VVSNATLHNEDYIQGRDSKGEEIRGGKDIRIGDWVQIYRAGDVIPKVADVDLSKRPQHAE 423 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP C S R+ A RC+GGL C AQ +E+LKHFVSR AF+IEGL Sbjct: 424 PYQFPHTCPECGSPAEREEGD------AVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGL 477 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ F I+ PADIF LQ + +++N G+G+ S NL+ +I ++R Sbjct: 478 GAKQVEQFHSD----GWIKEPADIFDLQANYGSGLQQLKNREGWGEKSADNLFAAIEEKR 533 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-------------------------- 580 I L + IF+LGIRH G R LA +Y +Q Sbjct: 534 TIPLAKLIFALGIRHAGEVAGRDLALHYRDWQGMAAALDAARPAALAHRAADEAEEAERQ 593 Query: 581 --AQE---------------INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 A+E + A W LI V +G ++ ++ + + NP Sbjct: 594 SAAEEGRRARISETRAAAIAACEVPAEAASAWADLIGVDGIGAVLGLSLSDAFANPEERA 653 Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 A++ L+ +++ + S + K +VFTGTL+K+ R +A+ LGA VS +S+ Sbjct: 654 AIDRLVAKLT-VVPPDAPAADSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSK 712 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 KTDI++ G GSK +KA +LG++ ++E+ +L L+ Sbjct: 713 KTDILVAGPGAGSKAKKAAELGIQTLDEDGWLELI 747 >gi|126729669|ref|ZP_01745482.1| DNA ligase, NAD-dependent [Sagittula stellata E-37] gi|126709788|gb|EBA08841.1| DNA ligase, NAD-dependent [Sagittula stellata E-37] Length = 714 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 295/709 (41%), Positives = 437/709 (61%), Gaps = 17/709 (2%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +QAR+EL +L + + Y+ P + D+EYD LKRR I FP L ++ P Sbjct: 19 MTEDQAREELRALSDILGQANRAYHAEDAPELTDAEYDRLKRRNAEIEARFPQLKLADSP 78 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++G KV H + LSL ++ +D+R F I R+ D + FT E Sbjct: 79 S---EQVGAAPVDGFSKVRHEVRMLSLANAFDDDDIRDFDDSIRRYLGLGTDAPLAFTAE 135 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG + +RYE GK V AA RGDG GEDV+A R I IP L+ PE++EVRGEV Sbjct: 136 PKIDGLSLALRYENGKLVRAATRGDGSEGEDVTANARTIDDIPTDLT-GAPEVLEVRGEV 194 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+S DF ALN+ A G K +ANPRNAA+G LR+L+ IT R L FF + G S+ Sbjct: 195 YMSHADFEALNERQTARGGKTFANPRNAAAGSLRQLD-AKITAERPLKFFAYAWGVLSDP 253 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A+ Q + ++ LGF N + ++++Y ++++ R+TL YDIDG+VYKV++ Sbjct: 254 LAETQKGAIDRLNALGFQTNPLTALCDGPEEMLNHYRKVEAQRATLGYDIDGVVYKVNDL 313 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG +++ Sbjct: 314 ALQERLGFRSTTPRWAIAHKFPAELAWTRLESIDIQVGRTGALSPVARLTPVTVGGVVVS 373 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNEDYI G D+SG +RGG+DIR+GD V V RAG+VIPKV D+ +++R DAQP+ Sbjct: 374 NATLHNEDYIAGRDSSGNEIRGGKDIRIGDWVQVYRAGDVIPKVADVDLSQRPEDAQPYV 433 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP C S +R+ A RC+GGL C AQ +E+LKHFV R AF+IEGLG + Sbjct: 434 FPTKCPECGSDAIREEGD------AVRRCSGGLICPAQAVEKLKHFVGRSAFDIEGLGAK 487 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 Q++ F+ IR P DIFTL+ R + +++N G+G+ S NL+ +I++RR+I Sbjct: 488 QVEQFYAD----GWIREPVDIFTLRDRYGSGIQQLKNREGWGEKSALNLFSAIDERRHIP 543 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R IF LGIRHVG + LA++Y ++ F + + + W L+ + VG ++A Sbjct: 544 LGRLIFGLGIRHVGESASNLLARHYGTWAIFEAAMKDAATMEGEAWDDLLSINGVGTVLA 603 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 Q++V +++ L+ + S + K +VFTG+L+++ R +A+ Sbjct: 604 QSLVSAMNQEAERASMDRLVAHLDVEEAVRPDTDGSPVAGKIVVFTGSLERMTRAEAKAR 663 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +GA VS +S+KTDI+++G GSK +KA++LG+ +++E+ +L L+ Sbjct: 664 AEAMGAKVSGSVSKKTDIVVIGPGAGSKEKKARELGLTVLDEDAWLELI 712 >gi|163794455|ref|ZP_02188426.1| NAD-dependent DNA ligase [alpha proteobacterium BAL199] gi|159180179|gb|EDP64702.1| NAD-dependent DNA ligase [alpha proteobacterium BAL199] Length = 696 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 284/714 (39%), Positives = 419/714 (58%), Gaps = 29/714 (4%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E LS +A+ EL L IS D Y+ P++ D+EYDAL+RR AI FPDL Sbjct: 11 PVEELSDAEAKAELRRLSDAISEADRQYHVEDAPVLTDAEYDALRRRNQAIEERFPDLKL 70 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++ P+ ++ + KV H+ P LSL +N ED+ +F R+ RF +++ + Sbjct: 71 ADSPS---ERVAPGPSEGFSKVRHARPMLSLANAFNDEDVHEFARRVRRFLSLGEEDELA 127 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 EPKIDG +RY G+ A RGDG GE+++ + + +P L +P I+EV Sbjct: 128 LVAEPKIDGLSAALRYVDGRLEVGATRGDGTEGENITRNLETLDDVPTTLPAGVPGILEV 187 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY++K+DF+ALND G K +ANPRNAA+G LR+L+PT R L FF + G+ Sbjct: 188 RGEVYMTKDDFVALNDRQAKAGGKIFANPRNAAAGSLRQLDPTITAARPLRFFAYSWGEI 247 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A +E L+K+ GF N ++ + ++ Y ++ R+TLPYDIDG+VYKV Sbjct: 248 SENIADTHWEFLKKLEAWGFTTNPLSQRCESVESALAVYADIGERRTTLPYDIDGVVYKV 307 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D Q++LG +R+PRW I+HKF +QA T L I+IQ+GRTG LTPVARLEPV + G Sbjct: 308 DRLDWQQRLGMVSRAPRWAIAHKFKAEQAETVLKAIEIQVGRTGALTPVARLEPVKVAGV 367 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHNE G++ R +D+RVGD V+++RAG+VIP+VV +I+ +R D+ Sbjct: 368 TVSNATLHNE---------GEIRR--KDVRVGDTVVIQRAGDVIPQVVRVILEKRPADSV 416 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + FP CP C S D G+ + RCTGGL C AQ +ERLKHFVSRDAF+IEGL Sbjct: 417 EYVFPETCPECGS----DAEQPEGEAI--RRCTGGLICPAQAVERLKHFVSRDAFDIEGL 470 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+D F+ + I+ P DIF L++ + + G +S NL +I RR Sbjct: 471 GSKQIDGFYSN----GLIKRPGDIFRLKQHRDVLIGE----KGTKTISTDNLLAAIEDRR 522 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I +RFI+SLGIR VG AR LA Y + + + ++ L+ + +G Sbjct: 523 SIGFDRFIYSLGIRQVGQATARLLAINYGTLEALRTAMAAAHDPESEAHADLLNIDQIGS 582 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +A+ + +F+ N ++ L E++ + S I K +VFTGTL +I R++A Sbjct: 583 SVAKDLADFFAEDHNAEVLDDLAAELTIAPFAAPAASDSPIAGKTVVFTGTLTRIGRNEA 642 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD +I+G + GSK KA+ LGV ++E+++ L+ + Sbjct: 643 KAKAESLGAKVAGSVSKKTDYVIIGADAGSKAAKAEALGVPTLSEDEWFTLIGE 696 >gi|297717812|gb|ADI50049.1| DNA ligase [Candidatus Odyssella thessalonicensis L13] Length = 676 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 275/697 (39%), Positives = 416/697 (59%), Gaps = 26/697 (3%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L + I+YHD+ Y+Q P I D+ YDAL R I + FPDL R + P+ ++G ++ Sbjct: 1 LAKTIAYHDELYFQKDMPQISDAAYDALVVRNRQIENLFPDLRREDSPS---KRVGAPVS 57 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 KV H IP LSLE + +D+ F R+ RF D EPKIDG + Y Sbjct: 58 KGFKKVKHRIPMLSLENAFTSDDVINFFERVRRFLSLPSDQEFPIVAEPKIDGLSAALHY 117 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALN 202 ++GK AA RGDG GED++ +R I +P+ L N+PE +EVRGE+Y++++DF ALN Sbjct: 118 QRGKLRLAATRGDGSEGEDITENVRCIIDVPQTLIGKNVPESLEVRGEIYMNRSDFFALN 177 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKM 261 + +ANPRNAA+G +R+L+PT R L FF + S +E L+ + Sbjct: 178 QQRQQESEPEFANPRNAAAGSVRQLDPTVTARRPLRFFAYYYDAISGDTTMTHHEALENL 237 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 R GF VN ++ + + YYN + + R+ LPYDIDG+VYK+D Q++LG R+ Sbjct: 238 RRWGFTVNPEIQLCLSIAQLQDYYNSINARRADLPYDIDGVVYKIDALQWQRRLGSVGRT 297 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PR+ ++HKF ++A T L DI IQ+GRTG+LTPVA L+PV +GG +++ ATLHN D I Sbjct: 298 PRYALAHKFEAEKAETILEDIAIQVGRTGVLTPVAHLKPVTVGGVVVSRATLHNADEI-- 355 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +D+RVGD V+++RAG+VIP++V ++ +R P++Q F FP+ CP C + Sbjct: 356 ---------ARKDVRVGDHVIIQRAGDVIPQIVSVVKEKRLPESQSFDFPATCPACGGEI 406 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 V G++ A RC L C AQ +ERLKHFVSRDAF+IEGLG + ++ F++ Sbjct: 407 VY----VPGEV--ARRCMNRLLCPAQAVERLKHFVSRDAFDIEGLGNRNIEAFYEEG--- 457 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I P DIFTL R + S T + G+G S NL+++I RR I+L+RFI++LGI Sbjct: 458 -LIHSPVDIFTLAARDRESLTPLRAKEGWGSQSAANLFEAIENRRTITLDRFIYALGIPQ 516 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG+ A+ LA++Y + N + D ++ L+ + +G +A+ I+ F+ N Sbjct: 517 VGSVTAKLLARHYHTLPNLLNTLQQAQDPTTDAYVDLLSLDGIGKNMAEDILSFFHEAHN 576 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 + ++AL E+S E + +S + K +VFTGTL ++ R +A+ +LGA V+ + Sbjct: 577 LKVIDALSHELSIPAYALEMSTTSAVSGKTVVFTGTLTRMSRAEAKATAERLGAKVAGSV 636 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S+KTD++IVG + GSK A +LGV++++E Q++ L+ Sbjct: 637 SKKTDLVIVGADAGSKARAAAELGVQVLDENQWMALI 673 >gi|83592275|ref|YP_426027.1| DNA ligase (NAD+) [Rhodospirillum rubrum ATCC 11170] gi|123753272|sp|Q2RVV5|DNLJ_RHORT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83575189|gb|ABC21740.1| DNA ligase (NAD+) [Rhodospirillum rubrum ATCC 11170] Length = 698 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 288/718 (40%), Positives = 433/718 (60%), Gaps = 35/718 (4%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +IP+ L+ +A +EL L EI+ HD Y+Q P I D EYDAL RR + I AFP+L Sbjct: 1 MIPVADLTEAEAARELERLAAEIARHDRLYHQQDAPEITDGEYDALVRRNNEIEAAFPEL 60 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ +G KVTH++P LSL +++ ++ R+F RI RF + + Sbjct: 61 VRGDSPSA---HVGAAPAEGFAKVTHALPMLSLGNVFSDDEAREFDQRIRRFLSLDGETT 117 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPE 183 I + EPKIDG + RYE G + AA RGDG +GED++A + + +P+ L+ + +PE Sbjct: 118 ISYVAEPKIDGLSFSARYENGVYRRAATRGDGTTGEDITANLATLTDLPQRLTGDGPVPE 177 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVH 241 ++EVRGEV+++K DF ALN I G KP+ANPRNAA+G LR+L+P +ITR L+ F + Sbjct: 178 VLEVRGEVFMTKADFRALNQRQIDAGAKPFANPRNAAAGSLRQLDP-EITRSRSLSLFAY 236 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+ + + + L++++ GFPVN R ++ + + R+ L YDIDG Sbjct: 237 ASGEVKGLEVESHHAFLERLKTWGFPVNPQTRPCQGVEDLIEATHALALQRAALDYDIDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD QK+LG +R+PRW I+ KF ++A T + I IQ+GRTG LTPVA LEPV Sbjct: 297 VVYKVDRVDWQKRLGFVSRAPRWAIARKFPAERAQTTVKAIQIQVGRTGTLTPVAILEPV 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG ++ ATLHNED I +D+R+GD V ++RAG+VIP+VV++++++R Sbjct: 357 TVGGVVVGRATLHNEDEI-----------ARKDVRIGDMVTIQRAGDVIPQVVEVLLDQR 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 D+ PF FP CP+C S VR + G++ A RC GGL CSAQ +ERLKHFVSRDAF Sbjct: 406 PADSAPFVFPETCPVCGSHAVR----QEGEV--ARRCAGGLICSAQAVERLKHFVSRDAF 459 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR--QQTSTTKIENILGFGDVSVTNLY 539 +IEGLG + ++ F I PADIF L+ + + + + + G+G S NL+ Sbjct: 460 DIEGLGGKHIETFHNEG----LITQPADIFALEAKDNEPGALQHLRSREGWGPKSAENLF 515 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I R+ I L+RFI++LGIR VG AR LA +Y S+ + + ++ ++ + L Sbjct: 516 KAITARKTIPLDRFIYALGIRQVGQATARLLAGHYASFAAWRKAMDEAQTEGSEAFADLQ 575 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTG 656 + +G +A+ +V F+ N A++AL+ EV R + S + K +VFTG Sbjct: 576 NIESIGPSVARDLVAFFGEEHNRAALDALIDAGVEVL-DFARPQAAGDSPLAGKTVVFTG 634 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TL + R +A+ LGA V+ +S KTD ++VG + GSK +KA++LG+ +++E +F Sbjct: 635 TLDTMSRGEAKARALALGAKVTGSVSAKTDYVVVGADAGSKEKKARELGLTVLSEAEF 692 >gi|258542980|ref|YP_003188413.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01] gi|256634058|dbj|BAI00034.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637118|dbj|BAI03087.1| DNA ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640170|dbj|BAI06132.1| DNA ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643227|dbj|BAI09182.1| DNA ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646282|dbj|BAI12230.1| DNA ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649335|dbj|BAI15276.1| DNA ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652321|dbj|BAI18255.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655379|dbj|BAI21306.1| DNA ligase [Acetobacter pasteurianus IFO 3283-12] Length = 685 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 288/709 (40%), Positives = 421/709 (59%), Gaps = 38/709 (5%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ +QAR+EL L EI++H+ YY+ P I D+EYDAL+RR DAI P+ +E Sbjct: 1 MTQQQAREELERLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVAQHPE---AEPE 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--IFFT 129 N +G + + K H +P LSL+ +++ ED FI+R RF D + + F Sbjct: 58 NSAAQAVGAAPDTAFGKHIHLVPMLSLDNVFDREDFEGFISRATRFLGLDQDATEQLIFV 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 EPKIDG I++ YEKG+FV RGDG GEDV+A +R + +P LS + P++IE+RG Sbjct: 118 GEPKIDGLSISLTYEKGRFVRGTTRGDGTEGEDVTANLRTLKDLPLRLSGSYPDLIEIRG 177 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV++SK FL LN A ++ +ANPRNAA+G LR+L+P R L+ F + LG SE Sbjct: 178 EVFLSKKHFLELNAAQEAANKRLFANPRNAAAGSLRQLDPKITAQRPLSLFAYALGFCSE 237 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ + L++++ GFPVN RQ +++ E+ R+ L YDIDG+VYK+D+ Sbjct: 238 KISRSHWAYLEQLKAWGFPVNPLSRQIKGVEDAEAFFAEVSQSRAELAYDIDGVVYKIDD 297 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG R+PRW I+ KF +QA TRL +I+IQ+GRTG LTPVA LEPVN+GG L+ Sbjct: 298 LALQERLGFAGRAPRWAIAWKFPAEQAITRLKEIEIQVGRTGALTPVAHLEPVNVGGVLV 357 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN-ERHPDAQP 427 ATLHNED I +D+R GD V ++RAG+VIP+V+ + + + P P Sbjct: 358 MRATLHNEDEI-----------ARKDVRPGDMVFIQRAGDVIPQVLGVAPSPDGTPRQAP 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + FP CP+C + VR A RCTGGL C AQ +ERL HFVSR AF+IEGLG Sbjct: 407 YHFPDHCPVCGAAAVRPEGE------AVRRCTGGLTCPAQVVERLIHFVSRQAFDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + F D I P DIF L IE G+G+ SV L +I RR Sbjct: 461 DRSIREF---HDIGL-ILTPGDIFRLHEH----AADIEKRDGWGEQSVQKLLQAIESRRT 512 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 ISL RFI++LGIR +GA AR LA++Y +Y+N+ ++ +D L L + +G Sbjct: 513 ISLSRFIYALGIRRIGASNARLLARHYGTYENWFSQMQAAAIIGSDARLELGSITGIGTT 572 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHK 665 A+ +V F N+ L ++ ++ E+ +SE + K +VFTGTL + R + Sbjct: 573 TAEDLVAFVAEEHNL----QTLADLHANLTITEETAASEGALAGKTIVFTGTLHTMTRPE 628 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 A+ ++GA VS +S+KTD++++G+ GSK +KA +LG++ M+E ++ Sbjct: 629 AKATAERMGAKVSDSVSKKTDLVVLGEKAGSKAKKAVELGLQTMDEAEW 677 >gi|89054995|ref|YP_510446.1| DNA ligase, NAD-dependent [Jannaschia sp. CCS1] gi|123401112|sp|Q28PE1|DNLJ_JANSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|88864544|gb|ABD55421.1| DNA ligase NAD-dependent [Jannaschia sp. CCS1] Length = 752 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 289/747 (38%), Positives = 438/747 (58%), Gaps = 58/747 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S + A+ L+ L + +S + Y+ P + D++YDALKR AI AFPDL R++ P Sbjct: 15 FSADAAKTRLAELAKRLSDANTAYHAADAPDLSDADYDALKRENAAIEAAFPDLKRADSP 74 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + +++G K+TH+ LSL ++ D+ F+ I R+ + + FT E Sbjct: 75 S---DQVGAAPAEGFSKLTHTQRMLSLANAFDAGDVPDFVAGIRRYLNLGAEADLPFTAE 131 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++RYE G+ V AA RGDG GE+V+A R I IP+ L+ + P+++EVRGEV Sbjct: 132 PKIDGLSLSLRYEDGQLVSAATRGDGAIGENVTANARTIDDIPQTLT-DAPDVLEVRGEV 190 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEI 249 Y+S DF ALND G K +ANPRNAA+G LR+L+ + ITR L FF + G+ S Sbjct: 191 YMSHADFAALNDRQAEAGAKTFANPRNAAAGSLRQLDAS-ITRSRPLRFFAYAWGEVSAP 249 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A Q L ++ LGF +N+ + ++ ++++Y ++ R+ L YDIDG+VYK+D+ Sbjct: 250 LAATQSGALNTLKTLGFQINDRTKTCHSAEDMLAHYASIEQDRADLGYDIDGVVYKIDDL 309 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL PV +GG +++ Sbjct: 310 DYQRRLGMRSTTPRWAIAHKFPAELAWTTLEAIDIQVGRTGALSPVARLTPVTVGGVVVS 369 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNEDYI G DA+G +R G+DIRVGDRV V RAG+VIPKV D+ + +R + ++ Sbjct: 370 NATLHNEDYIAGRDANGGPIRDGKDIRVGDRVQVYRAGDVIPKVADVDLAKRPENTAKYA 429 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP CQS +R+ A RCTGGL C AQ +E+LKHFVSR AF+I+GLG + Sbjct: 430 FPDHCPQCQSEAIREEGD------AVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGLGAK 483 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 Q++ F+ I PADIF L+ ++ N G+G+ S T+L+++I+ +R+I+ Sbjct: 484 QVEAFYLD----GWIAEPADIFRLKENYGEGMKQLRNREGWGEKSATSLFNAIDDKRSIA 539 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII----AHNNDD----------- 594 L R IF+LGIRHVG A LA+++ +++ A+ ++ AH + Sbjct: 540 LHRLIFALGIRHVGEVAASDLARHFTTWKALAEIVDQAAPAAEAHRRAEDAVLAERKAAA 599 Query: 595 --------------------------WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 W L + +G +A ++V +Q R +++ L Sbjct: 600 DEGRRASLQPQRDKAWADTPEPAKAAWDDLTGIDGIGATVAVSLVTTFQQARERASIDRL 659 Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 + E++ + S + +VFTG L+++ R +A+ +GA VS +S KTDI+ Sbjct: 660 ITELTDIQPPEARATQSAVAGLTVVFTGALERMTRAEAKARAEAMGAKVSGSVSAKTDIV 719 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + G GSK +KA+ LG++++ EEQ+L Sbjct: 720 VAGPGAGSKEKKAKDLGIELLTEEQWL 746 >gi|329115587|ref|ZP_08244309.1| DNA ligase [Acetobacter pomorum DM001] gi|326695015|gb|EGE46734.1| DNA ligase [Acetobacter pomorum DM001] Length = 710 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 288/710 (40%), Positives = 421/710 (59%), Gaps = 40/710 (5%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++++QAR+EL L EI++H+ YY+ P I D+EYDAL+RR DAI P ++E Sbjct: 26 MTLQQAREELEHLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVAQHP---QAEPE 82 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW--QKKDDNSIFFT 129 N +G + + K H +P LSL+ +++ ED FI+R RF ++ + F Sbjct: 83 NSAAQAVGAAPDTAFGKHIHLVPMLSLDNVFDREDFEGFISRATRFLGLDQEATEQLIFV 142 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 EPKIDG I++ YEKG+FV RGDG GEDV+A +R + +P LS + P++IE+RG Sbjct: 143 GEPKIDGLSISLTYEKGRFVRGTTRGDGTEGEDVTANLRTLKDLPLRLSGSYPDLIEIRG 202 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247 EV++SK FL LN A ++ +ANPRNAA+G LR+L+ + IT R L+ F + LG S Sbjct: 203 EVFLSKKHFLELNAAQEAANKRLFANPRNAAAGSLRQLD-SKITAQRPLSLFAYALGFCS 261 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E ++ + L++++ GFPVN RQ ++ E+ R+ L YDIDG+VYK+D Sbjct: 262 EKISRSHWAYLEQLKAWGFPVNPLSRQIKGVEDAEVFFAEVSQNRAELAYDIDGVVYKID 321 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ++LG R+PRW I+ KF +QA TRL +I+IQ+GRTG LTPVA LEPVN+GG L Sbjct: 322 DLALQERLGFAGRAPRWAIAWKFPAEQAVTRLKEIEIQVGRTGALTPVAHLEPVNVGGVL 381 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERHPDAQ 426 + ATLHNED I +D+R GD V ++RAG+VIP+V+ + + P Sbjct: 382 VMRATLHNEDEI-----------ARKDVRPGDMVFIQRAGDVIPQVLGVAPSTDSTPRQA 430 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP C + VR A RCTGGL C AQ +ERL HFVSR AF+IEGL Sbjct: 431 PYHFPDHCPACGAAAVRPEGE------AVRRCTGGLTCPAQVVERLIHFVSRQAFDIEGL 484 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + F D I P DIF L IE G+G+ SV L +I RR Sbjct: 485 GDRSIREF---HDIGL-ILTPGDIFRLHEH----AADIEKRDGWGEQSVQKLLQAIESRR 536 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 ISL RFI++LGIR +GA AR LA++Y +Y+N+ ++ +D L L + +G Sbjct: 537 TISLSRFIYALGIRRIGASNARLLARHYGTYENWFNQMQAAAIIGSDARLELGSITGIGT 596 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRH 664 A+ +V F N+ L ++ ++ E+ +SE + K +VFTGTL + R Sbjct: 597 TTAEDLVAFVAEEHNL----QTLADLRANLTITEETAASEGALAGKTIVFTGTLHTMTRP 652 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +A+ ++GA VS +S+KTD++++G+ GSK +KA +LG++ M+E ++ Sbjct: 653 EAKATAERMGAKVSDSVSKKTDLVVLGEKAGSKAKKAVELGLQTMDEAEW 702 >gi|114327083|ref|YP_744240.1| NAD-dependent DNA ligase [Granulibacter bethesdensis CGDNIH1] gi|122327935|sp|Q0BV35|DNLJ_GRABC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114315257|gb|ABI61317.1| NAD-dependent DNA ligase [Granulibacter bethesdensis CGDNIH1] Length = 700 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 284/717 (39%), Positives = 428/717 (59%), Gaps = 34/717 (4%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 L P EALS +AR EL L I+ DD YY+ P++ D++YDAL++R I FPD Sbjct: 10 SLTPPEALSPAEARAELERLASRIAELDDAYYRDDAPLVTDADYDALRQRNAEIERLFPD 69 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 N P N++G + + K+ H +P LSL+ +++ E+ +F R RF Sbjct: 70 AILK---NSPANRVGTAPSSAFAKIRHRVPMLSLDNVFDTEEFAEFCARARRFLNLP--A 124 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 S F EPKIDG I++ YE G AA RGDG GEDV+A +R + +P+ L P Sbjct: 125 SPRFVAEPKIDGLSISLTYENGILTRAATRGDGMEGEDVTANVRTLRDVPQTLHGEAPAF 184 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 IE+RGEV++SK FL LN+ +G+K +ANPRNAA+G LR+L+ + R L F + Sbjct: 185 IEIRGEVFMSKAAFLELNETQARLGQKIFANPRNAAAGSLRQLDASVTANRPLALFAYAQ 244 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G++S A+ ++ L +++ GF VN + + ++ + + RSTLPYDIDG+V Sbjct: 245 GESSAPVAETHWDYLTRLKDWGFVVNPLSQLIEDENAAAAFTTRIAAGRSTLPYDIDGVV 304 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 +K+D+ SLQ++LG R+PRW + KF +QA+T L IDIQ+GRTG LTPVA L+ VN+ Sbjct: 305 FKIDDLSLQRRLGFVGRAPRWATAWKFPAEQATTVLEKIDIQVGRTGALTPVAHLQAVNV 364 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG L+T ATLHNED I +D+R GD V+++RAG+VIP++V +++ +R Sbjct: 365 GGVLVTRATLHNEDEI-----------ARKDVREGDTVILQRAGDVIPQIVSVVLEKRPD 413 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 A+PF+ CP+C S +R G++V RCTGGL C AQ +ERL H VSR AF+I Sbjct: 414 GARPFAPLEHCPVCGSLAIR----PPGEVV--RRCTGGLTCEAQVVERLIHMVSRPAFDI 467 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG++ + F + + PADIF L R+ +I G+G +S NL +I Sbjct: 468 DGLGEKSILEFHRDG----LVSGPADIFRLPARED----EIARRDGWGSLSARNLSQAIE 519 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 RR+I +RF+++LGIR +G AR LA++Y S+ + ++ +D+ L+L + Sbjct: 520 ARRSIPFDRFLYALGIRRIGETNARLLARHYGSFTEWRTQMLAARQIGSDERLALGSITG 579 Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 +G IA+ +V+F+ PRNI ++ L L +PS G + S + K +VFTGTLQ Sbjct: 580 IGPTIAEELVDFFAEPRNIDTLDELAGMLTITAPSGGLSSAALDSPLNGKIIVFTGTLQA 639 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + R +A+ +GA V+ +S+KTD ++ G + GSK +KA +LG++ ++EE++L L Sbjct: 640 MTRPEAKARAESMGAKVTDSVSKKTDFVVTGADAGSKAKKAAELGIRTLSEEEWLAL 696 >gi|84516174|ref|ZP_01003534.1| DNA ligase [Loktanella vestfoldensis SKA53] gi|84509870|gb|EAQ06327.1| DNA ligase [Loktanella vestfoldensis SKA53] Length = 722 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 291/717 (40%), Positives = 424/717 (59%), Gaps = 24/717 (3%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I + L+ +A EL+ L Q ++ + Y++ P I D+ YDALK+R AI F +L Sbjct: 22 IAVADLTRAEAMVELARLAQTLAQANTAYHRNDTPEISDAAYDALKQRNAAIEARFRELK 81 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R++ P+ +++G + KV H++ LSL ++ +D+ F R+ ++ D + Sbjct: 82 RADSPS---DQVGAVVADGFGKVQHAVRMLSLGNAFSDDDVTDFDERLRKYLGLTADQPL 138 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 +T EPKIDG +++RYE G V AA RGDG GE+V+A I IP+ L+ P ++E Sbjct: 139 RYTAEPKIDGLSLSLRYEDGVLVQAATRGDGAVGENVTANACTIADIPQRLT-GAPAVLE 197 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S +DF ALN G K +ANPRNAA+G LR+L+ R L FF + G Sbjct: 198 VRGEVYMSHDDFAALNARQADKGAKTFANPRNAAAGSLRQLDAGITAARPLRFFAYAWGA 257 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A Q + ++ LGF N ++ +++ Y+ +++ R++L YDIDG+VYK Sbjct: 258 LSAPLAATQSGAIARLAELGFATNPLTATCDSPADLIAIYSGIEAQRASLGYDIDGVVYK 317 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ +LQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL PV +GG Sbjct: 318 VDDLALQQRLGFRSTTPRWAIAHKFPAELAWTVLDAIDIQVGRTGALSPVARLVPVTVGG 377 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYI G G+ +R GRDIRVGD V V RAG+VIPK+ D+ R A Sbjct: 378 VVVSNATLHNEDYIAGRGGDGQPIRQGRDIRVGDWVQVYRAGDVIPKIKDVDSARRPAGA 437 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ FP CP C S +RD A RCTGG+ C AQ +ERLKHFVSR AF+IEG Sbjct: 438 TPYIFPDTCPECGSPAIRDPGD------AVRRCTGGMICPAQAVERLKHFVSRAAFDIEG 491 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F I P DIFTL+ R +++N G+G S NL+ +I+ + Sbjct: 492 LGAKQVEQFHADG----WITTPVDIFTLRARYGQGLQQLKNREGWGAKSADNLFAAIDDK 547 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I+L R I++LGIRHVG A LA +Y S+ FA + W +L + VG Sbjct: 548 RAIALNRLIYALGIRHVGESSAALLANHYGSWAGFATAMQAAHIGQGPAWDALTSIDGVG 607 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 ++A +++ QNP ++ AL+ ++ +P I S + +VFTGTL+K+ Sbjct: 608 AVMATSLITTLQNPSEAASIAALVAQLDVQDAPKIAS-----DSPVSGLTVVFTGTLEKM 662 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V+ +S KTDI++ G GSK KA+ LG++ M+E+ +L L+ Sbjct: 663 TRAEAKARAESLGAKVAGSVSAKTDILVAGPGAGSKAAKAEALGIRTMDEDGWLALI 719 >gi|241760920|ref|ZP_04759009.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374539|gb|EER64000.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 731 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 300/724 (41%), Positives = 445/724 (61%), Gaps = 53/724 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS EQA EL L IS++D Y+ P + DSEYDAL R I FPDL R P Sbjct: 26 LSREQAVIELERLANLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIR---P 82 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+G N L K+ H LSL+ + +D+ F+ R+ RF+ K++ ++ T+E Sbjct: 83 DSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAVICTVE 142 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 PKIDG ++RYEKG A RGDG GEDV+ +R I IP+ L N PEIIE+RGE Sbjct: 143 PKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEIIEIRGE 202 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 VY++K+DF ALN +K +ANPRNAA+G LR+L+P +IT R L F HG G+ + Sbjct: 203 VYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDP-NITARRSLRFLAHGWGEATS 261 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + A QY M++ + G V+N + +A+ ++ +Y ++++ R+ L +DIDG+VYK+D+ Sbjct: 262 LPADTQYGMMKMIESYGLSVSNLLARADNIGQMLDFYQKIEAERADLDFDIDGVVYKLDQ 321 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q++ G AR+PR+ ++HKF ++A T LLDI+IQ+GRTG+LTPVA+LEPV +GG ++ Sbjct: 322 LDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVGGVVV 381 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ++ATLHN D I+ L A R GDRVLV+RAG+VIP++V+ + ++ D + Sbjct: 382 SSATLHNSDEIERLGA-----------RPGDRVLVQRAGDVIPQIVENLTSD--VDRPIW 428 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP+C S R+ G++ A RCTGGL C AQ++ERL HFVSR AF IEGLGK Sbjct: 429 HFPHRCPVCDSVARRE----EGEV--AWRCTGGLICPAQRVERLCHFVSRTAFEIEGLGK 482 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ FF + I PADIF L +++Q + G+G++SV NL +I+KRR + Sbjct: 483 SHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDKRRKV 534 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------AQEINNIIAHNND--------- 593 +RF+F+LGIRHVGA AR LAK Y ++ NF A + I+ +++ Sbjct: 535 PFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEKYQKR 594 Query: 594 ---DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 + +S +P +G I +++++F+ N V LL+EV E SS + K Sbjct: 595 VDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFEL-ASSPLSGK 653 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +VFTG+LQKI R +A+ LGA V++ +S+KT++++ G+ GSKL KA++L + I++ Sbjct: 654 IIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDISIID 713 Query: 711 EEQF 714 E+++ Sbjct: 714 EDRW 717 >gi|114570616|ref|YP_757296.1| DNA ligase [Maricaulis maris MCS10] gi|122315591|sp|Q0AMX9|DNLJ_MARMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114341078|gb|ABI66358.1| DNA ligase, NAD-dependent [Maricaulis maris MCS10] Length = 701 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 286/716 (39%), Positives = 432/716 (60%), Gaps = 29/716 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+ +AR E + L +EI+ HD YYQ P I D+ YDAL+R+ +AI FP Sbjct: 7 VDQLTEAEARAEHARLAREIAGHDKAYYQSDAPKISDAAYDALRRKLEAIEVRFPQFI-- 64 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 D P ++G + ++ H++P LSL +N ED+ F+ RI RF + + + Sbjct: 65 -DLLSPTQRVGAVPSGKFGEIRHAVPMLSLGNAFNDEDVADFVGRIRRFLGLAESDVVAV 123 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEV 187 T EPKIDG ++RY GK V+ A RGDG +GEDV+ + + IP L + P+++EV Sbjct: 124 TAEPKIDGLSASLRYVGGKLVHGATRGDGQTGEDVTQNLLTLDDIPDTLPPGDWPDVVEV 183 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 RGEVY+S DF ALN+ I G+ Y NPRNAA+G LR+++P + R L FF + G+ Sbjct: 184 RGEVYMSHADFAALNERQIEAGKDAYKNPRNAAAGSLRQIDPKMTSQRPLRFFAYAWGEV 243 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE + Q + + +GFPVN+ + + T +++ Y ++++ R+ L YDIDG+VYK Sbjct: 244 SEPLSDTQMGAVARFGEMGFPVNDLMARCETVEALLAVYRDIEARRAGLGYDIDGVVYKA 303 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D Q++LG AR+PRW I+HKF +QA+T L IDIQ+GRTG LTPVARL PV +GG Sbjct: 304 DRLDWQERLGFVARAPRWAIAHKFPAEQATTILEAIDIQVGRTGALTPVARLTPVTVGGV 363 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++TNATLHN+D I+ +DIRVGD V+++RAG+VIP+VV ++ +R + Sbjct: 364 VVTNATLHNQDEIE-----------RKDIRVGDTVVIQRAGDVIPQVVRVVDPDRPGRGE 412 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F FP+ CP+C S+ +R+ + KTGKL RCTGGL C AQ ERLKHFVSR AF+IEGL Sbjct: 413 AFDFPTECPVCGSQALREHDAKTGKLDVVRRCTGGLICGAQLKERLKHFVSRKAFDIEGL 472 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK--IENILGFGDVSVTNLYDSINK 544 G +Q++ F + I PA IFTL+ R + K ++ GFG+ S+ NL+ SI Sbjct: 473 GIKQIEAFQEEG----LITEPAHIFTLKARNEAGEIKPPLQEREGFGETSIRNLFTSIED 528 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL--SLIRVP 602 RR I+L RF+ +LGIRHVG + A+ Y S+ F N+ +D+ + ++ + Sbjct: 529 RRTITLARFLNALGIRHVGENTSALFARTYGSWAAFHAAAANL----SDEAVRAEMLGID 584 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G+ +A+ +++ N ++ L+ +++ N S + K +VFTG L+++ Sbjct: 585 GIGNAAVEALEQYFTEAHNRDLLDRLVAQLTIEDAEAIAN-DSPVAGKTVVFTGALERMT 643 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V+ +S KTD ++ G GSK +KA +LGV+ + E+++ L+ Sbjct: 644 RDEAKAKAQALGAKVAGSVSGKTDYLVAGPGAGSKAKKAAELGVETLTEDEWFDLI 699 >gi|91205008|ref|YP_537363.1| NAD-dependent DNA ligase LigA [Rickettsia bellii RML369-C] gi|122990942|sp|Q1RK40|DNLJ_RICBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91068552|gb|ABE04274.1| DNA ligase, NAD-dependent [Rickettsia bellii RML369-C] Length = 689 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 285/715 (39%), Positives = 432/715 (60%), Gaps = 35/715 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 IE ++ E+A+K L L +I+ ++ YY KP++ D+EYD L + FP L Sbjct: 4 IEKINEEEAKKLLIELADKIAQYNHAYYIEDKPLVSDAEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P KIG ++ KVTH +P LSL +++ ED++ F+ RI F + + IF Sbjct: 64 ---NSPSKKIGAKVENKFAKVTHQVPMLSLSNVFDEEDVKDFLDRIKSFLRLDQFSPIF- 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG Y+ G A RGDG+ GED++A I+ I P ++ N PE++EVR Sbjct: 120 -CEPKIDGLSFAATYKNGILTTGATRGDGYIGEDITANIKTIKDFPHKIN-NAPELLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI KNDF +LN E G+ +ANPRNAA+G LR+L+P+ R L +FV+ +G Sbjct: 178 GEIYIEKNDFTSLNQEQEQQGKDKFANPRNAAAGSLRQLDPSVTAKRPLKYFVYAIGSAK 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E A Q ++L K + LGF VN + AN+ I S+Y +K+ R LPY+IDG+VYK++ Sbjct: 238 EELANSQDQLLAKFKELGFNVNEIGKLANSEEEIFSFYEYLKTNRKNLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG + Sbjct: 298 DFALQDRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVI 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+RVGD V ++RAG+VIP++ + + +R DA Sbjct: 358 VSRATLHNYQEI-----------ARKDVRVGDYVFLQRAGDVIPQITGVDLAKRSADATT 406 Query: 428 FSFPSFCPICQSR---VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 F P FCP C S+ V D+ RC GL C AQ ER++HFVS++A +IE Sbjct: 407 FDPPLFCPSCNSKLHYVPEDI---------IIRCDNGLNCPAQNYERIRHFVSKNAMDIE 457 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++F D I P DIF L+ + + S TK+EN+ G+G SV NL+++I K Sbjct: 458 GLGRKQVEFLI---DKGL-ISNPYDIFFLKEKNEASLTKLENMDGWGKKSVENLFNNIEK 513 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +N+SL RFI++LGIRH+G + A+ L + + SY+NF ++ + ++ + + L + + Sbjct: 514 SKNVSLPRFIYALGIRHIGEQNAKLLTREFGSYENFIAQMELLKENDPEIYQKLNNLDGI 573 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 GD + I++F+ NI ++ L EV E S + K +VFTG++ + R Sbjct: 574 GDKMLVDIIDFFDVKENIELIKN-LSEVLNIEDYKETREQSSLTGKIVVFTGSMPTLSRA 632 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ +LGA V+A +S TD++I G++ GSKL+KA++LG+KI++E ++L L++ Sbjct: 633 EAKATAEKLGAKVAASVSSNTDLVIAGEDAGSKLKKAKELGIKIIDEAEWLTLVR 687 >gi|157827661|ref|YP_001496725.1| NAD-dependent DNA ligase LigA [Rickettsia bellii OSU 85-389] gi|166216232|sp|A8GXT8|DNLJ_RICB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157802965|gb|ABV79688.1| NAD-dependent DNA ligase LigA [Rickettsia bellii OSU 85-389] Length = 689 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 285/715 (39%), Positives = 432/715 (60%), Gaps = 35/715 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 IE ++ E+A+K L L +I+ ++ YY KP++ D+EYD L + FP L Sbjct: 4 IEKINEEEAKKLLIELADKIAQYNHAYYIEDKPLVSDAEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P KIG ++ KVTH +P LSL +++ ED++ F+ RI F + + IF Sbjct: 64 ---NSPSKKIGAKVENKFAKVTHQVPMLSLSNVFDEEDVKDFLDRIKSFLRLDQFSPIF- 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG Y+ G A RGDG+ GED++A I+ I P ++ N PE++EVR Sbjct: 120 -CEPKIDGLSFAATYKNGILTTGATRGDGYIGEDITANIKTIKDFPHKIN-NAPELLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI KNDF +LN E G+ +ANPRNAA+G LR+L+P+ R L +FV+ +G Sbjct: 178 GEIYIEKNDFTSLNQEQEQQGKDKFANPRNAAAGSLRQLDPSVTAKRPLKYFVYAIGSAK 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E A Q ++L K + LGF VN + AN+ I S+Y +K+ R LPY+IDG+VYK++ Sbjct: 238 EELANSQDQLLAKFKELGFNVNEIGKLANSEEEIFSFYEYLKTNRKNLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG + Sbjct: 298 DFALQDRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVI 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+RVGD V ++RAG+VIP++ + + +R DA Sbjct: 358 VSRATLHNYQEI-----------ARKDVRVGDYVFLQRAGDVIPQITGVDLAKRSADATT 406 Query: 428 FSFPSFCPICQSR---VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 F P FCP C S+ V D+ RC GL C AQ ER++HFVS++A +IE Sbjct: 407 FDPPLFCPSCNSKLHYVPEDI---------IIRCDNGLNCPAQNYERIRHFVSKNAMDIE 457 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++F D I P DIF L+ + + S TK+EN+ G+G SV NL+++I K Sbjct: 458 GLGRKQVEFLI---DKGL-ISNPYDIFFLKEKNEASLTKLENMDGWGKKSVENLFNNIEK 513 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +N+SL RFI++LGIRH+G + + LA+ + SY+NF ++ + ++ + + L + + Sbjct: 514 SKNVSLPRFIYALGIRHIGEQNVKLLAREFGSYENFIAQMELLKENDPEIYQKLNNLDGI 573 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 GD + I++F+ NI ++ L EV E S + K +VFTG++ + R Sbjct: 574 GDKMLVDIIDFFDVKENIELIKN-LSEVLNIEDYKETREQSSLTGKIVVFTGSMPTLSRA 632 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ +LGA V+A +S TD++I G++ GSKL+KA++LG+KI++E ++L L++ Sbjct: 633 EAKATAEKLGAKVAASVSSNTDLVIAGEDAGSKLKKAKELGIKIIDEAEWLTLVR 687 >gi|56551260|ref|YP_162099.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ZM4] gi|59802648|sp|P28719|DNLJ_ZYMMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56542834|gb|AAV88988.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ZM4] Length = 731 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 299/724 (41%), Positives = 445/724 (61%), Gaps = 53/724 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS EQA EL L + IS++D Y+ P + DSEYDAL R I FPDL R P Sbjct: 26 LSREQAVIELERLAKLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIR---P 82 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+G N L K+ H LSL+ + +D+ F+ R+ RF+ K++ ++ T+E Sbjct: 83 DSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAVICTVE 142 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 PKIDG ++RYEKG A RGDG GEDV+ +R I IP+ L N PEIIE+RGE Sbjct: 143 PKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEIIEIRGE 202 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 VY++K+DF ALN +K +ANPRNAA+G LR+L+P +IT R L F HG G+ + Sbjct: 203 VYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDP-NITARRSLRFLAHGWGEATS 261 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + A QY M++ + G V+N + +A+ ++ +Y ++++ R+ L +DIDG+VYK+D+ Sbjct: 262 LPADTQYGMMKVIESYGLSVSNLLARADDIGQMLDFYQKIEAERADLDFDIDGVVYKLDQ 321 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q++ G AR+PR+ ++HKF ++A T LLDI+IQ+GRTG+LTPVA+LEPV +GG ++ Sbjct: 322 LDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVGGVVV 381 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ++ATLHN D I+ L +R GDRVLV+RAG+VIP++V+ + + D + Sbjct: 382 SSATLHNSDEIERL-----------GVRPGDRVLVQRAGDVIPQIVENLTPD--VDRPIW 428 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP+C S R+ G++ A RCTGGL C AQ++ERL HFVSR AF IEGLGK Sbjct: 429 RFPHRCPVCDSVARRE----EGEV--AWRCTGGLICPAQRVERLCHFVSRTAFEIEGLGK 482 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ FF + I PADIF L +++Q + G+G++SV NL +I+KRR + Sbjct: 483 SHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDKRRKV 534 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------AQEINNIIAHNND--------- 593 +RF+F+LGIRHVGA AR LAK Y ++ NF A + I+ +++ Sbjct: 535 PFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEKYQKR 594 Query: 594 ---DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 + +S +P +G I +++++F+ N V LL+EV E SS + K Sbjct: 595 VDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFEL-ASSPLSGK 653 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +VFTG+LQKI R +A+ LGA V++ +S+KT++++ G+ GSKL KA++L + I++ Sbjct: 654 IIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDISIID 713 Query: 711 EEQF 714 E+++ Sbjct: 714 EDRW 717 >gi|114797923|ref|YP_759116.1| DNA ligase, NAD-dependent [Hyphomonas neptunium ATCC 15444] gi|122942770|sp|Q0C577|DNLJ_HYPNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114738097|gb|ABI76222.1| DNA ligase, NAD-dependent [Hyphomonas neptunium ATCC 15444] Length = 701 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 285/697 (40%), Positives = 414/697 (59%), Gaps = 40/697 (5%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YYQ P + D++YDAL++R AI FP L R + P +++G E K HS P Sbjct: 33 YYQNDAPELTDADYDALRQRNLAIEARFPALKREDSPT---DRVGAEAGDGFAKARHSAP 89 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ + ED+ F RI RF + ++ FT EPKIDG +++ YE GK + AA R Sbjct: 90 MLSLDNAFTDEDVADFAVRIRRFLGLAPEETLAFTAEPKIDGLSLSLTYENGKLMRAATR 149 Query: 155 GDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 GDG +GEDV+A R + IP ++ PE IEVRGEVY++K+ F LN GRK + Sbjct: 150 GDGQTGEDVTANARTLGDIPVKLKGKGWPERIEVRGEVYMAKSAFADLNAREAEAGRKVF 209 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAA+G LR+L+ +IT R L FF + SE FA+ Q+E ++ GF N+ Sbjct: 210 ANPRNAAAGSLRQLD-VEITKSRPLRFFAYAWAAASEPFAQTQFEAVKAFADWGFVTNSR 268 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + + T ++SYY E+++ R++L YDIDG+VYKVD Q++LG +R+PRW I+HKF Sbjct: 269 MIRIKTVEEVLSYYQEIEAERASLEYDIDGVVYKVDRLDWQQRLGFVSRAPRWAIAHKFP 328 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++A T LL IDIQ+GRTG LTPVARLEPV +GG +++NATLHNED I L Sbjct: 329 AEKAVTTLLGIDIQVGRTGSLTPVARLEPVTVGGVVVSNATLHNEDEIARL--------- 379 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 ++ GD+V ++RAG+VIP+V+ ++ P++ P CP+C S VR+++ G+ Sbjct: 380 --GVKPGDKVEIQRAGDVIPQVLRVV---EPGQGAPWAMPDTCPVCGSAAVREID-DAGR 433 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 RCTGGL C AQ +ERLKHFVSR A +I+GLG++Q+ F + +++ P DIF Sbjct: 434 ADVRRRCTGGLICPAQAVERLKHFVSRKALDIDGLGEKQVLLFHEKG----AVKAPQDIF 489 Query: 512 TLQRR-QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 L++ + +E GFG S LY +I+ RR + RF+ LGIR+VG + Sbjct: 490 RLKKNIEAAGLPPLEEWEGFGAQSARKLYSAIDARRKVPFARFLNGLGIRYVGQTTSAQF 549 Query: 571 AKYYLSYQNF-----AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN--IC 623 A+ +LS+Q+F A E I ++ + LI + +G A++++ F P N + Sbjct: 550 ARSFLSWQSFWAAVKAAEEGGI---ESEAYNELIGIDGIGQAAARSLMAFEGEPHNREML 606 Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 A EV I S + K +VFTGTL+K+ R +A+ + LGA V+ +S Sbjct: 607 AALLEEVEVEDEI---PAETGSPVTGKTVVFTGTLEKMTRDEAKARASALGAKVAGTVSA 663 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 KTDI+I G GSKL KA+QLG+ +M E+++L L+ + Sbjct: 664 KTDIVIAGPGAGSKLVKAEQLGLAVMTEDEWLALIGE 700 >gi|254453419|ref|ZP_05066856.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 238] gi|198267825|gb|EDY92095.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 238] Length = 661 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 280/668 (41%), Positives = 399/668 (59%), Gaps = 54/668 (8%) Query: 96 LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRG 155 LSL + +D+ +F + +F + ++ FT EPKIDG +++RYE GK V AA RG Sbjct: 2 LSLGNAFTDDDVSEFDKSVRKF-LGLETGALAFTAEPKIDGLSLSLRYEFGKLVQAATRG 60 Query: 156 DGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYAN 215 DG GE+V+A R I +P++L + P+I+EVRGEVY+S DF ALN G K +AN Sbjct: 61 DGAVGENVTANARTIHDVPQLLD-DAPDILEVRGEVYMSHADFEALNARQSKAGAKTFAN 119 Query: 216 PRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274 PRNAA+G LR+L+ +R L FF + G+ S A Q + +++ LGF N + Sbjct: 120 PRNAAAGSLRQLDVSVTKSRPLKFFAYAWGEVSAPLADTQSGAIARLKTLGFQTNPLTQI 179 Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334 ++++Y +++S R+TL YDIDG+VYKVDE +LQ +LG R+ +PRW I+HKF + Sbjct: 180 CTGPSDMIAHYRDIESQRATLGYDIDGVVYKVDELALQARLGFRSTTPRWAIAHKFPAEL 239 Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394 A T L IDIQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G G +RGG+D Sbjct: 240 AWTTLDAIDIQVGRTGALSPVARLSPVTVGGVVVSNATLHNEDYIAGRGNKGDDIRGGKD 299 Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 IRVGD V + RAG+VIPKV D+ + +R +A PF FP+ CP C S VR+ G +V Sbjct: 300 IRVGDWVQIYRAGDVIPKVADVDLTKRPVEATPFDFPTTCPKCGSDAVRE----EGDVV- 354 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514 RCTGGL C AQ +E+LKHFVSR AF+I+GLG +Q++ F+ D +I+ PADIFTLQ Sbjct: 355 -RRCTGGLICPAQAVEKLKHFVSRAAFDIDGLGAKQVEAFYN--DDQLAIKEPADIFTLQ 411 Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 R S TK+ N G+GD SV L+ +I+++R ISL R IF+LGIRHVG A+ LA++Y Sbjct: 412 ARDLDSFTKLANRDGWGDTSVKKLWQAIDEKREISLARLIFALGIRHVGEVTAQDLARHY 471 Query: 575 LSYQNFAQEIN----NIIAHNNDD------------------------------------ 594 +++ A+ + IAH D Sbjct: 472 GTWEVLAENVKLGRPAAIAHRAADEAEADERFIADRDGRRPRVSEARKLAIANAGLSRTA 531 Query: 595 ---WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 W LI +G +A + + N A+EAL++++ I + +S + K Sbjct: 532 TKAWAFLIDADGIGATVALSFSDALSNAEESKAIEALIQQLDTIIAPQTQASNSPVAGKT 591 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +VFTGTL+K+ R +A+ LGA VS +S KTD++I G GSK +KA G++ ++E Sbjct: 592 VVFTGTLEKMTRAEAKARAESLGAKVSGSVSAKTDLLIAGLGAGSKAKKAADFGIETLSE 651 Query: 712 EQFLFLLQ 719 + +L L + Sbjct: 652 DGWLALTK 659 >gi|11095423|gb|AAG29863.1|AF313764_6 DNA ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|49284|emb|CAA77966.1| DNA ligase [Zymomonas mobilis subsp. mobilis CP4] gi|382210|prf||1819268B DNA ligase Length = 731 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 297/724 (41%), Positives = 444/724 (61%), Gaps = 53/724 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS EQA EL L + IS++D Y+ P + DSEYDAL R I FPDL R P Sbjct: 26 LSREQAVIELERLAKLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIR---P 82 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+G N L K+ H LSL+ + +D+ F+ R+ RF+ K++ ++ T+E Sbjct: 83 DSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAVICTVE 142 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 PKIDG ++RYEKG A RGDG GEDV+ +R I IP+ L N PEIIE+RGE Sbjct: 143 PKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEIIEIRGE 202 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 VY++K+DF ALN +K +ANPRNAA+G LR+L+P +IT R L F HG G+ + Sbjct: 203 VYMAKSDFTALNARQTEENKKLFANPRNAAAGSLRQLDP-NITARRSLRFLAHGWGEATS 261 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + A QY M++ + G V+N + +A+ ++ +Y ++++ R+ L +DIDG+VYK+D+ Sbjct: 262 LPADTQYGMMKMIESYGLSVSNLLARADDIGQMLDFYQKIEAERADLDFDIDGVVYKLDQ 321 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q++ G AR+PR+ ++HKF ++A T LLDI+IQ+GRTG+LTPVA+LEPV +GG ++ Sbjct: 322 LDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVGGVVV 381 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ++ATLHN D I+ L +R GDRVLV+RAG+VIP++V+ + + D + Sbjct: 382 SSATLHNSDEIERL-----------GVRPGDRVLVQRAGDVIPQIVENLTPD--VDRPIW 428 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP+C S R+ G++ A RCTGGL C AQ++E L HFVSR AF I+GLGK Sbjct: 429 HFPHRCPVCDSVARRE----EGEV--AWRCTGGLICPAQRVEALCHFVSRTAFEIDGLGK 482 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ FF + I PADIF L +++Q + G+G++SV NL +I+KRR + Sbjct: 483 SHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDKRRKV 534 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------AQEINNIIAHNND--------- 593 +RF+F+LGIRHVGA AR LAK Y ++ NF A + I+ +++ Sbjct: 535 PFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEKYQKR 594 Query: 594 ---DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 + +S +P +G I +++++F+ N V LL+EV E SS + K Sbjct: 595 VDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFEL-ASSPLSGK 653 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +VFTG+LQKI R +A+ LGA V++ +S+KT++++ G+ GSKL KA++L + I++ Sbjct: 654 IIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDISIID 713 Query: 711 EEQF 714 E+++ Sbjct: 714 EDRW 717 >gi|260753112|ref|YP_003226005.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552475|gb|ACV75421.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 731 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 297/724 (41%), Positives = 443/724 (61%), Gaps = 53/724 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS EQA EL L IS++D Y+ P + DSEYDAL R I FPDL R P Sbjct: 26 LSREQAVIELERLANLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIR---P 82 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+G N L K+ H LSL+ + +D+ F+ R+ RF+ K++ ++ T+E Sbjct: 83 DSPSKKVGSRPNSRLPKIAHRAAMLSLDNGFLDQDVEDFLGRVRRFFNLKENQAVICTVE 142 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 PKIDG ++RYEKG A RGDG GEDV+ +R I IP+ L N PEIIE+RGE Sbjct: 143 PKIDGLSCSLRYEKGILTQAVTRGDGVIGEDVTPNVRVIDDIPKTLKGDNWPEIIEIRGE 202 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 VY++K+DF ALN +K +ANPRNAA+G LR+L+P +IT R L F HG G+ + Sbjct: 203 VYMAKSDFAALNARQTEENKKLFANPRNAAAGSLRQLDP-NITARRSLRFLAHGWGEATS 261 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + A QY M++ + G V+N + +A+ ++ +Y ++++ R+ L +DIDG+VYK+D+ Sbjct: 262 LPADTQYGMMKVIESYGLSVSNLLARADNIGQMLDFYQKIEAERADLDFDIDGVVYKLDQ 321 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q++ G AR+PR+ ++HKF ++A T LLDI+IQ+GRTG+LTPVA+LEPV +GG ++ Sbjct: 322 LDWQQRFGFSARAPRFALAHKFPAEKAQTTLLDIEIQVGRTGVLTPVAKLEPVTVGGVVV 381 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ++ATLHN D I+ L +R DRVLV+RAG+VIP++V+ + + D + Sbjct: 382 SSATLHNSDEIERL-----------GVRPEDRVLVQRAGDVIPQIVENLTPD--VDRPIW 428 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP+C S R+ G++ A RCTGGL C AQ++ERL HFVSR AF I+GLGK Sbjct: 429 HFPHRCPVCDSVARRE----EGEV--AWRCTGGLICPAQRVERLCHFVSRTAFEIDGLGK 482 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ FF + I PADIF L +++Q + G+G++SV NL +I+KRR + Sbjct: 483 SHIESFFADK----LIETPADIFRLFQKRQLLIER----EGWGELSVDNLISAIDKRRKV 534 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNF------AQEINNIIAHNND--------- 593 +RF+F+LGIRHVGA AR LAK Y ++ NF A + I+ +++ Sbjct: 535 PFDRFLFALGIRHVGAVTARDLAKSYQTWDNFKAAIDEAAHLRTILQPSSEESEEKYQKR 594 Query: 594 ---DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 + +S +P +G I +++++F+ N V LL+EV E SS + K Sbjct: 595 VDKELISFFHIPNMGGKIIRSLLDFFAETHNSDVVSDLLQEVQIEPLYFEL-ASSPLSGK 653 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +VFTG+LQKI R +A+ LGA V++ +S+KT++++ G+ GSKL KA++L + I++ Sbjct: 654 IIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELDISIID 713 Query: 711 EEQF 714 E+++ Sbjct: 714 EDRW 717 >gi|220920535|ref|YP_002495836.1| DNA ligase, NAD-dependent [Methylobacterium nodulans ORS 2060] gi|254781366|sp|B8ICE5|DNLJ_METNO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219945141|gb|ACL55533.1| DNA ligase, NAD-dependent [Methylobacterium nodulans ORS 2060] Length = 829 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 272/644 (42%), Positives = 379/644 (58%), Gaps = 56/644 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E ++ QAR+ SL EI+ HD Y+ PII D+EYDAL+RR +AI FP+LA Sbjct: 10 PVEEMTAAQAREAHESLSAEIAEHDRRYHGEDAPIISDAEYDALRRRLEAIEERFPELAG 69 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + +G + + KV H++P LSL + E++ +F+ R+ RF + Sbjct: 70 T---GAASVSVGAKASDKFAKVRHAVPMLSLGNAFAEEEITEFVERVRRFLGLPASEPLA 126 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 FT EPKIDG +++RYE G+ V AA RGDG GEDV+A +R I IP L+ + +PEI E Sbjct: 127 FTAEPKIDGLSLSLRYEGGRLVTAATRGDGEVGEDVTANVRTIREIPHELAGDDVPEICE 186 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 VRGEVY+S DF A+N GR +ANPRNAA+G LR+L+P +R L FF + G+ Sbjct: 187 VRGEVYLSHADFAAINARQEEAGRPLFANPRNAAAGSLRQLDPGITASRPLRFFAYAAGE 246 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A+ Q ++ R G PVN ++ + ++++Y +++ R+ L YDIDG+VYK Sbjct: 247 MSSWPAETQSGLIGAFRRFGLPVNPRTKRCTSVAEMLAHYRAIETERAELGYDIDGVVYK 306 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VDEF+LQ++LG AR+PRW ++HKF ++A T + I+I +GRTG L P+ARL+PV +GG Sbjct: 307 VDEFALQRRLGFVARAPRWALAHKFPAQRAVTVIEAIEINVGRTGSLNPLARLKPVTVGG 366 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG------------------GRDIRVGDRVLVKRAG 407 +++NATLHNEDYI+G+DA G +R G D+RVGD V+V RAG Sbjct: 367 VVVSNATLHNEDYIRGIDADGNTIRSGINIWDGFRLREDVDLRQGSDVRVGDTVVVLRAG 426 Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 +VIPKV D+++ R DA P++FP CP C S VR NP+TGKL + RCTGGL C AQ Sbjct: 427 DVIPKVADVVLERRPADAVPYAFPETCPACGSHAVRAYNPRTGKLDSVRRCTGGLICPAQ 486 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQ 517 ERL+HFVSR+AF+IEG G+ + F+ A +R PAD+F L RRQ Sbjct: 487 GQERLRHFVSRNAFDIEGFGETYIATLFE----AGLVRQPADLFRLDFEPLKAAIVARRQ 542 Query: 518 QTSTTKIENILGFG---------------DVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 S E L G D ++ NL ++ RR I L RFIF+LGI V Sbjct: 543 ALSA---ERALAAGKTPEAKKAKPKANEEDKAIHNLLAAVEARRTIPLNRFIFALGIEQV 599 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIA-HNNDDWLSLIRVPLVG 605 G A++LAK++ + + A DW+ L +P VG Sbjct: 600 GEATAKALAKHFPDMPALMEGVRAAAACRPGPDWIELASLPRVG 643 Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 76/120 (63%), Gaps = 9/120 (7%) Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQ 659 +G + +++EF+ N+ AVEALL+EV R E+ ++ + +VFTG+L+ Sbjct: 713 IGAVTTASLIEFFSEAHNVEAVEALLREV-----RTERAGTPAAAAVFSGQTVVFTGSLE 767 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ R +A+ +LGA VS +S KTD+++ G GSKL+ A++ GV++++E ++L +++ Sbjct: 768 RMTRSEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAEKHGVRVISEAEWLAMVE 827 >gi|162148970|ref|YP_001603431.1| DNA ligase [Gluconacetobacter diazotrophicus PAl 5] gi|190359260|sp|A9H0L6|DNLJ_GLUDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161787547|emb|CAP57143.1| putative DNA ligase [Gluconacetobacter diazotrophicus PAl 5] Length = 695 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 284/709 (40%), Positives = 420/709 (59%), Gaps = 36/709 (5%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ QA EL L Q+I D YY+ P + D+EYDAL++R AI FPDL R++ P Sbjct: 6 LTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQRNLAIEARFPDLRRADSP 65 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--IFFT 129 + + G + + + H +P LSL+ ++ ED F+TR RF DD + + F Sbjct: 66 S---LHVSGAPSAAFGRHRHLVPMLSLDNVFGREDFESFVTRAARFLGLNDDQARALRFV 122 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 EPKIDG I++ YE G+FV RGDG GEDV+A +R + +P L P +IE+RG Sbjct: 123 AEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDVPLRLKGPAPALIEIRG 182 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247 EV++SK FL++N G+KP+ANPRNAA+G LR+L+P +IT R L+ F + G +S Sbjct: 183 EVFLSKPAFLSINAAQAEAGQKPFANPRNAAAGSLRQLDP-NITARRPLSLFAYAQGFSS 241 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A ++ L+++R GF VN + ++ + + RS L YDIDG+VYKVD Sbjct: 242 DRVADTHWDYLERLRQWGFTVNPLSCVVESAEAAEAFMDRIARERSGLEYDIDGVVYKVD 301 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG R+PRW I+ KF +QA TRL IDIQ+GRTG LTPVA LEPVN+GG + Sbjct: 302 DLALQDRLGFVGRAPRWAIAWKFPAEQAITRLTRIDIQVGRTGALTPVAILEPVNVGGVI 361 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV--NERHPDA 425 +T ATLHNED I +D+RVGD V ++RAG+VIP+++ ++ + P Sbjct: 362 VTRATLHNEDEI-----------ARKDVRVGDLVQIQRAGDVIPQILGVVPPGADAPPRG 410 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F FP CPIC +R R G++V RCTGGL C AQ +ERL HFVSRDAF+I+G Sbjct: 411 EAFIFPHTCPICGARAER----PPGEVV--WRCTGGLTCPAQVVERLIHFVSRDAFDIDG 464 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ + F ++ PADIF L + T+ G+G VS NL S+ R Sbjct: 465 LGERTITEFHADG----LLKTPADIFRLPDHEADIATR----EGWGTVSARNLTASVRAR 516 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + I L RFI++LGIR +G AR LA++Y SY ++ +++ +D+ L+L + +G Sbjct: 517 QTIPLARFIYALGIRRIGTSNARLLARHYGSYTHWREQMLRATTIGSDERLALGSITGIG 576 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 IA + F+ N+ ++ L ++ +I + + K +VFTGTL + R + Sbjct: 577 GAIADELAAFFMEAHNLETLDDLTAMLT-AIEDEDLPAQGHLSGKTVVFTGTLTTMTRPE 635 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 A+ +LGA V+ +S+KTD++++G + GSK KA +LG+ ++EE + Sbjct: 636 AKAIAERLGARVTDSVSKKTDLVVLGADAGSKARKAAELGIDTLDEEGW 684 >gi|99081239|ref|YP_613393.1| DNA ligase, NAD-dependent [Ruegeria sp. TM1040] gi|122984289|sp|Q1GGT5|DNLJ_SILST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|99037519|gb|ABF64131.1| DNA ligase NAD-dependent [Ruegeria sp. TM1040] Length = 739 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 294/749 (39%), Positives = 428/749 (57%), Gaps = 61/749 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR E +L+ +I D Y+Q P + D++YD LKRR A+A AFP LA+ + Sbjct: 6 ARAEFEALQTKIEKADHDYHQKDAPTLSDADYDRLKRRYLALADAFPILAKD---GTRVA 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G KVTH+ +SL + +D+ F + R+ + + FT EPKIDG Sbjct: 63 SVGAPAASGFGKVTHAQRMMSLGNAFEDQDVEDFAVGLRRYLGLSSEAPLAFTAEPKIDG 122 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +++RYE GK V AA RGDG GE+V+ R I IP+ +S PE++EVRGEVY+S Sbjct: 123 LSLSLRYEAGKLVQAATRGDGAVGENVTENARTISDIPQEIS-GAPEVLEVRGEVYMSHA 181 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAKGQ 254 DF ALN G K +ANPRNAA+G LR+L+ +ITR L FF + G+ SE A+ Q Sbjct: 182 DFEALNARHAETGGKIFANPRNAAAGSLRQLD-AEITRARPLRFFAYSWGELSEPLAETQ 240 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + ++++ LGF N R ++++Y+ ++ R+ L YDIDG+VYKV++ SLQ++ Sbjct: 241 IDAIERLASLGFQTNPLTRCCEQISELLAHYHAIEEQRADLGYDIDGVVYKVNDLSLQER 300 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL PV +GG +++NATLH Sbjct: 301 LGFRSTTPRWAIAHKFPAELAWTHLEGIDIQVGRTGALSPVARLHPVTVGGVVVSNATLH 360 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NEDYI GLD+ G +RGG+DIRVGD V + RAG+VIPKV D+ ++ R + ++FP+ C Sbjct: 361 NEDYIAGLDSKGAPIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSRRPEGTERYAFPTRC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S VR+ A RC+GGL C AQ +E+LKHFVSR AF+IEGLG +Q++ F Sbjct: 421 PRCDSPAVREEGD------AVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQVEQF 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ PADIF LQ+R + +++N G+G+ S + L+ +I +R I R I Sbjct: 475 HSDG----WVKEPADIFELQQRYGSGLQQLKNREGWGEKSASALFAAIEDKRRIEFARLI 530 Query: 555 FSLGIRHVGAEIARSLAKYYLSY------------------------------------- 577 F LGIRHVG A+ LA ++ ++ Sbjct: 531 FGLGIRHVGEVAAKDLALHFRTWSALAEAADLARAAALAHRAADEAEIVERQEAQASARR 590 Query: 578 ------QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +N A + + W LI V +G +A ++ + + NP A + L+ Sbjct: 591 AKISEARNAAVATCAVAPDSQAAWDDLISVDGLGPTVALSLSDAFANPEERAAFDRLIAH 650 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + I S + K +VFTGTL+K+ R +A+ LGA VS +S+KTDI++ G Sbjct: 651 LE-IIEPDAPADDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDILVAG 709 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GSK KA +LG++ ++E+ +L L+ Q Sbjct: 710 PGAGSKAAKAAELGIQTLDEDGWLDLIGQ 738 >gi|87199755|ref|YP_497012.1| DNA ligase, NAD-dependent [Novosphingobium aromaticivorans DSM 12444] gi|123763512|sp|Q2G7J5|DNLJ_NOVAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|87135436|gb|ABD26178.1| DNA ligase, NAD-dependent [Novosphingobium aromaticivorans DSM 12444] Length = 721 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 291/746 (39%), Positives = 425/746 (56%), Gaps = 67/746 (8%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 AL+ +A EL L ++I+ H+ Y+ P I D+EYDAL RR + AFP L R Sbjct: 5 ALTEAEAANELMRLARQIAKHNRLYHAEDSPEITDAEYDALVRRNAELEAAFPHLIR--- 61 Query: 71 PNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P +IG E+ S L KV H + +SL+ + E++ +F+ R+ RF +D + T Sbjct: 62 PDSPSAQIGHEIAASPLGKVQHEVRMMSLDNAFTDEEVEEFVARVRRFLALPEDAEVVMT 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEII 185 E KIDG ++RYE G+ V AA RGDG GEDV+A + IP IP+ L +IP + Sbjct: 122 AEDKIDGLSCSLRYENGRLVRAATRGDGQVGEDVTANVAHIPDIPQELKAAGLFDIPAVF 181 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 E+RGEVY++K+DFLALN G K +ANPRN A+G LR+ + + +R L F HG G Sbjct: 182 EIRGEVYMAKDDFLALNARQAEAGEKIFANPRNGAAGSLRQKDASVTASRPLRFLAHGWG 241 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 SE+ A Q+EM++K+ G PV+ + + ++ +V++Y ++ R++LPYDIDG+VY Sbjct: 242 AASEVPAATQFEMMRKIADWGVPVSPLLVRCSSAAEMVAHYRDIGEKRASLPYDIDGVVY 301 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD Q +LG A++PRW I+HKF ++A T L IDIQ+GRTG LTPV RL+PV +G Sbjct: 302 KVDRLDWQDRLGFVAKAPRWGIAHKFPAERAETTLDAIDIQVGRTGKLTPVGRLKPVLVG 361 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TN TLHN D I G +RVGDR++++RAG+VIP+VV+ + E D Sbjct: 362 GVTVTNVTLHNRDEI-----------GRLGLRVGDRIVLQRAGDVIPQVVENLTREEPRD 410 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P+ FP CP C S V + G++ RCTGGL C AQ++ERLKHFVSR A +IE Sbjct: 411 --PYHFPDHCPECGSEAVAE----EGEVDV--RCTGGLICPAQRVERLKHFVSRAALDIE 462 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ + FF+ + PADIF L++R+ ++I G+ D SV NL +I Sbjct: 463 GLGEKTIIEFFQ----LGWLESPADIFRLRKRR----SEIVGREGWKDKSVDNLLAAIEA 514 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ---------------------- 582 +R R +F LGIRHVGA AR L K +++ + Sbjct: 515 KRQPDAARLLFGLGIRHVGAVTARDLMKRFVTLPALREAARQASSAAREGEPANADGAYD 574 Query: 583 --------EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 + A +D L+ + VG ++ +A+ +F+ P NI E LL EVSP Sbjct: 575 PATVTPDSDTAGAEAGRSDALADLLSIDGVGPVVVEALGDFFHEPHNIAVWEDLLSEVSP 634 Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 E S + K +VFTG L+ + R +A+ LGA + +S KTD+++ G Sbjct: 635 PPYVVETK-DSAVAGKTIVFTGKLETMSRDEAKAQAEALGARTAGSVSAKTDLVVAGPGA 693 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GSKL++A LG+ +++E + +++Q Sbjct: 694 GSKLKQAAALGIDVIDEAAWAEIVRQ 719 >gi|209545276|ref|YP_002277505.1| NAD-dependent DNA ligase [Gluconacetobacter diazotrophicus PAl 5] gi|209532953|gb|ACI52890.1| DNA ligase, NAD-dependent [Gluconacetobacter diazotrophicus PAl 5] Length = 708 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 286/716 (39%), Positives = 424/716 (59%), Gaps = 37/716 (5%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 +L P E L+ QA EL L Q+I D YY+ P + D+EYDAL++R AI FPD Sbjct: 13 RLDPSE-LTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQRNLAIEARFPD 71 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L R++ P+ + G + + + H +P LSL+ ++ ED F+TR RF DD Sbjct: 72 LRRADSPS---LHVSGAPSAAFGRHRHLVPMLSLDNVFGREDFESFVTRAARFLGLNDDQ 128 Query: 125 S--IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 + + F EPKIDG I++ YE G+FV RGDG GEDV+A +R + +P L P Sbjct: 129 ARALRFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDVPLRLKGPAP 188 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFV 240 +IE+RGEV++SK FL++N G+KP+ANPRNAA+G LR+L+P +IT R L+ F Sbjct: 189 ALIEIRGEVFLSKPAFLSINAAQAEAGQKPFANPRNAAAGSLRQLDP-NITARRPLSLFA 247 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + G +S+ A ++ L+++R GF VN + ++ + + RS L YDID Sbjct: 248 YAQGFSSDRVADTHWDYLERLRQWGFTVNPLSCVVESAEAAEAFMDRIARERSGLEYDID 307 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKVD+ +LQ +LG R+PRW I+ KF +QA TRL I+IQ+GRTG LTPVA LEP Sbjct: 308 GVVYKVDDLALQDRLGFVGRAPRWAIAWKFPAEQAITRLTRINIQVGRTGALTPVAILEP 367 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV-- 418 VN+GG ++T ATLHNED I +D+RVGD V ++RAG+VIP+++ ++ Sbjct: 368 VNVGGVIVTRATLHNEDEI-----------ARKDVRVGDLVQIQRAGDVIPQILGVVPPG 416 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + P + F FP CPIC +R R G++V RCTGGL C AQ +ERL HFVSR Sbjct: 417 ADAPPRGEAFIFPHTCPICGARAER----PPGEVV--WRCTGGLTCPAQVVERLIHFVSR 470 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 DAF+I+GLG++ + F ++ PADIF L + T+ G+G VS NL Sbjct: 471 DAFDIDGLGERTITEFHADG----LLKTPADIFRLPDHEADIATR----EGWGTVSARNL 522 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 S+ R+ I L RFI++LGIR +G AR LA++Y SY ++ +++ +D+ L+L Sbjct: 523 TASVRARQTIPLARFIYALGIRRIGTSNARLLARHYGSYTHWREQMLRATTIGSDERLAL 582 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + +G IA + F+ N+ ++ L ++ +I + + K +VFTGTL Sbjct: 583 GSITGIGGAIADELAAFFMEAHNLETLDDLTAMLT-AIEDEDLPAQGHLSGKTVVFTGTL 641 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + R +A+ +LGA V+ +S+KTD++++G + GSK KA +LG+ ++EE + Sbjct: 642 TTMTRPEAKAIAERLGARVTDSVSKKTDLVVLGADAGSKARKAAELGIDTLDEEGW 697 >gi|163854038|ref|YP_001642081.1| DNA ligase, NAD-dependent [Methylobacterium extorquens PA1] gi|254781364|sp|A9VWA4|DNLJ_METEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|163665643|gb|ABY33010.1| DNA ligase, NAD-dependent [Methylobacterium extorquens PA1] Length = 814 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 260/621 (41%), Positives = 378/621 (60%), Gaps = 31/621 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +EALS + A+ + L + I + YY P + D+EYDAL++ +AI FP L + Sbjct: 10 VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + + +G + + KV H++P LSL + ED+ +F+ R+ RF + S+ F Sbjct: 70 TEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPAEESVAF 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEV 187 T EPKIDG +++RYE G+ V AA RGDG GE+V+A + IP LS NIPE++EV Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGENIPEVLEV 186 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S DF A+N A G+ +ANPRNAA+G LR+L+P +R L FF + G+ Sbjct: 187 RGEVYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE F Q +L++ R G PVN + + ++++Y +++ R+ L YDIDG+VYKV Sbjct: 247 SEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRTIEAERAGLGYDIDGVVYKV 306 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q++LG +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++ +R DA Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIEKRPADAV 426 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP C SR VR+LNP+T KL A RCTGGL C AQ +ERLKHFVSR+ F++EG Sbjct: 427 PYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 486 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTK-----------IE 525 G+ ++ F+ A ++ PAD+F L+ RR+ S + + Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARRETLSAQRRSEGEPAPKKPTK 542 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 D ++ NL S++ RR I L RF+F+LGI +G A++LAK + + + Sbjct: 543 KKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMPSLMAALE 602 Query: 586 NII-AHNNDDWLSLIRVPLVG 605 DWL L +P +G Sbjct: 603 AATREQAGRDWLELSALPRIG 623 Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 73/117 (62%), Gaps = 1/117 (0%) Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G + ++++F+ P N AV ALL+EV + ++ K +VFTG+L+K+ R Sbjct: 698 IGPVATDSLIQFFSEPHNDAAVRALLEEVG-TEPLATTTSAAAFAGKTVVFTGSLEKMTR 756 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A+ +LGA VS +S KTD+++ G GSKL+ A++ GVK+++E+ +L +L + Sbjct: 757 SEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAE 813 >gi|90424785|ref|YP_533155.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB18] gi|123275077|sp|Q211V0|DNLJ_RHOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|90106799|gb|ABD88836.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB18] Length = 795 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 292/799 (36%), Positives = 427/799 (53%), Gaps = 115/799 (14%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ LS +A+ EL L EI H++ YYQ P I D+EYDAL+ R +AI FP+L S Sbjct: 12 LDTLSKAKAKVELKRLSLEIERHNNAYYQDDAPKISDAEYDALRHRVEAIEAKFPELVSS 71 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P K+G KV H++P LSL ++ +++ +F+TR+ RF + + Sbjct: 72 DSPT---QKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLTRVRRFLKLDAEQIPAI 128 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEV 187 EPKIDG +++RYE GK V AA RGDG +GEDV+A +R I IP L++ P E+ Sbjct: 129 VAEPKIDGLSLSLRYEHGKLVRAATRGDGFTGEDVTANVRTIKDIPHALAVAEPPAACEL 188 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKT 246 RGEVY+ K+DFLALN G P+ANPRN+A+G LR+ + +R L FF + G+ Sbjct: 189 RGEVYMLKSDFLALNQRQETAGEPPFANPRNSAAGSLRQKDVAITASRPLKFFAYAWGEF 248 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S++ QY ML ++ GF VN + + +++Y ++ R+TLPYDIDG+VYKV Sbjct: 249 SDLPEATQYGMLGWLKRAGFTVNPLITLCKSVDDALAFYRKIGEERATLPYDIDGVVYKV 308 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D Q++LG R+PRW I+HKFA +QA+T L I+IQ+GRTG LTPVARL PV +GG Sbjct: 309 DRLDWQERLGFAGRAPRWAIAHKFAAEQATTILNGIEIQVGRTGALTPVARLAPVTVGGV 368 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NATLHNEDYIK L DI +GD V+V+RAG+VIP++V ++ ++R DA+ Sbjct: 369 VVQNATLHNEDYIKSL-----------DIHIGDTVVVQRAGDVIPQIVSVVRDKRPEDAE 417 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP FCP C S VRD + A RCTGGL C AQ +ERL+HFVSR AF+I G Sbjct: 418 PYEFPKFCPACGSHAVRDEDEGE----AVRRCTGGLICPAQAIERLRHFVSRGAFDIAGF 473 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ-----------RRQQTSTTKIENILGFGDVS- 534 G+ ++ ++ +R PADIF L R++++ T+ E G S Sbjct: 474 GETYVELLYEEG----LVRNPADIFALHSKVDELKAALFRKRESLATQREEKTGKKRKSS 529 Query: 535 ----------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 V NL +I+ RR ++ RFIF LGIRHVG +++L +++ + F + Sbjct: 530 LSEEKRQYTDVENLLAAIDARRTVAFNRFIFGLGIRHVGEVTSKALVRHFADVKAFLDGV 589 Query: 585 N-NIIAHNNDDWLSLIRVPLVGDIIAQAIVEF--------------------------YQ 617 + +A WL L V +G+I + ++E Y Sbjct: 590 DAAALARPGPAWLDLKNVRYIGEITLERLLEIQGGADTNEERQGFQPDARQRASLLSHYG 649 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEI--------------ENKKLVFTGTLQKIQ- 662 N I + +P + SEI N + V T + ++Q Sbjct: 650 NEEKIAGALQAARSEAPGPAFQQLANDSEIGEVATQSLIDFFEETNNRQVVTALMDQVQV 709 Query: 663 ---------------------------RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 R +A+ +LGA V++ +S KTD+++ G + G Sbjct: 710 ERPAAASAKSPISGKIVVFTGALERTTRDEAKAIAERLGAKVASSVSSKTDLVVAGPSAG 769 Query: 696 SKLEKAQQLGVKIMNEEQF 714 SKL AQ+ GVK++ EE++ Sbjct: 770 SKLRDAQKFGVKVLTEEEW 788 >gi|84500836|ref|ZP_00999071.1| DNA ligase, NAD-dependent [Oceanicola batsensis HTCC2597] gi|84390903|gb|EAQ03321.1| DNA ligase, NAD-dependent [Oceanicola batsensis HTCC2597] Length = 626 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 270/637 (42%), Positives = 395/637 (62%), Gaps = 15/637 (2%) Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 + K+TH++ +SL ++ D+ +F RI + D + +T EPKIDG +++RY Sbjct: 1 MGFGKITHAVRMMSLANAFDDADVAEFDARIRSYLNLAADAPLAYTAEPKIDGLSLSLRY 60 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 E G+ V AA RGDG GE+V+A R I IP V PE++EVRGEVY+S DF ALN Sbjct: 61 ENGRLVQAATRGDGEVGENVTANARTIDDIP-VEVTGAPEVMEVRGEVYMSHADFAALNA 119 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAKGQYEMLQKM 261 G K +ANPRNAA+G LR+L+ ITR L FF + G S A Q + ++++ Sbjct: 120 RQAERGGKTFANPRNAAAGSLRQLD-AQITRARPLRFFAYSWGDLSAPLAATQTQAIERL 178 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 R LGF N R+ + ++ +Y ++ R+TL YDIDG+VYKVD+ +LQ +LG R+ + Sbjct: 179 RRLGFRTNPLTRRCDGPQDMLDHYRSIEEQRATLGYDIDGVVYKVDDLALQNRLGSRSTT 238 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++HKF + A TRL IDIQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G Sbjct: 239 PRWALAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAG 298 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 D+ G+ +RGG+DIR+GD V V RAG+VIPKV D+ +++R DA+P+ FP+ CP C S Sbjct: 299 RDSRGEEIRGGKDIRIGDWVQVYRAGDVIPKVADVDLSKRPDDAEPYVFPTKCPECGSDA 358 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 +R+ A RCTGG+ C AQ +E+LKHFVSR AF+IEGLG +Q++ F+ Sbjct: 359 LREPGD------AVRRCTGGVVCPAQAVEKLKHFVSRAAFDIEGLGARQVEAFYTD---- 408 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I PA+IFTL+ R ++N G+G+ S TNL+ +I+++R I L R +F+LGIRH Sbjct: 409 GWITEPAEIFTLEERYGRGLRALKNREGWGEKSATNLFRAIDEKRRIPLSRLLFALGIRH 468 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG + +A +Y ++ +E A L + VG+++A ++ + NP Sbjct: 469 VGESASALIANHYGTWDAL-EEAMVAAAEPGQAREDLTGIDGVGEVMATSLTSAFANPAE 527 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 +++ L+ + R S + K +VFTGTL+K+ R +A+ LGA VS + Sbjct: 528 RASMDRLVAHLDVQESRRAVAADSPVAGKTVVFTGTLEKMTRAEAKARAESLGAKVSGSV 587 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S KTD+++ G GSK +KA +LGV+ M+E+ +L L+ Sbjct: 588 SAKTDLLVAGPGAGSKAKKAAELGVETMDEDGWLALI 624 >gi|326387612|ref|ZP_08209218.1| DNA ligase, NAD-dependent [Novosphingobium nitrogenifigens DSM 19370] gi|326207658|gb|EGD58469.1| DNA ligase, NAD-dependent [Novosphingobium nitrogenifigens DSM 19370] Length = 687 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 285/710 (40%), Positives = 417/710 (58%), Gaps = 33/710 (4%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + I+A++ A EL L ++I+YHD Y+ P I D+EYDAL RR I AFP L Sbjct: 1 MTIDAMTEADAANELMRLARQIAYHDRLYHTLDTPEIADAEYDALVRRNAEIEAAFPHLI 60 Query: 67 RSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R++ P+ K+G ++ S L KVTH + +SL+ + E++ +F R+ RF + Sbjct: 61 RADSPS---RKVGHDVAASPLSKVTHEVRMMSLDNAFTDEEVEEFAARVRRFLALPAEAE 117 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + T E KIDG ++RYE G+ V AA RGDG GEDV+A + IP IP+ LS ++PE+ Sbjct: 118 VAMTAEDKIDGLSCSLRYEHGRLVRAATRGDGQVGEDVTANVAFIPDIPQHLSGDVPEVF 177 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 E+RGEVY++K DF ALN G K +ANPRNAA+G LR+ + + +R L F HG G Sbjct: 178 EIRGEVYMAKADFAALNVAQEEKGEKRFANPRNAAAGSLRQKDASVTASRPLRFLAHGWG 237 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 S + A+ QY+++Q + G PV+ + + T ++++Y +++ R LPYDIDG+VY Sbjct: 238 AHSGLPAQTQYDVMQVIAGWGVPVSPLLVRCATTADMLAHYRAIQAQRPDLPYDIDGVVY 297 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD Q++LG A++PRW ++HKF ++A T + ID+Q+GRTG LTPV RL PV +G Sbjct: 298 KVDRLDWQERLGFVAKAPRWGMAHKFPAERAETVVEAIDVQVGRTGKLTPVGRLRPVLVG 357 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +TN TLHN D I L +RVGDRV+++RAG+VIP+VVD + E + Sbjct: 358 GVTVTNVTLHNRDEIARL-----------GVRVGDRVVLQRAGDVIPQVVDNLTREEARE 406 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A + FP CP C S V + G++ RCTGGL C AQ+ ERLKHFVSR A +I+ Sbjct: 407 A--YVFPDHCPECGSEAV----AEEGEVDV--RCTGGLICPAQRTERLKHFVSRAALDID 458 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ + FF + PADIF L+ R+ I G+ D SV NL +I Sbjct: 459 GLGEKTIVEFFA----LGWLESPADIFRLKNRR----ADILGREGWKDKSVENLLMAIEA 510 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RR R +F+LGIRHVG AR L K +++ + A + D L+ + V Sbjct: 511 RRAPDAARLLFALGIRHVGQVTARDLMKRFVTLPDLRAVAERAHAGDEDARAELLGIDGV 570 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G ++ +A+ EF+ P N + LL E+SP E +S + K +VFTG L+ + R Sbjct: 571 GPVVVEALGEFFHEPHNRAVWDDLLSELSPPPYIVETR-ASVVAGKTVVFTGKLETMSRD 629 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +A+ LGA + +S KTD+++ G GSKL++A LG+++++E + Sbjct: 630 EAKAQAEALGARAAGSVSAKTDLVVAGPGAGSKLKQAAALGIEVIDEAAW 679 >gi|240141492|ref|YP_002965972.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1] gi|240011469|gb|ACS42695.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1] Length = 814 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 259/621 (41%), Positives = 378/621 (60%), Gaps = 31/621 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +EALS + A+ + L + I + YY P + D+EYDAL++ +AI FP L + Sbjct: 10 VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + + +G + + KV H++P LSL + ED+ +F+ R+ RF + ++ F Sbjct: 70 TEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPAEEAVAF 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEV 187 T EPKIDG +++RYE G+ V AA RGDG GE+V+A + IP LS NIPE++EV Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGENIPEVLEV 186 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S DF A+N A G+ +ANPRNAA+G LR+L+P +R L FF + G+ Sbjct: 187 RGEVYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE F Q +L++ R G PVN + + ++++Y +++ R+ L YDIDG+VYKV Sbjct: 247 SEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRTIEAERAGLGYDIDGVVYKV 306 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q++LG +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++++R DA Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIDKRPADAV 426 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP C SR VR+LNP+T KL A RCTGGL C AQ +ERLKHFVSR+ F++EG Sbjct: 427 PYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 486 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTK-----------IE 525 G+ ++ F+ A ++ PAD+F L+ RR+ S + + Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEPAPKKPTK 542 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 D ++ NL S++ RR I L RF+F+LGI +G A++LAK + + Sbjct: 543 KKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMPALMAALA 602 Query: 586 NII-AHNNDDWLSLIRVPLVG 605 DWL L +P +G Sbjct: 603 AATREQAGQDWLELSALPRIG 623 Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 73/117 (62%), Gaps = 1/117 (0%) Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G + ++++F+ P N AV ALL+EV + ++ K +VFTG+L+K+ R Sbjct: 698 IGPVATDSLIQFFSEPHNDAAVRALLEEVG-TEPLATTTSAAAFAGKTVVFTGSLEKMTR 756 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A+ +LGA VS +S KTD+++ G GSKL+ A++ GVK+++E+ +L +L + Sbjct: 757 SEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAE 813 >gi|254564006|ref|YP_003071101.1| DNA ligase [Methylobacterium extorquens DM4] gi|254271284|emb|CAX27296.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens DM4] Length = 814 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 257/621 (41%), Positives = 378/621 (60%), Gaps = 31/621 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +EALS + A+ + L + I + YY P + D+EYDAL++ +AI FP L + Sbjct: 10 VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + + +G + + KV H++P LSL + ED+ +F+ R+ RF + ++ F Sbjct: 70 TEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPAEEAVAF 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEV 187 T EPKIDG +++RYE G+ V AA RGDG GE+V+A + IP LS IPE++EV Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGEGIPEVLEV 186 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE+Y+S +DF A+N A G+ +ANPRNAA+G LR+L+P +R L FF + G+ Sbjct: 187 RGEIYLSHDDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE F Q +L++ R G PVN + + ++++Y +++ R+ L YDIDG+VYKV Sbjct: 247 SEPFNDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYDIDGVVYKV 306 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q++LG +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++++R DA Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVLDKRPADAV 426 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP C SR VR+LNP+T KL A RCTGGL C AQ +ERLKHFVSR+ F++EG Sbjct: 427 PYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 486 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTK-----------IE 525 G+ ++ F+ A ++ PAD+F L+ RR+ S + + Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRTEGEPAPKKPTK 542 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 D ++ NL S+ RR I L RF+F+LGI +G A++LAK + ++ Sbjct: 543 KKGEEEDKAIKNLLASLEARRKIPLNRFLFALGIPQIGESTAKALAKRFPDMPALMAALS 602 Query: 586 NIIAHN-NDDWLSLIRVPLVG 605 DWL L +P +G Sbjct: 603 AATQEQAGQDWLELSALPRIG 623 Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 73/117 (62%), Gaps = 5/117 (4%) Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G + ++++F+ P N AV ALL+EV P + ++ K +VFTG+L+K+ Sbjct: 698 IGPVATDSLIQFFSEPHNDAAVRALLEEVGTEPLVA---TTSAAAFAGKTVVFTGSLEKM 754 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ +LGA VS +S KTD+++ G GSKL+ A++ GVK+++E+ +L +L Sbjct: 755 TRSEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAEKHGVKVVSEDDWLAML 811 >gi|197105771|ref|YP_002131148.1| DNA ligase, NAD-dependent [Phenylobacterium zucineum HLK1] gi|254781386|sp|B4RFE9|DNLJ_PHEZH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|196479191|gb|ACG78719.1| DNA ligase, NAD-dependent [Phenylobacterium zucineum HLK1] Length = 692 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 287/713 (40%), Positives = 422/713 (59%), Gaps = 29/713 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E+L+ +A +EL+ L EI+ HD YY+ P I D+ YDAL+RR D + AFP L R Sbjct: 4 VESLTEAEAAEELTRLADEIAAHDIRYYREDAPTISDAAYDALRRRNDELEAAFPHLIRE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P +IG V H +P LSL+ ++ D +F R+ RF + D + + Sbjct: 64 ---NSPSLRIGAARAEQFAPVEHGVPMLSLDNAFSDADALEFDARVKRFLRL--DEEVAY 118 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEV 187 T EPKIDG +IRYE G+ V AA RGDG GEDV+A +R I IP+ L PE+IE+ Sbjct: 119 TAEPKIDGLSCSIRYENGRLVRAATRGDGRVGEDVTANVRTIGEIPQKLHGQAWPEVIEI 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+ +F ALN+ + G+K YANPRNAA+G LR+++P R L FF + G Sbjct: 179 RGEVYLGHAEFAALNEAAASAGQKTYANPRNAAAGSLRQIDPKITAQRPLRFFAYAWGFV 238 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S FA+ Q+E LQ ++ GF R G++ Y EM++ R L +DIDG+VYKV Sbjct: 239 SAPFAQTQWEALQALKAWGFRTTPQSRCVKGAEGLMEAYREMEAERPHLGFDIDGVVYKV 298 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D Q++LG +R+PRW I+ KF +QA T L IDIQ+GRTG LTPVARL PV +GG Sbjct: 299 DRLEWQQRLGFVSRAPRWGIARKFPAEQARTVLEAIDIQVGRTGALTPVARLTPVTVGGV 358 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++TNATLHN D I L D+RVGD V+++RAG+VIP+++ +I ER D+ Sbjct: 359 VVTNATLHNADEIARL-----------DVRVGDTVVLQRAGDVIPQILRVIPEERPKDSV 407 Query: 427 PFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ FP CP ++ VVR+ +G RC+G AC Q++ L HFVSR AF+IEG Sbjct: 408 PYDFPHVCPCPLRTEVVRETT-ASGAETVVRRCSGEFACPFQRINHLLHFVSRRAFDIEG 466 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++QL FF+ I+ PADIF L ++ ++ + G+ SV NL +I R Sbjct: 467 LGEKQLTAFFERG----WIKAPADIFRLHEKRD----ELLAMERMGETSVGNLLANIEAR 518 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I L+RFI+ LGIRH+G A +A+ Y + +F + ++ + A + + L + +G Sbjct: 519 RTIGLDRFIYGLGIRHIGETTATVMARGYGTAAHFLEAMDKVAARDPEAVEELDALDQIG 578 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + +A F+ N VE L +++ + + + + K +VFTG L+++ R + Sbjct: 579 GAVIEAAAAFFGEDHNRAMVEDLAGQLT-ILDAEKPKTDTAVAGKTVVFTGALERMTRDE 637 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ +LGA VS +S+KTDI++ G GSKL+ A +LG++++ E+++L ++ Sbjct: 638 AKAQAERLGAKVSGSVSKKTDIVVAGPGAGSKLKTAAELGIQVLTEDEWLEMV 690 >gi|148557620|ref|YP_001265202.1| DNA ligase, NAD-dependent [Sphingomonas wittichii RW1] gi|190359290|sp|A5VFJ8|DNLJ_SPHWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148502810|gb|ABQ71064.1| DNA ligase, NAD-dependent [Sphingomonas wittichii RW1] Length = 708 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 288/728 (39%), Positives = 422/728 (57%), Gaps = 62/728 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QA + L+ L EI+ H+ Y+ P I D++YDAL R A+ +P L R++ P+ Sbjct: 6 QAAERLAFLAAEIARHNALYHGEDAPEISDADYDALMRENAALEAEYPHLVRADSPS--- 62 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +G + L KV H+ P LSL+ + ED+ F+ R+ R+ + + T EPKID Sbjct: 63 KLVGAAPSGHLAKVAHAQPMLSLDNAFADEDVVDFVGRVRRYLSLGAEEPVALTAEPKID 122 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-----LNIPEIIEVRGE 190 G ++RYEKG V AA RGDG +GEDV+A +R I IP L + P++ E+RGE Sbjct: 123 GLSCSLRYEKGVLVLAATRGDGTTGEDVTANVRTIDDIPERLRGGDLLSSPPDVFEIRGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 VY++K DF ALN ++A P +ANPRNAA+G LR+ +P +R L F HG G Sbjct: 183 VYMAKADFAALNARLLAEAEDPAKARQFANPRNAAAGSLRQKDPGVTASRPLRFLAHGWG 242 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S + A Q ++ + G PV++ + + +S+Y +++ R+ LP+DIDG+VY Sbjct: 243 EVSALPADTQKGVMDAIAAWGLPVSDDFVRVDGAAQALSHYRAIEAKRADLPFDIDGVVY 302 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD QK+LG AR+PRW I+HKF ++A T L DIDIQ+GRTG LTPVARLEPV +G Sbjct: 303 KVDRLDWQKRLGFVARAPRWAIAHKFPAEKAQTLLKDIDIQVGRTGKLTPVARLEPVTVG 362 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHN D I G D+ GDRV+V+RAG+VIP++V+ + + D Sbjct: 363 GVVVTNATLHNADEI-----------GRLDVHPGDRVVVQRAGDVIPQIVENLSRDETRD 411 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P+ FP CP C S R+ G++ +RCTGGL C AQ++ERL+HFVSR A +IE Sbjct: 412 --PWPFPQTCPECGSAAERE----PGEV--DYRCTGGLICPAQRVERLRHFVSRHALDIE 463 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG ++ FF+ ++ PADIF L + + + + +VS NL +I+ Sbjct: 464 GLGLTHIESFFRD----GLVQSPADIFRLTKDILLTRER------WAEVSAGNLIAAIDA 513 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII---------------- 588 +R+ L+RF+F+LGIRHVG AR LA+ Y S++ I+ I Sbjct: 514 KRHPPLDRFLFALGIRHVGEVTARDLARRYRSWEGLKAMIDRTIEARDAAVQAIGETDEK 573 Query: 589 --AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 A + +++ P VG +A A+V+F+ P N AV LL ++ P+ HE +SE Sbjct: 574 FAARTAKELAAIVETPGVGPEVALALVDFFAEPHNADAVADLLSQLQPADVIHETR-ASE 632 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +VFTGTL+ + R +A+ LGA V+ +S KTD+++ G GSKL+KA LG+ Sbjct: 633 VSGKTVVFTGTLETMSRDEAKAQAEALGAKVAGSVSAKTDLVVAGPGAGSKLKKASDLGI 692 Query: 707 KIMNEEQF 714 + +E + Sbjct: 693 AVTDEAGW 700 >gi|332188479|ref|ZP_08390201.1| DNA ligase, NAD-dependent [Sphingomonas sp. S17] gi|332011491|gb|EGI53574.1| DNA ligase, NAD-dependent [Sphingomonas sp. S17] Length = 712 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 295/719 (41%), Positives = 420/719 (58%), Gaps = 58/719 (8%) Query: 26 QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85 +EI++H+ Y+ P I D++YDAL RR AI AFP L RS+ PN ++G Sbjct: 23 REIAHHNRLYHTEDAPEISDADYDALIRRNMAIEAAFPHLIRSDSPN---RQVGAAPAAH 79 Query: 86 LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145 L KV H+ P SL+ ++ E++ +FI R+ R+ + DD + T EPKIDG ++RY Sbjct: 80 LAKVAHARPMTSLDNAFSDEEVEEFIGRVRRYLKLPDDEPVTLTAEPKIDGLSCSLRYVD 139 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN--- 202 G+ V A RGDG GEDV+ +R I IP+ L P + EVRGEVY+SK DF ALN Sbjct: 140 GRLVQALTRGDGTIGEDVTENVRTIADIPQSLPAPAPTVFEVRGEVYMSKVDFTALNARL 199 Query: 203 -DEMIAVGR--KPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM 257 E G+ + +ANPRNAA+G LR+ NP IT R L F HG G+ SE+ A+ Q++M Sbjct: 200 AQEAAETGKEARQFANPRNAAAGSLRQKNPA-ITAGRPLRFLAHGWGEASEVPAETQFDM 258 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 ++ R GFP+ + ++ Y +++ R+ LP+DIDG+VYKVD Q +LG Sbjct: 259 VETWRRWGFPIAEAFARVPDAAAALAVYRTIEAQRADLPFDIDGVVYKVDRLDWQARLGI 318 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 R+PRW I+HKF ++A T L IDIQ+GRTG LTPVARLE V +GG ++TNATLHN D Sbjct: 319 VGRTPRWAIAHKFPAERAQTTLERIDIQVGRTGALTPVARLEAVTVGGVVVTNATLHNAD 378 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ L +R GDRV+++RAG+VIP++V+ + RH +PF FP CP C Sbjct: 379 EIERL-----------GVRPGDRVVLQRAGDVIPQIVENLT--RHVAREPFVFPDHCPEC 425 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S R G++V RCTGGL C AQ++ERL HFVSR AF+I GLG +++ FF+ Sbjct: 426 GSLATR----GEGEVVI--RCTGGLICPAQRVERLIHFVSRHAFDITGLGLVRVEEFFRD 479 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I PADIF L + ++ + ++ V L +I+ RR+ISL+RF+F+L Sbjct: 480 G----LIASPADIFRLAQHREALIQRER----MSELVVDKLLAAIDARRDISLDRFLFAL 531 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL------------------I 599 GIRHVG AR LA+ ++S F I+ + + +L I Sbjct: 532 GIRHVGEITARDLARRFVSMAGFRAMIDAALQVRAETVPALGEPERKFELRRQRAIVAAI 591 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 P +G +A A+++F+ N V+ LL EV+P+ H+ S++ K LVFTGTL+ Sbjct: 592 DTPQIGPEVADALLDFFAEEHNRDVVDDLLSEVTPADVVHQTR-ESDVSGKTLVFTGTLE 650 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A+ LGA VS +S KTD++I G GSKL+KAQ LG+ +++E + L+ Sbjct: 651 TLSRDEAKAQAEALGARVSGSVSAKTDLVIAGPGAGSKLKKAQDLGIPVIDEAAWNALV 709 >gi|188584367|ref|YP_001927812.1| DNA ligase, NAD-dependent [Methylobacterium populi BJ001] gi|254781367|sp|B1Z9P1|DNLJ_METPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|179347865|gb|ACB83277.1| DNA ligase, NAD-dependent [Methylobacterium populi BJ001] Length = 814 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 256/621 (41%), Positives = 377/621 (60%), Gaps = 31/621 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E+LS + A+ + L + I + YY P + D+EYDAL++ +AI FP L + Sbjct: 10 VESLSEDAAQARHAELSRAIERANHLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + + +G + + KV H++P LSL + ED+ +F+ R+ RF + + F Sbjct: 70 TEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLTAEEPVAF 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEV 187 T EPKIDG +++RYE G+ V AA RGDG GE+V+A + IP LS +IPE++EV Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVEDIPATLSGKDIPEVLEV 186 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+S DF +N A G+ +ANPRNAA+G LR+L+P +R L FF + G+ Sbjct: 187 RGEVYLSHEDFAGINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE F Q +L++ R G PVN + + ++++Y +++ R+ L YDIDG+VYKV Sbjct: 247 SEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYDIDGVVYKV 306 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q++LG +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV+D+++++R DA Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVMDVVLDKRPADAV 426 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP C SR VR+LNP+T KL A RCTGGL C AQ +ERLKHFVSR+ F++EG Sbjct: 427 PYVFPETCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 486 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTK-----------IE 525 G+ ++ F+ A ++ PAD+F L+ RR+ S + + Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEPAPKKPTK 542 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 D ++ NL S+ RR I+L RF+F+LGI +G A++LAK + + Sbjct: 543 KKGEEEDKAIKNLLASLEARRKIALNRFLFALGIPQIGESTAKALAKRFPDMPALMAALE 602 Query: 586 NII-AHNNDDWLSLIRVPLVG 605 DWL L +P +G Sbjct: 603 AATREQAGRDWLELSALPRIG 623 Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 73/117 (62%), Gaps = 1/117 (0%) Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G + ++++F+ P N AV ALL+EV + ++ K +VFTGTL+K+ R Sbjct: 698 IGPVATDSLIQFFSEPHNDAAVRALLEEVG-TEPLAATTSAAAFAGKTVVFTGTLEKMTR 756 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A+ +LGA VS +S KTD+++ G GSKL+ A++ GVK+++E+ +L +L + Sbjct: 757 SEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAERHGVKVVSEDDWLAMLAE 813 >gi|89069525|ref|ZP_01156869.1| DNA ligase, NAD-dependent [Oceanicola granulosus HTCC2516] gi|89044860|gb|EAR50950.1| DNA ligase, NAD-dependent [Oceanicola granulosus HTCC2516] Length = 739 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 290/726 (39%), Positives = 422/726 (58%), Gaps = 66/726 (9%) Query: 41 PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100 PI+ D+ YDALKRR A+ FP+L R++ P G ++G KVTH + LSL Sbjct: 30 PIMDDAAYDALKRRNAALEARFPELMRADSPTG---QVGAAPAAGFGKVTHRVRMLSLLN 86 Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160 + D+R F + R+ D + +T EPKIDG +++RYE G+ V AA RGDG +G Sbjct: 87 AFEEADIRDFDDGVRRYLGLAADAPLRYTAEPKIDGLSLSLRYEDGRLVQAATRGDGTTG 146 Query: 161 EDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220 E+V+ R I IP L P+++EVRGEVY+S DF ALN K +ANPRNAA Sbjct: 147 ENVTDNARTIDDIPDRLE-GAPDVLEVRGEVYMSHADFAALNARQSEAAGKTFANPRNAA 205 Query: 221 SGILRRLNPTDITRY--LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278 +G LR+L+P +ITR L FF + G+ S A+ Q ++++ LGF VN R + Sbjct: 206 AGSLRQLDP-EITRARPLRFFAYAWGELSAPLAETQMGAIERLGALGFQVNPLTRLCDGP 264 Query: 279 HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTR 338 ++++Y +++ R+TL YDIDG+VYKVD+ +LQ +LG R+ +PRW +HKF + A TR Sbjct: 265 DKMIAHYRAIEAQRATLGYDIDGVVYKVDDLALQSRLGFRSTTPRWATAHKFPAELAWTR 324 Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398 L I+IQ+GRTG L+PVARL PV +GG +++NATLHNEDYI G ASG +RGG+DIR G Sbjct: 325 LERIEIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAGRAASGDEIRGGKDIREG 384 Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458 D V V RAG+VIPKV D+ + +R DA P+ FP CP C S VR+ A RC Sbjct: 385 DWVQVYRAGDVIPKVADVDLAQRPADAAPYVFPETCPECGSEAVREEGD------AVRRC 438 Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518 TGGL C AQ +E+LKHFVSR AF+IEGLG +Q++ F+ E I PADIFTL+ R Sbjct: 439 TGGLVCPAQAVEKLKHFVSRAAFDIEGLGAKQVEQFYHDE----WITEPADIFTLRDRYG 494 Query: 519 TST-TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577 T+++N G+G+ S NL+D+I +RR I+L R +F+LGIRHVG A LA+++ ++ Sbjct: 495 PGKLTQLKNREGWGEKSAENLFDAIEERRTIALARLVFALGIRHVGEVAASDLARHFSTW 554 Query: 578 QNFAQEINNI-----------------------------IAHNND--------------D 594 + ++ +A D Sbjct: 555 EALVATVDAAAPAAHRVQAAEAALLAERAAARDEGRRARLAEVRDRVWAEPPLPEGARAA 614 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK--EVSPSIGRHEKNVSSEIENKKL 652 W ++ + +G +A+++V +++ L + P+ + S + K + Sbjct: 615 WDEIVGIEGIGATVARSLVLTMAQEAERASIDRLAAGLTIEPA---EQVATDSPVAGKTI 671 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTG+L+K+ R +A+ LGA VS +S KTD+++ G GSK +KA +LG++ ++E+ Sbjct: 672 VFTGSLEKMTRAEAKARAEALGAKVSGSVSAKTDLVVAGPGAGSKGKKAAELGIETIDED 731 Query: 713 QFLFLL 718 +L L+ Sbjct: 732 AWLALI 737 >gi|118581474|ref|YP_902724.1| DNA ligase, NAD-dependent [Pelobacter propionicus DSM 2379] gi|166216225|sp|A1ATJ6|DNLJ_PELPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118504184|gb|ABL00667.1| DNA ligase, NAD-dependent [Pelobacter propionicus DSM 2379] Length = 704 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 277/715 (38%), Positives = 422/715 (59%), Gaps = 44/715 (6%) Query: 21 LSSLEQEISYHDDCYYQYSKP--IILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L Q I++++ YY+ P I D EYD L + + FP+ + + P + Sbjct: 18 IQELRQLIAHNNRLYYENIPPRREIHDYEYDELFKELQELESRFPEF---QSADSPTQIV 74 Query: 79 GGEMNLSLFKVTHSIPTLSLEK---IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 GG ++ KV HS+P LS+E + ++R I + K D SI EPKID Sbjct: 75 GGSVSEGFKKVQHSVPMLSIENKPVTKMLSEVRSIIKEL-----KDDAISIDIVAEPKID 129 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +IRYEK + V AA RGDG GED++ + +I IP++L L+ PE+IE+RGEVY+S Sbjct: 130 GLSCSIRYEKHQLVRAATRGDGLEGEDITVNVHSISEIPKILPLDAPEVIEIRGEVYMSN 189 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 +DF + +G KP NPRNAA+G LR+L+P+ +R L FF + G+ S FAK Q Sbjct: 190 SDFKQYTAQQNKIGEKPPENPRNAAAGSLRQLDPSVTASRPLRFFAYAWGEISNSFAKSQ 249 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ LQ +R GF V + +R + + SY+ EM+ RS L + IDG+VYK++ SLQ++ Sbjct: 250 WDALQTLRGWGFKVCDDIRLLYSSDELNSYFEEMQERRSELDFTIDGIVYKLNSLSLQER 309 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +G+ R+PRW + KF ++ T L +I I +GR+G LTPVA L PV + G ++NATLH Sbjct: 310 VGQTNRAPRWAAAQKFPPEKRETLLQNITISVGRSGALTPVAELLPVRLLGTTVSNATLH 369 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D ++ +D R+ D ++V+RAG+VIP+VV +++ +R + PF FPS C Sbjct: 370 NQDEVEC-----------KDFRIDDTIVVQRAGDVIPQVVSVVIEKRLSGSIPFVFPSAC 418 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S+ VR+ P+ A +CTGGL C AQ LERLKHFVSRDAFNI+GLG++ ++ F Sbjct: 419 PVCGSKAVRE--PRE----AVWKCTGGLTCPAQSLERLKHFVSRDAFNIDGLGEKNIELF 472 Query: 495 FKSEDPAFSIRIPADIFTLQR--------RQQTSTTK-IENILGFGDVSVTNLYDSINKR 545 + + P DIF L+ +Q+ S K ++ G+G++S NL+ +I + Sbjct: 473 YNKG----LLASPVDIFRLEEILSPPLLWQQKPSEFKPLQEWDGWGELSANNLFRAIRTK 528 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + I+L RFI++LGI VG A+ LA Y+S N+ + ++ + LI + +G Sbjct: 529 QKITLYRFIYALGIPKVGEVTAKILADNYVSLDNWQSSMLKAAERESECYQHLISIDGIG 588 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++A IV F+ NI +++L +S +SS I K +VFTG L+K R Sbjct: 589 SVVADEIVSFFAEAHNIQVLDSLKNYLSVEDFTKPAIISSNISGKIVVFTGELEKRSRKA 648 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + GA V+ +SRKTDI+I G +PGSKL KAQ+LG+KI++E+++ L+ + Sbjct: 649 AKIEAEKFGAKVATDVSRKTDIVIAGTDPGSKLRKAQELGIKILSEDEWEHLINE 703 >gi|218532981|ref|YP_002423797.1| DNA ligase, NAD-dependent [Methylobacterium chloromethanicum CM4] gi|254781363|sp|B7KU78|DNLJ_METC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218525284|gb|ACK85869.1| DNA ligase, NAD-dependent [Methylobacterium chloromethanicum CM4] Length = 814 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 256/621 (41%), Positives = 375/621 (60%), Gaps = 31/621 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +EALS + A+ + L + I + YY P + D+EYDAL++ +AI FP L + Sbjct: 10 VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPALTGT 69 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + + +G + + KV H++P LSL + ED+ +F+ R+ RF + ++ F Sbjct: 70 TEASA---GVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPAEEAVAF 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEV 187 T EPKIDG +++RYE G+ V AA RGDG GE+V+A + IP LS IPE++EV Sbjct: 127 TAEPKIDGLSLSLRYEAGRLVTAATRGDGEVGENVTANALTVDDIPETLSGEGIPEVLEV 186 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE+Y+S DF A+N A G+ +ANPRNAA+G LR+L+P +R L FF + G+ Sbjct: 187 RGEIYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGEV 246 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE F Q +L++ R G PVN + + ++++Y +++ R+ L YDIDG+VYKV Sbjct: 247 SEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRAIEAERAGLGYDIDGVVYKV 306 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q++LG +R+PRW ++HKFA ++A T LL IDI +GRTG L P+ARL+PV +GG Sbjct: 307 DDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKPVTVGGV 366 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNE Y++G+ A G+ +R GRDIRVGD V+V RAG+VIPKV D+++ +R DA Sbjct: 367 VVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIEKRPADAV 426 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP C SR VR+LNP+T KL A RCTGGL C AQ +ERLKHFVSR+ ++EG Sbjct: 427 PYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGLDLEGF 486 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTK-----------IE 525 G+ ++ F+ A ++ PAD+F L+ RR+ S + + Sbjct: 487 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRTEGEPAPKKPTK 542 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 D ++ NL S++ RR I L RF+F+LGI +G A++LAK + + Sbjct: 543 KKGEEEDKAIKNLLASLDARRTIPLNRFLFALGIPQIGESTAKALAKRFPDMPALMAALA 602 Query: 586 NII-AHNNDDWLSLIRVPLVG 605 DWL L +P +G Sbjct: 603 AATREQAGRDWLELSALPRIG 623 Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 73/117 (62%), Gaps = 1/117 (0%) Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G + ++++F+ P N AV ALL+EV + ++ K +VFTG+L+K+ R Sbjct: 698 IGPVATDSLIQFFSEPHNDAAVRALLEEVG-TEPLAATTSAAAFAGKTVVFTGSLEKMTR 756 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A+ +LGA VS +S KTD+++ G GSKL+ A++ GVK+++E+ +L +L + Sbjct: 757 SEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAE 813 >gi|315498681|ref|YP_004087485.1| DNA ligase, nad-dependent [Asticcacaulis excentricus CB 48] gi|315416693|gb|ADU13334.1| DNA ligase, NAD-dependent [Asticcacaulis excentricus CB 48] Length = 697 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 290/708 (40%), Positives = 416/708 (58%), Gaps = 24/708 (3%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A+ + L EI +H D YY P + D+EYDAL++ A+ +PDL + P Sbjct: 7 DTAQTRHAQLSTEIKHHRDLYYNQEAPELTDAEYDALEQELRALEAQYPDLHTVDSPT-- 64 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G E++ V H +P LSL+ + ED+ F I RF + + + F +EPKI Sbjct: 65 -EQVGAEISSKFAPVQHGVPMLSLDNAFAPEDVADFEKSIRRFLRLPPEEELAFAVEPKI 123 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYI 193 DG ++ Y GK V AA RGDG +GED++ +R I +P VLS + PE IE+RGEVY Sbjct: 124 DGLSCSLLYVNGKLVRAATRGDGRTGEDITENVRTIKDVPHVLSGRDHPERIEIRGEVYY 183 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251 DF A+N + G K +ANPRNAASG LR+L+ T +R L FF + G+ S+ F Sbjct: 184 PLADFAAMNAKSAEEGGKVFANPRNAASGALRQLDATITASRPLRFFAYTWGEVSDPRFV 243 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E L K GF VN G++ Y ++ RS+L YDIDG+VYKVD Sbjct: 244 TTQTEALAKFHEWGFQVNPRSATTENSDGLLKIYEAIQRDRSSLGYDIDGVVYKVDRLDY 303 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +RSPRW I+HKF +QA T L IDIQ+GR G LTPVARLEPVN+GG +++N Sbjct: 304 QRRLGFVSRSPRWAIAHKFPAEQALTHLKAIDIQVGRIGTLTPVARLEPVNVGGVVVSNV 363 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I +DIR+GD V V+RAG+VIP++V + ++ER +P+ FP Sbjct: 364 TLHNADEI-----------ARKDIRIGDLVRVQRAGDVIPQIVGVELSERQEGTEPYVFP 412 Query: 432 SFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP ++ V R+LN K G+ A RC+G AC Q++E LK+ VSR +IEGLG++Q Sbjct: 413 TVCPCPLKTAVARELNLK-GEEGVARRCSGEHACPHQRVEYLKYVVSRKVLDIEGLGEKQ 471 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L F SE+ IR PADIFTL+ R +TS T + N G G+ S NL+ +I RR + L Sbjct: 472 LQKF--SEEGL--IREPADIFTLEARDKTSLTPLRNREGMGETSARNLFKAIEDRRQLPL 527 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +RFI +LG++ VG AR LA+ Y S F + + A + + +L + VG + Sbjct: 528 DRFIAALGVKGVGETTARLLARAYHSESTFRDAMIALAAGDEEVKAALDNMDQVGPSLVA 587 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 A++EF+ N N+ + ++S S + K +VFTGTL+K+ R +A+ Sbjct: 588 ALIEFFSNDHNVGIYMRFVAQLSVQDAEAVAG-DSAVSGKTVVFTGTLEKMTRDEAKAQA 646 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +LGA V+ +S KT I++ G GSKL+KA +LGV++M E+++L + Sbjct: 647 ERLGAKVAGSVSAKTHIVVAGPGAGSKLKKAAELGVQVMTEDEWLAFI 694 >gi|56696562|ref|YP_166919.1| DNA ligase, NAD-dependent [Ruegeria pomeroyi DSS-3] gi|81349987|sp|Q5LST6|DNLJ_SILPO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56678299|gb|AAV94965.1| DNA ligase, NAD-dependent [Ruegeria pomeroyi DSS-3] Length = 739 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 291/749 (38%), Positives = 431/749 (57%), Gaps = 61/749 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A +EL+ L ++ + Y+ P I D++YDALK+R I FP L R P+ P Sbjct: 5 EAAQELARLAGLLAQANLAYHTLDAPEISDADYDALKQRNAEIEARFPHLKR---PDSPS 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G KV+H++ +SL ++ D+ F I ++ + ++ +T EPKID Sbjct: 62 EQVGARPGEGFSKVSHAVRMMSLGNAFDDADVADFDRSIRKYLGLDVETALAYTAEPKID 121 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++RYE+G V AA RGDG GE+V+A R I IP + PE++EVRGEVY+S Sbjct: 122 GLSLSLRYEQGVLVQAATRGDGEVGENVTANARTIADIPARIE-GAPEVLEVRGEVYMSH 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAKG 253 DF ALN A G K +ANPRNAA+G LR+L+ ITR L FF + G+ SE A+ Sbjct: 181 ADFAALNTRQEAEGGKLFANPRNAAAGSLRQLDAA-ITRARPLRFFAYSWGELSEPLAET 239 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + ++++ LGF N R+ ++++Y ++++ R+TL YDIDG+VYK+D+ LQ Sbjct: 240 QMQAIERLAGLGFQTNPLTRRCADLDAMIAHYRDIEAQRATLGYDIDGVVYKLDDLGLQA 299 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG +++NATL Sbjct: 300 RLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNATL 359 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNEDYI G D+ G+ +R G+DIRVGD V V RAG+VIPK+ D+ +N+R A PF FP Sbjct: 360 HNEDYIAGRDSRGQEIRDGKDIRVGDWVQVYRAGDVIPKIADVDLNKRPEGANPFEFPEQ 419 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +R+ A RCTGG+ C AQ +E+LKHFVSR AF+IEGLG +Q++ Sbjct: 420 CPECGSPAIREEGD------AVRRCTGGVICPAQAVEKLKHFVSRAAFDIEGLGAKQVEQ 473 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F IR PADIF L+ R +++N G+G+ S TNL+ +I+ +R I L R Sbjct: 474 FHAD----GWIREPADIFELRSRYGEGLQQLKNREGWGEKSATNLFQAIDDKRRIPLARL 529 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN--------------------------- 586 IF+LGIRHVG A+ L+ +Y + A ++ Sbjct: 530 IFALGIRHVGEVGAKDLSLHYRDWDAMAAALDTARLAALAHRAADTAEEQERQQAQAEGR 589 Query: 587 ----------IIAHNN------DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 +IA W LI V +G + ++ + + N A + L Sbjct: 590 RARISDTRAAVIAAQEVPPEAAAAWADLIGVDGIGATLGLSLSDAFANGDERAAFDRLSA 649 Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 ++ I S + K +VFTG+L+K+ R +A+ LGA V+ +S+KTD+++ Sbjct: 650 HLT-VIPPDAPARDSPVAGKTVVFTGSLEKMTRAEAKARAEALGAKVAGSVSKKTDLLVA 708 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G GSKL+ A+ LG++ ++E+ +L L++ Sbjct: 709 GPGAGSKLKTAESLGIETLDEDGWLKLIE 737 >gi|85708859|ref|ZP_01039925.1| DNA ligase [Erythrobacter sp. NAP1] gi|85690393|gb|EAQ30396.1| DNA ligase [Erythrobacter sp. NAP1] Length = 698 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 274/707 (38%), Positives = 407/707 (57%), Gaps = 35/707 (4%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+ +S A EL L ++I++HD Y+ P I D EYDAL RR + AFP L R Sbjct: 13 PVSQMSEADAANELMRLAKQIAHHDRLYHADDDPEISDQEYDALVRRNRELEEAFPQLVR 72 Query: 68 SEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P+ ++G + S L KVTH + +SL+ +N E++ + RI R+ D + Sbjct: 73 EDSPS---KRVGHAVAASPLSKVTHEVRMMSLDNAFNREEVEDWTARIRRYLNLDADEEV 129 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 T E KIDG ++RYE GK + AA RGDG GEDV+ + I IP+ L +PE+ E Sbjct: 130 AITAEDKIDGLSCSLRYENGKLMRAATRGDGQVGEDVTPNVGYISDIPQELPDGVPEVFE 189 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S+ DF ALN G K +ANPRNAA+G LR+ + + R L F+ +G G Sbjct: 190 VRGEVYMSRADFAALNTAQEEAGGKLFANPRNAAAGSLRQKDASVTAKRPLKFWAYGWGA 249 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S++ + Q +M++ + GFP++ + + + ++++Y E+ R L Y+IDG+VYK Sbjct: 250 ASDVPCESQNDMMRMIESWGFPLSPFLTRTMSVDEMIAHYEEIGRQRPDLGYEIDGVVYK 309 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD Q++LG A++PRW ++HKF ++A T L IDIQ+GRTG LTPV RL PV +GG Sbjct: 310 VDRLDWQQRLGFVAKAPRWALAHKFPAEKAQTTLEAIDIQVGRTGKLTPVGRLAPVLVGG 369 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +TN TLHN D I+ L +R GDR++++RAG+VIP+VV+ + R + Sbjct: 370 VTVTNVTLHNRDEIERL-----------GVRPGDRIVIQRAGDVIPQVVENLT--RDEER 416 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +PF FP CP C S V + G++ RCTGGL C AQ+ +RL+HFVSR A +I+G Sbjct: 417 EPFVFPDHCPECDSEAV----AEEGEVDV--RCTGGLICPAQRTQRLEHFVSRKALDIDG 470 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 G + + FF + PADIF L+ R++ I + G+ D SV NL S+ R Sbjct: 471 FGSKTIAQFFA----LGWLESPADIFRLKDRRE----DILALEGWQDKSVDNLLASVENR 522 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R R +F LGIRHVG AR L K+ A + D L + +G Sbjct: 523 REPDAARLLFGLGIRHVGEVTARDLLKHVHELPALRTIAEKARAGDEDAASELTAIDGIG 582 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRH 664 + +A+ +F+ P N+ E +L EV+P R+E + + S + K +VFTG L+ + R Sbjct: 583 PSVVEALGDFFHEPHNVAVWEDILSEVTPP--RYEVETLDSPVAGKTVVFTGKLETMSRD 640 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +A+ +LGA + +S KTD+++ G GSKL+KA+QLG+++++E Sbjct: 641 EAKAQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKKAEQLGIEVVDE 687 >gi|296116447|ref|ZP_06835061.1| putative DNA ligase [Gluconacetobacter hansenii ATCC 23769] gi|295977040|gb|EFG83804.1| putative DNA ligase [Gluconacetobacter hansenii ATCC 23769] Length = 709 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 280/704 (39%), Positives = 414/704 (58%), Gaps = 35/704 (4%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S QA EL+ L I+ D Y+Q PI+ D+ YDAL+RR + A P R + P Sbjct: 24 MSASQAASELALLADVIAQLDRAYHQDDAPIVTDAVYDALRRRNSELEQAHPRERRDDSP 83 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--IFFT 129 + ++G + + + H P LSL+ +++ E+ FI+R RF D + + F Sbjct: 84 D---TRVGAAPSGAFRRHRHLTPMLSLDNVFSREEFEGFISRAARFLGLDDAQATQLDFV 140 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 EPKIDG I++ YE FV RGDG GEDV+A +R + +P+ L P++IE+RG Sbjct: 141 AEPKIDGLSISLTYENRHFVRGTTRGDGTEGEDVTANLRTLRNMPQQLHGPAPDLIEIRG 200 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTS 247 EV+++K+DFL LN +A G+KP+ANPRNAA+G LR+L+ +ITR L+ F + +G S Sbjct: 201 EVFLAKSDFLTLNAAQVAAGQKPFANPRNAAAGSLRQLD-AEITRQRPLSLFAYAVGYCS 259 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 A L+++ GF V+ + ++ + RS L YDIDG+VYK++ Sbjct: 260 APVADTHDLYLRQLGEWGFAVSPLCTRVANEAEAEAFMERIARERSALDYDIDGVVYKIN 319 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E +LQ++LG R+PRW ++ KFA +QA TRL IDIQ+GRTG LTPVA LEPVN+GG + Sbjct: 320 ERALQERLGFAGRAPRWAVAWKFAAEQAITRLTKIDIQVGRTGALTPVAILEPVNVGGVI 379 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +T A+LHNED +++R +D++ GD V ++RAG+VIP+V+D+++ H P Sbjct: 380 VTRASLHNED---------EIVR--KDVQEGDLVRIQRAGDVIPQVLDVVLPRDH-SPHP 427 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C + R G++V RC+GGL C AQ +ERL HFVSRDAF+IEGLG Sbjct: 428 FVFPHVCPVCHAHAER----PEGEVV--WRCSGGLTCPAQLVERLIHFVSRDAFDIEGLG 481 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + F + PADIF L ++ + G+G +S NL ++I RR Sbjct: 482 DRTIAEFHADG----LLGTPADIFHLPTHEEAIAVRP----GWGTLSARNLMNAIAARRT 533 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 ISL RFI++LGIR +G AR LA++Y SY N+ Q++ +D+ L L + +G Sbjct: 534 ISLSRFIYALGIRRIGINTARLLARHYGSYDNWHQQMLRATTVGSDERLELGSITGIGTA 593 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IA +V F+ N +E L V +I E + E+ K +VFTGTL + R +A+ Sbjct: 594 IADELVAFFIEAHNRQTLED-LTHVLEAITDEEMLAAGELSGKVIVFTGTLTTMSRPEAR 652 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 ++GA VS +SRKTDI+++G+ GSK KA +L + ++E Sbjct: 653 AIAERMGARVSDSVSRKTDIVVLGEKAGSKARKAAELNLHTVDE 696 >gi|149184723|ref|ZP_01863041.1| DNA ligase [Erythrobacter sp. SD-21] gi|148832043|gb|EDL50476.1| DNA ligase [Erythrobacter sp. SD-21] Length = 690 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 276/707 (39%), Positives = 405/707 (57%), Gaps = 33/707 (4%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A EL L + I+ H+ Y+ P I D E+DAL RR + FP L R + P+ Sbjct: 13 EAANELMRLARAIAKHNKLYHAEDAPEITDQEFDALVRRNAELEEQFPHLVREDSPS--- 69 Query: 76 NKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +G E+ S L KVTH + +SL+ ++ E++ +++ R+ RF + + T E KI Sbjct: 70 KVVGHEIAASPLSKVTHEVRMMSLDNAFSGEEVAEWVARVRRFLSLDESEEVAITAEDKI 129 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG ++RYEKG+ V AA RGDG GEDV+ I I IP+ LS ++PE+ E+RGEVY++ Sbjct: 130 DGLSCSLRYEKGRLVRAATRGDGQVGEDVTPNIAHIADIPQQLSGDVPEVFEIRGEVYMA 189 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K DF ALN G K +ANPRNAA+G LR+ + + R L F+ HG G S + Sbjct: 190 KADFSALNAAQEDAGGKLFANPRNAAAGSLRQKDASVTAKRPLRFWAHGWGAASAVPGAT 249 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q E+++++ G PV+ + + ++++Y ++ R LPY+IDG+VYKVD Q+ Sbjct: 250 QEEVVRQIENWGVPVSPLFTRVHDVEAMLAHYAKIAKERPDLPYEIDGVVYKVDRLDYQQ 309 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A++PRW ++HKF +QA T L IDIQ+GRTG LTPV RL PV +GG +TN TL Sbjct: 310 RLGFVAKAPRWALAHKFPAEQAETTLEAIDIQVGRTGKLTPVGRLAPVLVGGVTVTNVTL 369 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I L +R GDRV+V+RAG+VIP++VD + R +PF+FP Sbjct: 370 HNRDEIARL-----------GVRPGDRVVVQRAGDVIPQLVDNLT--RETSREPFAFPDH 416 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S V + G++ RCTGGL C AQ+ ERLKHFVSR A +I+GLG++ +D Sbjct: 417 CPECGSEAVAE----EGEVDV--RCTGGLICPAQRTERLKHFVSRGALDIDGLGEKTIDQ 470 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 FF + PADIF L +R+ I + G+ + SV L DSI RR R Sbjct: 471 FFA----LGWLESPADIFHLHQRRDA----ILALEGWQERSVDKLVDSIEARRAPDAARL 522 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIRHVGA AR L K++ + A + + SL + +G + +A+ Sbjct: 523 LFGLGIRHVGAVTARDLMKHFHELPALREAAEAAHAGDEEAAASLTSIDGIGGAVVEALG 582 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +F+ N + ++ EV+P E S + K +VFTG L+ + R +A+ +L Sbjct: 583 DFFHEDHNKAVWDDIISEVTPPPYIVETK-ESPVSGKTVVFTGKLETMSRDEAKAQAERL 641 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GA S +S KTD+++ G GSKL+KA LG+K+++E + ++ + Sbjct: 642 GAKASGSVSAKTDLLVAGPGAGSKLKKAADLGIKVIDEAGWAKIVAE 688 >gi|34581289|ref|ZP_00142769.1| DNA ligase [Rickettsia sibirica 246] gi|28262674|gb|EAA26178.1| DNA ligase [Rickettsia sibirica 246] Length = 689 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 276/712 (38%), Positives = 424/712 (59%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S E+A+K L L +I+ ++ YY P++ DSEYD L + FP L Sbjct: 4 IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G ++ KVTH +P LSL ++ +D+R F+ RI F + + IF Sbjct: 64 ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G A RGDG+ GED++A I+ I P + N+PE +EVR Sbjct: 120 -CEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKID-NVPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN E G+ +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ GF +N + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIPK++ + ++R D + Sbjct: 358 VSRATLHNFQEI-----------ARKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FC C S++ P+ + RC GL C AQ ER++HFVS++A +IEGLG Sbjct: 407 FDTPLFCLSCNSKL--HYTPEDIII----RCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F D I P DIF L+ + +S K+EN+ G+G SV NL+ +I K +N Sbjct: 461 RKQVEFLI---DKGL-ISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + A+ LA+ + SY NF ++ + + D + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I I++F+ NI ++ L E+ E S + +K +VFTG+L + R +A+ Sbjct: 577 ILVDIIDFFDVKENIELIKK-LGEILNIEDYKETREQSSLMDKIVVFTGSLPTMSRAEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+ +S TD+++VG + GSKL+KA++L +KI++EE++L L++ Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVVGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687 >gi|170746461|ref|YP_001752721.1| DNA ligase, NAD-dependent [Methylobacterium radiotolerans JCM 2831] gi|254781368|sp|B1M575|DNLJ_METRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|170652983|gb|ACB22038.1| DNA ligase, NAD-dependent [Methylobacterium radiotolerans JCM 2831] Length = 810 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 258/620 (41%), Positives = 369/620 (59%), Gaps = 33/620 (5%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ E+AR E + L I D YYQ P I D+EYD L+RR + I FPDLA + Sbjct: 13 LTAEEARAEYARLSDAILEADRLYYQEDAPEISDAEYDRLRRRLEDIEARFPDLAGT--- 69 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 +G + + KV H++P LSL ++ ++ +F+ R+ RF DD + FT E Sbjct: 70 GAASTSVGAKPSEKFAKVRHAVPMLSLGNAFDDAEVAEFVARVRRFLGWSDDTPLAFTAE 129 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190 PKIDG +++RY G+ AA RGDG GE+V+A R + IP VL+ PEI EVRGE Sbjct: 130 PKIDGLSLSLRYVNGRLDTAATRGDGEVGENVTANARTVQDIPAVLAGAGWPEICEVRGE 189 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+S DF A+N A G+ +ANPRNAA+G LR+L+P +R L FF + G+ S Sbjct: 190 VYLSHADFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFAYAWGELSAP 249 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A+ Q +L++ G PVN ++++Y +++ R+ L YDIDG+VYKVD+ Sbjct: 250 IAETQTGVLEQFATWGLPVNPRTETFTDTAAMLAHYRRIEADRAGLGYDIDGVVYKVDDL 309 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQK+LG +RSPRW ++HKFA ++A+T + DI I +GRTG L P+A+L PV +GG +++ Sbjct: 310 ALQKRLGFVSRSPRWALAHKFAAQEATTVVEDIVINVGRTGSLNPLAKLRPVTVGGVVVS 369 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNE Y+KG+ A G+ +R GRDIRVGD V V RAG+VIPKV+D+ + +R D++P++ Sbjct: 370 NATLHNEGYVKGVGADGEPIRDGRDIRVGDTVTVVRAGDVIPKVMDVDLTKRPADSRPYA 429 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP C SR VR +NP+TG+ A RCTGGL C AQ +ER+KHFVSR+ F+IEG G+ Sbjct: 430 FPESCPACGSRAVRAINPRTGRPDAVRRCTGGLICPAQGVERMKHFVSRNGFDIEGFGET 489 Query: 490 QLDFFFKSEDPAFSIRIPADIFTL------------------QRRQQTSTTKIENILGFG 531 ++ F+ A +R PAD+F L +RR ++ T + Sbjct: 490 YIEVLFE----AGLVRQPADLFRLDFEELKAAIVARREALSAERRAESGTAEPPKKAAKK 545 Query: 532 -----DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEIN 585 D ++ NL ++ RR + + R +F+LGI +G A++LAK + A Sbjct: 546 KGDEDDKAIKNLLAAVEARRAVPMNRLLFALGIPQIGEATAKALAKRFADMPTLIAAIRE 605 Query: 586 NIIAHNNDDWLSLIRVPLVG 605 A DW+ L VP VG Sbjct: 606 AAAAQPGPDWVELTAVPRVG 625 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G + A++ F+ P N AV ALL V+ +S K +VFTG L+K+ R Sbjct: 694 IGPVATDALLLFFSEPHNADAVTALLDAVAVQP-MERAAAASTFAGKTVVFTGALEKMTR 752 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++A+ +LGA VS +S KTD+++ G GSKL+ AQ+ GV++++E+ +L ++ Q Sbjct: 753 NEAKAVAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAQKHGVRVVSEDDWLAMVAQ 809 >gi|67458584|ref|YP_246208.1| NAD-dependent DNA ligase LigA [Rickettsia felis URRWXCal2] gi|67004117|gb|AAY61043.1| DNA ligase, NAD-dependent [Rickettsia felis URRWXCal2] Length = 706 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 275/694 (39%), Positives = 412/694 (59%), Gaps = 29/694 (4%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 +I+ ++ YY P++ DSEYD L + FP L N P KIG ++ Sbjct: 39 KIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLVLE---NSPSKKIGAKITNKF 95 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 K+TH IP LSL ++ +D+R F+ RI F + + IF EPKIDG + Y+ G Sbjct: 96 AKITHQIPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPIF--CEPKIDGLSFSAIYKNG 153 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 A RGDG+ GED++A I+ I P + N PE +EVRGE+YI K DFL LN E Sbjct: 154 LLTTGATRGDGYVGEDITANIKTIKNFPHKID-NAPEFLEVRGEIYIEKQDFLNLNKEQE 212 Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 GR +ANPRNAA+G LR+L+ + R L +FV+ G T + A Q ++L K++ G Sbjct: 213 EQGRDKFANPRNAAAGSLRQLDASITAQRSLKYFVYSGGVTEQNLASSQEQLLIKLKEFG 272 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F VN + N+ I ++Y +K+ R LPY+IDG+VYK+++F+LQ ++G ARSPR+ Sbjct: 273 FSVNEISKLTNSEEEIFTFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRFA 332 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG ++ ATLHN Sbjct: 333 TAHKFPAIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHN---------F 383 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++MR +D+R+ D V ++RAG+VIPK+ + + +R D F P FCP C S+ L Sbjct: 384 QEIMR--KDVRIDDYVFLQRAGDVIPKITGVDIGKRPNDTIAFDTPLFCPSCNSK----L 437 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 + ++ RC GL C AQ ER++HFVS++A +IEGLG++Q++F D I Sbjct: 438 HYAPEDIII--RCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLI---DKGL-IS 491 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 P DIF L+ + +S TK+EN+ G+G SV NL+ +I + +N+SL RFI++LGIRH+G + Sbjct: 492 NPLDIFFLKEKNDSSLTKLENMDGWGKKSVENLFKNIEQSKNVSLPRFIYALGIRHIGEQ 551 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A+ LA+ + SY NF ++ + ++ D + L + +GD I I++F+ N + Sbjct: 552 NAKLLAREFGSYANFIAQMELLSKNDLDIYQKLNDLEGIGDKILVDIIDFFDVKENTTLI 611 Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 + L EV E S + K +VFTG+L I R +A+ +LGA V+A +S T Sbjct: 612 KK-LGEVLNIEDYKETREQSSLTGKIIVFTGSLPTISRAEAKATAEKLGAKVAASVSSNT 670 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 D+++ G + GSKL+KA++L +KI+ EE++L L++ Sbjct: 671 DLVVAGVDAGSKLKKAKELNIKIIGEEEWLTLIK 704 >gi|134034096|sp|Q4UN15|DNLJ_RICFE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 689 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 275/694 (39%), Positives = 412/694 (59%), Gaps = 29/694 (4%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 +I+ ++ YY P++ DSEYD L + FP L N P KIG ++ Sbjct: 22 KIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLVLE---NSPSKKIGAKITNKF 78 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 K+TH IP LSL ++ +D+R F+ RI F + + IF EPKIDG + Y+ G Sbjct: 79 AKITHQIPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPIF--CEPKIDGLSFSAIYKNG 136 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 A RGDG+ GED++A I+ I P + N PE +EVRGE+YI K DFL LN E Sbjct: 137 LLTTGATRGDGYVGEDITANIKTIKNFPHKID-NAPEFLEVRGEIYIEKQDFLNLNKEQE 195 Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 GR +ANPRNAA+G LR+L+ + R L +FV+ G T + A Q ++L K++ G Sbjct: 196 EQGRDKFANPRNAAAGSLRQLDASITAQRSLKYFVYSGGVTEQNLASSQEQLLIKLKEFG 255 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F VN + N+ I ++Y +K+ R LPY+IDG+VYK+++F+LQ ++G ARSPR+ Sbjct: 256 FSVNEISKLTNSEEEIFTFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRFA 315 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG ++ ATLHN Sbjct: 316 TAHKFPAIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHN---------F 366 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++MR +D+R+ D V ++RAG+VIPK+ + + +R D F P FCP C S+ L Sbjct: 367 QEIMR--KDVRIDDYVFLQRAGDVIPKITGVDIGKRPNDTIAFDTPLFCPSCNSK----L 420 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 + ++ RC GL C AQ ER++HFVS++A +IEGLG++Q++F D I Sbjct: 421 HYAPEDIII--RCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLI---DKGL-IS 474 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 P DIF L+ + +S TK+EN+ G+G SV NL+ +I + +N+SL RFI++LGIRH+G + Sbjct: 475 NPLDIFFLKEKNDSSLTKLENMDGWGKKSVENLFKNIEQSKNVSLPRFIYALGIRHIGEQ 534 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A+ LA+ + SY NF ++ + ++ D + L + +GD I I++F+ N + Sbjct: 535 NAKLLAREFGSYANFIAQMELLSKNDLDIYQKLNDLEGIGDKILVDIIDFFDVKENTTLI 594 Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 + L EV E S + K +VFTG+L I R +A+ +LGA V+A +S T Sbjct: 595 KK-LGEVLNIEDYKETREQSSLTGKIIVFTGSLPTISRAEAKATAEKLGAKVAASVSSNT 653 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 D+++ G + GSKL+KA++L +KI+ EE++L L++ Sbjct: 654 DLVVAGVDAGSKLKKAKELNIKIIGEEEWLTLIK 687 >gi|157828943|ref|YP_001495185.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933668|ref|YP_001650457.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. Iowa] gi|166216235|sp|A8GTF2|DNLJ_RICRS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359278|sp|B0BUZ1|DNLJ_RICRO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157801424|gb|ABV76677.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908755|gb|ABY73051.1| NAD-dependent DNA ligase [Rickettsia rickettsii str. Iowa] Length = 689 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 275/712 (38%), Positives = 423/712 (59%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S E+A+K L L +I+ ++ YY P++ DSEYD L + FP L Sbjct: 4 IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G ++ KVTH +P LSL ++ +D+R F+ RI F + + IF Sbjct: 64 ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G A RGDG+ GED++A I+ I P + N+PE +EVR Sbjct: 120 -CEPKIDGVSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKID-NVPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN E G+ +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ GF +N + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G AR+PR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFALQNRMGFIARNPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIPK++ + ++R D + Sbjct: 358 VSRATLHNFQEI-----------ARKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FC C S++ P+ + RC GL C AQ ER++HFVS++A +IEGLG Sbjct: 407 FDTPLFCLSCNSKL--HYTPEDIII----RCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F D I P DIF L+ + +S K+EN+ G+G SV NL+ +I K +N Sbjct: 461 RKQVEFLI---DKGL-ISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + A+ LA+ + SY NF ++ + + D + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I I++F+ NI ++ L E+ E S + +K +VFTG+L I R +A+ Sbjct: 577 ILVDIIDFFDVKENIELIKK-LGEILNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+ +S TD+++ G + GSKL+KA++L +KI++EE++L L++ Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687 >gi|94497003|ref|ZP_01303577.1| DNA ligase, NAD-dependent [Sphingomonas sp. SKA58] gi|94423679|gb|EAT08706.1| DNA ligase, NAD-dependent [Sphingomonas sp. SKA58] Length = 703 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 285/720 (39%), Positives = 423/720 (58%), Gaps = 48/720 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ +A L L +E++ H+ Y+ P I D++YDAL R +A+ AFP L R++ P Sbjct: 7 LTEAEAANRLMRLAKEVAKHNRLYHDQDAPEISDADYDALIRENNALEAAFPHLIRADSP 66 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N ++G +L KV H++ +SL+ ++ ED+ F+ RI RF DD + T E Sbjct: 67 NA---QVGAASTTALKKVPHAVRMMSLDNGFSDEDIADFLARIRRFLALPDDAPVALTAE 123 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PKIDG ++RYEKG+ V AA RGDG +GEDV+A + I IP R+ IP++ E+RGE Sbjct: 124 PKIDGLSCSLRYEKGELVLAATRGDGTTGEDVTANVHTIADIPQRLTGEAIPDLFEIRGE 183 Query: 191 VYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 VY++K DF+ALN ++A P +ANPRNAA+G LR+ + T +R L F HG G Sbjct: 184 VYMAKGDFVALNARLLAEAENPEKARQFANPRNAAAGSLRQKDATVTASRPLRFLAHGWG 243 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 S + A Q ++Q + G PV++ + ++ ++++Y +++ R+ LP+DIDG+VY Sbjct: 244 AHSALPADTQLGVMQAIAGWGLPVSDMLACVDSLDALIAHYRTIEAGRADLPFDIDGVVY 303 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD Q++LG A++PRW I+HKF ++A T L IDIQ+GRTG LTPV RL PV +G Sbjct: 304 KVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLTPVTVG 363 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++N TLHN D I L +R GDR++V+RAG+VIP+VVD + R Sbjct: 364 GVVVSNVTLHNADEIARL-----------GVRPGDRIIVQRAGDVIPQVVDNLT--RDEA 410 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +PF FP+ CP+C S VR+ G++ RCTGGL C AQ+ ERL+HFVSR A +IE Sbjct: 411 REPFPFPTHCPVCGSEAVRE----EGEVDV--RCTGGLICPAQRFERLRHFVSRAALDIE 464 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ + F D + I PADIF L++ + + G+ + SV NL +I Sbjct: 465 GLGEKTIQEFL---DLGW-IAEPADIFRLKKHR----ADLLGREGWKEKSVDNLLMAIEA 516 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSY---QNFAQEINNIIAHNNDDWLSL--- 598 +R R +F LGIRHVGA AR L K Y + + AQ+I + +D + Sbjct: 517 KRQPDAARLLFGLGIRHVGAVTARDLLKRYATLPAIRALAQDIMALRDQPHDSQAKMDKA 576 Query: 599 ----IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654 I V VG + A+ F+ P N+ A + LL EVSP E VS+ + K +VF Sbjct: 577 IAEHIGVDNVGVAVGHALAHFFHEPHNVEAWDDLLSEVSPPPYVVETTVSA-VTGKTVVF 635 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG L+ + R +A+ ++GA + +S KTD+++ G GSKL++A LG++++ E+ + Sbjct: 636 TGKLETMSRDEAKAQAERMGAKAAGSVSAKTDLVVAGPGAGSKLKQATVLGIEVITEQAW 695 >gi|51473890|ref|YP_067647.1| NAD-dependent DNA ligase LigA [Rickettsia typhi str. Wilmington] gi|81389976|sp|Q68W27|DNLJ_RICTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|51460202|gb|AAU04165.1| DNA joinase [Rickettsia typhi str. Wilmington] Length = 693 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 274/717 (38%), Positives = 427/717 (59%), Gaps = 39/717 (5%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S ++A+K L L +I+ ++ YY P++ DSEYD L + + FP L S Sbjct: 4 IDLISEKEAKKLLEELADKIAMYNHAYYIEDNPLVSDSEYDQLFNLNLKLENTFPHLVLS 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P KIG ++ KV H P LSL ++ ED+R F+ RI F + + IF Sbjct: 64 ---NSPSKKIGAKITNKFAKVIHQAPMLSLSNAFDEEDIRDFLERIKNFLRINEFTPIF- 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G F+ A RGDG+ GED++ I+ I P + N PE +EVR Sbjct: 120 -CEPKIDGLSFSAIYKHGLFITGATRGDGYVGEDITINIKTIKNFPHKID-NAPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GE+YI K DF+ LN E A R +ANPRNAA+G +R+L+ R L +F++ G T Sbjct: 178 GEIYIEKQDFVNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ L F VN + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 KNLASTQEQLLAKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 F++Q ++G ARSPR+ I+HKF T+LL I +Q+GRTG+LTPVA L+P+ IGG + Sbjct: 298 NFAMQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPLEIGGVV 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIP++ + +++R D Sbjct: 358 VSRATLHNFQDI-----------ARKDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVK 406 Query: 428 FSFPSFCPICQSR---VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 F P FCP C S+ V D+ RC GL C AQ ER+ HFVS++A +I Sbjct: 407 FDTPVFCPSCNSKLRYVSEDI---------IIRCDNGLNCPAQNYERICHFVSKNAMDIA 457 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q+ F I P DIF L+++ +T+ ++EN+ G+G SV NL+ +I K Sbjct: 458 GLGRKQVAFLIDKR----LISNPLDIFFLKKKNETNLIRLENMDGWGKKSVANLWQNIEK 513 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + ISL+RFI++LGIRH+G + A+ LA+ ++SY NF ++ + +++D + L + + Sbjct: 514 SQKISLQRFIYALGIRHIGEQNAKLLAREFVSYNNFIAQMELLSKNDSDVYQKLNDLEGI 573 Query: 605 GDIIAQAIVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 GD + I++F+ NI ++ L + + E+N+ + K LVFTG+L+ I Sbjct: 574 GDKMLVDIIDFFYVKENIQLIKKLGAVLNIEDYKETREQNI---LTGKILVFTGSLKTIS 630 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+E +LGA V++ +S TD++IVG N GSKL+KA++L +KI++E ++L ++ Sbjct: 631 RVEAKEIAEKLGAKVASSVSSNTDLLIVGVNGGSKLKKAKELNIKIIDEAEWLAFIK 687 >gi|307293327|ref|ZP_07573173.1| DNA ligase, NAD-dependent [Sphingobium chlorophenolicum L-1] gi|306881393|gb|EFN12609.1| DNA ligase, NAD-dependent [Sphingobium chlorophenolicum L-1] Length = 711 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 287/724 (39%), Positives = 421/724 (58%), Gaps = 56/724 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A L L +EI+ H+ Y+ +P I D+ YDAL R +A+ AFP L RS+ PN Sbjct: 11 EAANRLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHLIRSDSPNA-- 68 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G +L KV H++ +SL+ + ED+ +FI R+ RF +D + T EPKID Sbjct: 69 -QVGAAPTSALKKVQHAVRMMSLDNGFADEDIAEFIARVRRFLALPEDAPVALTAEPKID 127 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G ++RYEKG+ V AA RGDG +GEDV+A +R I IP R+ +P++ EVRGEVY++ Sbjct: 128 GLSCSLRYEKGELVLAATRGDGTTGEDVTANVRTIADIPQRLTGQAVPDLFEVRGEVYMA 187 Query: 195 KNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 K DF+ALN+ ++A P +ANPRNAA+G LR+ + +R L F HG G+ S Sbjct: 188 KADFVALNERLLAEAEDPEKARQFANPRNAAAGSLRQKDAAVTASRPLRFLAHGWGEVSA 247 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + A+ Q ++Q + G PV++ + +T ++++Y +++ R+ LP+DIDG+VYKVD Sbjct: 248 VPAQTQLGVMQAIAGWGLPVSDRLACVDTLEALIAHYRAIEAARAELPFDIDGVVYKVDR 307 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q++LG A++PRW I+HKF ++A T L IDIQ+GRTG LTPV RL PV +GG ++ Sbjct: 308 LDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLTPVTVGGVVV 367 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +N TLHN D I L +R GDR++V+RAG+VIP+VVD + R PF Sbjct: 368 SNVTLHNADEIARL-----------GVRPGDRIVVQRAGDVIPQVVDNLT--RDDPRSPF 414 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP+CQS VR+ G++ RCTGGL C+AQ+ ERL+HFVSR A +IEGLG+ Sbjct: 415 IFPDHCPVCQSEAVRE----EGEVDI--RCTGGLICAAQRFERLRHFVSRAALDIEGLGE 468 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ F D + I PADIF R +T T + G+ + SV NL +I +R Sbjct: 469 KSIEEFL---DLGW-IAEPADIF----RLRTHRTDLLGREGWKEKSVDNLLAAIEAKRQP 520 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN---------------- 592 R +F LGIRH+GA AR L K Y + IIA + Sbjct: 521 DAARLLFGLGIRHIGAVTARDLLKRYTTLPAIHGLAKEIIALRDAAAPAEGEEESRFRNR 580 Query: 593 -DDWLS-LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 D ++ I V VG + A+ +F+ P N+ LL EVSP E S+ + K Sbjct: 581 LDKAIAEQIGVENVGSAVGHALADFFHEPHNVEVWNDLLSEVSPPDYVVETTASA-VTGK 639 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +VFTG L+ + R +A+ +LGA + +S KTD+++ G GSKL++A LG+++++ Sbjct: 640 TVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKQAAALGIEVID 699 Query: 711 EEQF 714 E + Sbjct: 700 EAAW 703 >gi|157964864|ref|YP_001499688.1| NAD-dependent DNA ligase LigA [Rickettsia massiliae MTU5] gi|166216234|sp|A8F2K5|DNLJ_RICM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157844640|gb|ABV85141.1| DNA ligase, NAD-dependent [Rickettsia massiliae MTU5] Length = 689 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 276/712 (38%), Positives = 422/712 (59%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S ++A+K L L +I+ ++ YY P++ DSEYD L + FP L Sbjct: 4 IDLISEKEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G ++ KVTH +P LSL ++ +D+R F+ RI F + + IF Sbjct: 64 ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLNEFAPIF- 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G A RGDG+ GED++A I+ I P + N+PE +EVR Sbjct: 120 -CEPKIDGLSFSAVYKNGVLTTGATRGDGYVGEDITANIKTIKNFPHKID-NVPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN E G+ +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ GF +N + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNREDLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTQLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIPK++ + ++R D Sbjct: 358 VSRATLHNFQEI-----------ARKDVRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTAT 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FC C S+ L+ ++ RC GL C AQ ER++HFVS++A +IEGLG Sbjct: 407 FDTPLFCLSCNSK----LHYMPEDIII--RCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F D I P DIF L+ + +S K+EN+ G+G SV NL+ +I K +N Sbjct: 461 RKQVEFLI---DKGL-ISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + A+ LA+ SY NF ++ + + D + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREVGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I I++F+ NI ++ L E+ E S + +K +VFTG+L I R +A+ Sbjct: 577 ILVDIIDFFDVKENIELIKK-LGEILNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+A +S TD+++ G + GSKL+KA++L +KI++EE++L L++ Sbjct: 636 ATAEKLGAKVTAGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687 >gi|229587074|ref|YP_002845575.1| NAD-dependent DNA ligase LigA [Rickettsia africae ESF-5] gi|254781406|sp|C3PLJ2|DNLJ_RICAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|228022124|gb|ACP53832.1| DNA ligase, NAD-dependent [Rickettsia africae ESF-5] Length = 689 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 275/712 (38%), Positives = 423/712 (59%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S E+A+K L L +I+ ++ YY P++ DSEYD L + FP L Sbjct: 4 IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G ++ KVTH +P LSL ++ +D+R F+ RI F + + IF Sbjct: 64 ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G A RGDG+ GED++A I+ I P + N+PE +EVR Sbjct: 120 -CEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKID-NVPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN E G+ +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFLNLNKEQDEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ GF +N + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFVLQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIPK++ + ++R D + Sbjct: 358 VSRATLHNFQEI-----------ARKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FC C S++ P+ + RC GL C AQ ER++HFVS++A +IEGLG Sbjct: 407 FDTPLFCLSCNSKL--HYTPEDIII----RCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F D I P DIF L+ + +S K+EN+ G+G SV NL+ +I K +N Sbjct: 461 RKQVEFLI---DKGL-ISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + A+ LA+ + SY NF ++ + + D + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I I++F+ NI ++ L ++ + + SS + +K +VFTG+L I R +A+ Sbjct: 577 ILVDIIDFFDVKENIELIKKLGGILNIEDYKETREQSS-LTDKIVVFTGSLSTISRAEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+ +S TD+++ G GSKL+KA++L +KI++EE++L L++ Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVGAGSKLKKAKELNIKIIDEEEWLTLIK 687 >gi|238650378|ref|YP_002916230.1| NAD-dependent DNA ligase LigA [Rickettsia peacockii str. Rustic] gi|257096313|sp|C4K0T1|DNLJ_RICPU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|238624476|gb|ACR47182.1| NAD-dependent DNA ligase LigA [Rickettsia peacockii str. Rustic] Length = 689 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 275/712 (38%), Positives = 421/712 (59%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S E+A+K L L +I+ ++ YY P++ DSEYD L + FP L Sbjct: 4 IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G ++ KV H +P LSL ++ +D+R F+ RI F + + IF Sbjct: 64 ---NSPSKKVGAKIANKFAKVMHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G A RGDG+ GED++A I+ I P + N+PE +EVR Sbjct: 120 -CEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKID-NVPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN E G+ +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ GF +N + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIPK++ + ++R D + Sbjct: 358 VSRATLHNFQEI-----------ARKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FC C S++ P+ + RC GL C AQ ER+ HFVS++A +IEGLG Sbjct: 407 FDTPLFCLSCNSKL--HYTPEDIII----RCDNGLNCPAQNYERIHHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F D I P DIF L+ + +S K+EN+ G+G SV NL+ +I K +N Sbjct: 461 RKQVEFLI---DKGL-ISNPLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + A+ LA+ + SY NF ++ + + D + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLARAFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I I++F+ NI ++ L E+ E S + +K +VFTG+L I R +A+ Sbjct: 577 ILVDIIDFFDVKENIELIKK-LGEILNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+ +S TD+++ G + GSKL+KA++L +KI++EE++L L++ Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687 >gi|15604557|ref|NP_221075.1| NAD-dependent DNA ligase LigA [Rickettsia prowazekii str. Madrid E] gi|6225281|sp|Q9ZCK9|DNLJ_RICPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|3861252|emb|CAA15151.1| DNA LIGASE (lig) [Rickettsia prowazekii] gi|292572364|gb|ADE30279.1| DNA ligase, NAD-dependent [Rickettsia prowazekii Rp22] Length = 689 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 275/717 (38%), Positives = 422/717 (58%), Gaps = 39/717 (5%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S ++A+K L L +I+ ++ YY P++ DSEYD L + + FP L S Sbjct: 4 IDLISEQEAKKLLKELADKIAMYNHAYYIEDNPLVSDSEYDQLFNINLKLENTFPHLVLS 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G + KV H P LSL ++ +DLR F+ RI F + + IF Sbjct: 64 ---NSPSKKVGANITNKFAKVIHQAPMLSLSNAFDEDDLRDFLERIKNFLRINEFTPIF- 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G F+ A RGDG+ GED++ I+ I P + N PE +EVR Sbjct: 120 -CEPKIDGVSFSAIYKNGLFITGATRGDGYVGEDITMNIKTIKNFPHKID-NAPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GE+YI K DFL LN E A R +ANPRNAA+G +R+L+ R L +F++ G T Sbjct: 178 GEIYIEKQDFLNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ L F VN + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASTQEQLLTKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 F++Q ++G ARSPR+ I+HKF T+LL I +Q+GRTG+LTPVA L+P+ IGG + Sbjct: 298 NFAMQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPIEIGGVV 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIP++ + +++R D Sbjct: 358 VSRATLHNFQDI-----------ARKDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVK 406 Query: 428 FSFPSFCPICQSR---VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 F P FCP C S+ V D+ RC GL C AQ ER+ HFVS++A +IE Sbjct: 407 FDTPVFCPSCNSKLRYVSEDI---------IIRCDNGLNCPAQNYERICHFVSKNAMDIE 457 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q+ F I P DIF L+ + +T+ ++EN+ G+G SV NL+ +I K Sbjct: 458 GLGRKQVAFLIDKR----LISNPLDIFFLKEKNETNLIRLENMDGWGKKSVANLFKNIEK 513 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + ISL+RFI++LGIRH+G + A+ LA+ + SY NF ++ + +++D + L + + Sbjct: 514 SQKISLQRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLSKNDSDIYQKLNDLEGI 573 Query: 605 GDIIAQAIVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 GD I IV+F+ N ++ L + + E+N+ + K +VFTG+L I Sbjct: 574 GDKILVDIVDFFYVKENTQLIKRLGSVLNIEDYQETREQNI---LTGKIVVFTGSLSTIS 630 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+E +LGA V+A +S TD++I G N GSKL+KA++L +KI++E ++L ++ Sbjct: 631 RVEAKEIAEKLGAKVTASVSLNTDLVIAGVNGGSKLKKAKELNIKIIDEVEWLAFIK 687 >gi|15893019|ref|NP_360733.1| NAD-dependent DNA ligase LigA [Rickettsia conorii str. Malish 7] gi|81527939|sp|Q92GM7|DNLJ_RICCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|15620219|gb|AAL03634.1| DNA ligase [Rickettsia conorii str. Malish 7] Length = 689 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 275/712 (38%), Positives = 422/712 (59%), Gaps = 29/712 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S E+A+K L L +I+ ++ YY P++ DSEYD L + FP L Sbjct: 4 IDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G ++ KVTH +P LSL ++ +D+R F+ RI F + + IF Sbjct: 64 ---NSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIF- 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G A RGDG+ GED++A I+ I P + N+PE +EVR Sbjct: 120 -CEPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKID-NVPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN E G+ +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ GF +N + A++ I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFALQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN I +D+R+ D V ++RAG+VIPK++ + ++R D + Sbjct: 358 VSRATLHNFQEI-----------ARKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTET 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P FC C S++ P+ + RC GL C AQ ER++HFVS++A +IEGLG Sbjct: 407 FDTPLFCLSCNSKL--HYTPEDIII----RCDNGLNCPAQNYERIRHFVSKNAMDIEGLG 460 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++F D I DIF L+ + +S K+EN+ G+G SV NL+ +I K +N Sbjct: 461 RKQVEFLI---DKGL-ISNLLDIFFLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKN 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +SL RFI++LGIRH+G + A+ LA+ + SY NF ++ + + D + L + +GD Sbjct: 517 VSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLRTNEPDIYQKLKNLEGIGDK 576 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I I++F+ NI ++ L E+ E S + +K +VFTG+L I R +A+ Sbjct: 577 ILVDIIDFFDVKENIELIKK-LGEILNIEDYKETREQSGLTDKIVVFTGSLPTISRAEAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +LGA V+ +S TD+++ G + GSKL+KA++L +KI++EE++L L++ Sbjct: 636 ATAEKLGAKVAVGVSSNTDLVVAGVDAGSKLKKAKELNIKIIDEEEWLTLIK 687 >gi|294011619|ref|YP_003545079.1| NAD-dependent DNA ligase [Sphingobium japonicum UT26S] gi|292674949|dbj|BAI96467.1| NAD-dependent DNA ligase [Sphingobium japonicum UT26S] Length = 711 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 284/736 (38%), Positives = 429/736 (58%), Gaps = 56/736 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +++ +A L L +EI+ H+ Y+ +P I D+ YDAL R +A+ AFP L RS Sbjct: 4 LTSMTEAEAANHLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHLVRS 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + PN ++G +L KV H++ +SL+ + ED+ +FI R+ RF ++ + Sbjct: 64 DSPNA---QVGAAPTSALKKVQHAVRMMSLDNGFADEDIAEFIARVRRFLALPENAPVAL 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187 T EPKIDG ++RYEKG+ V AA RGDG +GEDV+A +R I IP R+ +P++ EV Sbjct: 121 TAEPKIDGLSCSLRYEKGELVLAATRGDGTTGEDVTANVRTIADIPERLTGDTVPDLFEV 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNFFVH 241 RGEVY++K +F+ALN+ ++A P +ANPRNAA+G LR+ + +R L F H Sbjct: 181 RGEVYMAKANFVALNERLLAEAEDPEKARQFANPRNAAAGSLRQKDAAVTASRPLRFLAH 240 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G G+ S + A+ Q ++Q + G PV++ + +T ++++Y +++ R+ LP+DIDG Sbjct: 241 GWGEVSAVPAETQLGVMQAIASWGLPVSDRLTCVDTLESLIAHYRAIEAARAELPFDIDG 300 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD Q++LG A++PRW I+HKF ++A T L IDIQ+GRTG LTPV RL PV Sbjct: 301 VVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLTPV 360 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG +++N TLHN D I L +R GDR++V+RAG+VIP+VVD + + Sbjct: 361 TVGGVVVSNVTLHNADEIARLG-----------VRPGDRIVVQRAGDVIPQVVDNLTRD- 408 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P A PF+FP CP+CQS VR+ G++ RCTGGL C AQ+ ERL+HFVSR A Sbjct: 409 DPRA-PFAFPDHCPVCQSEAVRE----EGEVDI--RCTGGLICPAQRFERLRHFVSRAAL 461 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG++ ++ F D + I PADIF R +T + G+ + SV NL + Sbjct: 462 DIEGLGEKSIEEFL---DLGW-IAEPADIF----RLKTHRADLMGREGWKEKSVDNLLAA 513 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN--------- 592 I +R R +F LGIRH+GA AR L K Y + IIA + Sbjct: 514 IEAKRQPDAARLLFGLGIRHIGAVTARDLLKRYATLPAIHALALEIIALRDAAQPAEGEE 573 Query: 593 --------DDWLS-LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 D ++ I V VG + A+ +F+ P N+ LL EVSP E Sbjct: 574 ESRFRNRLDKAIAEQIGVENVGSAVGHALADFFHEPHNVEVWNDLLSEVSPPDYVVETTA 633 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 S+ + K +VFTG L+ + R +A+ ++GA + +S KTD+++ G GSKL++A Sbjct: 634 SA-VTGKTVVFTGKLETMSRDEAKAQAERMGAKAAGSVSAKTDLVVAGPGAGSKLKQAAA 692 Query: 704 LGVKIMNEEQFLFLLQ 719 LG+++++E + +++ Sbjct: 693 LGIEVIDEAAWAEIVK 708 >gi|88658391|ref|YP_507122.1| DNA ligase, NAD-dependent [Ehrlichia chaffeensis str. Arkansas] gi|123763773|sp|Q2GHG1|DNLJ_EHRCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|88599848|gb|ABD45317.1| DNA ligase, NAD-dependent [Ehrlichia chaffeensis str. Arkansas] Length = 676 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 276/703 (39%), Positives = 422/703 (60%), Gaps = 41/703 (5%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+A+ EL L ++I +HD YY P I D+EYD L R+ + I +AFP L +S D Sbjct: 5 EKAKLELDKLNKQIQHHDVLYYVQDNPEISDAEYDELCRKRNLILNAFPKLTQSNDYQ-- 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 N IG + KV H SL+ +N +D+ KFITR +F D+ SI + E KI Sbjct: 63 -NNIGSSPDTKFAKVKHEEKMFSLDNAFNQQDVEKFITRTKKFLNINDNQSIPLSCELKI 121 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG ++ Y+KG+ A+ RG+G+ GE+++ ++ I +P ++ N P+++EVRGE+YI Sbjct: 122 DGLSFSVIYKKGEIYQASTRGNGYFGENITTNVKTIKNLPHIIH-NAPDLLEVRGEIYID 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252 + DF+ LN++ +ANPRNAA+G +R+L+ +IT R L +F++ + T+ + Sbjct: 181 RCDFIQLNND-----GNNFANPRNAAAGSVRQLDH-NITAQRKLKYFMYTIVNTACL--- 231 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E+L +++ GF VN + ++YN++ + RS + YDIDG++YKV++ Q Sbjct: 232 TQEELLYQLKIWGFCVNEHTITTDNIEEAFNFYNQVYNNRSNINYDIDGIIYKVNDIKSQ 291 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG ++SPRW I++KF +A T+L I IQIGRTG+LTP+A L P+NIGG ++T A+ Sbjct: 292 HILGTTSKSPRWAIAYKFPAAEAKTQLNKISIQIGRTGVLTPIAELSPINIGGVIVTRAS 351 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN++ I+ +DIR GD V+VKRAG+VIP++VD+ N R + F FP+ Sbjct: 352 LHNKNEIE-----------RKDIREGDYVIVKRAGDVIPQIVDVDKNLRTQELTKFVFPT 400 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S V + K A+ CTG L C Q LE++KHFVS+DAFNI G GK+QL Sbjct: 401 TCPSCGSSVYQ------AKQEASIYCTGELFCKDQILEKIKHFVSKDAFNIIGFGKKQLL 454 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF++ I DIFTL+ + S K+E++ G+G+ S++NL+ +IN + ISLE Sbjct: 455 FFYEQR----LITNITDIFTLEEKISNSDVKLESLHGWGEKSMSNLFSAINNSKVISLEN 510 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR +G IA+ LA ++ SY+ + E+ +A N D L+ + +G ++ Sbjct: 511 FIFALGIRFIGKYIAKILANHFSSYETWYNEMLK-LAQNEDYSLN---IQQIGSKTIGSL 566 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ P N+ + L+K ++ + + S I K +VFTG L + R +A+ Sbjct: 567 KMFFSQPHNLNMINDLVKHLTIT-DTQSSSYLSLIHGKIIVFTGELSSMSRSEAKIRSET 625 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA VS+ LS+ TD +I G+NPGSK +KAQ L V+I+ E+ +L Sbjct: 626 AGAKVSSSLSKNTDFLIAGNNPGSKYKKAQSLNVQILTEDLWL 668 >gi|157804104|ref|YP_001492653.1| NAD-dependent DNA ligase LigA [Rickettsia canadensis str. McKiel] gi|166216233|sp|A8EZT5|DNLJ_RICCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157785367|gb|ABV73868.1| DNA ligase [Rickettsia canadensis str. McKiel] Length = 689 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 274/714 (38%), Positives = 423/714 (59%), Gaps = 35/714 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I +S ++A+K L L +I ++ YY + ++ D+EYD L + FP L Sbjct: 4 IYLISEKEAKKLLKELADKIERYNHAYYIENNHLVSDAEYDQLFNTNLKLEQKFPHLILE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P K+G ++ KVTH P LSL +++ +D++ F+ RI F + + IF Sbjct: 64 ---NSPSKKVGAKIANKFAKVTHQAPMLSLSNVFDEQDVKDFVDRIKNFLRLNEFAPIF- 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G A RGDG+ GED++A I+ I P ++ N PE +EVR Sbjct: 120 -CEPKIDGLSFSAIYKNGLLTIGATRGDGYIGEDMTANIKTIKNFPHKIN-NAPEFLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DF LN E GR +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFFNLNKEQEEQGRDKFANPRNAAAGSLRQLDSSVTAKRPLKYFVYSGGATE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q E+L+K++ GF VN + A++ I ++Y +K+ R L Y+IDG+VYK++ Sbjct: 238 QNIASSQNELLKKLKEFGFRVNEISKLADSEEEIFAFYEYLKTNRENLSYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+LQ ++G AR+PR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFALQNRMGFIARAPRFATAHKFPAIVGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN +++R +D+R+ D V ++RAG+VIP+++ + + +R DA Sbjct: 358 VSRATLHN---------FQEIIR--KDVRIRDYVFLQRAGDVIPQIIGVDIGKRSTDATT 406 Query: 428 FSFPSFCPICQSR---VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 F+ P FCP C S+ + D+ RC L C AQ ER++HFVS++A +IE Sbjct: 407 FNTPLFCPSCNSKLHYIPEDI---------IIRCDNVLNCPAQNYERIRHFVSKNAMDIE 457 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++F D I P DIF L+ + + S TK+EN+ G+G SV NL+ +I + Sbjct: 458 GLGRKQVEFLI---DKGL-ISNPLDIFLLKEKNEASLTKLENMDGWGRKSVENLFKNIEE 513 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RN+SL RFI++LGIRH+G + A+ LA+ + SY NF +I + ++++ + L + + Sbjct: 514 SRNVSLPRFIYALGIRHIGEQNAKLLAREFESYNNFISQIELLSKNDSNIYQKLNNLEGI 573 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 GD I I+ F+ NI ++ L EV E S + K +VFTG+L R Sbjct: 574 GDKILVDIINFFDVKENIELIKK-LGEVLNIEDYKETKEHSSLTGKIVVFTGSLPTTSRV 632 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ +LGA V+ +S TD++I G + GSKL+KA++LG+KI++EE++L ++ Sbjct: 633 EAKAMAEKLGAKVAVSVSSNTDLVIAGVDAGSKLKKAKELGIKIIDEEEWLTIV 686 >gi|288958932|ref|YP_003449273.1| DNA ligase (NAD+) [Azospirillum sp. B510] gi|288911240|dbj|BAI72729.1| DNA ligase (NAD+) [Azospirillum sp. B510] Length = 788 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 263/623 (42%), Positives = 393/623 (63%), Gaps = 32/623 (5%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I ++AL+ EQA +L++L EI++HD Y+Q +P I D++YDAL RR AI FP+L Sbjct: 14 IAVDALTPEQAAADLAALAAEIAHHDRLYHQQDQPEITDADYDALVRRNLAIEARFPELR 73 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R++ P+ ++G KV H+IP LSL + ED+ +F R+ RF DD + Sbjct: 74 RADSPS---LRVGAAPAAGFGKVRHAIPMLSLGNAFAPEDVAEFDARVRRFLGLADDAPL 130 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 F EPKIDG ++RY+KG+ V AA RGDG GE+V+A +R I +P L PE++E Sbjct: 131 TFVAEPKIDGLSCSLRYQKGELVLAATRGDGAEGENVTANVRTIRDVPHRLPAPFPEVLE 190 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S++DFLA+N G + +ANPRNAA+G LR+L+ +R L FF + LG+ Sbjct: 191 VRGEVYMSRDDFLAMNAARAEKGEQLFANPRNAAAGSLRQLDSAITASRPLCFFGYALGE 250 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE A+ Q+ + ++++ GF +N + +++YY + +R+ LP+DIDG+VYK Sbjct: 251 ASEPIAETQWGIRERLKGWGFQLNRPAELCDGKDKLLAYYEGIGRLRAGLPFDIDGVVYK 310 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD LQ++LG +R+PRW I+HKF +QA TRL I IQ+GRTG LTPVA L+ + +GG Sbjct: 311 VDSLELQQRLGFVSRAPRWAIAHKFPAEQAQTRLKAITIQVGRTGALTPVAELDDITVGG 370 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++ ATLHNED I +DIRVGD V+V+RAG+VIP+VV++++++R D+ Sbjct: 371 VVVSRATLHNEDEI-----------ARKDIRVGDLVVVQRAGDVIPQVVEVVLSQRPADS 419 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ CP+C S +R+ G++V RCTGGL C+AQ ERL+HFVSRDAF+IEG Sbjct: 420 VPYVPVETCPVCGSLAIRE----AGEVV--RRCTGGLICAAQAKERLRHFVSRDAFDIEG 473 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ ++ F+ D F I+ P DIFTL+ R ++ G+ + SV NL+ +IN+R Sbjct: 474 LGEKIIEEFW---DEGF-IKSPVDIFTLEDR-----VELIGRPGWKEKSVENLFKAINQR 524 Query: 546 RN-ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI-IAHNNDDWLSLIRVPL 603 R+ I L R IF+LGIRHVG A+SLA++Y + + + + A +W L + Sbjct: 525 RDGIELHRVIFALGIRHVGEVTAKSLARHYRTMRGWVDGMRAAERAMPGQEWRDLHALNG 584 Query: 604 VGDIIAQAIVEFYQNPRNICAVE 626 VG + A I+ ++ +P + ++ Sbjct: 585 VGPVTADTILAWFADPESAAKLD 607 Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 1/187 (0%) Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 F D D + LE I SLGI+ + A++LA Y + ++ + +A Sbjct: 597 FADPESAAKLDFYAGSEALRLETIIGSLGIKRLNTRAAQALATRYGNLSDWRAAMERAVA 656 Query: 590 HN-NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 WL L+ P VG++ A+ + F+ RN VEAL + K +S I Sbjct: 657 QAPGQPWLDLVATPDVGEVAAEELAGFFAEERNRLIVEALAGRLIVLEAAVPKAGNSPIA 716 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +VFTGTL+++ R +A+ LGA V+ +S KTD ++ G + GSK KA+ LGV+I Sbjct: 717 GKTVVFTGTLERMTRSEAKARAESLGAKVAGSVSGKTDYLVAGADAGSKAAKAKDLGVEI 776 Query: 709 MNEEQFL 715 + EE++L Sbjct: 777 LTEEEWL 783 >gi|73667316|ref|YP_303332.1| NAD-dependent DNA ligase [Ehrlichia canis str. Jake] gi|123732189|sp|Q3YRC1|DNLJ_EHRCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|72394457|gb|AAZ68734.1| NAD-dependent DNA ligase [Ehrlichia canis str. Jake] Length = 677 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 269/703 (38%), Positives = 415/703 (59%), Gaps = 41/703 (5%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+A+ EL L +I +HD YY P I D+EYD L + + I +FP+LA + N Sbjct: 4 EEAKLELDKLNSQIQHHDFLYYTQDNPQITDAEYDVLCHKRNLILESFPELASN---NNY 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 + +G + KV H+ LSL+ +N +D+ KFITR + + SI + E KI Sbjct: 61 QDNVGSTPDAKFAKVKHAEKMLSLDNAFNQQDIEKFITRTKKLLDMDNSQSIAISCELKI 120 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG ++ Y+KG+ A+ RG+G+ GE+++ ++ I +P + N P+ +EVRGE+YI Sbjct: 121 DGLSFSVIYKKGEISQASTRGNGYFGENITNNVKTIKNLPHTIQ-NAPDSLEVRGEIYID 179 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252 ++DF+ LN + +ANPRNAA+G +R+L+ +IT R L +F++ + T + Sbjct: 180 RSDFIQLNKD-----GNNFANPRNAAAGSVRQLD-INITAQRKLKYFMYTIVNTKCL--- 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L +++ LGF VN N +++YN+ + RS + YDIDG++YKV++ Q Sbjct: 231 TQEETLNQLKTLGFCVNEHTITTNNIEDALNFYNQFYNNRSNISYDIDGIIYKVNDIKSQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG +SPRW I++KF +A T + I IQIGRTG+LTP+A L P+NIGG ++T A+ Sbjct: 291 HILGATNKSPRWAIAYKFPAAEAKTLVNKISIQIGRTGVLTPIAELSPINIGGVIVTRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+ I+ +DIR GD V+VKRAG+VIP+VVD+ N R + F FP+ Sbjct: 351 LHNKSEIE-----------RKDIREGDYVIVKRAGDVIPQVVDVDKNLRAQELTKFIFPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S + + + + CTG L C Q LE++KHFVS+DAFNI G GK+QL Sbjct: 400 TCPSCGSNLFQ------AEQEVSIYCTGELFCKNQILEKIKHFVSKDAFNIIGFGKKQLL 453 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF++ I DIFTL+ + S K+E++ G+G+ S+ NL+ +IN + ISLE Sbjct: 454 FFYEQG----LITNIVDIFTLEEKISNSDLKLESLHGWGEKSIHNLFSAINNSKTISLEN 509 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG IA+ LAK++LSY+ + E+ + N L+ + +G ++ Sbjct: 510 FIFALGIRFVGKYIAKILAKHFLSYEKWYHEMLRLAQDEN----YLLNIQQIGHKTIHSL 565 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ N+ + L++ ++ + + ++S + K +VFTG L + RH+A+ Sbjct: 566 KMFFTEQHNLDTINNLVRHLTITDAKTTSHLSL-LHGKTIVFTGELSNMSRHEAKTKSET 624 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA VS+ LS+ TD +IVG+NPGSK +KAQ L ++I+ E+ +L Sbjct: 625 AGAKVSSSLSKNTDFLIVGNNPGSKYKKAQSLNIQILTEDLWL 667 >gi|114705256|ref|ZP_01438164.1| DNA ligase, NAD-dependent [Fulvimarina pelagi HTCC2506] gi|114540041|gb|EAU43161.1| DNA ligase, NAD-dependent [Fulvimarina pelagi HTCC2506] Length = 821 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 259/649 (39%), Positives = 383/649 (59%), Gaps = 47/649 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E L +A EL L +EI+ HD YY P + D++YDAL+RR AI FP L R Sbjct: 5 PVENLDETEAASELERLAREIAEHDRAYYGDDAPTLSDADYDALRRRNTAIEARFPALIR 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++ P+ ++G + + KV H++P LSL+ + ED+ F R+ R + +D + + Sbjct: 65 ADSPS---KRVGAAPSTTFAKVRHAVPMLSLDNAFTEEDVADFAKRVRRIAKLQDTDGLG 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 T EPKIDG +++RY G+ AA RGDG GEDV+ R + IP V P++ EV Sbjct: 122 ITAEPKIDGLSLSLRYVNGELETAATRGDGTVGEDVTPNARTVDDIP-VRIDRAPKVFEV 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGK 245 RGEVY++ DF ALN+ A G+ +ANPRNAA+G LR+ + ++TR L FF + G+ Sbjct: 181 RGEVYMAHADFAALNERQEAAGKPRFANPRNAAAGSLRQKD-AEVTRSRPLRFFAYAWGE 239 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE+ + Q E++ + GFPVN +++ T ++ +Y ++ R++L YDIDG+VYK Sbjct: 240 ASEVPGETQSEVVAAIGKFGFPVNELMQRFETIDALIEHYRRIEENRASLGYDIDGVVYK 299 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ LQK LG +R PRW I+HKFA ++A+T L ID+ GRTG L P+ARLEPV +GG Sbjct: 300 VDDLRLQKDLGFVSRFPRWAIAHKFAAEKATTVLKGIDVTTGRTGALNPIARLEPVTVGG 359 Query: 366 ALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 +++NATLHNEDYI G+DA G+ +R G DIR+GD V+++RAG+VIP+++D++ +R Sbjct: 360 VVVSNATLHNEDYIAGIDADGETIRPSGLDIRIGDTVVIQRAGDVIPQIIDVVAEKRPAG 419 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+PF FP+ C +C S VR++NP+TG+ + CT GL C AQ E LKH VSR AF+IE Sbjct: 420 AKPFVFPTHCAVCGSNAVREMNPRTGRPDSKRHCTAGLTCPAQGREGLKHLVSRSAFDIE 479 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF-------------- 530 GLG+ ++ F D +R PADIFTL + + + + Sbjct: 480 GLGETLVEALF---DEGL-VRQPADIFTLDFEKMKALLEERALAARREREAAEDEAARAE 535 Query: 531 -------GD-------VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 GD S N++D I+ RR + LERFIF LGI +VG A++LA++ Sbjct: 536 GREPKVRGDDRAYDYTKSTQNIFDGIDARRTLPLERFIFGLGIPNVGETTAKALARH--- 592 Query: 577 YQNFAQEINNIIAHN----NDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 + + A I + A W+ L + +G+ + I++ Q+ N Sbjct: 593 FSDVAALIGGVDAAEKGKPGSAWIELSALKGIGEKSFEQILDLDQSKLN 641 Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 71/124 (57%), Gaps = 3/124 (2%) Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKK 651 +L+L +G + Q+++ F+ N AV+ALLK + V+S + Sbjct: 689 YLNLTTDSDIGTVATQSLINFFAEDHNRQAVDALLKAGVSTTNERMTAVASNDSPVSGLT 748 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +VFTG+L+K+ R A+E LGA VS +S KTD+++ G GSKL KA +LG+++++E Sbjct: 749 IVFTGSLEKMTREAAKEMAEGLGAKVSGSVSNKTDLVVAGPGAGSKLSKASELGIEVIDE 808 Query: 712 EQFL 715 + + Sbjct: 809 DAWF 812 >gi|58038653|ref|YP_190617.1| NAD-dependent DNA ligase [Gluconobacter oxydans 621H] gi|81352629|sp|Q5FUI5|DNLJ_GLUOX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|58001067|gb|AAW59961.1| NAD-dependent DNA ligase [Gluconobacter oxydans 621H] Length = 683 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 276/701 (39%), Positives = 419/701 (59%), Gaps = 38/701 (5%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 ++LE +++ D+ Y+ +P + D+ YDA +R A+ A+PDL E G ++G Sbjct: 13 AALEADLAQWDEAYHGRDEPEVSDAVYDAARRELLALEEAYPDLRSQE---GASQRVGAT 69 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEPKIDGTMI 139 + + K H +P LSL+ +++ E F++R+ RF +D ++ F EPKIDG I Sbjct: 70 PDSAFGKYRHLVPMLSLDNVFDPEGFDGFVSRVGRFLGLDEDGLQALQFVAEPKIDGLSI 129 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ YE G FV RGDG GEDV+A + + IPR L PE +E+RGEV++SK+ FL Sbjct: 130 SLTYEHGHFVRGTTRGDGIEGEDVTANLLTLKDIPRELPGEAPERVEIRGEVFLSKSSFL 189 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAKGQYEM 257 LN++ +A G KP+ANPRNAA+G LR+L+ +ITR L+ F + G TS A ++ Sbjct: 190 TLNEQQVARGAKPFANPRNAAAGSLRQLD-AEITRSRPLSLFAYAQGYTSSPVATTHWDY 248 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K+R GF VN + I +Y ++ RS L YDIDG+V+K+D+ SLQ +LG Sbjct: 249 LEKLRSWGFTVNPLSQMIAHARDIPAYVEKLARERSELDYDIDGIVFKLDDLSLQDRLGF 308 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 R+PRW I+ KF +QA TRL +I+IQ+GRTG LTPVA LEPVN+GG +++ ATLHNED Sbjct: 309 AGRAPRWAIAWKFPAEQAITRLREIEIQVGRTGALTPVAHLEPVNVGGVIVSRATLHNED 368 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I +D+RVGD V ++RAG+VIP+++ + +E P ++PF +P CP+C Sbjct: 369 EI-----------ARKDVRVGDLVRLQRAGDVIPQILGPVPSE-EPRSEPFVYPDHCPVC 416 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S R A RCTGGL C AQ +ERL H VSR+AF+I+GLG++ + F+ Sbjct: 417 GSLAERVHGE------AVRRCTGGLTCEAQIVERLIHMVSRNAFDIDGLGERSIREFYD- 469 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A IR P DIF L++ ++ + G+G +SV NL+ +I RR I L R IF L Sbjct: 470 ---AGYIRRPGDIFRLRQHEEALLQRD----GWGRLSVDNLFRAIEDRRTIPLSRLIFGL 522 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH-NNDDWLSLIRVPLVGDIIAQAIVEFY 616 GIR +G A+ LA++Y +++N+ + + A ++++ SL + VGD IA + F+ Sbjct: 523 GIRRIGERNAQLLARHYQTFENWRTAM--LAARPDSEERASLGAIMGVGDAIADELSAFF 580 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 NI ++ L E+ I E + K +VFTGTL + R +A+ +LGA Sbjct: 581 SESHNIETLDDLALELKDIIA-EEAPSEGHLSGKVIVFTGTLTTMSRPEAKAIAERLGAQ 639 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 V+ +S+KT ++++G+ GSK +KA +LG++ ++E + L Sbjct: 640 VTDSVSKKTSLVVLGEKAGSKAKKAAELGIETVDESGWRVL 680 >gi|157826142|ref|YP_001493862.1| NAD-dependent DNA ligase LigA [Rickettsia akari str. Hartford] gi|166216231|sp|A8GPM9|DNLJ_RICAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157800100|gb|ABV75354.1| DNA ligase [Rickettsia akari str. Hartford] Length = 689 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 272/715 (38%), Positives = 415/715 (58%), Gaps = 35/715 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ +S +A+K L L +I+ ++ YY P++ D+EYD L + FP L Sbjct: 4 IDFISEAEAKKLLEELSCKIAAYNHAYYIEDNPLVSDAEYDQLVNINLKLEQQFPHLVLE 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 N P ++G ++ KVTH +P LSL ++ +D+R F+ RI F + + IF Sbjct: 64 ---NSPSKEVGAKIANKFVKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPIF- 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 EPKIDG + Y+ G + A RGDG+ GED++A I+ I P + N PE +EVR Sbjct: 120 -CEPKIDGLSFSAIYKNGLLITGATRGDGYVGEDITANIKTIKNFPHKID-NAPECLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+YI K DFL LN+E GR +ANPRNAA+G LR+L+ + R L +FV+ G T Sbjct: 178 GEIYIEKQDFLNLNEEQEEQGRDQFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTE 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q ++L K++ GF VN + + I ++Y +K+ R LPY+IDG+VYK++ Sbjct: 238 QNLASSQDQLLTKLKKFGFSVNEISKLTKSEEEIFAFYEYLKTNRENLPYEIDGVVYKLN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F LQ ++G ARSPR+ +HKF T+LL I +Q+GRTG LTPVA LEP+ IGG Sbjct: 298 DFELQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN +++R +D+++ D V ++RAG+VIPK+ + +R D Sbjct: 358 VSRATLHN---------FQEIVR--KDVQIKDYVFLQRAGDVIPKITGADIEKRPNDTIA 406 Query: 428 FSFPSFCPICQSR---VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 F P FCP C S+ V D+ RC GL C AQ ER++HFVS++A +I Sbjct: 407 FEAPLFCPSCNSKLYYVPEDI---------IIRCDNGLNCPAQHYERIRHFVSKNAMDIA 457 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++F I P DIF L++ + S K+EN+ G+G SV L +I K Sbjct: 458 GLGRKQVEFLIAKG----LISNPLDIFFLKKNNEASLIKLENMDGWGQKSVEKLLKNIEK 513 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +N+SL RFI++LGIRH+G + A+ LA+ + SY NF ++ + +++D + L + + Sbjct: 514 SKNVSLPRFIYALGIRHIGEQNAKLLAREFGSYNNFIAQMELLSKNDSDIYQKLNNLEGI 573 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 GD I I+ F NI ++ L E+ E S + K +VFTG+L I R Sbjct: 574 GDKILIDIIAFLDVKENIQLIKK-LGEILNIEDYKETRAQSSLTGKIVVFTGSLPTISRA 632 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + +LGA V+A +S TD+++ G + GSKL+KA++L +KI++EE++L L++ Sbjct: 633 EVKATAEKLGAKVAASVSSNTDLVVAGLDAGSKLQKAKELNIKIIDEEEWLTLIK 687 >gi|85374270|ref|YP_458332.1| DNA ligase [Erythrobacter litoralis HTCC2594] gi|123409617|sp|Q2N9V6|DNLJ_ERYLH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|84787353|gb|ABC63535.1| DNA ligase [Erythrobacter litoralis HTCC2594] Length = 736 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 286/753 (37%), Positives = 416/753 (55%), Gaps = 82/753 (10%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E LS +A EL L ++I+ HD Y+ P I D EYDAL RR + AFP L R Sbjct: 5 LENLSEAEAANELMRLARQIAKHDRLYHAEDAPEITDQEYDALVRRNAELEAAFPHLVRE 64 Query: 69 EDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P+ K+G + S L KVTH + +SL+ + E++ +F+ R+ R+ +D +I Sbjct: 65 DSPS---RKVGHAVAASPLSKVTHEVRMMSLDNAFADEEVAEFVARVRRYLNIGEDEAIA 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--------- 178 FT E KIDG ++RYE GK V AA RGDG GEDV+ + I IP+ L+ Sbjct: 122 FTAEDKIDGLSCSLRYENGKLVRAATRGDGQVGEDVTPNVAHIGDIPQELTPLPLAGGAG 181 Query: 179 ----------------------LNIPEIIEVRGEVYISKNDFLALNDEMIAVGR------ 210 N P + E+RGEVY++ DF ALN ++ R Sbjct: 182 GGPLDDSGSAPTPDPSRRREGKWNGPAVFEIRGEVYMATADFHALNARLMDEARAEADEK 241 Query: 211 ---------KPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQ 259 + +ANPRNAA+G LR+ + + TR L F+ HG G ++ + Q E+++ Sbjct: 242 DNAFDTAKVRQFANPRNAAAGSLRQKDASVTATRPLRFWAHGWGAVEGDVPGETQVEVVE 301 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 ++ G PV+ R+ T ++++Y + + R+ LPY+IDG+VYKVD Q++LG A Sbjct: 302 QIAAWGVPVSPLFRRCETLEEMLAHYEAIGAQRADLPYEIDGVVYKVDRLDYQQRLGFVA 361 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 ++PRW I+ KF +QA T L +IDIQ+GRTG LTPV RL PV +GG +TN TLHN D I Sbjct: 362 KAPRWAIARKFPAEQAETTLENIDIQVGRTGKLTPVGRLAPVLVGGVTVTNVTLHNRDEI 421 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 + L +R GDRV+V+RAG+VIP+VV + + D+ F FP CP C S Sbjct: 422 ERL-----------GVRPGDRVVVQRAGDVIPQVVRNLTPDEKRDS--FEFPDTCPECGS 468 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 V + + G V RCTGGL C AQ+ ERLKHFVSR A +I+GLG++ +D FF Sbjct: 469 EAVSE---EGGVDV---RCTGGLICPAQRTERLKHFVSRAALDIDGLGEKTIDQFFA--- 519 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 + PADIF L+ R+ +I + G+ D SV NL S+ RR R + LGI Sbjct: 520 -LGWLESPADIFRLKDRRD----EILALEGWMDKSVDNLLASVEARREPDTARLLLGLGI 574 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 RHVGA AR L KY+ + A + + ++L + +G + +A+ +F+ Sbjct: 575 RHVGAVTARDLMKYFHELPALRETAEKARAGDEEAVVALTSIDGIGSAVVEALGDFFHEE 634 Query: 620 RNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 N + LL EVSP R+E + + S + K +VFTG L+ + R +A+ +LGA S Sbjct: 635 HNRAVWDDLLSEVSPP--RYEVETLDSPVAGKTVVFTGKLETMSRDEAKAQAERLGAKAS 692 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +S KTD+++ G GSKL+KAQ LG+++++E Sbjct: 693 GSVSAKTDLLVAGPGAGSKLKKAQDLGIEVIDE 725 >gi|329889238|ref|ZP_08267581.1| DNA ligase, NAD-dependent [Brevundimonas diminuta ATCC 11568] gi|328844539|gb|EGF94103.1| DNA ligase, NAD-dependent [Brevundimonas diminuta ATCC 11568] Length = 774 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 263/598 (43%), Positives = 364/598 (60%), Gaps = 32/598 (5%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 P+E L+ QAR+EL L E++ HD YY + P I D++YD LKRR A+ AFP L Sbjct: 5 FTPVETLTEAQAREELDRLSAELARHDALYYADAAPEISDADYDELKRRALALEAAFPAL 64 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P P ++G ++ +V H +P LSL+ ++ ++R F+ RI RF + D Sbjct: 65 S---GPISPSQRVGAPVSTQFAEVRHGVPMLSLDNAFDEGEVRDFVARIARFLKLPGDEP 121 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEI 184 I F EPKIDG ++RYEKG V A RGDG +GEDV+A +R + +IP+ L+ P++ Sbjct: 122 IAFVAEPKIDGLSASLRYEKGVLVQGATRGDGKTGEDVTANLRTLDSIPQTLAGSGWPDV 181 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG 242 IE+RGEVY F A N A G++ YANPRN A+G LR+ +P IT R L FF + Sbjct: 182 IEIRGEVYAPNAAFDAFNAAAEAEGKRTYANPRNFAAGSLRQKDPK-ITALRPLTFFAYA 240 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+TS FA+ Q L+ R GF VN+ + G++ Y +++ RS L YDIDG+ Sbjct: 241 WGETSAPFAETQAGALEAFRSWGFQVNDRSARVEGADGLIGVYQTLETDRSRLGYDIDGV 300 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYKVD Q++LG ARSPRW I+HKF +QA+T L IDIQ+GRTG LTPVARL PV Sbjct: 301 VYKVDRLDWQQRLGFIARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHPVT 360 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG ++ NATLHNED I +D+RVGD V+++RAG+VIP++V ++ R Sbjct: 361 VGGVVVRNATLHNEDEI-----------ARKDVRVGDTVVLQRAGDVIPQIVGVVETLRP 409 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 DAQP+ FP+ CP+C S VR+ + RCTGGL C AQ +ERLKHFVSR AF+ Sbjct: 410 DDAQPYIFPTVCPVCGSEAVREGDE------VKRRCTGGLICDAQIVERLKHFVSRRAFD 463 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR-RQQTSTTKIENILGFGDVSVTNLYDS 541 IEGLG++QL F I+ PADIF L R ++ + + E+ G+G+ SV NL Sbjct: 464 IEGLGEKQLIAFHARG----WIKEPADIFRLARDEEKLALLRAED--GYGETSVGNLIAG 517 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH-NNDDWLSL 598 I+ RR ISL+R IF LG+R +G + + L++ + S+ F + +DDW +L Sbjct: 518 IDARRVISLDRLIFGLGVREIGEQTSLVLSRAFGSWTAFRDACMAAASGLASDDWKTL 575 Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 1/165 (0%) Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR-VPLVGDIIAQAIV 613 +L + A RSLA+ + + + D L+ I V VG + A+A+ Sbjct: 609 IALAFPGMAAPARRSLAEISEGWSDLTRWAAVARDEGPSDMLNQIAGVSGVGPVAAEALA 668 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+ P N+ V+ALL E+ S + K +VF+G+L++ R +A+ L Sbjct: 669 HFFHEPHNLQVVDALLAELERVEDVAAPVTDSPVAGKTVVFSGSLERFTRDEAKARAESL 728 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 GA VS +S+KTD ++ G GSKL+ A++ GV ++ E+++L L+ Sbjct: 729 GAKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVTVLTEDEWLALI 773 >gi|330994412|ref|ZP_08318338.1| DNA ligase [Gluconacetobacter sp. SXCC-1] gi|329758538|gb|EGG75056.1| DNA ligase [Gluconacetobacter sp. SXCC-1] Length = 712 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 274/705 (38%), Positives = 398/705 (56%), Gaps = 35/705 (4%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A K L+ L + D Y+Q+ P++ D+ YD+L++ + FPDL R+ + P Sbjct: 31 AEKALTQLATLLPALDAAYHQHDAPLVDDATYDSLRQLNTRLEARFPDLRRT---DSPAQ 87 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--IFFTLEPKI 134 ++G + H +P LSL+ +++ E+ FI+RI RF ++ + + F EPKI Sbjct: 88 QVGAPATGPFRRHRHMVPMLSLDNVFSREEFEGFISRIARFLGLDEEQARQLSFVAEPKI 147 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I++ YE G+FV RGDG GEDV+A +R + IP L P++IE+RGEV++S Sbjct: 148 DGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDIPDQLPAPCPDVIEIRGEVFLS 207 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252 K FL LN G +P+ANPRNAA+G LR+L+ IT R L+ F + G S A Sbjct: 208 KQAFLELNAAQERAGDRPFANPRNAAAGSLRQLD-AGITARRPLSLFAYAAGYCSAPLAA 266 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + L ++ GF VN Q ++ + RS L YDIDG+VYK+D+ +LQ Sbjct: 267 THHGYLAQLAAWGFRVNPLSTQVKDAGAAEAFMERLTLERSALDYDIDGIVYKLDDRALQ 326 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG R+PRW ++ KF +QA TRL IDIQ+GRTG LTPVA LEPVN+GG ++T A+ Sbjct: 327 ERLGFAGRAPRWAVAWKFPAEQAVTRLEKIDIQVGRTGALTPVAFLEPVNVGGVMVTRAS 386 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I +DIR GD V V+RAG+VIP+V +++ H D P+ FP Sbjct: 387 LHNEDEIT-----------RKDIREGDLVHVQRAGDVIPQVTGVVLPRDH-DRPPYRFPH 434 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + R G++V RC+GGL C AQ +ERL HFVSRDAF+IEGLG + + Sbjct: 435 VCPACGAHAER----PEGEVV--WRCSGGLTCPAQVVERLIHFVSRDAFDIEGLGDRTIV 488 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F + +R PADIF L + +I + G+G VS NL +I RR I L R Sbjct: 489 EFHE----LGWLRTPADIFRLDAHE----AEIASRDGWGRVSAHNLVTAIAARRTIELSR 540 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 I++LGIR +G AR LA++Y S N+ ++ +D L L + +G IA + Sbjct: 541 LIYALGIRRIGINNARLLARHYGSLANWRAQMEKAAVIGSDARLELGSITGIGTAIADEL 600 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 V F+ N ++ L V + + + + +VFTGTL + R +A+ + Sbjct: 601 VAFFAEAHNRATLDD-LTHVLDHVTDEQAVAEGTLSGRTIVFTGTLTTMTRPEARAVAER 659 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LGA VS +S KTD++++G+ GSK KA +LG++ M+E + L Sbjct: 660 LGARVSDSVSTKTDLVVLGEKAGSKARKAAELGIRTMDEAGWRVL 704 >gi|85702769|ref|ZP_01033873.1| DNA ligase, NAD-dependent [Roseovarius sp. 217] gi|85671697|gb|EAQ26554.1| DNA ligase, NAD-dependent [Roseovarius sp. 217] Length = 866 Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust. Identities = 287/706 (40%), Positives = 407/706 (57%), Gaps = 47/706 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ ++AR EL+ L ++ + Y+ P I D+ YDALK R AI P L Sbjct: 5 IAVEDLTEDEARTELARLAALLAEANRAYHTEDAPEITDAAYDALKARNAAIEARLPALK 64 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R++ + +++G + KVTH I LSL + D+ +F TRI R+ DD + Sbjct: 65 RADSAS---DQVGAAPSDGFAKVTHRIRMLSLGNAFEAGDVAEFDTRIRRYLGLADDAPL 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 +T EPKIDG +++RYE+G+ V AA RGDG GE+V+A I IP L+ PE++E Sbjct: 122 AYTAEPKIDGLSLSLRYEQGRLVQAATRGDGEVGENVTANAHTIADIPETLT-GAPEVLE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S DF ALN A K +ANPRNAA+G LR+L+ T R L FF + G+ Sbjct: 181 VRGEVYMSHADFAALNARQAAKSDKSFANPRNAAAGSLRQLDATITAARPLRFFAYSWGE 240 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A Q + ++ LGF N + +++ Y ++ R+TL YDIDG+VYK Sbjct: 241 LSAPLADTQMGAIDRLAALGFQTNPLTVLCDGTEALLAQYARIEQARATLGYDIDGVVYK 300 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 301 VDDLGLQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG 360 Query: 366 ALITNATLHNEDYIKGLDASGKVMR-----GGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 +++NATLHNEDYI G D+ G V+R +DIRVGD V V RAG+VIPK+ D+ + + Sbjct: 361 VVVSNATLHNEDYIAGRDSKGAVIRPDENGNAKDIRVGDWVQVYRAGDVIPKIADVDLTK 420 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R +A PF FP+ CP C S VR+ A RC GGL C AQ +E+LKHFVSR A Sbjct: 421 RPENAAPFIFPTTCPECGSDAVREEGD------AVRRCMGGLICPAQAVEKLKHFVSRAA 474 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 F+IEGLG +Q++ F+ D I+ PADIFTL+ R + TK+ N G+G+ SV L++ Sbjct: 475 FDIEGLGAKQIEMFYN--DDQLPIKQPADIFTLKERDGKNLTKLANREGWGEKSVAKLFE 532 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA--------QEINNIIAH-- 590 +I RR++ L RFIF+LGI +VGAE+++ LA ++ S+ Q I I H Sbjct: 533 AIEARRSVELPRFIFALGIPNVGAEVSKDLANFHGSWTALVQANDDVKNQRIQTAIEHWS 592 Query: 591 -----NNDDWLSLIRVPLVGDIIAQAIVEFYQNP---RNICAVEALLKEVSPSIGRHEKN 642 N+ +WL ++ V + + + + F+ + + V LL + +G+ Sbjct: 593 RINISNDTNWLEVVE---VANELREFELSFWDRLYAYKGVAGV-GLLANLRKFLGKSLTK 648 Query: 643 VSSEIENKKLVFTGTLQKIQRHK-----AQEYVTQLGAVVSAILSR 683 VS E K VF T + +R+ A+E LGA +L + Sbjct: 649 VSDEQATK--VFDATFKNTKRYSTKYEAAKEQFGSLGAFKEELLQK 692 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 2/120 (1%) Query: 601 VPLVG--DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 +PLVG + +I+ F+ N N+ AV ++LK V P + S I K +VFTGTL Sbjct: 744 LPLVGHGQVTVDSIIRFFGNNNNVAAVNSILKYVDPKEFEKQAITDSSIYGKTVVFTGTL 803 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +K+ R +A+ LGA V+ +S KTD++I G GSK +KA +LG++ ++E+ +L L+ Sbjct: 804 EKMTRAEAKARAEGLGAKVAGSVSAKTDLLIAGPGAGSKAKKAAELGIETIDEDGWLALI 863 >gi|296285034|ref|ZP_06863032.1| DNA ligase [Citromicrobium bathyomarinum JL354] Length = 733 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 284/747 (38%), Positives = 412/747 (55%), Gaps = 78/747 (10%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E LS +A EL L + I H+ Y+ P I D EYDAL RR +A+ AFPDL R Sbjct: 9 EPLSEAEAANELMRLARTIRKHNRLYHAEDAPEITDQEYDALVRRNEALEAAFPDLVR-- 66 Query: 70 DPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P +G E+ S L KVTH++ +SL+ +N E++ +++ R+ RF + D I F Sbjct: 67 -PDSPSKGVGHEVAGSPLSKVTHAVRMMSLDNAFNGEEVGEWVARVRRFLDLEVDTPIAF 125 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T E KIDG ++RYEKG+ V AA RGDG GEDV+A + I IP L+ + P++ EVR Sbjct: 126 TAEDKIDGLSCSLRYEKGQLVRAATRGDGQVGEDVTANVAHIADIPAQLTGDAPDVFEVR 185 Query: 189 GEVYISKNDFLALNDEMIAVGR---------------KPYANPRNAASGILRRLNPT-DI 232 GEVY+ + F LN ++ R + +ANPRNAA+G LR+ + + Sbjct: 186 GEVYMERAAFADLNTRLMDEARAAASEKGEEFDPAKARQFANPRNAAAGSLRQKDASVTA 245 Query: 233 TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR 292 R L F+ HG G+ S++ + Q ++++ + G PV+ + ++ +Y + S R Sbjct: 246 KRPLRFWAHGWGEASQVPGETQTDVIRAIEAFGLPVSPQFTRVEGLDALLDHYETIASAR 305 Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352 LPY+IDG+VYKVD Q++LG A++PRW ++HKF ++A T L IDIQ+GRTG L Sbjct: 306 PDLPYEIDGVVYKVDRLDWQERLGFVAKAPRWALAHKFPAERAETTLEAIDIQVGRTGKL 365 Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412 TPV RL PV +GG +TN TLHN D I L +RVGDRVL++RAG+VIP+ Sbjct: 366 TPVGRLAPVLVGGVTVTNVTLHNRDEIARL-----------GLRVGDRVLIQRAGDVIPQ 414 Query: 413 VVDIIVNERHPDAQ--PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 VV+ + PDAQ F FP CP C S V + + RCTGGL C AQ+LE Sbjct: 415 VVENLT----PDAQRERFEFPETCPECGSEAVAEEDE------VDVRCTGGLICPAQRLE 464 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 R+KHFVSR A +IEG+G++ + F + + PADIF L++R+ +I + G+ Sbjct: 465 RMKHFVSRGALDIEGMGEKTIAEFLER----GWLESPADIFRLRKRRD----EILALEGW 516 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF---AQEINNI 587 D SV NL +I +R R +F LGIRHVGA AR L K + A E + Sbjct: 517 QDKSVDNLLAAIEAKRAPDAARLLFGLGIRHVGAVTARDLLKGLGDIRKLPGKAAEFHRY 576 Query: 588 IAHN---NDDWLSL--------------IRVPLVGDIIAQAIVEFYQNPRN------ICA 624 N D+ +S +R +G + A+ +F+ N + Sbjct: 577 RIENPRGEDEKVSPFNARMLDAVRRIYEVRADGIGTAVGHALADFFHEEHNRQVWDDLIG 636 Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 E EV P + E V S + K +VFTG L+ + R +A+ +LGA + +S K Sbjct: 637 AEPGAGEVDPPVYEVE-TVESPVAGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAK 695 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNE 711 TD+++ G GSKL+KA++LG+++++E Sbjct: 696 TDLLVAGPGAGSKLKKAEELGIEVIDE 722 >gi|296532809|ref|ZP_06895486.1| NAD-dependent DNA ligase LigA [Roseomonas cervicalis ATCC 49957] gi|296266870|gb|EFH12818.1| NAD-dependent DNA ligase LigA [Roseomonas cervicalis ATCC 49957] Length = 719 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 293/739 (39%), Positives = 422/739 (57%), Gaps = 60/739 (8%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 +P+ AL+ QA +EL++L Q I+ D Y+Q P+I D+EYDAL+RR AI FP L Sbjct: 8 LPVTALTEAQAAEELAALAQAIAEADLAYHQQDAPVITDAEYDALRRRNAAIEARFPALK 67 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R++ P+ + + H P LSL+ + ED +F I RF + + + Sbjct: 68 RADSPSDASPGAAPAAGFAKAR--HGTPMLSLDNAFAPEDFLEFTKSIRRFLRLDEAELL 125 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP--TIPRVLSLNIPEI 184 F EPKIDG + + YE G FV A RGDG GED++ + +PR L+ PE Sbjct: 126 RFVAEPKIDGLSVNLTYENGVFVRGATRGDGTEGEDITRNLETFSDKNLPRRLAAPFPEQ 185 Query: 185 IEVRGEVYISKNDFLALNDEMIA--------------VG---RKPYANPRNAASGILRRL 227 IE+RGEV+++K DF+A DE VG R P ANPRNAA+G LR+L Sbjct: 186 IEIRGEVFMTKADFIAFRDEQARLAEEREQRRERGEKVGPEIRIP-ANPRNAAAGSLRQL 244 Query: 228 NPTDITRY--LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYY 285 +P +ITR L F + G++S A+ L ++ GF VN R H ++ Sbjct: 245 DP-EITRQRPLRLFAYAQGESSAPVAETHSGYLARLAEWGFDVNPLSRALPDEHAAEAFQ 303 Query: 286 NEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345 EM + R+ L YDIDG+VYK+D Q +LG R+PRW I+ KF +QA TRLLDI IQ Sbjct: 304 AEMAAQRAGLAYDIDGVVYKLDRLDWQARLGFVGRAPRWAIAWKFPAEQAMTRLLDIQIQ 363 Query: 346 IGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405 +GRTG LTP A ++PVN+GG ++ +ATLHNED I +D+R+GD V+++R Sbjct: 364 VGRTGALTPRAVMQPVNVGGVMVQHATLHNEDEI-----------ARKDVRIGDTVILQR 412 Query: 406 AGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACS 465 AG+VIP++V I+ +R +A PF+FP+ CP C S VR G++V RCTGGL C Sbjct: 413 AGDVIPQIVGIVPEKRPAEAVPFAFPTTCPACGSHAVR----PEGEVV--RRCTGGLICP 466 Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE 525 AQ +ERLKHFV R A +IEGLG++ + + + ++ PADIF L R + ++ Sbjct: 467 AQTVERLKHFVGRTAMDIEGLGEENI---LRLHEEGL-VKSPADIFRLHRHAE----RMR 518 Query: 526 NILGFGDVS-----VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580 G+G + V NL +I RRN LERFIF+LGIR +GA+ A+ LA++Y S + Sbjct: 519 GWEGWGKGAKTSKKVDNLLAAIEARRNPPLERFIFALGIRRIGAQNAKLLARHYHSLAEW 578 Query: 581 AQEI--NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638 ++ II + L I+ VG IA + EF+ RN A++ L +EV+P Sbjct: 579 RAKMLAATIIGSEAREELGSIQG--VGPAIATELAEFFAEQRNRDALDDLAREVTPQDAE 636 Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 ++ S K +VFTGTL++ R +A+ +LGA V+ +S+KTD ++VG + GSK Sbjct: 637 RLES-DSPFAGKVVVFTGTLERSSRDEAEAVADRLGAKVTKSVSKKTDFVVVGADAGSKA 695 Query: 699 EKAQQLGVKIMNEEQFLFL 717 +KA +LGV+ + E ++ L Sbjct: 696 KKAAELGVRTLTEPEWRAL 714 >gi|89094416|ref|ZP_01167356.1| DNA ligase [Oceanospirillum sp. MED92] gi|89081308|gb|EAR60540.1| DNA ligase [Oceanospirillum sp. MED92] Length = 674 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 278/723 (38%), Positives = 423/723 (58%), Gaps = 67/723 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +SIEQ L L ++++H+ YY P + D+EYD L R + P+L +ED Sbjct: 1 MSIEQ---HLQQLRDQLNHHNYQYYVLDDPEVPDAEYDRLFRELKKLESDNPELI-TED- 55 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G + +V+H +P LSL+ +N ED+ +F RI ++ +I + E Sbjct: 56 -SPTQRVGSTPLSAFSQVSHELPMLSLDNAFNDEDMEEFDRRIKDRLNMQE--TISYACE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG +++ YE+G V A RGDG +GED++ +R IPTIP ++ N P+ +EVRGE Sbjct: 113 PKLDGIAVSLLYEQGLLVRGATRGDGSTGEDITQNVRTIPTIPLKLTGDNFPDRLEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-------PTDITRYLNFFVHG- 242 +Y+ K F ALND+ A G+K + NPRNAA+G LR+L+ P ++ Y V G Sbjct: 173 IYMPKAGFDALNDKARATGQKTFVNPRNAAAGSLRQLDSRITASRPLEMCSYSVGVVEGG 232 Query: 243 --LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 GK SEI A+ ++ GF +N + G + YY + +R TLPY+ID Sbjct: 233 ALAGKHSEILAQ--------LKEWGFRLNPLLESVEGVAGCLDYYRRISELRDTLPYEID 284 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V+KVD+ LQ++LG +R+PRW I+HKF ++ T + I+ Q+GRTG +TPVARLEP Sbjct: 285 GVVFKVDQLELQQRLGFVSRAPRWAIAHKFPAQEELTSIRSIEFQVGRTGAVTPVARLEP 344 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GG ++NATLHN D I+ L D+R GD V+++RAG+VIP+VV ++ + Sbjct: 345 VFVGGVTVSNATLHNMDEIERL-----------DVRAGDTVVIRRAGDVIPQVVRVLHEK 393 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R D + P CPIC+S++ R G+ VA RC+GGL C AQ+ E LKHF SR A Sbjct: 394 RPADTEAVIIPDACPICESKIER----IEGEAVA--RCSGGLYCEAQRKEALKHFASRKA 447 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+GLG + ++ + + PAD++ L QQT ++E + G S NL + Sbjct: 448 MDIDGLGDKLIEMLVDLD----MVHNPADLYAL---QQTELARLERM---GPKSAENLVN 497 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I RN L RF+++LGIR VG ARSLA ++L ++ +I + + +L+ Sbjct: 498 AIQASRNTELPRFLYALGIREVGEATARSLAMHFL-------DLPALIEASEE---ALLE 547 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTL 658 VP VG I+A+ I F+Q NI ++AL ++ VS S+ + S I + V TG L Sbjct: 548 VPDVGPIVAKHIKSFFQQSHNIEVLDALREKAGVSWSVLETKDEESQPISGETWVLTGKL 607 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL-FL 717 +++ R +A+ Y+ +LGA V+ +S KTD ++ G GSKL+KA +LG+K M+E+ F+ FL Sbjct: 608 EQMGRSEAKNYLLELGAKVAGSVSAKTDCVVAGPGAGSKLKKATELGIKTMDEDSFVSFL 667 Query: 718 LQQ 720 +Q Sbjct: 668 AEQ 670 >gi|254456450|ref|ZP_05069879.1| DNA ligase, NAD-dependent [Candidatus Pelagibacter sp. HTCC7211] gi|207083452|gb|EDZ60878.1| DNA ligase, NAD-dependent [Candidatus Pelagibacter sp. HTCC7211] Length = 676 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 269/711 (37%), Positives = 423/711 (59%), Gaps = 49/711 (6%) Query: 18 RKELSSLEQE----ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +KE+ L QE ++ ++ YY +KP+I D YD LK ++ + LA + P+ Sbjct: 3 KKEIQKLYQEKIKLLNKYNQYYYDKNKPLIDDKNYDELKISILSLEKKYNFLASKKSPSE 62 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 G + + + K H +P LSL ++ EDL F +I F + ++ ++++ EPK Sbjct: 63 I---TGYKPSKNFKKSAHKVPMLSLANAFSEEDLINFEKKILNFLSENENFKLYYSAEPK 119 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192 IDG ++ Y+ GKFV RGDG GED+++ + I IP+ +S N PE I++RGEV+ Sbjct: 120 IDGISASLTYKNGKFVKGLSRGDGKEGEDITSNLETIKDIPKKISNKNFPEEIDIRGEVF 179 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251 I +DF D+ +ANPRNAASG LR+ +P D ++ L F + G ++ Sbjct: 180 IKNSDFENFKDK--------FANPRNAASGSLRQKDPNDTSKIPLKFIAYTFGYEKKLNI 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q++ L+++ GF N + + ++ YNE++ R+ + +DIDG+VYKV+ F L Sbjct: 232 DNQFDFLKRLNEWGFKTNPLNKLISGVKNLLINYNEIEKKRAEIDFDIDGIVYKVNNFKL 291 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 QK+LG A +PRW ++HKF+ +A ++++ IDIQIGRTG LTPVA+++PVNIGG ++NA Sbjct: 292 QKRLGNVANAPRWAVAHKFSSNKAVSKIISIDIQIGRTGALTPVAKIKPVNIGGVQVSNA 351 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED ++MR +D+RVGD V+V+RAG+VIP ++ + +N+R + F FP Sbjct: 352 TLHNED---------EIMR--KDVRVGDTVVVERAGDVIPHILTVDINKRSKKSIKFVFP 400 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 CP C S+ ++ N T K A RCT G C +E+LKHFVS++AFNIEGLGK+ Sbjct: 401 KKCPSCGSKTTKEYNEITKKNDAVRRCTSEGYECEKISIEKLKHFVSKEAFNIEGLGKKI 460 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F+K + IR+P DIF L +IEN+ G+G +SV NL SIN+++NISL Sbjct: 461 IENFWKLK----LIRLPQDIFRLD------YNRIENLEGWGRLSVENLKYSINEKKNISL 510 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER I++LGIRH+G E A+ L+K++ ++ NF + N ++ L+ V +G+ Sbjct: 511 ERLIYALGIRHIGLENAKLLSKFFKTFSNFKE------LSNKSNYNDLLNVDKIGETQVS 564 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I F+ N N + L KE+S EK + ++N + TG L I R + + + Sbjct: 565 SIKSFFSNKINNEIINQLSKELSIKNTLIEKK-NGLLKNYTFMITGKLSGISRAEIKSLI 623 Query: 671 TQ-LGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQ 719 + G+ VS++ ++K D +I+GD P K+E A++L +KI+N+ QFL +L Sbjct: 624 EENSGSTVSSV-TKKLDYLIIGDKPTKRKIETAKELRIKIINQSQFLKMLN 673 >gi|78485583|ref|YP_391508.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2] gi|123741582|sp|Q31G89|DNLJ_THICR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78363869|gb|ABB41834.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2] Length = 672 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 269/714 (37%), Positives = 410/714 (57%), Gaps = 50/714 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q +K L + ++ H YY PII D +YD L ++ I PD P P Sbjct: 2 QDQKAYQKLVESLNQHSYQYYVLDDPIISDPQYDVLYQKLLRIEDEHPDWIL---PESPS 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +IG E V H++P SL+ + ++L+ F+ RI + D S+ F+ EPK+D Sbjct: 59 QRIGDEPLKEFHTVRHAVPMYSLDNAFEDDELKSFLKRIEE--KLPDQKSLAFSAEPKMD 116 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G I IRYE G+ V A RGDG GEDV+ IR I ++P ++ N PE++EVRGEV++S Sbjct: 117 GLAINIRYENGQLVQATTRGDGQVGEDVTHNIRPIYSVPLKLFGNNWPEVVEVRGEVFMS 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K+ F LN+ +G K +ANPRNAA+G LR+L+ R+L+FF++G G+ S+ + Sbjct: 177 KSAFEQLNEHQQEIGGKIFANPRNAAAGSLRQLDSKVAAKRHLSFFLYGWGELSDDWQLP 236 Query: 254 QY--EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 QY EM++++ G P N + G+ +YY ++++ RS LPY+IDG+VYK+++ L Sbjct: 237 QYYSEMIEQLVEWGLPANPQSEIISGLEGMFAYYEKIQAKRSELPYEIDGIVYKLNDIKL 296 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG AR+PRW I+ KF ++ T+LLDI++Q+GRTG +TPVARL+PV++GG +++NA Sbjct: 297 QQQLGFTARAPRWAIARKFPAEEVWTKLLDIEVQVGRTGAITPVARLQPVSVGGVIVSNA 356 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D IK +D+R+GD V+V+RAG+VIP+VV I+ +R + Q F P Sbjct: 357 TLHNMDEIK-----------RKDVRIGDTVIVRRAGDVIPEVVGPILTQRPENTQLFEMP 405 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C S VV++L+ A RCTGGL C AQ+ L HFVSR A +I+GLG + + Sbjct: 406 QHCPECGSDVVKELDK------AVFRCTGGLVCPAQRKRALHHFVSRKAMDIQGLGDKLI 459 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D D + ++ P D + L + K+ + + S N+ I +L Sbjct: 460 DQLV---DKGW-VKHPDDFYHL------TVEKLATLERMAEKSAQNVITGIQASLETTLA 509 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +FI+SLGI VG A++LA ++ Q E +I N+ VG+++A+ Sbjct: 510 KFIYSLGIPEVGEVTAKNLANHFKDLNAIKQAEFEELITLND-----------VGEVVAE 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 IV F++ P N ++ LL P+ N S NK +V TGTL ++ R +A+ Sbjct: 559 HIVNFFKEPHNESVIQGLLDAGMHWPTPETTLVNEDSPFANKVVVLTGTLSEMSRPEAKV 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + GA ++ +S KTD +I G+ GSKL KA+ LGV +++E ++L ++ Q + Sbjct: 619 LLEAQGAKITGSVSAKTDYVIAGEKAGSKLTKAESLGVAVLSEAEWLAMMPQQD 672 >gi|145589636|ref|YP_001156233.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|190359270|sp|A4SYV5|DNLJ_POLSQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145048042|gb|ABP34669.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 671 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 275/701 (39%), Positives = 405/701 (57%), Gaps = 50/701 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L+ E++ + YY P++ D EYD L R I A P SE + ++GG Sbjct: 16 LQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAAHPQWVTSESLS---QRVGGTAL 72 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 VTH++P LSL + +L F R + + + E K DG I++RY Sbjct: 73 KEFDSVTHAVPMLSLNNAFEDSELIAFDRRCREALHVE---HVAYAGELKFDGLAISLRY 129 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALN 202 E G V AA RGDG SGEDV+A I+ I IP ++ NIPEI+EVRGEV++ DF +N Sbjct: 130 ENGTLVTAATRGDGASGEDVTANIKTIRAIPLKLTGKNIPEILEVRGEVFMYLKDFEKMN 189 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKGQYEML 258 + +G K +ANPRNAA+G LR+L+ + IT R L+FF +GLG + K E+L Sbjct: 190 RQAAELGEKEFANPRNAAAGSLRQLD-SKITAKRPLSFFAYGLGALEPQSWLPKTHEELL 248 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 LG PV + R ++ I+++YNE+ + R +LPYDIDG+VYKV+ F+ Q +LG Sbjct: 249 NAYVELGLPVCSERRVLHSVEEILAFYNEIGAKRDSLPYDIDGVVYKVNSFAEQAKLGFV 308 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +R+PR+ ++HK+ ++A T +L ID+Q+GRTG +TPVARL PV +GG +TNATLHNED Sbjct: 309 SRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVGGVTVTNATLHNEDE 368 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 +K +D+R+GD V V+RAG+VIP+VV +I R DA+ F PS CP+C Sbjct: 369 VK-----------RKDVRIGDTVSVRRAGDVIPEVVSVIKERRPSDAKEFVMPSRCPVCD 417 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S + R + A RC+GGL C AQ+ + L HF R A +IEGLG++ +D Sbjct: 418 SHIERLADE------AVARCSGGLFCGAQRKQALIHFAHRRALDIEGLGEKIVDQLVDQN 471 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 +R PAD++ L T + N+ G+ S NL +IN+ RN +L RFIF+LG Sbjct: 472 ----LVRTPADLYRL------GFTALANLERMGEKSADNLIQAINQSRNTTLARFIFALG 521 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG A+ LA +Y Q ++ ++ + ++ L+ V VG ++A +I F Q Sbjct: 522 IRHVGETTAKDLANHY-------QSMHALMDASVEELLT---VKDVGPVVADSITSFMQE 571 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 N +E LL + EK +S+ + K V TGT + R +A++ + + GA V+ Sbjct: 572 AHNREVIEQLLAS-GMQLSVEEKIISAAVFGKTFVLTGTFPTMTRDEAKDLLEKAGAKVA 630 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +S+KTD ++ G + GSKL KA++LGV +++EE+ L LL+ Sbjct: 631 GSVSKKTDYVVAGTDAGSKLAKAEELGVPVIDEEEMLNLLK 671 >gi|262276434|ref|ZP_06054243.1| DNA ligase [Grimontia hollisae CIP 101886] gi|262220242|gb|EEY71558.1| DNA ligase [Grimontia hollisae CIP 101886] Length = 670 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 264/707 (37%), Positives = 415/707 (58%), Gaps = 46/707 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +++L SL+ +++YH YY KP + D+EYD + + AI P+L ++ P+ + Sbjct: 6 QQKLQSLKTQLNYHGHLYYVEDKPELPDAEYDRMMQELLAIEAKHPELVTADSPS---QR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + +V H IP LSL+ ++ +L F R+ + F+ EPK+DG Sbjct: 63 VGGAPLGAFEQVRHEIPMLSLDNAFDDGELEAFEKRLRDRLNTTE--RFVFSCEPKLDGL 120 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 +++ YE G V AA RGDG GE+++ +R I +P +L P +EVRGEV++ K+ Sbjct: 121 AVSLMYENGVLVQAATRGDGTVGENITHNVRTIRNVPLLLQGEGWPVRLEVRGEVFMPKD 180 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 F ALN++ I G K +ANPRNAA+G LR+L+P TR L F+ + +G SE F Sbjct: 181 GFEALNEKNIKKGEKTFANPRNAAAGSLRQLDPKITATRPLRFYAYSVGVMSEAFGDSHV 240 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 L++++ G P++ V++ + + +YY ++ + R+ LPY+IDG+V KVD Q++L Sbjct: 241 GRLEQLKQWGIPLSPEVKKVDGLENVKAYYQDIAARRNDLPYEIDGVVIKVDNIDTQERL 300 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NATLHN Sbjct: 301 GFVARAPRWAIAYKFPAQEEITVLQDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I L +++GD V+++RAG+VIP++V ++ + R DA+ FP CP Sbjct: 361 ADEIARL-----------GVKIGDTVIIRRAGDVIPQIVSVVESRRPDDAKEVVFPHECP 409 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +CQS+V R G+ VA RCTGGL C AQ+ E +KHF SR A +I+GLG + ++ Sbjct: 410 VCQSQVER----VEGEAVA--RCTGGLICRAQRKEAIKHFSSRKALDIDGLGDKIVEQLI 463 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + E I+ PAD+F L Q T ++ G S NL D+++K + +L RFI+ Sbjct: 464 EKE----LIKTPADLFKLTAGQVTMLDRM------GPKSAQNLVDALSKAKETTLPRFIY 513 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 SLGIR VG A +LA ++ +++ + LI V VG I+A+ +V F Sbjct: 514 SLGIREVGEATAANLANHFFTFEAIREATEE----------QLIEVQDVGVIVAKHVVNF 563 Query: 616 YQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + N ++ALL P+I + ++N + K +V TGTL ++ R+ A+ + L Sbjct: 564 FNEEHNKTVIDALLACGITWPAIEQPDENKPQPLAGKTVVLTGTLSQMSRNDAKAALQAL 623 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GA V+ +S KTD++I G+ GSKL KAQQLG++I++E+ + LL + Sbjct: 624 GAKVTGSVSAKTDLLIAGEAAGSKLTKAQQLGIEIVDEDGMMRLLSR 670 >gi|217970592|ref|YP_002355826.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T] gi|217507919|gb|ACK54930.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T] Length = 693 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 273/703 (38%), Positives = 396/703 (56%), Gaps = 51/703 (7%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 HD YY P I D+EYD L R AI A+P L RS D P ++GG+ V Sbjct: 30 HDHAYYVLDAPTIPDAEYDRLFRELQAIERAYPAL-RSAD--SPTQRVGGKALAQFATVR 86 Query: 91 HSIPTLSLEKIWNIEDLRKFI--TRIYR-FWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 H +P LS+ + E F R+ R +DD ++ + E K DG I++RYE G Sbjct: 87 HRVPMLSISTETDTEASGAFAFDARVRRALGLDEDDAAVAYAAELKFDGLAISLRYEDGV 146 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV++ +R + IP L P ++EVRGE+Y+ ++DF LN Sbjct: 147 LVQAATRGDGETGEDVTSNVRTVKAIPLRLLGEAPPVLEVRGEIYLRRDDFERLNARQAE 206 Query: 208 VGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265 G K + NPRNAA+G +R+L+P R L+F+ +GLG+ + Q E+L + G Sbjct: 207 AGEKIFVNPRNAAAGSIRQLDPGIAARRPLSFYAYGLGEVAGWTLPATQTEVLDALAAFG 266 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 PV Q G+ +++ + ++R TLP+DIDG+VYKVD +LQ+QLG R PRW Sbjct: 267 LPVCGHRAQVRGAEGLAAFHARIGALRDTLPFDIDGVVYKVDALALQQQLGFVTREPRWA 326 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++HK+ ++A T L DI++Q+GRTG LTPVARLEPV +GG +TNATLHN+D I Sbjct: 327 VAHKYPAQEAVTLLRDIEVQVGRTGALTPVARLEPVFVGGVTVTNATLHNQDEID----- 381 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF----SFPSFCPICQSRV 441 +D+R+GD V+V+RAG+VIP+VV I+ R + F FP+ CP+C S V Sbjct: 382 ------RKDVRIGDWVIVRRAGDVIPEVVAPILERRGGELPRFVLLDRFPT-CPVCGSHV 434 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 VR G+ A RCTGGL C AQ+ + L HF R A +IEGLG + +D A Sbjct: 435 VR------GEDEAVARCTGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVD----A 484 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 ++ P D++ L + N+ G+ S NL +I K R +L RFIF+LGIR+ Sbjct: 485 AIVKTPVDLYRL------GVLALANLERMGEKSAQNLLMAIEKSRGTTLARFIFALGIRN 538 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG AR LA+++ +++ +IA + D +L +VP VG I+A+ I EF+ P N Sbjct: 539 VGEATARDLARHF-------GKLDALIAADVD---ALQQVPDVGPIVAKCIAEFFAEPHN 588 Query: 622 ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 +E L V + G + +V+ + K V TGTL + R +A+ + G V+ Sbjct: 589 REVIEQLRAAGVHWAEGEPQGSVAGALAGKTFVLTGTLPTLSRDEAKARIEARGGKVAGS 648 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +S+KT ++ G GSKL+KAQ LG+ I++E+ LL + +T Sbjct: 649 VSKKTHYVVAGAEAGSKLDKAQALGLAILDEDGLRVLLNETDT 691 >gi|90416525|ref|ZP_01224456.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207] gi|90331724|gb|EAS46952.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207] Length = 677 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 270/719 (37%), Positives = 410/719 (57%), Gaps = 58/719 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQ R E L+ E++ H+ YY +P I DSEYD RR I P+L + P+ Sbjct: 5 LEQVRAEYEQLKDELNQHNHRYYVLDEPTIPDSEYDRSMRRLQDIEQQHPELLSDDSPS- 63 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GG S +V+H++P LSL+ ++ E+L F RI KDD I + EPK Sbjct: 64 --QRVGGAALPSFSQVSHAVPMLSLDNAFSEEELEAFDRRISDRLNYKDDQQIDYVCEPK 121 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ Y +G V A RGDG GED++A +R I +IP R+ IPE++EVRGE+Y Sbjct: 122 LDGVAVSLLYNQGLLVRGATRGDGKVGEDITANVRTINSIPLRLNGDGIPELLEVRGEIY 181 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + + F +N IA G KP+ NPRNAA+G LR+L+ +R L + +G+ F Sbjct: 182 LPRGGFDKINAAAIAKGDKPFVNPRNAAAGSLRQLDSKITASRPLEMCAYSVGQ----FQ 237 Query: 252 KGQ-----YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ ML+ + GF +N V +YY M+ R LPYDIDG+VYKV Sbjct: 238 GGETPDSHLNMLKALGSWGFKINTYVEAVQGIAACEAYYERMQKRRDQLPYDIDGIVYKV 297 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ LQ++LG A++PRW I+ KF ++ T+L+D++ Q+GRTG LTPVARL PV +GG Sbjct: 298 NDLGLQQRLGFVAKAPRWAIARKFPAQEEMTQLVDVEFQVGRTGALTPVARLAPVFVGGV 357 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I L + +GD V+++RAG+VIPKV ++++ R +AQ Sbjct: 358 TVSNATLHNGDEIARL-----------GLCIGDTVIIRRAGDVIPKVAAVVLDRRPENAQ 406 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP CP+CQS V R G+ VA RC+GGL C AQ E +KHF SR A +I+GL Sbjct: 407 PIVFPENCPVCQSSVRR----VEGEAVA--RCSGGLFCGAQSKEAIKHFASRKAMDIDGL 460 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ D I PAD++ L S TKI ++ G+ S NL DSI R Sbjct: 461 GDKLVELLV---DRGL-IYSPADLYEL------SATKIADLERMGEKSAQNLIDSIAVSR 510 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L +F+F+LGIR VG ++LA+ + S + II D +L+ V +G Sbjct: 511 QTTLAKFLFALGIREVGEATGQTLARNFGS-------LEAIIEAEQD---ALLEVDDIGP 560 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQ 662 ++A I +F++NP N+ + AL + + + +++++ ++ + V TG ++ + Sbjct: 561 VVAYYIRDFFRNPDNLSIINALRES---GVSWDDIDITAQDSQPLKGQTWVLTGGMEIMS 617 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A++ + +LGA V+ +S KT ++ G GSKL KAQ L + + +EEQFL L+ + Sbjct: 618 RAEAKDRLQELGAKVAGSVSAKTSQVVAGPGAGSKLTKAQSLDIPVFDEEQFLAFLEGH 676 >gi|254468809|ref|ZP_05082215.1| DNA ligase, NAD-dependent [beta proteobacterium KB13] gi|207087619|gb|EDZ64902.1| DNA ligase, NAD-dependent [beta proteobacterium KB13] Length = 669 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 267/707 (37%), Positives = 417/707 (58%), Gaps = 49/707 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K++S L+ I HD CYY P I D EYD+L R I + P+L P+ P ++ Sbjct: 7 KKISYLKSVIQEHDHCYYVLDDPQISDHEYDSLLRELKNIEDSNPELIT---PDSPTQRV 63 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG ++ H+ P LSL + I +L F RI D N + F E K DG Sbjct: 64 GGSPISEFNQIQHNKPMLSLGNAFGINELEAFNKRINDTL---DVNDVEFNAELKFDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +TI YE G YAA RGDG+ GEDV+ I+ I TIP ++ N P EVRGEV + KND Sbjct: 121 VTILYENGLMKYAATRGDGNVGEDVTHNIKTIKTIPLKLYGDNHPRTFEVRGEVLMDKND 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQY 255 F LN+ I++G+K +ANPRNAA+G LR+L+P R L F+ + LG+ + + Sbjct: 181 FKELNEYQISLGQKTFANPRNAAAGSLRQLDPKITAKRKLKFYAYSLGQVDQDLELTNHT 240 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L+ + G P+++ ++ + + +Y ++ R+ LP+DIDG+VYKV+ Q+ L Sbjct: 241 DILKYIHNSGIPISSYSQRVVGINQMQHFYEDILKKRNDLPFDIDGIVYKVNSIKNQENL 300 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +++PRW I++KF ++A T + DI++Q+GRTG++TPVARL+PV + G +TNATLHN Sbjct: 301 GYVSKAPRWAIAYKFPAEEAETVVNDINVQVGRTGVITPVARLQPVFVSGVTVTNATLHN 360 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED +++R +DIR+GD V+V+RAG+V+P++V +I +R +A+ F P +CP Sbjct: 361 ED---------EMLR--KDIRIGDSVIVRRAGDVVPEIVRVIKEKRPSNAKVFEMPQYCP 409 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 IC S+V+R G+ AA RCTG L C AQ + + H+VSR A NIEGLG + +D FF Sbjct: 410 ICNSQVIR----IDGE--AAQRCTGQLKCEAQAKQAISHYVSRKAMNIEGLGAKIIDHFF 463 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I+ +DI+ L + I+ + GFG+ S NL ++I + +L +FI+ Sbjct: 464 EKG----LIKNISDIYHLDYEE------IQKMEGFGERSAENLKEAIESSKKTTLAKFIY 513 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR+VG ++ + K + ++N++ + DD+L + VG ++AQ++ +F Sbjct: 514 ALGIRNVGEATSKDIVKKLGT-------LDNVMKASIDDFL---EINDVGPVVAQSLHQF 563 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQL 673 +Q N + ++ E +NVS++ + + V TGTL+ R + +E + Sbjct: 564 FQEDENKAIINNIV-EFGVKWEDQAQNVSNDQKLNQQTFVVTGTLENFSRDEIKELIENN 622 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +S+KT +I+GDNPGSK +KA +LGVK++NE+Q + LL + Sbjct: 623 GGKVSGSVSKKTSYVIIGDNPGSKADKAAELGVKVINEKQLMELLNE 669 >gi|307261779|ref|ZP_07543445.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868597|gb|EFN00408.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 676 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 268/709 (37%), Positives = 421/709 (59%), Gaps = 58/709 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L +L Q++ ++ Y+ P++ D+EYD L + P+ ++ P ++G Sbjct: 11 QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 67 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH IP LSL+ ++ E+L F+ R+ + +D +++ F EPK+DG + Sbjct: 68 AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 126 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED+++ IR I IP L++ N P +EVRGEV++ + F Sbjct: 127 SILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 186 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254 LN+ + G K +ANPRNAA+G LR+L+P ITR LN + G+ ++ + Sbjct: 187 ETLNERALEKGEKTFANPRNAAAGSLRQLDP-KITRQRPLVLNAYGIGVYESDDELPVTH 245 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 246 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 305 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 306 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 365 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 366 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 414 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 415 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 468 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L + T+ ++E + G+ S N +SI K +N +L RF+ Sbjct: 469 MERE----LVHTPADLFKL---EHTTLMRLERM---GEKSAQNALNSIEKAKNTTLARFL 518 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ +N+ A + L V VG+++A IV Sbjct: 519 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 568 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668 F+Q P N+ VE L+ S G H +NV + ++ K +V TGTL ++ R +A+ Sbjct: 569 FWQEPHNVAVVEDLI-----SQGVHWQNVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 623 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L Sbjct: 624 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIAL 672 >gi|190570889|ref|YP_001975247.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019404|ref|ZP_03335210.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|254782310|sp|B3CPS1|DNLJ_WOLPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190357161|emb|CAQ54574.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994826|gb|EEB55468.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 651 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 285/695 (41%), Positives = 413/695 (59%), Gaps = 62/695 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L+ +I+YH+ YYQ SKP I D+EYD LK++ AI P+ ++D +G + Sbjct: 11 LQNQINYHNILYYQKSKPEISDAEYDELKKKLAAIE---PEAYATQDS------VGAPPD 61 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 KV H P LSLE ++ + + KF+++I RF + I EPKIDG + Y Sbjct: 62 ERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIA---DEIEILCEPKIDGLSFSAIY 118 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 E GKFV AA RGDG GEDV+ + I P+ L ++ +EVRGE+YIS +DFL LN+ Sbjct: 119 EDGKFVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-DVQGRLEVRGEIYISNSDFLKLNE 177 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 +ANPRNAA+G L++LN +IT R L +F + L E K Q E+L+K+ Sbjct: 178 ------NNEFANPRNAAAGSLKQLN-ANITAKRPLRYFAYSLIGGIE---KSQSEVLEKL 227 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 LGF VN ++ +G++ +YNE+ R L YDIDG+VYKV++ LQ +LG ++ Sbjct: 228 EKLGFCVNEHRSLTSSLNGMLKFYNEIYDCRYNLDYDIDGIVYKVNDLVLQSRLGSTHKA 287 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PR +++KF+ A T+L I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK Sbjct: 288 PRSALAYKFSAIYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIK- 346 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR GD V +KRAG+VIP++V + RH + F FP CP C S+V Sbjct: 347 ----------RKDIREGDVVTIKRAGDVIPQIVKVDEGSRHTNMPEFVFPDICPECGSKV 396 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + A RC C AQ +E+LKHFVS+DAF+I GLG++Q+ FF+ E Sbjct: 397 QIE--------GVAVRCPEEFNCKAQIVEKLKHFVSKDAFDIVGLGEKQIKFFYDLE--- 445 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 IR DIF L+ R + + K + G+G+ S+ NL +I RR ISL+RFIFSLGIR Sbjct: 446 -LIRQIPDIFILEERLKEFSLKEHH--GWGEKSIANLLSAIQSRRVISLDRFIFSLGIRF 502 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G +A LA YY+SY N+ ++ +ND + L+ + +G+ +A+++ F+ RN Sbjct: 503 IGQVVAELLANYYVSYDNWYNSMS-----SND--VELVGIDGIGEKVAESLKSFFSQERN 555 Query: 622 ICAVEALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 I + L ++ P + S + NK +VFTG L+ + R +A+ LGA +S+ Sbjct: 556 IKMLNDLTAYLQILPV---SSNSSDSFLNNKIIVFTGKLRAMSRGEAKVRAKVLGAKISS 612 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LS KTD +I G++PGSK +KA +LGV+I++EEQ+ Sbjct: 613 SLSTKTDYLIAGEDPGSKYKKAMELGVEILDEEQW 647 >gi|307257368|ref|ZP_07539138.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864218|gb|EFM96131.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 682 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 269/709 (37%), Positives = 421/709 (59%), Gaps = 58/709 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L +L Q++ ++ Y+ P++ D+EYD L + P+ ++ P ++G Sbjct: 17 QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH IP LSL+ ++ E+L F+ R+ + +D +++ F EPK+DG + Sbjct: 74 AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 132 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED+++ IR I IP L++ N P +EVRGEV++ + F Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254 ALN+ + G K +ANPRNAA+G LR+L+P ITR LN + G+ ++ + Sbjct: 193 EALNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPVTH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L + T+ ++E + G S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKL---EHTTLMRLERM---GGKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ +N+ A + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668 F+Q P N+ VE L+ S G H +NV + ++ K +V TGTL ++ R +A+ Sbjct: 575 FWQEPHNVAVVEDLI-----SQGVHWQNVIQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 629 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLVKAQELGVKVLTEQEFIAL 678 >gi|307250556|ref|ZP_07532498.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857372|gb|EFM89486.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 682 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 267/709 (37%), Positives = 421/709 (59%), Gaps = 58/709 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L +L Q++ ++ Y+ P++ D+EYD L + P+ ++ P ++G Sbjct: 17 QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH IP LSL+ ++ E+L F+ R+ + +D +++ F EPK+DG + Sbjct: 74 AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 132 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED+++ IR + IP L++ N P +EVRGEV++ + F Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254 LN+ + G K +ANPRNAA+G LR+L+P ITR LN + G+ ++ + Sbjct: 193 ETLNERALEKGEKTFANPRNAAAGSLRQLDP-KITRQRPLVLNAYGIGVYESDDELPVTH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L + T+ ++E + G+ S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKL---EHTTLMRLERM---GEKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ +N+ A + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668 F+Q P N+ VE L+ S G H +NV + ++ K +V TGTL ++ R +A+ Sbjct: 575 FWQEPHNVAVVEDLI-----SQGVHWQNVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 629 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIAL 678 >gi|303250616|ref|ZP_07336813.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252937|ref|ZP_07534825.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650604|gb|EFL80763.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859575|gb|EFM91600.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 682 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 268/709 (37%), Positives = 422/709 (59%), Gaps = 58/709 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L +L Q++ ++ Y+ P++ D+EYD L + P+ ++ P ++G Sbjct: 17 QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH IP LSL+ ++ E+L F+ R+ + +D +++ F EPK+DG + Sbjct: 74 AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 132 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED+++ IR I IP L++ N P +EVRGEV++ + F Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254 ALN+ + G K +ANPRNAA+G LR+L+P ITR LN + G+ ++ + Sbjct: 193 EALNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPATH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L + T+ ++E + G+ S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKL---EHTTLMRLERM---GEKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ +N+ A + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668 F+Q P N+ VE L+ S G H ++V + ++ K +V TGTL ++ R +A+ Sbjct: 575 FWQEPHNVTVVEDLI-----SQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 629 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIAL 678 >gi|307248328|ref|ZP_07530352.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306855149|gb|EFM87328.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 682 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 268/709 (37%), Positives = 421/709 (59%), Gaps = 58/709 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L +L Q++ ++ Y+ P++ D+EYD L + P+ ++ P ++G Sbjct: 17 QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH IP LSL+ ++ E+L F+ R+ + +D +++ F EPK+DG + Sbjct: 74 AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 132 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED+++ IR I IP L++ N P +EVRGEV++ + F Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254 ALN+ + G K +ANPRNAA+G LR+L+P ITR LN + G+ ++ + Sbjct: 193 EALNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPATH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L T+ ++E + G+ S N +SI K +N +L RF+ Sbjct: 475 MECE----LVHTPADLFKL---DHTTLMRLERM---GEKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ +N+ A + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668 F+Q P N+ VE L+ S G H ++V + ++ K +V TGTL ++ R +A+ Sbjct: 575 FWQEPHNVAVVEDLI-----SQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 629 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIAL 678 >gi|114319842|ref|YP_741525.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1] gi|122312282|sp|Q0AAV2|DNLJ_ALHEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114226236|gb|ABI56035.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1] Length = 673 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 269/715 (37%), Positives = 406/715 (56%), Gaps = 59/715 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QAR E +L +EI HD YY P+I D+EYDAL A+ P+L P+ P Sbjct: 9 QARIE--ALRREIREHDHRYYVLDAPVIADAEYDALMAELQALEAEHPELI---TPDSPS 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ G +VTH+ P LSL+ + DL +F R+ Q + + + EPK+D Sbjct: 64 QRVAGRPAEGFGEVTHAEPMLSLDNAFEEADLAEFDRRVR---QALGLDPVVYVAEPKLD 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G ++IRYE G+ V A RGDG GE ++ +R I ++P R+ P ++EVRGEV I Sbjct: 121 GLSVSIRYEDGRLVRAGTRGDGRVGEAITENVRTIRSVPLRLRGEGWPPVMEVRGEVVIR 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 + DF LN++ +A G +P+ANPRNAA+G LR+L+P R L FF G+ + A Sbjct: 181 RADFERLNEQRLADGERPFANPRNAAAGSLRQLDPRITARRRLTFFTFGVAAAGRL-AAS 239 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E+L K+ GF VN V + G YY + + R L ++IDG+VYKVD+ ++ Sbjct: 240 HHEVLDKLAGWGFRVNERVERVRGLDGCREYYQRLLADRDELSFEIDGVVYKVDDLDARE 299 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I+ K ++A+T + I +GRTG +TPVA LEPV +GG ++ ATL Sbjct: 300 ELGFTARAPRWAIAWKLPAQEATTVVRRILPSVGRTGAITPVAELEPVGVGGVTVSRATL 359 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D ++ +D+R GD V+V+RAG+VIP++ ++ +R A+P++ P+ Sbjct: 360 HNLDEVR-----------RKDVRKGDTVMVRRAGDVIPEITAVVTEKRPEGAEPWAMPAE 408 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S V+R L+ + A HRC GGL C AQ+ L HF SR A +I+GLG++ + Sbjct: 409 CPVCGSEVLR-LDDE-----AVHRCMGGLYCPAQREGALLHFASRKALDIDGLGEKVVSQ 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + +R PAD+FTL+ Q ++ GD S NL +++K R +L RF Sbjct: 463 LVER----GMVRSPADLFTLEHCQLAGLERM------GDKSADNLVAALDKARRTTLPRF 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGI+HVG AR LA+++ S + A N D +L P VG ++AQAI Sbjct: 513 LYALGIQHVGEVTARRLAEHFGSLE----------AIMNADESALAETPDVGPVVAQAIA 562 Query: 614 EFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ P N V+AL +EV P+ R E+ ++ + V TGTL + R +A+ Sbjct: 563 HFFAEPHNREVVQALRAAGVTWEEVDPA-ERGEQPLA----GRTFVLTGTLSGMTRDEAK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + LGA VS +S+KTD ++ G+ GSKL KA+ LGV++++E+ LLQ++ Sbjct: 618 AALEALGARVSGSVSKKTDYLVAGEKAGSKLAKAESLGVEVLDEQALQALLQEHG 672 >gi|103486042|ref|YP_615603.1| DNA ligase, NAD-dependent [Sphingopyxis alaskensis RB2256] gi|123078573|sp|Q1GVQ2|DNLJ_SPHAL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|98976119|gb|ABF52270.1| DNA ligase, NAD-dependent [Sphingopyxis alaskensis RB2256] Length = 714 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 281/730 (38%), Positives = 415/730 (56%), Gaps = 57/730 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +L+ +A EL L ++I++H+ Y+ P I D++YDAL RR AI AFP L R+ Sbjct: 4 VGSLTEAEAANELMRLAKQIAHHNKLYHAEDSPEISDADYDALVRRNTAIEEAFPHLIRA 63 Query: 69 EDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + PN +G + S L KVTH+ +SL+ + ED+ +F R+ RF + + Sbjct: 64 DSPN---RLVGAAVEASPLAKVTHAQRMMSLDNAFAAEDVEEFAARVRRFLNLDEGEPLA 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 FT E KIDG ++RYEKG V AA RGDG GEDV+ +R I IP+ L +IP+I E+ Sbjct: 121 FTAEDKIDGLSCSLRYEKGVLVQAATRGDGTVGEDVTPNVRTIADIPQNLKGDIPDIFEI 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKP-----YANPRNAASGILRRLNPT-DITRYLNFFVH 241 RGEVY++K DF ALN ++A P +ANPRNAA+G LR+ + + +R L F H Sbjct: 181 RGEVYMAKADFAALNARLLAEADDPDKARQFANPRNAAAGSLRQKDASVTASRPLRFLAH 240 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G G+ S + A QY +++ + G PV+ +++ + ++ +Y +++ R+ LPYDIDG Sbjct: 241 GWGEVSALPADTQYAVMKAIESWGVPVSPLLKRCDGVADLLDHYRMIEAERAELPYDIDG 300 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD Q +LG AR+PRW I+HKF ++A T L IDIQ+GRTG LTPV RL PV Sbjct: 301 VVYKVDRLDWQARLGFVARAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLTPV 360 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG +++N TLHN D I L +R GDR++V+RAG+VIP+VV+ + R Sbjct: 361 TVGGVVVSNVTLHNRDEIARL-----------GVRPGDRIIVQRAGDVIPQVVENLT--R 407 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 +P+ FP CP+C S V + G++ RCTGGL C+AQ+ ERL+HFVSR A Sbjct: 408 DEPREPYVFPDHCPVCGSEAV----AEDGEVDV--RCTGGLICNAQKFERLRHFVSRGAL 461 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG++ + F + + + PADIF L+ ++ + G+ + SV NL + Sbjct: 462 DIEGLGEKSIAEFLEL---GWLEKGPADIFRLKSHREELLAR----EGWKERSVDNLLAA 514 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF---AQEINNIIAHNND----- 593 I +R R +F LGIRHVGA AR L K A E+ + N Sbjct: 515 IEAKRQPDAARLLFGLGIRHVGAVTARDLLKGIGDIARLPGKAAELRAWVEANPRIEGES 574 Query: 594 ------------DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 + +R +G +A+A+ +F+ P N + LL EVSP E Sbjct: 575 EGKYAARRLEAIKAILDVRADGIGPAVAEALGDFFHEPHNRVLWDDLLSEVSPPPYVVET 634 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 SE+ K +VFTG L+ + R +A+ LGA + +S KTD+++ G GSKL++A Sbjct: 635 R-DSEVSGKTVVFTGKLETMSRDEAKAQAEALGAKAAGSVSAKTDLVVAGPGAGSKLKQA 693 Query: 702 QQLGVKIMNE 711 LG+++++E Sbjct: 694 ASLGIRVIDE 703 >gi|326403263|ref|YP_004283344.1| DNA ligase [Acidiphilium multivorum AIU301] gi|325050124|dbj|BAJ80462.1| DNA ligase [Acidiphilium multivorum AIU301] Length = 682 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 265/677 (39%), Positives = 394/677 (58%), Gaps = 44/677 (6%) Query: 41 PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100 PI+ D+ YDAL+R ++ A PDLA + L+++G + + KV H IP LSL+ Sbjct: 38 PIMDDAAYDALRREAASLRAAHPDLAAA------LDQVGTTPSGAFGKVRHRIPMLSLDN 91 Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160 ++ D +F I RF + F EPKIDG I++ YE +FV A RGDG G Sbjct: 92 VFEPADFVEFCASIRRFL-GLGTAPLAFVAEPKIDGLSISLTYENRRFVRGATRGDGTEG 150 Query: 161 EDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220 EDV+ +R + +P L + P+ IE+RGEVY++K DF+ALN + +ANPRNAA Sbjct: 151 EDVTENLRTLRELPATLPDDAPDFIEIRGEVYMTKTDFIALNQGQA----RQFANPRNAA 206 Query: 221 SGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFH 279 +G LR+L+P +R L+ F + G +SE + ++ L +R GFPVN + + Sbjct: 207 AGSLRQLDPAVTASRRLSLFAYARGASSEAVGETHWDYLATLRRWGFPVNPLAERVSE-A 265 Query: 280 GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL 339 + + R+ L YDIDG+VYK+D+ +LQ++LG R+PRW ++ KF ++A T L Sbjct: 266 AAEPFQRSIGERRAGLDYDIDGVVYKIDDLALQERLGFAGRAPRWAVAWKFPAERALTTL 325 Query: 340 LDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGD 399 IDIQ+GRTG LTP ARL+PVN+GG L+++ATLHNED I +D+R+GD Sbjct: 326 RGIDIQVGRTGALTPRARLDPVNVGGVLVSHATLHNEDEI-----------ARKDVRIGD 374 Query: 400 RVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459 V ++RAG+VIP+++ + R D+ PF FP CP C + +R G++V RCT Sbjct: 375 TVELQRAGDVIPQILRALPERRPADSVPFVFPDHCPACGALAIR----PAGEVV--RRCT 428 Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519 GGL+C AQ +ERL HF SR AF+IEG+G++ + F + PADIFTL+ R+ Sbjct: 429 GGLSCPAQVVERLIHFCSRLAFDIEGMGEKTVQEFHG----LGWLESPADIFTLRDRE-- 482 Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579 I + G+G+VS L +I+ RR ISL RFI++LGIR +G + A+ LA++Y SY Sbjct: 483 --AAIAALEGWGEVSARKLIAAIDARRRISLARFIYALGIRRIGEQNAKLLARHYSSYAV 540 Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP--SIG 637 + +++ +D L L + +G IA+ + F+ P N LL + P +I Sbjct: 541 WRRQMEEAGVIGSDARLELGSISGIGPSIAEELAGFFAEPHN----RDLLDRLVPILTIE 596 Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697 + K +VFTGTL+ + R +A+ LGA V+ +S+KTD ++VG + GSK Sbjct: 597 DEVAAAGGALAGKTIVFTGTLESLTRPEAKARAEALGARVTESVSKKTDFVVVGADAGSK 656 Query: 698 LEKAQQLGVKIMNEEQF 714 KA LGV +++E +F Sbjct: 657 AAKATSLGVTVLSEAEF 673 >gi|89900985|ref|YP_523456.1| DNA ligase [Rhodoferax ferrireducens T118] gi|123397178|sp|Q21WC8|DNLJ_RHOFD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89345722|gb|ABD69925.1| DNA ligase, NAD-dependent [Rhodoferax ferrireducens T118] Length = 690 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 264/712 (37%), Positives = 398/712 (55%), Gaps = 50/712 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L + + H YY P I D+EYD + + AI P+L P+ P ++GG Sbjct: 19 VAQLRRALHEHAHHYYVEDAPTIPDAEYDRMFQELQAIEAQHPELI---TPDSPTQRVGG 75 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGT 137 V H++P LS+ + E R F TR+ R + ++ + EPK DG Sbjct: 76 RALEQFASVRHAVPMLSIRTETDTEASGARNFDTRVRRELGLDEAAPAVAYVAEPKFDGL 135 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + +RYE G V AA RGDG GEDV+ +R I IP L + P I+EVRGEVY+ ++D Sbjct: 136 AMNLRYESGILVQAATRGDGEVGEDVTQNVRTIGQIPLRLPADAPSILEVRGEVYMRRDD 195 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG--- 253 F LN++ A G+K + NPRNAA+G +R+L+P R L+FF +GLG+ + A G Sbjct: 196 FEKLNEQQRARGQKTFVNPRNAAAGAVRQLDPAIAAQRPLSFFAYGLGEVTPEQAGGPAF 255 Query: 254 --QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 YE+LQ ++ GFPV+ V A +V+YY + R LP+DIDG+VYKV+ +L Sbjct: 256 GTHYELLQALKTWGFPVSALVGLAQGATELVAYYESIARQRDALPFDIDGVVYKVNSLAL 315 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+++G R PRW ++HKF ++ T +LDID+Q+GRTG LTPVA+L PV +GG +TNA Sbjct: 316 QRRMGFVTREPRWAVAHKFPAQEQFTTVLDIDVQVGRTGKLTPVAKLAPVFVGGVTVTNA 375 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED + +D+RVGD V+V+RAG+VIP+VV +++++R P A F+ P Sbjct: 376 TLHNEDEAR-----------RKDVRVGDTVIVRRAGDVIPEVVSVLLDKRQPGATEFTMP 424 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S VR+ G++ +RCTGGL CSAQ+ + + HF R A +EGLG++ + Sbjct: 425 RQCPVCGSAAVRE----EGEV--DYRCTGGLFCSAQRKQAILHFAQRRAVEVEGLGEKLV 478 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D IRI D++ L T + ++ D S N+ ++ K + +L Sbjct: 479 DQLVDGH----VIRILPDLYRL------GLTALASLDRMADKSAQNILQALEKSKQTTLP 528 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+F LGIRHVG A+ LA+++ ++ A + L++V +G I+AQ+ Sbjct: 529 RFLFGLGIRHVGEATAKELARHF----------GSLDAVMDASLEQLLQVNDIGPIVAQS 578 Query: 612 IVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + F+ P N VE L V+ G + + K V TGTL + R +A++ + Sbjct: 579 LRTFFDQPHNREVVEQLRACGVTWQEGPPAPVTPTPLSGKTFVITGTLPSMSRDEAKDLI 638 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 G V+ +S+KT ++ G GSKL KAQ+LGV +++E LL ++ Sbjct: 639 EAAGGKVAGSVSKKTTFVVAGTEAGSKLTKAQELGVAVLDEAGLKELLDGHS 690 >gi|307246220|ref|ZP_07528301.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255203|ref|ZP_07537019.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259638|ref|ZP_07541362.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852829|gb|EFM85053.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861831|gb|EFM93809.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866283|gb|EFM98147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 682 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 267/709 (37%), Positives = 421/709 (59%), Gaps = 58/709 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L +L Q++ ++ Y+ P++ D+EYD L + P+ ++ P ++G Sbjct: 17 QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH IP LSL+ ++ E+L F+ R+ + +D +++ F EPK+DG + Sbjct: 74 AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 132 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED+++ IR + IP L++ N P +EVRGEV++ + F Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254 ALN+ + G K +ANPRNAA+G LR+L+P ITR LN + G+ ++ + Sbjct: 193 EALNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPVTH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L + T+ ++E + G S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKL---EHTTLMRLERM---GGKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ +N+ A + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668 F+Q P N+ VE L+ S G H ++V + ++ K +V TGTL ++ R +A+ Sbjct: 575 FWQEPHNVTVVEDLI-----SQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 629 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIAL 678 >gi|261496584|ref|ZP_05992964.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307787|gb|EEY09110.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. OVINE] Length = 685 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 273/712 (38%), Positives = 416/712 (58%), Gaps = 56/712 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ ++ Q + ++ Y+ P + D+EYD L + P+L ++ P ++ Sbjct: 20 EKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPT---QRV 76 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ EDL F+ R+ + + + F EPK+DG Sbjct: 77 GAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYI-TASPSQLEFCCEPKLDGLA 135 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197 ++I YE G AA RGDG +GE+++A IR I IP L + N P +EVRGEV++ ++ Sbjct: 136 VSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSG 195 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKG 253 F LN++ +A G K +ANPRNAA+G LR+L+P ITR LN + G+ ++ + Sbjct: 196 FNELNEKALAKGEKTFANPRNAAAGSLRQLDP-KITRQRPLVLNAYGIGVYESDDELPAT 254 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E LQ ++ LG PVNN +R +++YY E+++ R TL YDIDG V KV++ +LQ+ Sbjct: 255 HFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQE 314 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG +RS RW I++KF ++ T L ++D Q+GRTG +TPVA+LEPV + G ++NATL Sbjct: 315 QLGFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATL 374 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L I +GD V+++RAG+VIP++ +++ R +A+ FP+ Sbjct: 375 HNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVVLERRPENAKKIEFPTA 423 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CPIC S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 424 CPICHSAVTR----VEGEAVA--RCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQ 477 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E I PAD+F L T+ ++E + G+ S N +SI K +N +L RF Sbjct: 478 LMARE----LIETPADLFKL---DHTTLMRLERM---GEKSAQNALNSIEKAKNTTLPRF 527 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +FSLGIR VG A +LA ++ S + Q + L V VG+++A IV Sbjct: 528 LFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANRIV 577 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-----ENKKLVFTGTLQKIQRHKAQE 668 F+Q P N+ VE L+ + R E V +EI ++K +V TGTL ++ R +A+ Sbjct: 578 SFWQEPHNVEVVEDLIAQGV----RWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKA 633 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LG VS +S KTD +I G+ GSKL KAQ+LG++I++E+QF+ L Q Sbjct: 634 LLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIELTQH 685 >gi|301155433|emb|CBW14899.1| DNA ligase, NAD(+)-dependent [Haemophilus parainfluenzae T3T1] Length = 667 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 268/707 (37%), Positives = 417/707 (58%), Gaps = 55/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ +L Q++ ++ Y+ P I D+EYD L + A+ A P+L ++ P + Sbjct: 4 QQQIDTLRQDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELITADSPT---QR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + ++ H IP LSL+ ++ E+ F+ RI + D + F EPK+DG Sbjct: 61 VGAKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLPD-PLTFCCEPKLDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 ++I Y G AA RGDG +GED++A IR I IP ++L N P +EVRGEV++ Sbjct: 120 AVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLQLLMDNPPARLEVRGEVFMPHE 179 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQ 254 F LN + + G K +ANPRNAA+G LR+L+P + R L +G+G + Sbjct: 180 GFERLNQQALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGIAEGVDLPNTH 239 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ +LQ++ Sbjct: 240 YDRLQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQEK 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +++PRW I++KF ++ TRL D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 300 LGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 359 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L DI +GD V+++RAG+VIP+++ ++ + R DA+P FP C Sbjct: 360 NGDEIERL-----------DIAIGDMVVIRRAGDVIPQIIGVLHDRRPADARPIVFPETC 408 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S +VR G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 409 PVCDSAIVR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E I PAD+F L T+ T++E + G S N S+ K +N +L RF+ Sbjct: 463 VDRE----LIHTPADLFKLDL---TALTRLERM---GTKSAENALASLEKAKNTTLARFV 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A +LA ++ + + A N D +L +VP VG+++A I+ Sbjct: 513 FALGIREVGEATALNLANHFKTLE----------ALQNADLEALQQVPDVGEVVANRILA 562 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IEN----KKLVFTGTLQKIQRHKAQE 668 F+ P N+ V L+ + G H + V ++ IEN K +V TGTL ++ R++A+ Sbjct: 563 FWHEPHNVAVVNDLIAQ-----GVHWETVEAKEVIENRFKGKTVVLTGTLTQMGRNEAKA 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + +GA VS +S KTD +I GD GSKL KAQ+LGV ++ EE+FL Sbjct: 618 LLQDMGAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEEEFL 664 >gi|190150622|ref|YP_001969147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263969|ref|ZP_07545570.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|254781246|sp|B3H275|DNLJ_ACTP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189915753|gb|ACE62005.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870658|gb|EFN02401.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 682 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 268/709 (37%), Positives = 421/709 (59%), Gaps = 58/709 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L +L Q++ ++ Y+ P++ D+EYD L + P+ ++ P ++G Sbjct: 17 QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH IP LSL+ ++ E+L F+ R+ + +D +++ F EPK+DG + Sbjct: 74 AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 132 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED+++ IR I IP L++ N P +EVRGEV++ + F Sbjct: 133 SILYVDGVLNQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254 ALN+ + G K +ANPRNAA+G LR+L+P ITR LN + G+ ++ + Sbjct: 193 EALNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPVTH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L + T+ ++E + G S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKL---EHTTLMRLERM---GGKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ +N+ A + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668 F+Q P N+ VE L+ S G H ++V + ++ K +V TGTL ++ R +A+ Sbjct: 575 FWQEPHNVTVVEDLI-----SQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 629 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIAL 678 >gi|46143448|ref|ZP_00135242.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208768|ref|YP_001053993.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae L20] gi|166215385|sp|A3N1V2|DNLJ_ACTP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126097560|gb|ABN74388.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 683 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 268/709 (37%), Positives = 419/709 (59%), Gaps = 58/709 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + P ++G Sbjct: 18 QLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITVDSPT---QRVG 74 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH IP LSL+ ++ E+L F+ R+ + +D +++ F EPK+DG + Sbjct: 75 AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 133 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED+++ IR I IP L++ N P +EVRGEV++ + F Sbjct: 134 SILYVDGVLSQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 193 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254 LN+ + G K +ANPRNAA+G LR+L+P ITR LN + G+ ++ + Sbjct: 194 EELNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPATH 252 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y +++ R TL YDIDG V KV++ LQ+Q Sbjct: 253 FERLQWLKSIGIPVNNEIRLATGREQLLAFYANIQAKRPTLGYDIDGTVLKVNDIGLQEQ 312 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 313 LGFISRSPRWAIAYKFPSQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 372 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V ++++ R +A+ FP+ C Sbjct: 373 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMDRRPENAKKIEFPTAC 421 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 422 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 475 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L T+ ++E + G+ S N +SI K +N +L RF+ Sbjct: 476 MERE----LVHTPADLFKL---DHTTLMRLERM---GEKSAQNALNSIEKAKNTTLARFL 525 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ +N+ A + L V VG+++A IV Sbjct: 526 FALGIRDVGEATAQNLANHF----------HNLAAIRTATFEQLQAVQDVGEVVANRIVR 575 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668 F+Q P N+ VE L+ S G H ++V + ++ K +V TGTL ++ R +A+ Sbjct: 576 FWQEPHNVAVVEDLI-----SQGVHWQDVIQVEIADNPLKGKNVVLTGTLTQLTRDQAKA 630 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + G VS +S KTD +I G+ GSKL KAQ+LGVKI+ E++F+ L Sbjct: 631 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILTEQEFIAL 679 >gi|171463268|ref|YP_001797381.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp. necessarius STIR1] gi|254781389|sp|B1XTU0|DNLJ_POLNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171192806|gb|ACB43767.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 671 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 272/701 (38%), Positives = 402/701 (57%), Gaps = 50/701 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L+ E++ + YY P++ D EYD L R I P+ SE + ++GG Sbjct: 16 LQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAVHPEWVTSESLS---QRVGGAAL 72 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 VTH++P LSL + +L F R + + + E K DG I++RY Sbjct: 73 KEFDSVTHAVPMLSLNNAFEDAELIAFDRRCREVLHAE---HMAYAGELKFDGLAISLRY 129 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALN 202 E G V AA RGDG SGEDV+A I+ I IP L+ NIP+++EVRGEV++ DF +N Sbjct: 130 ENGLLVTAATRGDGASGEDVTANIKTIRAIPLKLTRKNIPQVLEVRGEVFMYLKDFEKMN 189 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKGQYEML 258 + +G K +ANPRNAA+G LR+L+ + IT R L+FF +GLG + K E+L Sbjct: 190 RQAAELGEKEFANPRNAAAGSLRQLD-SKITAKRPLSFFAYGLGALEPQSWLPKTHEELL 248 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 LG PV + + ++ I+++Y+E+ R +LPYDIDG+VYKV+ F+ Q +LG Sbjct: 249 NAYIELGLPVCSERKVLHSVQEILAFYSEIDDKRDSLPYDIDGVVYKVNSFAEQAKLGFA 308 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +R+PR+ ++HK+ ++A T +L ID+Q+GRTG +TPVARL PV +GG +TNATLHNED Sbjct: 309 SRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVGGVTVTNATLHNEDE 368 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 IK +D+R+GD V V+RAG+VIP+VV +I + R DA+ F PS CP+C Sbjct: 369 IK-----------RKDVRIGDTVSVRRAGDVIPEVVSVIKDRRPADAKEFQMPSRCPVCD 417 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S + R + A RC+GGL C AQ+ + L HF R A +IEGLG++ +D Sbjct: 418 SHIERLADE------AVARCSGGLFCGAQRKQALIHFAHRRAMDIEGLGEKIVDQLVDQN 471 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 +R PAD++ L T + N+ G+ S NL +IN+ RN +L RFIF+LG Sbjct: 472 ----LVRTPADLYRL------GFTALANLERMGEKSADNLIKAINQSRNTTLARFIFALG 521 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG A+ LA +Y Q ++ ++ +D L+ V VG ++A +I F Q Sbjct: 522 IRHVGETTAKDLANHY-------QSMHALMDAGVEDLLT---VKDVGPVVADSITSFMQE 571 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 N +E LL + EK +S+ + K V TGT + R +A++ + + GA V+ Sbjct: 572 AHNREVIEQLLAS-GMRLAVEEKVISAAVAGKTFVLTGTFPTMTRDEAKDLLEKAGAKVA 630 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +S+KTD ++ G + GSKL KA++LGV +++E L LL+ Sbjct: 631 GSVSKKTDYVVAGTDAGSKLTKAEELGVPVIDEAAMLDLLK 671 >gi|261493319|ref|ZP_05989845.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310963|gb|EEY12140.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 685 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 272/712 (38%), Positives = 416/712 (58%), Gaps = 56/712 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ ++ Q + ++ Y+ P + D+EYD L + P+L ++ P ++ Sbjct: 20 EKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPT---QRV 76 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ EDL F+ R+ + + + F EPK+DG Sbjct: 77 GAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYI-TASPSQLEFCCEPKLDGLA 135 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197 ++I YE G AA RGDG +GE+++A IR I IP L + N P +EVRGEV++ ++ Sbjct: 136 VSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSG 195 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKG 253 F LN++ +A G K ++NPRNAA+G LR+L+P ITR LN + G+ ++ + Sbjct: 196 FNELNEKALAKGEKTFSNPRNAAAGSLRQLDP-KITRQRPLVLNAYGIGVYESDDELPAT 254 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E LQ ++ LG PVNN +R +++YY E+++ R TL YDIDG V KV++ +LQ+ Sbjct: 255 HFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQE 314 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG +RS RW I++KF ++ T L ++D Q+GRTG +TPVA+LEPV + G ++NATL Sbjct: 315 QLGFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATL 374 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L I +GD V+++RAG+VIP++ +++ R +A+ FP+ Sbjct: 375 HNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVVLERRPENAKKIEFPTA 423 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CPIC S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 424 CPICHSAVTR----VEGEAVA--RCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQ 477 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E I PAD+F L T+ ++E + G+ S N +SI K +N +L RF Sbjct: 478 LMARE----LIETPADLFKL---DHTTLMRLERM---GEKSAQNALNSIEKAKNTTLPRF 527 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +FSLGIR VG A +LA ++ S + Q + L V VG+++A IV Sbjct: 528 LFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANRIV 577 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-----ENKKLVFTGTLQKIQRHKAQE 668 F+Q P N+ VE L+ + R E V +EI ++K +V TGTL ++ R +A+ Sbjct: 578 SFWQEPHNVEVVEDLIAQGV----RWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKA 633 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LG VS +S KTD +I G+ GSKL KAQ+LG++I++E+QF+ L Q Sbjct: 634 LLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIELTQH 685 >gi|219850499|ref|YP_002464932.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485] gi|254781282|sp|B8GAC1|DNLJ_CHLAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219544758|gb|ACL26496.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485] Length = 681 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 269/722 (37%), Positives = 395/722 (54%), Gaps = 58/722 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + Q EL +L + YH YY PI+ D+EYDAL A+ A P+L P Sbjct: 4 IDVTQRINELRTLIRRYDYH---YYVLDDPIVSDAEYDALMNELRALEAAHPELI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G KV H P LSL + DL + R+ R + D ++ + +E Sbjct: 58 DSPTQRVSGTPASQFAKVQHPQPMLSLGNAFTTTDLLAWRDRVLRLLGQ--DTAVAYVVE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----------RVLSLN 180 PKIDG + + Y G+FV A RGDG GEDV+A +R I +IP R + Sbjct: 116 PKIDGLAVALTYHDGQFVQGATRGDGEVGEDVTANLRTISSIPLLLHPPDGGHDRDVPTA 175 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +IEVRGEVY+ DF ALND + A G K +ANPRNAA+G LR+ +P R L FF Sbjct: 176 LPSLIEVRGEVYMRTADFEALNDRLAAAGEKIFANPRNAAAGSLRQKDPAITAARPLRFF 235 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 +G+G + GQ++ L+ +R LGFPVN VR+ F +++Y + + R L Y+ Sbjct: 236 AYGVGPVEGVELTGQWQTLRYLRMLGFPVNQDVRRFTDFDEVLAYCEQWMARRDELTYEA 295 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V K+D+F+ Q++LG R PRW I+ KF ++A TRLL+I + +GRTG++TP A LE Sbjct: 296 DGMVIKIDDFAQQRELGVVGRDPRWAIAFKFPPREAITRLLNITVNVGRTGVVTPNAELE 355 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV IGG ++ NA+LHN DYI RDIR+GD V+VKRAG+VIP VV +V Sbjct: 356 PVQIGGVIVRNASLHNADYI-----------AQRDIRIGDYVIVKRAGDVIPYVVGPVVA 404 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R +P+ FP+ CP C S + R+ AA RC C AQ + RL+HF SR Sbjct: 405 RRDGSERPWQFPTHCPACGSPLEREPGE------AAWRCNNFGICPAQLVRRLEHFASRA 458 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +I GLG++Q + F + +R AD+F L+ + GFG + NL Sbjct: 459 ALDIVGLGERQAELFVQRG----LVRDVADLFYLK------AEDFAGLEGFGPKRIANLL 508 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 ++I+ R L+R I LGIR+VG+ A++L + ++ A N L Sbjct: 509 NAIDAARQRPLDRLIVGLGIRYVGSVAAQALVN----------SLGSLDAIMNARQEELE 558 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 ++P +G ++A +IV+F+ +P N +E L V + G + S + + V TGTL Sbjct: 559 QIPGIGPVVAASIVDFFAHPENRQLIEKLRAAGVQMNAGPQRERKSDVLAGQTFVLTGTL 618 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A + G V+ +S+KT+ ++ G N GSKL KAQQLG+ +++E L L+ Sbjct: 619 PSLTREQASALIIAHGGKVTDSVSKKTNYVVAGVNAGSKLAKAQQLGIPVLDEAALLALI 678 Query: 719 QQ 720 + Sbjct: 679 GE 680 >gi|58617448|ref|YP_196647.1| DNA ligase [Ehrlichia ruminantium str. Gardel] gi|75356732|sp|Q5FG20|DNLJ_EHRRG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|58417060|emb|CAI28173.1| DNA ligase [Ehrlichia ruminantium str. Gardel] Length = 674 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 268/706 (37%), Positives = 409/706 (57%), Gaps = 41/706 (5%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+A+ L L ++I YHD YY P I D+EYD L + I FP L Sbjct: 5 EEAKLILDKLNEKIRYHDLLYYTQDSPEISDAEYDDLCHQRSIILEKFPSLNSYYQ---- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 + IGG+ + KV H+ LSL+ +N +D+ KF+ R + K++ S+ F+ E KI Sbjct: 61 -DYIGGDPDSRFSKVKHNERMLSLDNAFNKQDVEKFMVRTRKLLDMKENESLCFSCELKI 119 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +I Y+ GK A+ RG+G+ GE+++ ++ I +P + N P+ +EVRGEVYI Sbjct: 120 DGLSFSIIYKNGKLFQASTRGNGYFGENITNNVKTIENLPHTIQ-NAPDFLEVRGEVYID 178 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 +NDF+ LN+E K +ANPRNAA+G +R+L+PT R L + ++ + ++ + Sbjct: 179 RNDFIQLNNE-----GKNFANPRNAAAGSIRQLDPTITAQRKLKYCMYTIVNSNCL---T 230 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q E L + GF N + F +++YN+M + RS + YDIDG++YK++ LQ Sbjct: 231 QTESLNLLNSWGFCTNEHTISTDNFEEAINFYNKMYNNRSNISYDIDGIIYKINNIKLQH 290 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG ++SPRW I++KF + T+L I IQ+GRTG+LTP+A L P+NIGG +IT A+L Sbjct: 291 ILGTTSKSPRWAIAYKFPAIEGKTKLNKISIQVGRTGVLTPIAELAPINIGGVVITRASL 350 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+ I+ +DIR GD V+VKRAG+VIP+VVD+ + R + F+FP+ Sbjct: 351 HNKSEIE-----------RKDIREGDYVIVKRAGDVIPQVVDVDKSLRTVELAEFNFPTA 399 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S V + + + C GGL C Q LE+++HFVS+DAFNI GLGK+QL F Sbjct: 400 CPACGSTVYQ------AQQEVSIYCMGGLFCHNQILEKIRHFVSKDAFNIIGLGKKQLLF 453 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I DIFTL+ + ++ + G+G+ S+ NL +IN + I+LE F Sbjct: 454 FYEYG----LITNIIDIFTLEEKINNKNIQLSSFNGWGEKSINNLLSAINNSKVINLENF 509 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IFSLGIR VG IA+ LA +++SY+N+ E+ + D I + VG ++ Sbjct: 510 IFSLGIRFVGKHIAKILANHFISYKNWYTEMLKLA----QDVNYTINIQQVGLKTINSLR 565 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+ N+ + L++ ++ I + S I K +VFTG L + R +A+ Sbjct: 566 TFFTEQHNLNMINNLVEHLTI-IDAQSNSYVSLIHGKTIVFTGELSSMSRSEAKLKSETA 624 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA VS+ LS+ TD +I+G+NPGSK +KAQ L ++I++E+ +L +Q Sbjct: 625 GAKVSSSLSKNTDFLIIGNNPGSKYKKAQSLNIQILSEDIWLQYIQ 670 >gi|165976722|ref|YP_001652315.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190359223|sp|B0BQN6|DNLJ_ACTPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|165876823|gb|ABY69871.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 682 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 266/709 (37%), Positives = 420/709 (59%), Gaps = 58/709 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L +L Q++ ++ Y+ P++ D+EYD L + P+ ++ P ++G Sbjct: 17 QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH IP LSL+ ++ E+L F+ R+ + +D +++ F EPK+DG + Sbjct: 74 AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYI-TEDPHTLAFCCEPKLDGLAV 132 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED+++ IR + IP L++ N P +EVRGEV++ + F Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254 LN+ + G K +ANPRNAA+G LR+L+P ITR LN + G+ ++ + Sbjct: 193 ETLNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPATH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L + T+ ++E + G S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKL---EHTTLMRLERM---GGKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ +N+ A + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLDAIRAATFEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668 F+Q P N+ VE L+ S G H ++V + ++ K +V TGTL ++ R +A+ Sbjct: 575 FWQEPHNVTVVEDLI-----SQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKA 629 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIAL 678 >gi|310823543|ref|YP_003955901.1| DNA ligase [Stigmatella aurantiaca DW4/3-1] gi|309396615|gb|ADO74074.1| DNA ligase [Stigmatella aurantiaca DW4/3-1] Length = 673 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 260/718 (36%), Positives = 411/718 (57%), Gaps = 60/718 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++ A L +E+++H+ YY P + D+EYD L R + FP LA P Sbjct: 1 MDLKTAETRARDLRRELAHHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPALA---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE KV H P LSL ++N E+ +F RI + D + + E Sbjct: 58 DSPTQRVGGEAAEKFAKVVHRAPMLSLANVFNDEEFTEFDERIRKVVGPAD---VTYVCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEV 187 PK+DG IT+RYE G+F+ A RGDG +GEDV+ +R + +P L + +P ++EV Sbjct: 115 PKLDGLAITLRYENGRFLQGATRGDGTTGEDVTGNLRTVRPLPLELLPEAGMAVPPVLEV 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEV+I K DF LN++ G +ANPRNAA+G LR+L+P +R L+ ++ + T Sbjct: 175 RGEVFIRKEDFKKLNEKREEEGEALFANPRNAAAGSLRQLDPKITASRPLSVSLYEIVPT 234 Query: 247 SEIFA----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + A + E LQK LG PVN+ R A G+ + Y R L +++DG+ Sbjct: 235 EGVPAFDTHTAKLEYLQK---LGLPVNHHER-AQGLEGVRAAYQAALKGRHALKFEVDGM 290 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD +++LG+ ++SPRW +++KF ++ STR+ I++Q+GRTG LTPVA L+PV Sbjct: 291 VVKVDSEDQRRRLGQVSKSPRWAVAYKFPPEEESTRVEAIEVQVGRTGALTPVAHLKPVK 350 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG ++ ATLHNED ++ +D+R GD V V+RAG+VIP++V ++ N+R Sbjct: 351 VGGVTVSRATLHNEDELR-----------RKDVRQGDTVFVRRAGDVIPEIVSVVPNQRP 399 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D++P+ FP CP+C ++ V+D + G ++ RCTG +C AQ +E+++HF SR A + Sbjct: 400 ADSKPYEFPQHCPVCGAQAVKD---EEGAII---RCTGA-SCPAQLVEKVRHFASRPAMD 452 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+G+G + S ++ AD++ L R Q S ++ G+ S NL +I Sbjct: 453 IDGVGDKLAAQLVAS----GRVKTFADLYALTREQLLSLERM------GEKSADNLLAAI 502 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + + RF+++LGIRHVG A++LA+ + D +L RV Sbjct: 503 ERSKQTTQRRFLYALGIRHVGEATAKALAEAFPEAPLL----------YTADMEALTRVK 552 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG +AQ + F+Q P+N A++ALL V+P+ + N K +V TG + + Sbjct: 553 DVGPTMAQVLHAFFQEPQNRAAIDALLAAGVTPAP--PQVNTGGPFAGKTVVLTGGMTGM 610 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+E + + G VS +SRKTD ++ G++ GSKL+KAQ+LGV++++E+ FL LLQ Sbjct: 611 SRDQAKEEIERRGGKVSGSVSRKTDFVVAGEDAGSKLKKAQELGVRVLDEQAFLKLLQ 668 >gi|254292786|ref|YP_003058809.1| DNA ligase, NAD-dependent [Hirschia baltica ATCC 49814] gi|254041317|gb|ACT58112.1| DNA ligase, NAD-dependent [Hirschia baltica ATCC 49814] Length = 792 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 257/642 (40%), Positives = 381/642 (59%), Gaps = 35/642 (5%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +L+++QAR+ L + I D YY++ P + D++YDAL++ A+ FP L + Sbjct: 15 SLTLDQARERWEELAETIRQADSAYYEHDAPHLSDADYDALRQDLLALESEFPQLVAQDS 74 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ +G + + K+TH P LSL+ ++ ED+ +F+ RI R+ + T Sbjct: 75 PS---QSVGVKPSGRFAKITHLQPMLSLDNAFSDEDVSEFLGRIRRYLGMDASVELHVTA 131 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRG 189 EPKIDG ++ YE G + A RGDG GEDV+A ++ I IP L + PE IE+RG Sbjct: 132 EPKIDGLSASLLYENGVLISGATRGDGRVGEDVTANLKTIADIPHTLEGDDWPERIEIRG 191 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247 EVY+S DF ALN+ A GRK +ANPRNAA+G LR+L+ ++T R L FF + G TS Sbjct: 192 EVYMSHADFAALNEREAAAGRKTFANPRNAAAGSLRQLD-VEVTKSRPLRFFAYAWGDTS 250 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + F+ Q ++ GF +N ++ A++ ++ YN++ + R++L YDIDG+VYKVD Sbjct: 251 KEFSVNQMGAVEAFSKWGFSINPLMKCADSASQLIEIYNQIANDRASLGYDIDGVVYKVD 310 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q +LG +R PRW I+HKF +QA+T L +I+IQ+GRTG LTPVA+LEPV +GG + Sbjct: 311 RLDWQARLGFVSRFPRWAIAHKFPAEQATTILREIEIQVGRTGSLTPVAKLEPVTVGGVV 370 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHNED I +DIRVGD+V+++RAG+VIP++V +I ER ++P Sbjct: 371 VSNATLHNEDEI-----------ARKDIRVGDKVVIQRAGDVIPQIVRVIAEERPSHSKP 419 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + FP+ CP C S VR+++ K G+ A RCTGGL C AQ ERLKHFVSR A +I+GLG Sbjct: 420 YEFPTTCPACGSHAVREMDEK-GEEDARRRCTGGLICPAQAKERLKHFVSRKALDIDGLG 478 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTSTTKIENILGFGDVSVTNLYDSINKRR 546 +Q++ FF + P IF L++R + + +E GFG S N++ +IN +R Sbjct: 479 AKQIELFFDKG----VVTAPQHIFQLEQRINELNLPPLEEWEGFGKTSSENIFAAINAKR 534 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII-AHNNDDWLSLIRVPLVG 605 I RF+ LGI+HVG + LA+ +LS+ F ++ I A +L L + +G Sbjct: 535 QIPFARFLIGLGIQHVGQTNSGLLAQNFLSFDAFQTAMHAAIDARPGPAYLKLSSIDRIG 594 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 D + I+ F + E L E P+ E N+S +I Sbjct: 595 DTTLENILNFVE--------ENGLPETPPA--SLEPNLSGQI 626 Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 107/201 (53%), Gaps = 10/201 (4%) Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 T +ENIL F V L ++ +L I +L ++ V + ++A+ Y ++ F Sbjct: 596 TTLENILNF--VEENGLPETPPASLEPNLSGQIPALQMKGVNSAACEAMARRYGNWDEFR 653 Query: 582 QEINNIIAHNN----DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 N ++ N+ + S+ + +GD+ A+A+++F+ P N + LL E+ Sbjct: 654 ---NELLKANDTKPASAFKSISNIDGMGDVSAEALIDFFMEPHNQDMLTQLLAEIEIEAA 710 Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697 + + + K +VFTG+L+ + R +A+ LGA V++ +S+KTD ++ G GSK Sbjct: 711 QAIQ-TDGAVAGKTVVFTGSLELMSRDEAKSKAQSLGAKVASSVSKKTDYVVAGPGAGSK 769 Query: 698 LEKAQQLGVKIMNEEQFLFLL 718 L+KAQ LGV ++ E+ +L ++ Sbjct: 770 LKKAQDLGVTVLTEQAWLDMI 790 >gi|238919178|ref|YP_002932692.1| NAD-dependent DNA ligase LigA [Edwardsiella ictaluri 93-146] gi|238868746|gb|ACR68457.1| DNA ligase, NAD-dependent, putative [Edwardsiella ictaluri 93-146] Length = 672 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 267/711 (37%), Positives = 405/711 (56%), Gaps = 55/711 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++L L + +H+ YY P I D+EYD L + + P L + P+ ++ Sbjct: 4 QQLEQLRDALRHHEYQYYVLDDPQITDAEYDRLMMQLKQLEAVHPALVTVDSPS---QRV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + +V H +P LSL+ +++ E + F R++ + K D + F EPK+DG Sbjct: 61 GGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHE--RLKSDEPLTFCCEPKLDGLA 118 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE+G V AA RGDG +GED+++ ++ I IP R+ IP IEVRGEV++ ++ Sbjct: 119 VSLLYEQGVLVRAATRGDGTTGEDITSNVKTIRAIPLRLQGEAIPARIEVRGEVFMPQDG 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIFAKGQY 255 F A+N+E G K +ANPRNAA+G LR+L+P R L F+ +G G+ Y Sbjct: 179 FEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGTGQLEGGALPDSHY 238 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + LQ+ + G PV+ VR +++YY ++ R TL +DIDG+V KVD+ ++Q++L Sbjct: 239 QCLQRFKSWGLPVSERVRLCCGSAEVLAYYRQIGQARPTLGFDIDGVVIKVDDIAIQERL 298 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G AR+PRW + KF ++ TRL ++ Q+GRTG +TPVARLEPV + G ++NATLHN Sbjct: 299 GFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN 358 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L D+R+GD V+V+RAG+VIP+VV ++ R DA FP+ CP Sbjct: 359 ADEIERL-----------DLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDAHEIGFPTHCP 407 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S V R G+ VA RC+GGL C+AQ+ E LKHFVSR A ++EG+G + ++ Sbjct: 408 VCGSEVER----TEGEAVA--RCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQLV 461 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 E + PAD++ L S K+ + G S T L ++++ R +L RF+F Sbjct: 462 DKE----YVATPADLYRL------SAGKLTGLERMGPKSATKLIAALDRSRETTLARFLF 511 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A +LA ++ S Q A D SL RVP VG+++A IV F Sbjct: 512 ALGIREVGEATAANLASHFGSLQ----------ALRAADLESLKRVPEVGEVVASHIVHF 561 Query: 616 YQNPRNICAVEALLK--------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 N ++ L+ E +P+ + V S K +V TG+L + R +A+ Sbjct: 562 LSEEHNRQVIDELISDEVGIRWPEGAPA--QSAPAVDSPFAGKTVVLTGSLSVLSRDEAK 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T LGA VS +S+KTD++I GD GSKL KA LG+++++E Q L +L Sbjct: 620 DRLTALGARVSGSVSKKTDLVIAGDAAGSKLAKANILGIEVIDEAQMLRML 670 >gi|57239421|ref|YP_180557.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden] gi|58579393|ref|YP_197605.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden] gi|81352823|sp|Q5HAI7|DNLJ_EHRRW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|57161500|emb|CAH58426.1| NAD-dependent DNA ligase [Ehrlichia ruminantium str. Welgevonden] gi|58418019|emb|CAI27223.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden] Length = 674 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 268/706 (37%), Positives = 409/706 (57%), Gaps = 41/706 (5%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+A+ L L ++I YHD YY P I D+EYD L + I FP L Sbjct: 5 EEAKLILDKLNEKIRYHDLLYYTQDSPEISDAEYDDLCHQRSIILEKFPSLNSYYQ---- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 + IGG+ + KV H+ LSL+ +N +D+ KF+ R + K++ S+ F+ E KI Sbjct: 61 -DYIGGDPDSRFSKVKHNERMLSLDNAFNKQDVEKFMVRTRKLLDMKENESLCFSCELKI 119 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +I Y+ GK A+ RG+G+ GE+++ ++ I +P + N P+ +EVRGEVYI Sbjct: 120 DGLSFSIIYKNGKLFQASTRGNGYFGENITNNVKTIENLPHTIQ-NAPDFLEVRGEVYID 178 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 +NDF+ LN+E K +ANPRNAA+G +R+L+PT R L + ++ + ++ + Sbjct: 179 RNDFIQLNNE-----GKNFANPRNAAAGSIRQLDPTITAQRKLKYCMYTIVNSNCL---T 230 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q E L + GF N + F +++YN+M + RS + YDIDG++YK++ LQ Sbjct: 231 QTESLNLLNSWGFCTNEHTISTDNFEEAINFYNKMYNNRSNISYDIDGIIYKINNIKLQH 290 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG ++SPRW I++KF + T+L I IQ+GRTG+LTP+A L P+NIGG +IT A+L Sbjct: 291 ILGTTSKSPRWAIAYKFPAIEGKTKLNKISIQVGRTGVLTPIAELAPINIGGVVITRASL 350 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+ I+ +DIR GD V+VKRAG+VIP+VVD+ + R + F+FP+ Sbjct: 351 HNKSEIE-----------RKDIREGDYVIVKRAGDVIPQVVDVDKSLRTVELAEFNFPTA 399 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S V + + + C GGL C Q LE+++HFVS+DAFNI GLGK+QL F Sbjct: 400 CPACGSTVYQ------AQQEVSIYCMGGLFCHNQILEKIRHFVSKDAFNIIGLGKKQLLF 453 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I DIFTL+ + ++ + G+G+ S+ NL +IN + I+LE F Sbjct: 454 FYEYG----LITNIIDIFTLEEKINNKNIQLSSFNGWGEKSINNLLSAINNSKVINLENF 509 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IFSLGIR VG IA+ LA +++SY+N+ E+ + N I + VG ++ Sbjct: 510 IFSLGIRFVGKHIAKILANHFISYKNWYTEMLKLAQDVN----YTINIQQVGLKTINSLR 565 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+ N+ + L++ ++ I + S I K +VFTG L + R +A+ Sbjct: 566 TFFIEQHNLNMINNLVEHLTI-IDAQSNSYVSLIHGKTIVFTGELSSMSRSEAKLKSETA 624 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA VS+ LS+ TD +I+G+NPGSK +KAQ L ++I++E+ +L +Q Sbjct: 625 GAKVSSSLSKNTDFLIIGNNPGSKYKKAQSLNIQILSEDIWLQYIQ 670 >gi|189425977|ref|YP_001953154.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ] gi|254781338|sp|B3E8F8|DNLJ_GEOLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189422236|gb|ACD96634.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ] Length = 683 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 262/700 (37%), Positives = 394/700 (56%), Gaps = 46/700 (6%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + L + + +H+ CYY+ P I D+EYDAL R I A PDL P+ P ++GG+ Sbjct: 21 AELRRLLEHHNRCYYELDSPEISDAEYDALFRELQVIEAARPDLL---TPDSPTLRVGGK 77 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 +V H +P LSLE +++R F RI D ++ + EPK+DG + + Sbjct: 78 PLARFSQVRHRMPMLSLENAMQEDEIRGFEQRIRSLLALPDTVALQYQCEPKMDGLAVEL 137 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLA 200 Y+ G V A+ RGDG GE+V+A IR + +P R+ N+P ++EVRGEVY+ F Sbjct: 138 VYQDGLLVQASTRGDGEVGEEVTANIRTVRNVPLRLTGDNLPALLEVRGEVYLPLAAFQQ 197 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQ 259 LN + G P+ANPRNAA+G +R+L+P + R L +G+G E A+ Q E++ Sbjct: 198 LNQQREEAGEPPFANPRNAAAGSIRQLDPAVVARRPLAMVCYGVG-VMETEARTQTELMS 256 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 ++ G PV++ RQ + G ++ + +++ R +L Y+IDG+V KVD+ LQ++LGE++ Sbjct: 257 QLAAWGLPVSDQARQVSGIEGAIACFQDLQERRDSLLYEIDGMVIKVDDLRLQQELGEKS 316 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 RSPRW I+ KF +QA+TR+ +I + +GRTG++TPVA LEPV + G ++ ATLHN D I Sbjct: 317 RSPRWAIACKFPPRQATTRINEIILSVGRTGVITPVASLEPVELSGVTVSRATLHNWDEI 376 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 + +DIRVGDRV+V+RAG+VIP VV +++++R Q P CP+C S Sbjct: 377 R-----------RKDIRVGDRVIVERAGDVIPAVVKVLLDKRSGTEQELPEPETCPVCGS 425 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 R R+ G++ A RC GGLAC Q E + HF SRDA +I+GLG + ++ Sbjct: 426 RAARE----AGEV--AVRCQGGLACPPQLAESIIHFASRDAMDIDGLGSKYIEQL----- 474 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 S+ + DI L R + + E + GD NL +I + L RFIF+LGI Sbjct: 475 --ISLGLVKDIADLYRLTRDDFMQFERM---GDKLAENLLAAIASSKQQELSRFIFALGI 529 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 RHVG AR+LA+ + S N + D VG +A +I F+ P Sbjct: 530 RHVGERTARTLAERFGSIDNLQTATLEELTSIRD----------VGPAVAISIRSFFDAP 579 Query: 620 RNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 N ++ L V+P++ EK V + VFTGTL + R +A++ V G V+ Sbjct: 580 ANQTVLQRLKAAGVAPTV--EEKRVGGRLAGLTFVFTGTLATLGRDEAKKLVEAEGGNVT 637 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S+KTD ++ G GSKLEKA+ LG+ +++E+ F LL Sbjct: 638 GSVSKKTDYVVAGSEAGSKLEKARNLGITVLSEDAFSKLL 677 >gi|254360665|ref|ZP_04976814.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213] gi|153091205|gb|EDN73210.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213] Length = 685 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 272/712 (38%), Positives = 415/712 (58%), Gaps = 56/712 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ ++ Q + ++ Y+ P + D+EYD L + P+L ++ P ++ Sbjct: 20 EKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPT---QRV 76 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ EDL F+ R+ + + + F EPK+DG Sbjct: 77 GAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYI-TASPSQLEFCCEPKLDGLA 135 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKND 197 ++I YE G AA RGDG +GE+++A IR I IP L + N P +EVRGEV++ ++ Sbjct: 136 VSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSG 195 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKG 253 F LN++ +A G K +ANPRNAA+G LR+L+P ITR LN + G+ ++ + Sbjct: 196 FNELNEKALAKGEKTFANPRNAAAGSLRQLDP-KITRQRPLVLNAYGIGVYESDDELPAT 254 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E LQ ++ LG PVNN +R +++YY E+++ R TL YDIDG V KV++ +LQ+ Sbjct: 255 HFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQE 314 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG +RS RW I++KF ++ T L ++ Q+GRTG +TPVA+LEPV + G ++NATL Sbjct: 315 QLGFISRSSRWAIAYKFPAQEEMTILKEVGFQVGRTGAITPVAKLEPVFVAGVTVSNATL 374 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L I +GD V+++RAG+VIP++ +++ R +A+ FP+ Sbjct: 375 HNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVMLERRPENAKKIEFPTA 423 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CPIC S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 424 CPICHSAVTR----VEGEAVA--RCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQ 477 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E I PAD+F L T+ ++E + G+ S N +SI K +N +L RF Sbjct: 478 LMARE----LIETPADLFKL---DHTTLMRLERM---GEKSAQNALNSIEKAKNTTLPRF 527 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +FSLGIR VG A +LA ++ S + Q + L V VG+++A IV Sbjct: 528 LFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANRIV 577 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-----ENKKLVFTGTLQKIQRHKAQE 668 F+Q P N+ VE L+ + R E V +EI ++K +V TGTL ++ R +A+ Sbjct: 578 SFWQEPHNVEVVEDLIAQGV----RWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKA 633 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LG VS +S KTD +I G+ GSKL KAQ+LG++I++E+QF+ L Q Sbjct: 634 LLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIELTQH 685 >gi|158521726|ref|YP_001529596.1| DNA ligase, NAD-dependent [Desulfococcus oleovorans Hxd3] gi|254781314|sp|A9A0L9|DNLJ_DESOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158510552|gb|ABW67519.1| DNA ligase, NAD-dependent [Desulfococcus oleovorans Hxd3] Length = 682 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 273/721 (37%), Positives = 405/721 (56%), Gaps = 60/721 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L +A++ ++ L E+ H+ YY P I D+EYD L R + PDLA DP Sbjct: 5 LDKSEAKERVTFLRNELHRHNHLYYIKDAPEISDAEYDRLFRELAELEALHPDLA---DP 61 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G L VT +IP LS+ + E+L KF R+ R Q D + + E Sbjct: 62 ASPTARVGAPPTGDLATVTRTIPMLSISNAFADEELFKFDERVRRSLQTGD--PVTYLAE 119 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVR 188 PK+DGT + + YEKG+ V AA RGDG +GE ++ R I ++P L+ + +P ++EVR Sbjct: 120 PKLDGTAVELVYEKGRLVMAATRGDGVTGEVITPNARTIGSVPLHLTGDAVPMPNLLEVR 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEV ++K F LN + +AN RNAA+G LR+L+ +R L +G+G+ S Sbjct: 180 GEVVMTKEGFEKLNALRLERDEPLFANARNAAAGSLRQLDSRVTASRPLTLIAYGIGRFS 239 Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 EI A Q+E++ ++ GF N+ VR G++ +Y ++ IR +LPYDIDG+V KV Sbjct: 240 EIDAISTQHEIVTRLADFGFKTNSHVRWDLDIKGVIDFYRFLEGIRPSLPYDIDGMVVKV 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D Q+ LG +RSPRW+I++KFA Q +TRL+ ID+Q+GRTG LTPVA LEPV IGG Sbjct: 300 DRLDFQRTLGATSRSPRWVIAYKFAASQETTRLVAIDVQVGRTGALTPVALLEPVTIGGV 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATLHNED I +DIRVGD VLV+RAG+VIP+VV +I R + Sbjct: 360 TVSRATLHNEDEI-----------ARKDIRVGDAVLVQRAGDVIPEVVQVITGRRTGNET 408 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 PF P+ CP+C + VVR+ + A RC AC AQ ER+KHF ++ AF+I+GL Sbjct: 409 PFQMPATCPVCGTPVVREPSE------AVTRCVNA-ACPAQVKERIKHFAAKGAFDIDGL 461 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D I AD+FTL+ +E++ G S NL +I K R Sbjct: 462 GDKLVDQLVDRG----MIASYADLFTLR------VEDLESLDRMGFKSAQNLVAAIEKSR 511 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYY-----LSYQNFAQEINNIIAHNNDDWLSLIRV 601 +I+ + F++ LG+RHVGA +A LA+ + L+ A ++N+I Sbjct: 512 HITFDAFLYGLGMRHVGAHVATLLARAFPGIDQLAEAALAGQLNSIDG------------ 559 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSE--IENKKLVFTGTL 658 +G +IA+++ F+ NP N V++L+ V+ E E + K V TGTL Sbjct: 560 --IGGVIAESVKNFFSNPENRQTVDSLINHGVALQFPEKEAATGHEMPLAGKTFVLTGTL 617 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +K+ R +A++ + G V+ +S +TD ++ G+ PGSK +KA+ LGV I++E L LL Sbjct: 618 EKMTRDQARQRIEAAGGKVTGSVSSRTDYVVAGEAPGSKRDKAEALGVAILDEAGLLSLL 677 Query: 719 Q 719 + Sbjct: 678 E 678 >gi|85059656|ref|YP_455358.1| NAD-dependent DNA ligase LigA [Sodalis glossinidius str. 'morsitans'] gi|123766419|sp|Q2NSC2|DNLJ_SODGM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|84780176|dbj|BAE74953.1| DNA ligase [Sodalis glossinidius str. 'morsitans'] Length = 678 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 262/719 (36%), Positives = 423/719 (58%), Gaps = 57/719 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQ + + L +++ + + YY + P + DSEYD + PDL ++ P+ Sbjct: 1 MEQIEQHILRLRKQLRHWEYLYYVEAAPEVPDSEYDRFMAELRTLEAERPDLLTADSPS- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GG+ S +V H +P LSL+ ++ F R+ ++ DD + + E K Sbjct: 60 --QRVGGQAQSSFGQVRHEVPMLSLDNVFEEPGFLAFDKRVRDRLKRDDD--MTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEV 191 +DG +++ YE G+ V AA RGDG +GED++A +R I TIP L N+P ++E+RGEV Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGATGEDITANVRTIRTIPLRLQDHDNLPRLLEIRGEV 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE-I 249 ++S+ FL LN+ G K +ANPRNAA+G LR+L+P+ R L F+ +G+G + Sbjct: 176 FMSEAGFLRLNETAKREGSKVFANPRNAAAGSLRQLDPSITARRPLTFYCYGVGLLEDGE 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + +E LQ+ + G PV++ VR+ ++ +Y ++ R +L +DIDG+V KVD Sbjct: 236 LPESHWERLQQFKAWGVPVSDRVRRCTGSAAVLDFYRQVHEARLSLGFDIDGVVIKVDSL 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG AR+PRW I++KF ++ TR+ D++ Q+GRTG +TPVARLEPV + GA+++ Sbjct: 296 ALQQRLGFVARAPRWAIAYKFPAQEQLTRVRDVEFQVGRTGAITPVARLEPVLVSGAMVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D ++ L + +GD V+V+RAG+VIP++V ++ +ER + +P + Sbjct: 356 NATLHNADEVERL-----------GLMIGDTVIVRRAGDVIPQIVGVVTSERPAEVRPVA 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ A RCT GL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 405 FPTQCPVCSSDVER----VEGE--AVLRCTAGLVCAAQRKEALKHFVSRRAMDIDGMGDK 458 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E ++ PAD+F L + T ++ G S NL +++ K R + Sbjct: 459 IIDQLVERE----LVKTPADLFRLNKEILTRLDRM------GSKSAQNLLEALEKARQTT 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA Y + ++ +IA + D SL V +G+I+A Sbjct: 509 FARFLYALGIREVGEATAVNLAAAYGT-------LDALIAADID---SLTGVQDIGNIVA 558 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEI-------ENKKLVFTGTLQKI 661 + F++ NI ++ LL SP+IG R + V++ + K +V TG+L + Sbjct: 559 THVRHFFEETHNIEVIQDLL---SPAIGIRWPEPVAAPVAASDNPFAGKTIVLTGSLSSL 615 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R +A++++ LGA VS +S KTD++I G+ GSKL KAQQL + +M+E + + LL + Sbjct: 616 SRDEAKDHLVALGARVSGSVSAKTDLLIAGEAAGSKLSKAQQLNIPVMDEAEMMRLLGE 674 >gi|156933031|ref|YP_001436947.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ATCC BAA-894] gi|166215403|sp|A7MKW4|DNLJ_ENTS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|156531285|gb|ABU76111.1| hypothetical protein ESA_00834 [Cronobacter sakazakii ATCC BAA-894] Length = 672 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 261/716 (36%), Positives = 417/716 (58%), Gaps = 53/716 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R A+ A P+L P+ Sbjct: 1 MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +V H +P LSL+ +++ F R+ + K +++ + E K Sbjct: 58 PTQRVGAAPLTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVQD--RLKSTDALVYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GED++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLRGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + E LQ+ + G PV++ +R T ++++Y+++++ R TL +DIDG+V KVD Sbjct: 236 -PRSHMERLQQFKAWGLPVSDRIRLVKTPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++ Sbjct: 295 ELQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I L +R+GD+V+++RAG+VIP+VV+++++ER + +P Sbjct: 355 NATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ V RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPAQCPVCGSDVER----VEGEAVT--RCTGGLICGAQRKEALKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S NL +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNLVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA ++ + + IN I DD L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAHFGTLEAL---INASI----DD---LQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 + F++ N + L +EV +P + + E+ + S K +V TGTL ++ R Sbjct: 558 THVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEE-IDSPFAGKTVVLTGTLSQMSRD 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL + Sbjct: 617 DAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 672 >gi|82523924|emb|CAI78646.1| NAD-dependent DNA ligase [uncultured delta proteobacterium] Length = 670 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 271/709 (38%), Positives = 406/709 (57%), Gaps = 54/709 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A K + L Q I YH+ YYQ P I D+EYD L R + FPD E + P Sbjct: 7 AHKRIIELRQIIEYHNKRYYQQDAPEISDAEYDLLMRELHNLEAQFPD---DELASSPTQ 63 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G TH P LSL ++ E++ F R+ R ++I + EPK+DG Sbjct: 64 RVGAAPLAKFVSFTHPSPMLSLANAFSEEEIIDFDNRLKRLASV---DNISYVAEPKLDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVY 192 + I YE G F+ A RGDG +GEDV+ ++ I T+P + + IP +EVRGEVY Sbjct: 121 LAVNIIYENGFFIKGATRGDGTTGEDVTQNLKTINTLPLKIKKSGETLIPSFMEVRGEVY 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K F LN + G +P+ANPRNAA+G LR+L+ + IT R L+ F++G+G + Sbjct: 181 MEKEPFEKLNQRRVKDGEEPFANPRNAAAGSLRQLD-SKITARRPLSIFLYGIGNIQGMN 239 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +E+LQ + GFPVN + QA + + Y+N + + R TLPYDIDG+V KVD + Sbjct: 240 FPTHWELLQALSVWGFPVNKLIEQAKDINACIRYFNRIGNARDTLPYDIDGVVLKVDGLA 299 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ LG +R+PRW ++ KF +Q +T + DI IQ+GR G LTPVA +EPVN+GG +++ Sbjct: 300 LQNTLGNISRNPRWALACKFPAQQETTIIKDIIIQVGRMGTLTPVAIMEPVNVGGVMVSR 359 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED I +D+R+GD V+++RAG+VIP+VV +I R + F Sbjct: 360 ATLHNEDEI-----------SKKDVRIGDAVIIQRAGDVIPEVVKVIDKNRTDRGKKFKM 408 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP C S VVR G++ A RC ++C AQ E ++HF SR A +IEGLG++ Sbjct: 409 PSHCPECGSEVVR----FEGEV--AQRCV-NISCPAQLKEHIRHFASRGALDIEGLGEKL 461 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 F ++ I PAD++ L + K+ + + S L DSI + +N L Sbjct: 462 SAQLFDAK----LIADPADLYFLTK------DKLLELDRQAEKSAQKLIDSIARSKNPPL 511 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++FI++LGIRHVG A+ LA Y+ S I N+IA ++D L + +G I+ Sbjct: 512 DKFIYALGIRHVGERTAKLLAGYFGS-------IENLIAAKSED---LTVINEIGPEISA 561 Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +IVEF+ P+N ++ K V P + E + ++ + K VFTGT++++ R+KA++ Sbjct: 562 SIVEFFHEPKNKAVMKKFEKAGVIPQ--KKEISHNAPLAGKAFVFTGTMERMGRNKAKDI 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V +G V + +++KT ++ G PGSKL+KA G+KI++E++FL L+ Sbjct: 620 VENMGGTVQSGVTKKTTYVVAGAEPGSKLDKANSSGIKIISEDEFLKLI 668 >gi|237807406|ref|YP_002891846.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187] gi|237499667|gb|ACQ92260.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187] Length = 686 Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust. Identities = 261/717 (36%), Positives = 411/717 (57%), Gaps = 53/717 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + + +L+Q + ++ YY + +P + D+EYD L + A P D N Sbjct: 1 MNEIQSRMHALQQLLERYNTEYYLHDEPSVPDAEYDRLMNELRELEAANPQWL---DVNS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG S V H P LSL+ ++N EDL F R+ D +I F EPK Sbjct: 58 PTQRVGGVALTSFGSVQHEQPMLSLDNVFNAEDLAAFGRRVQERLLSND--AITFCCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE+G+ V AA RGDG +GED++ +R I IP R+ NIP IEVRGEV+ Sbjct: 116 LDGLAVSILYEQGELVRAATRGDGVTGEDITRNVRTIRVIPLRLSGDNIPARIEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-- 249 + K F N++ + G K +ANPRNAA+G LR+L+P R L F+ + +G E Sbjct: 176 MPKAGFERWNEQALVRGDKVFANPRNAAAGSLRQLDPAITAQRPLAFYAYAIGVVDEATE 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Y +Q ++ G PV + +RQ G Y++++ + R LP++IDG+V+KVD Sbjct: 236 LPDSHYARMQYLKQFGLPVCDEIRQVVGVEGCQIYHDDILAKRDALPFEIDGVVFKVDTI 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+ LG +R+PRW ++HKF ++ TRL D++ Q+GRTG +TPVARLEPV +GG ++ Sbjct: 296 AQQQMLGFVSRAPRWAVAHKFPAQEELTRLNDVEFQVGRTGAITPVARLEPVQVGGVTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I L +++GD V+V+RAG+VIP++V+++++ R + Sbjct: 356 NATLHNADEITRL-----------GVKIGDWVVVRRAGDVIPQIVNVVLDRRDASCRDID 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP+C S+V R G+ VA RC+GGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 405 FPERCPVCDSQVER----LPGEAVA--RCSGGLYCAAQRKEALKHFVSRRAMDIDGIGDK 458 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E + PAD+F L + Q ++ G+ S L +++ R + Sbjct: 459 LIEQLVDHE----LVHTPADLFALTKAQLLGLERM------GEKSADKLLNALQSARETT 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+F+LGIR +G A++LA+++ +++ A + +L++V VG+++A Sbjct: 509 FARFLFALGIREIGETTAQTLAQHF----------SDLPALQDASVETLLKVSDVGEVMA 558 Query: 610 QAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSS------EIENKKLVFTGTLQKIQ 662 + I F++ N+ ++ LL +S G + V+ + K LV TGTL ++ Sbjct: 559 KHIYYFFRQEHNLEVIQRLLAPISEGGAGISWQPVARVAVDALPLNGKTLVLTGTLSQLN 618 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A++ + LGA V+ +S KTD++I G+ GSKLEKAQQLGV + E++ + LLQ Sbjct: 619 RDAAKQALQALGAKVAGSVSAKTDLVIAGEAAGSKLEKAQQLGVPVWGEDELVALLQ 675 >gi|152979719|ref|YP_001345348.1| NAD-dependent DNA ligase LigA [Actinobacillus succinogenes 130Z] gi|190359224|sp|A6VR16|DNLJ_ACTSZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150841442|gb|ABR75413.1| DNA ligase, NAD-dependent [Actinobacillus succinogenes 130Z] Length = 672 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 265/710 (37%), Positives = 413/710 (58%), Gaps = 47/710 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +++ L + +H+ Y+ P I DSEYD L R A+ P+L ++ P + Sbjct: 5 QNQINQLRNTLRHHEYQYHVLDNPEIPDSEYDRLFHRLKALEQQHPELISADSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + ++TH +P LSL+ +++ E+ F+ RI DN + F EPK+DG Sbjct: 62 VGAKPLAGFAQITHELPMLSLDNVFSDEEFYAFVKRIQERLITLPDN-LEFCCEPKLDGL 120 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 ++I YE G+ V AA RGDG +GED++ IR I IP ++L+ N P +EVRGEV++ + Sbjct: 121 AVSILYENGRLVQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPVRLEVRGEVFMPQE 180 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTSEIFAKG 253 F LN+ +A G K +ANPRNAA+G LR+L+P ++ N + G+ + +++ Sbjct: 181 GFDRLNEAALARGEKTFANPRNAAAGSLRQLDPKITSQRPLVWNAYSIGIAEGADL-PPT 239 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 YE LQ ++ +G PVN +R ++ +Y ++ R L YDIDG V KV+E +LQ+ Sbjct: 240 HYERLQWLKSIGIPVNGEIRLCRGAENVLKFYRTIQEKRPELGYDIDGTVLKVNEIALQE 299 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+L+PV + G ++NATL Sbjct: 300 RLGFISKAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNATL 359 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I L DI +GD V+V+RAG+VIP+++ ++ + R P+A+P FP+ Sbjct: 360 HNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVVHDRRPPNAEPIIFPTL 408 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S +VR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 409 CPVCHSAIVR----IEGEAVA--RCTGGLFCDAQRKESLKHFVSRRAMDIDGVGAKLIEQ 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E IR PAD+F L + ++E + G+ S DS+ K + +L RF Sbjct: 463 LVDRE----LIRTPADLFKLDL---ITLMRLERM---GEKSAQKALDSLEKAKKTTLARF 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG A +LA ++ N+ A D L V VG+++A I Sbjct: 513 IFALGIREVGEATALNLANFF----------KNLTALQTADLEQLQAVSDVGEVVANRIY 562 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ NI V L+ + EK V+ + + K +V TGTL ++ R++A+ + Q Sbjct: 563 VFWREQHNIDVVNDLIAQGVHWDDVEEKQVNENPFKEKTVVLTGTLSQMGRNEAKALLQQ 622 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +GA V+ +S KT I+I GD+ GSKL KAQ LGV +M+E +FL ++ ++ Sbjct: 623 MGAKVAGSVSAKTHIVIAGDSAGSKLSKAQDLGVAVMSEAEFLEIVNSFS 672 >gi|88810628|ref|ZP_01125885.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231] gi|88792258|gb|EAR23368.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231] Length = 672 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 253/715 (35%), Positives = 409/715 (57%), Gaps = 48/715 (6%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 ++ +E ++E + +++L +I H+ Y+ P + D++YD L R A+ PDL Sbjct: 1 MVRVERAAVE---RRVAALRDQIEQHNYRYFVLDDPQVSDADYDVLMRELQALEADHPDL 57 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 P+ P ++G + + + H +P LSL+ ++ +L +F RI ++ N Sbjct: 58 V---SPDSPTQRVGAKPVEAFGEARHGVPMLSLDNAFDAGELGEFDRRIR---ERLGINR 111 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184 I + EPK+DG + +RYE+G+ V RGDG GED++A IR + TIP R+ PE+ Sbjct: 112 IAYMAEPKLDGLSVNLRYEQGRLVQGGTRGDGQVGEDITANIRTLRTIPLRLRGKGWPEL 171 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 IEVRGE+ I K DF LN + G + +ANPRNAA+G LR+L+P R L FF G+ Sbjct: 172 IEVRGEIVIRKADFKHLNTLRLEAGERLFANPRNAAAGSLRQLDPRVTARRPLTFFAFGI 231 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G++ E+ A Q ++L+++ GFPV V+ + ++YY + + R TLP++IDG V Sbjct: 232 GESREVIAGRQSQILERLHGWGFPVYERVQVVSGVEECLAYYRRLMAQRETLPFEIDGTV 291 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD+ S Q++LG AR+PRW +++K ++ + +LDI+ +GRTG++TPVARLEPV + Sbjct: 292 YKVDDLSSQQRLGFTARAPRWAVAYKLPAREGLSVVLDIEPSVGRTGVITPVARLEPVPL 351 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++ +ATLHNED ++ +D+R+GD V+++RAG+VIP+++ + +R Sbjct: 352 GGVIVRHATLHNEDEVR-----------RKDVRIGDTVMLRRAGDVIPEIIGVQPEKRPQ 400 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 AQP+ P CP+C + V+R + AAHRC GGL C+AQ+ + HF SR A +I Sbjct: 401 GAQPWRMPLKCPVCSAEVMRLEHQ------AAHRCLGGLYCAAQRTGAILHFASRRAMDI 454 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG++ ++ + AD+++L+R Q ++ G+ S NL +I+ Sbjct: 455 DGLGEKLVEQLVGR----GLVATVADLYSLERAQLVELERM------GERSAGNLLRAID 504 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R +L RF+++LGI VG A+ LA++Y + +L R+P Sbjct: 505 ASRATTLARFLYALGIPEVGEVTAKRLAEHYGDLDPLERATEE----------ALTRLPD 554 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G ++AQ I F+ P N ++AL + N S+ + + V TGTL+ R Sbjct: 555 IGPVLAQRITHFFAQPHNREVIDALRRSGLHWSVPDGANQSTPLAGRVFVLTGTLKGYTR 614 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +AQE + LG V+ +S+ TD +IVG+ PGSK +KA QLG+ +++E F L+ Sbjct: 615 EEAQERIEALGGRVTGHVSKNTDYMIVGEAPGSKRDKAVQLGITLLDESGFRQLI 669 >gi|170718864|ref|YP_001784038.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 2336] gi|254781341|sp|B0USD9|DNLJ_HAES2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|168826993|gb|ACA32364.1| DNA ligase, NAD-dependent [Haemophilus somnus 2336] Length = 667 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 270/712 (37%), Positives = 415/712 (58%), Gaps = 59/712 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L Q + +H+ Y+ P I DSEYD L + A+ +P+ A N P + Sbjct: 3 KQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYASE---NSPTQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKIDG 136 +G + + +V H IP LSL+ ++ ED F+ RI R +S+ F EPK+DG Sbjct: 60 VGAKPLSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRLIHVH--HSLTFCCEPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 ++I Y G+ V AA RGDG +GED++A IR I IP ++L+ N P +EVRGEV++S+ Sbjct: 118 LAVSILYINGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPTRLEVRGEVFMSQ 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAK 252 F LN +A G K +ANPRNAA+G LR+L+P IT R L +G+G + Sbjct: 178 AGFEKLNKTALAKGEKTFANPRNAAAGSLRQLDP-KITGQRPLMLNAYGIGIAEGVELPD 236 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + LQ ++ +G PVNN ++ + ++ +Y +K RS+L YDIDG V K+++ LQ Sbjct: 237 THFARLQWLKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQ 296 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG +++PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV + G ++NAT Sbjct: 297 QQLGFISKAPRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNAT 356 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I L DI +GD V+V+RAG+VIP+++ ++ R +A+ FP+ Sbjct: 357 LHNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPT 405 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S + + G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 406 NCPVCDSVISK----IEGEAVA--RCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIE 459 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + E + PAD+F L Q + ++E + G S N S+ K + +L R Sbjct: 460 QLVERE----LVHTPADLFKL---DQVTLMRLERM---GAKSAENALASLAKAKKTTLAR 509 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A +LA ++ + + F N + L +V VG+++A+ I Sbjct: 510 FIFALGIREVGETTALNLATHFKTLEAF----------ENATFEQLQKVQDVGEVVAKRI 559 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS------SEIENKKLVFTGTLQKIQRHKA 666 F+ P N+ V+ L+ + G H NV + ++ K +V TGTL K+ R +A Sbjct: 560 RSFWSEPHNVAVVKDLIAQ-----GIHWDNVEVKEVRDNPLKGKTVVLTGTLTKMGRSEA 614 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +EY+ QLG VS +S KTD +I G++ GSKL KA +LG+ I++E +FL LL Sbjct: 615 KEYLLQLGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSENEFLALL 666 >gi|223041748|ref|ZP_03611941.1| DNA ligase [Actinobacillus minor 202] gi|223017432|gb|EEF15850.1| DNA ligase [Actinobacillus minor 202] Length = 680 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 268/707 (37%), Positives = 414/707 (58%), Gaps = 48/707 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ +L ++ ++ Y+ P++ D+EYD L + P+L P+ P ++G Sbjct: 15 EIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELIT---PDSPTQRVG 71 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH +P LSL+ ++ EDL F+ R+ + +S+ F EPK+DG + Sbjct: 72 AKPLDGFSQVTHELPMLSLDNAFSDEDLDGFLRRMESYISVAP-SSLAFCCEPKLDGLAV 130 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYISKNDF 198 +I Y G AA RGDG +GED++A IR I IP L + P + +EVRGEV++ + F Sbjct: 131 SILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTDNPPLRLEVRGEVFMPQKGF 190 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTSEIFAKGQY 255 ALN + + G K +ANPRNAA+G LR+L+P + LN + G+ + + + Sbjct: 191 EALNQKALEKGEKTFANPRNAAAGSLRQLDPKITAQRPLMLNAYSIGIYDSDDELPSTHF 250 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ ++ LG PVNN +R ++ +Y ++++ R TL YDIDG V KV++ +LQ+QL Sbjct: 251 ERLQWLKSLGIPVNNEIRLEKGRENLLKFYADIQTKRPTLGYDIDGTVLKVNDIALQEQL 310 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLHN Sbjct: 311 GFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 370 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L I +GD V+++RAG+VIP+++ I+ R +A+ +FP+ CP Sbjct: 371 GDEIERL-----------GIAIGDTVIIRRAGDVIPQIIGIVAERRPKNAKKITFPTACP 419 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 IC S VVR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 420 ICGSAVVR----VEGEAVA--RCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQLM 473 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + E + PAD+F L Q + ++E + G+ S N +SI K +N +L RF+F Sbjct: 474 ERE----LVHTPADLFKL---DQVTLMRLERM---GEKSAQNALNSIEKAKNTTLPRFLF 523 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A +LA ++ S A + L V VG+++A IV F Sbjct: 524 ALGIRDVGEATALNLANHFGSLD----------AIRAATFEQLQEVQDVGEVVANRIVRF 573 Query: 616 YQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +Q P N+ VE L+++ V +I + E + +++K +V TGTL + R +A+ + L Sbjct: 574 WQEPHNVEVVEDLIQQGVVWQNIEQVEI-ADNPLKDKNVVLTGTLSVLTRDQAKALLQGL 632 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +S KTD +I G+ GSKL KAQ+LGVK+++E+ FL ++ Q Sbjct: 633 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLSEQDFLAIVGQ 679 >gi|240948595|ref|ZP_04752968.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305] gi|240297103|gb|EER47674.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305] Length = 679 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 268/702 (38%), Positives = 413/702 (58%), Gaps = 48/702 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ +L ++ ++ Y+ P++ D+EYD L + P+L P+ P ++G Sbjct: 15 EIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELIT---PDSPTQRVG 71 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH +P LSL+ ++ EDL F+ R+ + +S+ F EPK+DG + Sbjct: 72 AKPLDGFSQVTHELPMLSLDNAFSDEDLDGFLRRMESYISVTP-SSLDFCCEPKLDGLAV 130 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED++A IR I IP R+ + N P +EVRGEV++ + F Sbjct: 131 SILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLRLKTDNPPLRLEVRGEVFMPQKGF 190 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTSEIFAKGQY 255 ALN + + G K +ANPRNAA+G LR+L+P + LN + G+ + + + Sbjct: 191 EALNQKALEKGEKTFANPRNAAAGSLRQLDPKITAQRPLMLNAYSIGIYDSDDELPNTHF 250 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ ++ LG PVNN +R ++ +Y ++++ R TL YDIDG V KV++ +LQ+QL Sbjct: 251 ERLQWLKSLGIPVNNEIRLEKGRENLLKFYADIQTKRPTLGYDIDGTVLKVNDIALQEQL 310 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLHN Sbjct: 311 GFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 370 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L I +GD V+++RAG+VIP+++ I+ R +A+ +FP+ CP Sbjct: 371 GDEIERL-----------GIAIGDTVIIRRAGDVIPQIIGIVAERRPENAKKITFPTACP 419 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 IC S VVR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 420 ICGSAVVR----VEGEAVA--RCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQLM 473 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + E + PAD+F L Q + ++E + G+ S N +SI K +N +L RF+F Sbjct: 474 ERE----LVHTPADLFKL---DQVTLMRLERM---GEKSAQNALNSIEKAKNTTLPRFLF 523 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A +LA ++ S + A + L V VG+++A IV F Sbjct: 524 ALGIRDVGEATALNLANHFGSLE----------AIRTATFEQLQEVQDVGEVVANRIVRF 573 Query: 616 YQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +Q P N+ VE L+++ V +I + E + +++K +V TGTL + R +A+ + L Sbjct: 574 WQEPHNVEVVEDLIQQGVVWQNIEQVEI-ADNPLKDKNVVLTGTLSVLTRDQAKALLQGL 632 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G VS +S KTD +I G+ GSKL KAQ+LGVK+++E+ FL Sbjct: 633 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLSEQDFL 674 >gi|289522353|ref|ZP_06439207.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504189|gb|EFD25353.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 674 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 263/706 (37%), Positives = 398/706 (56%), Gaps = 46/706 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A+K L +EI H+ YY P+I D EYDAL R + FP++ P+ P Sbjct: 7 EAKKRAEELRKEIEKHNYYYYVLDSPVITDEEYDALYRGLVELERRFPEII---TPDSPT 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG+ KV H IP LS++ ++ E+L+ F++R+YR +++ D FT E K+D Sbjct: 64 QRVGGKPKEEFRKVVHEIPMLSMDNVFTQEELQSFVSRVYRILEREVD----FTTELKVD 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++ YE G+FV A RGDG GEDV+ +R I ++P L +P +EVRGEVY++K Sbjct: 120 GIAVSLVYEDGRFVLGATRGDGRVGEDVTENLRTIKSLPLRLMEPLPGRLEVRGEVYMTK 179 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 DF +LN G +ANPRNAA+G LR+L+P R L FV+ + E Q Sbjct: 180 EDFASLNRSREEDGEPLFANPRNAAAGSLRQLDPNVTAQRRLRIFVYQVVHPEEYGLFSQ 239 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +++L +R GFP R F + +Y E K R +L Y DG+V KVD+ + +Q Sbjct: 240 FQVLSWLRNKGFPTQGNERLCKNFEELWNYIEEWKEKRHSLAYATDGVVVKVDDLTAYEQ 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A++PRW I+ K+ ++ TRLL I++ +GRTG LTPVA LEPV + G ++ A+LH Sbjct: 300 LGTTAKAPRWQIAFKYPAEEQRTRLLRIEVSVGRTGALTPVAILEPVRLAGTVVQRASLH 359 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED IK L D+RVGD V V++AGE+IP+VV + + R +PF+ P C Sbjct: 360 NEDEIKRL-----------DVRVGDYVYVRKAGEIIPEVVRVDYSARTGQERPFAIPENC 408 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C + VVR + A+RC +C AQ E +KHF SRDA +I+GLG++ ++ Sbjct: 409 PVCGATVVRLVGE------VAYRCPNK-SCPAQIKESIKHFASRDAMDIKGLGEKIIEQL 461 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + I AD++ L++ S ++ G S L ++IN +N L R I Sbjct: 462 VDKK----MIGGFADLYKLKKEDLISLDRM------GPKSAEKLINAINSSKNRPLSRLI 511 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR+VG+ A LA+ + S N A+ D L +P +G IA +IV Sbjct: 512 YALGIRYVGSRTAEILAERFKSMDNLAKA----------DIQDLSDIPGIGPQIASSIVA 561 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+++ +N+ ++ L + + E K+VFTG L+K R++A+ V LG Sbjct: 562 FFRDEKNLATIKDLARCGIKMAEEESERQEGPWEGWKIVFTGELEKATRNEAENIVKYLG 621 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ S+ +SR +++G NPGSKL KAQ+LGVKI++E+ F L+ + Sbjct: 622 AIPSSSVSRNVAFVVIGRNPGSKLAKAQELGVKIVDEQTFWKLVDE 667 >gi|113460523|ref|YP_718587.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 129PT] gi|122945214|sp|Q0I2H6|DNLJ_HAES1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|112822566|gb|ABI24655.1| DNA ligase (NAD+) [Haemophilus somnus 129PT] Length = 673 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 270/712 (37%), Positives = 415/712 (58%), Gaps = 59/712 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L Q + +H+ Y+ P I DSEYD L + A+ +P+ A N P + Sbjct: 9 KQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYASE---NSPTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKIDG 136 +G + + +V H IP LSL+ ++ ED F+ RI R +S+ F EPK+DG Sbjct: 66 VGAKPLSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRLIHVH--HSLTFCCEPKLDG 123 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 ++I Y G+ V AA RGDG +GED++A IR I IP ++L+ N P +EVRGEV++S+ Sbjct: 124 LAVSILYINGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVFMSQ 183 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAK 252 F LN +A G K +ANPRNAA+G LR+L+P IT R L +G+G + Sbjct: 184 AGFEKLNKTALAKGEKTFANPRNAAAGSLRQLDP-KITGQRPLMLNAYGIGIAEGVELPD 242 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + LQ ++ +G PVNN ++ + ++ +Y +K RS+L YDIDG V K+++ LQ Sbjct: 243 THFARLQWLKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQ 302 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG +++PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV + G ++NAT Sbjct: 303 QQLGFISKAPRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNAT 362 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I L DI +GD V+V+RAG+VIP+++ ++ R +A+ FPS Sbjct: 363 LHNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPS 411 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S + + G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 412 NCPVCDSVISK----IEGEAVA--RCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIE 465 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + E + PAD+F L Q + ++E + G S N S+ K + +L R Sbjct: 466 QLVERE----LVHTPADLFKL---DQVTLMRLERM---GAKSAENALASLAKAKKTTLAR 515 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR VG A +LA ++ + + F N + L +V VG+++A+ I Sbjct: 516 FIFALGIREVGETTALNLATHFKTLEAF----------ENATFEQLQKVQDVGEVVAKRI 565 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS------SEIENKKLVFTGTLQKIQRHKA 666 F+ P N+ V+ L+ + G H +V + ++ K +V TGTL K+ R +A Sbjct: 566 RSFWSEPHNVAVVKDLIAQ-----GIHWDDVEVKEVRDNPLKGKTVVLTGTLTKMGRSEA 620 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +EY+ QLG VS +S KTD +I G++ GSKL KA +LG+ I++E +FL LL Sbjct: 621 KEYLLQLGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSENEFLALL 672 >gi|167855687|ref|ZP_02478444.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755] gi|167853205|gb|EDS24462.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755] Length = 675 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 269/718 (37%), Positives = 422/718 (58%), Gaps = 64/718 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PIE +E R++L +E YH Y+ P++ D+EYD L + P+L Sbjct: 4 PIET-QLEHLREKL----REYEYH---YHVLDNPLVPDAEYDRLMNELKNLEWQHPELIT 55 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 S+ P ++G + ++TH IP LSL+ ++ +DL F+ RI + N I Sbjct: 56 SDSPT---QRVGAKPLDGFAQITHEIPMLSLDNAFSDDDLIGFLRRIEDRI-AINSNQIE 111 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186 F EPK+DG ++I Y G AA RGDG +GED++A IR I IP ++ + N P +E Sbjct: 112 FCCEPKLDGLAVSILYVDGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLE 171 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGL 243 VRGEV++ + F LN++ +A G K +ANPRNAA+G LR+L+P ++ LN + G+ Sbjct: 172 VRGEVFMPQQGFEQLNEKALAKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGV 231 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 ++ + ++ LQ ++ LG PVN + A + ++Y ++++ RS+L YDIDG V Sbjct: 232 YESDDELPTTHFDRLQWLKTLGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTV 291 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+E +LQ+QLG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + Sbjct: 292 LKVNEITLQEQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFV 351 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++NATLHN D I+ L I +GD V+++RAG+VIP++V ++ R Sbjct: 352 AGVTVSNATLHNGDEIERL-----------GIAIGDTVIIRRAGDVIPQIVGVVAERRPD 400 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 +A+ +FP+ CP+C S VVR G+ VA RCTGGL C AQ+ E LKHFVSR A +I Sbjct: 401 NAKKIAFPTACPVCNSAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDI 454 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G++ ++ + E I PAD+F L T+ ++E + G+ S N SI Sbjct: 455 DGVGEKLIEQLMERE----LIHTPADLFKL---DHTTLMRLERM---GEKSANNALQSIE 504 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K +N +L RF+F+LGIR VG A++LA ++ + Q D +L +V Sbjct: 505 KAKNTTLARFLFALGIRDVGESTAQNLANHFGTLDAIRQA----------DLDTLKQVQD 554 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALL------KEVSPSIGRHEKNVSSEIENKKLVFTGT 657 VG+++A + +F+Q P N+ VE L+ ++V P ++ + +++K +V TGT Sbjct: 555 VGEVVANRLFQFWQEPHNVEVVEDLIAQGVKWQDVVP-----QEIADNPLKDKTVVLTGT 609 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 L ++ R +A+ + QLG VS +S KTD +I G+ GSKL KAQ+LGVKI++E++ + Sbjct: 610 LTQLTRDQAKALLQQLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELI 667 >gi|119898292|ref|YP_933505.1| DNA ligase (NAD+) [Azoarcus sp. BH72] gi|166215393|sp|A1K713|DNLJ_AZOSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119670705|emb|CAL94618.1| DNA ligase (NAD+) [Azoarcus sp. BH72] Length = 693 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 273/708 (38%), Positives = 400/708 (56%), Gaps = 61/708 (8%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 EI+ H+ YY P I D+EYD L R I A P+L P+ P ++GG L Sbjct: 17 EIARHNHAYYVLDTPTIPDAEYDRLFRELQDIEAAHPELL---TPDSPTQRVGGAPLPEL 73 Query: 87 FKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMITIRY 143 V H++P LS+ E + +R F TR+ D D ++ + E K DG I++RY Sbjct: 74 VPVRHAVPMLSIRTETDTTAQGVRNFDTRVRNALGLGDGDPAVEYLSELKFDGLAISLRY 133 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 E G V AA RGDG +GEDV+ +R I IP L P +IEVRGE+Y+ ++DF ALN+ Sbjct: 134 EHGVLVRAATRGDGETGEDVTHNVRTIQQIPLRLHGAAPAVIEVRGEIYMRRDDFEALNN 193 Query: 204 EMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAKGQYEMLQKM 261 G K + NPRNAA+G +R+L+P R L+FF +GLG+ + Q E+L ++ Sbjct: 194 RQREAGDKVFVNPRNAAAGAVRQLDPRIAARRPLSFFAYGLGEHAGFDLPATQAELLTRL 253 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 G PV ++ G++++++ + ++R+ LPYDIDG+VYKV+ LQ++LG R Sbjct: 254 AAFGVPVCEHREVSSGPEGLIAFHDRIAALRNELPYDIDGVVYKVNRVDLQRELGFVTRE 313 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++HK+ ++ TRL ID+Q+GRTG LTPVARLEPV +GG +TNATLHN+D I Sbjct: 314 PRWAVAHKYPAQEEITRLAGIDVQVGRTGALTPVARLEPVFVGGVTVTNATLHNQDEID- 372 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF----SFPSFCPIC 437 +D+RVGD V+V+RAG+VIP+VV ++ R + F S+P+ CP+C Sbjct: 373 ----------RKDVRVGDWVIVRRAGDVIPEVVGPVLERRVGEPPRFNLLASYPT-CPVC 421 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S VVR G+ A RC+GGL C AQ+ + L HF R A +IEGLG + ++ Sbjct: 422 GSHVVR------GEDEAVARCSGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVEQLVD- 474 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A ++ PAD++ L + N+ G+ S NL +I K RN +L RFIF+L Sbjct: 475 ---ASIVKTPADLYKL------GILALANLERMGEKSAQNLLAAIEKSRNTTLARFIFAL 525 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR+VG A+ LA+++ S ++ ++A D +L +VP VG ++A+ I EF+ Sbjct: 526 GIRNVGEATAKDLARHFGS-------LDALLAA---DEGALQQVPDVGPVVAKCIAEFFA 575 Query: 618 NPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N+ VE L +E +P+ S + V TGTL + R +A+ + Sbjct: 576 EAHNVEVVEQLRAAGLRWEEGAPA-----APASGSVAGLTFVITGTLPTLSRDEAKALIE 630 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS +S+KTD ++ G GSKL KAQ LGV I++E+ LL+ Sbjct: 631 AHGGKVSGSVSKKTDYLVAGAEAGSKLAKAQDLGVDIVDEDGLRRLLE 678 >gi|237747723|ref|ZP_04578203.1| DNA ligase [Oxalobacter formigenes OXCC13] gi|229379085|gb|EEO29176.1| DNA ligase [Oxalobacter formigenes OXCC13] Length = 685 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 270/713 (37%), Positives = 405/713 (56%), Gaps = 61/713 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ + L EI ++ YY PI+ DSEYD L R+ + A P+L P+ P ++ Sbjct: 17 EQAARLRSEIERYNIAYYVLDAPIVPDSEYDRLFRQLQELEKAHPELVV---PDSPTQRV 73 Query: 79 GGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + L+ F KV H IP LSL+ + E++ F RI + D ++ + E K DG Sbjct: 74 GG-LPLAQFEKVEHKIPMLSLQNGLSEEEVAAFDKRIS---DELDGENVEYEAELKFDGL 129 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 + +RYE G V AA RGDG SGE+++ I+ + TIP R+ L PE++EVRGEV + K Sbjct: 130 AVNLRYENGLLVQAATRGDGTSGENITNNIKTVRTIPLRLSDLAPPEVLEVRGEVLMFKK 189 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKGQ 254 DF LN +K + NPRNAA+G LR+L+ TR L FF +GLG+ + Q Sbjct: 190 DFHDLNRRQRENEQKEFVNPRNAAAGSLRQLDSQITATRQLRFFAYGLGELKGSPLPRSQ 249 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L LG PV + + F G++ ++N ++ R +LPY+IDG+VYKV+ + Q++ Sbjct: 250 SALLDWFVQLGIPVCDERKVVKGFKGLMGFFNRIEEKRESLPYEIDGVVYKVNSIAEQQK 309 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PR+ I+HKF ++ T +LDID+Q+GRTG +TPVARL+PV +GG +TNATLH Sbjct: 310 LGFISRAPRFAIAHKFPAQEVLTEVLDIDVQVGRTGAITPVARLKPVFVGGVTVTNATLH 369 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED ++ +D+R+GD V+V+RAG+VIP+V+ ++ R DA+ F P+ C Sbjct: 370 NEDEVR-----------RKDVRIGDTVIVRRAGDVIPEVLAVVPERRQADAREFVMPTVC 418 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P+C S ++R + A RC+GG + C AQ+ L FVSR A IEGLG+Q +D Sbjct: 419 PVCGSPIIRPEDE------AIARCSGGWIKCPAQKKGGLLLFVSRKALGIEGLGEQLIDQ 472 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 I AD++TL + ++ + S +NL + K + + RF Sbjct: 473 LVDKN----VINDAADLYTLDLETLSQLDRM------AEKSASNLLGELEKSKKTTFARF 522 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIRHVG AR+LA Y+ + N Q L+ V +G I+A +I Sbjct: 523 LYALGIRHVGEATARALAGYFGNLANLRQASEE----------QLLEVADIGPIVAASIK 572 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRH-------EKNVSSEIENKKLVFTGTLQKIQRHKA 666 +F+ + RN+ V+ LL +G H EK +NKK V TGTL + R A Sbjct: 573 QFFSDERNLALVDKLL-----GVGLHWPEHEMKEKPEELPFQNKKFVLTGTLPSLTRDAA 627 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E + LG VS+ +SR TD ++ G PGSKL KA++LGV++++E +FL L++ Sbjct: 628 AEIIRNLGGKVSSSVSRNTDYVLAGSEPGSKLAKAEELGVRVIDENEFLQLVK 680 >gi|269138493|ref|YP_003295193.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202] gi|267984153|gb|ACY83982.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202] gi|304558517|gb|ADM41181.1| DNA ligase [Edwardsiella tarda FL6-60] Length = 675 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 265/717 (36%), Positives = 407/717 (56%), Gaps = 58/717 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +IEQ +L L + +H+ YY +P + D+EYD L + + P L ++ P+ Sbjct: 4 TIEQ---QLEQLRDALRHHEYQYYVLDEPQVTDAEYDRLMAQLKQLEAEHPALVTADSPS 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++GG + +V H +P LSL+ +++ E + F R++ + K + F EP Sbjct: 61 ---QRVGGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHE--RLKSGEPLTFCCEP 115 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG +++ YE+G V AA RGDG +GED++A ++ I IP R+ + IP IEVRGEV Sbjct: 116 KLDGLAVSLLYEQGMLVRAATRGDGSTGEDITANVKTIRAIPLRLQGVAIPARIEVRGEV 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEI 249 ++ ++ F A+N+E G K +ANPRNAA+G LR+L+P R L F+ +G G Sbjct: 176 FMPQDGFEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGSGLLEGGT 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Y+ LQ+ + G PV+ V+ +++YY + + R L +DIDG+V KVD+ Sbjct: 236 LPDSHYQCLQRFKSWGLPVSERVKLCCGSAEVLAYYRQTEQDRPGLGFDIDGVVIKVDDI 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++Q++LG AR+PRW + KF ++ TRL ++ Q+GRTG +TPVARLEPV + G ++ Sbjct: 296 AIQERLGFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVQVAGVTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L D+R+GD V+V+RAG+VIP+VV ++ R DA Sbjct: 356 NATLHNADEIERL-----------DLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDALEIG 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RC+GGL C+AQ+ E LKHFVSR A ++EG+G + Sbjct: 405 FPTHCPVCGSEVER----TEGEAVA--RCSGGLICAAQRKESLKHFVSRRAMDVEGMGDK 458 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E + PAD++ L S K+ + G S T L ++ + R + Sbjct: 459 VIEQLVDKE----YVATPADLYRL------SAGKLTGLERMGPKSATKLIAALERSRETT 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF+F+LGIR VG A +LA ++ S Q A D SL RVP VG+++A Sbjct: 509 LARFLFALGIREVGEATAANLASHFGSLQ----------ALRAADLESLKRVPEVGEVVA 558 Query: 610 QAIVEFYQNPRNICAVEALLK--------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 IV F N ++ L+ E +P+ + + S K +V TG+L + Sbjct: 559 SHIVHFLSEAHNRQVIDELISDEVGIRWPEGAPA--QSAPAIDSPFAGKTVVLTGSLSVL 616 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A++ +T LGA VS +S+KTD++I G+ GSKL KA LG+++++E Q L +L Sbjct: 617 SRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKANALGIEVIDEAQMLRML 673 >gi|227356188|ref|ZP_03840577.1| DNA ligase [Proteus mirabilis ATCC 29906] gi|227163652|gb|EEI48568.1| DNA ligase [Proteus mirabilis ATCC 29906] Length = 675 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 257/712 (36%), Positives = 417/712 (58%), Gaps = 53/712 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L + +H+ Y+ P I D+EYD L + A+ P+L P+ P + Sbjct: 6 QQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELI---TPDSPTQR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + +V H IP LSL+ ++ F R+ + K++ I F E K+DG Sbjct: 63 VGALPLTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRE--RLKNNEEITFCCELKLDGL 120 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ YE G+ V AA RGDG +GE+++ +R I IP R+ NIP IE+RGEV++++ Sbjct: 121 AVSLLYENGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFMTEK 180 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKG 253 F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 181 GFEHLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL-PTS 239 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y LQ+ + G PV++ ++ ++ +Y+ + IR L +DIDG+V KVD+ +LQ+ Sbjct: 240 HYARLQQFKKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIALQE 299 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +R+PRW I++KF ++ T + D++ Q+GRTG +TPVARL+PV + G +++NATL Sbjct: 300 ELGFVSRAPRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNATL 359 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L +R+GD V+++RAG+VIP+VV +I +R +AQ FP+ Sbjct: 360 HNADEIERL-----------GLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFPTQ 408 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CPICQS D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + +D Sbjct: 409 CPICQS----DIERIEGEAVA--RCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKIIDQ 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + E ++ PAD+F L + + ++ G+ S L +++ K ++ + RF Sbjct: 463 LVEKE----YVKTPADLFRLDEKILSGLERM------GEKSAKKLLNALEKAKSTTFARF 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I++LGIR VG A L +++S + + NI A L VP VGDI+A+ +V Sbjct: 513 IYALGIREVGEATANGLTAHFVSLEALREA--NIEA--------LKAVPDVGDIVAKHVV 562 Query: 614 EFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 F+Q N ++ L+ ++ +P + HE + K +V TG+L ++ R +A++ Sbjct: 563 NFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAG-DNPFAGKTVVLTGSLSQLTRDEAKD 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA VS +S+KTD++I G+ GSKL KA +LG+ +++E++ + LL+Q Sbjct: 622 RLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGITVIDEDEMIRLLEQ 673 >gi|325576592|ref|ZP_08147310.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC 33392] gi|325161155|gb|EGC73270.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC 33392] Length = 675 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 264/712 (37%), Positives = 416/712 (58%), Gaps = 47/712 (6%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E +I ++++ +L ++ ++ Y+ P I D+EYD L + A+ A P+L Sbjct: 4 PLE--NIMSLQQQIDTLRHDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELIT 61 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++ P ++G + ++ H IP LSL+ ++ E+ F+ RI + + + Sbjct: 62 ADSPT---QRVGAKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLPE-PLT 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186 F EPK+DG ++I Y G AA RGDG +GED++A IR I IP ++L N P +E Sbjct: 118 FCCEPKLDGLAVSILYVNGILTQAATRGDGATGEDITANIRTIRNIPLQLLMDNPPARLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245 VRGEV++ F LN + + G K +ANPRNAA+G LR+L+P + R L +G+G Sbjct: 178 VRGEVFMPHAGFERLNQQALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGI 237 Query: 246 TSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS L YDIDG V Sbjct: 238 AEGVDLPNTHYDRLQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSALGYDIDGTVL 297 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+++ +LQ++LG +++PRW I++KF ++ TRL D++ Q+GRTG +TPVA+LEPV + Sbjct: 298 KINDIALQEKLGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVA 357 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D I+ L DI +GD V+++RAG+VIP+++ ++ + R D Sbjct: 358 GVTVSNATLHNGDEIERL-----------DIAIGDTVVIRRAGDVIPQIIGVLHDRRPAD 406 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+P FP CP+C S +VR G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+ Sbjct: 407 ARPIVFPKTCPVCDSAIVR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDID 460 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + ++ E + PAD+F L T+ T++E + G S N S+ K Sbjct: 461 GVGGKLIEQLVDRE----LVHTPADLFKL---DLTTLTRLERM---GAKSAENALASLEK 510 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +N +L RFIF+LGIR VG A +LA ++ + + A N D +L +VP V Sbjct: 511 AKNTTLARFIFALGIREVGEATALNLANHFKTLE----------ALQNADLEALQQVPDV 560 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 G+++A I+ F+ P N+ V L+ + V ++ + + K +V TGTL ++ R Sbjct: 561 GEVVANRILAFWHEPHNVAVVNDLIAQGVRWETVETKEVAENRFKGKTVVLTGTLTQMGR 620 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 ++A+ + +GA VS +S KTD +I GD GSKL KAQ+LGV ++ EE+FL Sbjct: 621 NEAKALLQDMGAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEEEFL 672 >gi|163845839|ref|YP_001633883.1| DNA ligase [Chloroflexus aurantiacus J-10-fl] gi|222523550|ref|YP_002568020.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl] gi|190359243|sp|A9WCA1|DNLJ_CHLAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781286|sp|B9LHI6|DNLJ_CHLSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|163667128|gb|ABY33494.1| DNA ligase, NAD-dependent [Chloroflexus aurantiacus J-10-fl] gi|222447429|gb|ACM51695.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl] Length = 709 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 270/713 (37%), Positives = 384/713 (53%), Gaps = 60/713 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL SL + YH YY PI+ D+EYDAL A+ A P+L P+ P ++ Sbjct: 12 ELRSLIRRYDYH---YYVLDDPIVSDAEYDALMTELRALEAAHPELI---TPDSPTQRVS 65 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G KV H P LSL + DL + R+ R D + + +EPKIDG + Sbjct: 66 GTPASQFAKVQHPQPMLSLGNAFTKADLLAWRDRVLRLLGP--DAIVAYVVEPKIDGLAV 123 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-----------LNIPEIIEVR 188 + Y G+ V A RGDG GEDV+A +R I +IP L +P IEVR Sbjct: 124 ALTYRDGRLVQGATRGDGEVGEDVTANLRTIGSIPLTLQATSTPQDDDLPTTLPTTIEVR 183 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ DF LND + A G K +ANPRNAA+G LR+ +PT R L FF +G+G Sbjct: 184 GEVYMRTADFETLNDRLAAAGEKIFANPRNAAAGSLRQKDPTITAARPLRFFAYGVGVVE 243 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 I Q++ L+ +R LGFPVN VR+ F +++Y + R LPY+ DG+V K+D Sbjct: 244 GISLSSQWQTLRYLRALGFPVNQDVRRFTDFAEVLAYCEAWMAKRDDLPYEADGVVIKID 303 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+ Q++LG R PRW I+ KF ++A TRLLDI + +GRTG++TP A LEPV IGG Sbjct: 304 DFAQQRELGVVGRDPRWAIAFKFPAREAITRLLDITVNVGRTGVVTPNAELEPVQIGGVT 363 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + NA+LHN DYI RDIR+GD V+VKRAG+VIP VV ++ R +P Sbjct: 364 VRNASLHNADYI-----------AQRDIRIGDYVIVKRAGDVIPYVVGPVIARRDGSERP 412 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + FP+ CP C S + R+ AA RC C AQ + R++HFVSR A +I G+G Sbjct: 413 WQFPTHCPACGSPLEREEGE------AAWRCNNFSICPAQLVRRVEHFVSRSALDIVGMG 466 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q + F + IR ADIF L+ Q + + GFG + NL +I+ R Sbjct: 467 ERQAELFVQRG----LIRDVADIFFLKADQ------LAELEGFGPKRIANLLAAIDAARQ 516 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L+R + LGIR+VG A++L S ++ I+A ++ L ++P +G + Sbjct: 517 RPLDRLLVGLGIRYVGTVAAQTLVAALGS-------LDAIMAARQEE---LEQIPGIGPV 566 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG--RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A +IV+F+ P N +E L+ +G S + K V TGTL + R + Sbjct: 567 VAASIVDFFSRPANRALIEK-LRAAGVQMGGVSGPTRQSDTLAGKTFVLTGTLPSLSREQ 625 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A + G V+ +S+KT ++ G N GSKL KA QLG+ +++E L L+ Sbjct: 626 ASALIVAHGGKVTDSVSKKTSYVVAGANAGSKLAKALQLGIPVIDEAGLLALI 678 >gi|219870289|ref|YP_002474664.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165] gi|254781340|sp|B8F314|DNLJ_HAEPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219690493|gb|ACL31716.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165] Length = 675 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 265/708 (37%), Positives = 417/708 (58%), Gaps = 49/708 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 SIE + L +E YH Y+ P++ D+EYD L + P+L S+ P Sbjct: 4 SIETQLEHLREKLREYEYH---YHVLDNPLVPDAEYDRLMNELKNLEWQHPELITSDSPT 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++G + ++TH IP LSL+ ++ +DL F+ RI + N I F EP Sbjct: 61 ---QRVGAKPLDGFAQITHEIPMLSLDNAFSDDDLTGFLRRIEDRI-AINSNQIEFCCEP 116 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG ++I Y G AA RGDG +GED++A IR I IP ++ + N P +EVRGEV Sbjct: 117 KLDGLAVSILYVDGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLEVRGEV 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTSE 248 ++ + F LN++ +A G K +ANPRNAA+G LR+L+P ++ LN + G+ ++ + Sbjct: 177 FMPQQGFEQLNEKALAKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGVYESDD 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ LQ ++ LG PVN + A + ++Y ++++ RS+L YDIDG V KV+E Sbjct: 237 ELPTTHFDRLQWLKTLGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTVLKVNE 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G + Sbjct: 297 ITLQEQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVAGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L I +GD V+++RAG+VIP++V ++ R +A+ Sbjct: 357 SNATLHNGDEIERL-----------GIAIGDTVIIRRAGDVIPQIVGVVAERRPDNAKKI 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +FP+ CP+C S VVR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G+ Sbjct: 406 AFPTACPVCNSAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGE 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + E I PAD+F L T+ +++ + G+ S N SI K +N Sbjct: 460 KLIEQLMERE----LIHTPADLFKL---DHTTLMRLDRM---GEKSANNALQSIEKAKNT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF+F+LGIR VG A++LA ++ + Q D +L +V VG+++ Sbjct: 510 TLARFLFALGIRDVGESTAQNLANHFGTLDAIRQA----------DLDTLKQVQDVGEVV 559 Query: 609 AQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A + +F+Q P N+ VE L+ + V+ ++ + +++K +V TGTL ++ R +A+ Sbjct: 560 ANRLFQFWQEPHNVEVVEDLIAQGVTWQDVVPQEIADNPLKDKTVVLTGTLTQLTRDQAK 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + QLG VS +S KTD +I G+ GSKL KAQ+LGVKI++E++ + Sbjct: 620 ALLQQLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELI 667 >gi|260598800|ref|YP_003211371.1| NAD-dependent DNA ligase LigA [Cronobacter turicensis z3032] gi|260217977|emb|CBA32625.1| DNA ligase [Cronobacter turicensis z3032] Length = 672 Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust. Identities = 259/716 (36%), Positives = 416/716 (58%), Gaps = 53/716 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R A+ A P+L P+ Sbjct: 1 MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ F R+ + K+ +++ + E K Sbjct: 58 PTQRVGAAPLTAFSQVRHEVPMLSLDNVFDEASFLAFNKRVQD--RLKNTDALVYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GED++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQTGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + LQ+ + G PV++ +R T ++++Y ++++ R TL +DIDG+V KVD Sbjct: 236 -PRSHMARLQQFKAWGLPVSDRIRLVKTPEDVLAFYRQVEADRPTLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++ Sbjct: 295 ELQEQLGFVARAPRWAVAFKFPAQEQLTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I L +R+GD+V+++RAG+VIP+VV+++++ER + +P Sbjct: 355 NATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTQCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S NL ++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNLVTALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA ++ + + IN I DD L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAHFGTLEAL---INASI----DD---LQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 + F++ N + L +EV +P + + E+ + S K +V TG+L ++ R Sbjct: 558 THVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEE-IDSPFAGKTVVLTGSLSQMSRD 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL + Sbjct: 617 DAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 672 >gi|319941620|ref|ZP_08015944.1| DNA ligase [Sutterella wadsworthensis 3_1_45B] gi|319804850|gb|EFW01704.1| DNA ligase [Sutterella wadsworthensis 3_1_45B] Length = 745 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 266/722 (36%), Positives = 402/722 (55%), Gaps = 53/722 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ALS +QA + LE E+ + YY +P + D+EYD A+ FP+L + Sbjct: 51 ALSPDQAPARMHQLETELERWNYEYYVLDEPSVPDAEYDRAFNELKALEARFPEL---KS 107 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIF 127 P ++GG + KV H +P LS+ E ++ F R+ +D + Sbjct: 108 RTSPTLRVGGAVRTGFKKVRHDVPMLSIHTETDFSAAGAAAFDERVRSALGLSPEDPPVE 167 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + E K DG +RYEKG A+ RGDG GEDV+A +R I TIP L+ +P+I+EV Sbjct: 168 YDCELKFDGLATNLRYEKGVLTEASTRGDGVEGEDVTANVRTIRTIPLRLNGKVPDILEV 227 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE + K DFLALN A G KP+ANPRNAA+G LR+L+ + R L+F+ + LG+ Sbjct: 228 RGECIMHKADFLALNARQEAAGEKPFANPRNAAAGSLRQLDSSVTAQRTLHFYGYSLGEV 287 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE FA+ Q +L + LGFPV + + ++++++ + R++LP++IDG+VYKV Sbjct: 288 SEPFAETQSGVLDRFAELGFPVAHMREVVKGPEALAAFHDKVAAARASLPFEIDGVVYKV 347 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + L+++LG AR PRW +HK+ ++ T++L ID+Q+GRTG LTPVARL PV +GG Sbjct: 348 NSLELEEELGFIAREPRWACAHKYPPEEVLTQVLGIDVQVGRTGRLTPVARLAPVYVGGV 407 Query: 367 LITNATLHNEDY-IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++NATLHNED+ +K L D+RVGD V+++RAG+VIP+++ ++ R Sbjct: 408 TVSNATLHNEDHVVKDL-----------DLRVGDTVVLRRAGDVIPEILRVVKERRPAGT 456 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F P CPIC S V+RD K RCTGGL C AQ + HF +R A I+G Sbjct: 457 KVFEMPHVCPICGSAVIRDEEEKD------MRCTGGLVCPAQMKLSIVHFAARRAMGIDG 510 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQ-------RRQQTSTTKIENILGFGDVSVTNL 538 LG++ +D D ++ PAD+F L + K E + G + NL Sbjct: 511 LGEKIVDMLV---DEGL-VKTPADLFGLTLEALTAPTTATAGSEKPEKRM--GPKAAANL 564 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 SI + +L RF+F+LG RHVG A LA ++ + A N +L Sbjct: 565 LASIQASTHTTLARFVFALGCRHVGEATALGLANHF----------GTLSAIENASMEAL 614 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTG 656 VP VG+++A++I F++ P N ++AL+ P++ EK S + K V TG Sbjct: 615 TGVPDVGEVVAESIYAFFREPHNRTVIDALIARGIRWPAV---EKTAPSLVSGKTFVLTG 671 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL + R +A++ +T GA V+ +SR+T ++ G + GSKL KA++LG+ +++E + L Sbjct: 672 TLPTLSRDEAKDRLTAQGAKVAGSVSRRTWCVVAGADAGSKLSKAEELGIPVIDEAKLLM 731 Query: 717 LL 718 LL Sbjct: 732 LL 733 >gi|187477571|ref|YP_785595.1| DNA ligase [Bordetella avium 197N] gi|123752160|sp|Q2KUU5|DNLJ_BORA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115422157|emb|CAJ48681.1| DNA ligase [Bordetella avium 197N] Length = 695 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 278/735 (37%), Positives = 408/735 (55%), Gaps = 74/735 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + AR++ + L EI+ H+ YY Y +P I D++YDAL R A+ P+L P+ P Sbjct: 6 QAAREQAARLRAEIAQHNIRYYVYDEPSITDADYDALMRELMALEAQHPELV---TPDSP 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-----DNSIFFT 129 ++G V H++P LSL + ED+ F R+ ++ + + +F Sbjct: 63 TQRVGAAPLAEFGSVRHAVPMLSLGNGFEDEDVLAFDKRVSDTLREAGLLGPAEQAHYFC 122 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E K+DG I++RYE G+ V AA RGDG GEDV+A IR I IP L P ++EVRG Sbjct: 123 -ELKLDGLAISLRYENGELVQAATRGDGQEGEDVTANIRTIRAIPLQLRAGAPAVLEVRG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF------VHG 242 EV +++ DF LN + A G K + NPRNAA+G LR+L+P R L FF V G Sbjct: 182 EVLMNRADFEKLNQKQAARGEKIFVNPRNAAAGSLRQLDPRVTAQRPLRFFAYSWGEVQG 241 Query: 243 L-------------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYN 286 L G S + ML + LG PVN VR +A G++++Y Sbjct: 242 LSRDDAPAFDEASPGLVSTLPRDTHGGMLDWLAGLGLPVN--VRFNHKAQGAEGLLAFYR 299 Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346 + + R +LPYDIDGLVYKVD + Q+ LG AR+PRW ++HKF ++A+T LLDI++Q+ Sbjct: 300 RIGAERGSLPYDIDGLVYKVDALAAQRVLGYVARAPRWALAHKFPAEEATTELLDIEVQV 359 Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406 GRTG +TPVARL+PV +GG +TNATLHNED I+ +D+R+GDRV+V+RA Sbjct: 360 GRTGAITPVARLKPVFVGGVTVTNATLHNEDEIR-----------RKDVRIGDRVIVRRA 408 Query: 407 GEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466 G+VIP+VV ++ +R + F P+ CPIC S + R ++ A RCTGGL C A Sbjct: 409 GDVIPEVVGPVLEKRSGELPQFVMPTHCPICGSAIERLVDE------AIARCTGGLFCPA 462 Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526 Q+ + L H R A +IEGLG++ ++ + S++ AD+F L + + ++ Sbjct: 463 QRKQTLLHAAGRKALDIEGLGEKLVEQLVDNG----SLKTLADVFRLNAFELAALDRM-- 516 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 G S NL +I++ R SL R +F+LGIRHVG AR +A+++ N Sbjct: 517 ----GKKSADNLVAAIDQARRPSLGRLLFALGIRHVGETTARDVARHF----------GN 562 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSS 645 I A + D +L+ VP VG ++A +I F+Q N + L K+ V P + S Sbjct: 563 IDAIMDADEAALLAVPDVGPVVAGSIHRFFQEAHNREVIRELEKQGVHPQA--EAQLQSG 620 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 ++ K V TGT+ R +A ++ G VS +S+KT ++ G+ GSKL KA++LG Sbjct: 621 DLAGKTFVLTGTMPTWSRDEATRHILAAGGKVSGSVSKKTAYVVAGEEAGSKLVKARELG 680 Query: 706 VKIMNEEQFLFLLQQ 720 V I++E+ LL Q Sbjct: 681 VTILDEDGLKALLSQ 695 >gi|149374973|ref|ZP_01892746.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893] gi|149360862|gb|EDM49313.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893] Length = 676 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 258/699 (36%), Positives = 400/699 (57%), Gaps = 47/699 (6%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 I+ H+ YY P + D+EYD L R + +PD+ P+ P ++GG + + Sbjct: 19 ITEHNYQYYVLDDPRVPDAEYDRLFRELQDLETQYPDIVT---PDTPTRRVGGSVETTFE 75 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 +V H IP LSL+ ++ E+LR F R+ + DD I + EPK+DG +++ YE G Sbjct: 76 EVVHRIPMLSLDNAFSDEELRDFDRRVKDRLKTGDD--IEYVCEPKLDGLAVSLHYESGV 133 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 AA RGDG++GED++A IR IP++P R+ +PE++EVRGEVY+ + F ALN + Sbjct: 134 LTRAATRGDGYTGEDITANIRTIPSVPLRLRGDKVPELVEVRGEVYMPREGFEALNRRLA 193 Query: 207 AVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE-IFAKGQYEMLQKMRCL 264 G K + NPRNAA+G LR+ PT R L + + E + +E LQ++ Sbjct: 194 NKGEKTFVNPRNAAAGSLRQKKPTVTARRPLELCAYSVALEDESLLPATHWEGLQQVSAW 253 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 GF +N +R+A + YNE+ R++LPY+IDG+V+KV+ +LQ+QLG +R+PRW Sbjct: 254 GFRINPEMRRATGAEDCLQAYNELMGKRASLPYEIDGIVFKVNSLALQQQLGFVSRAPRW 313 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 I+ KF ++ T + D++ Q+GRTG +TPVARL+PV +GG ++NATLHN D I+ LDA Sbjct: 314 AIAQKFPAQEELTVIEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATLHNMDEIRRLDA 373 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 R+GD V V+RAG+VIP+VV ++ R +A+ P CP+CQS +V+ Sbjct: 374 -----------RIGDTVFVRRAGDVIPQVVKVVAERRPANAREVELPDACPVCQSDIVQ- 421 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 G++VA RC+GGL C AQ+ E ++H+ SR A +IEGLG + +D E + Sbjct: 422 ---IEGEVVA--RCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDILVDRE----LV 472 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 AD++ L++ T ++ G+ S NL D+I++ R L +F+++LGIR VG Sbjct: 473 NTVADLYLLKKADLTGLERM------GEKSAGNLIDAIDRSRKPVLWKFLYALGIREVGE 526 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 A+ LA Y+ + ++ I+ ++D +L VP VG I+A I F+ N Sbjct: 527 ATAKGLASYFGTLES--------ISEADED--ALQSVPDVGPIVAGHIRSFFDQTHNQET 576 Query: 625 VEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 ++A LK+ E S + ++ + V TG+L + R A+ + LGA V+ +S Sbjct: 577 IQA-LKDAGVQWQAEEITASQKPLKGETWVLTGSLSGMTRDDAKSKLESLGAKVAGSVSG 635 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 KT ++ G+ GSKL KA+ LGV +M+E F+ L + Sbjct: 636 KTSCVVAGEAAGSKLTKAENLGVPVMDESAFVDFLATHG 674 >gi|197285679|ref|YP_002151551.1| NAD-dependent DNA ligase LigA [Proteus mirabilis HI4320] gi|254781393|sp|B4EZR2|DNLJ_PROMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194683166|emb|CAR43788.1| DNA ligase [Proteus mirabilis HI4320] Length = 675 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 257/712 (36%), Positives = 416/712 (58%), Gaps = 53/712 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L + +H+ Y+ P I D+EYD L + A+ P+L P+ P + Sbjct: 6 QQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELIT---PDSPTQR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + +V H IP LSL+ ++ F R+ + K++ I F E K+DG Sbjct: 63 VGALPLTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRE--RLKNNEEITFCCELKLDGL 120 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ YE G+ V AA RGDG +GE+++ +R I IP R+ NIP IE+RGEV++++ Sbjct: 121 AVSLLYENGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFMTEK 180 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKG 253 F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 181 GFEHLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL-PTS 239 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y LQ+ + G PV++ ++ ++ +Y+ + IR L +DIDG+V KVD+ +LQ+ Sbjct: 240 HYARLQQFKKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIALQE 299 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +R+PRW I++KF ++ T + D++ Q+GRTG +TPVARL+PV + G +++NATL Sbjct: 300 ELGFVSRAPRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNATL 359 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L +R+GD V+++RAG+VIP+VV +I +R +AQ FP+ Sbjct: 360 HNADEIERL-----------GLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFPTQ 408 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CPICQS D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + +D Sbjct: 409 CPICQS----DIERIEGEAVA--RCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKIIDQ 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + E ++ PAD+F L + + ++ G+ S L +++ K ++ + RF Sbjct: 463 LVEKE----YVKTPADLFRLDEKILSGLERM------GEKSAKKLLNALEKAKSTTFARF 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I++LGIR VG A L +++S + + NI A L VP VGDI+A+ +V Sbjct: 513 IYALGIREVGEATANGLTAHFVSLEALREA--NIEA--------LKAVPDVGDIVAKHVV 562 Query: 614 EFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 F+Q N ++ L+ ++ +P + HE + K +V TG+L ++ R +A++ Sbjct: 563 NFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAG-DNPFAGKTVVLTGSLSQLTRDEAKD 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA VS +S+KTD++I G+ GSKL KA +LG+ +++E++ + LL Q Sbjct: 622 RLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGITVIDEDEMIRLLDQ 673 >gi|88607345|ref|YP_504763.1| DNA ligase, NAD-dependent [Anaplasma phagocytophilum HZ] gi|123736456|sp|Q2GLI8|DNLJ_ANAPZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|88598408|gb|ABD43878.1| DNA ligase, NAD-dependent [Anaplasma phagocytophilum HZ] Length = 677 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 263/716 (36%), Positives = 413/716 (57%), Gaps = 43/716 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S +R+ L+ L ++ HD Y+++ P I D++YDAL + + FP+L+ D Sbjct: 1 MSDNDSRRRLADLNAQLKLHDVLYHEHDAPEISDAQYDALVQEKRELLEKFPELSAYNDY 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 G + + ++ L K+ H P LSLE + I+D+ KFI+R+ R + SI E Sbjct: 61 EGVIGAL--TVDARLPKIAHREPMLSLENSFTIQDVEKFISRVKRSLNMDPEVSITIACE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG YEKG + A RG+GH GED++ + I +P ++ N PE++EVRGE+ Sbjct: 119 PKIDGLSFAALYEKGSLIRVATRGNGHLGEDITNTAKVIRKLPHKIA-NAPEVLEVRGEI 177 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 Y+ +DF L D +ANPRNAA+G +R+LNP R L + + + ++ Sbjct: 178 YMHHSDFEKLKDVC------NFANPRNAAAGSIRQLNPKIAEERNLRYVAYCIVNSA--- 228 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q +L+++ GF + V A+ +S++ M + RSTL YDIDG+VYKV++ Sbjct: 229 LASQEAILKQLAEWGFCTHTEVLFADNMDDALSFHTRMYNTRSTLGYDIDGIVYKVNDTH 288 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQK LG ++ PRW +HKF +A T+L DI +Q+GRTG++TP+A LEP+NIGG L++ Sbjct: 289 LQKLLGSTSKYPRWATAHKFPSTEAITKLRDISVQVGRTGVITPIAELEPINIGGTLVSR 348 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP--F 428 A+LHN + I +DIR+GD V+VKRAGEVIP+VV + R A P + Sbjct: 349 ASLHNLNEI-----------ARKDIRIGDSVIVKRAGEVIPQVVGVDHTARCNSAVPEEY 397 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FPS CP C S + R G++ A RCT L+C AQ LER+KHFVSRD NI GLG+ Sbjct: 398 VFPSHCPSCGSTLSR----APGEV--AMRCTAELSCQAQVLERVKHFVSRDGLNIVGLGE 451 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +Q++FF A I ADIF+L R++ S + G+G+ S+ L ++IN + Sbjct: 452 KQIEFFCN----ASYISNVADIFSL--REKISHMNLSAEHGWGEKSIALLINAINASTTV 505 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L FIF+LGIR +G A+ +A++Y SY + + + ++ + D + I + + Sbjct: 506 KLSNFIFALGIRFIGKGAAKLIAEHYRSYSAWVRAMTSLANGEDPDNIHGIGLKSI---- 561 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +++ F+ + N+ ++ L ++++ +S I K +VFTG L+ + R++A + Sbjct: 562 -ESLRAFFSSEDNLRVLQTLEEKLNILNEIANTETASPISGKTIVFTGVLEDMSRNEAAK 620 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 Y LGA V ++ KTDI++ G N GSKL+ A++LG+++MNE ++ LL+ + + Sbjct: 621 YAETLGAKVGNTVTTKTDILVAGSNSGSKLDTARKLGIQVMNESEWKDLLKTVSNS 676 >gi|332306125|ref|YP_004433976.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173454|gb|AEE22708.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5] Length = 677 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 272/721 (37%), Positives = 413/721 (57%), Gaps = 57/721 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ALS Q +L + E +Y YY P + D+EYD L R I A PDL RS Sbjct: 4 ALSPAQRLTQLINTINEYNYQ---YYVQDNPSVPDAEYDRLMRELLDIEKAHPDL-RS-- 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P K+GG + +V H +P LSL+ ++ +D+ F RI + K + I F+ Sbjct: 58 PDSPSQKVGGAALSAFEQVEHEVPMLSLDNAFDEDDMFAFEKRIKD--RLKITSEISFSC 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEV 187 EPK+DG ++I YE GK V AA RGDG GE+++ +R I +P LSL + P+ +EV Sbjct: 116 EPKLDGLAVSILYEDGKLVRAATRGDGRVGENITTNVRTIANVP--LSLRGEDFPQRLEV 173 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244 RGEV +++ F LN+ I G+KP+ NPRNAA+G LR+L+P R L F+ + LG Sbjct: 174 RGEVIMTRAGFDILNEAQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLV 233 Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + L+++ G P++ + A ++Y++++ +RS L YDIDG+V Sbjct: 234 ENEQQPLGTTHSARLKQLSDWGLPLSKELEVAQGAKECLTYFHKIGELRSQLSYDIDGVV 293 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 +KVD+ ++Q+ LG AR+PRW I+HKFA ++ + LLD++ Q+GRTG +TPVARL P + Sbjct: 294 FKVDDIAMQQTLGFVARAPRWAIAHKFAAQEEMSTLLDVEFQVGRTGAITPVARLAPTFV 353 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHN+D I L I++GD V+++RAG+VIP++V I+ ++R Sbjct: 354 GGVTVSNATLHNQDEINRL-----------GIKIGDSVIIRRAGDVIPQIVAIVADKRPD 402 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA+ FP CP+C S V + G+ VA RCTGGL C AQ+ E +KHF SR A +I Sbjct: 403 DAKDILFPESCPVCSSAVEK----LEGEAVA--RCTGGLYCKAQRKEAMKHFASRKALDI 456 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG + ++ ++ ++ PAD F L +S ++ G+ S NL +S+ Sbjct: 457 DGLGDKLIEQLVDAD----MVKSPADFFALDIAPLSSMERM------GEKSAVNLVNSLG 506 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + +L +F++SLGIR VG A++LA ++L+ Q D +L V Sbjct: 507 KSKKTTLAKFLYSLGIREVGEATAQNLALHFLTLDAIEQA----------DLDALQAVSD 556 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI 661 VG I+AQ +V F++ N+ + A L+E + EK E + + V TGTL + Sbjct: 557 VGIIVAQHVVNFFKEEHNLEVISA-LQEAGVHWPKIEKIAVDELPLAGQVYVLTGTLNVM 615 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R++A+ + LGA VS +S KTD ++ G+ GSKL KAQ LGVK+MNE++ L + + Sbjct: 616 DRNQAKAKLQSLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMNEDEMLAMFAEL 675 Query: 722 N 722 + Sbjct: 676 D 676 >gi|148259769|ref|YP_001233896.1| DNA ligase, NAD-dependent [Acidiphilium cryptum JF-5] gi|166215383|sp|A5FWJ5|DNLJ_ACICJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146401450|gb|ABQ29977.1| DNA ligase, NAD-dependent [Acidiphilium cryptum JF-5] Length = 682 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 269/700 (38%), Positives = 407/700 (58%), Gaps = 44/700 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + L+ L + ++ D YY+ PI+ D+ YDAL+R +++ A PDLA + L++ Sbjct: 15 KARLAELVERLAAADAAYYRDDAPIMDDAAYDALRREAESLRAAHPDLAAA------LDQ 68 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + + KV H +P LSL+ ++ D +F I RF + F EPKIDG Sbjct: 69 VGAAPSGAFGKVRHRLPMLSLDNVFEPADFVEFCASIRRFL-GLGAAPLAFVAEPKIDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE +FV A RGDG GEDV+ +R + +P L + P+ IE+RGEVY++K D Sbjct: 128 SISLTYENRRFVRGATRGDGTEGEDVTENLRTLRELPATLPDDAPDFIEIRGEVYMTKTD 187 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F+ LN + +ANPRNAA+G LR+L+P +R L+ F + G S+ + ++ Sbjct: 188 FITLNQGQA----RQFANPRNAAAGSLRQLDPAVTASRRLSLFAYARGAASQAVGETHWD 243 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L +R GFPVN + + G + + R+ L YDIDG+VYK+D+ +LQ++LG Sbjct: 244 YLAILRRWGFPVNPLAERVSE-AGAEPFQRSIGERRAGLDYDIDGVVYKIDDLALQERLG 302 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 R+PRW ++ KF ++A T LL IDIQ+GRTG LTP ARL+PVN+GG L+++ATLHNE Sbjct: 303 FAGRAPRWAVAWKFPAERALTTLLGIDIQVGRTGALTPRARLDPVNVGGVLVSHATLHNE 362 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +D+R+GD V ++RAG+VIP+++ + R D+ PF FP CP+ Sbjct: 363 DEI-----------ARKDVRIGDTVELQRAGDVIPQILRALPERRPADSVPFVFPDHCPV 411 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +R G++V RCTGGL+C AQ +ERL HF SR AF+IEG+G++ + F Sbjct: 412 CGALAIR----PAGEVV--RRCTGGLSCPAQVVERLIHFCSRLAFDIEGMGEKTVQEFHG 465 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + PADIFTL+ R+ I + G+G+VS L +I+ RR ISL RFI++ Sbjct: 466 ----LGWLESPADIFTLRDRE----AAIAALEGWGEVSARKLIAAIDARRRISLARFIYA 517 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G + A+ LA++Y SY + +++ +D L L + +G IA+ + F+ Sbjct: 518 LGIRRIGEQNAKLLARHYSSYAVWRRQMEEAGVIGSDARLELGSISGIGPSIAEELAGFF 577 Query: 617 QNPRNICAVEALLKEVSP--SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 P N LL + P +I + K +VFTGTL+ + R +A+ LG Sbjct: 578 AEPHN----RDLLDRLVPMLTIEDEVAAAGGALAGKTIVFTGTLESLTRPEAKARAEALG 633 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 A V+ +S+KTD ++VG + GSK KA LGV +++E +F Sbjct: 634 ARVTESVSKKTDFVVVGADAGSKAAKAASLGVTVLSEAEF 673 >gi|312796238|ref|YP_004029160.1| NAD-dependent DNA ligase [Burkholderia rhizoxinica HKI 454] gi|312168013|emb|CBW75016.1| NAD-dependent DNA ligase (EC 6.5.1.2) [Burkholderia rhizoxinica HKI 454] Length = 681 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 267/717 (37%), Positives = 409/717 (57%), Gaps = 58/717 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S ++ + + L E+ + YY +P I D+EYD L + + I PDL P+ Sbjct: 9 SADRPAERAAWLRTELDRANHAYYVLDRPEIPDAEYDKLFKELEQIEADHPDLI---TPD 65 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG + + H +P LSL + D+ F R+ Q D + + E Sbjct: 66 SPTQRVGGAVAEGFAPIVHDVPMLSLNNGFEDSDVDAFDKRVSDVLQHGD---VEYACEL 122 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191 K DG I++RYE G+FV A+ RGDG +GEDV+A +R I ++P L+ N +P++I+VRGEV Sbjct: 123 KFDGLAISLRYENGRFVQASTRGDGTTGEDVTANVRTIRSLPLTLNGNAVPKVIDVRGEV 182 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 + K DF LN G++ +ANPRNAA+G LR+L+ + IT R L+FF +G+G + Sbjct: 183 LMFKRDFERLNARQREAGQREFANPRNAAAGSLRQLD-SRITAKRPLSFFAYGIGVLDGV 241 Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +L +G PVN G++ ++ + + R++LPYDIDG+VYKV+ Sbjct: 242 PMPDTHSALLDWYVNMGLPVNKERAVVRGAAGLLVFFRGVGARRASLPYDIDGVVYKVNR 301 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q +LG +R+PR+ ++HKF ++A TRLL I++Q+GRTG +TPVARLEP+ +GGA + Sbjct: 302 RDEQDRLGFVSRAPRFALAHKFPAEEALTRLLAIEVQVGRTGAITPVARLEPIFVGGATV 361 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHNED ++ +DI +GD V+V+RAG+VIP+VV I R DA+PF Sbjct: 362 TNATLHNEDEVR-----------RKDILIGDTVIVRRAGDVIPEVVGAIKERRPVDARPF 410 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + P+ CP+C S + R + A RCTGGL C+AQ+ + L HF R A +I+GLG+ Sbjct: 411 TMPTHCPVCGSAIERLPDE------AIARCTGGLVCAAQRKQALWHFAQRRALDIDGLGE 464 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +D + IR PAD+F+L + + F D S NL DS+ + R+ Sbjct: 465 KIIDQLVEQS----LIRTPADLFSL------GFATVAQLDRFADKSAQNLIDSLERARHT 514 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGIRHVG AR LA+++ S +N +I + + +L+ V VG ++ Sbjct: 515 TLPRFIYALGIRHVGEATARDLARHFGS-------LNALIDASEE---ALLEVNDVGPVV 564 Query: 609 AQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 A+AI F+ P N +E L E P+ + + + +V TGTL + Sbjct: 565 AEAIRHFFSEPHNRMVIEQLRAAGVQWPEGPPA----PRKPAGPLAGMTVVLTGTLPTLS 620 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A+E + GA V+ +S+KT+ ++ G + GSKL KA++LG+ I++EE LL+ Sbjct: 621 REAAKERLEAAGAKVAGSVSKKTNYVVAGADAGSKLTKAEELGIPIVDEEGMRRLLE 677 >gi|332290231|ref|YP_004421083.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179] gi|330433127|gb|AEC18186.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179] Length = 671 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 263/714 (36%), Positives = 403/714 (56%), Gaps = 51/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++ + L ++ YH+ Y+ P+I D+EYD + + + P+L + P Sbjct: 1 MDDLQQHIEQLRNDLRYHEYQYHVLDNPVIPDAEYDRMMNQLKRLEAEHPELITDDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + ++ H +P LSL+ ++ E+ FI RI D F EPK Sbjct: 60 --QRVGAKPANGFQQIRHELPMLSLDNAFSDEEFFAFIRRIEDRLGVLPD-PFTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVY 192 +DG ++I Y GK AA RGDG +GED++A IR I IP L P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGKLTQAATRGDGVTGEDITANIRTIRNIPLQLRTATPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-F 250 + + F LN+ + G K +ANPRNAA+G LR+L+P R L +G+G + Sbjct: 177 MPHDGFERLNNHALEHGEKTFANPRNAAAGSLRQLDPQVTYHRPLMLNAYGIGIAEGVEL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ LQ ++ +G PVN +R N ++ +Y + RS+L YDIDG V KV+ Sbjct: 237 PNTHYDRLQWLKSIGIPVNKEIRLCNGTTEVLDFYRSIAEKRSSLGYDIDGTVLKVNSIP 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG +R+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQEQLGFISRAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLEPVYVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L DI +GD V+++RAG+VIP+++ ++ + R PDA+P F Sbjct: 357 ATLHNGDEIARL-----------DIAIGDTVIIRRAGDVIPQIIGVVHDRRPPDAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S +VR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTRCPVCDSAIVR----IDGEAVA--RCTGGLVCEAQRKEGLKHFVSRKAMDIDGVGDKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRN 547 ++ E + P D+FTL + E ++G G+ S SI K + Sbjct: 460 IEQLVDRE----YLHTPVDLFTLSK---------ETLMGLERMGEKSAEKALASIEKAKK 506 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF+F+LGIR VG AR+LA ++ + +N N + L +V +G++ Sbjct: 507 TTLARFLFALGIREVGEATARNLANHFHTLENI----------KNATFEQLQQVQDIGEV 556 Query: 608 IAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +A I+ F+Q N VE L+++ V+ + + ++ K +V TGTL ++ R +A Sbjct: 557 VANRIILFWQEQHNRNVVEKLIEQGVTWDDVNATEIADNPLKEKTVVLTGTLTQMTRDQA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + QLG V+ +S KTD +I GDN GSKL+KA+ LGVK++ E+QFL L+ Q Sbjct: 617 KALLLQLGCKVAGSVSSKTDFVIAGDNAGSKLQKAESLGVKVLTEQQFLDLIPQ 670 >gi|294635487|ref|ZP_06713972.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685] gi|291091145|gb|EFE23706.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685] Length = 675 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 263/718 (36%), Positives = 416/718 (57%), Gaps = 60/718 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +IEQ +L L + +H+ YY +P + D+EYD L + A+ +P L ++ P+ Sbjct: 4 TIEQ---QLEQLRAALRHHEYQYYVLDEPQVTDAEYDRLMMQLKALESDYPQLVTADSPS 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++GG + +V H +P LSL+ +++ E R F R++ + K D ++ F E Sbjct: 61 ---QRVGGAPLAAFGQVHHEVPMLSLDNVFDEESYRAFDKRLHE--RLKSDAALTFCCEL 115 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG +++ YE+G V AA RGDG +GED+++ ++ I IP R+ +IP+ IEVRGEV Sbjct: 116 KLDGLAVSLLYEQGVLVRAATRGDGSTGEDITSNVKTIRAIPLRLQGEDIPDRIEVRGEV 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK-TSEI 249 ++ + F A+N+E G K +ANPRNAA+G LR+L+P R L F+ +G G Sbjct: 176 FMPQAGFEAMNEEARRRGGKIFANPRNAAAGSLRQLDPRITARRPLTFYCYGAGLLEGGT 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Y+ LQ+ + G PV+ V++ + +++YY + + R TL +DIDG+V KVD+ Sbjct: 236 LPGSHYQCLQRFKSWGLPVSERVKRCHGSDEVLAYYRQTEQDRPTLGFDIDGVVIKVDDI 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+ LG AR+PRW + KF ++ T+L ++ Q+GRTG +TPVARLEPV + G ++ Sbjct: 296 ATQEALGFVARAPRWATAFKFPAQEQMTQLNGVEFQVGRTGAITPVARLEPVQVAGVTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD V+V+RAG+VIP+VV ++ ++R DA Sbjct: 356 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVESQRPADATEIL 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RC+GGL C+AQ+ E LKHFVSR A ++EG+G + Sbjct: 405 FPTHCPVCGSEVER----IEGEAVA--RCSGGLICAAQRKESLKHFVSRRAMDVEGMGDK 458 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + E + PAD++ L S K+ + G S L ++++ R+ + Sbjct: 459 VIEQLVERE----YVTTPADLYRL------SAGKLTGLERMGPKSANKLIAALDRSRSTT 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF+F+LGIR VG A +LA ++ ++ A D SL VP VG+++A Sbjct: 509 LARFLFALGIREVGEATAANLASHF----------GSLSALRGADLESLKSVPEVGEVVA 558 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-----SEIEN----KKLVFTGTLQK 660 + I F N ++ L +S IG H +V+ +EI++ K +V TG+L Sbjct: 559 RHIRHFLSEAHNCQVIDEL---ISAEIGIHWPDVTPALQAAEIDSPFAGKTVVLTGSLSV 615 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A++ + LGA VS +S+KTD++I G+ GSKL KA LG+ +++E Q L +L Sbjct: 616 LSRDEAKDRLVALGAKVSGSVSKKTDLVIAGEAAGSKLVKANTLGITVIDEAQLLQML 673 >gi|148284934|ref|YP_001249024.1| NAD-dependent DNA ligase LigA [Orientia tsutsugamushi str. Boryong] gi|166216222|sp|A5CEY0|DNLJ_ORITB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146740373|emb|CAM80812.1| NAD-dependent DNA ligase [Orientia tsutsugamushi str. Boryong] Length = 698 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 263/720 (36%), Positives = 424/720 (58%), Gaps = 36/720 (5%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I IE L+ + A+K + L E+ +D YY + P++ D++YD LK + I FP LA Sbjct: 9 INIEQLTSDHAKKIVDFLALELQKYDQAYYSDNNPLVTDAQYDVLKNLNNKIVAKFPHLA 68 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 D + K+G + KV H P LSL + +ED+ FIT+I F K D+ Sbjct: 69 LVNDHS---KKVGFTPSAQFSKVVHLKPMLSLANGFCVEDISNFITKIQNFL--KIDHCP 123 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 E KIDG RYE G A+ RGDG GE+++ ++ I + P+ L + ++ E Sbjct: 124 KIVCEYKIDGLSFNARYEYGVLTLASTRGDGQIGENITENLKTIQSFPQTLPIT-DKVFE 182 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGE+YI+ NDF LN + +G+ ++NPRNAA+G +R+L+P R L +FV+ LG+ Sbjct: 183 VRGEIYITNNDFRVLNIQQQKLGKALFSNPRNAAAGSIRQLDPAITAQRPLKYFVYALGE 242 Query: 246 -TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 T+ FA Q+E+LQK+ L F VN ++ H ++ +YN + + R+ L ++IDG+VY Sbjct: 243 VTNHHFASTQFELLQKLSQLKFSVNTDYILSDNLHSMIEFYNNVATERNNLAFEIDGVVY 302 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++F+LQ++LG + SPR+ I++KF T++ +I +Q+G+TG +TPVA L P+NI Sbjct: 303 KVNDFALQERLGATSTSPRFAIAYKFPALIGRTKITNITLQVGKTGAVTPVALLIPINIA 362 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G I+ ATLHN+ I+ +DIR+GD V + RAG+VIPK+ + ++ R D Sbjct: 363 GVTISRATLHNKQEIE-----------SKDIRIGDYVFLHRAGDVIPKINGVDLSAR--D 409 Query: 425 AQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 AQ F FP+ CP C +V + G+ VA RC LAC AQ ER+ HFVS+DA Sbjct: 410 AQSSTRFIFPATCPSCNQNLVVN----EGETVA--RCGNSLACPAQIYERICHFVSKDAL 463 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ-TSTTKIENILGFGDVSVTNLYD 540 NI+GLG+Q++ F D + + I DIF L+ + S+ K+E+I G+G SV L+ Sbjct: 464 NIDGLGRQRIRFLL---DNKYIVNI-VDIFLLEENNKLLSSNKLEDIAGWGIKSVNKLFK 519 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +IN+ +N+ L+RFI++L ++HVG A+ LAK + + +NF + + + + + L Sbjct: 520 NINQAKNVILDRFIYALAVKHVGKYSAKLLAKEFKTAKNFIDQSLKLANNVTEIYEKLCN 579 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G A + +F+ N+ + L+ ++ ++ + + + N+ +VFTGT Sbjct: 580 IEGLGVKTADQLKQFFMVSANVNLITKLVNILTIQDWQYHGD-NLLLSNQTIVFTGTFAT 638 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R + + +LGA V +S TD+++VG+ G+KL+KAQQLG+KI+NEE+++ ++ + Sbjct: 639 VSRSEIKVQAEKLGAKVGTQVSNNTDLLVVGNKAGNKLQKAQQLGIKIINEEEWIKMVNE 698 >gi|109898096|ref|YP_661351.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c] gi|122972028|sp|Q15UZ1|DNLJ_PSEA6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|109700377|gb|ABG40297.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c] Length = 677 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 265/715 (37%), Positives = 409/715 (57%), Gaps = 53/715 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ALS Q ++ + E +Y YY P + D+EYD L R I + PDL RS Sbjct: 4 ALSPAQRLTQIINTINEYNYQ---YYVQDNPSVPDAEYDRLMRELLDIENNHPDL-RS-- 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P K+GG + +V H +P LSL+ ++ +D++ F RI + K + I F+ Sbjct: 58 PDSPSQKVGGAALSAFEQVEHEVPMLSLDNAFDEDDMQAFEKRIKD--RLKISSEISFSC 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189 EPK+DG ++I YE G+ V AA RGDG GE+++ +R I +P R+ N P +EVRG Sbjct: 116 EPKLDGLAVSILYENGQLVRAATRGDGRVGENITTNVRTIANVPLRLRGENFPSRLEVRG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---K 245 EV +++ F+ LN+ I G+KP+ NPRNAA+G LR+L+P R L F+ + LG Sbjct: 176 EVIMTRAGFVTLNEAQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVEN 235 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + L ++ G P++ + ++Y++++ +RS L YDIDG+V+K Sbjct: 236 EQQPLGETHSSRLAQLSEWGLPLSKELEVTQGATQCLTYFHKIGELRSQLSYDIDGVVFK 295 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD ++Q++LG AR+PRW I+HKF ++ + LLD++ Q+GRTG +TPVARLEP +GG Sbjct: 296 VDNIAMQQELGFVARAPRWAIAHKFPAQEEMSTLLDVEFQVGRTGAITPVARLEPTFVGG 355 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++NATLHN+D I L I++GD V+++RAG+VIP++V I+ ++R DA Sbjct: 356 VTVSNATLHNQDEINRL-----------GIKIGDSVIIRRAGDVIPQIVAIVADKRPDDA 404 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + FP CP+C S + + G+ VA RCTGGL C AQ+ E +KHF SR A +++G Sbjct: 405 KDIVFPESCPVCDSAIEK----LEGEAVA--RCTGGLYCKAQRKEAMKHFASRKALDVDG 458 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + ++ +E ++ PAD F L +S ++ G+ S NL +++ K Sbjct: 459 LGDKLIEQLVDAE----MVKSPADFFALDIAPLSSMERM------GEKSAVNLVNALEKS 508 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + +L +F++SLGIR VG A++LA+++L+ + Q D +L V VG Sbjct: 509 KKTTLAKFLYSLGIREVGEATAQNLAQHFLTLEAIEQA----------DLDALQAVSDVG 558 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQR 663 I+AQ + F++ N+ + ALL E + EK E + + V TGTL + R Sbjct: 559 VIVAQHVFNFFKEEHNLEVISALL-EAGVHWPKIEKLALDELPLAGQVYVLTGTLNVMDR 617 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + A+ + LGA VS +S KTD ++ G+ GSKL KAQ LGVK+MNE+ L + Sbjct: 618 NSAKAKLQSLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMNEDDMLAMF 672 >gi|225630391|ref|YP_002727182.1| DNA ligase [Wolbachia sp. wRi] gi|254782311|sp|C0R399|DNLJ_WOLWR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225592372|gb|ACN95391.1| DNA ligase [Wolbachia sp. wRi] Length = 662 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 279/694 (40%), Positives = 416/694 (59%), Gaps = 55/694 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L+ +I+YH+ Y+Q +KP I D+EYD LK++ +A P++ +++ +G + Sbjct: 11 LQDQINYHNVLYHQKNKPEISDAEYDELKKK---LAEIEPEIYATQE------SVGAPPD 61 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 KV H P LSLE ++ + + KF+++I RF ++ I EPKIDG + Y Sbjct: 62 ERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLI---EDKIEILCEPKIDGLSFSAIY 118 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 E G+FV AA RGDG GEDV+ + I P+ L + +EVRGE+YIS +DFL LN+ Sbjct: 119 EDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-GVQGRLEVRGEIYISNSDFLKLNE 177 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262 +ANPRNAA+G L++L+ +R L +F + L +E K Q E+L K+ Sbjct: 178 ------NDEFANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAE---KSQSEVLNKLE 228 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 LGF VN ++ G++ +YNE+ + R L YDIDG+VYKV++ LQ +LG ++P Sbjct: 229 ALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKAP 288 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 R +++KF+ A T+L I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK Sbjct: 289 RSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIK-- 346 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 +DIR GD V +KRAG+VIP++V++ + R P+ F FP CP C S+ V Sbjct: 347 ---------RKDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSK-V 396 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 R + + AA RC AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+ D Sbjct: 397 RQVEGE-----AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFY---DLGL 448 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +IP DIFTL+ R +E G+G S+ +L ++I RR I+L+RFIFSLGIR + Sbjct: 449 IKQIP-DIFTLEER--LDEFNLEEQSGWGKKSIAHLLNAIQSRRVITLDRFIFSLGIRFI 505 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G A LA YY+SY N+ N++I ++D+ L+ + +G +A+++ F+ NI Sbjct: 506 GQVAAELLADYYVSYDNW---YNSMIELSSDN-TELVGIDGIGKKVAESLESFFSKEHNI 561 Query: 623 CAVEALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 + L ++ P + +S + NK +VFTG L + R +A+ LGA VS+ Sbjct: 562 KMLNDLTACLQILPV---SSNSSNSVLNNKIIVFTGKLLAMSRGEAKVRAKTLGAKVSSH 618 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LS KTD +I G+ PGSK +KA +LGV+I++E+Q+ Sbjct: 619 LSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQW 652 >gi|257095174|ref|YP_003168815.1| NAD-dependent DNA ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047698|gb|ACV36886.1| DNA ligase, NAD-dependent [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 675 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 267/707 (37%), Positives = 398/707 (56%), Gaps = 48/707 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L SL EI +D YY P I D++YD L R A+ P+L + P ++ Sbjct: 5 ERLHSLRAEIERYDHEYYVLDAPSIADADYDRLFRELQALEAEHPELVSRDSPT---QRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG VTH+ LSL + +++ F R+ D + ++ EPK DG Sbjct: 62 GGAPLAEFAAVTHATAMLSLNNAFADDEVAAFDRRVREGLAT--DGEVDYSAEPKFDGLA 119 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 + + Y KG V A RGDG +GE+V+A +R + ++P R+ + + P +EVRGEV + ++D Sbjct: 120 VGLSYAKGILVCGATRGDGSTGENVTANLRTLRSVPLRLRASDWPAALEVRGEVLMWRSD 179 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL--GKTSEIFAKGQ 254 F LN G K + NPRNAA+G LR+L+P R L FF +G+ G+ + + A Sbjct: 180 FERLNARQREKGEKEFVNPRNAAAGGLRQLDPRITAQRPLRFFAYGIASGERAGLPATHS 239 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ Q R GFPV R+ G+++YY +M S R++LPYDIDG+VYK+D+ + Q++ Sbjct: 240 AQLDQLERW-GFPVARERRRVTGLAGLLAYYADMGSRRASLPYDIDGVVYKLDDLAAQER 298 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PR+ ++HKF ++A T LLDI IQ+GRTG LTPVARL PV +GG + NATLH Sbjct: 299 LGFLSRAPRFAVAHKFPAEEAVTELLDISIQVGRTGALTPVARLAPVFVGGVTVNNATLH 358 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED I+ +++R+GD V+V+RAG+VIP+VV ++ + R A+ F P+ C Sbjct: 359 NEDEIR-----------RKNVRIGDVVVVRRAGDVIPEVVRVVPDRRPAGAREFVMPTSC 407 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C SRVVR + A RC+GGL C AQ+ + L HF SR A +IEGLG + ++ Sbjct: 408 PVCGSRVVRSADE------AVARCSGGLYCPAQRKQALLHFASRRALDIEGLGDKLVEQL 461 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 S +R P D++ L S ++ D S NL +I + + +L RFI Sbjct: 462 VDSA----IVRTPGDLYRLGLLALASLERM------ADKSAGNLLAAIERSKRTTLARFI 511 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR+VG AR LA+++ S ++ ++A + D SL +VP VG +AQ+I + Sbjct: 512 FALGIRNVGEATARELARHFGS-------LDRLLAADED---SLRQVPDVGPTVAQSIRQ 561 Query: 615 FYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F P N+ +E L + S G + V TGTL + R A+ + Sbjct: 562 FCSEPHNLEVIEQLRAAGLVWSEGEPAVPAGGVFAGQVFVLTGTLPSLTREAAKAMIEAA 621 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +S+KT ++ G GSKLE+A QLGV++++E Q L LL+Q Sbjct: 622 GGKVSGSVSKKTSFVVAGAEAGSKLERALQLGVQVIDEGQLLGLLEQ 668 >gi|189184847|ref|YP_001938632.1| NAD-dependent DNA ligase LigA [Orientia tsutsugamushi str. Ikeda] gi|254781383|sp|B3CVK1|DNLJ_ORITI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189181618|dbj|BAG41398.1| DNA ligase [Orientia tsutsugamushi str. Ikeda] Length = 699 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 261/718 (36%), Positives = 422/718 (58%), Gaps = 32/718 (4%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I IE L+ + A+K + L E+ +D YY + P++ D++YD LK + I FP LA Sbjct: 9 INIEQLTSDHAKKIVDFLALELQKYDQAYYSDNNPLVTDAQYDVLKNLNNKIVAKFPHLA 68 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 D + K+G + KV H P LSL + +ED+ FIT+I F K D+ Sbjct: 69 LVNDHS---KKVGFTPSAQFSKVVHLKPMLSLANGFCVEDISNFITKIQNFL--KIDHCP 123 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 E KIDG RYE G A+ RGDG GE+++ ++ I + P+ L + ++ E Sbjct: 124 KIVCEYKIDGLSFNARYEYGVLTLASTRGDGQIGENITENLKTIQSFPQTLPIT-DKVFE 182 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGE+YI+ NDF LN + +G+ ++NPRNAA+G +R+L+P R L +FV+ LG+ Sbjct: 183 VRGEIYITNNDFRVLNIQQQKLGKALFSNPRNAAAGSIRQLDPAITAQRPLKYFVYALGE 242 Query: 246 -TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 T+ FA Q+E+LQK+ L F VN ++ H ++ +YN + + R+ L ++IDG+VY Sbjct: 243 VTNHHFASTQFELLQKLSQLKFSVNTDYILSDNLHSMIEFYNNVATERNNLAFEIDGVVY 302 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++F+LQ++LG + SPR+ I++KF T++ +I +Q+G+TG +TPVA L P+NI Sbjct: 303 KVNDFALQERLGATSTSPRFAIAYKFPALIGRTKITNITLQVGKTGAVTPVAWLIPINIA 362 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP- 423 G I+ ATLHN+ I+ +DIR+GD V + RAG+VIPK+ + ++ R Sbjct: 363 GVTISRATLHNKQEIE-----------SKDIRIGDYVFLHRAGDVIPKINGVDLSARDTQ 411 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 ++ F FP+ CP C +V + G+ VA RC LAC AQ ER+ HFVS+DA NI Sbjct: 412 SSERFIFPTTCPSCNQNLVVN----EGETVA--RCGNSLACQAQIYERICHFVSKDALNI 465 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ-TSTTKIENILGFGDVSVTNLYDSI 542 +GLGKQ++ F D + + I DIF L+ + + K+E+I G+G SV L+ +I Sbjct: 466 DGLGKQRIQFLL---DNKYIVNI-VDIFLLEENNKFLYSNKLEDIAGWGIKSVNKLFQNI 521 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 N+ +N+ L++FI++L I+HVG A+ LAK + + +NF + + + + + L + Sbjct: 522 NQAKNVILDKFIYALAIKHVGKYSAKLLAKEFKTAKNFINQSLKLANNATEIYEKLRNIE 581 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG A + +F+ N+ + L+ ++ ++ + + + N+ +VFTGT + Sbjct: 582 GVGVKTADQLKQFFMVSANVNLITKLVNILTIQDWQYHGD-NLLLSNQTIVFTGTFATVS 640 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + + +LGA V +S TD+++VG+ G+KL+KAQQLG+KI+NEE+++ ++ + Sbjct: 641 RSEIKVQAEKLGAKVGTQVSNNTDLLVVGNKAGNKLQKAQQLGIKIINEEEWIKMVNE 698 >gi|311278661|ref|YP_003940892.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1] gi|308747856|gb|ADO47608.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1] Length = 671 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 264/715 (36%), Positives = 414/715 (57%), Gaps = 52/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L++L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MEPIEQQLTALRATLRHHEYLYHVMDAPELPDAEYDRLMRELRELEAKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E + +V H IP LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAEPLGAFSQVRHEIPMLSLDNVFDEESFLAFNKRVQD--RLKSSDKLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED++A +R I IP ++ ++P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGLLVRAATRGDGTTGEDITANVRTIRAIPLKLRGDDVPARVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +NDE G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A L++ + G PV++ V N+ +++YY +++ R TL +DIDG+V KVD Sbjct: 236 PAS-HLGRLRQFKSWGLPVSSRVTLCNSPEEVLAYYRKVEEDRPTLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++ Sbjct: 295 ELQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIE 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A ++EG+G + Sbjct: 404 FPAHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVEGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + S Sbjct: 458 IIDQLVEKE----YVLTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKETS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA +Y S + +IA + DD L VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAHYGS-------LEALIAASIDD---LQTVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N ++ LL E +P + + E+ + S K +V TG+L + R Sbjct: 558 THVFNFFAEESNREVIQQLLAEGIHWPAPVVVKAEE-IDSPFAGKTVVLTGSLSLMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L LL + Sbjct: 617 AKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMLRLLGE 671 >gi|58696662|ref|ZP_00372215.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila simulans] gi|58537163|gb|EAL60267.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila simulans] Length = 656 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 279/694 (40%), Positives = 416/694 (59%), Gaps = 55/694 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L+ +I+YH+ Y+Q +KP I D+EYD LK++ +A P++ +++ +G + Sbjct: 5 LQDQINYHNVLYHQKNKPEISDAEYDELKKK---LAEIEPEIYATQE------SVGAPPD 55 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 KV H P LSLE ++ + + KF+++I RF ++ I EPKIDG + Y Sbjct: 56 ERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLI---EDKIEILCEPKIDGLSFSAIY 112 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 E G+FV AA RGDG GEDV+ + I P+ L + +EVRGE+YIS +DFL LN+ Sbjct: 113 EDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-GVQGRLEVRGEIYISNSDFLKLNE 171 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262 +ANPRNAA+G L++L+ +R L +F + L +E K Q E+L K+ Sbjct: 172 ------NDEFANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAE---KSQSEVLNKLE 222 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 LGF VN ++ G++ +YNE+ + R L YDIDG+VYKV++ LQ +LG ++P Sbjct: 223 ALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKAP 282 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 R +++KF+ A T+L I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK Sbjct: 283 RSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIK-- 340 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 +DIR GD V +KRAG+VIP++V++ + R P+ F FP CP C S+ V Sbjct: 341 ---------RKDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSK-V 390 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 R + + AA RC AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+ D Sbjct: 391 RQVEGE-----AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFY---DLGL 442 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +IP DIFTL+ R +E G+G S+ +L ++I RR I+L+RFIFSLGIR + Sbjct: 443 IKQIP-DIFTLEER--LDEFNLEEQSGWGKKSIAHLLNAIQSRRVITLDRFIFSLGIRFI 499 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G A LA YY+SY N+ N++I ++D+ L+ + +G +A+++ F+ NI Sbjct: 500 GQVAAELLADYYVSYDNW---YNSMIELSSDN-TELVGIDGIGKKVAESLESFFSKEHNI 555 Query: 623 CAVEALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 + L ++ P + +S + NK +VFTG L + R +A+ LGA VS+ Sbjct: 556 KMLNDLTACLQILPV---SSNSSNSVLNNKIIVFTGKLLAMSRGEAKVRAKTLGAKVSSH 612 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LS KTD +I G+ PGSK +KA +LGV+I++E+Q+ Sbjct: 613 LSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQW 646 >gi|322831833|ref|YP_004211860.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602] gi|321167034|gb|ADW72733.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602] Length = 673 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 261/714 (36%), Positives = 413/714 (57%), Gaps = 58/714 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++S L ++ +H+ Y+ P + D+EYD L R + A P+L ++ P ++ Sbjct: 6 EQISQLRTQLRHHEYQYHVLDAPEVPDAEYDRLMRELRELETAHPELVTADSPT---QRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +V H +P LSL+ +++ E F R+ + K ++ F E K+DG Sbjct: 63 GAAPLSAFEQVRHRVPMLSLDNVFDEESYLAFYKRVQD--RLKTAEALTFCCELKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G+ V AA RGDG +GE+++A +R I IP R+ NIPE +EVRGEV++ + Sbjct: 121 VSLLYENGELVQAATRGDGTTGENITANVRTIRAIPLRLHGDNIPERLEVRGEVFMPQAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQ 254 F A+NDE G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ + Sbjct: 181 FEAMNDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL-PRSH 239 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + LQ+ + G PV++ VR ++++Y ++++ R +L +DIDG+V K+D +Q+ Sbjct: 240 FARLQQFKAWGLPVSDRVRLCTGSEEVLAFYRQVEADRPSLGFDIDGVVVKIDSLDIQET 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW + KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++NATLH Sbjct: 300 LGFVARAPRWATAFKFPAQEQITLVKDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLH 359 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L +R+GD V+V+RAG+VIP+VV ++++ER DA+ FP+ C Sbjct: 360 NADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVLDERPEDAREVVFPTHC 408 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V R G+ VA RCT GL C AQ+ E LKHFVSR A +++G+G + +D Sbjct: 409 PVCHSDVER----VEGEAVA--RCTAGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E ++ PAD+F L + K+ + G S N+ ++ K + +L RF+ Sbjct: 463 VEKE----YVKTPADLFRL------TAGKLTGLDRMGPKSAQNVVRALEKAKETTLARFL 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG A +LA +Y S + A D SL V VGD++A+ +V Sbjct: 513 YALGIREVGEATAANLAAHYGSVE----------ALKAADIESLKGVQDVGDVVAKHVVN 562 Query: 615 FYQNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKIQRHKA 666 F N ++ LL SP I H + + S K +V TG+L + R A Sbjct: 563 FLSEEHNQQVIDELL---SPEINIHWPEVQVIVPEEIDSPFAGKTVVLTGSLSILSRDDA 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 620 KDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMIRLLGE 673 >gi|332284990|ref|YP_004416901.1| DNA ligase [Pusillimonas sp. T7-7] gi|330428943|gb|AEC20277.1| DNA ligase [Pusillimonas sp. T7-7] Length = 698 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 259/725 (35%), Positives = 397/725 (54%), Gaps = 63/725 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + +L EI+ H+ YY P++ D+ YD L + P+L P P Sbjct: 11 AAQRAETLRAEINEHNHRYYVQDAPVVSDAAYDKLMTELIELEQTHPELI---TPESPTQ 67 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEP 132 ++G E S V H++P SL ++ ED+ F R++ + + + E Sbjct: 68 RVGAEPLPSFDSVRHAVPMRSLGNAFDAEDIHAFSKRVFDTLHGAGMAGAEEKVQYVAEL 127 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K DG +++RYE+G+ V AA RGDG +GED+++ IR + ++P L + P+++EVRGEV Sbjct: 128 KFDGLAVSLRYEEGRLVRAATRGDGQTGEDITSNIRTLRSVPLKLKGDYPQVLEVRGEVL 187 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK------ 245 +++ DF LN A G K + NPRNAA+G LR+L+P R L F+ +G G+ Sbjct: 188 MNRQDFEKLNQAQQARGEKVFVNPRNAAAGSLRQLDPRITAKRPLRFYAYGWGEIRIVHD 247 Query: 246 -----------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 ++E+ K +ML ++ LG PVN+ + G++ +Y + S R+ Sbjct: 248 GQTELFRQESGSAEMPRKTHAQMLDWLQALGLPVNDSRKLVCGAQGLLDFYEHIGSTRTA 307 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LP+DIDG+VYKVD Q+ LG AR+PR+ I+HKF ++ +TRLL I++Q+GRTG +TP Sbjct: 308 LPFDIDGVVYKVDSLEAQEVLGYVARAPRFAIAHKFPAQEETTRLLSIEVQVGRTGAITP 367 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARLEPV +GG +TNATLHNED I+ +D+RVGD V+V+RAG+VIP+V+ Sbjct: 368 VARLEPVFVGGVTVTNATLHNEDEIR-----------RKDVRVGDTVVVRRAGDVIPEVL 416 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 +++ R PD F P CP+C S + R + A RCTGGL C+AQ+ + L H Sbjct: 417 APVLDLRPPDTSLFVMPRQCPVCGSAIERPEDE------AVSRCTGGLFCAAQRKQSLSH 470 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 R A +IEGLG++ +D S ++ AD+FTL + + ++ G S Sbjct: 471 AAGRKALDIEGLGEKLVDQLVDS----GRVKSLADLFTLTSDELAAYERM------GRKS 520 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 NL ++ K R SLER +++LGIRHVG AR LA+++ S ++ ++A D Sbjct: 521 ADNLVAALEKARTPSLERLLYALGIRHVGEATARDLARHFGS-------VDAVMAA---D 570 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLV 653 +L++V VG ++A +I+ F+ P N + L V S + K LV Sbjct: 571 ETALLQVHDVGQVVAASILNFFAEPHNRDVIAQLAAAGVHASAPEQASGSDLRLAGKTLV 630 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGT+ R +A + G VS +S+KT ++ G+ GSKL KA +LGV +++E+ Sbjct: 631 LTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYVVAGEEAGSKLTKAAELGVPVLDEDG 690 Query: 714 FLFLL 718 LL Sbjct: 691 LKALL 695 >gi|251788438|ref|YP_003003159.1| NAD-dependent DNA ligase LigA [Dickeya zeae Ech1591] gi|247537059|gb|ACT05680.1| DNA ligase, NAD-dependent [Dickeya zeae Ech1591] Length = 682 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 260/717 (36%), Positives = 411/717 (57%), Gaps = 56/717 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +++ AR+ + L I +HD Y+ P ILDSEYD LKR + P L S+ P Sbjct: 10 NVDTARRRIKELRILIRHHDIKYHSEDDPEILDSEYDLLKRELSELEIQHPFLVTSDSPT 69 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++G E ++ + H +P LSL+ ++N + + F R+ + K+D + F E Sbjct: 70 ---QRVGAEPLVAFGTIKHEVPMLSLDNVFNEDGFKAFSKRVSE--RLKNDKELIFCCEL 124 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG +++ YE G A+ RGDG +GE++++ +R I IP R+ NIP+ +EVRGEV Sbjct: 125 KLDGLAVSLLYENGILERASTRGDGTTGENITSNVRTIRAIPLRLEGDNIPQRLEVRGEV 184 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEI 249 ++ F ALN+E G K +ANPRNAA+G LR+L+P TR L F +G+G Sbjct: 185 FMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRVTATRPLTFLCYGVGLVEGGA 244 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ L + R G PV++ +R ++ +Y +++ R L +DIDG+V KV+E Sbjct: 245 LPDTHWQRLMQFRDWGLPVSDRIRLCTGSDAVLDFYRQVEQERGALGFDIDGVVIKVNEL 304 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG AR+PRW ++ KF ++ T L D++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 305 TLQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGVVVS 364 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +++GDRV V+RAG+VIP++V ++++ER DA+P Sbjct: 365 NATLHNADEIERL-----------GVQIGDRVAVRRAGDVIPQIVSVVLSERPADARPVV 413 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C+AQ+ E LKHFVSR A ++EG+G + Sbjct: 414 FPTHCPVCGSDVER----VEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVEGMGDK 467 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D E ++ PAD+ L T ++ G S NL +++NK ++ + Sbjct: 468 IIDQLVDKE----YVKTPADLLRLDIGILTRLDRM------GPKSAQNLVNALNKAKSTT 517 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA ++ + + A D +L +V VG ++A Sbjct: 518 FARFLYALGIRDVGEATAANLAAHFGTLE----------ALQAADLDALQQVQDVGIVVA 567 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--------VSSEIENKKLVFTGTLQKI 661 + F N ++ L+ + +G H + +S K +V TG+L + Sbjct: 568 THVRNFLDEAHNQQVIQELIGD---DVGLHWPDPVVVDVEASTSPFAGKTVVLTGSLSLL 624 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 625 SRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLTKAQELGIDVIDEAEMMRLL 681 >gi|330445331|ref|ZP_08308983.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489522|dbj|GAA03480.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 671 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 253/709 (35%), Positives = 410/709 (57%), Gaps = 49/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++EL +L +++ YH YY P I D+EYD + ++ I P+ + P+ + Sbjct: 6 QQELFTLREQLDYHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTVDSPS---QR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG +V H I LSL+ +N +DLR F R+ + + + + + EPK+DG Sbjct: 63 VGGTALEGFTQVKHEIAMLSLDNAFNDDDLRAFQKRLQD--RLRSGSELNYCCEPKLDGL 120 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ YE G V AA RGDG +GE+++ +R I IP ++ + P +EVRGEV++ K Sbjct: 121 AVSLMYENGVLVQAATRGDGATGENITHNVRTIRAIPLKLQGTDWPARLEVRGEVFMPKK 180 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQ 254 F ALN++ + G K +ANPRNAA+G LR+L+P TR L+F+ + +G A+ Q Sbjct: 181 GFEALNEKALKKGEKTFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVEGRELAETQ 240 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE L +++ G P+ +R+ ++ ++ Y+ + R +L Y+IDG+V KVD Q+Q Sbjct: 241 YERLCQLKAWGLPMCPEIRKVDSIEEVIVYHQSIGEKRQSLGYEIDGVVIKVDGIDTQQQ 300 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++NATLH Sbjct: 301 LGFVARAPRWAIAYKFPAQEEMTVLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH 360 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D ++ L + +GD V+++RAG+VIP++ ++ + R AQ FP+ C Sbjct: 361 NADEVERL-----------GVMIGDTVIIRRAGDVIPQIASVVESRRPESAQAIVFPTEC 409 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+CQS++ R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G G++ ++ Sbjct: 410 PVCQSKIER----IEGEAVA--RCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQL 463 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E + PAD+F S ++ + G S L D++ + +L RFI Sbjct: 464 VDRE----MVATPADLFKF------SAGEVTVLERMGPKSAQKLVDALKASKLTTLPRFI 513 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +SLGIR VG A +LA Y+ + + +Q LI VP VGD++A I Sbjct: 514 YSLGIREVGEATAANLANYFETLEAISQATKE----------QLIEVPDVGDVVAAHIFN 563 Query: 615 FYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F++ N+ V+ L+EV P I + E+ + +E K +V TG+L ++ R A+ + Sbjct: 564 FFREEHNMAVVKD-LQEVGIHWPEIEKPEEGIELPLEGKTVVLTGSLSQLTRSDAKAALQ 622 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +LGA V+ +S+KTD+++ G+ GSKL KAQ+L ++I +E++ + L+ + Sbjct: 623 KLGAKVTGSVSKKTDLLVAGEAAGSKLAKAQELDIEIWDEQKLVDLMSK 671 >gi|271501855|ref|YP_003334881.1| DNA ligase [Dickeya dadantii Ech586] gi|270345410|gb|ACZ78175.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech586] Length = 683 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 261/716 (36%), Positives = 407/716 (56%), Gaps = 56/716 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I ++ +L ++ YH+ Y+ P I D+EYD L + A P+L P+ Sbjct: 12 IAAVAAQVEALRAQLRYHEYKYHVEDAPEIPDAEYDTLMNTLKVLEQAHPELVT---PDS 68 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + V H +P LSL+ +++ F RI + K+D + F E K Sbjct: 69 PTQRVGAAPLDAFDTVAHDVPMLSLDNVFDEASFLAFCKRIND--RLKNDAELTFCCELK 126 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE+G V AA RGDG +GE+++A IR I IP R+ NIP +EVRGEV+ Sbjct: 127 LDGLAVSLLYEQGVLVRAATRGDGTTGENITANIRTIGAIPLRLHGDNIPTRLEVRGEVF 186 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIF 250 + F ALN+E G K +ANPRNAA+G LR+L+P TR L F +G+G Sbjct: 187 MKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTFLCYGVGLVEGGTL 246 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++ L + R G PV++ +R ++++Y +++ R TL +DIDG+V KV+E + Sbjct: 247 PDTHWQRLMQFRDWGLPVSDRIRLCTGSEAVLNFYRQVEQERETLGFDIDGVVIKVNELA 306 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW ++ KF ++ T L D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 307 LQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGVVVSN 366 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L I++GDRV V+RAG+VIP++V ++++ER DA+P F Sbjct: 367 ATLHNADEIERL-----------GIQIGDRVAVRRAGDVIPQIVSVVLSERPSDARPIVF 415 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R G+ V RCTGGL C+AQ+ E LKHFVSR A ++EG+G + Sbjct: 416 PEHCPVCGSELER----VEGEAVT--RCTGGLFCAAQRKEALKHFVSRRALDVEGMGDKI 469 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E ++ PAD+ L T ++ G S NL +++K ++ + Sbjct: 470 IDQLVEKE----YVKTPADLLRLDIGILTRLDRM------GPKSAQNLVSALDKAKSTTF 519 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + A D +L +VP VG ++A Sbjct: 520 ARFLYALGIRDVGEATAANLASHF----------GTLDALQAADLEALQQVPDVGIVVAT 569 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--------VSSEIENKKLVFTGTLQKIQ 662 + F N ++AL +S +G H + +S K +V TG+L ++ Sbjct: 570 HVRHFLDEAHNQQVIQAL---ISDEVGIHWPDPVRVDVEASTSPFAGKTVVLTGSLSQLS 626 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 627 RDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMMRLL 682 >gi|53803401|ref|YP_114852.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath] gi|81681278|sp|Q604U8|DNLJ_METCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|53757162|gb|AAU91453.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath] Length = 673 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 263/720 (36%), Positives = 403/720 (55%), Gaps = 60/720 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + A +E+ARK L +EI +H+ YY+ P+I D+EYD L AI +P+L Sbjct: 3 VPAEVVEKARK----LREEIEFHNVRYYRLDDPLITDAEYDRLMAELLAIEARYPELV-- 56 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P ++G + +V H +P LSLE ++ EDL F R+ + + +++ + Sbjct: 57 -TPDSPTQRVGAPPVEAFTEVRHEVPMLSLENAFSEEDLTAFDRRVRKELSR---DTLEY 112 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187 EPK+DG + + Y+ G V AA RGDG GEDV+ +RA+ IP R+ + P+ E Sbjct: 113 VAEPKLDGLAVNLLYQDGVLVRAATRGDGEVGEDVTHNVRAVRAIPLRLKGEDFPDRFEA 172 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGEV++ K FLALN+ G K + NPRNAA+G LR+L+ +R L+F+ +G+G Sbjct: 173 RGEVFMPKRGFLALNERARRSGEKTFVNPRNAAAGSLRQLDARVTASRPLSFYAYGIGAF 232 Query: 247 SEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + Q+E+L+ ++ G PV+ R G + YY + R LPYDIDG+VYK Sbjct: 233 PDARLPATQHELLESLQRWGLPVSPEYRVVRGAAGCLEYYRSLGERRHDLPYDIDGVVYK 292 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ Q LG +R+PRW I+HKF ++A TR++ ID+Q+GRTG+LTPVARLEPV +GG Sbjct: 293 VDDLKAQAGLGFVSRAPRWAIAHKFPAEEARTRVVGIDVQVGRTGVLTPVARLEPVFVGG 352 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +TNATLHN D I+ +D+R GD V+V+RAG+VIP++V ++ R P A Sbjct: 353 VTVTNATLHNADEIR-----------RKDVRPGDTVIVRRAGDVIPEIVRVVPELRKPGA 401 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +PF P CP C S V + G+++A RC+GGL C AQ E +KHF SR A +IEG Sbjct: 402 EPFRMPEVCPECGSAV----EAEPGEVLA--RCSGGLYCPAQHKESIKHFASRRAMDIEG 455 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + +D + I AD++ L ++ + G+ S NL ++ + Sbjct: 456 LGDKLVDQLVGRK----LIATVADLYRLD------LDRLAGLDRMGEKSAANLLAALERS 505 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + +L RF+++LGIR VG A+ L++++ S + + L+ V VG Sbjct: 506 KRTTLARFLYALGIRDVGEVTAKVLSEHFGSLEALMEATEE----------ELLAVADVG 555 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSS----EIENKKLVFTGTLQK 660 ++++ I F+ P N + LL + G EK + ++ V TGTL Sbjct: 556 PVVSRHIRLFFAQPHNREVISQLL-----ACGVSWEKPAPAPRKLPLQGLVFVLTGTLAS 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R +A+ + LGA + +SR T ++ G PGSKL+KA +LGV +++E+ FL LL++ Sbjct: 611 MSRDEARARLEALGAKCTGSVSRNTSFVVAGSEPGSKLDKASELGVPVLDEKGFLDLLER 670 >gi|302382738|ref|YP_003818561.1| DNA ligase, NAD-dependent [Brevundimonas subvibrioides ATCC 15264] gi|302193366|gb|ADL00938.1| DNA ligase, NAD-dependent [Brevundimonas subvibrioides ATCC 15264] Length = 777 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 287/760 (37%), Positives = 398/760 (52%), Gaps = 108/760 (14%) Query: 41 PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100 P + D++YDA+K R AI FP L RS+ P+ K+G ++ +V H +P LSL+ Sbjct: 42 PTVSDADYDAMKARNLAIETRFPALVRSDSPS---LKVGAPVSTQFTEVRHGVPMLSLDN 98 Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160 + D+ F+ RI RF D + FT EPKIDG +RYE G V A RGDG +G Sbjct: 99 AFEAADVTDFVARIRRFLNLPADEVVAFTAEPKIDGLSANLRYEDGVLVQGATRGDGRAG 158 Query: 161 EDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNA 219 ED++A ++ I IP R+ P IEVRGEVY + F A N E A GR+ YANPRN Sbjct: 159 EDITANLKTIADIPHRLNGKGWPARIEVRGEVYAPNDAFAAFNAEAEAAGRRTYANPRNF 218 Query: 220 ASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278 A+G LR+++PT R L FF + G+TSE FA+ Q L+ GFPVN + Sbjct: 219 AAGSLRQIDPTVTAARPLRFFAYAWGETSEPFAETQAGALEAFEAWGFPVNPRSVRVEGS 278 Query: 279 HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTR 338 G++ Y +++ R+ L YDIDG+VYKVD Q +LG +RSPRW I+HKF +QA+T Sbjct: 279 DGLIDVYRGLETDRAGLGYDIDGVVYKVDRLDWQTRLGFVSRSPRWAIAHKFPAQQATTV 338 Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398 L IDIQ+GRTG LTPVARL PV +GG ++ NATLHNED I +D+R+G Sbjct: 339 LEGIDIQVGRTGSLTPVARLAPVTVGGVVVRNATLHNEDEI-----------ARKDVRIG 387 Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458 D V+++RAG+VIP++V +++++R DA P+ FP+ CP+C S VR+ + RC Sbjct: 388 DTVVLQRAGDVIPQIVSVVLDKRPADALPYVFPTHCPVCGSEAVREGDD------VRRRC 441 Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQR-RQ 517 TGGL CSAQ +ERLKHFVSR AF+IEGLG++QL F D + I PADIF L R Sbjct: 442 TGGLICSAQLIERLKHFVSRRAFDIEGLGEKQLSAF---HDRGW-IHEPADIFRLARDAD 497 Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577 + + E+ G+G+ SV NL I+ RR ISLER IF LGIR +G + + LA+++ + Sbjct: 498 KLDALRAED--GYGETSVRNLVAGIDARRVISLERLIFGLGIRDIGDQTSLLLARHFGDW 555 Query: 578 QNF-AQEINNIIAHNNDDWLSLIR----VPLVGDIIAQA--------------------- 611 +F A + + +W L P ++A A Sbjct: 556 ASFHAAAMEAASGIPSPEWTQLAEGHGVSPRTLSVMAAATLSPADPWPEAPIDQKLALAF 615 Query: 612 --------------------IVEFYQ-----NPRNICAVEALLKEVSPSIGRHEKNVSSE 646 IVE + P A + V P R + E Sbjct: 616 PGIAAPARRALGPLAVDWAGIVELARIAREDGPSMTLGEIAGIAGVGPVAARAVADFFHE 675 Query: 647 IENKKLVFT-----GTLQKIQRHKAQEYVTQLGAVVSAILSR------------------ 683 N+ +V T+Q +R K+ VT V + L R Sbjct: 676 PHNQAVVAALLAELTTVQDAERPKSDTAVTGKTVVFTGALERFTRDEAKARAESLGAKVS 735 Query: 684 -----KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 KTD ++ G GSKL AQ+ GV ++ E+++L L+ Sbjct: 736 GSVSKKTDYLVAGPGAGSKLADAQKHGVAVLTEDEWLALI 775 >gi|322513636|ref|ZP_08066733.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976] gi|322120561|gb|EFX92462.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976] Length = 681 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 262/710 (36%), Positives = 415/710 (58%), Gaps = 58/710 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L +L Q++ ++ Y+ P++ D+EYD L + P+ ++ P ++G Sbjct: 17 QLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH IP LSL+ ++ EDL F+ R+ + ++ S+ F EPK+DG + Sbjct: 74 AKPLDGFAQVTHEIPMLSLDNAFSDEDLDSFLRRMESYI-SENPLSLAFCCEPKLDGLAV 132 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED+++ IR I IP L++ N P +EVRGEV++ + F Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254 LN+ + K +ANPRNAA+G LR+L+P ITR LN + G+ ++ + Sbjct: 193 EELNERALEKSEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPATH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLVTGHEQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAEKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR G+ VA RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVR----VEGEAVA--RCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E + PAD+F L T+ +++ + G S N +SI K +N +L RF+ Sbjct: 475 MDRE----LVHTPADLFKL---DHTTLMRLDRM---GKKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ +N+ A + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHF----------HNLEAIRMATFEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQE 668 F+Q P N+ VE L+ + G + ++V + ++ K +V TGTL ++ R +A+ Sbjct: 575 FWQEPHNVAVVEDLIAQ-----GVYWQDVVQVEIADNPLKGKNVVLTGTLTQLTRDQAKA 629 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++ + L+ Sbjct: 630 LLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQELVDLM 679 >gi|317049042|ref|YP_004116690.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b] gi|316950659|gb|ADU70134.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b] Length = 672 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 259/717 (36%), Positives = 419/717 (58%), Gaps = 59/717 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++++++L + +H+ Y+ P + D+EYD L + + A P+L P+ Sbjct: 1 MKSVQEQITALRTTLRHHEYLYHVMDTPEVPDAEYDRLMAQLRELESAHPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ ++ F R+ + DD + + E K Sbjct: 58 PTQRVGAAPLAAFEQVRHEVPMLSLDNTFDEAGFLAFNKRVQDRLKSSDD--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++A +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGLLVSAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 ++++ F LN++ G K +ANPRNAA+G LR+L+P R L FF +GLG + E+ Sbjct: 176 MTESGFEKLNEDARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A LQ+ + G PV++ +R AN ++++Y E++ R TL +DIDG+V KVD Sbjct: 236 PAS-HLGRLQQFKAWGLPVSDRIRLANNADDVLAFYREVEEARPTLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVVVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER D + Sbjct: 355 NATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPEDTREIV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FPS CP+C S V R G+ V RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPSHCPVCGSDVER----VEGEAVT--RCTGGLICGAQRKEALKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E ++ PAD+F L + K+ + G S N+ D++ K + + Sbjct: 458 IIDQLVEKE----YVKTPADLFRL------TAGKLTGLDRMGPKSAQNVVDALEKAKFTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF+++LGIR VG A +LA ++ E+ ++ + D +LI V VG ++A Sbjct: 508 LPRFLYALGIREVGEATAANLANHF-------GELEKVM---DADLDALIAVQDVGQVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIEN----KKLVFTGTLQKI 661 + F N +++E++ +G H V ++EI++ K +V TG+L ++ Sbjct: 558 SHVRNFMDEESN----REVIRELTQEMGVHWPQVEVVNAAEIDSPFAGKTVVLTGSLSQM 613 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 NRDDAKARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 670 >gi|292491548|ref|YP_003526987.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4] gi|291580143|gb|ADE14600.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4] Length = 675 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 264/710 (37%), Positives = 402/710 (56%), Gaps = 49/710 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QAR+ + +L + I+ ++ YY P++ DSEYD L R + +P+L P+ P Sbjct: 6 QARERVETLRKLINDYNYNYYVLDSPVVPDSEYDRLMRELQNLEAQYPELVV---PDSPT 62 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G E +L +V H IP LSL ++ E+L F R+ ++ + + EPK+D Sbjct: 63 QRVGAEPLKALGEVKHEIPMLSLNNAFSEEELADFHRRVK---ERLGIEQVEYAAEPKLD 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194 G +++ Y++G V A RGDG +GEDV+ +R IPT+ L + IP ++EVRGEVY+ Sbjct: 120 GLAVSLLYQEGILVQGATRGDGVTGEDVTHNVRTIPTVSLHLRGDKIPSLLEVRGEVYMP 179 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAK 252 K F LN E +A G K + NPRNAA+G LR+L+P +R L F +G+GK + + Sbjct: 180 KEGFERLNREHLAKGEKTFVNPRNAAAGSLRQLDPRIAASRPLAIFCYGVGKVEQGTLPQ 239 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E+L +++ G V G YY + R LPY+IDG+V+KVD F + Sbjct: 240 RHSEVLARLKQWGLRTPPHVEVVAGLAGCQEYYQRLLERRDGLPYEIDGVVFKVDRFDQR 299 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG AR+PRW I++KF ++ T++LDI++Q+GRTG LTPVARL+PV +GG ++NAT Sbjct: 300 QALGFVARAPRWAIAYKFPAQEELTQILDIEVQVGRTGALTPVARLQPVFVGGVTVSNAT 359 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I+ +D+R+GD V V+RAG+VIP+VV +I++ R PDA+ F P+ Sbjct: 360 LHNEDEIR-----------RKDVRIGDTVYVRRAGDVIPEVVKVILDHRPPDARFFQMPT 408 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CPIC S V++D G +A RC+GGL C AQ+ E +KHF SR A +I GLG + +D Sbjct: 409 QCPICGSEVIKD----EGGAIA--RCSGGLYCPAQRKEAIKHFASRRAMDINGLGDKLVD 462 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + E + AD++ L Q ++ G S NL +I ++ +L R Sbjct: 463 QLIERE----LVEDVADLYHLTAEQLAGLERM------GQKSAANLMHAIEASKHTTLPR 512 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG A++L A+E N++ A L V +G ++A I Sbjct: 513 FLYALGIREVGEATAQAL----------AEEFNSLEALEGASEERLQEVTDIGPVVATHI 562 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F++ P N ++ L+E E K + + K V TGTL+ + R +A+E + Sbjct: 563 AAFFRQPHNRQVIQR-LREAGVCWPEKEGKKPIPQPLSGKTFVLTGTLESMTREQAKERL 621 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LG V++ +S TD ++VG NPGSKL KA+ L + +++E F LL + Sbjct: 622 QALGGKVTSSVSSNTDYLVVGTNPGSKLTKAKDLHITLLDEGNFRNLLDE 671 >gi|42520616|ref|NP_966531.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila melanogaster] gi|81652444|sp|Q73H01|DNLJ_WOLPM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|42410355|gb|AAS14465.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila melanogaster] Length = 662 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 278/694 (40%), Positives = 411/694 (59%), Gaps = 55/694 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L+ +I+YH+ Y+Q +KP I D+EYD LK++ +A P++ ++D +G + Sbjct: 11 LQDQINYHNVLYHQKNKPEISDAEYDELKKK---LAEIEPEIYATQDS------VGAPPD 61 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 KV H P LSLE ++ + + KF+++I RF ++ I EPKIDG + Y Sbjct: 62 ERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLI---EDKIEILCEPKIDGLSFSAIY 118 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 E G+FV AA RGDG GEDV+ + I P+ L + +EVRGE+YIS +DFL LN+ Sbjct: 119 EDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-GVQGRLEVRGEIYISNSDFLKLNE 177 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262 +ANPRNAA+G L++L+ +R L +F + L +E K Q E+L K+ Sbjct: 178 ------NDEFANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAE---KSQSEVLNKLE 228 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 LGF VN ++ G++ +YNE+ + R L YDIDG+VYKV++ LQ +LG ++P Sbjct: 229 ALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKAP 288 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 R +++KF+ A T+L I IQ+GRTG+LTPVA L PVN+GG L++ A+LHN+D IK Sbjct: 289 RSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNVGGVLVSRASLHNQDEIK-- 346 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 +DIR GD V +KRAG+VIP++V++ + R P+ F FP CP C S+ V Sbjct: 347 ---------RKDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSK-V 396 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 R + + AA RC AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+ D Sbjct: 397 RQVEGE-----AAVRCPEEFACKAQMIEKLKHFVSKDAFDIVGLGDKQIEFFY---DLGL 448 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 I+ DIFTL+ R +E G+G+ S+ NL +SI RR I+L+RFIFSLGIR + Sbjct: 449 -IKQIHDIFTLEER--LDEFNLEEQSGWGEKSIANLLNSIQSRRVITLDRFIFSLGIRFI 505 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G A LA YY+SY N+ + + N + L+ + +G A+++ F+ NI Sbjct: 506 GQVAAELLADYYVSYNNWYNSMIELSLDNTE----LVGIDGIGKKGAESLESFFSKEHNI 561 Query: 623 CAVEALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 + L ++ P + +S + NK +VFTG L + R +A+ LGA VS+ Sbjct: 562 KMLNDLTACLQILPV---SSNSSNSVLNNKIIVFTGKLLAMSRGEAKVRAKTLGAKVSSH 618 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LS KTD +I G+ PGSK +KA +LGV+I++E+Q+ Sbjct: 619 LSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQW 652 >gi|254420802|ref|ZP_05034526.1| DNA ligase, NAD-dependent [Brevundimonas sp. BAL3] gi|196186979|gb|EDX81955.1| DNA ligase, NAD-dependent [Brevundimonas sp. BAL3] Length = 776 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 262/595 (44%), Positives = 363/595 (61%), Gaps = 31/595 (5%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E L+ E A +EL+ L E++ HD Y + P I D++YDAL+ R AI AFPDL R Sbjct: 10 PVEDLTAETAAEELAWLAAEMARHD-ALYNEATPEISDADYDALRARNLAIETAFPDLVR 68 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P +K+G ++ +V H +P LSL+ ++ ++R F+ RI RF + D I Sbjct: 69 ---PDSPSHKVGAAVSSQFAEVRHGVPMLSLDNAFDEGEVRDFVARIARFLKLPSDEPIA 125 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 F EPKIDG + Y G+ A RGDG +GEDV+A + I + + L+ + P+ IE Sbjct: 126 FVAEPKIDGLSANLLYVDGRLTLGATRGDGRTGEDVTANLNTIADVKQTLAGDDWPDRIE 185 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244 +RGEVY F A N A GR+ YANPRN A+G LR+ + IT R LNFF + G Sbjct: 186 IRGEVYAPNAAFAAFNAAAEAEGRRTYANPRNFAAGSLRQKD-ARITGKRPLNFFAYAWG 244 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S FA+ Q+E LQK++ GFPVN R+ G+++ Y E++ R+TL YDIDG+VY Sbjct: 245 EHSSDFAETQWEALQKLKAWGFPVNARSRRVEGAEGLIAVYRELERDRATLGYDIDGVVY 304 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD Q++LG ARSPRW I+HKF +QA+T L IDIQ+GRTG LTPVARL PV +G Sbjct: 305 KVDRLDWQRRLGFVARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHPVTVG 364 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ NATLHNED I+ L D+R+GD V ++RAG+VIP+++ ++ + R D Sbjct: 365 GVVVRNATLHNEDEIERL-----------DVRIGDTVRLQRAGDVIPQILGVVPDLRPAD 413 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A P+ FP CP+C S VR+ G V RCTGGL C AQ +ERLKHFV R AF+IE Sbjct: 414 AVPYVFPDKCPVCGSEAVRE-----GDEV-KRRCTGGLICDAQIVERLKHFVGRRAFDIE 467 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++QL F + I+ PADIF L R + ++E G+G+ S+ NL I+ Sbjct: 468 GLGEKQLAAF----NARGWIKEPADIFRLA-RDEARLKELEREDGYGETSIRNLVAGIDA 522 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSL 598 RR ISL+RF+F LGIR +G + + LA+ + S+ A + +D W +L Sbjct: 523 RRVISLDRFLFGLGIRDIGEQTSIVLARAFESWPALKAACLQAASGVPSDAWTAL 577 Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 67/115 (58%) Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 VG + A A+ F+ P N+ V AL E++ + + + K +VFTG L++ R Sbjct: 661 VGPVAALALAHFFHEPHNLQVVAALEAELTQILDAERPKSDTPVAGKTVVFTGALERFTR 720 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ LGA VS +S+KTD ++ G GSKL+ A++ GV+++ E+++L L+ Sbjct: 721 DEAKARAESLGAKVSGSVSKKTDYLVAGPGAGSKLKDAEKHGVQVLTEDEWLALI 775 >gi|329848744|ref|ZP_08263772.1| DNA ligase, NAD-dependent [Asticcacaulis biprosthecum C19] gi|328843807|gb|EGF93376.1| DNA ligase, NAD-dependent [Asticcacaulis biprosthecum C19] Length = 714 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 278/734 (37%), Positives = 417/734 (56%), Gaps = 48/734 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++++ AR S L ++ YH YY+ P + D++YDAL+++ + FPDL SE P Sbjct: 1 MTLDDARALHSELAAQVQYHRGLYYREETPELTDADYDALEKQLRDLEAQFPDLKTSESP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 +G ++ V H +P LSL+ + ED+ F RI RF + + + F E Sbjct: 61 T---QTVGAVISEKFSPVVHGVPMLSLDNAFADEDVTDFEDRIRRFLKLPAEEPVVFAAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGE 190 PKIDG ++ Y G+ V A RGDG +GEDV+ IR I IP LS PE IE+RGE Sbjct: 118 PKIDGLSCSLLYVNGELVRGATRGDGRTGEDVTENIRTIADIPHRLSGTGHPERIEIRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 +Y+ F +N + A G + YANPRN ASG LR+L+ T +T R L FF + G+ S+ Sbjct: 178 IYVPLQAFADMNAKAQAEGGRTYANPRNFASGSLRQLD-TAVTAARPLRFFAYTWGEVSD 236 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 FA Q E L K R G VN Q + G++ YN + RS L YDIDG+VYKVD Sbjct: 237 DGFAATQTEALAKFREWGLQVNPQSAQVDGAAGLLDVYNRIGRDRSGLGYDIDGVVYKVD 296 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q++LG +RSPRW I+HKF +QA TRL IDIQ+GR G +TPVARL+PVN+GG + Sbjct: 297 RLDWQRRLGFVSRSPRWAIAHKFPAQQALTRLAAIDIQVGRMGTMTPVARLQPVNVGGVV 356 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TN TLHN D I+ +DIR+GD V V+RAG+VIP++V I +ER A P Sbjct: 357 VTNVTLHNADEIE-----------RKDIRIGDMVRVQRAGDVIPQIVGIEPDERPDTAVP 405 Query: 428 FSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + FP+ CP ++ VVR+ N G A +C+G AC Q+ E LK+ VSR +IEGL Sbjct: 406 YEFPTVCPCPLKTEVVREQN-AAGTEGVARKCSGDQACPHQRTEYLKYVVSRRVLDIEGL 464 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQR-------------------RQQTSTTKIENI 527 G+ ++ F + + PADI+ L RQ+ S ++ Sbjct: 465 GETYIEIFNR----GGILAEPADIYRLHEKAEAAKVIVLEERKRQSAARQEKSGQAVKKQ 520 Query: 528 LGFGDVSVTN---LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + D + T+ L+ +I+ RR++ LERFI +LGI+HVG A+ LA+ ++S + F + Sbjct: 521 VADTDRAFTDLDKLFAAIDIRRDLPLERFIAALGIKHVGDTTAKLLARAFVSERAFHDTL 580 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + + + S+ + VG +IA+++ ++ +P E +++V + + Sbjct: 581 VKAAEGDEEAFNSVKDLNQVGPVIARSVTSYFAHPYQRGIYERFIEQVRVQDAEAVAS-T 639 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 S + K +VFTGTL+K+ R +A+ +LGA VS +S+KTD+++ G GSKL+ A +L Sbjct: 640 SPVSGKTVVFTGTLEKLTRDEAKAQAERLGAKVSGSVSKKTDLVVAGPGAGSKLKTAAEL 699 Query: 705 GVKIMNEEQFLFLL 718 G++++ E+++L L+ Sbjct: 700 GIQVLTEDEWLSLI 713 >gi|33151983|ref|NP_873336.1| NAD-dependent DNA ligase LigA [Haemophilus ducreyi 35000HP] gi|81423646|sp|Q7VMX7|DNLJ_HAEDU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33148205|gb|AAP95725.1| DNA ligase [Haemophilus ducreyi 35000HP] Length = 686 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 263/713 (36%), Positives = 415/713 (58%), Gaps = 59/713 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L +L ++ ++ Y+ + P++ D+EYD L + I +P+L P+ P ++G Sbjct: 17 QLEALRDQLREYEYHYHVLNNPLVPDAEYDRLINQLKNIEQQYPELI---TPDSPTQRVG 73 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +V H +P LSL+ ++ DL F+ RI + D N + F EPK+DG + Sbjct: 74 AKPLAGFAQVAHEMPMLSLDNAFSETDLDNFLRRIENYL-SLDANQLTFCCEPKLDGLAV 132 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GE+++A +R I IP L + N P +E+RGE+++ F Sbjct: 133 SILYIDGVLQLAATRGDGTTGENITANVRTIRNIPLKLKMANPPHRLEIRGEIFMPLKGF 192 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAK---G 253 ALN +A G K +ANPRNAA+G LR+L+P ITR L +G+G + + Sbjct: 193 NALNQRALAKGEKSFANPRNAAAGSLRQLDP-QITRQRPLMLNAYGIGVYESNYQRLPTS 251 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y L+ ++ +G PVN +R A + ++++Y ++++ R+ L YDIDG V KVD+ ++Q+ Sbjct: 252 HYARLEWLKSIGIPVNAEIRLARGYPQLLAFYADIQAKRADLGYDIDGTVLKVDDITIQE 311 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEP + G ++NATL Sbjct: 312 TLGFISRSPRWAIAYKFPAQEEMTILKDVEFQVGRTGAITPVAKLEPTLVAGVTVSNATL 371 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L + +GD V+++RAG+VIP+++ I+ + R +A+ FP+ Sbjct: 372 HNGDEIERL-----------GVAIGDTVIIRRAGDVIPQIIGIVADRRPANAKKIVFPTA 420 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S V+R G+ VA RCTGGL C AQ+ E LKHFVSR A NI+G+G++ ++ Sbjct: 421 CPVCHSAVIR----IAGEAVA--RCTGGLFCPAQRKEALKHFVSRKAMNIDGVGEKLIEQ 474 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E I PAD+F L S ++E + G+ S N +SI K ++ +L RF Sbjct: 475 LMARE----LIHTPADLFKL---DPLSLMRLERM---GEKSAQNALNSIEKAKHTTLARF 524 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +FSLGIR VG A +LA ++ S +N I N + L V VG+++A +V Sbjct: 525 LFSLGIRDVGETTALNLANHFGSLEN--------IRTANVEQLK--EVQDVGEVVANRLV 574 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQ 667 F+Q N+ VE L+ + G H N+ + +++K +V TGTL + R +A+ Sbjct: 575 CFWQEQHNVAVVEELIAQ-----GVHWDNIVQLEIADNPLKDKNVVLTGTLTQFSRDQAR 629 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + QLG VS+ +S KTD +I G+ G+KL KA+QLG++I++E F L++Q Sbjct: 630 KLLQQLGCKVSSAVSTKTDFLIAGEKAGTKLTKAEQLGIRILDEHAFADLIKQ 682 >gi|113868039|ref|YP_726528.1| NAD-dependent DNA ligase [Ralstonia eutropha H16] gi|123133949|sp|Q0KA11|DNLJ_RALEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|113526815|emb|CAJ93160.1| NAD-dependent DNA ligase [Ralstonia eutropha H16] Length = 709 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 260/718 (36%), Positives = 393/718 (54%), Gaps = 54/718 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P L E A K ++ L E+ H+ YY P I D+EYDAL A+ P+L Sbjct: 15 PAGPLPPEAAAKRVAWLRDELDRHNYQYYVLDAPTIPDAEYDALFSELQALELEHPEL-- 72 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR----IYRFWQKKDD 123 + P+ P ++GGE + V H +P LSL + +D+ F R + R + Sbjct: 73 -QTPDSPTQRVGGEPLSAFDSVRHRVPMLSLNNGFADDDVLNFDRRCAQGLGRTAPAAGE 131 Query: 124 NSIF-------FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176 +F + E K DG +++RYE G+ V AA RGDG +GEDV+ +R I IP Sbjct: 132 QDLFSAADAVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLK 191 Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRY 235 L P ++EVRGEV++ + DF LN+ G K + NPRNAA+G LR+L+P R Sbjct: 192 LRGQAPAVLEVRGEVFMYRGDFDKLNERQAEAGEKTFVNPRNAAAGSLRQLDPRITAKRP 251 Query: 236 LNFFVHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L+FF +GLG+ + + ML LG PV G++ +Y ++ R Sbjct: 252 LSFFAYGLGELQGVDRPPTHSAMLDGFAALGLPVCKDRAVVKGAQGLLDFYRDIGQRRDA 311 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LPYDIDG+VYKV+ + Q++LG +R+PR+ ++HKF ++ +T + DI++Q+GRTG +TP Sbjct: 312 LPYDIDGVVYKVNALAEQERLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITP 371 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +TNATLHNED I+ +D+ +GD V+V+RAG+VIP+VV Sbjct: 372 VARLKPVFVGGVTVTNATLHNEDEIR-----------RKDVHIGDTVIVRRAGDVIPEVV 420 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 ++ R DA+ F P+ CP+C S + + + A RCTGGL C+AQ+ + L H Sbjct: 421 AVVTERRPDDARAFVMPTACPVCGSHIEKLEDE------AIARCTGGLICAAQRKQALLH 474 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F R A +IEGLG + ++ +R PAD+F L K+ + D S Sbjct: 475 FAQRRAMDIEGLGDKLVEQLVDQG----IVRTPADLFKL------GVAKLAALERMADKS 524 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 NL +I+ R ++ RFIF+LGIRHVG A+ LA+++ +++ ++A D Sbjct: 525 AANLVAAIDASRETTMNRFIFALGIRHVGEATAKDLARHF-------GKLDALMAA---D 574 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLV 653 +L+ V VG ++AQ+I F+ P N+ +E L V + + + K V Sbjct: 575 EAALLEVNDVGPVVAQSIAHFFAEPHNVEVIEQLRAAGVHWTESEPVAKAPAPLSGKTFV 634 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 TGTL + R A+E + GA V+ +S+KTD ++ G GSKL+KA+ LGV +++E Sbjct: 635 LTGTLPTMSREDAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDE 692 >gi|108759370|ref|YP_633776.1| NAD-dependent DNA ligase [Myxococcus xanthus DK 1622] gi|123074067|sp|Q1D0P7|DNLJ_MYXXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|108463250|gb|ABF88435.1| DNA ligase, NAD-dependent [Myxococcus xanthus DK 1622] Length = 672 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 259/714 (36%), Positives = 407/714 (57%), Gaps = 58/714 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 ++A L +E+++H+ YY P + D++YD L R + P L + P+ P Sbjct: 5 QKAAARARELHRELAHHNYRYYVLDSPEVSDAQYDKLMRELQDLEAKHPSL---QTPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG +V H P +SL I+ + L +F RI + I + EPK+ Sbjct: 62 TQRVGGAAAEEFGEVVHRAPMISLANIFEDQGLTEFDERIRKLVGLP---GIAYVCEPKL 118 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGE 190 DG I +RYEKG FV A RGDG +GEDV++ +R I ++P L + +P+++EVRGE Sbjct: 119 DGLAIALRYEKGAFVQGATRGDGTTGEDVTSNLRTIRSLPMSLFPQDDVKVPDVLEVRGE 178 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL--GKTS 247 V+I K DF LN++ G +ANPRNAA+G LR+L+P R L+ F++ G+ Sbjct: 179 VFIRKKDFQKLNEKREEEGEPLFANPRNAAAGSLRQLDPRMTAARPLSVFLYECVPGEGV 238 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 +F K E L+ ++ LG P+N R+A G+ Y+ R LP+++DG+V KVD Sbjct: 239 PVF-KTHIEKLEYLKTLGLPINQ-YRRAEGLEGVRQAYDASLKGRHELPFEVDGMVVKVD 296 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +K+LG+ ++SPRW +++KF ++ ST ++DI IQ+GRTG LTPVA L+PV +GG Sbjct: 297 DEDQRKRLGQVSKSPRWAVAYKFPPEEESTEVMDIGIQVGRTGALTPVAHLKPVKVGGVT 356 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHNED ++ +D+R GD V V+RAG+VIP++V +++++R D+ P Sbjct: 357 VARATLHNEDELR-----------RKDVRKGDTVFVRRAGDVIPEIVSVVLSKRPADSAP 405 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C + +D + G ++ RCTG +C AQ +E+++HF SR A +IEGLG Sbjct: 406 FEFPKHCPVCDAVATKD---EDGAII---RCTGA-SCPAQLVEKIRHFASRLAMDIEGLG 458 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + ++ AD++ L + + ++ GD S NL S+ + + Sbjct: 459 DKLAAQLVST----GRVKAFADLYALTKEDLLTLERM------GDKSADNLIASLERSKQ 508 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF++SLGIRHVG A++LA+ + S F + +I RV VG Sbjct: 509 TTQRRFLYSLGIRHVGDATAKALAEAFPRSEMLFEASLEDI-----------SRVKDVGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+AQ I F+Q P+N A+ ALL V P+ + K +V TG + + R + Sbjct: 558 IMAQVIHTFFQEPQNQEAIRALLAAGVQPAA--PQVATGGPFVGKSVVLTGAMTGMTREQ 615 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E V + G V+ +SRKTD ++ G++ GSKL+KAQ+LGV+I++E+ FL +LQ Sbjct: 616 AKEEVERRGGKVAGSVSRKTDFVVAGEDAGSKLKKAQELGVRILDEQAFLQMLQ 669 >gi|167627564|ref|YP_001678064.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|190359258|sp|B0TY02|DNLJ_FRAP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167597565|gb|ABZ87563.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 678 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 270/719 (37%), Positives = 410/719 (57%), Gaps = 56/719 (7%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I + L+ Q + + L + + Y+ KP+I DS+YD L R + P L Sbjct: 9 IDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDLVDDNPQLK 68 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 S N L+++GGE+ + H SL ++++E+LR F +I + I Sbjct: 69 PS---NSVLDRVGGEILAGFETIKHKKKMTSLANVFSLEELRDFYDKI--------EYDI 117 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185 EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P L+ N PE + Sbjct: 118 ELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEEL 177 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244 EVRGE+ + K FL+LN+ M K +ANPRNAA+G +R L+ + R L + +G+G Sbjct: 178 EVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIG 237 Query: 245 KTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 S+ F + Q+E++ ++ GF +++ + A F + Y+++M R+ L YDIDGL Sbjct: 238 YFSKDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGL 297 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V+KV+ LQ +G AR P+W I++KF ++ + +L+++ Q+GRTG +TPVARL+PV Sbjct: 298 VFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVA 357 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG +++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV + R Sbjct: 358 VGGVIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVVKSLPQYRK 406 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 PDAQ P+ CP+C S + ++N + A +RCTGG C AQ ERLKHFVSR A + Sbjct: 407 PDAQMVEMPTNCPVCDS-AIENINDQ-----AIYRCTGGWHCQAQTTERLKHFVSRKAMD 460 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+ LG + ++ ++ I+ PADI+ L Q T ++ G S N+ DSI Sbjct: 461 IDKLGAKLIEQLVAAD----LIKYPADIYKLNFEQLTGLERM------GAKSSQNVLDSI 510 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K + SL RFIF++GI+ VG + +LA ++ S ++F + + LI + Sbjct: 511 TKSKEPSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------KFEQLIEIN 560 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQ 659 +G+IIA+ IV F+Q+ NI V+ LL S +I EK + E NK +V TGT + Sbjct: 561 DIGEIIAKNIVSFWQDSLNIQIVDELLGN-SINIQNPEKIEQAHNESFTNKTIVITGTFE 619 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + +GA V++ +S+KTD++I GDN GSKL KAQ LGV+++ EE LL Sbjct: 620 NYNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTKAQDLGVEVIFEEDLQNLL 678 >gi|307132386|ref|YP_003884402.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937] gi|306529915|gb|ADM99845.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937] Length = 683 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 260/710 (36%), Positives = 406/710 (57%), Gaps = 56/710 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ +L ++ YH+ Y+ P I D+EYD L + A P+L P+ P ++G Sbjct: 18 QIEALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKTLEQAHPELV---TPDSPTQRVG 74 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + + H +P LSL+ +++ F RI + K+D + F E K+DG + Sbjct: 75 ATPLDAFDTIAHEVPMLSLDNVFDETSFLAFSKRIND--RLKNDGELTFCCELKLDGLAV 132 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198 ++ YE G V AA RGDG +GE+++A IR + IP R+ NIP+ +EVRGEV++ F Sbjct: 133 SLLYENGLLVRAATRGDGTTGENITANIRTVGAIPLRLRGDNIPQRLEVRGEVFMKHKGF 192 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFAKGQYE 256 ALN+E G K +ANPRNAA+G LR+L+P TR L F +G+G ++ Sbjct: 193 EALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTFLCYGVGLVEGGALPDTHWQ 252 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + R G PV++ +R ++ +Y +++ R TL +DIDG+V KV+E +LQ++LG Sbjct: 253 RLMQFRDWGLPVSDRIRLCTGSDAVLDFYRQVEQERETLGFDIDGVVIKVNELTLQERLG 312 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR+PRW ++ KF ++ T L D++ Q+GRTG +TPVARLEPV + G +++NATLHN Sbjct: 313 FVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGVVVSNATLHNA 372 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L I++GDRV V+RAG+VIP++V ++++ER DA+P FP CP+ Sbjct: 373 DEIERL-----------GIQIGDRVAVRRAGDVIPQIVSVVLSERPADARPVVFPEQCPV 421 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S + R G+ V RCTGGL C AQ+ E LKHFVSR A ++EG+G + +D + Sbjct: 422 CGSELER----VDGEAVT--RCTGGLFCGAQRKEALKHFVSRRALDVEGMGDKIIDQLVE 475 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E ++ PAD+F L T ++ G S NL +++NK ++ + RF+++ Sbjct: 476 KE----YVKTPADLFRLSAGILTGLDRM------GPKSAQNLVNALNKAKSTTFARFLYA 525 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A SLA ++ + + A + D +L +V VG ++A + F Sbjct: 526 LGIRDVGEATAASLASHFGTLE----------ALQSADLEALQQVQDVGIVVATHVRNFL 575 Query: 617 QNPRNICAVEALLKEVSPSIGRHE--------KNVSSEIENKKLVFTGTLQKIQRHKAQE 668 N ++ L+ E +IG H + S K +V TG+L + R +A++ Sbjct: 576 DEAHNQQVIQELISE---NIGIHWPAPVVVDVEASDSPFAGKTVVLTGSLTLLSRDEAKD 632 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 633 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLTKAQELGIEVIDEAEMMRLL 682 >gi|90579891|ref|ZP_01235699.1| DNA ligase [Vibrio angustum S14] gi|90438776|gb|EAS63959.1| DNA ligase [Vibrio angustum S14] Length = 670 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 257/695 (36%), Positives = 405/695 (58%), Gaps = 49/695 (7%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 YH YY P I D+EYD + ++ I P+ + P+ ++GG +V Sbjct: 18 YHGHRYYVEDNPEIPDAEYDRMMQQLIKIEADHPEWITVDSPS---QRVGGAALEGFTQV 74 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H I LSL+ +N +DLR F R+ + + ++ + EPK+DG +++ YE G V Sbjct: 75 KHEIAMLSLDNAFNDDDLRAFQKRLQD--RLRSGATLSYCCEPKLDGLAVSLMYENGVLV 132 Query: 150 YAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 AA RGDG +GE+++ +R I IP ++ + PE +EVRGEV++ K F ALN + + Sbjct: 133 QAATRGDGATGENITHNVRTIRAIPLKLQGDDWPERLEVRGEVFMPKKGFEALNAKALKK 192 Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQKMRCLGF 266 G K +ANPRNAA+G LR+L+P TR L+F+ + +G A QYE L +++ G Sbjct: 193 GDKAFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVDGRELANTQYERLCQLKAWGL 252 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 P+ +R+ ++ ++SY+ + R +L Y+IDG+V KVD+ Q+QLG AR+PRW I Sbjct: 253 PMCPEIRKVDSIEDVISYHQSIGEKRQSLGYEIDGVVIKVDDVDTQQQLGFVARAPRWAI 312 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++NATLHN D Sbjct: 313 AYKFPAQEEMTILNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNAD--------- 363 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 +V R G + +GD V+++RAG+VIP++ ++ + R +AQ FP+ CP+CQS+V R Sbjct: 364 EVARLG--VMIGDTVIIRRAGDVIPQIASVVESRRPENAQAIVFPTECPVCQSKVER--- 418 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 G+ VA RCTGGL C AQ+ E LKHFVSR A +++G G++ ++ E + Sbjct: 419 -IEGEAVA--RCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQLVDRE----MVTT 471 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 PAD+F + T ++ G S L D++N + +L RFI SLGIR VG Sbjct: 472 PADLFKFSAGEVTVLERM------GPKSAQKLVDALNASKLTTLPRFIHSLGIREVGEAT 525 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 A +LA Y+ + ++ +Q LI VP VGDI+A I F++ N+ V Sbjct: 526 AANLANYFETLESISQATKE----------QLIEVPDVGDIVAAHIFNFFREEHNMVVVN 575 Query: 627 ALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 L+EV P I + +++V ++ K +V TG+L ++ R A+ + +LGA V+ +S+ Sbjct: 576 E-LQEVGIHWPEIEKRDEDVELPLDGKVVVLTGSLSQLTRSDAKAALQKLGAKVTGSVSK 634 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 KTD+++ G+ GSKL KAQ+LG++I +E++ + L+ Sbjct: 635 KTDLLVAGEAAGSKLTKAQELGIEIWDEQKLVDLM 669 >gi|258544861|ref|ZP_05705095.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826] gi|258519884|gb|EEV88743.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826] Length = 668 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 261/704 (37%), Positives = 403/704 (57%), Gaps = 48/704 (6%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 L++L +EI HD YY P+I D+EYDAL R A+ A + ++ P+ ++GG Sbjct: 7 LAALREEIRAHDHAYYVLDNPLIADAEYDALLRELRALEAASGEPVPADSPS---QRVGG 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + + + V H++P LSL+ +++ E+ F+ R+ ++ D + + + EPK DG I+ Sbjct: 64 KADGAFAPVAHAVPMLSLDNVFSEEEFAAFVKRLQ---ERLDHDELLLSAEPKFDGLAIS 120 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 +RYE G AA RGDG +GEDV+A +R I IP R+L P +IE+RGE+Y+ K F Sbjct: 121 LRYENGVLTRAATRGDGATGEDVTANVRTIRAIPLRLLDATPPAVIEIRGEIYMPKAAFA 180 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE-M 257 ALN G K +ANPRNAA+G LR+L+P +R+L+F+ +GLG Y + Sbjct: 181 ALNAAAERDGGKTFANPRNAAAGSLRQLDPAITASRHLSFYAYGLGAHDGYALPATYSAL 240 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L + R G PV ++ V+Y + + R LPY+IDG+VYK D ++ Q+ G Sbjct: 241 LAQYRDWGVPVCPLQESLSSAAAAVAYMDALGKKRHDLPYEIDGVVYKADRYADQQAAGF 300 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PRW I+ KF + +T + ID+Q+GRTG +TPVARL PV +GG +TNATLHN D Sbjct: 301 VSRAPRWAIAWKFPAVEKTTVVEAIDVQVGRTGAVTPVARLRPVEVGGVTVTNATLHNAD 360 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 +V R +D+RVGD V V+RAG+VIP++V ++ R D+QPF+ P+ CP+C Sbjct: 361 ---------EVAR--KDVRVGDTVFVRRAGDVIPEIVKTVLEARPADSQPFAMPTHCPVC 409 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +S ++R G+ VA RC+GGL C AQ+++ L HF SR A +I+GLG + ++ + Sbjct: 410 ESEIIR----PEGEAVA--RCSGGLHCRAQRVQALIHFASRKALDIQGLGDKLIEQLVQD 463 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + PAD+F L + ++ + S N+ ++ + +L RFI++L Sbjct: 464 G----RVHSPADLFALTLADWAALPRM------AEKSAQNILAALEAAKATTLPRFIYAL 513 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG A LA++Y +E+ ++A + DD L + +G ++AQ I F+ Sbjct: 514 GIREVGNVSAELLARHY-------RELPALLAASEDD---LQAIDGIGPVMAQYIRHFFL 563 Query: 618 NPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + N + AL P + S + K +V TGTL + R +A ++ +LG Sbjct: 564 DDANRAVIAALQAAGIHWPVVEAPVIAADSPLAGKTVVITGTLPTMTRDEAAAHIARLGG 623 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ +S+KTD ++ GD GSKLEKAQ LGV I++E Q L L+ Sbjct: 624 KTASAVSKKTDYLLAGDKAGSKLEKAQSLGVAIIDEAQLLAWLE 667 >gi|88800009|ref|ZP_01115580.1| DNA ligase, NAD-dependent [Reinekea sp. MED297] gi|88777287|gb|EAR08491.1| DNA ligase, NAD-dependent [Reinekea sp. MED297] Length = 674 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 261/705 (37%), Positives = 391/705 (55%), Gaps = 53/705 (7%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 +L Q+I +D YY ++ I D EYD L I P P P ++ G Sbjct: 10 ALIQQIRRYDHEYYVLNESAIPDVEYDRLMEELKRIESEHPQWV---TPQSPTQRVAGAP 66 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 V H +P LSL+ +N +DL F+ R+ + D + I F EPK+DG +++ Sbjct: 67 QAGFETVEHRMPMLSLDNAFNHDDLGAFVKRLKD--RLNDPSPIEFACEPKLDGIAVSLL 124 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLAL 201 YE+G V A RGDG +GED++A +R I +IP L + PE++EVRGE+Y+ K F + Sbjct: 125 YEQGHLVRGATRGDGTTGEDITANVRTIRSIPLSLQGDGWPEVLEVRGEIYMPKAGFERM 184 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG-----QY 255 NDE G K + NPRNAASG LR+L+ TR L + +G +F G QY Sbjct: 185 NDEARERGDKVFVNPRNAASGSLRQLDSRLTATRPLEMCCYSVG----VFEGGTLPDTQY 240 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 +++QK G +N + G++ YY++++ R+ LPY+IDG+VYKV+ F LQ++L Sbjct: 241 QLMQKFSEWGLKINPEMALVTDVQGLLDYYDQLEQKRNGLPYEIDGIVYKVNSFGLQRRL 300 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I+ KF ++ T LLD++ Q+GRTG LTPVARLEPV +GG ++NATLHN Sbjct: 301 GFVSRAPRWAIARKFPAQEEVTTLLDVEFQVGRTGALTPVARLEPVFVGGVTVSNATLHN 360 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L D+ +GDRV+V+RAG+VIP+VV + +R P+A+P + P CP Sbjct: 361 MDEIERL-----------DVHIGDRVIVRRAGDVIPQVVKSLAEDRSPEARPITAPEECP 409 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+V R A RCTGG+ CSAQ+ E LKHFVSR A +I+G G++ +D Sbjct: 410 ECGSKVDRVAGE------AVMRCTGGMICSAQRREALKHFVSRKAMDIDGFGEKIVDALL 463 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 I +DIF L + + ++ ++ GD S NL +I+ R +L RFIF Sbjct: 464 AGN----KIHAASDIFELTQEEVSALERM------GDKSAANLIAAIDAARETTLARFIF 513 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG AR+LA ++ + + L+ V VG +A +V + Sbjct: 514 ALGIREVGETTARNLAMHFGTIEKLMSATEA----------QLLDVEDVGPKVAAHVVNY 563 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + +N ++ L+ +S + + V TG + ++ R +A++Y+ QLGA Sbjct: 564 FSEEQNRIEIQRLIALGVTWDDPIPDQSASVLAGQTWVVTGKISQMSRDEAKDYLLQLGA 623 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S KT ++ G GSKL KA++LGV +M+E +F+ L Q Sbjct: 624 KVAGSVSAKTTQVVAGPGAGSKLRKAEELGVPVMDEAEFVEWLTQ 668 >gi|73541575|ref|YP_296095.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134] gi|123732913|sp|Q470D2|DNLJ_RALEJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|72118988|gb|AAZ61251.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134] Length = 711 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 266/731 (36%), Positives = 394/731 (53%), Gaps = 64/731 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P L A + + L E+ H+ YY P I D+EYDAL A+ P+L Sbjct: 15 PAGGLPPATAAERVQWLRDELDRHNYQYYVLDAPTIPDAEYDALFTELQALEAEHPELL- 73 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR----IYRFWQKKDD 123 P+ P ++GG + V H +P LSL ++ ED+ F R + R + Sbjct: 74 --TPDSPTQRVGGAPLSAFDTVRHRVPMLSLNNGFSDEDVTGFDRRCAQGLGRSAAAGGE 131 Query: 124 NSIF-------FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176 +F + E K DG +++RYE G+ V AA RGDG +GEDV+ +R I IP Sbjct: 132 QDLFSAAEGVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLK 191 Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRY 235 L P ++EVRGEV++ + DF LN G K + NPRNAA+G LR+L+P R Sbjct: 192 LRGAAPAVLEVRGEVFMYRRDFDKLNARQAEAGDKTFVNPRNAAAGSLRQLDPRITAKRP 251 Query: 236 LNFFVHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L+FF +GLG+ I + ML +G PV N G++ +Y ++ R Sbjct: 252 LSFFAYGLGELQGIERPATHSAMLDGFATMGLPVCNERAVVKGAQGLLDFYRKVGEKRDQ 311 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LPYDIDG+VYKV+ + Q+QLG +R+PR+ ++HKF ++ +T + DI++Q+GRTG +TP Sbjct: 312 LPYDIDGVVYKVNALAEQEQLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITP 371 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +TNATLHNED ++ +D+ +GD V+V+RAG+VIP+VV Sbjct: 372 VARLQPVFVGGVTVTNATLHNEDEVR-----------RKDVHIGDTVIVRRAGDVIPEVV 420 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 +++ R DA+ F P+ CP+C S + R + A RCTGGL C+AQ+ + L H Sbjct: 421 AVVLERRPDDARAFVMPTACPVCGSHIERLEDE------AIARCTGGLICAAQRKQALLH 474 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F R A +IEGLG + ++ +R PAD++ L K+ + D S Sbjct: 475 FAQRRAMDIEGLGDKVVEQLVDQG----IVRTPADLYKL------GVAKLAALDRMADKS 524 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 NL +I R+ + RFIFSLGIRHVG A+ LA+++ ++A D Sbjct: 525 AGNLVAAIEASRSTTFNRFIFSLGIRHVGEATAKDLARHFGKLDGL------MVA----D 574 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIE 648 +L+ V VG ++AQ+IV F+ P N+ +E L E P + R + + Sbjct: 575 EAALLEVNDVGPVVAQSIVNFFGEPHNVEVIEQLRAAGVHWPESEP-VAR----APAPLA 629 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K V TGTL + R A+E + GA V+ +S+KTD ++ G GSKL+KA+ LGV + Sbjct: 630 GKTFVLTGTLPSLSREAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPV 689 Query: 709 MNEEQFLFLLQ 719 ++E L LL+ Sbjct: 690 LDEAGMLALLE 700 >gi|166216279|sp|A0LI67|DNLJ_SYNFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 675 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 268/713 (37%), Positives = 388/713 (54%), Gaps = 59/713 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+A + +L +EI +H+ YY +P I D YD L R + ++P L P+ P Sbjct: 5 EKAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALI---TPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G H+IP LSLE + ++ +F R+ + + D + F EPK+ Sbjct: 62 TQRVGAAPAEKFLPFPHTIPMLSLENAMSEAEVFEFARRVRKILGDRGD--VDFMAEPKM 119 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----SLNIPEIIEVRG 189 DG + + YE G+ A RGDG+ GEDV+ + I IP L + P I VRG Sbjct: 120 DGLAVELVYENGELTGAGTRGDGYVGEDVTRNAKTIRAIPLKLYAGAGGASPPARIAVRG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVY+ + DF ALN G +ANPRNAA+G LR+L+P+ R L F +G+G+ S Sbjct: 180 EVYMDRKDFAALNRSREQAGEPLFANPRNAAAGSLRQLDPSVTAARSLKAFFYGVGEVSG 239 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K Q + L+++R G PVN R + VS+YNE+ + R LP++IDG+V KV+ Sbjct: 240 YRFKTQAQTLEQLRRWGLPVNPLSRVCPSIEDAVSFYNEIAAGRDALPFEIDGVVVKVNS 299 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+ LGE++RSPRW I++KF+ QA TR+LDI +Q+GRTG+LTPVA LEPV +GG + Sbjct: 300 IEWQEMLGEKSRSPRWAIAYKFSPHQARTRVLDIKVQVGRTGVLTPVAELEPVTVGGVTV 359 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN+D ++ +DIRV D+V+V+RAG+VIP+VV++I R + F Sbjct: 360 RRATLHNQDEVE-----------RKDIRVRDQVMVRRAGDVIPEVVEVIGEARTGGEEVF 408 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C S VVR P+ A HRC C AQ L+HF SRDA NIEGLGK Sbjct: 409 QMPGQCPSCGSEVVR--LPEE----AVHRCL-NRNCPAQIKASLRHFASRDAMNIEGLGK 461 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + +D++ L S +E + GF S NL +SI + + Sbjct: 462 NIVSMLVDRG----IVESVSDLYRL------SVETLEQLPGFAGKSSRNLVESIERSKKT 511 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L F+++LGI HVG+ +AR LA+ + + A L+ V VG+++ Sbjct: 512 NLADFLYALGIYHVGSHVARLLAERF----------GTLDAVRRASVEELMSVNGVGEVV 561 Query: 609 AQAIVEFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 A+++V ++ P N VE+LL P G V + K +VFTG L + Sbjct: 562 ARSVVHYFSLPANRTLVESLLSAGLEMAATEPEAG----PVDAFWNGKTVVFTGALSSMT 617 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R A GA VS +SRKTDI++ G +PGSK+EKA+QLG+ I++E +FL Sbjct: 618 RSNAAALTASRGARVSDSVSRKTDIVVAGADPGSKVEKARQLGITILDEREFL 670 >gi|329297490|ref|ZP_08254826.1| NAD-dependent DNA ligase LigA [Plautia stali symbiont] Length = 672 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 255/713 (35%), Positives = 416/713 (58%), Gaps = 59/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++++L + +H+ Y+ P I D+EYD L R + A PDL P+ P + Sbjct: 5 QEQITALRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELESAHPDLI---TPDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + +V H +P LSL+ ++ F R+ + D+ + + E K+DG Sbjct: 62 VGAAPLATFEQVRHEVPMLSLDNTFDEAGFLAFNKRMQDRLKSTDN--LTYCCELKLDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ YE G V AA RGDG +GE+++A +R I IP R+ NIP +EVRGEV+++++ Sbjct: 120 AVSLLYENGLLVRAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVFMTES 179 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKG 253 F LN+E G K +ANPRNAA+G LR+L+P R L FF +G G + E+ A Sbjct: 180 GFEKLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPAS- 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ LQ+ + G PV++ +R +T ++++Y +++ R +L +DIDG+V KVD +LQ+ Sbjct: 239 HWQRLQQFKAWGLPVSDRIRLVHTADEVLAFYRQVEQDRPSLGFDIDGVVIKVDSQALQE 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++NATL Sbjct: 299 QLGFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I L +R+GD+V+++RAG+VIP+VV+++ +ER DA+ FPS Sbjct: 359 HNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPADAREIVFPSH 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S D+ G+ V RCTGGL C AQ+ E LKHFVS A +++G+G + +D Sbjct: 408 CPVCGS----DVESVEGEAVT--RCTGGLICGAQRKEALKHFVSHRAMDVDGMGDKIIDQ 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + E ++ PAD+F L + K+ + G S N+ D++ K + +L RF Sbjct: 462 LVEKE----YVKTPADLFRL------TAGKLTGLDRMGPKSAQNVVDALEKAKLTTLPRF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A +LA ++ E+ ++ N D +LI V VG ++A + Sbjct: 512 LYALGIREVGEATAANLANHF-------GELEKVM---NADLDALIAVQDVGKVVAAHVR 561 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKIQRHK 665 F + N ++++++ +G H + + S K +V TG+L ++ R Sbjct: 562 NFMEEESN----REVIRQLTDEVGVHWPAVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDD 617 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 618 AKARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670 >gi|300717845|ref|YP_003742648.1| DNA ligase [Erwinia billingiae Eb661] gi|299063681|emb|CAX60801.1| DNA ligase [Erwinia billingiae Eb661] Length = 672 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 262/715 (36%), Positives = 414/715 (57%), Gaps = 51/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + ++++L+ + +H+ Y+ P + D+EYD L R + A P+L ++ P Sbjct: 1 MESVQDKITALQTTLRHHEYQYHVMDDPEVPDAEYDRLMRELRELEQAHPELVTADSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ ++ E F R+ + DD I F E K Sbjct: 60 --QRVGAAPLGAFEQVRHEVPMLSLDNAFDEESYLAFYKRVQDRLKNTDD--ITFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++A +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGLLVRAATRGDGTTGENITANVRTIRAIPLRLHGENIPSRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + F ALN+E G K +ANPRNAA+G LR+L+P R L FF +G G + E+ Sbjct: 176 MPLAGFEALNNEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + LQ+ + G PV++ ++ +T ++++Y +++ R TL +DIDG+V KVD Sbjct: 236 -PRSHMARLQQFKAWGLPVSDRIKLCHTAEEVLAFYRQVEQDRPTLGFDIDGVVIKVDSQ 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 DLQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVIVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GDRV+++RAG+VIP+VV +I +ER DA+ Sbjct: 355 NATLHNADEIERL-----------GLRIGDRVIIRRAGDVIPQVVGVIESERPDDAREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G++VA RCTGGL C AQ+ LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +S+ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNSLEKAKTTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF++SLGI VG A +LA ++ S + I+A + D +LI V VG ++A Sbjct: 508 LARFLYSLGISEVGEATAANLAAHFGS-------LEKIMAADLD---ALIAVQDVGTVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVS---PSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F N + L++E P++ + + S K +V TG+L + R + Sbjct: 558 SHLRNFMDEESNREVIRQLVEEAGINWPAVEVVNAAEIDSPFAGKTVVLTGSLTILSRDE 617 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 618 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMIRLLGE 672 >gi|238895883|ref|YP_002920619.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae NTUH-K2044] gi|238548201|dbj|BAH64552.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 671 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 255/715 (35%), Positives = 413/715 (57%), Gaps = 52/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R+ + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTDHLTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A +LQ + G PV++ V +T +++YY +++ R L +DIDG+V KVD Sbjct: 236 PASHSARLLQ-FKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ Sbjct: 355 NATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+CQS V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCQSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA ++ + + Q L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAHFGTLEALEQATIE----------ELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 F+ N + LL E +P + + E+ + S K +V TG+L ++ R Sbjct: 558 THTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEE-IDSPFAGKTVVLTGSLSQLSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+E + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 617 AKERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|260774893|ref|ZP_05883794.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260609148|gb|EEX35306.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 669 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 261/709 (36%), Positives = 406/709 (57%), Gaps = 47/709 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 ++ ++ L+ L + + YH YY P + D+EYD L R + PDL + P+ Sbjct: 3 QEIQERLNQLRETLHYHGVKYYVEDNPEVPDAEYDRLMRELLELEAEHPDLVSIDSPS-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG+ VTH IP LSL+ ++ E+L F R+ + N F EPK+ Sbjct: 61 -QRVGGQPLDGFQSVTHEIPMLSLDNAFDDEELESFHKRMSDRIPTAEFN--VFCCEPKL 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYI 193 DG +++ YE G V AA RGDG +GE+++ +R I +IP LS P+ IEVRGEV++ Sbjct: 118 DGLAVSLLYENGILVQAATRGDGTTGENITENVRTIKSIPLKLSGQGWPQRIEVRGEVFM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FA 251 K F LN + G K + NPRNAA+G LR+L+ TR L+F+ + +G I + Sbjct: 178 PKEGFDKLNQQAQKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGIALS 237 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + YE +++ G P+ R+ + +YY ++ R LPY+IDG+V KVD+ +L Sbjct: 238 ESHYERFLQLKGWGLPMCPETRRVANLTEVKAYYQDILERREALPYEIDGVVIKVDDIAL 297 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NA Sbjct: 298 QEQLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L ++VGD V+++RAG+VIP++V +I R +A+ FP Sbjct: 358 TLHNADEIERL-----------GVKVGDSVIIRRAGDVIPQIVSVIEERRPGNARDIVFP 406 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S V R G+ VA RC+GGL C AQ+ E LKHFVSR A +++GLG++ + Sbjct: 407 ERCPVCSSEVER----IEGEAVA--RCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVI 460 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + E + PAD+F L S I + G S N+ D++N+ + +L Sbjct: 461 EQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALNQAKLTTLP 510 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF++SLGIR VG A +LA+Y+ + ++ + A N++ LI V +GDI+A Sbjct: 511 RFLYSLGIREVGEATAANLAQYF-------KTLDAVKAANHE---QLIEVSDIGDIVASH 560 Query: 612 IVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ F+ +N ++ LL + P I ++ + K +V TG+L ++ R+ A+ Sbjct: 561 VIAFFAQDKNQQVIQDLLDQGIEWPEIEEQSEDTPQPLAGKTVVLTGSLSQLSRNDAKSA 620 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ + L+ Sbjct: 621 LQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLVDLI 669 >gi|59712497|ref|YP_205273.1| NAD-dependent DNA ligase LigA [Vibrio fischeri ES114] gi|75353581|sp|Q5E3L1|DNLJ_VIBF1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|59480598|gb|AAW86385.1| DNA ligase, NAD(+)-dependent [Vibrio fischeri ES114] Length = 668 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 262/714 (36%), Positives = 410/714 (57%), Gaps = 54/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +SIEQ L L+Q+++YH YY P + D+EYD + ++ +I P+L + P Sbjct: 1 MSIEQT---LDELKQQLNYHAYRYYVEDSPELPDAEYDRMMQQLLSIESEHPELVTVDSP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GGE ++ H IP LSL+ ++ E+L F R+ K + F E Sbjct: 58 S---QRVGGEALDGFTQIQHEIPMLSLDNAFSDEELEAFEKRMNDRLISKPVS--LFCCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 PK+DG +++ Y GK V A RGDG +GE+++ +R I IP L P +EVRGE Sbjct: 113 PKLDGLAVSLLYVDGKLVQAGTRGDGTTGENITENVRTIRCIPLTLQGEGWPTRLEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTS 247 V++ K F ALN+ + G KP+ANPRNAA+G LR+L+ TR L+F+ + +G + Sbjct: 173 VFMPKAGFEALNERALKRGEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVIEGG 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ Y+ +++ G P+ +Q ++ + +YY ++ R L Y+IDG+V KVD Sbjct: 233 EL-ETSHYQRFVQLKSWGLPMCEETKQCHSLTEVKAYYKDILERRDALKYEIDGVVIKVD 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG Sbjct: 292 DIALQEQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVGGVT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I L + +GD V+++RAG+VIP++V ++ R D++ Sbjct: 352 VSNATLHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPTDSKA 400 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +P CP+C S + R G+ V RC GL C AQ+ E LKHFVSR A +++GLG Sbjct: 401 IVYPIHCPVCGSNLER----VEGEAVT--RCGAGLVCQAQRKEALKHFVSRKALDVDGLG 454 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E + PAD+F L T ++ G S N+ D++NK + Sbjct: 455 DKVVEQLVDKE----MVETPADLFKLSAGLLTVLERM------GPKSAQNVVDALNKAKA 504 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF++SLGIR VG A +LA ++ + + A + LI V VGDI Sbjct: 505 TTLPRFLYSLGIREVGEATAANLAAHFYTLE----------AIQVATFEQLIEVSDVGDI 554 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 +A+ ++ F+ P N +E L+E+ P I +++V + K +V TGTL K++R+ Sbjct: 555 VAKHVLNFFAEPHNKTVIED-LQEMGIHWPEIKALDESVPQPLAGKVVVLTGTLHKLKRN 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ + +LGA V+ +S+KTDI+ G+ GSKL KA++LGV++MNEEQ + LL Sbjct: 614 EAKAALQELGAKVTGSVSKKTDILFAGEAAGSKLAKAEELGVEVMNEEQLIELL 667 >gi|302878427|ref|YP_003846991.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2] gi|302581216|gb|ADL55227.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2] Length = 674 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 259/710 (36%), Positives = 396/710 (55%), Gaps = 52/710 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + +L EI H+ YY P + D+ YD L R + P+ S+ P + Sbjct: 7 QQRIKALRSEIEAHNYQYYVLDAPTVPDAGYDTLFRELQRLEAQHPEFLTSDSPT---QR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G +V H P LSL ++ +++ F R+ + + + +E K DG Sbjct: 64 VGAAPLKYFAEVPHRTPMLSLNNAFSADEVIAFDARVR---DALGIDEVEYAVELKFDGL 120 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----IEVRGEVYI 193 I + Y G FV A RGDG +GEDV+ +R + +IP L E+ +EVRGEV + Sbjct: 121 AINLSYRNGIFVQGATRGDGSTGEDVTENLRTVRSIPLRLKEANGEVLCADVEVRGEVLM 180 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 DF LN++ G K + NPRNAA+G LR+L+ TR+L+F+ +G+G + Sbjct: 181 FTRDFDLLNEQQRLNGEKEFVNPRNAAAGSLRQLDSAVTATRHLSFYAYGVGLCDGVNLS 240 Query: 253 GQYEM-LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 G++++ + ++ G PV G++ YY EM ++R+ LP+ IDG+VYKV++ + Sbjct: 241 GKHDLQMAQLADWGVPVATQRSTVQGVAGLLDYYKEMGALRAALPFAIDGVVYKVNDIAQ 300 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG +R+PR+ I+HKF ++A T LLDID+Q+GRTG LTPVARL PV +GG +TNA Sbjct: 301 QQMLGFVSRAPRFAIAHKFPAEEAMTTLLDIDVQVGRTGALTPVARLTPVFVGGVTVTNA 360 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED I+ +D+R+GD V+V+RAG+VIP+V +++ R DA+ FS P Sbjct: 361 TLHNEDEIR-----------RKDVRIGDTVIVRRAGDVIPEVARVVLERRPSDARVFSMP 409 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S VVR+ + AA RCTGGL C AQ+ + L HF R A NI+GLG + + Sbjct: 410 QACPVCGSHVVREED------AAAWRCTGGLFCPAQRKQALLHFAGRRAMNIDGLGDKLV 463 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + ++ + PAD++ L S ++ G+ S NL D+I R +L Sbjct: 464 EQLVDAQ----QVSTPADLYKLGMSGLVSLERM------GEKSALNLLDAIEASRKTTLA 513 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+F+LGIR+VG AR LA+++ + Q D L +V VG ++AQ+ Sbjct: 514 RFLFALGIRNVGETTARDLAQHFGALDAIMQA----------DAERLQQVRDVGPVVAQS 563 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEY 669 +V+F+ N+ AV A L+E H + K V TGTL + R +A+E Sbjct: 564 MVDFFAEAHNL-AVIAQLREAGVHWDEHSPAPQEDRIYTGKTFVLTGTLASLSRQQAKER 622 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA VS +S+KTD ++ G + GSKLE+A +LGV +++E +FL L++ Sbjct: 623 LEALGAKVSGSVSKKTDFVVAGSDSGSKLERAMELGVAVLSESEFLLLIE 672 >gi|289165264|ref|YP_003455402.1| DNA ligase [Legionella longbeachae NSW150] gi|288858437|emb|CBJ12315.1| DNA ligase [Legionella longbeachae NSW150] Length = 671 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 264/713 (37%), Positives = 403/713 (56%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I++ +++ + L+ +I +D YY +P++ D EYD R + P+L ++ P Sbjct: 3 IDEIKEQAARLKDKIRQYDYHYYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTADSPT- 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLE 131 ++GG + VTH P LSL +++ E+L+ F+ R+ +K D+ + FT E Sbjct: 62 --QRVGGTPADAFAPVTHRQPMLSLSNVFSEEELQAFVKRVT---EKLDEPAQQLVFTCE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG + I YE G VYAA RGDG +GE+++A I+ I IP VL N P IE+RGE Sbjct: 117 PKLDGLAVNITYENGVLVYAATRGDGTTGENITANIKTIAAIPLVLRSNKPPRFIEIRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ K+ F N + +G K +ANPRNAA+G LR+LNP R L + +G+G + Sbjct: 177 VYMPKSGFEQYNKKAKELGEKTFANPRNAAAGSLRQLNPAVTANRPLAIYCYGIGACEDY 236 Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +E LQ ++ LGF V++ ++ G + YY M + R LP++IDG+VYKVD Sbjct: 237 RLPNTHWEQLQLLKELGFKVSSESKREVGIKGCLDYYCNMLARRDQLPFEIDGVVYKVDS 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG +R+PR+ +HKF + T +L +D Q+GRTG LTPVARL PVN+ G + Sbjct: 297 IALQQQLGFISRAPRFACAHKFPATEEITEILAVDFQVGRTGALTPVARLAPVNVAGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I +DIR+GD+V+++RAG+VIP+VV +++ +R D + Sbjct: 357 SNATLHNMDEIT-----------RKDIRIGDKVIIRRAGDVIPEVVSVVLEQRPADTKEI 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VVR+ G+ VA RC GGL C AQ + HF SR A +IEGLG Sbjct: 406 CLPLKCPVCDSDVVRE----EGEAVA--RCIGGLFCKAQLKRMMWHFASRKAMHIEGLGS 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ D +P D++ L + + N+ G+ S NL ++ + Sbjct: 460 VLIEQLV---DEGIVRHLP-DLYRL------DVSTLANLPRMGEKSAKNLLQALEHSKKT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF+++LGIR +G AR LA+++ +I A +N L+ + +G + Sbjct: 510 TLSRFLYALGIREIGEASARVLAEHF----------GDIEAISNATEADLMSLEDMGPVG 559 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A IV F+ N+ ++ LL E+ P I + ++N + K +V TGTL + R + Sbjct: 560 AANIVHFFAQTHNLQVIQHLL-ELGIHWPKIEKKQQNKEHPLFGKTVVLTGTLNTLSREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + LGA VS +S KTD +I G G+KL+KA LG+ I++EEQFL +L Sbjct: 619 AKAKLLILGAKVSGSVSAKTDYVIAGIEAGTKLDKANNLGISILDEEQFLHML 671 >gi|270159993|ref|ZP_06188649.1| DNA ligase [Legionella longbeachae D-4968] gi|269988332|gb|EEZ94587.1| DNA ligase [Legionella longbeachae D-4968] Length = 671 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 264/713 (37%), Positives = 403/713 (56%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I++ +++ + L+ +I +D YY +P++ D EYD R + P+L ++ P Sbjct: 3 IDEIKEQAARLKDKIRQYDYHYYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTADSPT- 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLE 131 ++GG + VTH P LSL +++ E+L+ F+ R+ +K D+ + FT E Sbjct: 62 --QRVGGTPADAFAPVTHRQPMLSLSNVFSEEELQAFVKRVT---EKLDEPAQQLVFTCE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG + I YE G VYAA RGDG +GE+++A I+ I IP VL N P IE+RGE Sbjct: 117 PKLDGLAVNITYENGVLVYAATRGDGTTGENITANIKTIAAIPLVLRSNKPPRFIEIRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ K+ F N + +G K +ANPRNAA+G LR+LNP R L + +G+G + Sbjct: 177 VYMPKSGFEQYNKKAKELGEKTFANPRNAAAGSLRQLNPAVTANRPLAIYCYGIGACEDY 236 Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +E LQ ++ LGF V++ ++ G + YY M + R LP++IDG+VYKVD Sbjct: 237 RLPNTHWEQLQLLKELGFKVSSESKREVGIKGCLXYYCNMLARRDQLPFEIDGVVYKVDS 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG +R+PR+ +HKF + T +L +D Q+GRTG LTPVARL PVN+ G + Sbjct: 297 IALQQQLGFISRAPRFACAHKFPATEEITEILAVDFQVGRTGALTPVARLAPVNVAGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I +DIR+GD+V+++RAG+VIP+VV +++ +R D + Sbjct: 357 SNATLHNMDEIT-----------RKDIRIGDKVIIRRAGDVIPEVVSVVLEQRPADTKEI 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VVR+ G+ VA RC GGL C AQ + HF SR A +IEGLG Sbjct: 406 CLPLKCPVCDSDVVRE----EGEAVA--RCIGGLFCKAQLKRMMWHFASRKAMHIEGLGS 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ D +P D++ L + + N+ G+ S NL ++ + Sbjct: 460 VLIEQLV---DEGIVRHLP-DLYRL------DVSTLANLPRMGEKSAKNLLQALEHSKKT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF+++LGIR +G AR LA+++ +I A +N L+ + +G + Sbjct: 510 TLSRFLYALGIREIGEASARVLAEHF----------GDIEAISNATEADLMSLEDMGPVG 559 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A IV F+ N+ ++ LL E+ P I + ++N + K +V TGTL + R + Sbjct: 560 AANIVHFFAQTHNLQVIQHLL-ELGIHWPKIEKKQQNKEHPLFGKTVVLTGTLNTLSREE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + LGA VS +S KTD +I G G+KL+KA LG+ I++EEQFL +L Sbjct: 619 AKAKLLILGAKVSGSVSAKTDYVIAGIEAGTKLDKANNLGISILDEEQFLHML 671 >gi|116748867|ref|YP_845554.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB] gi|116697931|gb|ABK17119.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB] Length = 694 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 268/713 (37%), Positives = 388/713 (54%), Gaps = 59/713 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+A + +L +EI +H+ YY +P I D YD L R + ++P L P+ P Sbjct: 24 EKAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALI---TPDSP 80 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G H+IP LSLE + ++ +F R+ + + D + F EPK+ Sbjct: 81 TQRVGAAPAEKFLPFPHTIPMLSLENAMSEAEVFEFARRVRKILGDRGD--VDFMAEPKM 138 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----SLNIPEIIEVRG 189 DG + + YE G+ A RGDG+ GEDV+ + I IP L + P I VRG Sbjct: 139 DGLAVELVYENGELTGAGTRGDGYVGEDVTRNAKTIRAIPLKLYAGAGGASPPARIAVRG 198 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVY+ + DF ALN G +ANPRNAA+G LR+L+P+ R L F +G+G+ S Sbjct: 199 EVYMDRKDFAALNRSREQAGEPLFANPRNAAAGSLRQLDPSVTAARSLKAFFYGVGEVSG 258 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 K Q + L+++R G PVN R + VS+YNE+ + R LP++IDG+V KV+ Sbjct: 259 YRFKTQAQTLEQLRRWGLPVNPLSRVCPSIEDAVSFYNEIAAGRDALPFEIDGVVVKVNS 318 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+ LGE++RSPRW I++KF+ QA TR+LDI +Q+GRTG+LTPVA LEPV +GG + Sbjct: 319 IEWQEMLGEKSRSPRWAIAYKFSPHQARTRVLDIKVQVGRTGVLTPVAELEPVTVGGVTV 378 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN+D ++ +DIRV D+V+V+RAG+VIP+VV++I R + F Sbjct: 379 RRATLHNQDEVE-----------RKDIRVRDQVMVRRAGDVIPEVVEVIGEARTGGEEVF 427 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C S VVR P+ A HRC C AQ L+HF SRDA NIEGLGK Sbjct: 428 QMPGQCPSCGSEVVR--LPEE----AVHRCL-NRNCPAQIKASLRHFASRDAMNIEGLGK 480 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + +D++ L S +E + GF S NL +SI + + Sbjct: 481 NIVSMLVDRG----IVESVSDLYRL------SVETLEQLPGFAGKSSRNLVESIERSKKT 530 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L F+++LGI HVG+ +AR LA+ + + A L+ V VG+++ Sbjct: 531 NLADFLYALGIYHVGSHVARLLAERF----------GTLDAVRRASVEELMSVNGVGEVV 580 Query: 609 AQAIVEFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 A+++V ++ P N VE+LL P G V + K +VFTG L + Sbjct: 581 ARSVVHYFSLPANRTLVESLLSAGLEMAATEPEAG----PVDAFWNGKTVVFTGALSSMT 636 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R A GA VS +SRKTDI++ G +PGSK+EKA+QLG+ I++E +FL Sbjct: 637 RSNAAALTASRGARVSDSVSRKTDIVVAGADPGSKVEKARQLGITILDEREFL 689 >gi|167581473|ref|ZP_02374347.1| DNA ligase, NAD-dependent [Burkholderia thailandensis TXDOH] Length = 691 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 269/729 (36%), Positives = 408/729 (55%), Gaps = 59/729 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E S Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE+ V H P LSL ++ +D+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLVGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + +IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++ +++ + + R +LPYD Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C SRV R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S ++ I+ + D+ L Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGS-------LDPIMDASIDE---L 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE------VSPSIGRHEKNVSSEIENKKL 652 + V VG I+A++I +F+ N +E L + P R + V + K + Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGV---LAGKTV 620 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 621 VLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEA 680 Query: 713 QFLFLLQQY 721 LL+ + Sbjct: 681 GMHKLLEGH 689 >gi|89075460|ref|ZP_01161871.1| DNA ligase [Photobacterium sp. SKA34] gi|89048732|gb|EAR54303.1| DNA ligase [Photobacterium sp. SKA34] Length = 670 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 255/695 (36%), Positives = 405/695 (58%), Gaps = 49/695 (7%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 YH YY P I D+EYD + ++ I P+ + P+ ++GG +V Sbjct: 18 YHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTVDSPS---QRVGGAALEGFTQV 74 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H I LSL+ +N +DLR F R+ + + + + EPK+DG +++ YEKG V Sbjct: 75 KHEIAMLSLDNAFNDDDLRAFQKRLQD--RLRSGATFSYCCEPKLDGLAVSLMYEKGVLV 132 Query: 150 YAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 AA RGDG +GE+++ +R I IP ++ + PE +EVRGEV++ K F LN + + Sbjct: 133 QAATRGDGATGENITHNVRTIRAIPLKLQGDDWPERLEVRGEVFMPKKGFEELNAKALKK 192 Query: 209 GRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQKMRCLGF 266 G K +ANPRNAA+G LR+L+P TR L+F+ + +G A QYE L +++ G Sbjct: 193 GDKAFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVDGRELANTQYERLCQLKAWGL 252 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 P+ +R+ ++ +++Y+ + R +L Y+IDG+V KVD+ Q+QLG AR+PRW I Sbjct: 253 PMCPEIRKVDSIEEVIAYHQNIGEKRQSLGYEIDGVVIKVDDVDTQQQLGFVARAPRWAI 312 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++NATLHN D Sbjct: 313 AYKFPAQEEMTTLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNAD--------- 363 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 +V R G + +GD V+++RAG+VIP++ ++ + R +AQ FP+ CP+CQS+V R Sbjct: 364 EVARLG--VMIGDTVIIRRAGDVIPQIASVVESRRPANAQAIVFPTECPVCQSKVER--- 418 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 G+ VA RCTGGL C AQ+ E LKHFVSR A +++G G++ ++ E + Sbjct: 419 -IEGEAVA--RCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQLVDRE----MVTT 471 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 PAD+F + T ++ G S L D++N + +L RFI+SLGIR VG Sbjct: 472 PADLFKFSAGEVTVLERM------GPKSAQKLVDALNASKLTTLPRFIYSLGIREVGEAT 525 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 A +LA Y+ + ++ +Q + LI VP VG I+A I F++ N+ V Sbjct: 526 AANLANYFETLESISQATKD----------QLIEVPDVGGIVAAHIFNFFREEHNMVVVN 575 Query: 627 ALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 L+EV P I + +++V ++ K +V TG+L ++ R A+ + +LGA V+ +S+ Sbjct: 576 E-LQEVGIHWPEIEKIDEDVELPLDGKVVVLTGSLSQLTRSDAKAALQKLGAKVTGSVSK 634 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 KTD+++ G+ GSKL KAQ+LG++I +E++ + L+ Sbjct: 635 KTDLLVAGEAAGSKLTKAQELGIEIWDEQKLVDLM 669 >gi|241668131|ref|ZP_04755709.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876666|ref|ZP_05249376.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842687|gb|EET21101.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 678 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 268/716 (37%), Positives = 409/716 (57%), Gaps = 56/716 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L+ Q + + L + + Y+ KP+I DS+YD L R + P L S Sbjct: 12 KTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDLVDDNPQLKPS- 70 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 N L+++GG++ + H SL ++++E+LR F +I + I Sbjct: 71 --NSVLDRVGGDVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI--------EYDIELE 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVR 188 EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P L+ N PE +EVR Sbjct: 121 CEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVR 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247 GE+ + K FL+LN+ M K +ANPRNAA+G +R L+ + R L + +G+G S Sbjct: 181 GEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFS 240 Query: 248 EIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + F + Q+E++ ++ GF +++ + A F + Y+++M R+ L YDIDGLV+K Sbjct: 241 KDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGLVFK 300 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ LQ +G AR P+W I++KF ++ + +L+++ Q+GRTG +TPVARL+PV +GG Sbjct: 301 VNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGG 360 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV + R PDA Sbjct: 361 VIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVVKSLSEYRKPDA 409 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 Q P+ CP+C S + ++N + A +RCTGG C AQ ERLKHFVSR A +I+ Sbjct: 410 QMVEMPTNCPVCDS-TIENINDQ-----AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDK 463 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + ++ ++ I+ PADI+ L Q T ++ G S N+ DSI K Sbjct: 464 LGAKLIEQLVAAD----LIKYPADIYKLNFEQLTGLERM------GAKSSQNVLDSITKS 513 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + SL RFIF++GI+ VG + +LA ++ S ++F + + LI + +G Sbjct: 514 KEPSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------KFEQLIEINDIG 563 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQ 662 +IIA+ IV F+Q+ NI V+ LL S +I EK + E NK +V TGT + Sbjct: 564 EIIAKNIVSFWQDSLNIQIVDELLGN-SINIQNPEKIEQAHNESFTNKTIVITGTFENYN 622 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + +GA V++ +S+KTD++I GDN GSKL KAQ LGV+++ EE LL Sbjct: 623 RTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLIKAQDLGVEVIFEEDLQNLL 678 >gi|227328979|ref|ZP_03833003.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 684 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 258/718 (35%), Positives = 409/718 (56%), Gaps = 51/718 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E + A ++ L + + +H+ Y+ P I D EYD L + ++ A P+L S+ Sbjct: 7 EPAEVNVAALRVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKSLEAAHPELVTSD 66 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P ++G + +V H +P LSL+ +++ E F RI + DD + F Sbjct: 67 SPT---QRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDD--LTFC 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188 E K+DG +++ YE+G V AA RGDG +GE++++ IR + IP R+ NIP +EVR Sbjct: 122 CELKLDGLAVSLLYEEGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGDNIPRRVEVR 181 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-T 246 GEV++ + F LN+E G K +ANPRNAA+G LR+L+P TR L FF +G+G Sbjct: 182 GEVFMKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITATRPLTFFCYGVGLLE 241 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + +E L + + G PV++ ++ ++ +Y +++ RS+L +DIDG+V KV Sbjct: 242 GGVLPASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGFDIDGVVVKV 301 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D LQ++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 302 DSLELQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGV 361 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHN D I+ L +++GDRV+V+RAG+VIP++V I+ +ER + Sbjct: 362 IVSNATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVR 410 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ V RCT GL C AQ+ E LKHFVSR A ++EG+ Sbjct: 411 PILFPAACPVCGSDVER----VEGEAVT--RCTAGLICGAQRKEALKHFVSRRALDVEGM 464 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E ++ PAD+F L T ++ G S TNL +++ K + Sbjct: 465 GDKIIDQLVEKE----YVKTPADLFRLSAGIMTGLDRM------GPKSATNLVNALEKAK 514 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RF+++LGIR VG A +LA ++ S + + A + D +L+ VP VG Sbjct: 515 STTLARFLYALGIRDVGESTAANLAAHFGS-------LEALFAADED---ALLEVPDVGK 564 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQK 660 ++A + F + N + L +I E + + S K +V TG+L Sbjct: 565 VVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNVEEIDSPFAGKTVVLTGSLSI 624 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 625 LSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLL 682 >gi|88861394|ref|ZP_01136024.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2] gi|88816660|gb|EAR26485.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2] Length = 673 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 260/713 (36%), Positives = 416/713 (58%), Gaps = 48/713 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E ++++L+ ++ ++ YY P + DSEYD + R A+ +P ++ P+ Sbjct: 3 ESVLSQIAALKVQLEEYNYQYYVLDNPSVPDSEYDRVMRELIALETQYPQFLSADSPS-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K+GGE S +V H +P LSL+ ++ + R F R+ + KD ++ F EPK+ Sbjct: 61 -QKVGGEALGSFSQVQHLVPMLSLDNAFDETEFRSFNKRLQD--RLKDTTTLTFCCEPKL 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG ++I Y+ G V AA RGDG +GE+++ ++ I +P ++ +IP +EVRGEV++ Sbjct: 118 DGLAVSILYQDGVLVQAATRGDGQTGENITENVKTIRNVPLKLRGESIPHRLEVRGEVFM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEIF 250 F +N+ I K +ANPRNAA+G LR+L+ + IT R L F+ +G+G + Sbjct: 178 DSAGFAKMNELAIKNDGKVFANPRNAAAGSLRQLD-SKITAKRPLMFYAYGMGIIEGGVV 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + LQ + G P++ + ++YY ++ + RS L Y+IDG+V KV++ + Sbjct: 237 PDDHFAQLQALGDWGLPMSPETKLVTGVDDALAYYQDIMNRRSQLKYEIDGVVIKVNDKA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG AR+PRW I+ KF ++ T+LLD++ Q+GRTG +TPVARLEPV +GG ++N Sbjct: 297 LQQTLGFVARAPRWAIAFKFPAQEEMTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+D I+ L +++GD V+++RAG+VIP++ +++ ER DA+ F Sbjct: 357 ATLHNQDEIERL-----------GVKIGDTVIIRRAGDVIPQITQVVLAERKTDAKDIVF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+CQS+V R + G+ VA RC+GGL C AQ+ E +KHFVSR AF+I+G+G + Sbjct: 406 PSNCPVCQSKVERTV----GEAVA--RCSGGLVCGAQRKEAIKHFVSRKAFDIDGMGDKI 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E I PA+IFTL++ +E++ G S L +I + +L Sbjct: 460 VEQLVERE----LIHTPAEIFTLRQGH------LESLERMGPKSAEKLVAAIGNAKQTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF++SLGIR VG A +LA +YL+ ++ I+A + D SL V VG+I+A+ Sbjct: 510 ARFLYSLGIREVGEATALNLANHYLT-------LDAIMAASVD---SLQEVADVGEIVAK 559 Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 + F++ N V+AL+ ++ + + + V TGTL ++ R A+ Sbjct: 560 HVNFFFREAHNRAVVDALIAAGITWAALEPKSEAEQPLAGLTYVLTGTLLQMGRSDAKNR 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + LGA VS +S KTD ++ GD GSKL KAQ+LG+K++ E+ + LL QYN Sbjct: 620 LQALGAKVSGSVSAKTDALVAGDKAGSKLTKAQELGIKVLFEDDLIALLAQYN 672 >gi|323499974|ref|ZP_08104932.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326] gi|323314991|gb|EGA68044.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326] Length = 669 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 259/707 (36%), Positives = 399/707 (56%), Gaps = 49/707 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +++L+ L + + YH YY P I D+EYD L R + PDL + P+ + Sbjct: 6 QEKLNQLRETLHYHGVKYYVEDSPEIPDAEYDRLMRELMELESQHPDLMSLDSPS---QR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKIDG 136 +GG V H IP LSL+ ++ +L F R+ R K D F EPK+DG Sbjct: 63 VGGAALDGFGSVNHEIPMLSLDNAFDDAELESFNKRMADRIPSAKFD---VFCCEPKLDG 119 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 +++ YE G V AA RGDG +GE+++ +R I IP ++ PE IEVRGEV++ K Sbjct: 120 LAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLQGQGWPERIEVRGEVFMPK 179 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFAKG 253 F LN++ + G K + NPRNAA+G LR+L+ TR L+F+ + +G + Sbjct: 180 AGFDKLNEQALKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVQGATLSSS 239 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 YE +++ G P+ ++ + + +YY ++ R LPY+IDG+V KVD+ +LQ+ Sbjct: 240 HYERFLQLKGWGLPMCPETKRVSGLDEVKAYYQDILQRREALPYEIDGVVIKVDDIALQE 299 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NATL Sbjct: 300 QLGFVARAPRWAIAYKFPAQEELTTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 359 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L + +GD V+++RAG+VIP++V ++V+ R A+ FP+ Sbjct: 360 HNADEIERL-----------SVMIGDTVVIRRAGDVIPQIVSVVVDRRPDSAREIVFPAL 408 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+CQS+V R G+ VA RC+GGL C AQ+ E LKHFVSR A +++GLG++ ++ Sbjct: 409 CPVCQSQVER----IEGEAVA--RCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIEQ 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L S I + G S N+ D++N+ + +L RF Sbjct: 463 LVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALNQSKQTTLPRF 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 ++SLGIR VG A +LA+++ S Q + + LI V +G+I+A I Sbjct: 513 LYSLGIREVGEATAANLAQHFKSLQAVTKATHE----------ELIAVSDIGEIVASHIT 562 Query: 614 EFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N + LL++ P I +++ + K +V TG+L ++ R A+ + Sbjct: 563 AFFAQESNQQVIGQLLEQGINWPEIEERDESTPQPLAGKTVVLTGSLSQLSRSDAKAALQ 622 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V+ +S+KTDI+ G+N GSKL KAQ LGV+I E+ + L+ Sbjct: 623 DLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGVEIRTEQDLIDLI 669 >gi|197336238|ref|YP_002156719.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11] gi|254781450|sp|B5FGU7|DNLJ_VIBFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|197317728|gb|ACH67175.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11] Length = 668 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 261/714 (36%), Positives = 409/714 (57%), Gaps = 54/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +SIEQ L L+Q+++YH YY P + D+EYD + + +I P+L + P Sbjct: 1 MSIEQT---LDELKQQLNYHAYRYYVEDSPELPDAEYDRMMQELLSIESEHPELVTVDSP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GGE ++ H IP LSL+ ++ E+L F R+ K + F E Sbjct: 58 S---QRVGGEALDGFTQIQHEIPMLSLDNAFSDEELEAFEKRMNDRLISKPVS--LFCCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 PK+DG +++ Y GK V A RGDG +GE+++ +R I IP L P +EVRGE Sbjct: 113 PKLDGLAVSLLYVNGKLVQAGTRGDGTTGENITENVRTIRCIPLTLQGEGWPTRLEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTS 247 V++ K F ALN+ + G KP+ANPRNAA+G LR+L+ TR L+F+ + +G + Sbjct: 173 VFMPKAGFEALNERALKRGEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVIEGG 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ Y+ +++ G P+ +Q + + +YY ++ R L Y+IDG+V KVD Sbjct: 233 EL-ETSHYQRFVQLKSWGLPMCEETKQCYSLTEVKAYYKDILKRRDALKYEIDGVVIKVD 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG Sbjct: 292 DIALQEQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVGGVT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I L + +GD V+++RAG+VIP++V ++ R D++ Sbjct: 352 VSNATLHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPTDSKA 400 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +P+ CP+C S + R G+ V RC GL C AQ+ E LKHFVSR A +++GLG Sbjct: 401 IVYPTHCPVCGSNLER----VEGEAVT--RCGAGLVCQAQRKEALKHFVSRKALDVDGLG 454 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E + PAD+F L T ++ G S N+ D++NK + Sbjct: 455 DKVVEQLVDKE----MVETPADLFKLSAGVLTVLERM------GPKSAQNVVDALNKAKA 504 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF++SLGIR VG A +LA ++ + + A + LI V VGDI Sbjct: 505 TTLPRFLYSLGIREVGEATAANLAAHFYTLE----------AIQVATFEQLIEVSDVGDI 554 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 +A+ ++ F+ P N ++ L+E+ P I +++V + K +V TGTL K++R+ Sbjct: 555 VAKHVLNFFAEPHNKTVIDD-LQEMGIHWPEIKALDESVPQPLAGKVVVLTGTLHKLKRN 613 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ + +LGA V+ +S+KTDI+ G+ GSKL KA++LGV++MNEEQ + LL Sbjct: 614 EAKAALQELGAKVTGSVSKKTDILFAGEAAGSKLAKAEELGVEVMNEEQLIELL 667 >gi|167619582|ref|ZP_02388213.1| DNA ligase, NAD-dependent [Burkholderia thailandensis Bt4] Length = 691 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 268/729 (36%), Positives = 408/729 (55%), Gaps = 59/729 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E S Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE+ V H P LSL ++ +D+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + +IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +++VRGEV + + DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRMLDVRGEVLMFRRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++ +++ + + R +LPYD Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C SRV R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S ++ I+ + D+ L Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGS-------LDPIMDASIDE---L 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE------VSPSIGRHEKNVSSEIENKKL 652 + V VG I+A++I +F+ N +E L + P R + V + K + Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGV---LAGKTV 620 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 621 VLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEA 680 Query: 713 QFLFLLQQY 721 LL+ + Sbjct: 681 GMHKLLEGH 689 >gi|261868202|ref|YP_003256124.1| NAD-dependent DNA ligase LigA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413534|gb|ACX82905.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans D11S-1] Length = 670 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 264/708 (37%), Positives = 412/708 (58%), Gaps = 58/708 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L + + +H+ Y+ P I DSEYD L + A+ P+L ++ P + Sbjct: 6 QQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTADSPT---QR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ H IP LSL+ ++ E+ F+ RI + + F EPK+DG Sbjct: 63 VGARPLSEFAQIRHEIPMLSLDNAFSNEEFFSFVKRIQDRLALVPE-PLTFCCEPKLDGL 121 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 ++I Y G AA RGDG +GED++ IR I IP ++L+ N P +EVRGEV++ Sbjct: 122 AVSILYVNGVLSQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPHA 181 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTSEIFAKG 253 F LN+ + G K +ANPRNAA+G LR+L+P ++ LN + G+ + E+ Sbjct: 182 GFERLNERALEHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVEL-PPT 240 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E LQ ++ +G PVNN ++ + ++++Y + + RS+L YDIDG V K+++ +LQ+ Sbjct: 241 HFERLQWLKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQQ 300 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +++PRW I++KF ++ TRLLD++ QIGRTG +TPVA+LEPV++GG ++NATL Sbjct: 301 RLGFISKAPRWAIAYKFPAEEVRTRLLDVEFQIGRTGAVTPVAKLEPVSVGGVTVSNATL 360 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D IK L I +GD VL++RAG+VIP+V+ +V++ +P FP+ Sbjct: 361 HNNDEIKRL-----------GISIGDIVLIRRAGDVIPQVIK-LVHKAKKGNKPIVFPTH 408 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S ++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+ +G + ++ Sbjct: 409 CPVCDSLIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDSVGGKLIEQ 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E I PAD+F L T+ T++E + G S N S+ K +N +L RF Sbjct: 463 LVDRE----LIHTPADLFKLDL---TTLTRLERM---GPKSAENALASLEKAKNTTLARF 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG A +LA ++ + + A N D L +VP VG+++A I Sbjct: 513 IFALGIRDVGEATALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVVANRIF 562 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKIQRHKAQ 667 F++ N+ VE L+ + G H + V + + K +V TGTL ++ R+ A+ Sbjct: 563 VFWREAHNVAVVEDLIAQ-----GVHWETVDVQEVKENPFKGKTVVLTGTLSQMGRNDAK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + QLGA VS +S KTD +I G+ GSKL KA +LGV++++EE+FL Sbjct: 618 ALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFL 665 >gi|330817444|ref|YP_004361149.1| DNA ligase [Burkholderia gladioli BSR3] gi|327369837|gb|AEA61193.1| DNA ligase [Burkholderia gladioli BSR3] Length = 691 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 268/727 (36%), Positives = 400/727 (55%), Gaps = 60/727 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + Q + + L E+ + YY +P + D+EYD L R I PDL Sbjct: 5 PVEPPA-SQPSERAAWLRNELERANHAYYVLDQPDLPDAEYDRLFRELQQIEAEHPDLI- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--- 124 P+ P ++GGE V H P LSL ++ ED+ F R+ K + Sbjct: 63 --TPDSPTQRVGGEAATGFTPVVHDAPMLSLNNGFSDEDIAAFDKRVADALDKAPADLAG 120 Query: 125 ----SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179 + + E K DG I++RYE G+FV AA RGDG +GEDV+ +R I +IP L Sbjct: 121 TAIDPVEYACELKFDGLAISLRYEHGRFVQAATRGDGTTGEDVTENVRTIRSIPLTLKGK 180 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLN 237 N P +++VRGEV + K DF LN ++ +ANPRNAA+G LR+L+ + IT R L+ Sbjct: 181 NPPALLDVRGEVLMYKRDFARLNQRQREAEQREFANPRNAAAGSLRQLD-SKITAQRPLS 239 Query: 238 FFVHGLGK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 FF +G+G +L G PVN G++++++++ R LP Sbjct: 240 FFAYGIGVLEGATMPDTHSGLLDWYAGFGLPVNRERAVVKGAEGLLAFFHKVGEQREALP 299 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 YDIDG+VYKV+ Q++LG +R+PR+ ++HKF ++A TRLL I++Q+GRTG +TPVA Sbjct: 300 YDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTRLLAIEVQVGRTGAITPVA 359 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 RLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV Sbjct: 360 RLEPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSA 408 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 +++ R DA F P+ CP+C SR+ R P+ A RCTGGL C AQ+ + L HF Sbjct: 409 LLDRRPADAAEFVMPTECPVCGSRIER--LPEE----AIARCTGGLFCPAQRKQALWHFA 462 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 R A +I+GLG++ +D + +R PAD+F L + + F D S Sbjct: 463 QRRALDIDGLGEKIIDQLVEQN----LVRTPADLFHL------GFATLAALDRFADKSAQ 512 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL DS+ K R+ +L RFI++LGIRHVG A+ LAK++ S Q + ND Sbjct: 513 NLLDSLEKARHTTLGRFIYALGIRHVGESTAKDLAKHFGSLQPIMDATTEQLLEVND--- 569 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKL 652 VG ++A+++ +F+ N + L ++V P R + V + K + Sbjct: 570 -------VGPVVAESLHQFFAEEHNRTVIAQLREKVDWPEGPPAPREPQGV---LAGKTV 619 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL + R +A+ + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ Sbjct: 620 VLTGTLPTLGRDEAKALLEAAGAKVTGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDED 679 Query: 713 QFLFLLQ 719 LL+ Sbjct: 680 GMHLLLK 686 >gi|167837047|ref|ZP_02463930.1| DNA ligase, NAD-dependent [Burkholderia thailandensis MSMB43] Length = 691 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 267/729 (36%), Positives = 410/729 (56%), Gaps = 59/729 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQQIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE+ V H P LSL ++ +D+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEVAGGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + +IP L + Sbjct: 121 VTEPVEYACELKFDGLAISLRYEGGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGRH 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + G + +L LG PVN G++ +++ + R +LPYD Sbjct: 241 AYGIGVLDGVEMPGTHSGLLDWYETLGLPVNRERAVVRGAAGLLGFFHSVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C SR+ R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S ++ ++ + D+ L Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGS-------LDPVMDASIDE---L 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE------VSPSIGRHEKNVSSEIENKKL 652 + V VG I+A++I +F+ N +E L + P R + V + K + Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAKGKVTWPEGPPAPRAPQGV---LAGKTV 620 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 621 VLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEA 680 Query: 713 QFLFLLQQY 721 LL+ + Sbjct: 681 GMHKLLEGH 689 >gi|170692136|ref|ZP_02883299.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M] gi|170142566|gb|EDT10731.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M] Length = 693 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 264/705 (37%), Positives = 395/705 (56%), Gaps = 49/705 (6%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ + YY +P + D+EYD L + ++I PDL P+ P ++GGE Sbjct: 26 LRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAEHPDLIV---PDSPTQRVGGEAA 82 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW---QKKDDNSIFFTLEPKIDGTMIT 140 V H P LSL + ED+ F R+ K+ + + E K DG I+ Sbjct: 83 SGFEPVVHDQPMLSLNNGFADEDIIAFDKRVGDALGNNAKEPPVPVDYATELKFDGLAIS 142 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 +RY G FV AA RGDG +GE+V+ IR + +IP R+ +P I++VRGEV + K DF Sbjct: 143 LRYVDGVFVQAATRGDGATGENVTENIRTVRSIPLRLKGKRVPHILDVRGEVLMFKRDFE 202 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY-EM 257 LN+ A G K +ANPRNAA+G LR+L+P R L+FF +G+G I + E+ Sbjct: 203 RLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGIEMPATHSEL 262 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L + LG PVN+ G++++++ + R LPYDIDG+VYKV+ Q+ LG Sbjct: 263 LDWYKELGLPVNSERAVVKGAEGLLAFFHAVGEKRDKLPYDIDGVVYKVNRRDEQEALGF 322 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLHNED Sbjct: 323 VSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNED 382 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA+ F P+ CP+C Sbjct: 383 EVR-----------RKDIRIGDTVIVRRAGDVIPEVVSALIDRRPDDAREFVMPTHCPVC 431 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S + R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D + Sbjct: 432 GSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQ 485 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 +R PAD+F L + + + F D S NL DS+ K R+ +L RFI++L Sbjct: 486 N----LVRTPADLFNL------GFSTLAQLDRFADKSAQNLLDSLEKARHTTLSRFIYAL 535 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG A+ LAK++ S + + ND VG ++A++I +F+ Sbjct: 536 GIRHVGESTAKDLAKHFGSLDPIMEASVEALLEVND----------VGPVVAESIHQFFA 585 Query: 618 NPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 N +E L K P + + K +V TGTL + R +A+E + G Sbjct: 586 EEHNRTVIEQLRAHGKVTWPEGPPAPRAPQGVLAGKTIVLTGTLPNLAREEAKEMLEAAG 645 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 646 AKVAGSVSKKTDYVVAGAEAGSKLVKAEELGIPVLDEDGMRKLLE 690 >gi|83720010|ref|YP_442546.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264] gi|257138755|ref|ZP_05587017.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264] gi|123753789|sp|Q2SX03|DNLJ_BURTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83653835|gb|ABC37898.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264] Length = 691 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 268/729 (36%), Positives = 407/729 (55%), Gaps = 59/729 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E S Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE+ V H P LSL ++ +D+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + +IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +++VRGEV + + DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRMLDVRGEVLMFRRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++ +++ + + R +LPYD Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV + Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVF 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C SRV R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S ++ I+ + D+ L Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGS-------LDPIMDASIDE---L 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE------VSPSIGRHEKNVSSEIENKKL 652 + V VG I+A++I +F+ N +E L + P R + V + K + Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGV---LAGKTV 620 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 621 VLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEA 680 Query: 713 QFLFLLQQY 721 LL+ + Sbjct: 681 GMHKLLEGH 689 >gi|170727191|ref|YP_001761217.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908] gi|254781418|sp|B1KJT5|DNLJ_SHEWM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169812538|gb|ACA87122.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908] Length = 670 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 268/711 (37%), Positives = 393/711 (55%), Gaps = 54/711 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 A +E+ L + I+ H+ YY P + D+EYD L R + P L P P Sbjct: 2 HAIEEIKQLTETINEHNHSYYVEDSPSVPDAEYDRLINRLKQLEGENPHLCL---PTSPT 58 Query: 76 NKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG M L+ F ++TH P LSL+ +++ E+ F RI K + F EPK+ Sbjct: 59 QRVGG-MALAKFDQITHLKPMLSLDNVFSEEEFEAFYKRI----SDKTSEAPTFCCEPKL 113 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG ++I Y G + AA RGDG +GED+S +R I +IP ++ N P ++EVRGEV + Sbjct: 114 DGLAVSILYRDGVYERAATRGDGTTGEDISENVRTILSIPLKLRGDNFPPLLEVRGEVIM 173 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTSEI 249 K F ALND A G K + NPRNAA+G LR+L+ +R L F+ + LG + Sbjct: 174 PKKAFDALNDRARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETWA 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A Y+ L ++R GFPV+ V+Q +V+YY ++ + R +L Y+IDG+V KVD Sbjct: 234 LADTHYDQLMQLRAWGFPVSAEVKQCGDVSSVVAYYTDIMTRRDSLDYEIDGVVIKVDSI 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q QLG A++PRW + KF ++ T L +D Q+GRTG +TPVARL+PV +GG ++ Sbjct: 294 EHQGQLGFVAKAPRWATAFKFPAQEEVTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVS 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I L ++VGD V+V+RAG+VIP++V I+ ++R DA+ Sbjct: 354 NATLHNADEIARL-----------GVKVGDTVIVRRAGDVIPQIVAIVADKRPDDAREIE 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP+C S V R G+ VA RCTGGL C AQ+ E +KHF SR A +I+G+G + Sbjct: 403 FPDTCPVCNSMVER----VEGEAVA--RCTGGLFCEAQRKEAIKHFASRKALDIDGMGDK 456 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E + PAD+F L + + I + G S TNL +I + + Sbjct: 457 VVEQLIDKE----LVESPADLFKL------TASAITMLDRMGMKSATNLVAAIEVAKTTT 506 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF++ LGIR VG A +LA Y+ + D S I+V VG I+A Sbjct: 507 FSRFLYGLGIREVGEATAANLANYFKTLDKLKAA----------DAESFIKVDDVGTIVA 556 Query: 610 QAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 Q + F+ P N+ V+ L++ P I + S ++ + V TGTL ++ R+ A+ Sbjct: 557 QHLTHFFAQPHNLEVVDKLIEAGVNWPEIEEVAEE-SLSLKGQTWVLTGTLTQLNRNDAK 615 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+ TD ++ G+ GSKL KAQ LGVK+++EE L LL Sbjct: 616 ARLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQDLGVKVIDEEALLQLL 666 >gi|56416472|ref|YP_153546.1| DNA ligase [Anaplasma marginale str. St. Maries] gi|81359291|sp|Q5PBN8|DNLJ_ANAMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56387704|gb|AAV86291.1| DNA ligase [Anaplasma marginale str. St. Maries] Length = 673 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 264/713 (37%), Positives = 406/713 (56%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQAR+ L+ L ++ +HD Y+ P + D +YD L + + FPD+++ +D Sbjct: 2 LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDISQYDDY-- 59 Query: 74 PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 + +G S F KV H P LSLE + ++D+ KFITR+ RF + + D+ + + E Sbjct: 60 -ADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + Y GK A RG+GH GED++ + +P L + PE++EVRGE+Y Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQLD-SAPEVLEVRGEIY 177 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + DF L G +ANPRNAA+G +R+LN I N + FA Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLN-QKIVEERNLSYVAYSAVNSTFAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E+L+++ GF N V + +++YN + + RS L YDIDG+VYKV+ + Q Sbjct: 231 -QQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSTNFQ 289 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K LG +SPRW I+HKF +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A+ Sbjct: 290 KLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRAS 349 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN + I+ +D+R+GD V+VKRAGEVIP+VVD+ R Q F FPS Sbjct: 350 LHNLNEIE-----------RKDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPS 398 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S++ R+ G++ A RC L+C AQ LER+KHFVSRD NI GLG +Q++ Sbjct: 399 HCPSCGSKLHRE----PGEV--ALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQIE 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF I ADIF+L+ + E+ G+G+ SV NL +I + L Sbjct: 453 FFCNHG----LIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLSN 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR +G A+ +A++Y SY+N+ Q + + ++ +++ +G+ ++ Sbjct: 507 FIFALGIRFIGVGAAKLVAEHYRSYKNWHQAMLALTETHDT-----VQIRGLGEKSISSL 561 Query: 613 VEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 F+ N+ +E+L L E SP+ + SS I K +VFTGTL+ + R +A Sbjct: 562 KAFFSVQGNLEVLESLSAKLNILDEASPA-----QRGSSAISGKTVVFTGTLESMSRTEA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S T +++ G NPGSK EKA L V++++E+ ++ +++ Sbjct: 617 KLQAESLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVE 669 >gi|222474841|ref|YP_002563256.1| DNA ligase (ligA) [Anaplasma marginale str. Florida] gi|255003944|ref|ZP_05278745.1| DNA ligase (ligA) [Anaplasma marginale str. Virginia] gi|254781539|sp|B9KHN8|DNLJ_ANAMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222418977|gb|ACM49000.1| DNA ligase (ligA) [Anaplasma marginale str. Florida] Length = 673 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 263/713 (36%), Positives = 402/713 (56%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQAR+ L+ L ++ +HD Y+ P + D +YD L + + FPD+ + +D Sbjct: 2 LEQARRRLAGLNAKLRHHDMLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDIRQYDDY-- 59 Query: 74 PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 + +G S F KV H P LSLE + ++D+ KFITR+ RF + + D+ + + E Sbjct: 60 -ADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + Y GK A RG+GH GED++ + +P L + PE++EVRGE+Y Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQLD-SAPEVLEVRGEIY 177 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + DF L G +ANPRNAA+G +R+LN I N + FA Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLN-QKIVEERNLSYVAYSAVNSTFAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E+L+++ GF N V + +++YN + + RS L YDIDG+VYKV+ + Q Sbjct: 231 -QQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSINFQ 289 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K LG +SPRW I+HKF +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A+ Sbjct: 290 KLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRAS 349 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN + I+ +D+R+GD V+VKRAGEVIP+VVD+ R Q F FPS Sbjct: 350 LHNLNEIE-----------RKDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPS 398 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S++ R+ A RC L+C AQ LER+KHFVSRD NI GLG +Q++ Sbjct: 399 HCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQIE 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF I ADIF+L+ + E+ G+G+ SV NL +I + L Sbjct: 453 FFCNHG----LIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLSN 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LGIR +G A+ +A++Y SY+N+ Q + + ++ +++ +G+ ++ Sbjct: 507 FIFALGIRFIGVGAAKLIAEHYRSYKNWHQAMLALTETHDT-----VQIRGLGEKSISSL 561 Query: 613 VEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 F+ N+ +E+L L E SP+ + SS I K +VFTGTL+ + R +A Sbjct: 562 KAFFSVQGNLEVLESLSAKLNILDEASPA-----QRGSSAISGKTVVFTGTLESMSRTEA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S T +++ G NPGSK EKA L V++++E+ ++ +++ Sbjct: 617 KLQAESLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVE 669 >gi|269959115|ref|YP_003328904.1| NAD-dependent DNA ligase [Anaplasma centrale str. Israel] gi|269848946|gb|ACZ49590.1| NAD-dependent DNA ligase [Anaplasma centrale str. Israel] Length = 673 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 264/714 (36%), Positives = 406/714 (56%), Gaps = 54/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQAR+ L+ L ++ +HD Y+ P + D +YD L + + FPD+ + +D Sbjct: 2 LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDIRQYDDY-- 59 Query: 74 PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 + +G S F KV H P LSLE + ++D+ KFITR+ RF + + D+ + + E Sbjct: 60 -ADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + Y GK A RG+GH GED++ + +P L + PE++EVRGE+Y Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQLD-SAPEVLEVRGEIY 177 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + DF L G +ANPRNAA+G +R+LN + R L++ + + FA Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLNQKIVEERNLSYVAYS--AVNSTFA 229 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E+L+++ GF N V + V++YN + + RS L YDIDG+VYKV+ + Sbjct: 230 T-QQEILKQLDEWGFHTNKQVLFTDKIEEAVAFYNSVYTTRSALGYDIDGVVYKVNSINF 288 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 QK LG +SPRW I+HKF +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A Sbjct: 289 QKLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRA 348 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN + I+ +D+R+GD V+VKRAGEVIP+VVD+ R Q F FP Sbjct: 349 SLHNLNEIE-----------RKDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFP 397 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S CP C S++ R+ A RC L+C AQ LER+KHFVSRD NI GLG +Q+ Sbjct: 398 SHCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQI 451 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +FF I ADIF+L+ + E+ G+G+ SV NL +I + L Sbjct: 452 EFFSNHG----LINGIADIFSLEEKLHGINLGTEH--GWGEKSVANLIAAIRNSATVRLS 505 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 FIF+LGIR +G A+ +A++Y SY+N+ Q + + ++ +++ +G+ + Sbjct: 506 NFIFALGIRFIGVGAAKLVAEHYRSYKNWHQAMLALTETHDT-----VQIRGLGEKSISS 560 Query: 612 IVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N+ +E+L L E SP+ + SS I K +VFTGTL+ + R + Sbjct: 561 LKAFFSVQGNLEVLESLSAKLNILDEASPA-----QRGSSAISGKTVVFTGTLESMSRTE 615 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+ LGA V+ +S T +++ G NPGSK EKA L V++++E+ ++ +++ Sbjct: 616 AKLQAESLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVIDEQTWVKMVE 669 >gi|148263373|ref|YP_001230079.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4] gi|190359259|sp|A5GA98|DNLJ_GEOUR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146396873|gb|ABQ25506.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4] Length = 672 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 268/708 (37%), Positives = 396/708 (55%), Gaps = 48/708 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A + + L +EI+ H+ YY +P I D+EYD L R + A+PDL ++ P Sbjct: 4 QAAERRIQELHKEINRHNYLYYVEDRPEINDAEYDLLLRELQQLEKAYPDLVTADSPT-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G +VTH +P LSLE +N E++ F RI RF + I + EPK+ Sbjct: 62 -QRVGAAPLEKFSQVTHRMPMLSLENAFNEEEMHDFDERIKRFLGLAAGDEIEYVCEPKM 120 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEVYI 193 DG + + YE G F + RGDG+ GEDV+ +R + TIP L++ P + EVRGEVY+ Sbjct: 121 DGLAVELVYENGDFTVGSTRGDGYVGEDVTQNLRTVKTIPLSLAIATPPRLFEVRGEVYL 180 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251 F LN E G P+ANPRNAA+G LR+L+ + IT R L+ F + G Sbjct: 181 GLAPFQKLNVEREEAGDPPFANPRNAAAGSLRQLD-SRITARRPLSIFCYAAGSLEGHEF 239 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q ++L + G PVN +R+ + G+++YY+EM R +LPY+IDG+V KVD F L Sbjct: 240 TSQSDLLNTIPGWGLPVNPLIRKVSGIGGVLAYYHEMSEKRESLPYEIDGVVVKVDSFDL 299 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LGE+ RSPRW I+ KF +QA T + +I Q+GRTG++TPVA L PV + G +++ A Sbjct: 300 QRELGEKTRSPRWAIAWKFPPRQAVTVVEEIVPQVGRTGVITPVAHLRPVEVSGVMVSRA 359 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN + ++ +DIR GD V+V+RAG+VIP VV +I +R D QP P Sbjct: 360 TLHNWEEME-----------KKDIRKGDTVVVERAGDVIPAVVKVITEKRKGDEQPLPIP 408 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S VV+ G++ A RC GL+C AQ E + HF SR A +I+G+G + + Sbjct: 409 ANCPECGSEVVK----IPGEV--AVRCL-GLSCPAQIRETIIHFASRHAMDIDGMGDKYI 461 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + K ++ AD++ L++ ++ GD NL +I + L Sbjct: 462 EQLLK----LGLVKNVADLYYLKKDDFMRFERM------GDKLAENLLGAIETSKQRELS 511 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI++LGIRHVG A+ LA + S +N + H +++ L IR VG +AQ+ Sbjct: 512 RFIYALGIRHVGEHTAKLLANAFGSMEN--------LEHASEEELLSIRE--VGPQVAQS 561 Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I F+ N NI ++ + V PS+ EK V K VFTG L + R A+ V Sbjct: 562 IRTFFHNRNNIEVIDRMFNAGVKPSV--EEKRVGGRFTGKTFVFTGALTRFTRDDAKRMV 619 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G + +S+KTD ++ G GSKL+KA+QLGVK++ E++FL +L Sbjct: 620 ENEGGHAAGSVSKKTDFVVAGAEAGSKLDKARQLGVKVLTEDEFLAML 667 >gi|227114832|ref|ZP_03828488.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 684 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 260/719 (36%), Positives = 410/719 (57%), Gaps = 53/719 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E + A ++ L + + +H+ Y+ P I D EYD L + A+ P+L S+ Sbjct: 7 EPAEVNAAALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTSD 66 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P ++G + +V H +P LSL+ +++ E F RI + DD + F Sbjct: 67 SPT---QRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDD--LTFC 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188 E K+DG +++ YE G V AA RGDG +GE++++ IR + IP R+ NIP +EVR Sbjct: 122 CELKLDGLAVSLLYENGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGDNIPRRVEVR 181 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--K 245 GEV++ + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 182 GEVFMKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLE 241 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 E+ A +E L + + G PV++ ++ ++ +Y +++ RS+L +DIDG+V K Sbjct: 242 GGELPAS-HWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGFDIDGVVVK 300 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD LQ++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 301 VDSLELQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAG 360 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHN D I+ L +++GDRV+V+RAG+VIP++V I+ +ER Sbjct: 361 VIVSNATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETV 409 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +P FP+ CP+C S V R G+ V RCTGGL C AQ+ E LKHFVSR A ++EG Sbjct: 410 RPIVFPAACPVCGSDVER----VEGEAVT--RCTGGLICGAQRKEALKHFVSRRALDVEG 463 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + +D + E ++ PAD+F L T ++ G S TNL +++ K Sbjct: 464 MGDKIIDQLVEKE----YVKTPADLFRLSAGIMTGLDRM------GPKSATNLVNALEKA 513 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +L RF+++LGIR VG A +LA ++ S + + A + D +L+ VP VG Sbjct: 514 KSTTLARFLYALGIRDVGESTAANLAAHFGS-------LEALFAADED---ALLEVPDVG 563 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQ 659 ++A + F + N + L +I E + + S K +V TG+L Sbjct: 564 KVVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNAEEIDSPFAGKTVVLTGSLS 623 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 624 ILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLL 682 >gi|290476106|ref|YP_003469005.1| DNA ligase [Xenorhabdus bovienii SS-2004] gi|289175438|emb|CBJ82241.1| DNA ligase [Xenorhabdus bovienii SS-2004] Length = 672 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 253/715 (35%), Positives = 410/715 (57%), Gaps = 51/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L R + P+L ++ P Sbjct: 1 MESIIEKINKLRATLRHHEYLYHVMDAPEIPDAEYDRLLRELKVLEEQHPELITADSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H IP LSL+ +++ E F R+ + KD + F E K Sbjct: 60 --QRVGAAPLTAFGQVRHEIPMLSLDNVFDEESYLAFDKRVRD--RLKDSRDLVFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++ +R I IP R+ NIP +E+RGEV+ Sbjct: 116 LDGLAVSLLYEDGELVQAATRGDGTTGENITVNVRTIHAIPLRLKGNNIPARVEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F LNDE G K +ANPRNAA+G LR+L+P R L F+ +G+G + E+ Sbjct: 176 MKQGGFEKLNDEARRKGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A YE L + + G PV++ V+ ++ +Y+ ++ R L +DIDG+V KVD Sbjct: 236 PAS-HYERLMQFKQWGLPVSDNVKLCQGTQQVIDFYHNIEQQRPILGFDIDGIVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+ LG A++PRW + KFA ++ T + D++ Q+GRTG +TPVARL+PV + G +++ Sbjct: 295 ELQETLGFVAKAPRWATAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLKPVQVAGVIVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD V+++RAG+VIPKVV ++ ++R ++Q Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVVIRRAGDVIPKVVGVVQDKRPAESQEVI 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP +CP+C+S D+ G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G++ Sbjct: 404 FPEYCPVCRS----DIERVEGESVA--RCTGGLFCGAQRKEALKHFVSRRAMDVDGMGEK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E ++ PAD+F L S K+ + G S N D++ K + + Sbjct: 458 IIEQLVDKE----YVKTPADLFRL------SAGKLTGLERMGPKSAQNTIDALEKSKKTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RFI+SLGIR VG A +L ++++ + D +LI V VG ++A Sbjct: 508 FARFIYSLGIREVGEATAANLVAHFVTLEKL----------RAADTEALIAVQDVGGVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHK 665 +V F+ P N ++ L+ + S+ + + V + K +V TG+L ++ R + Sbjct: 558 SHVVNFFNEPHNQTVIDDLIDNIGIYWESVETLQSDTVGNSFAGKTVVLTGSLNRLSRDE 617 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ +T LGA V+ +S+KTD++I G+ GSKL KA +LG+++++EE+ L LL + Sbjct: 618 AKDKLTALGAKVTGSVSKKTDLVIAGEAAGSKLAKATELGIEVIDEEEMLRLLGE 672 >gi|242238286|ref|YP_002986467.1| NAD-dependent DNA ligase LigA [Dickeya dadantii Ech703] gi|242130343|gb|ACS84645.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech703] Length = 684 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 262/732 (35%), Positives = 418/732 (57%), Gaps = 60/732 (8%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +++ +P+ S A ++ +L ++ YH+ Y+ P I D+EYD L + Sbjct: 1 MSEKKPMPMNDTS--AAAVQIDALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKLLEQ 58 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 A P+ S+ P ++G V H +P LSL+ +++ E + F+ RI + Sbjct: 59 AHPEWVTSDSPT---QRVGATPLAGFDNVQHEVPMLSLDNVFDAESFQAFVKRIGD--RL 113 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSL 179 K D ++ F E K+DG +++ YE G V AA RGDG +GE++++ IR I IP R+ Sbjct: 114 KSDEALRFCCELKLDGLAVSLLYEDGVLVRAATRGDGSTGENITSNIRTIGAIPLRLRGD 173 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNF 238 NIP +EVRGEV++ F ALN+E G K +ANPRNAA+G LR+L+P R L F Sbjct: 174 NIPRRLEVRGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTF 233 Query: 239 FVHGLG-KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F +G+G ++ L + R G PV++ +R ++++Y ++++R TL + Sbjct: 234 FCYGVGLMEGGSLPDSHWQRLMQFREWGLPVSDRIRLCTGGDEVLAFYQHVEAVRDTLGF 293 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+V KVD+ +LQ++LG AR+PRW ++ KF ++ T L D++ Q+GRTG +TPVAR Sbjct: 294 DIDGVVIKVDDLALQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVAR 353 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV + G +++NATLHN D I L I++GDRV V+RAG+VIP++V ++ Sbjct: 354 LEPVAVAGVIVSNATLHNADEIDRL-----------GIQIGDRVAVRRAGDVIPQIVSVV 402 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R DA+P FP+ CP+C S V R G++V RCTGGL C+AQ+ E LKHFVS Sbjct: 403 LPDRPADARPVVFPTQCPVCGSDVER----VDGEVVT--RCTGGLFCAAQRKEALKHFVS 456 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A ++EG+G + +D + E ++ PA++F R T++E + G S N Sbjct: 457 RRALDVEGMGDKIIDQLVEKE----YVKTPAELF---RLDIGILTRLERM---GPKSAQN 506 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L ++++K ++ + RF+++LGIR VG A LA ++ + A D + Sbjct: 507 LVNALDKAKSTTFARFLYALGIRDVGEATAAGLAAHF----------GTLDALMTADVDT 556 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKN--------VSSEIE 648 L +VP VG ++A + F N + +++E + P +G + + + Sbjct: 557 LQQVPDVGIVVATHVRHFLDEEHN----QQIIRELIGPEVGLRWPDPVVVDAGALDNPFA 612 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TG+L + R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ LG+ + Sbjct: 613 GKTVVLTGSLSLLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQALGIDV 672 Query: 709 MNEEQFLFLLQQ 720 ++E + + LL Q Sbjct: 673 IDEVEMMRLLGQ 684 >gi|332184463|gb|AEE26717.1| DNA ligase [Francisella cf. novicida 3523] Length = 678 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 270/728 (37%), Positives = 410/728 (56%), Gaps = 65/728 (8%) Query: 6 LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 + P E SI+ A+ EL + L +S Y+ KPII DS+YD L R + Sbjct: 1 MTPNEFFSIKYHILAKPELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 P + N L+++GGE+ + H SL ++ IE+LR F +I Sbjct: 61 VDDNPQFKPT---NSVLDRVGGEVLAGFETIKHKKKMTSLVNVFTIEELRDFYDKI---- 113 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL- 177 + I EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P L Sbjct: 114 ----EYEIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169 Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236 ++N PE +EVRGE+ + K FL+LN+ M K +ANPRNAA+G +R L+ + R L Sbjct: 170 TINPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229 Query: 237 NFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 F +G+G S+ F + Q+E++Q +R GF +++ + A +F + Y+ +M R+ Sbjct: 230 KLFSYGIGYFSKDFVHPETQFELMQLLRSFGFTISDNMFLAKSFSEVEEYHRKMSHQRAD 289 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDGLV+KV+ LQ +G AR P+W +++KF ++ + +L+++ Q+GRTG +TP Sbjct: 290 LAYDIDGLVFKVNNIKLQDTIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITP 349 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +++NATLHN + IK +DIRV DRV+V+RAG+VIP+VV Sbjct: 350 VARLKPVAVGGVMVSNATLHNINEIK-----------RKDIRVSDRVIVRRAGDVIPEVV 398 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + R PDAQ P CP+C S + ++N + A +RCTGG C AQ ERLKH Sbjct: 399 KSLPQYRKPDAQIVEMPKNCPVCDS-TIENINDQ-----AIYRCTGGWHCQAQTTERLKH 452 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSR A +I+ LG + ++ ++ I+ PADI+ L Q T ++ G S Sbjct: 453 FVSRKAMDIDKLGAKLIEQLVAAD----LIKYPADIYKLNFEQLTGLKRM------GAKS 502 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 N+ DSI K + SL RFIF++GI+ +G + +LA ++ S ++F + Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSEALANHFGSLESFREA----------K 552 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENK 650 + LI + +G+I+A IV F+Q+ NI V+ LL +P + E+ + NK Sbjct: 553 FEQLIEINDIGEIMANNIVSFWQDSLNIQIVDELLANAINIQNPE--KIEQAHNESFTNK 610 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TGT + R + + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV ++ Sbjct: 611 TVVITGTFENYNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVTVIL 670 Query: 711 EEQFLFLL 718 E+ LL Sbjct: 671 EQDLQNLL 678 >gi|308271402|emb|CBX28010.1| DNA ligase [uncultured Desulfobacterium sp.] Length = 674 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 260/708 (36%), Positives = 411/708 (58%), Gaps = 52/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K++ +L+ E+ H+ YY P I D++YD + + + +P L+ P+ P K+ Sbjct: 11 KKVENLKSELQKHNYHYYVMDDPQISDTQYDKMMQELIELEAKYPMLST---PDSPSMKV 67 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G E ++ HS+ LSL+ ++ D+ F R+ D I +T EPK+DG Sbjct: 68 GAEPVKKFEQIRHSVKMLSLDNAFSDSDILNFDRRVKEGLMA--DEQILYTAEPKMDGVA 125 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGEVYI 193 + + Y+ G+ V A+ RGDG +GED+++ ++ I ++P +L N IP +E RGEV I Sbjct: 126 VELVYKDGRLVSASTRGDGETGEDITSNVKTIRSVPLLLQQNKKEHIIPARLEARGEVII 185 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 SK F LN++M++ G +ANPRNAA+G LR+L+ R L + +G+G+ I K Sbjct: 186 SKEGFKRLNEDMLSQGLALFANPRNAAAGSLRQLDSKVTAKRPLEIYFYGVGEVEGISCK 245 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++ L ++ LG +N ++ + + YY E++ +RS LPYDIDG+V KVD Q Sbjct: 246 SHWDWLYALKELGLRINPYIKPKININAVCKYYKELEQMRSGLPYDIDGMVVKVDSVQYQ 305 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG +ARSPRW +++KF Q +T++LDI +Q+GRTG +TPVA LE VNIGG ++ AT Sbjct: 306 EQLGTKARSPRWAVAYKFKAIQETTKVLDILVQVGRTGAVTPVACLETVNIGGVNVSRAT 365 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I+ +DIR+GD VLV+RAG+VIP++V +I + R+ F P Sbjct: 366 LHNEDEIR-----------NKDIRIGDTVLVQRAGDVIPEIVKVIDSARNGSEIIFCMPQ 414 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S+++RD + L+ RC +C A+ +++HFVS+ AF+I+GLG++ ++ Sbjct: 415 NCPSCNSQLIRD---EKESLI---RCVNN-SCPAKTKAQIEHFVSKRAFDIDGLGEKLIN 467 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F D + + ADIF L + K+E + G S NL+++I K +NI+ R Sbjct: 468 QLF---DKKY-LSSYADIFYLDK------IKMEGLERMGLKSAGNLFEAIEKSKNINFAR 517 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI++LGIRHVG IA LA Y Y+ F + DD L + VG I+AQ+I Sbjct: 518 FIYALGIRHVGEHIAEILASKYEKYEKFC-------SATYDD---LKNIKGVGPIVAQSI 567 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 ++F N+ +E +L S I R+ +N S+ ++ K V TGTL+ + R++A + Sbjct: 568 IDFLGREDNLNNIERMLN--SGVIIRYGENRKSTTLDGKIFVLTGTLESMTRNEAIIKIK 625 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G +S +S+KTD ++ G +PGSK+EKA+ GV+I++E + + + Sbjct: 626 SFGGKISESVSKKTDYLVAGKSPGSKIEKAKAAGVEIIDENKLKIMFE 673 >gi|152971289|ref|YP_001336398.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166215815|sp|A6TC47|DNLJ_KLEP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150956138|gb|ABR78168.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 671 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 254/715 (35%), Positives = 412/715 (57%), Gaps = 52/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R+ + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTDHLTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A +LQ + G PV++ V +T +++YY +++ R L +DIDG+V KVD Sbjct: 236 PASHSARLLQ-FKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ Sbjct: 355 NATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+CQS V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCQSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA ++ + + Q L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 F+ N + LL E +P + + E+ + S K +V TG+L ++ R Sbjct: 558 THTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEE-IDSPFAGKTVVLTGSLSQLSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|329912476|ref|ZP_08275756.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480] gi|327545605|gb|EGF30768.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480] Length = 679 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 269/697 (38%), Positives = 398/697 (57%), Gaps = 53/697 (7%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 H YY P+I D++YD L R +A+ + P+L ++ P ++G +V Sbjct: 23 HAHAYYVLDNPVIPDADYDLLFRELEALEASHPELVTADSPT---RRVGAPPLPEFVQVR 79 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 HS+P LSL + ED+ F R+ Q + + + E K DG I +RYE G V Sbjct: 80 HSVPMLSLSNGFADEDVIGFDRRVRDGLQIAGE--VAYATELKYDGLAINLRYENGVLVE 137 Query: 151 AALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 AA RGDG +GE+V+ IR I IP R+ + P II+VRGEV + K DF +LN A G Sbjct: 138 AATRGDGSTGENVTVNIRTIRGIPLRLHTDTPPAIIDVRGEVLLYKADFASLNARQRAAG 197 Query: 210 RKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYE-MLQKMRCLGF 266 K +ANPRNAA+G LR+L+ + IT R L FF +G+G + + +L R LG Sbjct: 198 LKEFANPRNAAAGSLRQLD-SRITAQRALRFFAYGIGTLEGVAMPDSHSGLLDWYRALGI 256 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 PV + + + G++ +Y E+ + R++LPY+IDG+VYKVD+ Q+QLG AR+PR+ + Sbjct: 257 PVCDERKVVHGAAGLLDFYREIGAKRASLPYEIDGVVYKVDDAVQQQQLGFVARAPRYAL 316 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 +HKF ++AST + ID+Q+GRTG +TPVARL PV +GG ++TNATLHNED ++ Sbjct: 317 AHKFPAEEASTVVQGIDVQVGRTGAITPVARLAPVAVGGVIVTNATLHNEDEVR------ 370 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 +DIR+GD V+V+RAG+VIP+VV I + R PD Q F PS CP+C S +VR + Sbjct: 371 -----RKDIRIGDTVIVRRAGDVIPEVVAFIADLRGPDVQEFVMPSACPVCGSAIVRLED 425 Query: 447 PKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 A RC+GG + C+AQ+ L HFVSR A +IEGLG+Q + E IR Sbjct: 426 E------AIARCSGGWIKCAAQRKGGLLHFVSRRAMDIEGLGEQLVVQLVDRE----VIR 475 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 PAD++ L + + D S N+ ++ K ++ +L RFI++LGIRHVG Sbjct: 476 TPADLYKL------GLVGLSELARMADKSARNVLAALEKSKSTTLARFIYALGIRHVGEA 529 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A+ LA ++ +++ ++A + L+ V VG ++A +I+EF+ +P N+ V Sbjct: 530 TAKELAAHF-------GQLDIVLAATEE---QLLEVADVGPVVACSILEFFADPLNVELV 579 Query: 626 EALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 E L + GR + VS K V TGTL + R +A + G V+ +S Sbjct: 580 EQLRAAGVHWTEHAGR--QVVSLPQSGKTFVLTGTLPTLGRDEAAALIEAAGGKVAGSVS 637 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +KT ++ G + GSKL KAQ+LG+ I++E L LL+ Sbjct: 638 KKTSYVVAGSDAGSKLAKAQELGLAILDEAGLLQLLK 674 >gi|253689765|ref|YP_003018955.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756343|gb|ACT14419.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 681 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 261/711 (36%), Positives = 406/711 (57%), Gaps = 55/711 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L + + +H+ Y+ P I D EYD L + A+ P+L S+ P ++G Sbjct: 15 VAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKALEADHPELVTSDSPT---QRVGA 71 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + +V H +P LSL+ +++ E F RI + DD + F E K+DG ++ Sbjct: 72 APLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDD--LTFCCELKLDGLAVS 129 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 + YE G V AA RGDG +GE++++ IR + IP R+ NIP +EVRGEV++ + F Sbjct: 130 LLYEDGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGENIPRRVEVRGEVFMKHSGFE 189 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQYE 256 LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ A +E Sbjct: 190 KLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPAS-HWE 248 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + + G PV++ ++ ++ +Y ++ RS+L +DIDG+V KVD LQ++LG Sbjct: 249 RLMQFKAWGLPVSDKIKLCTGPAEVLDFYRHVEQTRSSLGFDIDGVVVKVDSLELQERLG 308 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++NATLHN Sbjct: 309 FVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHNA 368 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L +++GDRV+V+RAG+VIP++V I+ +ER QP FPS CP+ Sbjct: 369 DEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPSACPV 417 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V R G+ V RCTGGL C AQ+ E LKHFVSR A ++EG+G + +D + Sbjct: 418 CGSDVER----VEGEAVT--RCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVE 471 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E ++ PAD+F L T ++ G S TNL +++ K ++ +L RF+++ Sbjct: 472 KE----YVKTPADLFRLSAGIMTGLDRM------GPKSATNLVNALEKAKSTTLARFLYA 521 Query: 557 LGIRHVGAEIARSLAKYYLSYQN-FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR VG A +LA ++ S + FA D +L+ VP VG ++A + F Sbjct: 522 LGIRDVGESTAANLAAHFGSLEALFAA-----------DEETLLAVPDVGKVVAAHVRHF 570 Query: 616 YQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 + N + L +I E + + S K +V TG+L + R +A++ Sbjct: 571 LEEEHNQTVIRELTDPAGINIHWPEVVVVKAEEIDSPFAGKTVVLTGSLTILSRDEAKDR 630 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 631 LTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLLGE 681 >gi|56460801|ref|YP_156082.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR] gi|81362279|sp|Q5QUK1|DNLJ_IDILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56179811|gb|AAV82533.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR] Length = 670 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 261/706 (36%), Positives = 403/706 (57%), Gaps = 50/706 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + LEQ ++ ++ YY+ +P + D+EYD L R + PDL ++ P K+ Sbjct: 7 QRMQELEQLLNRYNQEYYENDEPSVPDAEYDRLFRELKTLETEHPDLKSAQSPT---MKV 63 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFTLEPKIDGT 137 GG+ V H +P LSL+ +++++ F R+ Q+ D N ++ F EPK+DG Sbjct: 64 GGKPLGQFRSVEHEVPMLSLDNAFSVDEFEAFSKRVE---QRLDTNQTVTFCCEPKLDGA 120 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++ YE G V A RGDG SGED++ ++ I +P LS ++PE +EVRGEV + Sbjct: 121 AVSLLYENGLLVRGATRGDGQSGEDITENVKTIRNVPLKLSGDVPERLEVRGEVVMPLGA 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI--FAKG 253 F N++ K +ANPRNAA+G LR+L+ + IT R L+F+ + LG SE Sbjct: 181 FERFNEQARQREEKVFANPRNAAAGSLRQLD-SRITAKRPLHFYAYSLGLISETTQLPDS 239 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ L +++ G PVN ++ ++ G YY + + R TL YDIDG+V+KVD LQ+ Sbjct: 240 HHQRLLQLKDWGLPVNIEIKTVDSVQGCDDYYEAILARRDTLNYDIDGVVFKVDSIRLQQ 299 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG AR+PRW I+ KF ++ T + +D Q+GRTG +TPVARLEPVN+GG ++NATL Sbjct: 300 DLGFVARAPRWAIARKFPAQEQLTTITGVDFQVGRTGAITPVARLEPVNVGGVTVSNATL 359 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L +R+GD V ++RAG+VIP+VV +I ++R + + FP Sbjct: 360 HNADEIERL-----------GVRIGDCVSIRRAGDVIPQVVSVIKDKRPENTKAIEFPQH 408 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CPICQS D+ G+ VA RCTGGL C+AQ+ E +KHF SR A +I+GLG + ++ Sbjct: 409 CPICQS----DIERVEGEAVA--RCTGGLYCAAQRKEAIKHFASRKAMDIDGLGDKIVEQ 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + + I+ PAD++ L S ++ + G S NL ++I + +L RF Sbjct: 463 LVERD----WIKSPADLYRL------SKAELATLPRMGAKSAENLRNAIKATQETTLARF 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I++LGIR VG A +LA ++ + ++ +IA ++ L VP VG ++A+ IV Sbjct: 513 IYALGIREVGEATANALANHF-------KNLDALIAAESE---QLQEVPDVGAVVAKHIV 562 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ N V L + +S G +V S+ + V TGTL + R +A+ + Sbjct: 563 AFFHEAHNQQVVAELREFISWPEGEEASSVQSDRLSGNTYVITGTLSTMTRDEAKSALEA 622 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V++ +S+KT ++ G+N GSKL KAQ LG+ I++E LL Sbjct: 623 LGAKVASSVSKKTTALVAGENAGSKLTKAQSLGLDILDENALAELL 668 >gi|319779225|ref|YP_004130138.1| DNA ligase [Taylorella equigenitalis MCE9] gi|317109249|gb|ADU91995.1| DNA ligase [Taylorella equigenitalis MCE9] Length = 681 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 273/718 (38%), Positives = 412/718 (57%), Gaps = 68/718 (9%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 +L+ IS HD YY P I D EYD L R+ A P+ S+ P+ ++GG + Sbjct: 11 ALKSLISVHDKAYYIDDNPQISDEEYDGLMRKLLDYEQAHPEWVTSDSPS---QRVGG-V 66 Query: 83 NLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 L +F V H++P LSL ++N E+L F R+ D F EPK DG I+I Sbjct: 67 ALKIFNSVRHAVPMLSLGNVFNPEELTAFYNRMVEAVGSDD---FEFNCEPKFDGLAISI 123 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP------EIIEVRGEVYISK 195 RYE G A+ RGDG +GEDV+A + I T+P L LN+P +IIEVRGE + + Sbjct: 124 RYENGVLKTASTRGDGLTGEDVTAQVSTIRTVP--LKLNVPSKEALPKIIEVRGEALMLR 181 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA--- 251 +DF L G + +ANPRNAA+G LR+L+P R L F+ +GLG+ + + Sbjct: 182 SDFDNLVKRQEEEGLQTFANPRNAAAGSLRQLDPKITAKRKLRFYAYGLGEFKSLGSEEP 241 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K Q ++L + LGF V G+++++ +K+ R TLP+DIDG+VYKVD F L Sbjct: 242 KSQSQLLDYLSELGFAVTEYRSVKKGLDGLLNFFEHIKAKRDTLPFDIDGVVYKVDSFEL 301 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+++G +++PR+ I+HKFA +Q T+LLDI++Q+GRTG LTPVARLEPV +GG + A Sbjct: 302 QQKIGFVSKAPRFAIAHKFAAEQMQTKLLDIEVQVGRTGALTPVARLEPVFVGGVTVRKA 361 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED I+ +++ +GD V+V+RAG+VIP+V++ +++ R DA F P Sbjct: 362 TLHNEDEIE-----------RKNLMIGDTVIVRRAGDVIPEVLESVIDLRPEDAVKFVMP 410 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S V + G+ VA RCTGGL C AQ + + H VSR A NIEGLG + + Sbjct: 411 TICPVCGSAVEK----PEGEAVA--RCTGGLVCGAQITQGIIHAVSRKALNIEGLGDKHI 464 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG------DVSVTNLYDSINKR 545 +E I+ D+F L T NILG +V L+ I Sbjct: 465 QKLVSTE----KIKRLDDLFKL-------TVDDLNILGRNAEDSKLEVLAPTLHARIQAS 513 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +L RF+F+LGIRHVG AR LAKY+ ++ +I+ + ++ L+ VP VG Sbjct: 514 KSTTLSRFLFALGIRHVGETTARDLAKYF-------GDLYSIMQASTEE---LVSVPNVG 563 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQR 663 +++A +I F+ P N + LL E+ + E+ ++ I V TGTL+ +R Sbjct: 564 EVMATSIHTFFNEPHNREVISNLL-ELGFVLNAEEEAIQINPAIAGHSFVVTGTLENWKR 622 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + + G +++ +S+KTD +++G PG SK++KAQ++G KI++E +F+ +L+Q Sbjct: 623 DEISQVIISSGGRINSSVSKKTDYLLMGAEPGDSKVKKAQEVGTKILSEAEFIQMLEQ 680 >gi|167570377|ref|ZP_02363251.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis C6786] Length = 691 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 264/729 (36%), Positives = 404/729 (55%), Gaps = 59/729 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + Q K + L E+ + YY +P + D+EYD L + PDL Sbjct: 5 PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P P ++GGE+ V H P LSL ++ ED+ F R+ K D Sbjct: 63 --TPESPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLN 180 + + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + ++P ++ + Sbjct: 121 VTDPVEYACELKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVPLKLKGKH 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++ +++ + R +LPYD Sbjct: 241 AYGIGVLDGVDMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C SR+ R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTACPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS++K ++ +L RFI++LGIRHVG A+ LAK++ S + ND Sbjct: 514 IDSLDKAKHTTLSRFIYALGIRHVGESTAKDLAKHFGSLDPIMDASIEALLEVND----- 568 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKL 652 VG I+A++I +F+ N +E L P R + V + K + Sbjct: 569 -----VGPIVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGV---LAGKTV 620 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++EE Sbjct: 621 VLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEE 680 Query: 713 QFLFLLQQY 721 LL+ + Sbjct: 681 GMHKLLEGH 689 >gi|52425821|ref|YP_088958.1| NAD-dependent DNA ligase LigA [Mannheimia succiniciproducens MBEL55E] gi|81386743|sp|Q65RN7|DNLJ_MANSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52307873|gb|AAU38373.1| Lig protein [Mannheimia succiniciproducens MBEL55E] Length = 675 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 265/725 (36%), Positives = 410/725 (56%), Gaps = 67/725 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L + YH+ Y+ P I D+EYD L + A+ P+L ++ P Sbjct: 1 MTIMDINQQIKQLRDTLRYHEYQYHVLDDPKIPDAEYDRLFHQLKALEQQHPELITADSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-----DNSI 126 ++G + ++TH +P LSL+ ++ E+ F+ RI +D + Sbjct: 61 T---QRVGAKPLAGFAQITHELPMLSLDNAFSDEEFNAFVKRI------QDRLIVLPQPL 111 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 F EPK+DG ++I Y G AA RGDG +GED++ IR I IP ++L+ N P + Sbjct: 112 TFCCEPKLDGLAVSIFYVNGVLTQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPARL 171 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHG 242 EVRGEV++ F LN+ + G K +ANPRNAA+G LR+L+P +R N + G Sbjct: 172 EVRGEVFMPHEGFNRLNERALEHGEKTFANPRNAAAGSLRQLDPKITSRRPLVFNAYSVG 231 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + E+ A YE LQ ++ +G PVN+ V+ + ++ +Y M+ R TL YDIDG Sbjct: 232 IAEGVELPAT-HYERLQWLKSVGIPVNSEVQLCDGSEKVLEFYRSMQQKRPTLGYDIDGT 290 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V K+++ LQ++LG +++PRW I++KF ++ TRL D++ Q+GRTG +TPVA+L PV Sbjct: 291 VLKINDIGLQRELGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLAPVF 350 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++NATLHN D I L DI +GD V+++RAG+VIP+++ ++ R Sbjct: 351 VAGVTVSNATLHNGDEIARL-----------DIAIGDTVVIRRAGDVIPQIIGVLHERRP 399 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 +AQ FP+ CP+C S++VR G+ VA RCTGGL C AQ+ E LKHFVSR A + Sbjct: 400 ANAQAIVFPTQCPVCGSKIVR----IEGEAVA--RCTGGLFCDAQRKEALKHFVSRRAMD 453 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+G+G + ++ E IR PAD+F L + ++E + G+ S N DS+ Sbjct: 454 IDGVGAKLIEQLVDKE----LIRTPADLFKLDL---ITLMRLERM---GEKSAQNALDSL 503 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K +N +L RFIF+LGIR VG A +LA ++ N+ A L V Sbjct: 504 EKAKNTTLARFIFALGIREVGEATALNLANHF----------KNLDALQAASPEQLQEVA 553 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTG 656 VG+++A I F++ NI AV L+ + G H + V ++ + K +V TG Sbjct: 554 DVGEVVANRIYVFWREQHNIDAVNDLIAQ-----GIHWETVETKEAGENPFKGKTVVLTG 608 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++ R++ ++ + QLGA + +S KT +I GDN GSKL KAQ+LGV +M+E +FL Sbjct: 609 TLTQMGRNETKDLLQQLGAKAAGSVSAKTHFVIAGDNAGSKLTKAQELGVAVMSEAEFLA 668 Query: 717 LLQQY 721 ++ Y Sbjct: 669 IVNAY 673 >gi|50122504|ref|YP_051671.1| NAD-dependent DNA ligase LigA [Pectobacterium atrosepticum SCRI1043] gi|81644069|sp|Q6D165|DNLJ_ERWCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49613030|emb|CAG76481.1| DNA ligase [Pectobacterium atrosepticum SCRI1043] Length = 681 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 259/712 (36%), Positives = 408/712 (57%), Gaps = 53/712 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L + + +H+ Y+ P I D EYD L + A+ P+L S+ P ++G Sbjct: 8 VAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTSDSPT---QRVGA 64 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + +V H +P LSL+ +++ E F RI + DD + F E K+DG ++ Sbjct: 65 APLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDD--LTFCCELKLDGLAVS 122 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 + YE+G V AA RGDG +GE++++ IR + IP R+ NIP +EVRGEV++ F Sbjct: 123 LLYEEGILVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEVRGEVFMKHGGFE 182 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQYE 256 LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ A +E Sbjct: 183 KLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPAS-HWE 241 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + + G PV++ ++ ++ +Y +++ RS+L +DIDG+V KVD +LQ++LG Sbjct: 242 RLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGFDIDGVVVKVDSLALQERLG 301 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++NATLHN Sbjct: 302 FVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHNA 361 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L +++GDRV+V+RAG+VIP++V I+ +ER QP FP+ CP+ Sbjct: 362 DEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPAACPV 410 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V R G+ V RCTGGL C AQ+ E LKHFVSR A ++EG+G + +D + Sbjct: 411 CGSDVER----VEGEAVT--RCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVE 464 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E ++ PAD+F L T ++ G S NL +++ K ++ +L RF+++ Sbjct: 465 KE----YVKTPADLFRLSAGIMTGLDRM------GPKSAMNLVNALEKAKSTTLARFLYA 514 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A +LA ++ S + + A + D +L+ VP VG I+A + F Sbjct: 515 LGIRDVGESTAANLAAHFGS-------LETLFAADED---ALLEVPDVGKIVAAHVRHFL 564 Query: 617 QNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + N + L +I E + + S K +V TG+L + R +A++ + Sbjct: 565 EEEHNQTVIRELTDPAGINIYWPEVKVVNAEEIDSPFAGKTVVLTGSLSILSRDEAKDRL 624 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 625 TALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLLNNHG 676 >gi|283786048|ref|YP_003365913.1| DNA ligase [Citrobacter rodentium ICC168] gi|282949502|emb|CBG89116.1| DNA ligase [Citrobacter rodentium ICC168] Length = 671 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 255/715 (35%), Positives = 408/715 (57%), Gaps = 56/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G S ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLTSFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSSDKLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED++A +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITANVRTIRAIPLRLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV+N V ++ ++++Y++++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSNRVTLCDSPEEVLAFYHKVEEDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGYVARAPRWAVAFKFPAQEQMTSVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPAETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ V RCTGGL C+AQ+ E LKHFVSR A +++G+ Sbjct: 401 PVVFPAQCPVCGSDVER----VEGEAVT--RCTGGLICAAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ D++ K + Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVDALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA ++ + + A E +I L +VP VG Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAFFGTLE--ALEAASI--------EELQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++A + F+ N + LL E + + + S K +V TG+L ++ R Sbjct: 555 VVATHVFNFFAEESNRDVIRQLLAEGVHWPAPVAIKAEEIDSPFAGKTVVLTGSLSQMSR 614 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 615 DDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|322418721|ref|YP_004197944.1| NAD-dependent DNA ligase [Geobacter sp. M18] gi|320125108|gb|ADW12668.1| DNA ligase, NAD-dependent [Geobacter sp. M18] Length = 668 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 265/711 (37%), Positives = 398/711 (55%), Gaps = 46/711 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A + ++ L +EI H+ YY+ P I D+EYDAL R + FP+LA P Sbjct: 1 MEAQAAAERIAWLSKEIERHNRLYYEQDMPEITDAEYDALFRELQELEKKFPELAL---P 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG +V HS P LSLE ++ +D+ F R+ RF D I + E Sbjct: 58 DSPTGRVGGRPLAKFTQVRHSTPMLSLENAFSEQDMVDFDDRVKRFLGLAADAQISYICE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG + + Y G + RGDG GE+V+ ++ I +P R+ + PE++ VRGE Sbjct: 118 PKMDGVAVELVYRDGLLAIGSTRGDGVVGEEVTQNLKTIKDVPLRLETREPPELVTVRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 VY+ F N E G P+ANPRNAA+G LR+L+ + IT R L+ F + G+ + Sbjct: 178 VYLPLAPFRKFNREREEAGEPPFANPRNAAAGSLRQLD-SRITAKRPLSIFCYAPGELAG 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q L+ + PVN R +++YY EM R LPY+IDG+V KVD Sbjct: 237 VEFTSQSHFLETIPKWRLPVNPLTRVVTGIQAMLAYYQEMMEKRDDLPYEIDGVVVKVDS 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F +Q++LGE++RSPRW + KF +QA+T + I +GRTG++TPVA L+PV++ G ++ Sbjct: 297 FRMQRELGEKSRSPRWATAWKFPPRQATTVVEKIFHSVGRTGVITPVAFLKPVSVSGVMV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN + ++ +DIR GD V+V+RAG+VIP VV ++++R A Sbjct: 357 SRATLHNWEELE-----------RKDIREGDTVVVERAGDVIPAVVQALLDKRPEGAVKP 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP+C VVR + A RC GLAC AQ LER+KHF SR A +IEGLG Sbjct: 406 EIPTSCPVCGGEVVRLPDE------VAVRCV-GLACPAQLLERVKHFASRRAMDIEGLG- 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 D F + S+++ +D+ + ++ + E + G NL ++I + Sbjct: 458 ---DKFIEQ---LLSLKLISDVADIYALKEADFMQFERM---GKKLAENLLNAIEASKER 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L R IF+LG+RHVG A+ LA + S +N A+ +++ L+ IR VG + Sbjct: 509 DLSRLIFALGMRHVGEHTAKLLAGAFGSIENLAK--------ASEEELTSIRE--VGPQV 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A +IV+F++N N+ +E LKE S EK + K VFTG L+K R A++ Sbjct: 559 AASIVDFFKNEENLRVIER-LKEAGVSPKVEEKRLGGRFTGKTFVFTGALEKFTRDGAKK 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V Q GA + +S+KTD ++ G + GSKLEKA+QLGV+++ EE+FL L+Q Sbjct: 618 MVEQEGAHAAGSVSKKTDYVVAGADAGSKLEKARQLGVRVLTEEEFLELMQ 668 >gi|262042032|ref|ZP_06015211.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040623|gb|EEW41715.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 671 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 254/715 (35%), Positives = 412/715 (57%), Gaps = 52/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R+ + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTDHLTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A +LQ + G PV++ V +T +++YY +++ R L +DIDG+V KVD Sbjct: 236 PASHSARLLQ-FKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ Sbjct: 355 NATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+CQS V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCQSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA ++ + + Q L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 F+ N + LL E +P + + E+ + S K +V TG+L ++ R Sbjct: 558 AHTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEE-IDSPFAGKTVVLTGSLSQLSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|85859410|ref|YP_461612.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB] gi|123738818|sp|Q2LTN8|DNLJ_SYNAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|85722501|gb|ABC77444.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB] Length = 672 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 266/717 (37%), Positives = 395/717 (55%), Gaps = 61/717 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E ARK + L+ I YH+ YYQ P I D+EYD+L + A+ FP + P Sbjct: 2 MDAESARKNIEDLKARIEYHNRRYYQLDDPEISDAEYDSLLQELIALEKQFPQWLTEDSP 61 Query: 72 N-----GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + PL+K ++LS P LSL ++ E++ +F R+ RF + S Sbjct: 62 SRRIGAAPLSKFAPAVHLS--------PMLSLANAFSEEEILEFDRRLKRFLDSSERLS- 112 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIP 182 F +EPKIDG + + Y G A RGDG GEDV+ IR + TIP + +P Sbjct: 113 -FVVEPKIDGVAVNLIYSSGVLTTGATRGDGAKGEDVTQNIRTLHTIPLKIQNGSDERLP 171 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241 E IE+RGE+Y+ F LN+ +A G P+ANPRNAA+G LR+L+ + R L F + Sbjct: 172 EQIEIRGEIYMETAAFRKLNERRLAAGEPPFANPRNAAAGSLRQLDASITARRPLKMFCY 231 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 +G +++L ++ GF VN +RQ + +Y E++ +R+ LPY+IDG Sbjct: 232 AVGIVRGRAFTYHHDVLHALKKWGFSVNPFIRQVEGIEKCIEFYRELQDLRNELPYEIDG 291 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KVD+ SLQ +LG +RSPRW ++ KFA QA+T + DI + +GRTG LTPVA + PV Sbjct: 292 MVIKVDDLSLQTRLGAVSRSPRWAVACKFAATQATTVIRDIIVNVGRTGTLTPVALMTPV 351 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG ++ ATLHN+D I +DIR+GD VLV+RAG+VIP+VV +IV+ R Sbjct: 352 KVGGVTVSRATLHNQDEID-----------KKDIRIGDTVLVQRAGDVIPEVVKVIVSNR 400 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 PF P CP C S VVR AAHRC GL+C AQ ++HFVSR Sbjct: 401 SGREIPFKIPDTCPECGSEVVRLAGE------AAHRCI-GLSCPAQLRRHIQHFVSRGGM 453 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG + + + I PAD++ L S + N+ + SV+NL + Sbjct: 454 DIEGLGDKLVSQLVNQK----LIHDPADLYYL------SHDALLNLERMAEKSVSNLLSA 503 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I ++ SL++ IF+LGIRHVG I++ LA+ + + N L+ + Sbjct: 504 IELSKHPSLDKIIFALGIRHVGEHISKILARRFRTLDALINTTEN----------ELLAI 553 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 +G ++ +I+EF++N N +E L K VSP + S+ + K VFTG L + Sbjct: 554 RDIGPEVSSSILEFFRNASNRRVIEKLKKAGVSPLETISPR--SAPLTGKTFVFTGALSR 611 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + R +A++ V LG + +++KTD ++ G+ GSKL+KAQ+ G+ I++EE+FL L Sbjct: 612 MTRDEAKQIVESLGGQAAGTVTKKTDYVVAGEAAGSKLQKAQKAGIAILSEEEFLRL 668 >gi|212638096|ref|YP_002314616.1| NAD-dependent DNA ligase LigA [Anoxybacillus flavithermus WK1] gi|254781544|sp|B7GFV1|DNLJ_ANOFW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212559576|gb|ACJ32631.1| NAD-dependent DNA ligase [Anoxybacillus flavithermus WK1] Length = 672 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 256/706 (36%), Positives = 402/706 (56%), Gaps = 52/706 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K+++ L ++I H+ YY +P I D+EYD L R+ + +P + + P+ P ++ Sbjct: 11 KQIAELREQIEKHNYAYYVLDQPSISDAEYDELMRKLMELEEQYP---QYKTPDSPSQRV 67 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + KVTH +P LSL +N DLR F R+ +++ + + E KIDG Sbjct: 68 GGAPLEAFRKVTHRVPMLSLSNAFNEGDLRDFDRRV-----RQEVGDVRYVCELKIDGLA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +++RYE G FV A RGDG +GED++ ++ I ++P L L IEVRGE Y+ + F Sbjct: 123 VSLRYEDGYFVQGATRGDGTTGEDITENLKTIRSLP--LRLRQQVTIEVRGEAYMPRKSF 180 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEM 257 LN++ G + +ANPRNAA+G LR+L+P +R L+ F + + E+ Sbjct: 181 EKLNEKRKMNGEELFANPRNAAAGSLRQLDPKVAASRQLDIFAYHVVNAEELGILSHSAA 240 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L + LGF N + T ++SY + R++LPYDIDG+V KVD F+ QKQLG Sbjct: 241 LNYLDELGFKTNPARQVCETIDDVLSYIEQWHERRASLPYDIDGIVIKVDAFAQQKQLGA 300 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF ++ T+L+DI++ +GRTG++TP A L+PV + G ++ A+LHNED Sbjct: 301 TAKSPRWAIAYKFPAEEVVTQLVDIELSVGRTGVVTPTAILQPVRVAGTIVQRASLHNED 360 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI+ +DIR+GD V++K+AG++IP+VV + R +PF P+ CP C Sbjct: 361 YIR-----------EKDIRLGDYVVIKKAGDIIPEVVCSLPERRTGKEEPFDMPTHCPAC 409 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +VR L+ + A RC C AQ E L HFVSR A NI+GLG++ + F+ Sbjct: 410 ASELVR-LDDEV-----ALRCVNP-QCPAQIREGLIHFVSRQAMNIDGLGEKVIAQLFEH 462 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 +R AD++TL + + + ++ G+ S TNL +I + SLER +F L Sbjct: 463 R----LVRSVADLYTLTKDELVALERM------GEKSATNLLQAIEASKQNSLERLLFGL 512 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA+ A++LA+++ + + Q L+ + +G+ +A +IV ++ Sbjct: 513 GIRHVGAKAAKTLAEHFETMERLQQATKE----------ELMAIHEIGEKMADSIVTYFS 562 Query: 618 NPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +E L ++ + ++SS K V TGTLQ + R +A+E + LG Sbjct: 563 KEEVKQLLERLRAYGVNMTYKGAKQTIDISSTFAGKTFVLTGTLQSMSRSEAKEKIETLG 622 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+KTD+++VG++ GSKLEKA+QLG+ I +E +FL +QQ Sbjct: 623 GKVTGSVSKKTDVVVVGEDAGSKLEKAKQLGITIWDEARFLQEIQQ 668 >gi|261822799|ref|YP_003260905.1| NAD-dependent DNA ligase LigA [Pectobacterium wasabiae WPP163] gi|261606812|gb|ACX89298.1| DNA ligase, NAD-dependent [Pectobacterium wasabiae WPP163] Length = 681 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 259/708 (36%), Positives = 405/708 (57%), Gaps = 53/708 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L + + +H+ Y+ P I DSEYD L + A+ P+L S+ P ++G Sbjct: 15 VAELRRVLRHHEYKYHVEDAPEIPDSEYDKLMQELKALEADHPELVTSDSPT---QRVGA 71 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + +V H +P LSL+ +++ E F RI + DD + F E K+DG ++ Sbjct: 72 APLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDD--LTFCCELKLDGLAVS 129 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 + YE G V AA RGDG +GE++++ IR + IP R+ NIP +EVRGEV++ F Sbjct: 130 LLYEDGVLVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEVRGEVFMKHGGFE 189 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQYE 256 LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ A +E Sbjct: 190 KLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPAS-HWE 248 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + + G PV++ ++ ++ +Y +++ RS L +DIDG+V KVD +LQ++LG Sbjct: 249 RLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSELGFDIDGVVVKVDSLALQERLG 308 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++NATLHN Sbjct: 309 FVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHNA 368 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L +++GDRV+V+RAG+VIP++V I+ +ER QP FP CP+ Sbjct: 369 DEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPVACPV 417 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V R G+ V RCTGGL C AQ+ E LKHFVSR A ++EG+G + +D + Sbjct: 418 CGSDVER----VEGEAVT--RCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVE 471 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E ++ PAD+F L T ++ G S N+ +++ K ++ +L RF+++ Sbjct: 472 KE----YVKTPADLFRLSAGSMTGLDRM------GPKSAMNVVNALEKAKSTTLARFLYA 521 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A +LA ++ S + + A + D +L+ VP VG I+A + F Sbjct: 522 LGIRDVGESTAANLAAHFGS-------LEALFAADED---ALLAVPDVGKIVAAHVRHFL 571 Query: 617 QNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + N + L +I E + + S K +V TG+L + R +A++ + Sbjct: 572 EEEHNQTVIRELTDPAGINIHWPEVQVVNAEEIDSPFAGKTVVLTGSLSILSRDEAKDRL 631 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 632 TALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 679 >gi|237745525|ref|ZP_04576005.1| DNA ligase [Oxalobacter formigenes HOxBLS] gi|229376876|gb|EEO26967.1| DNA ligase [Oxalobacter formigenes HOxBLS] Length = 685 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 264/717 (36%), Positives = 406/717 (56%), Gaps = 59/717 (8%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + L EI ++ YY P++ D+EYD + R + A+P+L P P ++GG Sbjct: 20 AKLRSEIERYNYAYYVLDAPVVPDAEYDRVFRELQELEAAYPELVV---PGSPTQRVGGA 76 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 KV H +P LSL+ E++ F R+ ++ + + E K DG +++ Sbjct: 77 PLAQFDKVEHRLPMLSLQNGLTDEEVEAFDRRL---GEELGIAQVEYEAELKFDGLAVSL 133 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLA 200 RYEKG V AA RGDG SGE+++A IR I ++P LS L PE++EVRGEV + K DF Sbjct: 134 RYEKGVLVQAATRGDGMSGENITANIRTIRSVPLHLSELAPPEVLEVRGEVLMFKKDFQD 193 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK-TSEIFAKGQYEM 257 LN G+K + NPRNAA+G LR+L+ + IT R L FF +G+G+ + Q + Sbjct: 194 LNRRQRESGQKEFVNPRNAAAGSLRQLD-SQITASRQLKFFAYGIGELDGAPLPETQNRL 252 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L LG PV + F G++ ++ +++ R LPY+IDG+VYKV+ S Q++LG Sbjct: 253 LNWFVQLGIPVCEERKVVRGFKGLMGFFQAIEARRDALPYEIDGVVYKVNRLSEQQKLGF 312 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PR+ ++HKF ++ T + DI++Q+GRTG +TPVARL+PV +GG +TNATLHNED Sbjct: 313 ISRAPRFALAHKFPAQEVLTEVTDINVQVGRTGAITPVARLKPVFVGGVTVTNATLHNED 372 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 ++ +D+R+GD V+V+RAG+VIP+V+ + +R DA+ F P+ CP+C Sbjct: 373 EVR-----------RKDVRIGDTVIVRRAGDVIPEVIASVPEKRPADAREFVMPALCPVC 421 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 S +VR + A RC+GG + C+AQ+ L+ F SR A NIEGLG+Q +D Sbjct: 422 GSPIVRPEDE------AIARCSGGWIKCAAQKKGGLQLFASRKAMNIEGLGEQLIDQLVD 475 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I AD++ L + ++ D S +NL D + + R +L RF+++ Sbjct: 476 RQ----IINDAADLYRLDLETLSGLDRM------ADKSASNLLDELGRSRETTLSRFLYA 525 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG ARSLA+++ + Q+ N L+ V +G ++A +I +F+ Sbjct: 526 LGIRHVGETTARSLAEHFGNLQDLM----------NATEEQLLEVDDIGPVVALSIRQFF 575 Query: 617 QNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + RN + L + P EK + ++++K V TGTL + R A E + LG Sbjct: 576 DDVRNRELIGKLQNDGVHWPERAMKEKPPALPLQDRKFVLTGTLSSLTREAAAEIIRNLG 635 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731 VS +S+KTD ++ G PGSKL KAQ+LG++I++EE F+ L++ HD D Sbjct: 636 GKVSNSVSKKTDYVLAGSEPGSKLAKAQELGIRILDEEAFVQLVK--------HDKD 684 >gi|76810783|ref|YP_333980.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b] gi|167720173|ref|ZP_02403409.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei DM98] gi|167911510|ref|ZP_02498601.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 112] gi|254189298|ref|ZP_04895809.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237] gi|254259109|ref|ZP_04950163.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a] gi|254297202|ref|ZP_04964655.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e] gi|123771899|sp|Q3JR23|DNLJ_BURP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76580236|gb|ABA49711.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b] gi|157807762|gb|EDO84932.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e] gi|157936977|gb|EDO92647.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237] gi|254217798|gb|EET07182.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a] Length = 691 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 271/726 (37%), Positives = 401/726 (55%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE V H P LSL + ED+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IP +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++++++ + R +LPYD Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFAEKSARNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S + I H D +L Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSL--------DPIMHAPID--AL 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E L K P + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 TLLEGH 689 >gi|268593162|ref|ZP_06127383.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131] gi|291311208|gb|EFE51661.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131] Length = 671 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 250/708 (35%), Positives = 409/708 (57%), Gaps = 49/708 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E+ L++++ +H+ Y+ P I D EYD L +R I P+L S+ P + Sbjct: 4 KQEIDELKKQLRHHEYQYHVLDAPEIPDVEYDKLMQRLKEIEAQHPELVTSDSPT---QR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V H IP LSL+ +++ E F R+ + K+ + F E K+DG Sbjct: 61 VGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRD--RLKNHQELTFCCELKLDGL 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ YE G+ V AA RGDG GE+++A +R I IP R+ NIP+ +E+RGEV++ + Sbjct: 119 AVSLLYENGELVQAATRGDGTVGENITANVRTIRAIPLRLRGSNIPDRVEIRGEVFMPQK 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFAKGQ 254 F ALN++ K +ANPRNAA+G LR+L+P R L F+ +G+G Sbjct: 179 GFEALNEQARKTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGGSLPDTH 238 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 Y+ L + + G PV++ V+ ++ +Y+E++ +R L +DIDG+V KV+ ++Q++ Sbjct: 239 YDRLMQFKAWGLPVSDYVQLRVGHQAVLDFYHEIEQVRPDLGFDIDGVVIKVNSIAIQEE 298 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW + KF ++ T L D++ Q+GRTG +TPVARLEPV + G +++NATLH Sbjct: 299 LGFVSRAPRWATAFKFPAQEQVTLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLH 358 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L + +GD V+++RAG+VIP++V ++V++R D++ FP+ C Sbjct: 359 NADEIERL-----------GVHIGDTVIIRRAGDVIPQIVSVVVDKRPTDSREIVFPTHC 407 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S D+ G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + +D Sbjct: 408 PVCGS----DIERVEGEAVA--RCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQL 461 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E ++ PAD++ Q S + + G S NL D++NK + +L RFI Sbjct: 462 VEKE----YVKTPADLY------QLSAGILTGLDRMGPKSAQNLVDALNKSKQTTLARFI 511 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG A +LA +Y + + A D SL V +G ++A+ +V Sbjct: 512 YALGIREVGEATAANLAAHYTTLE----------AVMTADEESLKTVQDIGHVVAKHVVN 561 Query: 615 FYQNPRNICAVEALLKEVS---PSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F++ P N +E LL + + P + + + S K +V TG++ + R +A++ + Sbjct: 562 FFREPHNQAVIEDLLTKANIHWPEVKVVNSAEIDSPFAGKTVVLTGSMSVLTRDEAKDKL 621 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA VS +S+KTD++I G+ GSKL KA +LG+++++E + + LL Sbjct: 622 VALGAKVSGSVSKKTDLVIAGEAAGSKLAKANELGIRVIDENELVRLL 669 >gi|15603581|ref|NP_246655.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp. multocida str. Pm70] gi|81636517|sp|Q9CKA9|DNLJ_PASMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|12722128|gb|AAK03800.1| Lig [Pasteurella multocida subsp. multocida str. Pm70] Length = 673 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 260/718 (36%), Positives = 408/718 (56%), Gaps = 69/718 (9%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ L Q + YH+ Y+ P I D+EYD L R + +P P+ P ++G Sbjct: 8 EIEQLRQTLRYHEYQYHVLDNPQIPDAEYDRLFHRLKTLEQQYPQWF---SPDSPTQRVG 64 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLEPK 133 + + +V H +P LSL+ ++ E+L F+ RI D +F F EPK Sbjct: 65 AKPLSAFAQVQHEMPMLSLDNAFSDEELHAFVKRI-------QDRLVFSPKLLEFCCEPK 117 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I Y GK AA RGDG +GED++ IR + IP ++L N P +EVRGEV+ Sbjct: 118 LDGLAVSILYVDGKLTQAATRGDGSTGEDITLNIRTVRNIPLQLLMENPPTRLEVRGEVF 177 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTSEI 249 +S+ F LN++ +A G K +ANPRNAA+G LR+L+P ++ LN + G+ + ++ Sbjct: 178 MSQAGFEVLNEKALARGEKTFANPRNAAAGSLRQLDPRITSQRPLLLNAYSIGVAEGIDL 237 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +E LQ ++ +G PVNN ++ ++++Y + RSTL YDIDG V KV++ Sbjct: 238 -PDTHFERLQWLKSIGIPVNNEIQLCEGTENVLNFYRAIMQKRSTLGYDIDGTVIKVNDI 296 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +++PRW I++KF ++ T L ++ Q+GRTG +TPVA+L+PV + G ++ Sbjct: 297 ALQEELGFISKAPRWAIAYKFPAQEELTVLNAVEFQVGRTGAITPVAKLQPVFVAGVTVS 356 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I L D+ +GD V+++RAG+VIP+++ ++ +R +A+ Sbjct: 357 NATLHNGDEIARL-----------DVAIGDTVIIRRAGDVIPQIIGVLHEKRPANAEKIV 405 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S +VR G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 FPTECPVCGSVIVR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGVGAK 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E I PAD+F L + ++E + G S N DS+ K + + Sbjct: 460 LIEQLVDRE----QIHTPADLFKLDL---NTLARLERM---GLKSAQNALDSLQKAKKTT 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFIF+LGIR VG A +LA ++ + + + + D VG+++A Sbjct: 510 LARFIFALGIREVGEATALNLANHFKTLEALKEATLEQLQEVQD----------VGEVVA 559 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS------SEIENKKLVFTGTLQKIQR 663 I F++ P N+ VE L+ + G H + V + + K +V TGTL ++ R Sbjct: 560 NRIFVFWREPHNVAVVEDLIAQ-----GIHWETVEVKDVGDNPFKEKTVVLTGTLTQMGR 614 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 +A+ + QLGA VS +S KTD+++ GD+ GSKL KA +LGVK+++E FL + Y Sbjct: 615 TEAKALLQQLGAKVSGSVSAKTDLVVAGDSAGSKLTKANELGVKVIDENTFLAWSKPY 672 >gi|260219439|emb|CBA26284.1| DNA ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 696 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 263/717 (36%), Positives = 391/717 (54%), Gaps = 56/717 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K L +L +E+ YY P++ D EYD L R + P+ P+ P ++ Sbjct: 20 KRLQALREELHRLGHAYYVLDAPLVPDVEYDRLFRELQDLEAQHPEWV---TPDSPTQRV 76 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRK--FITRIYRFWQ-KKDDNSIFFTLEPKID 135 GG++ + V H++P LS+ + E F TR+ + + + D + + E K D Sbjct: 77 GGQVLDAFTSVRHAVPMLSIRTETDTESTGALAFDTRVRKELELNEGDAPVEYVAELKFD 136 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + +RYE+G V AA RGDG GEDV+ IR I IP L +P ++EVRGEVY+ + Sbjct: 137 GLAMNLRYEQGVLVQAATRGDGEYGEDVTQNIRTIGQIPLRLPDGVPPVLEVRGEVYMRR 196 Query: 196 NDFLALNDEMIA------VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248 +DF ALN+ A G K + NPRNAA+G +R+L+P R L+FF +GLG+ + Sbjct: 197 DDFEALNERQRARIAAGEKGEKTFVNPRNAAAGAVRQLDPGIAAQRPLSFFAYGLGEVTP 256 Query: 249 IFAKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G Y MLQ ++ GFPV V A +++Y+ + + R +LP+DIDG+V Sbjct: 257 AAEGGPDFGSHYAMLQTLKSWGFPVAAQVDTARGAPELIAYHQRIGAGRDSLPFDIDGVV 316 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKV+ +LQ++LG R PRW ++HK+ ++ T +L ID+Q+GRTG LTPVA+L PV + Sbjct: 317 YKVNSLALQQRLGFVTREPRWAVAHKYPAQEQLTTVLAIDVQVGRTGKLTPVAKLAPVFV 376 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +TNATLHNED + +D+RVGD V+V+RAG+VIP+VV ++ +R Sbjct: 377 GGVTVTNATLHNEDEAR-----------RKDVRVGDTVIVRRAGDVIPEVVSVLPEKREG 425 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA F+ P CP+CQS VR+ A +RCTGGL CSAQ+ + + HF R A + Sbjct: 426 DAPQFTMPRICPVCQSAAVREEGE------ADYRCTGGLFCSAQRKQAILHFAQRRAVEV 479 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG + ++ A IR D++ L + + ++ D S N+ D++ Sbjct: 480 EGLGDKLVEQLVD----ANVIRNLPDLYRL------GLSALASLDRMADKSAQNIVDALE 529 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + +L RF+F LGIRHVG A+ LA+++ + A D +L+ V Sbjct: 530 KSKQTTLPRFLFGLGIRHVGEATAKELARHF----------GTLDAIMEADEEALLAVSD 579 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG I+AQ+I F+ N VE L V+ G + K LV TGTL + Sbjct: 580 VGPIVAQSIRTFFDQAHNREVVEQLRACGVTWPEGAPADAGPKPLAGKTLVLTGTLPTLG 639 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A++ + G VS +S+KT ++ G GSKL+KA +LGV +++E L LL+ Sbjct: 640 RDAAKDLIEAAGGKVSGSVSKKTHFVVAGAEAGSKLDKANELGVPVLDEAGLLELLK 696 >gi|330013648|ref|ZP_08307732.1| DNA ligase [Klebsiella sp. MS 92-3] gi|328533421|gb|EGF60158.1| DNA ligase [Klebsiella sp. MS 92-3] Length = 671 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 254/715 (35%), Positives = 411/715 (57%), Gaps = 52/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R+ + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTDHLTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A +LQ + G PV++ V +T +++YY +++ R L +DIDG+V KVD Sbjct: 236 PASHSARLLQ-FKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 ELQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ Sbjct: 355 NATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+CQS V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCQSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFRLTAGELTGLDRM------GPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA ++ + + Q L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 F+ N + LL E +P + + E+ + S K +V TG+L ++ R Sbjct: 558 THTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEE-IDSPFAGKTVVLTGSLSQLSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|138893932|ref|YP_001124385.1| NAD-dependent DNA ligase LigA [Geobacillus thermodenitrificans NG80-2] gi|166215760|sp|A4IJY6|DNLJ_GEOTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|134265445|gb|ABO65640.1| DNA ligase [Geobacillus thermodenitrificans NG80-2] Length = 670 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 271/711 (38%), Positives = 411/711 (57%), Gaps = 62/711 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +QA++ + L + ++ + YY +P + D+EYD L + AI +P+L S+ P Sbjct: 4 QQAKRRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTSDSPT-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +IGG + KVTH +P +SL +N DLR F R+ +++ + E KI Sbjct: 62 -QRIGGPPLEAFRKVTHRVPMMSLANAFNEGDLRDFDRRV-----RQEVGEAAYVCELKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I ++P L LN P +E RGE ++ Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLP--LRLNEPVSLEARGEAFMP 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ FV+GL E+ + Sbjct: 174 KASFLRLNEERQARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIES 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 L ++ LGF VN R+ T ++++ NE K R LPY+IDG+V KVD F+ Q+ Sbjct: 234 HSAALSYLQSLGFKVNPERRRCATIDEVIAFVNEWKEKRPQLPYEIDGIVIKVDSFAQQR 293 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG A+SPRW I++KF ++ T L+ I++ +GRTG +TP A LEPV + G + ATL Sbjct: 294 QLGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGAVTPTAILEPVRVAGTTVQRATL 353 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED+I+ +DIR+GD V++K+AG++IP+VV ++V+ R D PF+ P+ Sbjct: 354 HNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDEVPFTMPTH 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C+S +VR L+ + A RC C AQ ERL HF SR A NIEGLG++ + Sbjct: 403 CPECESELVR-LDGEV-----ALRCLNP-KCPAQLRERLIHFASRSAMNIEGLGEKVVTQ 455 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F A + AD++ L + Q ++ G+ S NL +I + SLER Sbjct: 456 LFN----AGLVHDVADLYQLTKEQLVGLERM------GEKSAANLLAAIEASKQNSLERL 505 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR+VGA+ A+ LA+++ + + + A D+ L+ VP +G+ +A +I Sbjct: 506 LFGLGIRYVGAKAAQLLAEHF-------ETMERLEAATKDE---LMAVPEIGEKMADSIT 555 Query: 614 EFYQNPRNICAVEALLKEVS------PSIGRH---EKNVSSEIENKKLVFTGTLQKIQRH 664 ++ P AVE LL E+ GR E SS + K +V TG L + R+ Sbjct: 556 TYFSQPE---AVE-LLNELRTYGVNMAYKGRKRTAETPASSVLAGKTVVLTGKLASMSRN 611 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A+E + +LG V+ +SR TDI+I G++ GSKL+KAQQLG++I +E +FL Sbjct: 612 EAKEQIERLGGRVTGSVSRSTDIVIAGEDAGSKLDKAQQLGIEIWDETRFL 662 >gi|196250518|ref|ZP_03149209.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16] gi|196210008|gb|EDY04776.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16] Length = 670 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 271/711 (38%), Positives = 411/711 (57%), Gaps = 62/711 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +QA++ + L + ++ + YY +P + D+EYD L + AI +P+L S+ P Sbjct: 4 QQAKRRATELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTSDSPT-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +IGG + KVTH +P +SL +N DLR F R+ +++ + E KI Sbjct: 62 -QRIGGPPLEAFRKVTHRVPMMSLANAFNEGDLRDFDRRV-----RQEVGEAAYVCELKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I ++P L LN P +E RGE ++ Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLP--LRLNEPVSLEARGEAFMP 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ FV+GL E+ + Sbjct: 174 KASFLRLNEERQARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIES 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 L ++ LGF VN R+ T ++++ NE K R LPY+IDG+V KVD F+ Q+ Sbjct: 234 HSAALSYLQSLGFKVNPERRRCATIDEVIAFVNEWKEKRPQLPYEIDGIVIKVDSFAQQR 293 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG A+SPRW I++KF ++ T L+ I++ +GRTG +TP A LEPV + G + ATL Sbjct: 294 QLGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGAVTPTAILEPVRVAGTTVQRATL 353 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED+I+ +DIR+GD V++K+AG++IP+VV ++V+ R D PF+ P+ Sbjct: 354 HNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDEVPFTMPTH 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C+S +VR L+ + A RC C AQ ERL HF SR A NIEGLG++ + Sbjct: 403 CPECESELVR-LDGEV-----ALRCLNP-KCPAQLRERLIHFASRSAMNIEGLGEKVVTQ 455 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F A + AD++ L + Q ++ G+ S NL +I + SLER Sbjct: 456 LFN----AGLVHDVADLYQLTKEQLVGLERM------GEKSAANLLAAIEASKQNSLERL 505 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR+VGA+ A+ LA+++ + + + A D+ L+ VP +G+ +A +I Sbjct: 506 LFGLGIRYVGAKAAQLLAEHF-------ETMERLEAATKDE---LMAVPEIGEKMADSIT 555 Query: 614 EFYQNPRNICAVEALLKEVS------PSIGRH---EKNVSSEIENKKLVFTGTLQKIQRH 664 ++ P AVE LL E+ GR E SS + K +V TG L + R+ Sbjct: 556 TYFSQPE---AVE-LLNELRTYGVNMAYKGRKRTAETPASSVLAGKTVVLTGKLASMSRN 611 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A+E + +LG V+ +SR TDI+I G++ GSKL+KAQQLG++I +E +FL Sbjct: 612 EAKEQIERLGGRVTGSVSRSTDIVIAGEDAGSKLDKAQQLGIEIWDETRFL 662 >gi|197117724|ref|YP_002138151.1| NAD-dependent DNA ligase [Geobacter bemidjiensis Bem] gi|254781337|sp|B5EIJ0|DNLJ_GEOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|197087084|gb|ACH38355.1| DNA ligase, NAD-dependent [Geobacter bemidjiensis Bem] Length = 668 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 269/710 (37%), Positives = 394/710 (55%), Gaps = 54/710 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L EI H+ YY+ P I D+EYDAL R + ++PDLA P+ P Sbjct: 6 AAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASYPDLAL---PDSPTG 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG +V H+ P LSLE + +D+ F R+ RF I + EPK+DG Sbjct: 63 RVGGRPVAKFTQVRHTTPMLSLENAFTEKDIVDFDDRMKRFLGLSGAEEIGYVCEPKMDG 122 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 + + Y G + RGDG GE+V+ ++ I IP R+ + P ++ VRGEVY+ Sbjct: 123 VAVELVYRDGLLAIGSTRGDGLVGEEVTQNLKTIKDIPLRLQTEEPPGLLTVRGEVYLPL 182 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG 253 F N E G P+ANPRNAA+G LR+L+ + IT R L+ F + G+ + + Sbjct: 183 EPFRKFNQEREEAGEPPFANPRNAAAGSLRQLD-SKITAKRPLSIFCYAPGEVDGVAFQS 241 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + L + PVN R G++ YYNEM R LPY+IDG+V KVD FSLQ+ Sbjct: 242 QSDFLSTIPTWRIPVNPLTRLVPGVQGVLDYYNEMMEKRDDLPYEIDGVVVKVDRFSLQR 301 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LGE++RSPRW I+ KF +QA+T + DI Q+GRTG++TPVA LEPVN+ G +++ ATL Sbjct: 302 DLGEKSRSPRWAIAWKFPPRQATTVVNDIVPQVGRTGVITPVAHLEPVNVSGVMVSRATL 361 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN + ++ +DIR GD V+V+RAG+VIP VV ++V +R P Sbjct: 362 HNWEEME-----------RKDIRRGDTVVVERAGDVIPAVVQVLVEKRQGSETLLPVPQA 410 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C VVR G++ A RC GL C AQ LER+KHF +R A +I+GLG++ ++ Sbjct: 411 CPVCGGEVVR----IPGEV--AVRCV-GLNCPAQALERVKHFAARRAMDIDGLGEKFIEQ 463 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISL 550 + IR ADI+ L E+ + F G NL +SI + L Sbjct: 464 LLNLK----LIRNVADIYRLTE---------EDFMQFERMGKKLAENLLNSIAASKEREL 510 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R IF+LGIRHVG A+ LA + S +N +A +++ L+ IR VG +A Sbjct: 511 SRLIFALGIRHVGEHTAKLLASAFGSMEN--------LAAASEEELTSIRE--VGPQVAA 560 Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +I +F+++ N+ + L + V+P + EK V K VFTG L+K R +A++ Sbjct: 561 SIADFFKSEENLEVLRELKEHGVNPRV--EEKRVGGRFTGKTFVFTGALEKFTRDEAKKM 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V G + +S+KTD ++ G + GSKL+KAQQLGV++++E+ FL L+Q Sbjct: 619 VELEGGHAAGSVSKKTDYVVAGADAGSKLDKAQQLGVRVLSEDDFLELMQ 668 >gi|83647417|ref|YP_435852.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396] gi|123767368|sp|Q2SD47|DNLJ_HAHCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83635460|gb|ABC31427.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396] Length = 683 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 253/714 (35%), Positives = 398/714 (55%), Gaps = 49/714 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++EL++L + I+ H+ YY P I D+EYD L RR I FP ++ P+ P + Sbjct: 9 QEELNTLRETINDHNYRYYTLDDPSIPDAEYDRLMRRLREIEAEFP---QTITPDSPTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G V+H +P LSL+ + +DL F R+ ++ +D I + EPK+DG Sbjct: 66 VGAAPAEGFETVSHRLPMLSLDNAFEEQDLLDFDRRVRERLKEAEDARIDYCCEPKLDGI 125 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++ Y G V RGDG +GED++A ++ + IP ++ P +EVRGE+Y+ K Sbjct: 126 AISLLYRDGYLVRGVTRGDGSAGEDITANVKTVKNIPLKLRGEGYPAELEVRGEIYLPKA 185 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255 F A+N + A G K + NPRNAA+G LR+L+P R L + +G Q+ Sbjct: 186 AFDAINKDAAAKGEKTFVNPRNAAAGSLRQLDPRITAKRALEMCCYSVGYFEGELPGTQH 245 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L +++ G +N+ ++ A+ + YY + S+R LPY+IDG+V+KV+ LQ++L Sbjct: 246 DILTQLQQWGLKINSQMKLASGAQECLDYYRHIMSVRDQLPYEIDGVVFKVNRIDLQQEL 305 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I+HKF + T LL +D Q+GRTG +TPVARL+PV +GG ++NATLHN Sbjct: 306 GFVSRAPRWAIAHKFPAHEEMTELLAVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHN 365 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L D+ +GD V+++RAG+VIP+VV ++ + R +A P P CP Sbjct: 366 MDEIRRL-----------DVHIGDTVIIRRAGDVIPQVVSVVQDRRPENAVPVDRPEHCP 414 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S V++ G+ VA RC+GGL CSAQ+ E +KHF SR A +I+GLG + ++ Sbjct: 415 VCGSDVLQ----LEGEAVA--RCSGGLYCSAQRKEAIKHFASRKAMDIDGLGDRLVELLV 468 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + E I PA +++L+ + + G+ S NL ++I + + RFI+ Sbjct: 469 EKE----LIDSPASLYSLK------APDVAGLERMGEKSAQNLINAIEASKQTTFARFIY 518 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A+ LA+++ + Q L+ P +G I A I F Sbjct: 519 ALGIREVGEATAKVLAQHFPTLDLLKQATEE----------DLVEAPDIGPISAGHIRSF 568 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKAQEYVT 671 +Q N+ ++ALL + + E V S + + V TG L R +A++ +T Sbjct: 569 FQQEHNLETIDALLNQ---GVSWPEVVVRSTETLPLSGQTAVVTGVLADYSRDEAKDLLT 625 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 +LGA VS +S KT ++ G+ GSKL KAQ LGVK+++E+ F LL+++ L Sbjct: 626 RLGAKVSGSVSAKTGFVVAGEKAGSKLTKAQDLGVKVLDEDAFKQLLEEHQAHL 679 >gi|53719773|ref|YP_108759.1| DNA ligase [Burkholderia pseudomallei K96243] gi|167816389|ref|ZP_02448069.1| DNA ligase [Burkholderia pseudomallei 91] gi|81379503|sp|Q63T07|DNLJ_BURPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52210187|emb|CAH36166.1| DNA ligase [Burkholderia pseudomallei K96243] Length = 691 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 268/726 (36%), Positives = 397/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE V H P LSL + ED+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IP +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++++++ + R +LPYD Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVGLDRFAEKSARNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S + + ND Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDALLEVND----- 568 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFT 655 VG I+A++I +F+ N +E L K P + + K +V T Sbjct: 569 -----VGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 TLLEGH 689 >gi|126453906|ref|YP_001066758.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a] gi|134277579|ref|ZP_01764294.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305] gi|167739178|ref|ZP_02411952.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 14] gi|167824768|ref|ZP_02456239.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 9] gi|167846299|ref|ZP_02471807.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei B7210] gi|167894881|ref|ZP_02482283.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 7894] gi|167903270|ref|ZP_02490475.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei NCTC 13177] gi|167919520|ref|ZP_02506611.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei BCC215] gi|217421846|ref|ZP_03453350.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576] gi|226198948|ref|ZP_03794511.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9] gi|237812814|ref|YP_002897265.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346] gi|242317106|ref|ZP_04816122.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b] gi|254179316|ref|ZP_04885915.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655] gi|254198094|ref|ZP_04904516.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13] gi|166215566|sp|A3NWN7|DNLJ_BURP0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126227548|gb|ABN91088.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a] gi|134251229|gb|EBA51308.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305] gi|169654835|gb|EDS87528.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13] gi|184209856|gb|EDU06899.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655] gi|217395588|gb|EEC35606.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576] gi|225929048|gb|EEH25072.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9] gi|237506455|gb|ACQ98773.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346] gi|242140345|gb|EES26747.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b] Length = 691 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 268/726 (36%), Positives = 397/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE V H P LSL + ED+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IP +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++++++ + R +LPYD Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFAEKSARNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S + + ND Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDALLEVND----- 568 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFT 655 VG I+A++I +F+ N +E L K P + + K +V T Sbjct: 569 -----VGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 TLLEGH 689 >gi|126441747|ref|YP_001059474.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 668] gi|166215567|sp|A3NAV3|DNLJ_BURP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126221240|gb|ABN84746.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 668] Length = 691 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 267/726 (36%), Positives = 397/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE V H P LSL + ED+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 LPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++++++ + R +LPYD Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFAEKSARNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S + + ND Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDALLEVND----- 568 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFT 655 VG I+A++I +F+ N +E L K P + + K +V T Sbjct: 569 -----VGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 TLLEGH 689 >gi|194289797|ref|YP_002005704.1| DNA ligase [Cupriavidus taiwanensis LMG 19424] gi|254781303|sp|B3R2C2|DNLJ_CUPTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193223632|emb|CAQ69639.1| DNA ligase [Cupriavidus taiwanensis LMG 19424] Length = 709 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 257/707 (36%), Positives = 387/707 (54%), Gaps = 64/707 (9%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +E+ H+ YY P + D+EYDAL A+ P+L + P+ P ++GGE Sbjct: 31 LREELDRHNYQYYVLDAPTVPDAEYDALFSELMALELEHPEL---QTPDSPTQRVGGEPL 87 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITR----IYRFWQKKDDNSIF-------FTLEP 132 + V H +P LSL + ED+ F R + R + +F + E Sbjct: 88 SAFDSVRHRVPMLSLNNAFADEDVLNFDRRCAQGLGRTAPAAGEADLFSAADAVEYACEL 147 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K DG +++RYE G+ V AA RGDG +GEDV+ +R I IP L P ++EVRGEV+ Sbjct: 148 KFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLKLRGQAPAVLEVRGEVF 207 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + DF LN G K + NPRNAA+G LR+L+P R L+FF +GLG+ + Sbjct: 208 MFRRDFDKLNARQAEAGEKTFVNPRNAAAGSLRQLDPRITARRPLSFFAYGLGELQGVER 267 Query: 252 KGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + ML LG PV G++ +Y ++ R LPYDIDG+VYKV+ + Sbjct: 268 PPTHSAMLDGFAALGLPVCKDRAVVKGAQGLLDFYRDIGKRRDDLPYDIDGVVYKVNALA 327 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG +R+PR+ ++HKF ++ +T + DI++Q+GRTG +TPVARL PV +GG +TN Sbjct: 328 EQERLGFVSRAPRFALAHKFPAQEMTTVVEDIEVQVGRTGAITPVARLRPVFVGGVTVTN 387 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED I+ +D+ VGD V+V+RAG+VIP+VV ++ R DA+ F Sbjct: 388 ATLHNEDEIR-----------RKDVHVGDTVIVRRAGDVIPEVVAVVAERRPADARAFVM 436 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S + + + A RCTGGL C+AQ+ + L HF R A +IEGLG + Sbjct: 437 PTACPVCGSHIEKLEDE------AIARCTGGLICAAQRKQSLLHFAQRRAMDIEGLGDRL 490 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ +R PAD++ L K+ + D S NL +I+K R ++ Sbjct: 491 VEQLVDQG----IVRTPADLYKL------GVAKLAALERMADKSAANLVAAIDKSRATTM 540 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIRHVG A+ LA+++ +++ ++A D +L+ V VG ++AQ Sbjct: 541 NRFIFALGIRHVGEATAKDLARHF-------GKLDALMAA---DEAALLEVNDVGPVVAQ 590 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS------SEIENKKLVFTGTLQKIQRH 664 +I F+ P N+ +E L + G H + + K V TGTL + R Sbjct: 591 SIAHFFAEPHNVEVIEQLR-----AAGVHWPESEPVAKSPAPLSGKTFVLTGTLPTLSRE 645 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 A+E + GA V+ +S+KTD ++ G GSKL+KA+ LGV +++E Sbjct: 646 DAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDE 692 >gi|53723744|ref|YP_103200.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344] gi|67639492|ref|ZP_00438344.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4] gi|121600643|ref|YP_993378.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1] gi|124385135|ref|YP_001029185.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10229] gi|126450807|ref|YP_001080885.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10247] gi|167004074|ref|ZP_02269848.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20] gi|254178005|ref|ZP_04884660.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399] gi|254206491|ref|ZP_04912843.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU] gi|254358100|ref|ZP_04974373.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280] gi|81604820|sp|Q62JB9|DNLJ_BURMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215563|sp|A3MKU9|DNLJ_BURM7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215564|sp|A2SB66|DNLJ_BURM9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215565|sp|A1V575|DNLJ_BURMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52427167|gb|AAU47760.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344] gi|121229453|gb|ABM51971.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1] gi|124293155|gb|ABN02424.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10229] gi|126243677|gb|ABO06770.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10247] gi|147753934|gb|EDK60999.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU] gi|148027227|gb|EDK85248.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280] gi|160699044|gb|EDP89014.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399] gi|238520039|gb|EEP83503.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4] gi|243060513|gb|EES42699.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20] Length = 691 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 268/726 (36%), Positives = 396/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE V H P LSL + ED+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IP +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++++++ + R +LPYD Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLTAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVALDRFAEKSARNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S + + ND Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDALLEVND----- 568 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFT 655 VG I+A++I +F+ N +E L K P + + K +V T Sbjct: 569 -----VGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 TLLEGH 689 >gi|91788454|ref|YP_549406.1| DNA ligase [Polaromonas sp. JS666] gi|123164833|sp|Q12AD4|DNLJ_POLSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91697679|gb|ABE44508.1| DNA ligase, NAD-dependent [Polaromonas sp. JS666] Length = 706 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 263/718 (36%), Positives = 391/718 (54%), Gaps = 60/718 (8%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 +++L E+ H YY +P I DSEYD L + + A+P+L P+ P ++GG Sbjct: 23 MAALRAELHAHAHRYYVLDEPTIPDSEYDRLFKELQDLEAAYPELL---TPDSPTQRVGG 79 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQKKDDNS-IFFTLEPKIDGT 137 + V H +P LS+ + E + F TR+ + + N + + E K DG Sbjct: 80 KPLDQFASVRHKVPMLSIRTETDTEATGAQNFDTRVRKELGLTESNPPVEYVAELKFDGL 139 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++RYE G V AA RGDG GE+V+ IR I IP L + P ++EVRGEVY+ + D Sbjct: 140 AMSLRYEHGVLVQAATRGDGEVGEEVTQNIRTIRQIPLKLPSDAPPVLEVRGEVYMRRAD 199 Query: 198 FLALND---EMIAVG---RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT---- 246 F ALND E IA G K + NPRNAA+G +R+L+P R L+FF +G+G+ Sbjct: 200 FEALNDKQREKIAAGAKGEKTFVNPRNAAAGAVRQLDPAIAAQRPLSFFAYGVGEVVLEA 259 Query: 247 -----SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + E+LQ ++ GFPV + A+ +++++ M R +LPYDIDG Sbjct: 260 EQANPKNPWVATHMELLQALKSWGFPVAAQTKIAHGASELIAFHQAMGQQRDSLPYDIDG 319 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKV+ +LQKQ+G +R PRW ++HK+ ++ T +L I++Q+GRTG LTPVA+L PV Sbjct: 320 VVYKVNSLALQKQMGFVSREPRWAVAHKYPAQEQLTTVLGIEVQVGRTGKLTPVAKLAPV 379 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG +TNATLHNED + +D+RVGD V+V+RAG+VIP+VV ++ ++R Sbjct: 380 FVGGVTVTNATLHNEDEAR-----------RKDVRVGDTVIVRRAGDVIPEVVSVLPDKR 428 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P A F+ P CP+C S VR+ A +RCTGGL C AQ+ E + H+ R A Sbjct: 429 LPGAPMFTMPRQCPVCGSDAVREEGE------ADYRCTGGLFCGAQRKEAILHYAHRRAV 482 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 IEGLG + ++ A IR D++ L T + ++ + S NL + Sbjct: 483 EIEGLGDKLVEQLVD----ANVIRTLPDLYKL------GLTALASLDRMAEKSANNLLKA 532 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + K + +L RF+F LGIRHVG A+ LA+++ N+ A + L+ V Sbjct: 533 LEKSKQTTLPRFLFGLGIRHVGEATAKELARHF----------GNLDAIMDATQEQLLAV 582 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VG I+AQ+I F+ P N VE L V G + K V TGTL Sbjct: 583 SDVGSIVAQSIRTFFDQPHNREVVEQLRACGVHWEEGEPAAVAPKPLSGKTFVITGTLPT 642 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A++ V G V+ +S+KTD ++ G GSKL KAQ+LG+ +++E + LL Sbjct: 643 LSRDEAKDKVEAAGGKVAGSVSKKTDYVVAGTEAGSKLVKAQELGIAVIDEAALMRLL 700 >gi|186476101|ref|YP_001857571.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815] gi|254781277|sp|B2JID1|DNLJ_BURP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|184192560|gb|ACC70525.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815] Length = 683 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 260/710 (36%), Positives = 400/710 (56%), Gaps = 57/710 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ + YY +P + D+EYD L + I PDL P+ P ++GGE+ Sbjct: 21 LRDELERANYAYYVLDQPDLPDAEYDRLFKELQQIESEHPDLIT---PDSPTQRVGGEVA 77 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 V H +P LSL ++ ED+ F R+ + + E K DG I++RY Sbjct: 78 SGFRPVVHDMPMLSLNNGFSDEDIAAFDKRVSDTLHH---TPVDYACELKFDGLAISLRY 134 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALN 202 G+F AA RGDG +GEDV+ +R I +IP ++ +P++++VRGEV + + DF LN Sbjct: 135 VDGQFTQAATRGDGATGEDVTENVRTIRSIPLKLKGKRVPKLVDVRGEVLMFRRDFDKLN 194 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY-EMLQK 260 G++ +ANPRNAA+G LR+L+P R L+FF +G+G I G + E+L Sbjct: 195 QRQRDAGQREFANPRNAAAGSLRQLDPKMTAQRPLSFFAYGIGVLDGIEMPGTHSELLDW 254 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 +G PVN+ G++ +++++ R LPYDIDG+VYKV+ Q LG +R Sbjct: 255 YHEMGLPVNSERAVVQGAEGVLGFFHKVGEKRDKLPYDIDGVVYKVNRRDEQDALGFVSR 314 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLHNED ++ Sbjct: 315 APRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNEDEVR 374 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 +DIR+GD V+V+RAG+VIP+VV ++ R PDA+ F P+ CP+C S Sbjct: 375 -----------RKDIRIGDTVIVRRAGDVIPEVVGALLERRPPDAREFVMPTQCPVCGSA 423 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 + R + A RC+GGL C AQ+ + L HF R A +I+GLG++ +D + Sbjct: 424 IERLPDE------AIARCSGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELN-- 475 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 +R PAD+F L + + F + S NL DS+ K ++ +L RFI++LGIR Sbjct: 476 --LVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTTLARFIYALGIR 527 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 HVG A+ LA+++ S ++ I++ ++ L+ V VG I+A+AI +F+ Sbjct: 528 HVGESTAKDLARHFGS-------LDPIMSATVEE---LLEVNDVGPIVAEAIHQFFAEEH 577 Query: 621 NICAVEAL-------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 N +E L E P+ K + K +V TGTL + R +A+E + Sbjct: 578 NRTVIEQLRAPGKVTWAEGPPA----PKAPQGVLAGKTVVLTGTLPNMGRDEAKELLEAA 633 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ T Sbjct: 634 GAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKLLEGQTT 683 >gi|58584805|ref|YP_198378.1| NAD-dependent DNA ligase, Lig [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497767|sp|Q5GS88|DNLJ_WOLTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|58419121|gb|AAW71136.1| NAD-dependent DNA ligase, Lig [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 683 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 272/718 (37%), Positives = 415/718 (57%), Gaps = 65/718 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E+ +E + L +ISYHD Y+Q SKP I D+EYD LK++ + P ++D Sbjct: 4 LEKMIEEFTKLRDQISYHDVLYHQKSKPEIADAEYDKLKQKLVEMEGQLPGACVTQDG-- 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 +G + K+ H P LSLE ++ + + +F++RI RF +++ I EPK Sbjct: 62 ----VGAAPDEKFSKIKHREPMLSLENAYDEQGVERFLSRIKRFLIEEE---IEVFCEPK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG + YE G+FV AA RGDG GEDV+ + I PR L ++ + +EVRGE+YI Sbjct: 115 IDGLSFSAVYEDGRFVKAATRGDGFIGEDVTRNVATIKGFPRFLQ-DVQDRLEVRGEIYI 173 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + +DFL LN + +ANPRNAA+G L++L+ + R L +F + L E K Sbjct: 174 NNSDFLKLNKD------NEFANPRNAAAGSLKQLDVSITANRPLKYFAYSLIGGKE---K 224 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E+L ++ LGF VN N G++ +YN++ + R +L YDIDG+VYKV++ LQ Sbjct: 225 SQSEVLNRLESLGFCVNEHRSLTNNLSGMLEFYNKVYNCRYSLDYDIDGIVYKVNDLILQ 284 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG ++PR +++KF+ A T+L I IQ+GRTG+LTPVA L PVNIGG L++ A Sbjct: 285 SRLGSTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLIPVNIGGVLVSRAN 344 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+D IK +D+R GD V +KRAG+VIP++V + RH DA F FP Sbjct: 345 LHNQDEIK-----------RKDVREGDIVTIKRAGDVIPQIVRVDKGSRHADAPGFVFPE 393 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +V + AA RC+ L C AQ + +L HFVS+ AF+I GLG++Q+ Sbjct: 394 ICPECGGKVQAE--------GAAIRCSEELTCKAQIIGKLSHFVSKGAFDIFGLGEKQIK 445 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF+ D +IP DIF L+ R + K + +G+ S+ NL ++I RR I+L+R Sbjct: 446 FFY---DLGLIKQIP-DIFNLEERLNEFSLKEQP--DWGERSIANLLNAIQNRRVITLDR 499 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS-------------LI 599 FIFSLGIR +G A LA YY+SY N+ + +++++ + + L+ Sbjct: 500 FIFSLGIRFIGQVAAELLANYYVSYNNWYNSMIKLLSNDAEVGVGGVEKKIAKSFSDELV 559 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTG 656 + +G+ +A+++ F+ NI +LK+++ + + + +S + NK +VFTG Sbjct: 560 GIDGIGEKVAESLKSFFSKEHNI----KMLKDLTDYLQILSVNSNSSNSVLNNKVIVFTG 615 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 L + R +A+ LGA VS+ LS K D ++ G+ PG+K +KA +LGV I+NE+Q+ Sbjct: 616 KLLTMSRGEAKVRAKALGAKVSSNLSAKIDYLVAGEKPGNKYKKAVELGVGILNEDQW 673 >gi|327394702|dbj|BAK12124.1| DNA ligase LigA [Pantoea ananatis AJ13355] Length = 672 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 255/713 (35%), Positives = 413/713 (57%), Gaps = 51/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++ ++ L + +H+ Y+ P + D+EYD L R + PDL P+ Sbjct: 1 MKSVQEHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ ++ R F R+ + DD + + E K Sbjct: 58 PTQRVGAAPLMVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSSDD--LVYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE++++ +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGLLTRAATRGDGTTGENITSNVRTIRAIPLRLKGENIPARVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 +++N F LN E K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 MTQNGFEKLNAEARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGLLEGGEM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + LQ+ + G PV++ +R + +++Y+E+ + R+ L +DIDG+V KVD Sbjct: 236 -PRSHMARLQQFKAWGLPVSDRIRLVHNVDEALAFYHEVDAQRAELGFDIDGVVIKVDSQ 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG AR+PRW ++ KFA ++ T + D++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 DLQEKLGFVARAPRWAVAFKFAAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVMVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++V+ER DA+ Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVVSERPEDAREIL 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FPS CP+C S D+ G+ V RCTGGL C AQ+ E LKHFVSR A ++EG+G + Sbjct: 404 FPSHCPVCGS----DVERVEGEAVT--RCTGGLICGAQRKEALKHFVSRRAMDVEGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E ++ PAD+F L R T ++ G S N+ D++ K ++ + Sbjct: 458 IIDQLVEKE----YVKTPADLFRLTRETLTGLDRM------GAKSAQNVVDALEKAKSTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF+++LGIR VG A +LA ++ Q + D +LI V VG ++A Sbjct: 508 LARFLYALGIREVGEATAANLANHFGELQKVM----------DADLDALIAVQDVGTVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVS---PSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + + F + N + L++++ P + + + S K +V TG+L ++ R Sbjct: 558 KHVRHFMEEESNRDVIRQLVEDIGINWPQVMVVKAEEIDSPFAGKTVVLTGSLSQMNRDD 617 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ +T+LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 618 AKARLTELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670 >gi|291618312|ref|YP_003521054.1| LigA [Pantoea ananatis LMG 20103] gi|291153342|gb|ADD77926.1| LigA [Pantoea ananatis LMG 20103] Length = 672 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 255/713 (35%), Positives = 413/713 (57%), Gaps = 51/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++ ++ L + +H+ Y+ P + D+EYD L R + PDL P+ Sbjct: 1 MKSVQEHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ ++ R F R+ + DD + + E K Sbjct: 58 PTQRVGAAPLMVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSSDD--LVYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G AA RGDG +GE++++ +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGLLTRAATRGDGTTGENITSNVRTIRAIPLRLKGENIPARVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 +++N F LN E K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 MTQNGFEKLNAEARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGLLEGGEM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + LQ+ + G PV++ +R + +++Y+E+ + R+ L +DIDG+V KVD Sbjct: 236 -PRSHMARLQQFKAWGLPVSDRIRLVHNVDEALAFYHEVDAQRAELGFDIDGVVIKVDSQ 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG AR+PRW ++ KFA ++ T + D++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 DLQEKLGFVARAPRWAVAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVAGVMVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++V+ER DA+ Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVVSERPEDAREIL 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FPS CP+C S D+ G+ V RCTGGL C AQ+ E LKHFVSR A ++EG+G + Sbjct: 404 FPSHCPVCGS----DVERVEGEAVT--RCTGGLICGAQRKEALKHFVSRRAMDVEGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E ++ PAD+F L R T ++ G S N+ D++ K ++ + Sbjct: 458 IIDQLVEKE----YVKTPADLFRLTRETLTGLDRM------GAKSAQNVVDALEKAKSTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF+++LGIR VG A +LA ++ Q + D +LI V VG ++A Sbjct: 508 LARFLYALGIREVGEATAANLANHFGELQKVM----------DADLDALIAVQDVGTVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVS---PSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + + F + N + L++++ P + + + S K +V TG+L ++ R Sbjct: 558 KHVRHFMEEESNRDVIRQLVEDIGINWPQVMVVKAEEIDSPFAGKTVVLTGSLSQMNRDD 617 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ +T+LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 618 AKARLTELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670 >gi|251793989|ref|YP_003008721.1| NAD-dependent DNA ligase LigA [Aggregatibacter aphrophilus NJ8700] gi|247535388|gb|ACS98634.1| DNA ligase, NAD-dependent [Aggregatibacter aphrophilus NJ8700] Length = 671 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 261/712 (36%), Positives = 409/712 (57%), Gaps = 67/712 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L + + YH+ Y+ +P I DSEYD L + A+ P L ++ P + Sbjct: 6 QQQIDDLRKTLRYHEYQYHVLDEPQIPDSEYDRLFHQLKALEQQHPALITADSPT---QR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G ++ H +P LSL+ ++ E+ F+ RI D +F F E Sbjct: 63 VGARPLSEFAQIKHELPMLSLDNAFSDEEFLAFVKRI-------QDRLVFAPEPLTFCCE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G AA RGDG +GED++ IR I IP ++L+ N P +EVRGE Sbjct: 116 PKLDGLAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249 V++ + F LN+ + G K +ANPRNAA+G LR+L+P + R L F + +G I Sbjct: 176 VFMPHDGFERLNERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQRI 235 Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +E LQ ++ +G PVN+ +R + ++++Y M RS+L YDIDG V KV++ Sbjct: 236 DLPPTHFERLQWLKSIGVPVNSEIRLCDGIENVLNFYRTMMEKRSSLGYDIDGTVLKVND 295 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ++LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+L+PV + G + Sbjct: 296 IELQQRLGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTV 355 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ + R +A+ Sbjct: 356 SNATLHNGDEIERL-----------NIAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQI 404 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S +VR G+ VA RCTGGL C+AQ+ E LKHFVSR A NI+G+G Sbjct: 405 VFPTHCPVCDSLIVR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMNIDGVGA 458 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L T+ T++E + G S N S+ K ++ Sbjct: 459 KLIEQLVDRE----LVHTPADLFKLDL---TTITRLERM---GPKSAENALASLEKAKHT 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFIF+LGIR VG IA +LA ++ + + A N D L +VP VG+++ Sbjct: 509 TLARFIFALGIRDVGEAIALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVV 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKIQ 662 A I F++ N+ V L+ + G H + V + ++K +V TGTL ++ Sbjct: 559 ANRIFVFWREEHNVAVVNDLIAQ-----GVHWETVEVQEVKENPFKDKTVVLTGTLSQMG 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R+ A+ + QLGA VS +S KTD +I G+ GSKL KA +LGV++++EE+F Sbjct: 614 RNDAKVLLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEF 665 >gi|323526494|ref|YP_004228647.1| NAD-dependent DNA ligase [Burkholderia sp. CCGE1001] gi|323383496|gb|ADX55587.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1001] Length = 688 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 262/705 (37%), Positives = 392/705 (55%), Gaps = 49/705 (6%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ + YY +P + D+EYD L + ++I PDL P+ P ++GGE Sbjct: 21 LRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAQHPDLIV---PDSPTQRVGGEAA 77 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW---QKKDDNSIFFTLEPKIDGTMIT 140 V H P LSL + ED+ F R+ K+ + + E K DG I+ Sbjct: 78 SGFEPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGNNAKEPPVPVDYATELKFDGLAIS 137 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 +RY G FV AA RGDG +GE+V+ IR + +IP ++ +P I++VRGEV + K DF Sbjct: 138 LRYVDGVFVQAATRGDGTTGENVTENIRTVRSIPLKLKGKRVPHILDVRGEVLMFKRDFE 197 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY-EM 257 LN+ A G K +ANPRNAA+G LR+L+P R L+FF +G+G + + E+ Sbjct: 198 RLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMEMPATHSEL 257 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L + LG PVN+ G+++++ + R LPYDIDG+VYKV+ Q LG Sbjct: 258 LDWYKELGLPVNSERAVVKGAEGLLAFFRAVGEKRDKLPYDIDGVVYKVNRRDEQDALGF 317 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLHNED Sbjct: 318 VSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNED 377 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 ++ +DIR+GD V+V+RAG+VIP+VV ++ R DA+ F P+ CP+C Sbjct: 378 EVR-----------RKDIRIGDTVIVRRAGDVIPEVVSALLERRPDDAREFVMPTHCPVC 426 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S + R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D + Sbjct: 427 GSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQ 480 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 +R PAD+F L + + + F D S NL DS+ K ++ +L RFI++L Sbjct: 481 N----LVRTPADLFNL------GFSTLAELDRFADKSAQNLLDSLEKAKHTTLARFIYAL 530 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG A+ LAK++ S + + ND VG ++A++I +F+ Sbjct: 531 GIRHVGESTAKDLAKHFGSLDPIMEASVEALLEVND----------VGPVVAESIHQFFA 580 Query: 618 NPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 N +E L K P K + K +V TGTL + R +A+E + G Sbjct: 581 EEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGTLPTLAREEAKEMLEAAG 640 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 641 AKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKLLE 685 >gi|183599716|ref|ZP_02961209.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827] gi|188021975|gb|EDU60015.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827] Length = 671 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 251/709 (35%), Positives = 404/709 (56%), Gaps = 49/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ L +L+Q++ +H+ Y+ P I D+EYD L AI P+ S+ P + Sbjct: 4 KQHLDTLKQQLRHHEYQYHVLDAPEIPDAEYDKLMEELKAIEAEHPEWITSDSPT---QR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V H IP LSL+ +++ E F R+ + KD F E K+DG Sbjct: 61 VGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRD--RLKDQQEQTFCCELKLDGL 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ YE G+ V AA RGDG GE++++ +R I IP R+ NIP +E+RGEV++ + Sbjct: 119 AVSLLYENGELVQAATRGDGTVGENITSNVRTIRAIPLRLTGENIPARVEIRGEVFMPQK 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFAKGQ 254 F ALN+E G K +ANPRNAA+G LR+L+P R L F+ +G+G E Sbjct: 179 GFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGETLPDTH 238 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE L + + G PV+ V+ ++ +Y+E++ R TL +DIDG+V K+++ + Q++ Sbjct: 239 YERLMQFKKWGLPVSEYVQLRTGAQAVLDFYHEIEKARPTLGFDIDGVVIKINDIATQEE 298 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW + KF ++ T L D++ Q+GRTG +TPVARLEPV + G ++NATLH Sbjct: 299 LGFVSRAPRWATAFKFPAQEQMTLLKDVEFQVGRTGAITPVARLEPVQVAGVTVSNATLH 358 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L + +GD V+++RAG+VIP++V ++ +ER D++ FP+ C Sbjct: 359 NADEIERL-----------GVHIGDTVVIRRAGDVIPQIVSVVESERPADSREIVFPTHC 407 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + +D Sbjct: 408 PVCGSDVER----VEGEAVA--RCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQL 461 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E ++ PAD++ Q S + + G S NL +++NK ++ +L RFI Sbjct: 462 VEKE----YVKNPADLY------QLSAGILTGLDRMGPKSAQNLVEALNKSKSTTLARFI 511 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG A +LA +Y + + D SL V VG ++A+ +V Sbjct: 512 YALGIREVGEATAANLAAHYGTLEALMAA----------DEESLKTVQDVGHVVAKHVVN 561 Query: 615 FYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F++ N ++AL+ + + ++ + S K +V TG+L ++ R +A++ + Sbjct: 562 FFREEHNQTVIQALIDKANIHWPEAVAVDVSTIDSPFAGKTVVLTGSLSQLTRDEAKDKL 621 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA VS +S+KT ++I G+ GSKL KA +LG+ +++E + + LL+ Sbjct: 622 VALGAKVSGSVSKKTHLVIAGEAAGSKLAKANELGIPVIDENELIRLLE 670 >gi|90021526|ref|YP_527353.1| DNA ligase (NAD+) [Saccharophagus degradans 2-40] gi|123090491|sp|Q21JI8|DNLJ_SACD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89951126|gb|ABD81141.1| DNA ligase, NAD-dependent [Saccharophagus degradans 2-40] Length = 674 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 262/706 (37%), Positives = 407/706 (57%), Gaps = 47/706 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L SL+ +I+YH+ YY P + D+EYD L + AI FP+L +ED P ++G Sbjct: 10 KLESLKNQINYHNKLYYVLDAPELPDAEYDKLFQELQAIEQQFPELV-TED--SPTQRVG 66 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 S + H P LSL+ ++N+E+L F RI + D S+ ++ EPK DG Sbjct: 67 AAPLDSFASIEHKRPMLSLDNVFNVEELFAFDKRIRD--RINADASLEYSCEPKFDGIAA 124 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198 ++ YE G+ AA RGDG GED++ +R I ++P ++ NIP ++EVRGEVY+ K F Sbjct: 125 SLLYENGRLKTAATRGDGTVGEDITQNMRTIGSVPLKLEGNNIPAVLEVRGEVYMPKAGF 184 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTSEIFAKGQY 255 L +N+E +A K + NPRNAA+G LR+LNP R L F + +G + E+ A Y Sbjct: 185 LRINEEALAKNEKTFVNPRNAAAGSLRQLNPQITAKRPLVFCAYNVGVVEGGELPAT-HY 243 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L ++ GF V+ R A +YY+ +++ R +L YDIDG+V+KV+ F LQ++L Sbjct: 244 ETLTQLFEWGFLVSEERRIAKGIEECEAYYHYLEAKRESLAYDIDGIVFKVNAFDLQERL 303 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I+HKF ++A T L D++ Q+GRTG +TPVA+L+P+ +GG ++NATLHN Sbjct: 304 GFVSRAPRWAIAHKFPAQEALTVLHDVEFQVGRTGAITPVAKLQPIFVGGVTVSNATLHN 363 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 +D I+ L IRVGD V+V+RAG+VIP++V I+ ++R DA+ FP+ CP Sbjct: 364 KDEIERL-----------GIRVGDTVIVRRAGDVIPQIVSIVESKRPQDAREIKFPTACP 412 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S D+ G+ AA RCTGGL C AQ+ E +KHF SR A +I+GLG + +D Sbjct: 413 VCGS----DVESVEGE--AAIRCTGGLVCEAQRKESIKHFASRQAMDIDGLGDKIVDQLV 466 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 ++ + AD++TL + + G S NL +I + SL++ ++ Sbjct: 467 DNK----LVNDVADLYTL------DIPTLAGLERLGAKSAANLVAAIEASKQTSLDKILY 516 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG AR+LA ++ + +N ++ + LI V VG ++A +V+F Sbjct: 517 ALGIREVGRATARNLANHFCT-------LNKVMDATQE---QLIEVTDVGPVVAHYVVDF 566 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + N +E L+ + + +E V TG+L+ + R +A++ + LGA Sbjct: 567 FAQANNREVIEKLIAAGVNWPDIEKVDGVKPLEGTTYVLTGSLESLSRDEAKDKLQALGA 626 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 VS +S KT ++ G GSKL KA++LG+ I++E L LL+++ Sbjct: 627 KVSGSVSAKTTCVVAGPGAGSKLAKAEKLGLAILDEVGLLALLEEH 672 >gi|304312656|ref|YP_003812254.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1] gi|301798389|emb|CBL46613.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1] Length = 677 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 258/709 (36%), Positives = 399/709 (56%), Gaps = 46/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E +L ++ H+ YY P + DSEYD L +R A+ A PDL + P + Sbjct: 9 REEAQALRAQLQEHNYRYYVLDDPSVPDSEYDRLFQRLLALEQAHPDLITQDSPT---QR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + +V H +P LSL+ ++N +L F RI+ + K + + F EPK+DG Sbjct: 66 VGAAPLAAFKQVQHRVPMLSLDNVFNAAELLAFEKRIHD--RLKSEVPVDFVCEPKLDGL 123 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G FV A RGDG +GED++ +R + T+P R++ P +EVRGEVY+ K Sbjct: 124 AVSLLYRDGLFVQGATRGDGETGEDITQNLRTLSTVPLRLMGEGFPSELEVRGEVYMPKA 183 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255 LN + G K +ANPRNAA+G LR+L+P R L + +G+G + ++ Sbjct: 184 GLAELNQRQTSAGDKTFANPRNAAAGSLRQLDPRITAKRPLELYCYGIGHVAGGTLPARH 243 Query: 256 E-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L + GF VN +R A YY+ + + R L YDIDG+VYKVDE +LQ++ Sbjct: 244 SAILAALGKWGFRVNPEIRSAANAAECQRYYDALLARRDALAYDIDGVVYKVDELALQQR 303 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW I+HKF ++ TRLLD++ Q+GRTG +TPVARLEPV +GG ++NATLH Sbjct: 304 LGFVSRAPRWAIAHKFPAQEEITRLLDVEFQVGRTGAVTPVARLEPVYVGGVTVSNATLH 363 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L DI VGD V+V RAG+VIP++V ++ R P A P+ C Sbjct: 364 NMDEVARL-----------DIHVGDTVVVLRAGDVIPRIVRVLPERRPPYAPVVMLPAAC 412 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S + R+ G+ VA RC+GGL C AQ E +KHF +R A +I+GLG + +D Sbjct: 413 PVCGSAITRE----EGEAVA--RCSGGLFCPAQTKEAIKHFSARRAMDIDGLGDKIVDQL 466 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 D + AD+++L + ++ G+ S L +I K RN + +RF+ Sbjct: 467 V---DTGLVASV-ADLYSLASASLAALERM------GEKSADKLVAAIAKSRNTTFQRFL 516 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA++Y + A D SL+ VP +G + A+ IV+ Sbjct: 517 FALGIREVGEATAQTLARHY----------ETLDALLRADEASLLEVPDIGPVSARNIVQ 566 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+ P N ++ LL + +VS+ + ++ LV TG+L ++ R +A +++ L Sbjct: 567 FFAQPHNREVLDRLLAAEIHWPAPVKADVSALPLSDQTLVLTGSLSQLSRDEAGDHLRAL 626 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GA VS +S+ T + G+ GSKL +A+ LG+ + E++ + LL+++ Sbjct: 627 GAKVSGSVSKNTTAVYAGEKAGSKLARAESLGIPVYTEDELMSLLREHG 675 >gi|127513305|ref|YP_001094502.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4] gi|166216242|sp|A3QFJ5|DNLJ_SHELP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126638600|gb|ABO24243.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4] Length = 669 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 403/712 (56%), Gaps = 60/712 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + E+ L E++ H+ YY P I D+EYD L RR + P+LA ++ P + Sbjct: 5 QDEIKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALADSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE +VTH P LSL+ +++ E+ F R+ K ++ F EPK+DG Sbjct: 62 VGGEALSKFNQVTHLKPMLSLDNVFSEEEFNAFYKRV----GDKLPDTPAFCCEPKLDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 ++I Y G F AA RGDG GED++ +R I ++P R+ P ++EVRGEV++ K Sbjct: 118 AVSILYRDGVFERAATRGDGTVGEDITENVRTIKSVPLRLRGSGFPPLLEVRGEVFMPKA 177 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTSEIFAK 252 F A+ND+ A G K + NPRNAA+G LR+L+ +R L F+ + LG + A Sbjct: 178 AFEAVNDKARAKGEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPETWPLAA 237 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 +E L +++ G PV++ V+ +++YY ++ + RS L Y+IDG+V KV++ + Q Sbjct: 238 SHFEQLVQLKEWGCPVSSEVKVCADIPSVLAYYQDILTRRSELAYEIDGVVLKVNDIAQQ 297 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG A++PRW ++KF ++ T+L +D Q+GRTG +TPVARL+PV +GG ++NAT Sbjct: 298 QTLGFVAKAPRWATAYKFPAQEEITQLEGVDFQVGRTGAVTPVARLQPVFVGGVTVSNAT 357 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I L + +GD V+++RAG+VIP+VV ++ +R DAQ FP Sbjct: 358 LHNADEIARL-----------GVMIGDSVIIRRAGDVIPQVVAVVPEKRPSDAQAIQFPP 406 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S V R G+ VA RCTGGL C AQ+ E +KHF SR A +I+G+G + ++ Sbjct: 407 QCPVCGSDVER----VEGEAVA--RCTGGLVCEAQRKEAIKHFASRKALDIDGMGDKVVE 460 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 E + PAD+F L + + I + G S TNL +++ + + R Sbjct: 461 QLIDKE----LVASPADLFKL------TASAITMLDRMGMKSATNLVNALEAAKQTTFAR 510 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F++SLGIR VG A +LA Y+ + ++ Q D + ++V VG I+AQ + Sbjct: 511 FLYSLGIREVGEATAANLANYFKTLEHLKQA----------DAETFMKVDDVGVIVAQHL 560 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGTLQKIQRHKA 666 V F++ P N+ ++ LL+ G H ++ ++ + V TGTL ++ R+ A Sbjct: 561 VHFFEQPHNLEVIDGLLQ-----AGVHWPDIEEVAEEALSLKGQTWVLTGTLTQLNRNDA 615 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+++E + L +L Sbjct: 616 KAKLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQELGVKVIDEAELLAIL 667 >gi|37679166|ref|NP_933775.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus YJ016] gi|81758078|sp|Q7MMT5|DNLJ_VIBVY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|37197908|dbj|BAC93746.1| NAD-dependent DNA ligase [Vibrio vulnificus YJ016] Length = 669 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 254/709 (35%), Positives = 396/709 (55%), Gaps = 47/709 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E ++ L L+Q++ YH YY P I D+EYD + R AI P+ + P+ Sbjct: 3 ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPS-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG S +VTH IP LSL+ ++ E+L F+ R ++ F EPK+ Sbjct: 61 -QRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDA--FCCEPKL 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG +++ YE G V AA RGDG +GE+++ +R I ++P ++ P IEVRGEV++ Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGEVFM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251 K F LND G K + NPRNAA+G LR+L+ TR L F+ + +G I + Sbjct: 178 PKVGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGISLS 237 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Y+ +++ G P+ + N + ++Y ++ + R LPY+IDG+V K+D+ + Sbjct: 238 SSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDDIVI 297 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NA Sbjct: 298 QEKLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L + VGD V+++RAG+VIP++V ++ R D P FP Sbjct: 358 TLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKERRKGDENPIVFP 406 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S V R A RC+GGL C AQ+ E LKHFVSR A +++GLG + + Sbjct: 407 TSCPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKVI 460 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + E + PAD+FTL T ++ G S N+ +++N + +L Sbjct: 461 EQLVDKE----MVETPADLFTLSAGVLTVLERM------GPKSAQNIVNALNVAKETTLA 510 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF++SLGIR VG A +LA+++ + + + LI VP +G+++A+ Sbjct: 511 RFLYSLGIREVGEATAANLARHFKTLEAIQTATHE----------QLIEVPDIGEVVARH 560 Query: 612 IVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F+ +N V+AL+++ V P + + + K +V TGTL ++ R A+ Sbjct: 561 ITAFFAEEKNQRVVQALIEQGIVWPPVEELGSEIPQPLAGKVVVLTGTLTQLSRGDAKAA 620 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTDI+ G+ GSKL KAQ+LGV+I E+ L LL Sbjct: 621 LERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669 >gi|167563194|ref|ZP_02356110.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis EO147] Length = 691 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 263/729 (36%), Positives = 403/729 (55%), Gaps = 59/729 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + Q K + L E+ + YY +P + D+EYD L + PDL Sbjct: 5 PVEPPA-SQPAKRAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P P ++GGE+ V H P LSL ++ ED+ F R+ K D Sbjct: 63 --TPESPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLN 180 + + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + ++P ++ + Sbjct: 121 VTDPVEYACELKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVPLKLKGKH 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++ +++ + R +LPYD Sbjct: 241 AYGIGVLDGVDMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C S + R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTACPECGSGIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS++K ++ +L RFI++LGIRHVG A+ LAK++ S + ND Sbjct: 514 IDSLDKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASIEALLEVND----- 568 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKL 652 VG I+A++I +F+ N +E L P R + V + K + Sbjct: 569 -----VGPIVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGV---LAGKTV 620 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++EE Sbjct: 621 VLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEE 680 Query: 713 QFLFLLQQY 721 LL+ + Sbjct: 681 GMHKLLEGH 689 >gi|206579402|ref|YP_002237241.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342] gi|288934177|ref|YP_003438236.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22] gi|254781350|sp|B5XVT4|DNLJ_KLEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206568460|gb|ACI10236.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342] gi|288888906|gb|ADC57224.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22] Length = 671 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 256/715 (35%), Positives = 413/715 (57%), Gaps = 52/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + DD + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDD--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G + AA RGDG +GED+++ +R I TIP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A LQ+ + G PV++ V +T +++YY +++ R L +DIDG+V KVD Sbjct: 236 PAS-HSARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ Sbjct: 355 NATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+CQS V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCQSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L S K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------SAGKLTGLDRMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA ++ + + Q L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAALAAHFGTLEALEQA----------SIEELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 F+ N + LL E +P + + E+ + S K +V TG+L ++ R Sbjct: 558 THTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEE-IDSPFAGKTVVLTGSLSQLSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|153872826|ref|ZP_02001606.1| NAD-dependent DNA ligase [Beggiatoa sp. PS] gi|152070708|gb|EDN68394.1| NAD-dependent DNA ligase [Beggiatoa sp. PS] Length = 670 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 264/716 (36%), Positives = 407/716 (56%), Gaps = 65/716 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q +++ + L ++ + YY +P I DSEYD L R A+ +P L ++ P Sbjct: 6 QIQQQATQLRDTLNKQNYYYYVLDEPRIPDSEYDKLMRELHALEENYPALITADSPT--- 62 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + + +V H+IP LSL ++ ++++ F R+ ++ + + EPK+D Sbjct: 63 QRVGAKPLTAFSEVIHTIPMLSLNNAFDDKEVQDFDKRVR---ERLGGEPVEYVAEPKLD 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G I++RYE G V AA RGDGH GEDV+ ++ I TIP R+L + P ++EVRGEV++S Sbjct: 120 GLAISLRYENGLLVKAATRGDGHQGEDVTQNVKTIKTIPLRLLGDDYPRVLEVRGEVFMS 179 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K DF LN + G+K +ANPRNAA+G LR+L+ TR L F + +G + G Sbjct: 180 KADFEKLNQQQTLQGQKTFANPRNAAAGSLRQLDSRVTATRSLTFLAYTIG----VVEGG 235 Query: 254 QY-----EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++L ++ G P++ + + G + YY R LP++IDG+VYKV+ Sbjct: 236 ELPHRHNKILYTLQKWGIPISIYIEMVHDIQGCLKYYQNTLLYREKLPFEIDGVVYKVNS 295 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+ LG +R+PRW I+HK ++ T +L ID+Q+GRTG LTPVARL PV +GG + Sbjct: 296 LEQQEILGFVSRAPRWAIAHKLPAQEVLTEVLAIDVQVGRTGALTPVARLAPVTVGGVTV 355 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHN+D I ++IRVGD V+V+RAG+VIP++V ++ +R + QPF Sbjct: 356 TNATLHNQDEID-----------RKNIRVGDTVIVRRAGDVIPEIVGVLPEKRPNNTQPF 404 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CPIC S V R G+ VA RCTGGL C+AQ+ + ++HF SR A +I+GLG+ Sbjct: 405 VLPKKCPICDSDVTR----VEGEAVA--RCTGGLYCAAQRKQAIQHFASRRAMDIDGLGE 458 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ +E ++ ADI+TL Q N+ G S N+ ++ K ++ Sbjct: 459 KLVEQLINNE----LVKNIADIYTLNHEQWA------NLERMGPKSAENIIKALEKSQST 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + +F+++LGIR VG A +LA Q+F + + +I D L ++ +G I+ Sbjct: 509 TFAKFLYALGIREVGESTAHTLA------QSFGR-LEKLIPATEAD---LEQIQDIGPIV 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSE----IENKKLVFTGTLQKIQ 662 A+ IV F+Q N ++ L + IG H E +S + + V TGTL I Sbjct: 559 AKHIVTFFQQSHNREIIQRLQQ-----IGIHWPENEPTSTNTQPLSGQTFVLTGTLTNIT 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 RH+A+ + LGA VS +S+KT ++ G+ GSKLEKA+ LG+KI++E FL LL Sbjct: 614 RHEAKARLEALGAKVSGSVSKKTACVVAGEKAGSKLEKARTLGIKIIDENAFLALL 669 >gi|121533514|ref|ZP_01665342.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1] gi|121308073|gb|EAX48987.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1] Length = 673 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 264/715 (36%), Positives = 391/715 (54%), Gaps = 58/715 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++EQA +E L ++I YH+ YY P I D+E+DAL RR AI A+P L P+ Sbjct: 8 TLEQAAREAEQLRRQIHYHNHRYYVLDAPEISDAEFDALMRRLIAIEEAYPSLI---TPD 64 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG + H P LSL ++ EDLR F R+ R D + +E Sbjct: 65 SPTQRVGGAPAEGFDRTLHLTPMLSLANAFSAEDLRAFDNRV-RSGLGVDKAE--YVVEL 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191 KIDG + + YE G+ V A RGDG GEDV+A +R I ++P VL +N P ++EVRGEV Sbjct: 122 KIDGLAVNLVYEAGRLVRGATRGDGQYGEDVTANVRTIRSVPLVLPVNDPPALLEVRGEV 181 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+ + +F LN+E A G +ANPRNAA+G LR+L+P R L+ FV+ G+ + Sbjct: 182 YMPRREFDRLNEERQAAGEALFANPRNAAAGSLRQLDPRVTAQRALDIFVYATGRREGLN 241 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L+ + LGF VN R + ++ Y R LPYDIDGLV K++ + Sbjct: 242 METHAQTLETLAALGFKVNPHYRVFGSIEEVIDYCYSWNERRVDLPYDIDGLVIKLNSLA 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG A+ PRW I+ KF +QA+T + DI +++GRTG+LTP A+L PV + G+ ++ Sbjct: 302 GQARLGATAKDPRWAIAFKFPAEQATTIVEDIFVRVGRTGVLTPTAQLRPVRLAGSTVSR 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYI+ +DIR+GD V++ +AGEVIP+VV ++ + R+ +PF Sbjct: 362 ATLHNEDYIR-----------DKDIRIGDTVIIHKAGEVIPEVVAVVASRRNGSERPFVM 410 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S VVR+ AAH+C AC A E L HFVSRDA NIEGLG Sbjct: 411 PDRCPECGSPVVREPGE------AAHKCVNS-ACPAMLREGLIHFVSRDAMNIEGLGPAV 463 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + A +R AD++ L+ T ++ G S NL +I + L Sbjct: 464 IGSLLD----AGLVRDAADLYALRFDDLTKLDRM------GPKSAQNLLQAIEASKEAGL 513 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R +F+LGIR VGA+ A +LA+++ +I A L+ + +G IA+ Sbjct: 514 ARLLFALGIRFVGAKAAGTLARHF----------GSIHALERATVEELMALEEIGPKIAE 563 Query: 611 AIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 ++ ++ +P+NI V L + E P+ R + V TGTL + R Sbjct: 564 SVANYFADPQNIALVRKLEAAGVKVTEERPAAKRQ------TLAGITFVLTGTLATMTRA 617 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A E + G VS+ +S+KT+ ++ G+ GSKL+KA++LG+ ++ E +F LL+ Sbjct: 618 EATELIESRGGKVSSSVSKKTNYVVAGEEAGSKLDKARELGIPVLTEGEFKKLLE 672 >gi|253988889|ref|YP_003040245.1| NAD-dependent DNA ligase LigA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780339|emb|CAQ83500.1| DNA ligase [Photorhabdus asymbiotica] Length = 672 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 250/710 (35%), Positives = 408/710 (57%), Gaps = 51/710 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ +L + + +H+ Y+ P I D+EYD L + + P+L S+ P ++ Sbjct: 6 QQIENLRKTLRHHEYLYHVMDAPEISDAEYDRLMQELKTLEGQHPELITSDSPT---QRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +V H IP LSL+ +++ E F R+ + KD + E K+DG Sbjct: 63 GAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRD--RLKDTQDLVVCCELKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G+ V AA RGDG +GE++++ +R I +P R++ NIP IEVRGEV++ +N Sbjct: 121 VSLLYENGELVRAATRGDGTTGENITSNVRTINAVPLRLIGENIPARIEVRGEVFMPQNG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQ 254 F LN+E G K +ANPRNAA+G LR+L+P R L F +G+G + E+ A Sbjct: 181 FEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFLCYGVGVLEGGELPAS-H 239 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE L + + G PV++ VR + ++ +Y +++ RSTL +DIDG+V KV+ LQ+ Sbjct: 240 YERLMQFKKWGLPVSDKVRVCTDSNQVIDFYRNIENQRSTLGFDIDGVVIKVNSLELQET 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW + KF ++ T + DI+ Q+GRTG +TPVARLEPV + G ++NATLH Sbjct: 300 LGFVARAPRWATAFKFPAQEQMTIVRDIEFQVGRTGAITPVARLEPVQVSGVTVSNATLH 359 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L +R+GD V+++RAG+VIP+VV ++ + R D+ FP +C Sbjct: 360 NADEIERL-----------GLRIGDTVIIRRAGDVIPQVVGVVEDRRPQDSDEVIFPEYC 408 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C + D+ G+ VA RCTGGL C AQ+ E L+HFVSR A +++G+G++ +D Sbjct: 409 PVCGA----DIEKIEGEAVA--RCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKIIDQL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E + PAD+F L + K+ + G S N+ D++ K + + RF+ Sbjct: 463 VDKE----YVETPADLFRL------TAGKLTGLDRMGPKSAQNVVDALEKAKKTTFARFL 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG A +LA Y+ ++N + A + + +L V VG+++A+ +V Sbjct: 513 YALGIREVGEATAANLAAYF-------GDLNKLRAADEE---ALKEVQDVGEVVAKHVVH 562 Query: 615 FYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F+ P N ++ L+ + P + + S K +V TG+L ++ R +A++ + Sbjct: 563 FFNEPHNQKVIDDLIDNIGINWEPIAVTKAEKIDSPFAGKTIVLTGSLHQLSRDEAKDKL 622 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA V+ +S+KTD++I G+ GSKL KA +L + +++EE+ + LL + Sbjct: 623 IALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIAVIDEEEMIRLLGE 672 >gi|290508381|ref|ZP_06547752.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55] gi|289777775|gb|EFD85772.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55] Length = 671 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 256/715 (35%), Positives = 413/715 (57%), Gaps = 52/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + DD + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDD--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G + AA RGDG +GED+++ +R I TIP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A LQ+ + G PV++ V +T +++YY +++ R L +DIDG+V KVD Sbjct: 236 PAS-HSARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQITFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ Sbjct: 355 NATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+CQS V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCQSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L S K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------SAGKLTGLDRMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA ++ + + Q L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAALAAHFGTLEALEQA----------SIEELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 F+ N + LL E +P + + E+ + S K +V TG+L ++ R Sbjct: 558 THTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEE-IDSPFAGKTVVLTGSLSQLSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|94310370|ref|YP_583580.1| DNA ligase, NAD-dependent [Cupriavidus metallidurans CH34] gi|123383876|sp|Q1LNG5|DNLJ_RALME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|93354222|gb|ABF08311.1| DNA ligase, NAD(+)-dependent [Cupriavidus metallidurans CH34] Length = 721 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 269/744 (36%), Positives = 389/744 (52%), Gaps = 92/744 (12%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +E+ + YY P I D++YDAL A+ P+L P+ P ++GG Sbjct: 27 LREELERYSYQYYVLDAPTIPDADYDALFIELQALEAEHPELL---TPDSPTQRVGGAPL 83 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK---------------DD----- 123 + V H +P LSL + ED+ F R + + DD Sbjct: 84 SAFDSVRHRVPMLSLNNGFEDEDVINFDRRCAQGLGRATAAAPAAFATPAAPADDLFSAA 143 Query: 124 -----------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT 172 N++ + E K DG +++RYE G V AA RGDG +GEDV+A +R I Sbjct: 144 DAAEAAANTAGNAVEYACELKFDGLAMSLRYENGTLVQAATRGDGETGEDVTANVRTIKA 203 Query: 173 IPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TD 231 IP L P ++EVRGEV++ + DF LN G K + NPRNAA+G LR+L+P Sbjct: 204 IPLKLRGTAPSVLEVRGEVFMYRADFDKLNARQAESGEKTFVNPRNAAAGSLRQLDPRIT 263 Query: 232 ITRYLNFFVHGLGKTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290 R L+FF +G+G+ G + ML LG PV + R G++S++ E+ Sbjct: 264 AKRPLSFFAYGVGEMEGFDRPGTHSAMLDGFAKLGLPVCDERRVVRGAQGLLSFHREVGE 323 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R LPYDIDG+VYKV+ + Q+QLG +R+PR+ ++HKF ++ +T + DI++Q+GRTG Sbjct: 324 RRDQLPYDIDGVVYKVNAIAEQEQLGFVSRAPRFALAHKFPAQEMTTTVEDIEVQVGRTG 383 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVARL PV +GG +TNATLHNED I+ +D+ +GD V+V+RAG+VI Sbjct: 384 AITPVARLAPVFVGGVTVTNATLHNEDEIR-----------RKDVHIGDTVIVRRAGDVI 432 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+VV +++ R DA+ F P+ CP+C S V R G+ +A RCTGGL C+AQ+ + Sbjct: 433 PEVVAVVLERRPADARAFVMPTECPVCGSHVER----LEGEAIA--RCTGGLICAAQRKQ 486 Query: 471 RLKHFVSRDAFNIEGLG----KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN 526 L HF R A +IEGLG +Q +D +R PAD++ L K+ Sbjct: 487 ALLHFAQRRAMDIEGLGDKVVEQLVDLGI--------VRTPADLYKL------GVAKLAA 532 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 + D S +NL +I + R ++ RFIF+LGIRHVG A+ LAK++ N Sbjct: 533 LDRMADKSASNLVAAIEQSRETTMNRFIFALGIRHVGEATAKDLAKHFGKLDNLLAADEA 592 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHE 640 + ND VG ++AQ+I F P N+ +E L E P+ Sbjct: 593 ALLEVND----------VGPVVAQSIANFIAEPHNVEVIEQLRAAGVHWAETEPT----- 637 Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 + K V TGTL + R A+E + GA V+ +S+KTD ++ G GSKLEK Sbjct: 638 ARAPLPLAGKTFVLTGTLPTMSREDAKEKLEAAGAKVAGSVSKKTDYVVAGAEAGSKLEK 697 Query: 701 AQQLGVKIMNEEQFLFLLQQYNTT 724 AQ LGV +++EE L LL + Sbjct: 698 AQTLGVAVLDEEGMLKLLAEVGAA 721 >gi|289208742|ref|YP_003460808.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix] gi|288944373|gb|ADC72072.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix] Length = 697 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 262/718 (36%), Positives = 389/718 (54%), Gaps = 59/718 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L ++I +H+ YY P + D+E+DAL R + + PDL P+ P ++ Sbjct: 20 ERIEQLRRQIEHHNYRYYVLDDPEVSDAEFDALMRELEQLEADHPDLV---TPDSPTQRV 76 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIFFTLEP 132 GG V H +P LSL + +++R F R+ K + + ++ + EP Sbjct: 77 GGAPAAGFDTVRHRLPMLSLANGFESDEIRDFDRRVRERLAKQTGDPARAEQAVAYMAEP 136 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVR 188 K+DG I++ YE G+ V AA RGDG +GEDV+ +R + IP L + + P ++EVR Sbjct: 137 KLDGLAISLIYENGRLVQAATRGDGETGEDVTGNVRTVRPIPLHLGDRYTDDAPGVLEVR 196 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT- 246 GEV++ ++DF LN + A G++ + NPRNAA+G LR+L+P R L+FF + +G Sbjct: 197 GEVFMRRSDFERLNQGLEADGQRGFMNPRNAAAGSLRQLDPKVTARRPLSFFAYSVGHVE 256 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 Q L + LGFPV + G ++YY + R L Y+IDG+VYKV Sbjct: 257 GGTLPDTQSGTLDWLHRLGFPVCPERAVLDGVEGCLAYYERLAERRRELDYEIDGIVYKV 316 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D + Q+QLG +R+PRW I+HKF ++ +T L +D ++GRTG LTPVARLEPV +GG Sbjct: 317 DSLADQQQLGFVSRAPRWAIAHKFPAEEQTTTLRAVDFRVGRTGALTPVARLEPVLVGGV 376 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I +DIR+GDRV+V+RAG+VIP+VV ER D + Sbjct: 377 TVSNATLHNMDEI-----------ARKDIRIGDRVIVRRAGDVIPEVVGRAGGERPADTR 425 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP C S + R G+ VA RCTGGL C AQ+ E LKHFVSR A +IEG Sbjct: 426 AIEMPTRCPECDSHIER----PEGEAVA--RCTGGLVCPAQRREALKHFVSRRAMDIEGF 479 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ ++ ++ PAD+F L T ++E + G NL +++ + R Sbjct: 480 GEKLIEQLAD----GGIVQSPADLFAL------DTERLEALERVGPKLAENLVNALEQAR 529 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFIF+LGIR VG AR+LA YY Q D +L VP VG Sbjct: 530 ETTLARFIFALGIREVGEVTARNLATYYGDLDTLMQA----------DAEALQEVPDVGP 579 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS------PSIGRHEKNVSSEIENKKLVFTGTLQK 660 I+A+ I F+ P N+ + A L+E P+ EK ++ + V TG+ Sbjct: 580 IVAEHIANFFAEPHNLEVIRA-LREAGVHWPDPPARPAAEKGETAPLAGNTYVLTGSFDT 638 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A+ + GA V+ +S+KT +I G +PGSK+ KA+ L + I+ + LL Sbjct: 639 MTREEAKAALEARGAKVTGSVSKKTTAVIAGTDPGSKVTKAESLDIPILGPDDLAQLL 696 >gi|320157090|ref|YP_004189469.1| DNA ligase [Vibrio vulnificus MO6-24/O] gi|319932402|gb|ADV87266.1| DNA ligase [Vibrio vulnificus MO6-24/O] Length = 669 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 253/709 (35%), Positives = 398/709 (56%), Gaps = 47/709 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E ++ L L+Q++ YH YY P I D+EYD + R AI P+ + P+ Sbjct: 3 ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPS-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG S +VTH IP LSL+ ++ E+L F+ R ++ F EPK+ Sbjct: 61 -QRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDA--FCCEPKL 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG +++ YE G V AA RGDG +GE+++ +R I ++P ++ P IEVRGEV++ Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGEVFM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251 K F LND G K + NPRNAA+G LR+L+ TR L F+ + +G I + Sbjct: 178 PKAGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGISLS 237 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Y+ +++ G P+ + N + ++Y ++ + R LPY+IDG+V K+D+ + Sbjct: 238 SSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDDIVI 297 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NA Sbjct: 298 QEKLGFVARAPRWAIAYKFPAQEELTMLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L + VGD V+++RAG+VIP++V ++ + R D + FP Sbjct: 358 TLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKDRRKGDEKNIIFP 406 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S V R A RC+GGL C AQ+ E LKHFVSR A +++GLG + + Sbjct: 407 TACPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKVI 460 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + E + PAD+FTL T ++ G S N+ +++N + +L Sbjct: 461 EQLVDKE----MVETPADLFTLSAGVLTVLERM------GPKSAQNIVNALNVAKETTLA 510 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF++SLGIR VG A +LA+++ + + + LI VP +G+++A+ Sbjct: 511 RFLYSLGIREVGEATAANLARHFKTLEAIQTATHE----------QLIEVPDIGEVVARH 560 Query: 612 IVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F+ +N V+AL+++ V P++ + + K +V TGTL ++ R A+ Sbjct: 561 ITAFFAEEKNQRVVQALIEQGIVWPAVEELGSEIPQPLAGKVVVLTGTLTQLSRGDAKAA 620 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTDI+ G+ GSKL KAQ+LGV+I E+ L LL Sbjct: 621 LERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669 >gi|297538570|ref|YP_003674339.1| DNA ligase, NAD-dependent [Methylotenera sp. 301] gi|297257917|gb|ADI29762.1| DNA ligase, NAD-dependent [Methylotenera sp. 301] Length = 682 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 258/699 (36%), Positives = 392/699 (56%), Gaps = 47/699 (6%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L Q I+ +D YY P + DSEYD + R I P+L P+ P ++ G Sbjct: 26 LRQLIAQYDHEYYVLDAPSVPDSEYDLVYRDLQDIERQHPNLIT---PDSPTQRVSGSAA 82 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 + +TH LSL + +L F R+ ++ + + +EPK DG IT+ Y Sbjct: 83 NAFNSITHRQAMLSLNNAFEDSELEAFDKRVREALGQE---QVEYAVEPKFDGLAITLTY 139 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALN 202 E G F A RGDG++GEDV+ +R + +IP L+ N P+++EVRGEV + K DF LN Sbjct: 140 ENGIFTQGATRGDGYTGEDVTHNLRTVRSIPMRLNCENAPKLLEVRGEVLMFKRDFEKLN 199 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM-LQK 260 +A G K +ANPRNAA+G LR+L+ TR L+FF +GLG A G + M + Sbjct: 200 QAQLAKGEKLFANPRNAAAGSLRQLDAKITATRPLSFFAYGLGVADGAPALGSHSMAMDY 259 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + L FPV+ + G+ YY ++ +R+ LP+DIDG+VYKV++F+ Q +LG +R Sbjct: 260 LANLYFPVSEVRQLVMGVTGLRDYYQKIGQLRNELPFDIDGVVYKVNQFNQQNELGFVSR 319 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PRW I+HKF ++A T + DI++Q+GRTG +TPVARL PV +GG +TNATLHNED ++ Sbjct: 320 APRWAIAHKFPAQEALTVVEDINVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEVR 379 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 +D+ +GD V V+RAG+VIP+VV +++ R DA+ F P+ CP C S Sbjct: 380 -----------RKDVHIGDTVSVRRAGDVIPEVVSVVLERRLADARRFEMPTACPECGSH 428 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 +++ + A RCTGGL C AQ+ + + HF SR A +IEGLG++ +D + Sbjct: 429 ILKQADE------AVARCTGGLFCPAQRKQAITHFASRRAMDIEGLGEKLVDQLVE---- 478 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 A + ADI+ Q + + N+ S N+ D+++ + +L RFI++LG+R Sbjct: 479 ANLVHTLADIY------QLNLETLSNLDRMATKSAQNILDALDHSKITTLARFIYALGMR 532 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 +VG A+ LAK++ N+ A D SL+ V VG ++A++I F Sbjct: 533 NVGEATAKDLAKHF----------GNLSALMQADAASLLTVNDVGPVVAESISNFLGEQH 582 Query: 621 NICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 N + AL +S ++ + + K V TGTL + R A+E + +G VS Sbjct: 583 NQDVIRALQHAGISWPETEGKQLATGHLLGKSFVLTGTLPTLSRDAAKEMIEAVGGKVSG 642 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S+KTD ++ G + GSKL+KAQ+LG+ I++E L LL Sbjct: 643 SVSKKTDFVVAGSDAGSKLDKAQELGLVILDEAGLLALL 681 >gi|23098215|ref|NP_691681.1| NAD-dependent DNA ligase LigA [Oceanobacillus iheyensis HTE831] gi|81741485|sp|Q8CXK6|DNLJ_OCEIH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|22776440|dbj|BAC12716.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Oceanobacillus iheyensis HTE831] Length = 667 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 256/709 (36%), Positives = 403/709 (56%), Gaps = 54/709 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ EQ K++ SL + ++ + YY P + D+EYD R + FPDL Sbjct: 1 MNKEQVSKKIESLIELLNQYGYEYYVLDNPTVPDAEYDQKLRELQQLEQDFPDLVME--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG S KVTH++P LSL +N +DLR F R D I F E Sbjct: 58 NSPTQRVGGAPLASFQKVTHNVPMLSLGNAFNEQDLRDFARRA----SNGTDQPISFVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE GKFV A RGDG GED+++ ++ I +IP LS+ +EVRGE Sbjct: 114 LKIDGLAISLTYENGKFVRGATRGDGTIGEDITSNLKTIRSIP--LSIKEQGTLEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ FLALN+ +P+ANPRNAA+G LR+L+P R L+ F++G+G+ Sbjct: 172 YMPHKSFLALNELREKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGEWENSD 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L +++ LGF N ++ NT ++ Y N R+ L Y+IDG+V KVD Sbjct: 232 LTSHSEHLTRLKELGFKTNKEWKKCNTIDEVIEYVNYWTEHRNDLSYEIDGIVIKVDSLD 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A+SPRW I++KF ++A T L DI++ IGRTG++TP A L+PV + G + Sbjct: 292 QQEELGFTAKSPRWAIAYKFPAEEAMTTLRDIELSIGRTGVVTPTAILDPVRVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD+V++K+AG++IPKVV +V +R+ D Q F Sbjct: 352 ASLHNEDLIR-----------EQDIRIGDKVVIKKAGDIIPKVVRSVVEQRNGDEQEFHM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C + +VR L + A RC C AQ +E L HFVSR+A NI+GLG++ Sbjct: 401 PDECPACGNELVR-LEEEV-----ALRCINP-NCPAQLMEGLIHFVSRNAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ ++ AD++ L + + ++ G+ SVTNL ++I K + SL Sbjct: 454 IIQLFQEN----LVQTMADLYRLDKEELLQLERM------GEKSVTNLLEAIEKSKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIR +G++ A++LA + + +N + + ++ + +GD +A Sbjct: 504 ERLLFGLGIRFIGSKAAKTLAMEFETMENLQKAT----------YEDVLAIDEIGDKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +IV+++ + + + + L+E+ + + E+ S + K +V TG ++K R + Sbjct: 554 SIVQYFAEEK-VTELLSNLRELGVQMEYKGPRKSEQATDSVLSGKTVVLTGKMEKFSRKE 612 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 A+E + LG V+ +S+KTDI+I G++ GSKL+KA++LG+ + +E+Q Sbjct: 613 AKEIIESLGGTVTGSVSKKTDIVIAGEDAGSKLDKAEKLGIDVWSEQQL 661 >gi|238765534|ref|ZP_04626449.1| DNA ligase [Yersinia kristensenii ATCC 33638] gi|238696249|gb|EEP89051.1| DNA ligase [Yersinia kristensenii ATCC 33638] Length = 670 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 255/711 (35%), Positives = 412/711 (57%), Gaps = 49/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L ++ P Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITNDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ +++ E F R++ + K + F E K Sbjct: 60 --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKSAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++A +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 MPQAGFEQLNDEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + L + + G PV+N V+ ++++Y +++ R+ L +DIDG+V KVD Sbjct: 236 -PRSHIQRLMQFKHWGLPVSNRVKLCTGSEQVITFYRQVEQDRAGLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 DLQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R DA+ + Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEIT 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP+C S D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A ++EG+G + Sbjct: 404 FPEHCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVEGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + + + PAD+FTL + K+ + G S NL ++ K + + Sbjct: 458 IIEQLVEKQ----YVENPADLFTL------TAGKLTGLDRMGPKSAQNLIAALEKAKQTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA ++ + N D +L VP VG+I+A Sbjct: 508 FARFLYALGIREVGEATAANLAAHFRNLTNL----------RAADIEALKSVPDVGEIVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + ++ F N +EAL K +S + + + S K +V TG+L + R +A+ Sbjct: 558 KHVLNFLGEEHNQKVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 618 DRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668 >gi|91762853|ref|ZP_01264818.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1002] gi|91718655|gb|EAS85305.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1002] Length = 676 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 260/697 (37%), Positives = 406/697 (58%), Gaps = 49/697 (7%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 H+ YY +KPI+ D E+D LK+ + + L +SE P IG + + + K+ Sbjct: 20 HNKHYYDKNKPIVSDQEFDLLKKDIIDLESKYKFL-KSE--YSPTKSIGFKPSKNFQKIK 76 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 H +P LSL +N EDL+ F +I F KD N+I ++ EPKIDG ++ Y GK Sbjct: 77 HKVPMLSLGNAFNEEDLKNFEKKIINFLSLKDVNTIEYSAEPKIDGISASLIYINGKLTK 136 Query: 151 AALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 RGDG+ GED++ ++ I IP + N P+ I++RGEV+I NDF + D+ Sbjct: 137 GLSRGDGNEGEDITQNLKTIKDIPLEITKSNFPKEIDIRGEVFIENNDFKKIKDK----- 191 Query: 210 RKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 +ANPRNAASG LR+ N + L F + G ++ K Q L+ ++ GF Sbjct: 192 ---FANPRNAASGSLRQKNSLITEKIPLKFIAYTYGYEKKMNIKNQTSFLENLKLWGFKT 248 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 N ++ ++ + E++ R L +DIDG+VYKV++F LQK+LG A +PRW I+H Sbjct: 249 NPFNKKIIGVKNLMLNHKELEEKRKELAFDIDGIVYKVNDFDLQKRLGFAANAPRWAIAH 308 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 KF+ + + +++I+IQIGRTG LTPVA+++PVNIGG +++NATLHNED ++ Sbjct: 309 KFSANSSISEIMNIEIQIGRTGALTPVAKIKPVNIGGVIVSNATLHNED---------EI 359 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 +R +DIRVGD V V+RAG+VIP VV + + +R +++ F FP CP C S+ ++D N Sbjct: 360 VR--KDIRVGDTVTVERAGDVIPHVVSVDLKKRKQNSKKFIFPLKCPSCGSKTIKDYNET 417 Query: 449 TGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 T + A RC G C +ER+KHFVS+DAFNI+G GK+ ++ F+ + +R+P Sbjct: 418 TKRQDAVRRCASEGFECEKIAIERIKHFVSKDAFNIDGFGKKIVENFWNLK----LVRLP 473 Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 DIF L + KIE + G+G +SV NL SI K++NISLERFI+SLGIRH+G E A Sbjct: 474 QDIFKL------NYNKIEELEGWGKLSVANLRFSIEKKKNISLERFIYSLGIRHIGQENA 527 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + +A++ + NF + + NN + SL + +G Q+I +F+ N N+ Sbjct: 528 KLIARHLKTASNFFR----LSGENNIE--SLSNIDGIGITQIQSIKKFFLNKTNL----K 577 Query: 628 LLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 +L E+ ++ + N + ++NK + TG L I R +A+ + Q + + +++K Sbjct: 578 VLSELEKNLLIKDVILINNNGLLKNKTFMLTGKLNGISRAEAKSLIEQNSGKIISNVNKK 637 Query: 685 TDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 D +I GD P K+ A++ +KI+N+ ++L +L + Sbjct: 638 LDYLIAGDKPTLKKINTAKEWNIKIINQTEWLKMLNK 674 >gi|254785950|ref|YP_003073379.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901] gi|237685872|gb|ACR13136.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901] Length = 676 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 261/715 (36%), Positives = 402/715 (56%), Gaps = 55/715 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + + L Q +++H+ YY +P I D+EYD L + FP L E + P Sbjct: 9 EAVMRRCNELHQLLNHHNRQYYLLDEPEIPDAEYDRLFHELKTLEAEFPQL---ETADSP 65 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G E V H +P LSL+ ++ ED+R F RI + D + + EPK Sbjct: 66 TQRVGAEPLKGFSSVQHEVPMLSLDNAFSDEDMRAFEKRIQD--RLASDAELEYACEPKF 123 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193 DG +++ Y G+ A RGDG +GED++ +R I ++P LS N+P + EVRGEV + Sbjct: 124 DGIAVSLLYRDGRLQRGATRGDGATGEDITQNVRTIGSVPLKLSGDNVPAVFEVRGEVVM 183 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F LN G + + NPRNAA+G LR+L+P+ R L FF + +G Sbjct: 184 PRAGFAKLNAAAQERGDRLFVNPRNAAAGALRQLDPSITAKRPLVFFAYSVGYVEGELPP 243 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + L + LGF V A+ G ++YY ++ R+ L YDIDG+V+KV+++ LQ Sbjct: 244 THFGTLDLLEKLGFVVAGERALAHGAGGCLAYYRDLGEKRADLGYDIDGIVFKVNDYGLQ 303 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R+PRW I+HKF ++ T L D++ Q+GRTG +TPVARLEPV +GG ++NAT Sbjct: 304 NRLGFVSRAPRWAIAHKFPAQEEMTVLNDVEFQVGRTGAVTPVARLEPVFVGGVTVSNAT 363 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L +++GD+V+V+RAG+VIP++V ++++ R A+ FP+ Sbjct: 364 LHNRDEIERL-----------GVKIGDQVVVRRAGDVIPQIVSVVLSARPQHAKEIVFPA 412 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S+V G+ VA RCTGGL C+AQ+ E +KHFVSR A +IEGLG + ++ Sbjct: 413 NCPVCGSQV----EVLEGEAVA--RCTGGLVCAAQRKEAIKHFVSRTAMDIEGLGDKLVE 466 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 I ADI+ L+ + N+ GD S N+ D+I K ++ +L R Sbjct: 467 QLVG----LGHIEHIADIYRLEHE------VLANMERMGDKSAQNVIDAIEKSKSTTLPR 516 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+F+LGIR VG AR++A+++ +N + D +L+ V VG I+A I Sbjct: 517 FLFALGIREVGQATARNIAQHFGMLKNLM----------DADQEALVAVDDVGPIVAHHI 566 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSE---IENKKLVFTGTLQKIQRHKA 666 +F+Q N + ALL+E G H V++E ++ K V TGTL+ + R +A Sbjct: 567 FDFFQQQGNRAQI-ALLQEA----GVHWPESAPVAAESLPLDGKTYVLTGTLETLSRDEA 621 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 +E + LGA V+ +S+KTD ++ G GSKL KA+ LG+++++E F+ LL + Sbjct: 622 KEKLLALGAKVTGSVSKKTDCVVAGPGAGSKLAKAESLGIEVLDEAAFVALLDSF 676 >gi|254252054|ref|ZP_04945372.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158] gi|124894663|gb|EAY68543.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158] Length = 691 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 260/708 (36%), Positives = 394/708 (55%), Gaps = 52/708 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L + P+L P+ P ++GG + Sbjct: 20 LRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQLEADHPELVT---PDSPTQRVGGAVA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + +D+ F R+ K D + + + E K DG Sbjct: 77 SGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALAKTTDLAGSVTDPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++RYE G FV AA RGDG +GEDV+ +R I +IP ++ +P +++VRGEV + K Sbjct: 137 AISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGRTVPAVLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254 DF LN+ A G++ +ANPRNAA+G LR+L+P R L+FF +G+G + Sbjct: 197 DFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPMPDTH 256 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L LG PVN + G+++++ + R LPYDIDG+VYKV+ Q + Sbjct: 257 SALLDWYEALGLPVNRERAVVHGADGLLAFFRRVGEKRDALPYDIDGVVYKVNRRDEQDR 316 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLH Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 376 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F P+ C Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTEC 425 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLVCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + +R PAD+F L + + + F + S NL DS+ K ++ +L RFI Sbjct: 480 VELN----LVRTPADLFNL------GFSTLAELDRFAEKSAQNLLDSLEKAKHTTLARFI 529 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIRHVG A+ LAK++ S + I+ + D+ L+ V VG I+A++I + Sbjct: 530 YGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIDE---LLEVNDVGPIVAESIHQ 579 Query: 615 FYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N +E L K P K + K +V TGTL + R A+E + Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGTLPNLTRDAAKEMLE 639 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD +I G GSKL KA++LG+ +++E+ LL+ Sbjct: 640 AAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|87119444|ref|ZP_01075341.1| NAD-dependent DNA ligase [Marinomonas sp. MED121] gi|86164920|gb|EAQ66188.1| NAD-dependent DNA ligase [Marinomonas sp. MED121] Length = 676 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 267/715 (37%), Positives = 409/715 (57%), Gaps = 60/715 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++S L ++ + Y+ +P + D+EYD R A+ PDL +++ P ++G Sbjct: 8 QISELVNRLNDYSYAYHVKDEPKVSDAEYDLDYRTLIALEKQAPDLIQADSPT---QRVG 64 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + + V H++P LSL+ ++ E L +F R+++ + ++ + EPK+DG I Sbjct: 65 EKPDSGFQTVAHTVPMLSLDNAFSDEQLEEFEQRLFKLIGAQ---ALSYCCEPKLDGLAI 121 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198 ++RYE G V RGDG +GED+++ I+ I +IP ++ + P ++EVRGE+Y+ K F Sbjct: 122 SLRYEDGILVRGLTRGDGVAGEDITSNIKTIGSIPLKLRTQTPPPVLEVRGEIYMPKAGF 181 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYE 256 ALN + G K + NPRNAA+G LR+L+P+ +R L + +G T I Y+ Sbjct: 182 EALNKQAEEKGEKAFVNPRNAAAGSLRQLDPSITASRPLVLCAYSIGHTEGWIQPDSHYD 241 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L M GF N + + ++ G V YY + +R L YDIDG+VYKVD +LQ++LG Sbjct: 242 SLTLMSQWGFKTNPLMEKVSSIKGCVDYYQRLTELRPDLTYDIDGIVYKVDSLALQQELG 301 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR+PRW I+ KF ++A T++LD+D Q+GRTG +TPVARL+PV +GG ++NATLHN+ Sbjct: 302 FIARAPRWAIARKFPAEEAITQILDVDFQVGRTGAITPVARLDPVFVGGVTVSNATLHNK 361 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L +RV D V ++RAG+VIP+VV +I ++R D+ FP CPI Sbjct: 362 DEINRL-----------GVRVKDFVSIRRAGDVIPQVVKVIHDKRGEDSAEVIFPEVCPI 410 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG----KQQLD 492 CQS +L TG+ V RC+GGL C AQ+ E LKHFVSR A +I+GLG +Q +D Sbjct: 411 CQS----ELEQVTGEAVI--RCSGGLVCGAQRKEALKHFVSRKAMDIDGLGDKLVEQLVD 464 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F I+ P DI+ L +++Q + ++E + G+ SV L SI + R Sbjct: 465 LEF--------IKTPVDIYHLFKKKQ-ALLELERM---GEKSVEKLLTSIEASKQTEFHR 512 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI++LGIR VG AR+L +++ + ++ II N + SL++V VG I+AQ + Sbjct: 513 FIYALGIREVGEATARTLTRHF-------KTLDKIIEANTE---SLVKVDDVGPIVAQHL 562 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQ 667 F+ N V ALL + EK +S + L V TGTL ++R + + Sbjct: 563 RRFFFKDSNKEMVMALL---DAGLYWQEKEAASGETAQPLLGLTYVVTGTLTALKRDEVK 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA VS +S KT +I G+ GSKL KAQ LG++I++E L LL+++ Sbjct: 620 DKLISLGAKVSGSVSAKTHCLIAGEKAGSKLTKAQDLGIQILDEAGMLALLEEHG 674 >gi|27363688|ref|NP_759216.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus CMCP6] gi|81449211|sp|Q8DFK5|DNLJ_VIBVU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|27359804|gb|AAO08743.1| DNA ligase, NAD-dependent [Vibrio vulnificus CMCP6] Length = 669 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 253/709 (35%), Positives = 398/709 (56%), Gaps = 47/709 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E ++ L L+Q++ YH YY P I D+EYD + R AI P+ + P+ Sbjct: 3 ESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPS-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG S +VTH IP LSL+ ++ E+L F+ R ++ F EPK+ Sbjct: 61 -QRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDA--FCCEPKL 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG +++ YE G V AA RGDG +GE+++ +R I ++P ++ P IEVRGEV++ Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGEVFM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FA 251 K F LND G K + NPRNAA+G LR+L+ TR L F+ + +G I + Sbjct: 178 PKAGFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGISLS 237 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Y+ +++ G P+ + N + ++Y ++ + R LPY+IDG+V K+D+ + Sbjct: 238 SSHYQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDDIVI 297 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NA Sbjct: 298 QEKLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 357 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L + VGD V+++RAG+VIP++V ++ + R D + FP Sbjct: 358 TLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVKDRRKGDEKNIIFP 406 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S V R A RC+GGL C AQ+ E LKHFVSR A +++GLG + + Sbjct: 407 TACPVCHSHVERIEGE------AVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKVI 460 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + E + PAD+FTL T ++ G S N+ +++N + +L Sbjct: 461 EQLVDKE----MVETPADLFTLSAGVLTVLERM------GPKSAQNIVNALNVAKETTLA 510 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF++SLGIR VG A +LA+++ + + + LI VP +G+++A+ Sbjct: 511 RFLYSLGIREVGEATAANLARHFKTLEAIQTATHE----------QLIEVPDIGEVVARH 560 Query: 612 IVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F+ +N V+AL+++ V P++ + + K +V TGTL ++ R A+ Sbjct: 561 ITAFFAEEKNQRVVQALIEQGIVWPAVEELGSEIPQPLAGKVVVLTGTLTQLSRGDAKAA 620 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTDI+ G+ GSKL KAQ+LGV+I E+ L LL Sbjct: 621 LERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669 >gi|260892973|ref|YP_003239070.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4] gi|260865114|gb|ACX52220.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4] Length = 672 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 259/708 (36%), Positives = 388/708 (54%), Gaps = 45/708 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS E+A++ + L +EI+YHD YY P+I D+EYD L A+ AFP+ P Sbjct: 5 LSKEEAKRRIEELRREIAYHDYRYYVLDSPVISDAEYDRLVLELMALEEAFPEFI---TP 61 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG V H +P LSL + EDLR F R+ + + + +E Sbjct: 62 NSPTQRVGGAPREGFPTVRHLVPMLSLANAFEPEDLRDFDRRVR---EALPGEKVEYVVE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++ Y G+FV A RGDG GEDV+ +R I +IP + P +IEVRGE Sbjct: 119 PKIDGLAVSLLYRDGEFVQGATRGDGEVGEDVTPNLRTIRSIPLRFLKDAPPLIEVRGEA 178 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 ++ K F+ LN+ G P+ANPRNAA+G +R+L+P R L+FF +G+G I Sbjct: 179 FMPKEAFVKLNERREEAGEPPFANPRNAAAGSIRQLDPRVTAGRKLDFFAYGIGHYEGIS 238 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +E+L + GF VN R ++ ++ Y +S R LPY IDG+V KV+ Sbjct: 239 FSTHWEVLDWLAEQGFRVNEHRRLFSSIDEVIDYVLSWQSKRFDLPYVIDGMVVKVNSLE 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG +SPRW ++ KF ++A T+L I+I +GRTG+LTPVA +PV I G ++ Sbjct: 299 SQARLGATMKSPRWAVAFKFPPEEAVTKLRRIEISVGRTGVLTPVAVFDPVQIAGTTVSR 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED I+ +DIRVGD ++V +AG+VIP+VV + R + Q F Sbjct: 359 ATLHNEDLIR-----------EKDIRVGDYIVVHKAGDVIPEVVRSLPERRTGNEQIFRM 407 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C ++ +R+ G++ A RC ++C A+ E + HF SR+A +I GLGK Sbjct: 408 PDHCPACGAKTIRE----EGEV--AVRCP-NISCPARLKESIFHFASRNAMDIRGLGKVL 460 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ D ++ ADI+ L+R ++ G S NL I + ++ L Sbjct: 461 VEQLV---DRGL-VKNVADIYFLRREDLLRLERM------GPKSTANLLREIEESKSRGL 510 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R IF LGIRHVG A+ LA+++ S AQ L +P +G IA Sbjct: 511 NRLIFGLGIRHVGERAAKLLAEHFGSIDRLAQATEE----------ELTEIPEIGPKIAA 560 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ F+ PRN+ +E L + E ++ K VFTG L+ R +A+ + Sbjct: 561 SVRAFFAEPRNLEVIERLREAGVRLETTKEVREEGPLKGKVFVFTGALKSFTREEAKALI 620 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +LG V++ +SR+TD ++VG+NPGSK ++A++LG+K++NEE+F LL Sbjct: 621 ERLGGRVASSVSRRTDYVVVGENPGSKYDRARELGIKMLNEEEFKRLL 668 >gi|238752012|ref|ZP_04613496.1| DNA ligase [Yersinia rohdei ATCC 43380] gi|238709712|gb|EEQ01946.1| DNA ligase [Yersinia rohdei ATCC 43380] Length = 670 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 253/711 (35%), Positives = 415/711 (58%), Gaps = 49/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L+ + +H+ YY P I D+EYD + ++ + P+L ++ P Sbjct: 1 MESIIQQINQLKTSLRHHEHQYYVLDAPEIPDAEYDRMMQQLRELEAQHPELITNDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GG + +V H +P LSL+ +++ E F R++ + K + F E K Sbjct: 60 --QRVGGAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++ +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV++ V+ ++++Y +++ R+ L +DIDG+V KVD + Sbjct: 236 PRSHIQRLMQFKDWGLPVSDRVKLCTGSDQVIAFYRQVEQDRAELGFDIDGVVIKVDSLN 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R PDA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPPDAKEILF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PDHCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+FTL + K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFTL------TAGKLTGLDRMGPKSAQNLIVALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA ++ + N A +I+ +L VP VG+++A Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLANLRAADID-----------ALKSVPDVGEVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVS-PSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + ++ F N +EAL + ++ P R + + S K +V TG+L + R +A+ Sbjct: 558 KHVLNFLNEEHNQKVIEALEQVITWPEPQRIITEEIDSPFAGKTVVLTGSLTVLSRDEAK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+K+++E + + LL Sbjct: 618 DRLTALGAKVSGSVSKKTDLVIAGEAAGSKLIKAQELGIKVIDEAEMILLL 668 >gi|293603951|ref|ZP_06686365.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553] gi|292817644|gb|EFF76711.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553] Length = 700 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 266/726 (36%), Positives = 403/726 (55%), Gaps = 72/726 (9%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + L E+ H+ YY Y +P I D+EYD L R+ +A+ P+L P P ++G Sbjct: 15 AHLRAELEQHNVRYYVYDEPSISDAEYDGLMRQLEALEAEHPELI---TPESPTQRVGAA 71 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-----DNSIFFTLEPKIDG 136 + V+H++P LSL + E++ F R+ + + +F E K+DG Sbjct: 72 PVSAFGSVSHAVPMLSLNNAFAEEEVVAFDRRVTDTLRGAGLLGPAQQADYFC-ELKLDG 130 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++RYE G+ V AA RGDG +GEDV++ IR I IP L P+++EVRGEV +++ Sbjct: 131 LAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGAAPKVLEVRGEVLMNRA 190 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG----------- 244 DF LN+ K + NPRNAA+G LR+L+P R L FF +G G Sbjct: 191 DFEKLNEAQARRDEKIFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVQGLPGKQSG 250 Query: 245 ----------KTSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRS 293 + S++ K ML + LG PVN +A G++++Y ++ +R+ Sbjct: 251 LFDEATAGAGQASQLPEKSHGAMLAWLHELGLPVNLKHNDRATGAEGLMAFYAKVGELRA 310 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 +LPYDIDG+VYKVD QK LG AR+PR+ ++HKFA ++A+T LLDI++Q+GRTG +T Sbjct: 311 SLPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIEVQVGRTGAIT 370 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVARL+PV +GG +TNATLHNED I+ +D+R GD V+V+RAG+VIP+V Sbjct: 371 PVARLKPVFVGGVTVTNATLHNEDEIR-----------RKDVRKGDTVIVRRAGDVIPEV 419 Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 + ++ +R DAQ F P+ CP+C S + R L +T RCTGGL C+AQ+ + L Sbjct: 420 LGPVLEKRPDDAQQFVMPTACPVCGSAIER-LEDET-----IARCTGGLFCAAQRKQTLW 473 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 H SR A +IEGLG++ +D S ++ AD+++L+ + ++ G Sbjct: 474 HAASRKALDIEGLGEKLVDQLVDS----GRVKTLADLYSLRPLELVGLDRM------GQK 523 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 S NL +I+K R +L R +F+LGIRHVG AR +A+++ +I A + Sbjct: 524 SADNLVAAIDKARAPALNRLLFALGIRHVGETTARDVARHF----------GSIDAIMDA 573 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKL 652 D +L VP VG ++A +I F+ N +E L + V+P + + + K Sbjct: 574 DEEALSSVPDVGPVVAASIRRFFAEQHNRDVIEQLKAQGVNPVAEAAPQGTT--LAGKTF 631 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL R +A ++ G V+ +S+KT ++ G+ GSKL KAQ+LGV +++E+ Sbjct: 632 VLTGTLPNWTREEASMHIQAAGGKVTGSVSKKTAYLVAGEEAGSKLTKAQELGVTVLDED 691 Query: 713 QFLFLL 718 LL Sbjct: 692 ALKALL 697 >gi|307729327|ref|YP_003906551.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003] gi|307583862|gb|ADN57260.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003] Length = 688 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 264/706 (37%), Positives = 392/706 (55%), Gaps = 51/706 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ + YY +P + D+EYD L + ++I PDL P+ P ++GGE Sbjct: 21 LRTELERANYAYYVLDQPDLPDAEYDRLFKELESIEAEHPDLIV---PDSPTQRVGGEAA 77 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW---QKKDDNSIFFTLEPKIDGTMIT 140 V H P LSL + ED+ F R+ K+ + + E K DG I+ Sbjct: 78 SGFEPVVHDQPMLSLNNGFADEDIIAFDKRVGDALGNNAKEPPVPVDYATELKFDGLAIS 137 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 +RY G FV AA RGDG +GE+V+ IR + +IP R+ +P I++VRGEV + K DF Sbjct: 138 LRYVDGVFVQAATRGDGTTGENVTENIRTVRSIPLRLKGKRVPHILDVRGEVLMFKRDFE 197 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQY-E 256 LN+ A G K +ANPRNAA+G LR+L+ + IT R L+FF +G+G + + E Sbjct: 198 RLNERQRAAGHKEFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLDGMEMPATHSE 256 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L + LG PVN G+++++ + R LPYDIDG+VYKV+ Q+ LG Sbjct: 257 LLDWYKELGLPVNAERAVVKGAEGLLAFFRAVGEKRDKLPYDIDGVVYKVNRRDEQEALG 316 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLHNE Sbjct: 317 FVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNE 376 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA+ F P+ CP+ Sbjct: 377 DEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSALLDRRPADAREFVMPTHCPV 425 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S + R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D + Sbjct: 426 CGSNIERLPDE------AIARCTGGLICPAQRKQALWHFAQRRAMDIDGLGEKIIDQLVE 479 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +R PAD+F L + + F D S NL DS+ K ++ +L RFI++ Sbjct: 480 QN----LVRTPADLFNL------GFATLAELDRFADKSAQNLLDSLEKAKHTTLARFIYA 529 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG A+ LAK++ S + ND VG ++A++I +F+ Sbjct: 530 LGIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVND----------VGPVVAESIHQFF 579 Query: 617 QNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 N +E L K P K + K +V TGTL + R A+E + Sbjct: 580 AEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGTLPTLSREDAKEMLEAA 639 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 640 GAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKLLE 685 >gi|238799224|ref|ZP_04642672.1| DNA ligase [Yersinia mollaretii ATCC 43969] gi|238716921|gb|EEQ08789.1| DNA ligase [Yersinia mollaretii ATCC 43969] Length = 670 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 254/705 (36%), Positives = 414/705 (58%), Gaps = 47/705 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++++ L + +H+ Y+ P I D+EYD L ++ + P+L S+ P ++ Sbjct: 6 QQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITSDSPT---QRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +V H +P LSL+ +++ E F R++ ++ + + F E K+DG Sbjct: 63 GAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAE--PLTFCCELKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE+G+ V AA RGDG +GE+++A +R I IP R+ NIP +EVRGEV++ + Sbjct: 121 VSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVFMPQAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIFAKGQY 255 F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 181 FEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGELPRSHI 240 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + L + + G PV++ V+ ++++Y +++ R++L +DIDG+V KVD+ LQ+QL Sbjct: 241 QRLMQFKAWGLPVSHRVKLCTGSEQVIAFYRQVEQDRASLGFDIDGVVIKVDDLDLQEQL 300 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++NATLHN Sbjct: 301 GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN 360 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L +R+GD V+V+RAG+VIP+VV +++ +R DAQ FP CP Sbjct: 361 ADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAQEILFPEHCP 409 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A ++EG+G + ++ Sbjct: 410 VCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVEGMGDKIIEQLV 463 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + + + PAD+F L + K+ + G S NL +++K + + RF++ Sbjct: 464 EKQ----YVENPADLFEL------TAGKLTGLDRMGPKSAQNLIVALDKAKQTTFARFLY 513 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A +LA + ++N A N+ A + D +L VP VG+++A+ ++ F Sbjct: 514 ALGIREVGEATAANLAAH---FRNMA----NLRAADID---ALKSVPDVGEVVAKHVLNF 563 Query: 616 YQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 N +EAL K +S + + + S K +V TG+L + R +A++ +T L Sbjct: 564 LSEEHNQKVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKDRLTAL 623 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 GA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 624 GAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668 >gi|220935192|ref|YP_002514091.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7] gi|254781444|sp|B8GTL0|DNLJ_THISH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219996502|gb|ACL73104.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7] Length = 675 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 263/716 (36%), Positives = 402/716 (56%), Gaps = 56/716 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+ RK ++SL E+ YH+ YY P I D+ YDAL R + +P+L P+ P Sbjct: 6 EKVRKRVASLRDELDYHNHRYYVLDDPEIPDAAYDALMRELQDLEAKYPELV---TPDSP 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + + H +P LSL+ + D+ F RI + +++ I F +EPK+ Sbjct: 63 TQRVGGAPLKAFEEARHLLPMLSLDNAFEEADVLAFEKRIRD--RLGEESEIEFAVEPKL 120 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG I++ YE G V A RGDG +GEDV+A +R I IP R+ P+++EVRGEVY+ Sbjct: 121 DGLAISLLYEDGHLVRGATRGDGATGEDVTANVRTIRAIPLRLQGRGWPKLLEVRGEVYM 180 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEIF 250 + F A N E + G K + NPRNAA+G LR+L+ + IT R L FF +G G Sbjct: 181 DRAGFEAFNREAASRGEKVFVNPRNAAAGSLRQLD-SRITAKRPLTFFAYGAGHVEGGEL 239 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +L + G V G + YY + R LPYDIDG+VYKV+ F Sbjct: 240 PDTHAAVLDALAEWGQRVCPERDVVTGAAGCLEYYRRIGERRDGLPYDIDGVVYKVNRFE 299 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG +R+PRW I+HK+ ++ T L D++ Q+GRTG LTPVARLEPV +GG ++N Sbjct: 300 LQQRLGFVSRAPRWAIAHKYPAQEQMTLLRDVEFQVGRTGALTPVARLEPVFVGGVTVSN 359 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D ++ +D+R+GD V+V+RAG+VIP+V ++++ R +A+ Sbjct: 360 ATLHNMDEVE-----------RKDVRIGDTVIVRRAGDVIPEVAAVVLSRRPHNARHVVM 408 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S +VR G+ VA RC+GGL C+AQ+ E +KHF SR A +IEGLG + Sbjct: 409 PTHCPVCGSEIVR----SEGEAVA--RCSGGLYCAAQRREAIKHFASRRAMDIEGLGDKL 462 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ D + ++ L Q ++ G+ S NL D++ K ++ L Sbjct: 463 VEQLV---DAGLVDHVDG-LYRLTAEQLAGLERM------GEKSAHNLVDALEKSKHTQL 512 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG AR+LA ++ ++ ++A + + +L++VP VG ++A Sbjct: 513 ARFIFALGIREVGEATARALAIHFGG-------LDALMAADEE---ALMQVPDVGPVVAH 562 Query: 611 AIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 + F+Q P N ++AL +E P+ + E + V TG L+ + R Sbjct: 563 HVATFFQQPHNREVIDALREAGVHWEESEPAALQAE---DLPLSGNTYVLTGALESMTRE 619 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A + + LGA VS +S+KT +I G+ GSKL KA++LGV +++E +FL L+ + Sbjct: 620 EAGDRLMALGAKVSGSVSKKTTAVIAGEAAGSKLAKAEKLGVPVLSEAEFLELIGE 675 >gi|160872442|ref|ZP_02062574.1| DNA ligase, NAD-dependent [Rickettsiella grylli] gi|159121241|gb|EDP46579.1| DNA ligase, NAD-dependent [Rickettsiella grylli] Length = 674 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 255/696 (36%), Positives = 402/696 (57%), Gaps = 49/696 (7%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 H+ YY P+I D+ YD L R +AI +P+L P+ P ++G + V Sbjct: 22 HNYHYYILDAPLINDATYDTLFRELEAIEKRYPELI---TPDSPTQRVGSTPLTTFKHVQ 78 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 H++P LSLE ++ +++ F RI Q ++ +I + EPK+DG +++ Y KG+ + Sbjct: 79 HALPMLSLENAFSEKEVLAFNKRIQERLQTQE--AIEYACEPKLDGIAVSLTYHKGQLIR 136 Query: 151 AALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 AA RGDGH GED++ IR I +IP ++ + P +EVRGEVYI K F LN+ + G Sbjct: 137 AATRGDGHRGEDITLNIRTILSIPLKLQGQHYPNDLEVRGEVYIPKKKFQQLNEMLKKKG 196 Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTSEIFAKGQYEMLQKMRCLGF 266 K + NPRNAA+G LR+LNP R L FF H +G K ++ A +L + + G Sbjct: 197 EKMFVNPRNAAAGSLRQLNPKITAERPLAFFTHSIGIIKNGKL-ASTHTAILNQFQQWGL 255 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 P + A ++YY++++ R++LPY+IDG+VYKV+ +LQKQLG +R+PRW + Sbjct: 256 PRCPQTQLAKNITAALAYYHKIQKERASLPYEIDGVVYKVNALALQKQLGFISRAPRWAL 315 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++KF ++AST++L I+ Q+GRTG LTPVARL+PV +GGA ++NATLHN D +K Sbjct: 316 AYKFPAEEASTKILSIEFQVGRTGALTPVARLQPVFVGGATLSNATLHNMDEVK------ 369 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 +DIR GD V+++RAG+VIP+VV +I +R + +P + P CPIC S +++ Sbjct: 370 -----RKDIREGDTVIIRRAGDVIPEVVQVIKKKRPANTRPLTLPKQCPICCSAIIKV-- 422 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 + A RC+G L C Q+ E +KHF SR A NIEGLG + ++ D I+ Sbjct: 423 ----ETEAIARCSGALFCPLQRKEAIKHFASRQAMNIEGLGTK---IAYQLVDTGL-IQD 474 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 ++++ L +Q + + FG+ S L+ +I + +L RF++SLGIR VG Sbjct: 475 VSNLYHLTIKQ------LAALDHFGEKSAQKLHRAIQASKKTTLTRFLYSLGIRDVGIST 528 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 A +LA+++ Q + I+ + D L +P +G ++A I +F+ N+ ++ Sbjct: 529 ALNLAQHF-------QALKPIM---DADSALLQTIPDIGPVVATHIKKFFSEQHNLDVIK 578 Query: 627 ALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 LL P + +S K +V TG+L + R +A + + +LG VS+ +S+ Sbjct: 579 NLLAAGITWPKPEFIPPSQTSPFTGKNVVLTGSLSTLSREQATQLLQKLGTKVSSSVSKN 638 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 TD +I GDNPGSKL +A L + ++ E++FL LL++ Sbjct: 639 TDYVIAGDNPGSKLTRAHALKLTVLTEKKFLELLKE 674 >gi|225181787|ref|ZP_03735225.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1] gi|225167561|gb|EEG76374.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1] Length = 667 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 262/710 (36%), Positives = 403/710 (56%), Gaps = 55/710 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +QA + + L QEI H+ Y+ +P I D+E+D L ++ +A+ FPDL P+ P Sbjct: 4 QQALETVEKLRQEIDDHNYRYHVLDEPQISDAEFDDLMQKLEAMEAQFPDLV---TPDSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG+ ++TH +P LSL NIEDLR F+ R R + + + F +E K+ Sbjct: 61 TQRVGGKPLEGFEQITHRVPMLSLSNALNIEDLRDFVRRAIRLVPEAE---LEFVVELKV 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG ++++YE+G+FV A RGDG GED++ +R + +IP L L P +EVRGEVY+ Sbjct: 118 DGLAVSLQYEEGRFVRGATRGDGEVGEDITHNLRTVQSIP--LRLRKPLTLEVRGEVYMP 175 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 ++ FL LN+E A G+ +ANPRNAA+G LR+L+P R L+ +GLG +S++ Sbjct: 176 RSSFLKLNEERQAQGQPLFANPRNAAAGSLRQLDPKVAAERNLDMVSYGLGYSSDVTPSS 235 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ L ++ LG +N V +VSY + R LP+DIDGLV K+++ SLQ+ Sbjct: 236 HYDALMTLKELGMRINPHVVVLRELEDVVSYCESWREKRYELPFDIDGLVIKINDRSLQE 295 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF +QA TR+ I +Q+GR G LTP+A LEPV + G ++ A+L Sbjct: 296 ELGTTAKSPRWAIAYKFPAEQAVTRVKAITVQVGRIGTLTPLAELEPVTLAGTVVKRASL 355 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED ++ +D+RVGD V+V++AG++IP+VV+++ ++R +PF P Sbjct: 356 HNEDILR-----------EKDVRVGDHVIVQKAGDIIPEVVEVVKSKRTGAEEPFEMPKH 404 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK----Q 489 CP C S R G++ A RC + C AQ +ER+ HF SR A +IEG+G Q Sbjct: 405 CPACGSDATR----LPGEV--ALRCFNPV-CPAQVMERITHFASRSAMDIEGMGPAVVLQ 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 LD A I ADI++L +++ + ++ G+ SV NL +I K + Sbjct: 458 LLD--------AGLIADVADIYSLPDKKEA----LLSLERMGEKSVENLLAAIEKSKKQP 505 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R ++ LGIR VG AR L +++ S + ++A + ++ L V VG IA Sbjct: 506 LWRLLYGLGIRFVGDRTARLLVEHFNS-------MEKLMAASAEE---LEAVDEVGPKIA 555 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQE 668 Q++ EF+ P + +E L+ + E ++ K V TGTL R +A E Sbjct: 556 QSVTEFFSLPESGELIER-LRAAGLKLKEEEAEAKDLPLQGKTFVLTGTLPTYSRDEAAE 614 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G V+ +S+KTD ++ G+ GSKLEKA++L V I++EE LL Sbjct: 615 LIEDAGGRVTGSVSKKTDYVVAGEKAGSKLEKAEKLAVTILDEEGLQSLL 664 >gi|56418811|ref|YP_146129.1| NAD-dependent DNA ligase LigA [Geobacillus kaustophilus HTA426] gi|81348272|sp|Q5L3B9|DNLJ_GEOKA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56378653|dbj|BAD74561.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Geobacillus kaustophilus HTA426] Length = 670 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 263/708 (37%), Positives = 401/708 (56%), Gaps = 56/708 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +QA + + L + + + YY +P + D+EYD L + AI +P+L S+ P Sbjct: 4 QQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTSDSPT-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +IGG + KVTH +P +SL ++ DLR F R+ +++ + E KI Sbjct: 62 -QRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRV-----RQEVGEAAYVCELKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ +R I ++P L L P +E RGE ++ Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLP--LRLKEPVSLEARGEAFMP 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ FV+GL E+ + Sbjct: 174 KASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIES 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L ++ LGF VN R+ ++++ NE R LPY+IDG+V KVD F+ Q+ Sbjct: 234 HSEALDYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQR 293 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T L+ I++ +GRTG++TP A LEPV + G + ATL Sbjct: 294 ELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATL 353 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED+I+ +DIR+GD V++K+AG++IP+VV ++V+ R D PF+ P+ Sbjct: 354 HNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAMPTH 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C+S +VR G++ A RC C AQ ERL HF SR A NIEGLG++ + Sbjct: 403 CPECESELVR----LEGEV--ALRCLNP-NCPAQLRERLIHFASRAAMNIEGLGEKVVTQ 455 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F A +R AD++ L + Q ++ G+ S TNL +I + SLER Sbjct: 456 LFN----AGLVRDVADLYRLTKEQLIGLERM------GEKSATNLLAAIEASKQNSLERL 505 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR+VGA+ A+ LA+++ + + + L+ VP +G+ +A AI Sbjct: 506 LFGLGIRYVGAKAAQLLAEHFETMERLERATKE----------ELMAVPEIGEKMADAIT 555 Query: 614 EFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ P ++ L + P E S K +V TG L + R++A+ Sbjct: 556 AFFAQPEATELLQELRAYGVNMAYKGPKRS-AEAPADSAFAGKTVVLTGKLASMSRNEAK 614 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 E + +LG V+ +SR TD++I G++ GSKLEKAQQLG++I +E +FL Sbjct: 615 EEIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEIWDESRFL 662 >gi|331005395|ref|ZP_08328777.1| DNA ligase [gamma proteobacterium IMCC1989] gi|330420789|gb|EGG95073.1| DNA ligase [gamma proteobacterium IMCC1989] Length = 707 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 267/734 (36%), Positives = 414/734 (56%), Gaps = 77/734 (10%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 SI Q ++L+ L ++I ++ YY P I D+EYD L + P S+ P Sbjct: 30 SITQLDQQLNELREKIHHYSYQYYALDNPTIPDAEYDRLFLELQTLEKENPSYVTSDSPT 89 Query: 73 GPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFT 129 ++G + LS+F +VTH +P LSL+ ++ EDLR+F R+ D N I + Sbjct: 90 ---QRVGAQ-PLSVFSQVTHRLPMLSLDNAFSAEDLREFHRRVTERLASLDITVNEIEYA 145 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188 EPK+DG +++ Y+KG V A RGDG +GED++ +R I +IP R+ N P+ +EVR Sbjct: 146 CEPKLDGIAVSLVYQKGILVQGATRGDGKTGEDITQNVRTIASIPLRLQGDNYPDDLEVR 205 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246 GE+Y+ K F LN A K +ANPRNAA+G LR+L+ + IT R L + +G Sbjct: 206 GEIYLPKAGFEKLNKIADAREEKRFANPRNAAAGSLRQLD-SRITAQRPLEMCAYSVG-- 262 Query: 247 SEIFAKGQY-----EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + GQ ++L + GF +N + Y++++ R+ LPYDIDG Sbjct: 263 --VVDGGQVPTKHSDILYALSAWGFRINQEMASVKGIEACCDYFDQLSKKRNALPYDIDG 320 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V+KVD LQKQLG +R+PRW I+ KF ++ T LLD++ Q+GRTG +TPVARL+PV Sbjct: 321 IVFKVDSIELQKQLGFVSRAPRWAIAQKFPAQEELTELLDVEFQVGRTGAITPVARLKPV 380 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG ++NATLHN D ++ L +++GDRV+++RAG+VIP++V ++++R Sbjct: 381 FVGGVTVSNATLHNSDEVERL-----------GVKIGDRVIIRRAGDVIPQIVSAVIDQR 429 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 A+ FPS CP+C S VR G+ A RC+GGL C AQ + +KH+VSR A Sbjct: 430 PDHARDIIFPSSCPVCTSPTVR----VEGE--ATIRCSGGLVCPAQIKQAIKHYVSRKAM 483 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +++GLG + ++ + I AD++ LQ Q + N+ G+ S +N+ + Sbjct: 484 DVDGLGDKLVEQLVE----LGHITSVADLYDLQVEQ------LANMERMGEKSASNVIHA 533 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + + +N + RFI++LG+R VG AR+LA+Y+ +I+ ++ +D L RV Sbjct: 534 LEQSKNTTFARFIYALGVREVGEATARNLAQYF-------GDISRLLTATEED---LQRV 583 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---------- 651 VG ++AQ IV F +N KEV + EK V E+ ++ Sbjct: 584 NDVGPVVAQFIVAFLSQQKN--------KEVIAKL--QEKGVHWEVIEQQDNPQPLLDTV 633 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 V TGTL+++ R +A+ ++ QLGA V+ +S+KT ++ G+N GSKL KA+ LGV I+ E Sbjct: 634 YVLTGTLEQLTRDEAKAHLQQLGATVTGSVSKKTHFLVAGENAGSKLTKAESLGVNILGE 693 Query: 712 EQFLFLLQQYNTTL 725 + + LL +Y TL Sbjct: 694 QDLINLLNEYGITL 707 >gi|294140434|ref|YP_003556412.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12] gi|293326903|dbj|BAJ01634.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12] Length = 683 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 258/716 (36%), Positives = 404/716 (56%), Gaps = 54/716 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 + +I+ +E++ L ++ H+ CYY P I D+EYD L ++ + A P+ Sbjct: 11 SFNIQAVAQEIAELTDILNGHNYCYYVDDAPSIPDAEYDRLLKQLKVLETAHPEYCF--- 67 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P ++GG +V H P LSL+ +++ E+ F RI K D + F Sbjct: 68 PDSPTQRVGGVALAKFDQVVHLKPMLSLDNVFSDEEFEAFYNRI----NDKTDTAPTFCC 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRG 189 EPK+DG ++I Y G + A RGDG +GED++ +R I +IP L N P ++EVRG Sbjct: 124 EPKLDGLAVSILYRDGIYERAGTRGDGKTGEDITENVRTILSIPMKLRGENFPPLLEVRG 183 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---- 244 EV + K F +LN+ A G K + NPRNAA+G LR+L+ +R L F+ + LG Sbjct: 184 EVIMPKQAFDSLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEP 243 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 +T E+ A Y+ L +++ GFPV+ V+Q ++ +++YY ++ + RS+L Y+IDG+V Sbjct: 244 ETWEL-ADHHYDQLMQLKSWGFPVSAEVKQCDSVKDVIAYYTDIMTRRSSLAYEIDGVVI 302 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD Q LG A++PRW + KF ++ T L +D Q+GRTG +TPVARL+P+ +G Sbjct: 303 KVDNIDQQAMLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPIFVG 362 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D I L +++ D V+V+RAG+VIP++V I+ ++R D Sbjct: 363 GVTVSNATLHNADEIARL-----------GVKIKDTVIVRRAGDVIPQIVAIVADKRPDD 411 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A FP+ CP+C S V R G+ VA RCTGGL C AQ+ E +KHF SR A +I+ Sbjct: 412 ASEIEFPTTCPVCDSLVER----LEGEAVA--RCTGGLFCEAQRKEAIKHFASRKALDID 465 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + ++ E + PAD+F L T ++ G S TNL +I Sbjct: 466 GMGDKVVEQLIDKE----LVESPADLFKLSASAMTMLDRM------GLKSATNLVKAIEV 515 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + + RF+++LGIR VG A +LA Y+ S ++ + A N +++ I+V V Sbjct: 516 AKQTTFSRFLYALGIREVGEATAANLASYFKS-------LDKLKAANAEEF---IKVDDV 565 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 G I+AQ + F+ N+ V++L++ P+I + S ++ + V TGTL ++ Sbjct: 566 GIIVAQHLTHFFAQEHNLAVVDSLIQAGVNWPAIEEVAEE-SLSLKGQTWVLTGTLTQLN 624 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R+ A+ + LGA V+ +S+ T ++ G+ GSKL KAQ LG+KI++EE L +L Sbjct: 625 RNDAKAQLQALGAKVAGSVSKNTSCLVAGEAAGSKLTKAQDLGIKILDEEGLLAVL 680 >gi|293395040|ref|ZP_06639327.1| DNA ligase [Serratia odorifera DSM 4582] gi|291422447|gb|EFE95689.1| DNA ligase [Serratia odorifera DSM 4582] Length = 673 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 257/719 (35%), Positives = 409/719 (56%), Gaps = 58/719 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E K+++ L + +H+ Y+ P I D+EYD L R + A P+L ++ P Sbjct: 1 MEPNNKKINQLRTSLRHHEYLYHVLDAPEIPDAEYDRLMRELRTLEEAHPELITADSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ +++ + F R+ + K + F E K Sbjct: 60 --QRVGAAPLTAFDQVRHEVPMLSLDNVFDEDSYLAFYKRVQD--RLKSSEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP R++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLIGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +NDE K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 MPQAGFEKMNDEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + Y+ L + + G PV++ VR ++++Y +++ RS L +DIDG+V K+D+ Sbjct: 236 -PRSHYQRLMQFKAWGLPVSDRVRLCTGSDQVLAFYRQVEQDRSQLGFDIDGVVVKIDDI 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG AR+PRW + KF ++ T + +++ Q+GRTG +TPVARLEPV + G ++ Sbjct: 295 DLQERLGFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD V+V+RAG+VIP+VV ++ + R PDA+ Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVEDRRPPDAREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPQHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKEALKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + E ++ PA +F L T ++ G S NL ++ K + + Sbjct: 458 IIEQLVEKE----YVKNPAGLFRLTAGMLTGLDRM------GPKSAQNLASALEKAKQTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA ++ S D +L +VP VG+++A Sbjct: 508 FARFLYALGIREVGESTAANLAAHFGSLDKL----------RAADVEALKQVPDVGEVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE--------KNVSSEIENKKLVFTGTLQKI 661 + +V F+ N ++ L VS IG H + + S K +V TG+L ++ Sbjct: 558 KHVVNFFAEALNQQVIDEL---VSDDIGIHWPAPVVVAVEEIDSPFAGKTVVLTGSLSQL 614 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Q Sbjct: 615 SRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEAEMIRLLGQ 673 >gi|167586849|ref|ZP_02379237.1| DNA ligase, NAD-dependent [Burkholderia ubonensis Bu] Length = 691 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 267/714 (37%), Positives = 399/714 (55%), Gaps = 60/714 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L I P+L P+ P ++GG + Sbjct: 20 LRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQIEADHPELVT---PDSPTQRVGGAVA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + ED+ F RI K D + + + E K DG Sbjct: 77 GGFTPVVHDAPMLSLNNGFEDEDIVAFDKRIADALDKAVDLAGSVTDPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++RYE G FV A+ RGDG +GEDV+ +R I ++P ++ N+P +++VRGEV + K Sbjct: 137 AISLRYENGVFVQASTRGDGTTGEDVTQNVRTIRSLPLKLKGRNLPAVLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIFAKGQ 254 DF LN+ A G++ +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 197 DFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGAPMPDTH 256 Query: 255 YEMLQKMRCLGFPVNNG---VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +L LG PVN VR AN G++ ++ ++ R +LPYDIDG+VYKV+ Sbjct: 257 SALLDWYETLGLPVNRERAVVRGAN---GLLGFFRKIGEQRESLPYDIDGVVYKVNRRDE 313 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PR+ ++HKF ++A T L+ ID+Q+GRTG +TPVARLEPV +GGA +TNA Sbjct: 314 QERLGFVSRAPRFALAHKFPAQEALTTLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 373 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP-FSF 430 TLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R PD P F Sbjct: 374 TLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGAVLD-RRPDPAPEFVM 421 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C SR+ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ Sbjct: 422 PTECPVCGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKI 475 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + +R PAD+F L + + F + S NL DS+ K ++ +L Sbjct: 476 IDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTL 525 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI+ LGIRHVG A+ LAK++ S +N I+ ++ L+ V VG I+A+ Sbjct: 526 ARFIYGLGIRHVGESTAKDLAKHFGS-------LNPIMDATVEE---LLEVNDVGPIVAE 575 Query: 611 AIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +I +F+ N +E L K P K + K +V TGTL + R A+ Sbjct: 576 SIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ + Sbjct: 636 EMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLEGH 689 >gi|77165170|ref|YP_343695.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707] gi|254433594|ref|ZP_05047102.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27] gi|123730661|sp|Q3JAI1|DNLJ_NITOC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76883484|gb|ABA58165.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707] gi|207089927|gb|EDZ67198.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27] Length = 675 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 256/704 (36%), Positives = 397/704 (56%), Gaps = 51/704 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A++ + +L++ I+ +D YY + P++ DSEYD L R A+ +P+L + P Sbjct: 7 AKERIQALKELINNYDYAYYVVNNPLVPDSEYDRLIRELQALEENYPELITLDSPT---Q 63 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFTLEPKID 135 ++G + SL ++ H IP LSL ++ +L F R+ R ++ D + EPK+D Sbjct: 64 RVGAKPVKSLGEIKHEIPMLSLNNAFHEGELADFHRRVKTRLGIERVD----YAAEPKLD 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G +++ Y+ G V A RGDG +GED++ IR IPT+ R+ IP ++EVRGEVY+ Sbjct: 120 GLAVSLLYQDGVLVQGATRGDGITGEDITHNIRTIPTVSLRLRGEKIPSLLEVRGEVYMP 179 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFAK 252 + F N E IA G KP+ NPRNAA+G LR+L+P R L F +G+G+ I Sbjct: 180 RQGFEQFNREQIAKGEKPFVNPRNAAAGSLRQLDPRITANRPLALFCYGVGQVEGGILPD 239 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E+L +++ G + G YY + +R LPY+IDG+V+KVD Q Sbjct: 240 RHSEILFQLKQWGLRILPYSEVVEELAGCEKYYQHLLDLRDKLPYEIDGVVFKVDYLDQQ 299 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG AR+PRW +++KF ++ T++LDI++Q+GRTG LTPVARL+PV +GG ++ AT Sbjct: 300 QILGSLARAPRWALAYKFPAQEELTQILDIEVQVGRTGALTPVARLQPVFVGGVTVSKAT 359 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNE G++ R +DIR+GD V V+RAG+VIP++V +I+ R PD++PF P Sbjct: 360 LHNE---------GEIQR--KDIRIGDTVYVRRAGDVIPEIVKVIMERRLPDSRPFQMPR 408 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S +V++ G VA RC+GGL C AQ+ E +KHF R A +I GLG + ++ Sbjct: 409 QCPVCGSEIVKE----EGGAVA--RCSGGLYCPAQRKEAIKHFAGRRAMDINGLGDKLVE 462 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 K ++ AD++ L + Q ++ G S TNL ++I + ++ +L R Sbjct: 463 QLTKQG----LLKDVADLYGLTKEQLAGLERM------GQKSATNLINAIQQSKHTTLPR 512 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG A+ LAK + S + A + D +G I+A I Sbjct: 513 FLYALGIREVGEATAQVLAKEFGSLEALASVSEERLQQVTD----------IGPIVAAHI 562 Query: 613 VEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F++ P N ++ L K P + + + + + V TGTL+ + R +A+E + Sbjct: 563 AAFFRQPHNRQIIQGLQKAGVCWPEV-EDKVQIVQPLLGRTFVLTGTLESMTREQAKERL 621 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LG V+ +S TD +I+G NPGSKL KA+ LG+ I++E F Sbjct: 622 QALGGKVNGSVSPHTDYLIIGANPGSKLVKARNLGITILDETYF 665 >gi|121604718|ref|YP_982047.1| DNA ligase [Polaromonas naphthalenivorans CJ2] gi|166216226|sp|A1VN98|DNLJ_POLNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120593687|gb|ABM37126.1| DNA ligase, NAD-dependent [Polaromonas naphthalenivorans CJ2] Length = 707 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 262/714 (36%), Positives = 401/714 (56%), Gaps = 56/714 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 +++L E+ H YY +P I D+EYD L + A+ A P+L P+ P ++GG Sbjct: 24 IAALRAELDLHAHRYYVLDEPSIPDAEYDRLFKELQALEAAHPELL---TPDSPTQRVGG 80 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGT 137 + V H IP LS+ + E R F TR+ + K+ D + + E K DG Sbjct: 81 KPLGQFASVRHRIPMLSIRTETDTEATGARNFDTRVRKELGLKESDPPVEYVAELKFDGL 140 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++RYE G V AA RGDG GEDV+ IR I IP L + P ++EVRGEVY+ +++ Sbjct: 141 AMSLRYENGVLVQAATRGDGEVGEDVTQNIRTIRQIPLRLPADAPPVMEVRGEVYMRRDE 200 Query: 198 FLALND---EMIAVG---RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 F ALN+ E IA G K + NPRNAA+G +R+L+P R L+FF +G+G+ + Sbjct: 201 FEALNERQREKIAKGAKGEKTFVNPRNAAAGGVRQLDPAFAAERRLSFFAYGVGEITPPE 260 Query: 251 AKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 G +E+LQ ++ FPV R A +++++ + R LPYDIDG+VYK Sbjct: 261 EGGPVFETHFELLQTLKSWCFPVAAQTRLAYGAPELIAFHEAIGRQRDQLPYDIDGVVYK 320 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ +LQ+++G +R PRW ++HK+ ++ T +L IDIQ+GRTG LTPVA+L PV +GG Sbjct: 321 VNSLALQRKMGFVSREPRWAVAHKYPAQEQLTTVLAIDIQVGRTGKLTPVAKLAPVFVGG 380 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +TNATLHNED + +D+RVGD V+V+RAG+VIP+VV +++++R DA Sbjct: 381 VTVTNATLHNEDEAR-----------RKDVRVGDTVIVRRAGDVIPEVVSVLLDKRVQDA 429 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 FS P CP+C S VR+ A +RCTGGL C+AQ+ E + H+ + A IEG Sbjct: 430 PQFSMPRQCPVCGSDAVREEGE------ADYRCTGGLFCAAQRKEAILHYAHKRAVEIEG 483 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + ++ + IR D++ L T + ++ + S +NL ++ K Sbjct: 484 LGDKLVEQLVDTG----VIRTLPDLYRL------GFTSLASLDRMAEKSASNLVAALEKS 533 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + +L RF+F LGIRHVG A++LA+++ ++++I+ + + L+ V VG Sbjct: 534 KQTTLPRFVFGLGIRHVGEATAKALARHF-------GQLDSIMDASEE---QLLEVADVG 583 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 I+A++I F++ P N VE L V+ G + K V TGTL + R Sbjct: 584 PIVAKSIRTFFEQPHNREVVEQLRACGVTWEEGAPAAVAPKPLSGKTFVITGTLPGLSRD 643 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A++ + G V+ +S+KTD ++ G + GSKL KA+ LGV +++E L LL Sbjct: 644 DAKDRIEAAGGKVAGSVSKKTDYVVAGLDAGSKLVKAEALGVAVIDEATLLALL 697 >gi|115314545|ref|YP_763268.1| DNA ligase [Francisella tularensis subsp. holarctica OSU18] gi|122325430|sp|Q0BMQ3|DNLJ_FRATO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115129444|gb|ABI82631.1| DNA ligase (NAD(+)) [Francisella tularensis subsp. holarctica OSU18] Length = 678 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 269/728 (36%), Positives = 410/728 (56%), Gaps = 65/728 (8%) Query: 6 LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 + P E SI+ A+ EL + L +S Y+ KPII DS+YD L R + Sbjct: 1 MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 + P + N L+++GGE+ + H SL ++++E+LR F +I Sbjct: 61 VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + I EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P L+ Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169 Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236 N PE +EVRGE+ + K FL+LN+ M K +ANPRNAA+G +R L+ + R L Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229 Query: 237 NFFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + +G+G S+ ++ + Q+E++Q ++ GF +++ + A F + Y+++M R+ Sbjct: 230 KLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDGLV+KV+ LQ +G AR P+W I++KF ++ + +L+++ Q+GRTG +TP Sbjct: 290 LAYDIDGLVFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITP 349 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------SKDIRVGDRVIVRRAGDVIPEVV 398 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + R DAQ P+ CP+C S+ + ++N + A +RCTGG C AQ ERLKH Sbjct: 399 KSLPQYRKSDAQIVEMPTNCPVCDSK-IENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSR A +I+ LG + ++ A I+ PADI+ L Q T ++ S Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFEQLTGLERM------AAKS 502 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 N+ DSI K + SL RFIF++GI+ +G + +LA ++ S ++F + Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDALANHFGSLESF----------RDAK 552 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650 + LI + VG+IIA IV F+ + NI VE L K +P H N S K Sbjct: 553 FEELIEINYVGEIIANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNES--FTGK 610 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+ + R + + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670 Query: 711 EEQFLFLL 718 E+ LL Sbjct: 671 EDNLKDLL 678 >gi|326572929|gb|EGE22914.1| NAD-dependent DNA ligase [Moraxella catarrhalis CO72] Length = 691 Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust. Identities = 273/712 (38%), Positives = 402/712 (56%), Gaps = 47/712 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ +I +E+RGEV Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + K F LN E IA G K +ANPRNAA+G LR+LN R L FF + + Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q +Q + LGF + + + A + I ++Y + RS LP++IDGLV KV++ SL Sbjct: 254 TTQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLSL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN G++ R G + VGD V V RAG+VIPKV +I R DA+P P Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+CQS + + G+ +A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 FF+ ++ ADI+ L ++ + T + G GD SVT + +I K + +L Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFIF+LGIR VG A SLA+ + E+ +II D +L VP +G+I AQ+ Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577 Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I +F++ NI V+AL++ VS S + + V TGTL + R +A++ + Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|90408119|ref|ZP_01216289.1| DNA ligase [Psychromonas sp. CNPT3] gi|90310805|gb|EAS38920.1| DNA ligase [Psychromonas sp. CNPT3] Length = 667 Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust. Identities = 262/714 (36%), Positives = 397/714 (55%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I K+L+ +E +Y YY +P I D++YDA+ ++ AI P L Sbjct: 1 MAIALQVKKLTEQLEEYNYQ---YYVLDEPSISDAQYDAVFQQLKAIESEHPHLLHE--- 54 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P K+GG+ +V H +P LSL+ ++N E L+ FI R K + F +E Sbjct: 55 NSPTQKVGGQALSKFEQVAHEMPMLSLDNMFNDEALQAFIQRA----SDKSIKEVAFCIE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I YE G V AA RGDGH+GE+V+A ++ I IP R+ NIP+ +EVRGE Sbjct: 111 PKLDGLAVSIIYEHGLLVQAATRGDGHTGENVTANVKTISNIPLRLRGDNIPQRLEVRGE 170 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V++ + F LN + A+G K + NPRNAA+G LR+L+ +R L F+ + +G Sbjct: 171 VFMPQLGFDKLNARLEALGEKSFVNPRNAAAGSLRQLDSKIAASRPLAFYCYAVGVFDGD 230 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 QY +Q+++ G PV++ + + ++YY + + R +L Y IDG+VYKVD+ Sbjct: 231 LENSQYARMQQLKGWGLPVSSEISRVQGLDACLAYYRNIVTQRESLGYAIDGVVYKVDDI 290 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ +LG AR+PRW ++KFA ++A TR+ +++ Q+GRTG +TPVA+L PV +GG ++ Sbjct: 291 DLQDKLGFVARAPRWASAYKFAAEEAITRVENVEFQVGRTGAITPVAKLRPVFVGGVTVS 350 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPF 428 NATLHN+D I L I +GD V+V+RAG+VIP+V +++ R Q Sbjct: 351 NATLHNQDEIARL-----------GILIGDDVVVRRAGDVIPQVARVLLENRDLSQTQEI 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FPS CP+C S + R + T RCTGGL C+AQ+ E +KHF SR A +I+GLG Sbjct: 400 HFPSVCPVCSSALERIVGEAT------IRCTGGLYCAAQRKEAIKHFASRKALDIDGLGN 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + I+ PA +F L + +I + G VS + +S+ + Sbjct: 454 KLVALLVDHD----LIKDPAQLFDL------TLAQISTLPRMGSVSAKKVLNSLQVSKKT 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF+++LGIR VG A +LA +Y N+ A + +L V VGDI+ Sbjct: 504 TLSRFLYALGIREVGEATANNLAMHY----------KNLSALQDAGIEALKEVADVGDIV 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ I F++ P N+ V LL+ P I E + + + V TG+ I R Sbjct: 554 AKNIYYFFRQPSNLQVVNRLLEAGVHWPDIQAVESTTQTLV-GQTFVITGSFANISRSDI 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA VS +S+KT+ +I G GSKLEKAQ L + IM+E+Q LL + Sbjct: 613 KSELQALGAKVSGSVSKKTNTLIAGTAAGSKLEKAQALDINIMDEQQLFTLLNK 666 >gi|304398312|ref|ZP_07380186.1| DNA ligase, NAD-dependent [Pantoea sp. aB] gi|304354178|gb|EFM18551.1| DNA ligase, NAD-dependent [Pantoea sp. aB] Length = 672 Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust. Identities = 252/710 (35%), Positives = 401/710 (56%), Gaps = 59/710 (8%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L + +H+ Y+ P + D+EYD L R + PDL P+ P ++G Sbjct: 8 ITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLI---TPDSPTQRVGA 64 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 +V H +P LSL+ ++ F R+ + +D I + E K+DG ++ Sbjct: 65 APLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKNSED--ITYCCELKLDGAAVS 122 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 + YE G V AA RGDG +GE+++A +R I IP R+ NIP +EVRGEV++++ F Sbjct: 123 LMYENGLLVQAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEVFMTQRGFE 182 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQYE 256 LN+E K +ANPRNAA+G LR+L+P R L FF +G G + E+ Sbjct: 183 KLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM-PHSHMA 241 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ+ + G PV++ +++ + +++Y E++ R L +DIDG+V KVD +LQ+QLG Sbjct: 242 RLQQFKAWGLPVSDRIKRVHNAEEALAFYREIEQQRPNLGFDIDGVVIKVDSQALQEQLG 301 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR+PRW I+ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++NATLHN Sbjct: 302 FVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNA 361 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L +R+GDRV+++RAG+VIP+VV++++ ER + + FP+ CP+ Sbjct: 362 DEIERL-----------GLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVFPAHCPV 410 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V R G+ V RCTGGL C AQ+ E LKHFVSR A +++G+G + +D + Sbjct: 411 CGSEVER----VEGESVT--RCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVE 464 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E + PAD+F L + K+ + G S N+ D++ K ++ +L RF+++ Sbjct: 465 KE----YVSTPADLFRL------TAGKLTGLDRMGPKSAQNVVDALEKAKSTTLARFLYA 514 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A +LA ++ Q + D +LI VP VG ++A + F Sbjct: 515 LGIREVGEATAANLANHFGELQKVM----------DADLEALIAVPDVGKVVATHVRNFM 564 Query: 617 QNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + N ++++++ IG H + + S K +V TG+L ++ R A+ Sbjct: 565 EEESN----REVIRQLTEEIGIHWPQVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDDAKA 620 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 621 QLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670 >gi|209695779|ref|YP_002263709.1| NAD-dependent DNA ligase LigA [Aliivibrio salmonicida LFI1238] gi|254781250|sp|B6EJQ6|DNLJ_ALISL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|208009732|emb|CAQ80037.1| NAD-dependent DNA ligase [Aliivibrio salmonicida LFI1238] Length = 669 Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust. Identities = 262/712 (36%), Positives = 409/712 (57%), Gaps = 50/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +SIE K L L+++++YH YY P + D+EYD + ++ I P+ + P Sbjct: 1 MSIE---KTLDELKKQLNYHAYRYYVEDSPELPDAEYDRMMQQLLLIEKEHPEFMTVDSP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GGE +V H IP LSL+ +N +L F RI + D+ F E Sbjct: 58 S---QRVGGEALGGFTQVQHEIPMLSLDNAFNDNELDSFEKRIND--RLISDSVSLFCCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 PK+DG +++ Y G V A RGDG +GE+++ +R I IP L P +EVRGE Sbjct: 113 PKLDGLAVSLLYVDGLLVQAGTRGDGATGENITENVRTIRCIPLTLQGEGWPTRLEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V++ K F ALN+ + KP+ANPRNAA+G LR+L+ TR L+F+ + +G Sbjct: 173 VFMPKAGFDALNERALKRAEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGIIEGG 232 Query: 250 FAKG-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +G Y+ +++ G P+ +Q ++ + +YY ++ R L Y+IDG+V KVD Sbjct: 233 ELEGSHYQRFVQLKNWGLPMCEETKQCHSLTDVKAYYKDILERRDALKYEIDGVVIKVDS 292 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQ+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEP+ +GG + Sbjct: 293 ISLQEQLGFVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPIFVGGVTV 352 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L + +GD V+++RAG+VIP++V ++ R D++ Sbjct: 353 SNATLHNADEIARL-----------GVHIGDTVIIRRAGDVIPQIVSVVEARRPEDSKAI 401 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +P+ CP C S++ R G++V RC GL C AQ+ E LKHFVSR A +++GLG Sbjct: 402 IYPTTCPACDSQLER----IEGEVVT--RCVAGLVCPAQRKEALKHFVSRKALDVDGLGD 455 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L T ++ G S N+ +++NK + Sbjct: 456 KVVEQLVDKE----MVETPADLFKLSAGVLTVLDRM------GPKSAQNVVNALNKAKET 505 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA ++ Q +N I ++ + LI V VGDI+ Sbjct: 506 TLSRFLYSLGIREVGEATAANLALHF-------QTLNAI---SSATFEQLIEVSDVGDIV 555 Query: 609 AQAIVEFYQNPRNICAVEAL-LKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A+ I+ F+ P N +E L L V+ P I +++V + +K +V TGTL K++R++A Sbjct: 556 AKHILGFFSEPHNQAVIENLQLMGVNWPDIKALDESVPQPLADKVVVLTGTLYKLKRNEA 615 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +LGA V+ +S+ TDI+ G+ GSKL KA++LGV+IMNEEQ + +L Sbjct: 616 KAALQELGAKVAGSVSKNTDILFAGEAAGSKLAKAEELGVEIMNEEQLIEIL 667 >gi|261340751|ref|ZP_05968609.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316] gi|288317173|gb|EFC56111.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316] Length = 671 Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust. Identities = 256/719 (35%), Positives = 408/719 (56%), Gaps = 61/719 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 SIEQ +L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 3 SIEQ---QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELI---TPD 56 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G E + +V H +P LSL+ +++ E F R+ + K +++ + E Sbjct: 57 SPTQRVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSSDALTWCCEL 114 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG ++I YE G V AA RGDG +GED++ +R I IP ++ NIP +EVRGEV Sbjct: 115 KLDGLAVSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 ++ + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 175 FLPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----IL 230 Query: 251 AKGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 G+ L + + G PV+N V+ ++ ++++Y++++ R TL +DIDG+V K Sbjct: 231 EGGELPDTHLGRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIK 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 291 VNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 L++NATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER D Sbjct: 351 VLVSNATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPDDT 399 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + FPS CP+C S V R G+ V RCTGGL C AQ+ E LKHFVSR A +++G Sbjct: 400 RAIEFPSHCPVCGSDVER----VEGEAVT--RCTGGLICGAQRKESLKHFVSRRAMDVDG 453 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + +D + E + PAD+F L + K+ + G S N+ +++ Sbjct: 454 MGDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLDRMGPKSAQNVVNALETA 503 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + + RF+++LGIR VG A LA Y+ + + + + L +VP VG Sbjct: 504 KKTTFARFLYALGIREVGEATAAGLAAYFGTLEALEKASID----------ELQKVPDVG 553 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 ++A + F+ N + LL E +P + E+ + S K +V TG+L ++ Sbjct: 554 IVVATHVFNFFAEESNREVIGKLLAEGISWPAPVVVNAEE-IDSPFAGKTVVLTGSLSQL 612 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL + Sbjct: 613 SRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 671 >gi|293391716|ref|ZP_06636050.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952250|gb|EFE02369.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans D7S-1] Length = 671 Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust. Identities = 257/708 (36%), Positives = 410/708 (57%), Gaps = 57/708 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L + + +H+ Y+ P I DSEYD L + A+ P+L ++ P + Sbjct: 6 QQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTADSPT---QR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ H IP LSL+ ++ E+ F+ RI + + F EPK+DG Sbjct: 63 VGARPLSEFAQIRHEIPMLSLDNAFSNEEFFAFVKRIQDRLALVPE-PLTFCCEPKLDGL 121 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 ++I Y G AA RGDG +GED++ IR I IP ++L+ N P +EVRGEV++ Sbjct: 122 AVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPHA 181 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTSEIFAKG 253 F LN+ + G K +ANPRNAA+G LR+L+P ++ LN + G+ + E+ Sbjct: 182 GFERLNERALQHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVEL-PPT 240 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E LQ ++ +G PVNN ++ + ++++Y + + RS+L YDIDG V K+++ +LQ+ Sbjct: 241 HFERLQWLKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQQ 300 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +++PRW I++KF ++ T L +++ Q+GRTG +TPVA+L+PV + G ++NATL Sbjct: 301 RLGFISKAPRWAIAYKFPAQEELTELNEVEFQVGRTGAITPVAKLKPVFVAGVTVSNATL 360 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L +I +GD V+++RAG+VIP+++ ++ + R DA+ FP+ Sbjct: 361 HNGDEIERL-----------NIAIGDTVIIRRAGDVIPQIIGVVHDRRPADARQIVFPTE 409 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S +VR G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 410 CPVCGSLIVR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQ 463 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E I PAD+F L T+ +++E + G S N S+ K +N +L RF Sbjct: 464 LVDRE----LIHTPADLFKLDL---TTLSRLERM---GPKSAENALTSLEKAKNTTLARF 513 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG A +LA ++ + + A N D L +VP VG+++A I Sbjct: 514 IFALGIRDVGEATALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVVANRIF 563 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKIQRHKAQ 667 F+ N+ VE L+ + G H + V + + K +V TGTL ++ R+ A+ Sbjct: 564 VFWHEAHNVAVVEDLIAQ-----GVHWETVDVQEVKENPFKGKTVVLTGTLSQMGRNDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + QLGA VS +S KTD +I G+ GSKL KA +LGV++++EE+FL Sbjct: 619 ALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFL 666 >gi|326564268|gb|EGE14498.1| NAD-dependent DNA ligase [Moraxella catarrhalis 103P14B1] Length = 691 Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust. Identities = 272/712 (38%), Positives = 402/712 (56%), Gaps = 47/712 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE+ +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ +I +E+RGEV Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + K F LN E IA G K +ANPRNAA+G LR+LN R L FF + + Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q +Q + LGF + + A + I ++Y + RS LP++IDGLV KV++ +L Sbjct: 254 TTQSGAMQWLGQLGFEIAPS-KVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN G++ R G + VGD V V RAG+VIPKV +I R DA+P P Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+CQS + + G+ +A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 FF+ ++ ADI+ L ++ + T + G GD SVT + +I K + +L Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFIF+LGIR VG A SLA+ + E+ +II D +L VP +G+I AQ+ Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577 Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I +F++ NI V+AL++ VS S + + V TGTL + R +A++ + Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|326574755|gb|EGE24691.1| NAD-dependent DNA ligase [Moraxella catarrhalis 101P30B1] Length = 691 Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust. Identities = 272/712 (38%), Positives = 402/712 (56%), Gaps = 47/712 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE+ +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ +I +E+RGEV Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + K F LN E IA G K +ANPRNAA+G LR+LN R L FF + + Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q +Q + LGF + + A + I ++Y + RS LP++IDGLV KV++ +L Sbjct: 254 TTQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN G++ R G + VGD V V RAG+VIPKV +I R DA+P P Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+CQS + + G+ +A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 FF+ ++ ADI+ L ++ + T + G GD SVT + +I K + +L Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFIF+LGIR VG A SLA+ + E+ +II D +L VP +G+I AQ+ Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577 Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I +F++ NI V+AL++ VS S + + V TGTL + R +A++ + Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|312112463|ref|YP_003990779.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1] gi|311217564|gb|ADP76168.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1] Length = 670 Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust. Identities = 263/723 (36%), Positives = 407/723 (56%), Gaps = 75/723 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A K + L + ++ ++ YY +P + DSEYD L + A+ +PDL + P+ Sbjct: 4 QAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTKDSPS-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG+ + KV H P LSL +N DLR F R+ +++ + + + E KI Sbjct: 62 -QRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRV----RQEVGDDVAYVCELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I ++P L LN P +E RGE Y+ Sbjct: 117 DGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLP--LRLNEPVTLEARGEAYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F LN++ G + +ANPRNAA+G LR+L+P +R+L+ FV+GL E+ Sbjct: 175 KASFERLNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELGIAS 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 L ++ LGF N R+ ++ + NE + R LPY+IDG+V KVD F+ Q+ Sbjct: 235 HSAALDYLQQLGFKTNPERRRCANMDEVIQFVNEWQEKRPQLPYEIDGIVIKVDSFAQQE 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG A+SPRW I++KF ++ T+L+DI++ +GRTG++TP A LEPV + G + ATL Sbjct: 295 QLGATAKSPRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQRATL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED+I+ +DIR+GD V++K+AG++IP+VV+++ + R + PF P+ Sbjct: 355 HNEDFIR-----------EKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVMPTH 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +VR G++ A RC C AQ E L HFVSR A NIEGLG++ + Sbjct: 404 CPECASELVR----IEGEV--ALRCINP-KCPAQIREGLIHFVSRQAMNIEGLGEKVISQ 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ I ADI+ L + Q ++ G+ S TNL +I + SLER Sbjct: 457 LFRE----GLIHDVADIYRLTKDQLIDLERM------GEKSATNLLHAIEASKQNSLERL 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSY---QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F LGIRHVGA+ A+ LA+++ + QN +E L+ + +G+ +A Sbjct: 507 LFGLGIRHVGAKAAKVLAEHFETMDRLQNATKE-------------ELMAIHEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEV-------------SPSIGRHEKNVSSEIENKKLVFTGT 657 +IV ++ P V+ LL E+ +P G +V S K +V TG Sbjct: 554 SIVTYFAKPE----VKELLNELRAYGVNMEYKGPKTPKPG----DVHSYFAGKTVVLTGK 605 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L+ + R++A+E + QLG V+ +S+ TD++I G + GSKL KAQQL ++I +E +FL Sbjct: 606 LESLSRNEAKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDETRFLEE 665 Query: 718 LQQ 720 ++Q Sbjct: 666 IEQ 668 >gi|253701546|ref|YP_003022735.1| DNA ligase, NAD-dependent [Geobacter sp. M21] gi|251776396|gb|ACT18977.1| DNA ligase, NAD-dependent [Geobacter sp. M21] Length = 668 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 267/709 (37%), Positives = 391/709 (55%), Gaps = 52/709 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L EI H+ YY+ P I D+EYDAL R + + PDLA P+ P Sbjct: 6 AAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASHPDLAL---PDSPTG 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG +V H+ P LSLE + +D+ F R+ RF I + EPK+DG Sbjct: 63 RVGGRPVAKFTQVRHTTPMLSLENAFTDKDIVDFDDRVKRFLGLSGQAEIGYVCEPKMDG 122 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 + + Y +G + RGDG GE+V+ ++ I IP R+ + P ++ VRGEVY+ Sbjct: 123 VAVELVYREGLLAIGSTRGDGVVGEEVTQNLKTIKDIPLRLQTEEPPRLLTVRGEVYLPL 182 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG 253 F N E G P+ANPRNAA+G LR+L+ + IT R L+ F + G+ + Sbjct: 183 EPFRKFNQEREEAGEPPFANPRNAAAGSLRQLD-SKITAKRPLSIFCYAPGEVDGVAFDS 241 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q L + PVN + + G++ YY+EM R LPY+IDG+V KVD FSLQ+ Sbjct: 242 QSHFLSTIPTWRIPVNPLTKLVSGVQGVLDYYHEMMEKRDDLPYEIDGVVVKVDRFSLQR 301 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LGE++RSPRW I+ KF +QA+T + DI Q+GRTG++TPVA LEPVN+ G +++ ATL Sbjct: 302 DLGEKSRSPRWAIAWKFPPRQATTVVNDIVPQVGRTGVITPVAHLEPVNVSGVMVSRATL 361 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN + ++ +DIR GD V+V+RAG+VIP VV ++V +R P Sbjct: 362 HNWEEME-----------RKDIRRGDTVVVERAGDVIPAVVQVLVEKRQGSETLLPVPQA 410 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C VVR G++ A RC GL C AQ LER+KHF +R A +I+GLG++ ++ Sbjct: 411 CPVCGGEVVR----IPGEV--AVRCV-GLNCPAQALERVKHFAARRAMDIDGLGEKFIEQ 463 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISL 550 + IR ADI+ L E+ + F G NL +SI + L Sbjct: 464 LLNLK----LIRNVADIYRLTE---------EDFMRFERMGKKLAENLLNSIAASKEREL 510 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R IF+LGIRHVG A+ LA + S +N +A +++ L+ IR VG +A Sbjct: 511 SRLIFALGIRHVGEHTAKLLAGAFGSMEN--------LAAASEEELTSIRE--VGPQVAA 560 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I +F+++ N+ + LKE + EK V K VFTG L+K R +A++ V Sbjct: 561 SIADFFKSEENLEVLRE-LKEHGVNPKAEEKRVGGRFTGKTFVFTGALEKFTRDEAKKMV 619 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G + +S+KTD ++ G + GSKLEKAQQLGV++++E+ FL L++ Sbjct: 620 ELEGGHAAGSVSKKTDYVVAGADAGSKLEKAQQLGVRVLSEDDFLELMR 668 >gi|332162521|ref|YP_004299098.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606605|emb|CBY28103.1| DNA ligase [Yersinia enterocolitica subsp. palearctica Y11] gi|325666751|gb|ADZ43395.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860741|emb|CBX71032.1| DNA ligase [Yersinia enterocolitica W22703] Length = 672 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 251/711 (35%), Positives = 411/711 (57%), Gaps = 49/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L ++ P Sbjct: 1 MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ +++ E F R++ ++ D + F E K Sbjct: 60 --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAD--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 MPLAGFEQLNNEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + L + R G PV++ V+ ++++Y +++ R L +DIDG+V KVD Sbjct: 236 -PRSHIQRLMQFRAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 DLQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++++R DA+ + Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEIT 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP+C S D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPEHCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + + + PAD+FTL + K+ + G S NL ++ K + + Sbjct: 458 IIEQLVEKQ----YVENPADLFTL------TAGKLTGLDRMGPKSAQNLIVALEKAKQTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA ++ + +N D +L VP VG+++A Sbjct: 508 FARFLYALGIREVGEATAANLAAHFRNLENL----------RAADIEALKSVPDVGEVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + +V F N +EAL K ++ + + + S K +V TG+L + R +A+ Sbjct: 558 KHVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 618 DRLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 668 >gi|315634861|ref|ZP_07890143.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393] gi|315476413|gb|EFU67163.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393] Length = 671 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 259/708 (36%), Positives = 408/708 (57%), Gaps = 57/708 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L + + YH+ Y+ P I DSEYD L + A+ P+L ++ P + Sbjct: 6 QQQIDDLRKTLRYHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELITADSPT---QR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKIDG 136 +G ++ H +P LSL+ ++ E+ F+ RI R + + F EPK+DG Sbjct: 63 VGARPLSEFAQIKHELPMLSLDNAFSDEEFLAFVKRIQDRLVLVPE--PLTFCCEPKLDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 ++I Y G AA RGDG +GED++ IR I IP ++L+ N P +EVRGEV++ Sbjct: 121 LAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPH 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKG 253 + F LN+ + G K +ANPRNAA+G LR+L+P + R L F + +G I Sbjct: 181 DGFERLNERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQGIDLPPT 240 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E LQ ++ +G PVN+ +R + ++++Y M RS+L YDIDG V KV++ LQ+ Sbjct: 241 HFERLQWLKSIGVPVNSEIRLCDGVENVLNFYRTMMEKRSSLGYDIDGTVLKVNDIELQQ 300 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+L+PV + G ++NATL Sbjct: 301 RLGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNATL 360 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L +I +GD V+++RAG+VIP+++ ++ + R +A+ FP+ Sbjct: 361 HNGDEIERL-----------NIAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQIVFPTR 409 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S +VR G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 410 CPVCDSLIVR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGVGAKLIEQ 463 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L T+ T++E + G S N S+ K ++ +L RF Sbjct: 464 LVDRE----LVHTPADLFKLDL---TTLTRLERM---GPKSAENALASLEKAKHTTLARF 513 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG A +LA ++ + + A N D L +VP VG+++A I Sbjct: 514 IFALGIRDVGEATALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVVANRIF 563 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKIQRHKAQ 667 F++ N+ V L+ + G H + V + + K +V TGTL ++ R+ A+ Sbjct: 564 VFWREEHNVAVVNDLIAQ-----GVHWETVEVQDVKENPFKGKTVVLTGTLSQMGRNDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + QLGA VS +S KTD +I G+ GSKL KA +LGV++++EE+FL Sbjct: 619 ALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFL 666 >gi|146312580|ref|YP_001177654.1| NAD-dependent DNA ligase LigA [Enterobacter sp. 638] gi|190359255|sp|A4WD23|DNLJ_ENT38 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145319456|gb|ABP61603.1| DNA ligase, NAD-dependent [Enterobacter sp. 638] Length = 671 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 256/715 (35%), Positives = 406/715 (56%), Gaps = 53/715 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 SIEQ +L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 3 SIEQ---QLTQLRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELV---TPD 56 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G S +V H +P LSL+ +++ E F R+ + D ++ + E Sbjct: 57 SPTQRVGAAPLASFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSAD--TLTWCCEL 114 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191 K+DG ++I YE G V AA RGDG +GED++A +R I IP L NIP +EVRGEV Sbjct: 115 KLDGLAVSILYENGLLVRAATRGDGTTGEDITANVRTIRAIPLTLRGDNIPARLEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG-KTSEI 249 ++ + F +NDE G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 175 FLPQKGFEKINDEARRTGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGV 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 L + + G PV+N V+ ++ ++++Y++++ R +L +DIDG+V KV+ Sbjct: 235 LPDTHLGRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPSLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++ Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER D + Sbjct: 355 NATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPDDTREIV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G++V RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPAHCPVCGSDVER----VEGEVVT--RCTGGLICGAQRKEALKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L S K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFRL------SAGKLTGLDRMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA ++ + + + DD L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAHFGTLEQLEKA-------TIDD---LQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL+E +P + E+ + S K +V TG+L ++ R Sbjct: 558 THVFNFFAEESNRDVIGKLLEEGIHWPAPVVINVEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + +GA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L L + Sbjct: 617 AKARLVAIGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLFGE 671 >gi|311104688|ref|YP_003977541.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8] gi|310759377|gb|ADP14826.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8] Length = 702 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 265/722 (36%), Positives = 396/722 (54%), Gaps = 70/722 (9%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 EI H+ YY Y +P I D+EYD L R A+ P+L P P ++G + Sbjct: 20 EIEQHNVRYYVYDEPSISDAEYDGLMRELQALEAEHPELV---TPESPTQRVGAAPVSAF 76 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-----DNSIFFTLEPKIDGTMITI 141 V H +P LSL ++ ED+ F R+ + + +F E K+DG I++ Sbjct: 77 GSVRHVVPMLSLGNAFDEEDVAAFDRRVTDTLRGAGLLGPAQQADYFC-ELKLDGLAISL 135 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 RYE G+ V AA RGDG +GEDV++ IR I IP L P+++EVRGEV +++ DF L Sbjct: 136 RYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGTFPKVLEVRGEVLMNRADFEKL 195 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS------------- 247 N K + NPRNAA+G LR+L+P R L FF +G G+ Sbjct: 196 NQAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVQGLAGTQGGLFAEA 255 Query: 248 --------EIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 ++ K ML + LG PVN +A+ G++++Y ++ +R LPYD Sbjct: 256 SAGAAEASQLPEKSHGAMLDWLASLGLPVNVKHNHRASGAEGLMAFYAKVGKLRPELPYD 315 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD QK LG AR+PR+ ++HKFA ++A+T LLDI++Q+GRTG +TPVARL Sbjct: 316 IDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIEVQVGRTGAITPVARL 375 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV +GG +TNATLHNED I+ +D+R+GD V+V+RAG+VIP+V+ ++ Sbjct: 376 KPVFVGGVTVTNATLHNEDEIR-----------RKDVRIGDTVIVRRAGDVIPEVLGPVL 424 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 +R DA+ F P+ CPIC S + R L +T RCTGGL C AQ+ + L H SR Sbjct: 425 EKRPDDAREFVMPTACPICGSAIER-LEDET-----IARCTGGLFCGAQRKQTLWHAASR 478 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +IEGLG++ +D S ++ AD+++L+ + ++ G S NL Sbjct: 479 KALDIEGLGEKLVDQLVDSG----RVKTLADLYSLRPLELVGLDRM------GQKSADNL 528 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I+K R +L R +++LGIRHVG AR +A+++ S I+ I+ + D +L Sbjct: 529 VAAIDKARAPALNRLLYALGIRHVGETTARDVARHFGS-------IDAIMDADED---AL 578 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 VP VG ++A +I F+ N +E L + + ++ + K V TGTL Sbjct: 579 SSVPDVGPVVAASIRRFFAEQHNRDVIEQLKAQGVNPVAEAAPQATT-LAGKTFVLTGTL 637 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A + G VS +S+KT ++ G++ GSKL KAQ+LGV +++E+ LL Sbjct: 638 PNWTREEASMRIQAAGGKVSGSVSKKTAYLVAGEDSGSKLAKAQELGVTVLDEDGLKTLL 697 Query: 719 QQ 720 + Sbjct: 698 GE 699 >gi|30249713|ref|NP_841783.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718] gi|75540341|sp|Q82TW6|DNLJ_NITEU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|30180750|emb|CAD85664.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718] Length = 681 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 264/723 (36%), Positives = 404/723 (55%), Gaps = 68/723 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L +L I+ HD YY P+I D+EYDAL R + +P L P+ P ++ Sbjct: 9 ERLQALRAAIALHDFHYYVQDAPVIPDAEYDALFRTLQQLEQQYPHLV---TPDSPTQRV 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++TH P LSL ++ E++ F RI + + + + + +EPK DG Sbjct: 66 GAPPLKVFAQLTHQTPMLSLANAFSEEEVTAFDRRI---REALNIDRVDYAVEPKFDGLA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVYISKND 197 I++ Y G A RGDG++GED++ +R IP+IP L + P EVRGEV + K D Sbjct: 123 ISLIYANGILTKGATRGDGYTGEDITLNLRTIPSIPLRLQVPFPTGQFEVRGEVVMLKTD 182 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE---IFAK 252 F LN++ G K + NPRNAA+G LR+L+ + IT R L FF +G+G E IF+ Sbjct: 183 FERLNEQQRKNGEKTFVNPRNAAAGSLRQLD-SRITAMRRLTFFAYGIGAYHEDQPIFST 241 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTF---HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E+L + F V RQ++T +G+++YY EM ++R +LPY+IDG+VYKV++ Sbjct: 242 -HSEILAYLATQQFLV---ARQSSTVMGANGLLAYYREMNAVRLSLPYEIDGVVYKVNDL 297 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q++LG +R+PR+ I+HKF ++ ST LL I+IQ+GRTG LTPVARL PV +GG +T Sbjct: 298 AQQEKLGYVSRAPRFAIAHKFPAQEVSTELLAIEIQVGRTGALTPVARLAPVFVGGVTVT 357 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNED ++ + I +GD V+V+RAG+VIP+VV +IV R AQ F Sbjct: 358 NATLHNEDEVQ-----------RKQIMIGDTVIVRRAGDVIPEVVAVIVERRPTHAQAFV 406 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C S+ VR + A RCTGGL C AQ+ + + HF SR A +I+GLG++ Sbjct: 407 MPDHCPVCGSKAVRLPDE------AVTRCTGGLYCPAQRKQAILHFASRRAIDIDGLGEK 460 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRR 546 +D E + PAD++ L I+ + G S NL +I + Sbjct: 461 LVDQLIDRE----LVHTPADLYRL---------DIDTLAGLERMAGKSARNLVTAIEDSK 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIRHVG A++LA + +++ ++ N + L ++P +G Sbjct: 508 KTTLPRFIYALGIRHVGEATAKALASH-------TGDLDRLMDMNAE---QLQQIPDIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 I+AQ+I +F+ N +E LL E I + + + K V TGTL + Sbjct: 558 IVAQSIADFFSEAHNREVIEQLLSCGLQWEKPSHIAQPSSRTNLAVPGKTFVLTGTLPTM 617 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+ + Q G V+ +S T ++ G +PGSK +A +LG+ +++E+Q L LL+ Sbjct: 618 TRDQAKNRIEQQGGKVTGSVSSATSYVVAGSDPGSKYARAIELGIPVLDEDQLLSLLRDT 677 Query: 722 NTT 724 +++ Sbjct: 678 SSS 680 >gi|238785571|ref|ZP_04629551.1| DNA ligase [Yersinia bercovieri ATCC 43970] gi|238713506|gb|EEQ05538.1| DNA ligase [Yersinia bercovieri ATCC 43970] Length = 670 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 254/710 (35%), Positives = 414/710 (58%), Gaps = 47/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L S+ P Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLESQHPELITSDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ +++ E F R++ ++ + + F E K Sbjct: 60 --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRTE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250 + + F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+N V+ ++++Y +++ R+ L +DIDG+V KVD+ Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVQLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R DA+ +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PEHCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L + K+ + G S NL ++ + + + Sbjct: 459 IEQLVEKQ----YVENPADLFEL------TAGKLTGLDRMGPKSAQNLIVALERAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA + ++N A N+ A + D+ S VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAH---FRNMA----NLRAADIDELKS---VPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +EAL K +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVLNFLGEEHNQRVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +T LGA VS +SRKTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 RLTALGAKVSGSVSRKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668 >gi|295401729|ref|ZP_06811695.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius C56-YS93] gi|294976216|gb|EFG51828.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius C56-YS93] Length = 670 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 263/723 (36%), Positives = 407/723 (56%), Gaps = 75/723 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A K + L + ++ ++ YY +P + DSEYD L + A+ +PDL + P+ Sbjct: 4 QAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTKDSPS-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG+ + KV H P LSL +N DLR F R+ +++ + + + E KI Sbjct: 62 -QRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRV----RQEVGDDVAYVCELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I ++P L LN P +E RGE Y+ Sbjct: 117 DGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLP--LRLNEPVTLEARGEAYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F LN++ G + +ANPRNAA+G LR+L+P +R+L+ FV+GL E+ Sbjct: 175 KASFERLNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELGIAS 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 L ++ LGF N R+ ++ + NE + R LPY+IDG+V KVD F+ Q+ Sbjct: 235 HSAALDYLQQLGFKTNPERRRCANMDEVMQFVNEWQEKRPQLPYEIDGIVIKVDSFAQQE 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG A+SPRW I++KF ++ T+L+DI++ +GRTG++TP A LEPV + G + ATL Sbjct: 295 QLGATAKSPRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQRATL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED+I+ +DIR+GD V++K+AG++IP+VV+++ + R + PF P+ Sbjct: 355 HNEDFIR-----------EKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVMPTH 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +VR G++ A RC C AQ E L HFVSR A NIEGLG++ + Sbjct: 404 CPECASELVR----IEGEV--ALRCINP-KCPAQIREGLIHFVSRQAMNIEGLGEKVISQ 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ I ADI+ L + Q ++ G+ S TNL +I + SLER Sbjct: 457 LFRE----GLIHDVADIYRLTKDQLIDLERM------GEKSATNLLHAIEASKQNSLERL 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSY---QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F LGIRHVGA+ A+ LA+++ + QN +E L+ + +G+ +A Sbjct: 507 LFGLGIRHVGAKAAKVLAEHFETMDRLQNATKE-------------ELMAIHEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEV-------------SPSIGRHEKNVSSEIENKKLVFTGT 657 +IV ++ P V+ LL E+ +P G +V S K +V TG Sbjct: 554 SIVTYFAKPE----VKELLNELRAYGVNMEYKGPKTPKPG----DVHSYFAGKTVVLTGK 605 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L+ + R++A+E + QLG V+ +S+ TD++I G + GSKL KAQQL ++I +E +FL Sbjct: 606 LESLSRNEAKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDETRFLEE 665 Query: 718 LQQ 720 ++Q Sbjct: 666 IEQ 668 >gi|325121133|gb|ADY80656.1| DNA ligase [Acinetobacter calcoaceticus PHEA-2] Length = 679 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 270/721 (37%), Positives = 395/721 (54%), Gaps = 59/721 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ R+ L Q I+ H+ YY +P I DSEYD L + A+ +PDL +S+ P Sbjct: 7 IEQMRQ----LIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQSDSPT- 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 K+GG+ VTH +P LSL ++N EDL F R+ ++ + + + +E K Sbjct: 62 --TKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVELK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGE 190 +DG I++ YE G V RGDG +GED++ ++ I +P+VL IP ++EVRGE Sbjct: 117 LDGLAISLWYENGLLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPHLLEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V + K+ F LN E A G K +ANPRNAA+G LR+L+P R L F+ +G+ + Sbjct: 177 VLMPKSGFEKLNAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPN 236 Query: 250 FA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ LQ + LGF + N+ + Y +++ RS L +IDG+V KVD+ Sbjct: 237 HGLTTMHDSLQWLTKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKVDD 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG + Sbjct: 297 LKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +N TLHN I L D+RVGD V V R G+VIPKV + R DA+ Sbjct: 357 SNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAEIV 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGLG Sbjct: 406 HLPENCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGD 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + ++ ADI+ L ++T + I G+ SV NL D+I + Sbjct: 460 RWVESLLHLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASKKT 511 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGIR VG AR LA + + + A D +L + P VGDI Sbjct: 512 TLARFIYALGIRGVGETTARMLANTFQTLE----------ALKAADVEALKKTPDVGDIT 561 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664 A+ I +F+ P NI ++ L+ + G H ++ + + V TGTL+++ R Sbjct: 562 AEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRD 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y T Sbjct: 617 QATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQT 676 Query: 725 L 725 L Sbjct: 677 L 677 >gi|157144662|ref|YP_001451981.1| NAD-dependent DNA ligase LigA [Citrobacter koseri ATCC BAA-895] gi|166215574|sp|A8ADI2|DNLJ_CITK8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157081867|gb|ABV11545.1| hypothetical protein CKO_00382 [Citrobacter koseri ATCC BAA-895] Length = 671 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 253/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PSQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSGDKLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G + AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLISAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y++++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPEAVLDFYHKVEEDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G Sbjct: 292 NSMALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PVEFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVG 605 + RF+++LGIR VG A LA Y+ + + A I+ L +VP VG Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIDE-----------LQKVPDVG 553 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E I + + S K +V TG+L + Sbjct: 554 IVVATHVFNFFAEESNRDVIGQLLAEGIHWPAPIVVNADEIDSPFAGKTIVLTGSLSLMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669 >gi|166216290|sp|Q0AHH6|DNLJ_NITEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 683 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 260/715 (36%), Positives = 397/715 (55%), Gaps = 54/715 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L +L I+ HD YY PII D++YD L R + +P L P+ P ++ Sbjct: 9 ERLKALRSTIALHDFHYYVQDAPIIPDADYDKLFRTLQQLEQQYPHLIT---PDSPTQRV 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++TH P LSL + ++ F RI + + + + + +EPK DG Sbjct: 66 GAPPLKVFARLTHQTPMLSLTNAFTEDEAIAFDKRI---REALNVDQVNYAVEPKFDGLA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ Y G A RGDG++GED++ +R IP+IP R+ + + + EVRGEV + K D Sbjct: 123 VSLVYTNGILTNGATRGDGYTGEDITLNLRTIPSIPLRLQTATVTDQFEVRGEVVMLKAD 182 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG--LGKTSEIFAKG 253 F LN++ G K +ANPRNAA+G LR+L+ ++IT R L FF + L + F Sbjct: 183 FEHLNEQQRNKGEKLFANPRNAAAGSLRQLD-SNITAARKLTFFAYDAVLSHKDQPFFSK 241 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E+L ++ F V G+++YY+EM ++R +LPY+IDG+VYKVD + Q+ Sbjct: 242 HSEILDYLKSQQFLVAQQNGTTTGVAGLLTYYHEMGALRLSLPYEIDGVVYKVDNLTQQE 301 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG +R+PR+ I+HKF ++AST LL I+IQ+GRTG LTPVARL PV +GG +TNATL Sbjct: 302 TLGYVSRAPRFAIAHKFPAQEASTELLTIEIQVGRTGALTPVARLAPVFVGGVTVTNATL 361 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED ++ + I +GD V+V+RAG+VIP+VV +I +R AQPF P Sbjct: 362 HNEDEVQ-----------RKQIMIGDTVIVRRAGDVIPEVVAVIPEQRPAHAQPFIMPDH 410 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S+ R G+ V RCTGGL C AQ+ + + HF SR A +I+GLG++ +D Sbjct: 411 CPVCGSKAAR----LPGEAVT--RCTGGLYCPAQRKQAIWHFASRRALDIDGLGEKLIDQ 464 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD++ L + + ++ + S NL +I + +L RF Sbjct: 465 LIDRE----LVHTPADLYKL------NIDTLASLERMAEKSARNLVTAIEHSKKTTLPRF 514 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I++LGIRHVG A++LA N A ++ ++ D L ++P VG I+AQ+I+ Sbjct: 515 IYALGIRHVGEATAKALA-------NQASHLDQLMTL---DIEQLQQIPDVGPIVAQSII 564 Query: 614 EFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +F+ N + LL E+ + + +S + K V TGTL + R +A+ Sbjct: 565 DFFSEAHNREVIRQLLDSGLQWEIPNHGVQQSEQTNSAVSGKTFVLTGTLPTMTRDQAKI 624 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + Q G V+ +S T ++ G +PGSK KA LG+ +++E+Q L LLQ +T Sbjct: 625 KIEQQGGKVTGSVSSATSYVVAGSDPGSKYAKAIGLGISVLDEDQLLSLLQNIST 679 >gi|256822391|ref|YP_003146354.1| NAD-dependent DNA ligase [Kangiella koreensis DSM 16069] gi|256795930|gb|ACV26586.1| DNA ligase, NAD-dependent [Kangiella koreensis DSM 16069] Length = 667 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 259/709 (36%), Positives = 407/709 (57%), Gaps = 59/709 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + K ++ L + ++ YY P + D+EYD L R I P+L S+ P Sbjct: 1 MSELEKRVAELRVTLDNYNHQYYVLDDPSVPDAEYDRLLRELQQIESEHPELISSDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + + +VTH +P LSL+ + ++L F R+ ++ I + EPK Sbjct: 60 --QRVGAKPDNGFQEVTHELPMLSLDNAMSDDELVSFNKRVQDRLNTTEN--IEYVCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ V A RGDG +GE+++ +R I IP ++ PE IE+RGEV+ Sbjct: 116 LDGLAVSLLYENGQLVRGATRGDGTTGENITLNVRTIRAIPLKLRGTETPERIEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF- 250 + K F +LN+E G K +ANPRNAA+G LR+L+P+ R L+F+ + +G S+ F Sbjct: 176 MPKAVFESLNEEAREQGAKSFANPRNAAAGSLRQLDPSITAKRQLSFYAYSMGLVSDDFK 235 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A ++ L++++ G PV++ ++ G ++Y+ + R +L Y+IDG+V KV+ Sbjct: 236 LANTHFDRLEQIKTFGLPVSSEIKLVKGAEGCLAYHQSISEKRDSLGYEIDGVVNKVNSI 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG AR+PRW I+HKF ++ T+L+ +D Q+GRTG LTPVARLEPV++GG ++ Sbjct: 296 ELQEELGFVARAPRWAIAHKFPAQEEMTQLIGVDFQVGRTGALTPVARLEPVSVGGVTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D IK LDA R+GD V+++RAG+VIP+VV II+ +R +A+ Sbjct: 356 NATLHNMDEIKRLDA-----------RIGDTVIIRRAGDVIPQVVSIILEKRPSNAEIIL 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C S V R AA RCTGGL CSAQ+ E +KHF SR A +I+GLG + Sbjct: 405 TPEQCPVCNSPVERTEGE------AAIRCTGGLICSAQRKEAIKHFASRKAMDIDGLGDK 458 Query: 490 QLDFF-----FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 ++ F +S + I+ DI L R G+ S NL ++ Sbjct: 459 LVEIFAEKGMVQSISDLYRIK-AGDIAALDR--------------MGEKSAENLIGALEH 503 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +N +L +F++SLGIR VG A+++A ++L+ ++ II + ++ S VP V Sbjct: 504 SKNTTLPKFLYSLGIREVGEVTAKNIAHHFLT-------LDGIIKASQEELES---VPDV 553 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQ 662 G I+A I F+ N N+ +E LK++ + +K E ++ K V TGTL+ I Sbjct: 554 GPIVAHHIRAFFDNVENLEQIEE-LKDLGVNWPDIKKKSDDELPLKGKTYVITGTLEGIS 612 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 R +A+ + LGA VS +S KT +I G + GSKL+KAQ+LGV+++++ Sbjct: 613 RPEAKAKLEALGAKVSGSVSSKTTALIAGASAGSKLKKAQELGVEVLDQ 661 >gi|326559356|gb|EGE09783.1| NAD-dependent DNA ligase [Moraxella catarrhalis 7169] Length = 691 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 272/712 (38%), Positives = 402/712 (56%), Gaps = 47/712 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ +I +E+RGEV Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + K F LN E IA G K +ANPRNAA+G LR+LN R L FF + + Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q +Q + LGF + + + A + I ++Y + RS LP++IDGLV KV++ +L Sbjct: 254 TTQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN G++ R G + VGD V V RAG+VIPKV +I R DA+P P Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+CQS + + G+ +A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 FF+ ++ ADI+ L ++ + T + G GD SVT + +I K + +L Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFIF+LGIR VG A SLA+ + E+ +II D +L VP +G+I AQ+ Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577 Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I +F++ NI V+AL++ VS S + + V TGTL + R +A++ + Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|293609092|ref|ZP_06691395.1| DNA ligase [Acinetobacter sp. SH024] gi|292829665|gb|EFF88027.1| DNA ligase [Acinetobacter sp. SH024] Length = 679 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 271/721 (37%), Positives = 395/721 (54%), Gaps = 59/721 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ R+ L Q I+ H+ YY +P I DSEYD L + A+ +PDL +S+ P Sbjct: 7 IEQMRQ----LIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQSDSPT- 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 K+GG+ VTH +P LSL ++N EDL F R+ ++ + I + +E K Sbjct: 62 --TKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKIQYEVELK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGE 190 +DG I++ YE G + RGDG +GED++ I+ I +P+VL IP ++EVRGE Sbjct: 117 LDGLAISLWYENGVLIRGVTRGDGETGEDITQNIKTIRNLPKVLHSDHFEIPRLLEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V + K+ F LN E A G K +ANPRNAA+G LR+L+P R L F+ +G+ + Sbjct: 177 VLMPKSGFEKLNAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPN 236 Query: 250 FA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ LQ + LGF + N+ + Y +++ RS L +IDG+V KVD+ Sbjct: 237 HGLTTMHDSLQWLIKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKVDD 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG + Sbjct: 297 LKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +N TLHN I L D+RVGD V V R G+VIPKV + R DA+ Sbjct: 357 SNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAEVV 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGLG Sbjct: 406 HLPENCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGD 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + ++ ADI+ L ++T + I G+ SV NL D+I + Sbjct: 460 RWVESLLHLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASKKT 511 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGIR VG AR LA + + + A D +L + P VGDI Sbjct: 512 TLARFIYALGIRGVGETTARMLANTFQTLE----------ALKAADVEALKKTPDVGDIT 561 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664 A+ I +F+ P NI ++ L+ + G H ++ + + V TGTL+++ R Sbjct: 562 AEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRD 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y T Sbjct: 617 QATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQT 676 Query: 725 L 725 L Sbjct: 677 L 677 >gi|254508455|ref|ZP_05120575.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16] gi|219548665|gb|EED25670.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16] Length = 669 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 260/711 (36%), Positives = 403/711 (56%), Gaps = 51/711 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q +++L+ L + + YH YY P I D+EYD L R + P+L + P+ Sbjct: 3 QQIQEKLNQLRESLHYHGIKYYVEDAPEIPDAEYDRLMRELIELEAQNPNLISVDSPS-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI-FFTLEPK 133 ++GG V H IP LSL+ ++ ++L F R+ + +S+ F EPK Sbjct: 61 -QRVGGAPLDGFTPVAHEIPMLSLDNAFDDDELNAFHKRML---DRVAGSSVEAFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++ +R I IP ++ P IEVRGEV+ Sbjct: 117 LDGLAVSLLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLCGEGWPARIEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEI 249 + K F LN+ + G K + NPRNAA+G LR+L+ + IT R L+F+ + +G Sbjct: 177 MPKAGFEKLNEHALKKGEKVFVNPRNAAAGSLRQLD-SRITAKRPLSFYAYSVGVVEGAA 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ YE +++ G P+ RQ + + +YY ++ R L Y+IDG+V KVD Sbjct: 236 LSESHYERFLQLKSWGLPMCPETRQVESLDDVKAYYKDILQRRDQLAYEIDGVVIKVDSI 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++ Sbjct: 296 ELQERLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I L +++GD V+++RAG+VIP++V ++ R DA+ Sbjct: 356 NATLHNADEIARL-----------GVKIGDSVVIRRAGDVIPQIVSVVAERRPDDAREIV 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FPS CP+C S+V R G+ VA RC+GGL C AQ+ E LKHFVSR A +++GLG + Sbjct: 405 FPSQCPVCNSQVER----VEGEAVA--RCSGGLVCQAQRKEALKHFVSRKALDVDGLGVK 458 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E + PAD+F L S I + G S N+ D++ K + + Sbjct: 459 VIEQLVDRE----MVETPADLFKL------SAGIITVLDRMGPKSAQNVVDALAKAKQTT 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF++SLGIR VG A +LA ++ + ++ I A +++ LI VP +GDI+A Sbjct: 509 LARFLYSLGIREVGEATAANLALHF-------KTLDAIKAASHE---QLIAVPDIGDIVA 558 Query: 610 QAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I F+ N ++ L+ + P I ++V + K +V TG+L ++ R+ A+ Sbjct: 559 SHITAFFAQDNNQSVIDDLIAQGICWPDIEEKGEDVPQPLAGKTVVLTGSLSQLSRNDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI+ G+N GSKL KAQ+LGV+I E+ + LL Sbjct: 619 AALQNLGAKVTGSVSKKTDILFAGENAGSKLSKAQELGVEIRTEQDLIDLL 669 >gi|123441550|ref|YP_001005536.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166216254|sp|A1JLA4|DNLJ_YERE8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|122088511|emb|CAL11304.1| DNA ligase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 672 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 251/711 (35%), Positives = 410/711 (57%), Gaps = 49/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L ++ P Sbjct: 1 MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ +++ E F R++ ++ D + F E K Sbjct: 60 --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAD--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 MPLAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + L + + G PV+ V+ ++++Y +++ R L +DIDG+V KVD Sbjct: 236 -PRSHIQRLMQFKAWGLPVSERVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 DLQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++++R DA+ + Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEIT 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP+C S D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPEHCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + + + PAD+FTL + K+ + G S NL ++ K + + Sbjct: 458 IIEQLVEKQ----YVENPADLFTL------TAGKLTGLDRMGPKSAQNLIVALEKAKQTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA ++ + +N D +L VP VG+++A Sbjct: 508 FARFLYALGIREVGEATAANLAAHFRNLENL----------RAADIEALKSVPDVGEVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + +V F N +EAL K ++ + + + S K +V TG+L + R +A+ Sbjct: 558 KHVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 618 DRLAALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668 >gi|295688860|ref|YP_003592553.1| DNA ligase, NAD-dependent [Caulobacter segnis ATCC 21756] gi|295430763|gb|ADG09935.1| DNA ligase, NAD-dependent [Caulobacter segnis ATCC 21756] Length = 783 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 253/615 (41%), Positives = 364/615 (59%), Gaps = 26/615 (4%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 LIP+ L+ QA +EL L E++ HD Y+Q P I D++YDALKRR I FP L Sbjct: 3 LIPVADLTEAQAVEELERLADELTRHDLAYHQQDNPTISDADYDALKRRNLDIETRFPHL 62 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R N P ++G V H +P LSL+ ++ ++ +F R+ RF + + Sbjct: 63 VRD---NSPSMRVGAARAEQFSPVRHGVPMLSLDNAFSNDEAEEFDARVRRFLRLSPSET 119 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184 + +T EPKIDG ++RYEKG V A RGDG +GEDV+A +R I IP R+ P++ Sbjct: 120 LAYTAEPKIDGLSASLRYEKGVLVQGATRGDGQTGEDVTANLRTIADIPHRLKGSGWPDV 179 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 IEVRGEVY+ F A N G++ YANPRN A+G LR+++ T R L FF + Sbjct: 180 IEVRGEVYVELEAFAAFNKAAEDAGQRTYANPRNFAAGSLRQIDSTISAQRPLRFFGYAW 239 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G SE FA GQ+E L+K+R GF R+ G++ Y E +++R TL +DIDG+ Sbjct: 240 GLVSEPFAGGQWEALEKLRSWGFVTTAPPARRVENAQGLLDVYAEFEALRPTLNFDIDGV 299 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYKVD+ LQ++LG +RSPRW I+ KF ++A T L ID+Q+GRTG +TPVARL+PV Sbjct: 300 VYKVDDLELQRRLGFVSRSPRWAIARKFPAQKARTLLEAIDLQVGRTGAITPVARLKPVT 359 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER- 421 +GG ++TNATLHN D I+ LDA R+GD V+V+RAG+VIP++V++ ++ R Sbjct: 360 VGGVVVTNATLHNGDEIERLDA-----------RIGDTVVVQRAGDVIPQIVEVALDARP 408 Query: 422 HPDAQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 P +P+ FP CP ++ + R++N +G+ RCTG AC Q++E L+HFVSR A Sbjct: 409 DPAPEPYVFPHECPCPLKTPLAREVN-ASGQESVVRRCTGEFACPFQRVEHLRHFVSRRA 467 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 F+IEGLG++QL FF D + I PADIF L R ++ + G+G+ SV NL Sbjct: 468 FDIEGLGEKQLQAFF---DEGW-ITEPADIFKLARDEE-KLAALREREGYGETSVANLAR 522 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII-AHNNDDWLSLI 599 I RR I+++R I+ LG R +G + LA+ + +++ + A + +L L Sbjct: 523 GIEARRTITMDRMIYGLGARDIGETTSTVLARNFDRFEDLQEAAEKAARALPGETYLELS 582 Query: 600 RVPLVGDIIAQAIVE 614 P VG ++VE Sbjct: 583 TAPGVGPKALDSLVE 597 Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 76/128 (59%), Gaps = 3/128 (2%) Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENK 650 DD+L L + VG + AQ++ F+ N V L+ E+ I EK + + K Sbjct: 656 GDDYLHLAAIDGVGPVAAQSLARFFAEDHNRQKVANLVAELD--IQPVEKPKTDTAVAGK 713 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +VFTG L+K+ R +A+ LGA V++ +S+KTD+++ G GSKL+ A +LG+++M Sbjct: 714 TIVFTGALEKMTRDEAKAQAEGLGAKVASSVSKKTDLVVAGPGAGSKLKTATELGIQVMT 773 Query: 711 EEQFLFLL 718 E+++L L+ Sbjct: 774 EDEWLALV 781 >gi|326569993|gb|EGE20040.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC1] Length = 691 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 272/712 (38%), Positives = 402/712 (56%), Gaps = 47/712 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ +I +E+RGEV Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + K F LN E IA G K +ANPRNAA+G LR+LN R L FF + + Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q +Q + LGF + + + A + I ++Y + RS LP++IDGLV KV++ +L Sbjct: 254 TTQSGAMQWLGQLGFEIAS-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN G++ R G + VGD V V RAG+VIPKV +I R DA+P P Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+CQS + + G+ +A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 FF+ ++ ADI+ L ++ + T + G GD SVT + +I K + +L Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFIF+LGIR VG A SLA+ + E+ +II D +L VP +G+I AQ+ Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577 Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I +F++ NI V+AL++ VS S + + V TGTL + R +A++ + Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|254247879|ref|ZP_04941200.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184] gi|124872655|gb|EAY64371.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184] Length = 691 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 261/709 (36%), Positives = 399/709 (56%), Gaps = 54/709 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L R + P+L P+ P ++GGE Sbjct: 20 LRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVT---PDSPTQRVGGEAA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + ED+ F R+ K D + + + E K DG Sbjct: 77 GGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++RYE+G FV AA RGDG +GEDV+ +R I +IP ++ ++P +++VRGEV + K Sbjct: 137 AISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKG 253 DF LN+ A ++ +ANPRNAA+G LR+L+ + IT R L+FF +G+G + Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLDGMPMPDT 255 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +L LG PVN + G++ ++ ++ R +LPYDIDG+VYKV+ Q+ Sbjct: 256 HSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQE 315 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATL Sbjct: 316 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 375 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F P+ Sbjct: 376 HNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTE 424 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 425 CPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQ 478 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + +R PAD+F L + + F + S NL DS+ K ++ +L RF Sbjct: 479 LVELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARF 528 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+ LGIRHVG A+ LAK++ S + I+ + ++ L+ V VG I+A++I Sbjct: 529 IYGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESIH 578 Query: 614 EFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +F+ N +E L K P K + K +V TGTL + R A+E + Sbjct: 579 QFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEML 638 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 639 EAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|260912664|ref|ZP_05919150.1| DNA ligase [Pasteurella dagmatis ATCC 43325] gi|260633042|gb|EEX51207.1| DNA ligase [Pasteurella dagmatis ATCC 43325] Length = 673 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 266/725 (36%), Positives = 412/725 (56%), Gaps = 67/725 (9%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PI+ +EQ RK L E + Y+ P + D+EYD L + + +P Sbjct: 4 PIQ-FEMEQLRKTLRRYEYQ-------YHVLDNPTVPDAEYDRLFHQLKKLEREYPQFI- 54 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSI 126 +ED P ++G + +VTH IP LSL+ +++ ++ + F+ RI R + Sbjct: 55 TED--SPTQRVGAKPLSGFAQVTHEIPMLSLDNVFSDDEFKAFVKRIQDRLLVLP--KQL 110 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 F EPK+DG ++I Y GK V AA RGDG +GED+++ IR I IP ++L N P + Sbjct: 111 TFCCEPKLDGLAVSILYVDGKLVQAATRGDGTTGEDITSNIRTIRNIPLQLLMDNPPGRL 170 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHG 242 EVRGEV++ + F ALN++ + G K +ANPRNAA+G LR+L+P ++ LN + G Sbjct: 171 EVRGEVFMPQAGFEALNEQALIKGEKTFANPRNAAAGSLRQLDPKITSQRPLVLNAYSIG 230 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + E+ +E LQ ++ +G PVNN ++ + ++ +Y + RS L YDIDG Sbjct: 231 IAEGVELPVT-HFERLQWLKSIGIPVNNEIQLCDGIENVLDFYRTIMKKRSDLGYDIDGT 289 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V K++E +LQ++LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+L PV Sbjct: 290 VLKINEIALQQELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLAPVF 349 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++NATLHN D I L D+ +GD V+++RAG+VIP+++ ++ +R Sbjct: 350 VAGVTVSNATLHNGDEIARL-----------DVAIGDTVIIRRAGDVIPQIIGVVHEKRP 398 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 DA+ FPS CP+C S +VR G+ VA RCTGGL C+AQ+ E LKHFVSR A + Sbjct: 399 ADAKKIEFPSNCPVCDSIIVR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMD 452 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+G+G + ++ E I PAD+F L T+ ++E + G S N DS+ Sbjct: 453 IDGVGAKLIEQLVDRE----QIHTPADLFKLDL---TTLMRLERM---GPKSAQNALDSL 502 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K + +L RFIF+LGIR VG A +LA Y+ + A L +V Sbjct: 503 EKAKKTTLARFIFALGIREVGEATALNLANYF----------KTLTALKEATLEQLQQVQ 552 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS------SEIENKKLVFTG 656 VG+++A I F++ P N+ V+ LL + G H V + + K +V TG Sbjct: 553 DVGEVVANRIFVFWREPHNVEVVDDLLAQ-----GIHWDAVEITEANDNPFKEKTIVLTG 607 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++ R +A+ + +LGA VS +S KTD++I G++ GSKL KA +L V++++E+ FL Sbjct: 608 TLTQMGRTEAKALLQRLGAKVSGSVSAKTDLVIAGESAGSKLTKANELNVQVIDEQTFLD 667 Query: 717 LLQQY 721 + Y Sbjct: 668 WSEPY 672 >gi|323143662|ref|ZP_08078336.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066] gi|322416595|gb|EFY07255.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066] Length = 696 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 259/714 (36%), Positives = 406/714 (56%), Gaps = 63/714 (8%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY PI+ DSEYD L R+ + + A P + P+ P ++GG+ + VTH + Sbjct: 21 AYYVDDDPIVTDSEYDRLYRQLEIMEQADPTII---SPDSPTRRVGGQALSAFASVTHRV 77 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL I+++ +L F RI F ++ + + EPK+DG +++ YE G V AA Sbjct: 78 PLLSLGDIFSVSELNDFNERICDFTHEE---KVEYCAEPKLDGLAVSLIYENGLLVKAAT 134 Query: 154 RGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG GED++ + I IP R+ N+P ++VRGEV++ ++ F N+ G K Sbjct: 135 RGDGRVGEDITENAKTIKAIPLRLSGENVPSYLDVRGEVFMPRDGFEKWNERARQNGGKV 194 Query: 213 YANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270 +ANPRNAA+G LR+L+ + IT R L F + +G+ S QY+ L ++ G PVN Sbjct: 195 FANPRNAAAGSLRQLD-SKITAKRPLTFNAYYIGECSNELPDTQYDRLMSVKGWGIPVNP 253 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 +++ G+ +YN++ R L YDIDG+V KV+ +Q+ +G AR+PRW I++KF Sbjct: 254 LIKKVYGIKGLSDFYNDILQKRPGLNYDIDGVVLKVNSIPVQEDMGFTARTPRWAIAYKF 313 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 ++ TRLLD++ Q+GRTG +TPVARL+PV +GGA ++NATLHNED I+ L Sbjct: 314 PPEEEITRLLDVEFQVGRTGAVTPVARLDPVYVGGATVSNATLHNEDEIRRL-------- 365 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCPICQSRVVRDLNPKT 449 ++ +GD V+V+RAG+VIP+V +++ R D +P FP+ CP C S + R Sbjct: 366 ---NLMIGDYVIVRRAGDVIPQVAGVVLERREKDKVKPIVFPTECPECGSLIER----VK 418 Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509 G+ VA RC+GGL C AQ E + HFVSR+A +IEG G + ++ S ++ AD Sbjct: 419 GEAVA--RCSGGLVCPAQLRESVLHFVSRNAMDIEGFGDRIVEQLVLSG----KVKSIAD 472 Query: 510 IFTLQRRQQTSTT-------KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +++L S + +LG ++ L +I K R I+L RFI++LGIR V Sbjct: 473 LYSLGENDLASLVLDDGSPERKPRLLGM--ITAKKLKAAIEKSRTIALNRFIYALGIREV 530 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G A +LA ++ + +N+I+ + +D L+++P +G ++A I +F++ P N+ Sbjct: 531 GESTALTLATHF-------ETLNDIMRASVED---LMKLPDIGVVVANHIYDFFKEPHNL 580 Query: 623 CAVEALLKEVSPSI------------GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +E L+ + + S + + V TGTL + R+KA+ + Sbjct: 581 DIIERLVPSADIPLFSAGLTLLPCAQASVQTAQSMPLMGQTYVLTGTLSIMDRNKAKNLL 640 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 LGA VS +S+KT +I G +PGSKL KAQ+LGVK+M E+ F+ LL+++ + Sbjct: 641 QSLGAKVSGSVSKKTYAVIAGADPGSKLVKAQELGVKVMTEDDFIALLKEHGLS 694 >gi|170733380|ref|YP_001765327.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3] gi|254781274|sp|B1JUF5|DNLJ_BURCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169816622|gb|ACA91205.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3] Length = 691 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 260/709 (36%), Positives = 399/709 (56%), Gaps = 54/709 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L R + P+L P+ P ++GGE Sbjct: 20 LRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVT---PDSPTQRVGGEAA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + ED+ F R+ K D + + + E K DG Sbjct: 77 GGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++RYE+G FV AA RGDG +GEDV+ +R I +IP ++ ++P +++VRGEV + K Sbjct: 137 AISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKG 253 DF LN+ A ++ +ANPRNAA+G LR+L+ + IT R L+FF +G+G + Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLDGMPMPDT 255 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +L LG PVN + G++ ++ ++ R +LPYDIDG+VYKV+ Q+ Sbjct: 256 HSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQE 315 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATL Sbjct: 316 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 375 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F P+ Sbjct: 376 HNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTE 424 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 425 CPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQ 478 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + +R PAD+F L + + F + S NL DS+ K ++ +L RF Sbjct: 479 LVELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTTLARF 528 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+ LGIRHVG A+ LAK++ S + I+ + ++ L+ V VG I+A+++ Sbjct: 529 IYGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESLH 578 Query: 614 EFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +F+ N +E L K P K + K +V TGTL + R A+E + Sbjct: 579 QFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEML 638 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 639 EAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|326570074|gb|EGE20120.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC7] Length = 691 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 272/712 (38%), Positives = 401/712 (56%), Gaps = 47/712 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ +I +E+RGEV Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + K F LN E IA G K +ANPRNAA+G LR+LN R L FF + + Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q +Q + LGF + + A + I ++Y + RS LP++IDGLV KV++ +L Sbjct: 254 TTQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN G++ R G + VGD V V RAG+VIPKV +I R DA+P P Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+CQS + + G+ +A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 FF+ ++ ADI+ L ++ + T + G GD SVT + +I K + +L Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFIF+LGIR VG A SLA+ + E+ +II D +L VP +G+I AQ+ Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577 Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I +F++ NI V+AL++ VS S + + V TGTL + R +A++ + Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|308050127|ref|YP_003913693.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799] gi|307632317|gb|ADN76619.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799] Length = 685 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 254/719 (35%), Positives = 397/719 (55%), Gaps = 54/719 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + QA+ + L Q ++ ++ YY P + D+EYD L R A+ P L P+ Sbjct: 10 MSQAKDRIEQLSQLLNDYNHQYYVLDNPSVPDAEYDRLMRELQALEAEHPAL---RQPDS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG V H P LSL+ N E+ F R+ D I + EPK Sbjct: 67 PTQRVGGAPAGQFQSVAHLKPMLSLDNAMNEEEFSAFHQRLADRLGSGD---IQYCAEPK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ Y G AA RGDG +GE+++ +R I ++P R+ P ++EVRGE + Sbjct: 124 LDGIAVSLIYRDGLLERAATRGDGTTGEEITTNVRTIKSVPLRLSGKGYPALLEVRGEAF 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI- 249 + K F A+N + +A G K + NPRNAA+G LR+L+ + IT R L F+ + +G I Sbjct: 184 MPKAGFEAMNAKAMAAGEKTFVNPRNAAAGSLRQLD-SRITANRPLAFYAYAVGVVEGID 242 Query: 250 --FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 A L ++ G PV+ V A + Y+ + R LPY+IDG+V KVD Sbjct: 243 TAMADSHSGQLAQLAQWGLPVSPIVETAAGEAAALDYFRRIGQQRPDLPYEIDGVVIKVD 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q+QLG AR+PRW I+ KF ++ T L D++ Q+GRTG +TPVARLEPV +GG Sbjct: 303 SLAQQEQLGFVARAPRWAIACKFPAQEEMTLLKDVEFQVGRTGAVTPVARLEPVFVGGVT 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I L +++GD V+++RAG+VIP++V ++ R DA+ Sbjct: 363 VSNATLHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVSVVAERRPDDARD 411 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 FPS CP+C S+V R G+ VA RC+GGL C AQ+ E +KHF SR A +++GLG Sbjct: 412 IEFPSACPVCASKVER----FEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDVDGLG 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E + PAD+FTL S +++ + G S NL ++++ R Sbjct: 466 DKLVELMVDRE----LVATPADLFTL------SASRLTMLPRMGTKSAQNLVAALDQART 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF+++LGIR VG A +LA+++ Q + ++A + D +LI V VG++ Sbjct: 516 TTLPRFLYALGIREVGEATAANLARHF-------QTLEALMAADTD---ALIEVDDVGEV 565 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQR 663 +A+ + F++ P N+ ++AL ++ +E ++ + V TGTL ++ R Sbjct: 566 VAKHVYYFFRQPHNLEVIQALTDTEGANVHWPAIEAVAEEAQPLKGQTWVLTGTLSQMGR 625 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +A+ + LGA VS +S+ TD ++ G+ GSKL KA LGV +++E+ + LL QYN Sbjct: 626 SEAKAALEALGAKVSGSVSKNTDTLVAGEKAGSKLTKATDLGVPVLDEDGLVALLAQYN 684 >gi|124302218|gb|ABN05294.1| DNA ligase [Geobacillus sp. g] Length = 670 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 262/708 (37%), Positives = 399/708 (56%), Gaps = 56/708 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +QA + + L + + + YY +P + D+EYD L + AI +P+L S+ P Sbjct: 4 QQAERRAAELRELLHRYGYEYYVLGRPSVPDAEYDRLMQELMAIEEQYPELKTSDSPT-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +IGG + KVTH +P +SL ++ DLR F R+ +++ + E KI Sbjct: 62 -QRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRV-----RQEVGEAAYVCELKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ +R I ++P L L P +E RGE ++ Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLP--LRLKEPVSLEARGEAFMP 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ FV+GL E+ + Sbjct: 174 KASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIES 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L ++ LGF VN R+ ++++ NE R LPY+IDG+V KVD F+ Q+ Sbjct: 234 HSEALDYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQR 293 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T L+ I++ +GRTG++TP A LEPV + G + ATL Sbjct: 294 ELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATL 353 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED+I+ +DIR+GD V++K+AG++IP+VV ++V+ R D PF P+ Sbjct: 354 HNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVMPTH 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C+S +VR L+ + A RC C AQ ERL HF SR A NIEGLG++ + Sbjct: 403 CPECESELVR-LDGEV-----ALRCLNP-KCPAQLRERLIHFASRAAMNIEGLGEKVVTQ 455 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F A + AD++ L + Q ++ G+ S TNL +I + SLER Sbjct: 456 LFN----AGLVHDVADLYRLTKEQLIGLERM------GEKSATNLLAAIEASKQNSLERL 505 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR+VGA+ A+ LA+++ + + + L+ VP +G+ +A +I+ Sbjct: 506 LFGLGIRYVGAKAAQLLAEHFETMERLEKATKE----------ELMAVPEIGEKMAGSII 555 Query: 614 EFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ P + L + P E S K +V TG L + R++A+ Sbjct: 556 AFFSQPEAAELLHELRLYGVNMAYKGPKRA-AEAPADSAFAGKTVVLTGKLASMSRNEAK 614 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 E + +LG V+ +SR TDI+I G++ GSKLEKAQQLG++I +E +FL Sbjct: 615 EEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFL 662 >gi|258514074|ref|YP_003190296.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771] gi|257777779|gb|ACV61673.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771] Length = 677 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 257/709 (36%), Positives = 403/709 (56%), Gaps = 55/709 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +++A K + L +EI H+ YY P+I D+EYD L A+ FPDL P Sbjct: 1 MELKEAGKRVLELRREIEEHNYNYYVMDNPVIGDAEYDRLMLELTALEQQFPDLLSEHSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++GG+ VTH +P LSL ++ ++L+ F R+ ++ N + +E Sbjct: 61 T---QRVGGKPKEGFTTVTHRVPMLSLANSFSEQELKDFDRRVRGALAGEEVN---YVVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE G F A RGDG +GED++ ++ I ++ L +P ++EVRGEV Sbjct: 115 LKIDGLAVSLFYENGLFQRGATRGDGETGEDITENLKTIRSLSLQLKEAVP-VLEVRGEV 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+S F LN A + +ANPRNAA+G LR+L+P +R L+ F++ +G + Sbjct: 174 YMSGEAFRRLNKSREAEDQPLFANPRNAAAGSLRQLDPRITSSRQLSAFIYAVGYYEGVS 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 G E L+ ++ LGFPV+ R+ +++Y + ++ R LP+ IDGLV KVD Sbjct: 234 LSGHEEALRYLQDLGFPVSRYYRKFADIEEVLAYCRDWEARRFELPFAIDGLVIKVDSLE 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG A+SPRW I++KF +QA T++ DI I +GRTG+LTP A L+PV + G+ ++ Sbjct: 294 QQLKLGATAKSPRWSIAYKFPPEQAVTKVKDIIINVGRTGVLTPTALLDPVRLAGSTVSR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED IK +D+++GD V+V++AGE+IP+VV ++ +R PF Sbjct: 354 ATLHNEDIIK-----------EKDVQIGDTVVVQKAGEIIPEVVRVLSEKRSGGEIPFKM 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG--- 487 P +CP C ++VVR AA RCT G+AC +Q E L HFVSR A +I GLG Sbjct: 403 PQYCPDCGAKVVRLEGE------AASRCT-GMACPSQLREGLIHFVSRGAMDIAGLGPAV 455 Query: 488 -KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 Q LD I AD++ L+ + N+ FG SV NL ++ + + Sbjct: 456 ITQLLDTGL--------IHDAADLYNLRYED------LVNLERFGQKSVQNLLQALEQSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 SL R IF+LGIRHVG A++LA+++ S Q N++A ++ L+ +P +G Sbjct: 502 KASLGRLIFALGIRHVGERAAKTLARHFGSLQ-------NLMAAGLEE---LVGIPEIGT 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHK 665 IA +I+ F++ +N+ V+ L++ + + E + + +E K V TGTL+ R Sbjct: 552 KIAGSIITFFEQEQNLSVVDKLVRAGVNIVEKDTEASTAGSLEGKTFVLTGTLRSFTRET 611 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 A++++ LG V+A +S+ TD ++ G+NPGSK +KA +LG+K+++E F Sbjct: 612 AKQFIEGLGGKVTASVSKSTDYVLAGENPGSKYDKAVKLGIKVIDEAYF 660 >gi|332089820|gb|EGI94921.1| DNA ligase, NAD-dependent [Shigella dysenteriae 155-74] Length = 671 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 411/712 (57%), Gaps = 50/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P+ R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPSITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VKGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F+ N + LL E S I + + + S K +V TG+L ++ R A Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 618 KARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|297528690|ref|YP_003669965.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3] gi|297251942|gb|ADI25388.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3] Length = 670 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 263/708 (37%), Positives = 399/708 (56%), Gaps = 56/708 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +QA + + L + + + YY +P + D+EYD L + AI +P+L S+ P Sbjct: 4 QQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPT-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +IGG + KVTH IP +SL ++ DLR F RI +++ + E KI Sbjct: 62 -QRIGGPPLEAFRKVTHRIPMMSLANAFDEGDLRDFDRRI-----RQEVGEAAYVCELKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I ++P L L P +E RGE ++ Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLP--LRLKEPVSLEARGEAFMP 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ FV+GL E+ + Sbjct: 174 KASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIES 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L ++ LGF VN R+ ++++ NE R LPY+IDG+V KVD F+ Q+ Sbjct: 234 HSEALDYLQALGFKVNPERRRCANIDEVIAFINEWHEKRPQLPYEIDGIVIKVDSFAQQR 293 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T L+ I++ +GRTG++TP A LEPV + G + ATL Sbjct: 294 ELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATL 353 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED+I+ +DIR+GD V++K+AG++IP+VV ++V+ R D PF P+ Sbjct: 354 HNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVMPTH 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C+S +VR L+ + A RC C AQ ERL HF SR A NIEGLG++ + Sbjct: 403 CPECESELVR-LDGEV-----ALRCLNP-KCPAQLRERLIHFASRAAMNIEGLGEKVVTQ 455 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F A + AD++ L + Q ++ G+ S TNL +I + SLER Sbjct: 456 LFN----AGLVHDVADLYRLTKEQLIGLERM------GEKSATNLLAAIEASKQNSLERL 505 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR+VGA+ A+ LA+++ + + + L+ VP +G+ +A +I+ Sbjct: 506 LFGLGIRYVGAKAAQLLAEHFETMERLEKATKE----------ELMAVPEIGEKMADSII 555 Query: 614 EFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ P + L + P E S K +V TG L + R++A+ Sbjct: 556 AFFSQPEAAELLHELRLYGVNMAYKGPKRA-AEAPADSAFAGKTVVLTGKLASMSRNEAK 614 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 E + +LG V+ +SR TDI+I G++ GSKLEKAQQLG++I +E +FL Sbjct: 615 EEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFL 662 >gi|296158912|ref|ZP_06841740.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1] gi|295890787|gb|EFG70577.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1] Length = 688 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 262/725 (36%), Positives = 401/725 (55%), Gaps = 57/725 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+ + + + L E+ + YY +P + D+EYD L + ++I PDL Sbjct: 5 PVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLIV 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-- 125 P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 65 ---PDSPTQRVGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPPV 121 Query: 126 -IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPE 183 + + E K DG I++RY G FV A+ RGDG +GE+V+ +R I +IP R+ +P+ Sbjct: 122 PVEYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVPQ 181 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVH 241 +++VRGEV + K DF LN+ A +K +ANPRNAA+G LR+L+ + IT R L+FF + Sbjct: 182 VLDVRGEVLMFKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLD-SKITAQRPLSFFSY 240 Query: 242 GLGKTSEIFAKGQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G+G + + E+L + LG PVN + G++ +++ + R LPYDID Sbjct: 241 GIGVLEGMDMPATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDID 300 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKV+ Q+ LG +R+PR+ ++HKF ++A TRL+ ID+Q+GRTG +TPVARLEP Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEP 360 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ Sbjct: 361 VFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSALLDR 409 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R DA+ F P+ CP+C S + R + A RCTGGL C AQ+ + L HF R A Sbjct: 410 RPDDAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRA 463 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+GLG++ +D + +R PAD+F L + + F + S NL D Sbjct: 464 LDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLD 513 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 S+ K ++ +L RFI++LGIRHVG A+ LAK++ S + + ND Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMEASVEALLEVND------- 566 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVF 654 VG ++A++I +F+ N +E L P R + V + K +V Sbjct: 567 ---VGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGV---LAGKTVVL 620 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL + R +A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ Sbjct: 621 TGTLPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGM 680 Query: 715 LFLLQ 719 LL+ Sbjct: 681 RKLLE 685 >gi|114330949|ref|YP_747171.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91] gi|114307963|gb|ABI59206.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91] Length = 715 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 260/715 (36%), Positives = 397/715 (55%), Gaps = 54/715 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L +L I+ HD YY PII D++YD L R + +P L P+ P ++ Sbjct: 41 ERLKALRSTIALHDFHYYVQDAPIIPDADYDKLFRTLQQLEQQYPHLIT---PDSPTQRV 97 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++TH P LSL + ++ F RI + + + + + +EPK DG Sbjct: 98 GAPPLKVFARLTHQTPMLSLTNAFTEDEAIAFDKRI---REALNVDQVNYAVEPKFDGLA 154 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ Y G A RGDG++GED++ +R IP+IP R+ + + + EVRGEV + K D Sbjct: 155 VSLVYTNGILTNGATRGDGYTGEDITLNLRTIPSIPLRLQTATVTDQFEVRGEVVMLKAD 214 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG--LGKTSEIFAKG 253 F LN++ G K +ANPRNAA+G LR+L+ ++IT R L FF + L + F Sbjct: 215 FEHLNEQQRNKGEKLFANPRNAAAGSLRQLD-SNITAARKLTFFAYDAVLSHKDQPFFSK 273 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E+L ++ F V G+++YY+EM ++R +LPY+IDG+VYKVD + Q+ Sbjct: 274 HSEILDYLKSQQFLVAQQNGTTTGVAGLLTYYHEMGALRLSLPYEIDGVVYKVDNLTQQE 333 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG +R+PR+ I+HKF ++AST LL I+IQ+GRTG LTPVARL PV +GG +TNATL Sbjct: 334 TLGYVSRAPRFAIAHKFPAQEASTELLTIEIQVGRTGALTPVARLAPVFVGGVTVTNATL 393 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED ++ + I +GD V+V+RAG+VIP+VV +I +R AQPF P Sbjct: 394 HNEDEVQ-----------RKQIMIGDTVIVRRAGDVIPEVVAVIPEQRPAHAQPFIMPDH 442 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S+ R G+ V RCTGGL C AQ+ + + HF SR A +I+GLG++ +D Sbjct: 443 CPVCGSKAAR----LPGEAVT--RCTGGLYCPAQRKQAIWHFASRRALDIDGLGEKLIDQ 496 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD++ L + + ++ + S NL +I + +L RF Sbjct: 497 LIDRE----LVHTPADLYKL------NIDTLASLERMAEKSARNLVTAIEHSKKTTLPRF 546 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I++LGIRHVG A++LA N A ++ ++ D L ++P VG I+AQ+I+ Sbjct: 547 IYALGIRHVGEATAKALA-------NQASHLDQLMTL---DIEQLQQIPDVGPIVAQSII 596 Query: 614 EFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +F+ N + LL E+ + + +S + K V TGTL + R +A+ Sbjct: 597 DFFSEAHNREVIRQLLDSGLQWEIPNHGVQQSEQTNSAVSGKTFVLTGTLPTMTRDQAKI 656 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + Q G V+ +S T ++ G +PGSK KA LG+ +++E+Q L LLQ +T Sbjct: 657 KIEQQGGKVTGSVSSATSYVVAGSDPGSKYAKAIGLGISVLDEDQLLSLLQNIST 711 >gi|326562480|gb|EGE12798.1| NAD-dependent DNA ligase [Moraxella catarrhalis 46P47B1] gi|326567201|gb|EGE17321.1| NAD-dependent DNA ligase [Moraxella catarrhalis 12P80B1] gi|326568292|gb|EGE18374.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC8] Length = 691 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 272/712 (38%), Positives = 401/712 (56%), Gaps = 47/712 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMCALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ +I +E+RGEV Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + K F LN E IA G K +ANPRNAA+G LR+LN R L FF + + Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q +Q + LGF + + A + I ++Y + RS LP++IDGLV KV++ +L Sbjct: 254 TTQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN G++ R G + VGD V V RAG+VIPKV +I R DA+P P Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+CQS + + G+ +A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 FF+ ++ ADI+ L ++ + T + G GD SVT + +I K + +L Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFIF+LGIR VG A SLA+ + E+ +II D +L VP +G+I AQ+ Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577 Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I +F++ NI V+AL++ VS S + + V TGTL + R +A++ + Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|71082725|ref|YP_265444.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1062] gi|123775550|sp|Q4FPL3|DNLJ_PELUB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71061838|gb|AAZ20841.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1062] Length = 676 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 259/699 (37%), Positives = 404/699 (57%), Gaps = 53/699 (7%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 H+ YY +KPI+ D E+D LK+ + + L +SE P IG + + + K+ Sbjct: 20 HNKHYYDKNKPIVSDQEFDLLKKDIIDLERKYKFL-KSE--YSPTKSIGFKPSKNFQKIK 76 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 H +P LSL +N EDL+ F +I F KD N+I ++ EPKIDG ++ Y GK Sbjct: 77 HKVPMLSLGNAFNEEDLKNFEKKIINFLSLKDVNTIEYSAEPKIDGISASLIYIDGKLTK 136 Query: 151 AALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 RGDG+ GED++ ++ I IP + N P+ I++RGEV+I NDF + D+ Sbjct: 137 GLSRGDGNEGEDITQNLKTIKDIPLEITKSNFPKEIDIRGEVFIENNDFKKIKDK----- 191 Query: 210 RKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 +ANPRNAASG LR+ N + L F + G ++ K Q L+ ++ GF Sbjct: 192 ---FANPRNAASGSLRQKNSLITAKIPLKFIAYTYGYEKKMNIKNQTSFLENLKLWGFKT 248 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 N ++ ++ + E++ R L +DIDG+VYKV++F LQK+LG A +PRW I+H Sbjct: 249 NPFNKKIIGVKNLMLNHKELEEKRKELAFDIDGIVYKVNDFDLQKRLGFAANAPRWAIAH 308 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 KF+ + + +++I+IQIGRTG LTPVA+++PVNIGG +++NATLHNED ++ Sbjct: 309 KFSANSSISEIMNIEIQIGRTGALTPVAKIKPVNIGGVIVSNATLHNED---------EI 359 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 +R +DIRVGD V V+RAG+VIP VV + + +R +++ F FP CP C S+ ++D N Sbjct: 360 VR--KDIRVGDTVTVERAGDVIPHVVSVDLKKRKQNSKKFIFPLKCPSCGSKTIKDYNET 417 Query: 449 TGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 T + A RC G C +ER+KHFVS+DAFNI+G GK+ ++ F+ + +R+P Sbjct: 418 TKRQDAVRRCASEGFECEKIAIERIKHFVSKDAFNIDGFGKKIVENFWNLK----LVRLP 473 Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 DIF L + KIE + G+G +SV NL SI +++NISLERFI+SLGIRH+G E A Sbjct: 474 QDIFKL------NYNKIEELEGWGKLSVANLRFSIEEKKNISLERFIYSLGIRHIGQENA 527 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + +A++ + NF + + N + SL + +G Q+I +F+ N N+ + Sbjct: 528 KLIARHLKTASNFFR----LSGEKNIE--SLSNIDGIGITQIQSIKKFFLNKTNLKVLSE 581 Query: 628 -----LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 L+K+V N + ++NK + TG L I R +A+ + Q + + ++ Sbjct: 582 LEKNLLIKDVILI------NNNGLLKNKTFMLTGKLNGISRAEAKSLIEQNSGKIISNVN 635 Query: 683 RKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 +K D +I GD P K+ A++ +KI+N+ ++L +L + Sbjct: 636 KKLDYLIAGDKPTLKKINTAKEWNIKIINQTEWLKMLNK 674 >gi|89256066|ref|YP_513428.1| DNA ligase [Francisella tularensis subsp. holarctica LVS] gi|167009870|ref|ZP_02274801.1| DNA ligase [Francisella tularensis subsp. holarctica FSC200] gi|254367402|ref|ZP_04983428.1| DNA ligase [Francisella tularensis subsp. holarctica 257] gi|123401612|sp|Q2A4C4|DNLJ_FRATH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89143897|emb|CAJ79115.1| DNA ligase [Francisella tularensis subsp. holarctica LVS] gi|134253218|gb|EBA52312.1| DNA ligase [Francisella tularensis subsp. holarctica 257] Length = 678 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 268/728 (36%), Positives = 410/728 (56%), Gaps = 65/728 (8%) Query: 6 LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 + P E SI+ A+ EL + L +S Y+ KPII DS+YD L R + Sbjct: 1 MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 + P + N L+++GGE+ + H SL ++++E+LR F +I Sbjct: 61 VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + I EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P L+ Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169 Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236 N PE +EVRGE+ + K FL+LN+ M K +ANPRNAA+G +R L+ + R L Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229 Query: 237 NFFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + +G+G S+ ++ + Q+E++Q ++ GF +++ + A F + Y+++M R+ Sbjct: 230 KLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDGLV+KV+ LQ +G AR P+W I++KF ++ + +L+++ Q+GRTG +TP Sbjct: 290 LAYDIDGLVFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITP 349 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVV 398 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + R DAQ P+ CP+C S+ + ++N + A +RCTGG C AQ ERLKH Sbjct: 399 KSLPQYRKSDAQIVEMPTNCPVCDSK-IENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSR A +I+ LG + ++ A I+ PADI+ L Q T ++ S Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFEQLTGLERM------AAKS 502 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 N+ DSI K + SL RFIF++GI+ +G + +LA ++ S ++F + Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDALANHFGSLESF----------RDAK 552 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650 + LI + +G+IIA IV F+ + NI VE L K +P H N S K Sbjct: 553 FEELIEINYIGEIIANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNES--FTGK 610 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+ + R + + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670 Query: 711 EEQFLFLL 718 E+ LL Sbjct: 671 EDNLKDLL 678 >gi|254489942|ref|ZP_05103137.1| DNA ligase, NAD-dependent [Methylophaga thiooxidans DMS010] gi|224465027|gb|EEF81281.1| DNA ligase, NAD-dependent [Methylophaga thiooxydans DMS010] Length = 673 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 256/709 (36%), Positives = 404/709 (56%), Gaps = 47/709 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++ ++L + I++++ YY P + D+EYD L + P+L ++ P Sbjct: 6 EVQQRAATLRELINHYNYLYYVTDNPEVPDAEYDRLFSELQQLEQTHPELLTADSPT--- 62 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE+ ++ H++P LSL+ +++ E L F R+ R W D I+ EPK+D Sbjct: 63 QRVGGEVLDKFAEIEHAMPMLSLDNVFDQEALTAFDKRV-RDWLNTDQPQIY-AAEPKLD 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 G I+IRYE+G V AA RGDG+ GEDV+A +R I ++P LS NIP I+EVRGE+++ Sbjct: 121 GLAISIRYEQGVLVQAATRGDGNYGEDVTANVRTIKSVPLKLSGDNIPAIVEVRGEIFMP 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K+ F LN + +K + NPRNAA+G LR+L+ TR L + +G+G Sbjct: 181 KDGFERLNQSQLDNNKKVFVNPRNAAAGSLRQLDSKITATRPLEIYCYGIGYIEGAARPA 240 Query: 254 QY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + E + + G ++ +++ Y ++ R +L YDIDG+V KVD +LQ Sbjct: 241 SHTEAMSMIANWGCRISPELKKLEGLEACHRYIEQLGERRDSLAYDIDGVVLKVDNTALQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +R+PRW I++KF ++ T + DI+IQ+GRTG LTPVARL+PV +GG ++NAT Sbjct: 301 ERLGFVSRAPRWAIAYKFPAQEEMTTIEDIEIQVGRTGALTPVARLKPVFVGGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I+ +D+R+GD+V+V+RAG+VIP+VV +I+++R + F P+ Sbjct: 361 LHNEDEIR-----------RKDVRIGDQVIVRRAGDVIPEVVKVILSKRTDTVREFVMPT 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S V R+ A RC+GGL C AQ+ E +KHF SR A +++GLG + ++ Sbjct: 410 QCPVCGSDVEREAGE------AVSRCSGGLFCPAQRKEAIKHFASRKALDVDGLGDKLVE 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +E I+ AD+F L Q ++ G S NL +I + R Sbjct: 464 QMVDAE----LIKDAADLFVLTVEQLAGLERM------GQKSADNLVRAIKASKQTRFPR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG ARSLA ++ ++ A D +L+ + VG I+A I Sbjct: 514 FLYALGIREVGEATARSLAMHF----------ADLDALKAADSEALVEIEDVGPIVAHHI 563 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+Q P N+ + L+ +V S + EK+ S S + K +V TGTL ++ R +A+E + Sbjct: 564 ETFFQQPHNLEVINRLI-DVGVSWPQEEKSHSDSALSGKTIVLTGTLVQMSRSEAKEKLL 622 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA V+ +S+KTD ++ G + GSKL KA L + +++E L L+Q Sbjct: 623 ALGAKVAGSVSKKTDYVVAGADAGSKLTKAASLDISVVDEAMLLEWLKQ 671 >gi|332088205|gb|EGI93327.1| DNA ligase, NAD-dependent [Shigella boydii 5216-82] Length = 671 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 410/712 (57%), Gaps = 50/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +S+ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLKRMGPKSAQNVVNSLEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F+ N + LL E S I + + + S K +V TG+L ++ R A Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 618 KARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|114047080|ref|YP_737630.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7] gi|113888522|gb|ABI42573.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7] Length = 690 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 256/717 (35%), Positives = 407/717 (56%), Gaps = 55/717 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +A++ + A+ + +L Q ++ H+ YY P I DSEYD L +R + +P ++ Sbjct: 18 QAVTPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAAD 77 Query: 70 DPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P ++GG M L+ F ++TH P LSL+ ++ D F R+ + F Sbjct: 78 SPT---QRVGG-MALAKFEQITHLKPMLSLDNAFDEADFSAFHKRV-----SDRVGEVSF 128 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP ++ N PE++EV Sbjct: 129 CCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEV 188 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244 RGE ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG Sbjct: 189 RGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVV 248 Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 TS AK YE LQ+++ G PV++ ++ + + +YY ++ + R+ LP++IDG+V Sbjct: 249 EPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVV 308 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++ + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV + Sbjct: 309 MKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 368 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHN D I+ L + VGD V+++RAG+VIP++V I+ R Sbjct: 369 GGVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPE 417 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA+ +FP CP+C S V R G+ V RC+GGL C AQ+ E +KHF SR A +I Sbjct: 418 DAKAIAFPQHCPVCGSLVER----LEGEAVT--RCSGGLFCEAQRKEAIKHFASRKALDI 471 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + ++ E ++ PAD+F L T ++ G S TNL +I Sbjct: 472 DGMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAQAIE 521 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +L RF+++LGIR VG A +LA ++ S + A + I LI+V Sbjct: 522 AAKTTTLPRFLYALGIREVGEATAANLATHFGSLE--ALRVATI--------EQLIQVED 571 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G+++AQ + F+ P N+ ++AL+ P+I + ++ + V TGTL ++ Sbjct: 572 IGEVVAQHVAHFFAQPHNLEVIDALITAGVNWPTIAAPSAD-EQPLKGQTWVLTGTLNQL 630 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R+ A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 631 NRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 687 >gi|149192011|ref|ZP_01870239.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1] gi|148834147|gb|EDL51156.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1] Length = 667 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 263/713 (36%), Positives = 409/713 (57%), Gaps = 59/713 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +++ L+ L++++ YH YY P I D EYD L + AI PD + P+ Sbjct: 2 SQQRLNELKEQLHYHGVKYYVEDSPEIPDVEYDRLMQELLAIEAEHPDWVTVDSPS---Q 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG S +V H IP LSL+ ++ EDL F RI + D + + E K+DG Sbjct: 59 RVGGLPLDSFTQVKHEIPMLSLDNAFSDEDLDSFNKRICDRVNRTDIGA--YCCEVKLDG 116 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 +++ YE G V AA RGDG +GE+++ +R I IP ++ +IP IEVRGEV++ K Sbjct: 117 LAVSLLYESGVLVQAATRGDGTTGENITENVRTISAIPLKLQGDDIPARIEVRGEVFMPK 176 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAK 252 F LN+ G K + NPRNAA+G LR+L+ TR L+F+ + LG + +E+ A Sbjct: 177 AGFAKLNELAERKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSLGIVEGTELPAS 236 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++ K++ LGFP+ ++ N+ + +Y+ ++ R L Y+IDG+V KVD+ +LQ Sbjct: 237 -HFDRFLKLKSLGFPMGPETKRVNSIEEVKAYHKAIQEKRDELEYEIDGVVIKVDDIALQ 295 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG AR+PRW I++KF ++ T L ++ Q+GRTG +TPVA+LEPV +GG ++NAT Sbjct: 296 EQLGFVARAPRWAIAYKFPAQEEITVLNSVEFQVGRTGAITPVAKLEPVFVGGVTVSNAT 355 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L ++VGD V+++RAG+VIP++V + R DA+ FPS Sbjct: 356 LHNADEIERL-----------GVKVGDSVIIRRAGDVIPQIVSYVPERRPADAKEIVFPS 404 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S + R G+ VA RCTGGL C AQ+ E LKHFVSR A +++GLG++ ++ Sbjct: 405 ECPVCASLIER----IEGEAVA--RCTGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIE 458 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 E + PAD+F L Q T ++ G S N+ +++N + +L R Sbjct: 459 QLVDKE----MVETPADLFKLSVGQLTILERM------GPKSAQNVVNALNVSKETTLAR 508 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F++SLGIR VG A +L+ ++ + + N++ +D LI VP VG+I+A+ I Sbjct: 509 FLYSLGIREVGEATAANLSTHF-------ETLENVMNATHD---QLIEVPDVGEIVAKHI 558 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-------KKLVFTGTLQKIQRHK 665 F+ N +EAL+ + G H V + E+ K +V TG+L ++ R+ Sbjct: 559 RFFFAAESNQKVIEALI-----AAGIHWAAVEAPAEDTPQPLAGKTVVLTGSLSQLNRND 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + LGA V+ +S+KTDI+ G+N GSKL KAQ+L ++I E+ + L+ Sbjct: 614 AKAALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELNIEIRTEDDLIELI 666 >gi|296113927|ref|YP_003627865.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4] gi|295921621|gb|ADG61972.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4] Length = 691 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 271/712 (38%), Positives = 401/712 (56%), Gaps = 47/712 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE+ +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGELLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ +I +E+RGEV Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + K F LN E IA G K +ANPRNAA+G LR+LN R L FF + + Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q +Q + LGF + + A + I ++Y + RS LP++IDGLV KV++ +L Sbjct: 254 TTQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN G++ R G + VGD V V RAG+VIPKV +I R DA+P P Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+CQS + + G+ +A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 FF+ ++ ADI+ L ++ + T + G GD SV + +I K + +L Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVAKMLSAIEKSKQTTLP 527 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFIF+LGIR VG A SLA+ + E+ +II D +L VP +G+I AQ+ Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577 Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I +F++ NI V+AL++ VS S + + V TGTL + R +A++ + Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|324009590|gb|EGB78809.1| DNA ligase, NAD-dependent [Escherichia coli MS 57-2] Length = 671 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 252/715 (35%), Positives = 408/715 (57%), Gaps = 56/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V + ++++Y+E++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A E +I L +VP VG Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++A + F+ N + LL E I + + + S K +V TG+L ++ R Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSR 614 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|326573825|gb|EGE23778.1| NAD-dependent DNA ligase [Moraxella catarrhalis O35E] Length = 691 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 272/712 (38%), Positives = 401/712 (56%), Gaps = 47/712 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q ++ +L + + H+ YY P I D EYD L+R + P+L + P+ P Sbjct: 21 DQIIAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQ---PDSP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +N +GGE +V H +P LSL ++N +DL F+ R D + +E K+ Sbjct: 78 INTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRANERLGIAIDE---YEMELKL 134 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192 DG ++++Y+ G+F A RGDG GED++ +R I +P L+ +I +E+RGEV Sbjct: 135 DGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLT-GCEQIKQLEIRGEVL 193 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + K F LN E IA G K +ANPRNAA+G LR+LN R L FF + + Sbjct: 194 MPKAGFEKLNRESIAQGIKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVNDGLPDGI 253 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q +Q + LGF + + A + I ++Y + RS LP++IDGLV KV++ +L Sbjct: 254 TTQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEIDGLVIKVNDLNL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R PRW ++KF + TRL+D++ Q+GRTG LTPV RLEP+ +GG ++N Sbjct: 313 QARLGFLSREPRWATAYKFPAETVPTRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNV 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN G++ R G + VGD V V RAG+VIPKV +I R DA+P P Sbjct: 373 TLHN---------FGEIERLG--VMVGDVVNVHRAGDVIPKVSGVIGELRPTDAKPILLP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+CQS + + G+ +A RCTGGL C+AQQ E L HFVSR A +I+GLG Q L Sbjct: 422 TVCPVCQSPI----SLPEGEALA--RCTGGLYCAAQQQEALIHFVSRRAMDIDGLGSQWL 475 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 FF+ ++ ADI+ L ++ + T + G GD SVT + +I K + +L Sbjct: 476 IKFFEMG----LVQTVADIYKLHKQAEYLIT----LEGMGDKSVTKMLSAIEKSKQTTLP 527 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFIF+LGIR VG A SLA+ + E+ +II D +L VP +G+I AQ+ Sbjct: 528 RFIFALGIRGVGESTALSLAQQF-------GELQSII---EADLQALQAVPDIGEITAQS 577 Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I +F++ NI V+AL++ VS S + + V TGTL + R +A++ + Sbjct: 578 IYDFFRASHNIEVVQALIEAGVSWQAMDTPDKSSLPLTGETWVVTGTLGSMGRDEAKDKL 637 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S KT ++ G+ GSKLEKAQ+LGV ++ E++FL L+ YN Sbjct: 638 IALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVVLEDEFLALIALYN 689 >gi|166216288|sp|Q0HWD2|DNLJ_SHESR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 688 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 256/717 (35%), Positives = 407/717 (56%), Gaps = 55/717 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +A++ + A+ + +L Q ++ H+ YY P I DSEYD L +R + +P ++ Sbjct: 16 QAVTPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAAD 75 Query: 70 DPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P ++GG M L+ F ++TH P LSL+ ++ D F R+ + F Sbjct: 76 SPT---QRVGG-MALAKFEQITHLKPMLSLDNAFDEADFSAFHKRV-----SDRVGEVSF 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP ++ N PE++EV Sbjct: 127 CCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEV 186 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244 RGE ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG Sbjct: 187 RGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVV 246 Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 TS AK YE LQ+++ G PV++ ++ + + +YY ++ + R+ LP++IDG+V Sbjct: 247 EPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVV 306 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++ + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV + Sbjct: 307 MKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 366 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHN D I+ L + VGD V+++RAG+VIP++V I+ R Sbjct: 367 GGVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPE 415 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA+ +FP CP+C S V R G+ V RC+GGL C AQ+ E +KHF SR A +I Sbjct: 416 DAKAIAFPQHCPVCGSLVER----LEGEAVT--RCSGGLFCEAQRKEAIKHFASRKALDI 469 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + ++ E ++ PAD+F L T ++ G S TNL +I Sbjct: 470 DGMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAQAIE 519 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +L RF+++LGIR VG A +LA ++ S + A + I LI+V Sbjct: 520 AAKTTTLPRFLYALGIREVGEATAANLATHFGSLE--ALRVATI--------EQLIQVED 569 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G+++AQ + F+ P N+ ++AL+ P+I + ++ + V TGTL ++ Sbjct: 570 IGEVVAQHVAHFFAQPHNLEVIDALITAGVNWPTIAAPSAD-EQPLKGQTWVLTGTLNQL 628 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R+ A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 629 NRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 685 >gi|166216287|sp|Q0HK31|DNLJ_SHESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 688 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 257/717 (35%), Positives = 406/717 (56%), Gaps = 55/717 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +A++ A+ + +L Q ++ H+ YY P I DSEYD L +R + +P ++ Sbjct: 16 QAVTPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAAD 75 Query: 70 DPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P ++GG M L+ F ++TH P LSL+ ++ D F R+ + F Sbjct: 76 SPT---QRVGG-MALAKFEQITHLKPMLSLDNAFDEADFSAFHKRV-----SDRVGEVSF 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP ++ N PE++EV Sbjct: 127 CCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEV 186 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244 RGE ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG Sbjct: 187 RGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVV 246 Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 TS AK YE LQ+++ G PV++ ++ + + +YY ++ + RS LP++IDG+V Sbjct: 247 EPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRSYLPFEIDGVV 306 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++ + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV + Sbjct: 307 MKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 366 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHN D I+ L + VGD V+++RAG+VIP++V I+ R Sbjct: 367 GGVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPE 415 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA+ +FP CP+C S V R G+ V RC+GGL C AQ+ E +KHF SR A +I Sbjct: 416 DAKAIAFPQHCPVCGSLVER----LEGEAVT--RCSGGLFCEAQRKEAIKHFASRKALDI 469 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + ++ E ++ PAD+F L T ++ G S TNL +I Sbjct: 470 DGMGDKIVEQLIDKE----LVQSPADLFKLPASMMTMLDRM------GMKSATNLAQAIE 519 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +L RF+++LGIR VG A +LA ++ S + A + I LI+V Sbjct: 520 AAKTTTLPRFLYALGIREVGEATASNLATHFGSLE--ALRVATI--------EQLIQVED 569 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G+++AQ + F+ P N+ ++AL+ P+I + ++ + V TGTL ++ Sbjct: 570 IGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPTIAAPSAD-EQPLKGQTWVLTGTLNQL 628 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R+ A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 629 NRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 685 >gi|54308062|ref|YP_129082.1| NAD-dependent DNA ligase LigA [Photobacterium profundum SS9] gi|81615410|sp|Q6LTU5|DNLJ_PHOPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|46912488|emb|CAG19280.1| putative NAD-dependent DNA ligase [Photobacterium profundum SS9] Length = 676 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 253/704 (35%), Positives = 410/704 (58%), Gaps = 49/704 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +++L +L ++++YH YY P I D+EYD + ++ A+ P+L + P+ + Sbjct: 11 QQQLDTLREQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEAEHPELMSVDSPS---QR 67 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG S +V H +P LSL+ +N E+L F R+ + + + EPK+DG Sbjct: 68 VGGTPLDSFTQVKHELPMLSLDNAFNDEELNAFEKRLLD--RLITAGHVSYCCEPKLDGL 125 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ YE G V AA RGDG +GE+++ +R I +IP ++ P +EVRGEV++ K Sbjct: 126 AVSLMYENGVLVQAASRGDGATGENITTNVRTIRSIPLKLQGEGWPVRLEVRGEVFMPKK 185 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254 F LN + G K +ANPRNAA+G LR+L+ TR L+F+ + +G + A+ Q Sbjct: 186 GFDELNARALKKGDKAFANPRNAAAGSLRQLDSKIAATRPLSFYAYSVGVVEGMDLAESQ 245 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE L +++ G P+ +RQ T + +++YY ++ R +L Y+IDG+V KVD+ Q+Q Sbjct: 246 YERLVQLKGWGIPMCPEIRQLKTINDVIAYYQDIGERRQSLAYEIDGVVIKVDDVETQEQ 305 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEP+ +GG ++NATLH Sbjct: 306 LGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLH 365 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D +V R G + +GD V+++RAG+VIP++V ++ + R +AQ +FP C Sbjct: 366 NAD---------EVARLG--VMIGDTVIIRRAGDVIPQIVSVVESRRPDNAQAITFPITC 414 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G G++ ++ Sbjct: 415 PVCESNVER----VEGEAVA--RCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQL 468 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG-FGDVSVTNLYDSINKRRNISLERF 553 E + PA +F L + I +L G S L DS+ + +L RF Sbjct: 469 VDRE----MVTTPAGLFKL-------SAGIVTVLDRMGPKSAQKLVDSLANSKETTLPRF 517 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+SLGIR VG A +LA ++ + + I A + + L+ VP VG+++A ++ Sbjct: 518 IYSLGIREVGEATAANLANHF-------ETLEAITAASKE---QLLVVPDVGEVVANNLL 567 Query: 614 EFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F++ N+ VE L+ P+I + E+ V ++ K +V TG+L ++ R A+ + Sbjct: 568 NFFREAHNMDVVEDLIAVGIHWPAIDKPEEGVELPLDGKVVVLTGSLSQLTRSDAKAALQ 627 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 LGA V+ +S KTD+++ G+ GSKL KAQ+L ++I +E+ + Sbjct: 628 ALGAKVTGSVSSKTDLLVAGEAAGSKLTKAQELDIEIWDEQALV 671 >gi|116690045|ref|YP_835668.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424] gi|166215562|sp|A0K8E8|DNLJ_BURCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215593|sp|Q1BHI7|DNLJ_BURCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116648134|gb|ABK08775.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424] Length = 691 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 260/709 (36%), Positives = 399/709 (56%), Gaps = 54/709 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L R + P+L P+ P ++GGE Sbjct: 20 LRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVT---PDSPTQRVGGEAA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + ED+ F R+ K D + + + E K DG Sbjct: 77 GGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++RYE+G FV AA RGDG +GEDV+ +R I +IP ++ ++P +++VRGEV + K Sbjct: 137 AISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKG 253 DF LN+ A ++ +ANPRNAA+G LR+L+ + IT R L+FF +G+G + Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLDGMPMPDT 255 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +L LG PVN + G++ ++ ++ R +LPYDIDG+VYKV+ Q+ Sbjct: 256 HSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQE 315 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATL Sbjct: 316 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 375 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F P+ Sbjct: 376 HNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTE 424 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 425 CPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQ 478 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + +R PAD+F L + + F + S NL DS+ K ++ +L RF Sbjct: 479 LVELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTTLARF 528 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+ LGIRHVG A+ LAK++ S + I+ + ++ L+ V VG I+A+++ Sbjct: 529 IYGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESLH 578 Query: 614 EFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +F+ N +E L K P K + K +V TGTL + R A+E + Sbjct: 579 QFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEML 638 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 639 EAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|261418603|ref|YP_003252285.1| NAD-dependent DNA ligase LigA [Geobacillus sp. Y412MC61] gi|319765418|ref|YP_004130919.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52] gi|261375060|gb|ACX77803.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC61] gi|317110284|gb|ADU92776.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52] Length = 670 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 261/708 (36%), Positives = 399/708 (56%), Gaps = 56/708 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +QA + + L + + + YY +P + D+EYD L + AI +P+L S+ P Sbjct: 4 QQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTSDSPT-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +IGG + KVTH +P +SL ++ DLR F R+ +++ + E KI Sbjct: 62 -QRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRV-----RQEVGEAAYVCELKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ +R I ++P L L P +E RGE ++ Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLP--LRLKEPVSLEARGEAFMP 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ +V+GL E+ + Sbjct: 174 KASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLYVYGLANAEELGIES 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L ++ LGF VN R+ ++++ NE R LPY+IDG+V KVD F+ Q+ Sbjct: 234 HSEALHYLQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQR 293 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T L+ I++ +GRTG++TP A LEPV + G + ATL Sbjct: 294 ELGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATL 353 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED+I+ +DIR+GD V++K+AG++IP+VV ++V+ R D PF P+ Sbjct: 354 HNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVMPTH 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C+S +VR L+ + A RC C AQ ERL HF SR A NIEGLG++ + Sbjct: 403 CPECESELVR-LDGEV-----ALRCLNP-KCPAQLRERLIHFASRAAMNIEGLGEKVVTQ 455 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F A + AD++ L + Q ++ G+ S TNL +I + SLER Sbjct: 456 LFN----AGLVHDVADLYRLTKEQLIGLERM------GEKSATNLLAAIEASKQNSLERL 505 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR+VGA+ A+ LA+++ + + + L+ VP +G+ +A +I+ Sbjct: 506 LFGLGIRYVGAKAAQLLAEHFETMERLEKATKE----------ELMAVPEIGEKMADSII 555 Query: 614 EFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ P + L + P E S K +V TG L + R++A+ Sbjct: 556 AFFSQPEAAELLHELRLYGVNMAYKGPKRA-AEAPADSAFAGKTVVLTGKLASMSRNEAK 614 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 E + +LG V+ +SR TDI+I G++ GSKLEKAQQLG++I +E +FL Sbjct: 615 EEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESRFL 662 >gi|325982988|ref|YP_004295390.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212] gi|325532507|gb|ADZ27228.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212] Length = 677 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 260/717 (36%), Positives = 402/717 (56%), Gaps = 53/717 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 IE+ R + L EI H+ YY P I D+EYD L R I +P L ++ P Sbjct: 4 GIEKIRHRIQDLRAEIELHNYRYYVLDTPTIPDAEYDRLLRELQHIEQDYPQLITADSPT 63 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++G + +V H P LSL ++ ++ F R+ + +++ + +EP Sbjct: 64 ---QRVGAAPLKAFSQVVHRRPMLSLSNAFDDAEVEAFDRRV---CEGLAVDNVEYAVEP 117 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEV 191 K DG +++ YE G F A RGDG++GE+++ +R I +IP L LN P +EVRGEV Sbjct: 118 KFDGLAVSLCYENGIFKTGATRGDGYTGENITLNLRTIRSIPLSLPVLNPPSWLEVRGEV 177 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 + + DFLALN A G K +ANPRNAA+G LR+L+P TR L FF +G+G+ + Sbjct: 178 LMLRADFLALNQRQSAKGEKEFANPRNAAAGSLRQLDPGITATRRLTFFAYGVGEYQDCH 237 Query: 251 A--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ + L FP+ +++YY ++ R LPYDIDG+VYKV+ Sbjct: 238 MPLDKHSHVMAYLASLHFPIAKEGGVVKGLQELLAYYQTIEVQRVRLPYDIDGVVYKVNS 297 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q++LG +R+PR+ ++HKF ++A T+L I+IQ+GRTG LTPVARL+PV +GG + Sbjct: 298 LAQQERLGFVSRAPRFALAHKFPAQEAITQLSGIEIQVGRTGALTPVARLKPVFVGGVTV 357 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHN D I+ +D+R+GD V+V+RAG+VIP++V +I+ +R D Q F Sbjct: 358 TNATLHNADEIE-----------RKDVRIGDTVIVRRAGDVIPEIVSVILEKRPVDTQVF 406 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C ++ VR ++ A RCTGGL C AQ+ + + HF SR A +IEGLG Sbjct: 407 VMPEHCPVCGAKAVRLVDE------AVSRCTGGLFCPAQRKQAILHFASRRAMDIEGLGD 460 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ D A IR PAD++ L + ++ + S N+ +I K ++ Sbjct: 461 KLVEQMV---DRAI-IRTPADLYKL------GLGALADLERMAEKSAGNILRAIEKSKHT 510 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGIR+VG A+ LA + S ++ +I ++ L ++P VG ++ Sbjct: 511 TLARFIYALGIRNVGEATAKDLAAHCGS-------LDRLIEAGSE---RLQQIPDVGPVV 560 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIENKKLVFTGTLQKIQR 663 AQ+I +F+ N +E L+ HE + ++ K V TGTL + R Sbjct: 561 AQSIADFFAEAHNREVIEQ-LRACGVYWNEHEGISVLAGEARPLQGKTFVLTGTLPIMSR 619 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A+E + LG VS +S+KTD ++VG +PGSK +KA LG+ +++E L LLQ+ Sbjct: 620 EEAKEKIELLGGKVSGSVSKKTDYVVVGADPGSKYDKALSLGIAVLDEAGLLELLQE 676 >gi|113969850|ref|YP_733643.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4] gi|113884534|gb|ABI38586.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4] Length = 690 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 257/717 (35%), Positives = 406/717 (56%), Gaps = 55/717 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +A++ A+ + +L Q ++ H+ YY P I DSEYD L +R + +P ++ Sbjct: 18 QAVTPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAAD 77 Query: 70 DPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P ++GG M L+ F ++TH P LSL+ ++ D F R+ + F Sbjct: 78 SPT---QRVGG-MALAKFEQITHLKPMLSLDNAFDEADFSAFHKRV-----SDRVGEVSF 128 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP ++ N PE++EV Sbjct: 129 CCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEV 188 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244 RGE ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG Sbjct: 189 RGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVV 248 Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 TS AK YE LQ+++ G PV++ ++ + + +YY ++ + RS LP++IDG+V Sbjct: 249 EPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRSYLPFEIDGVV 308 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++ + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV + Sbjct: 309 MKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 368 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHN D I+ L + VGD V+++RAG+VIP++V I+ R Sbjct: 369 GGVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPE 417 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA+ +FP CP+C S V R G+ V RC+GGL C AQ+ E +KHF SR A +I Sbjct: 418 DAKAIAFPQHCPVCGSLVER----LEGEAVT--RCSGGLFCEAQRKEAIKHFASRKALDI 471 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + ++ E ++ PAD+F L T ++ G S TNL +I Sbjct: 472 DGMGDKIVEQLIDKE----LVQSPADLFKLPASMMTMLDRM------GMKSATNLAQAIE 521 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +L RF+++LGIR VG A +LA ++ S + A + I LI+V Sbjct: 522 AAKTTTLPRFLYALGIREVGEATASNLATHFGSLE--ALRVATI--------EQLIQVED 571 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G+++AQ + F+ P N+ ++AL+ P+I + ++ + V TGTL ++ Sbjct: 572 IGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPTIAAPSAD-EQPLKGQTWVLTGTLNQL 630 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R+ A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 631 NRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 687 >gi|156502078|ref|YP_001428143.1| DNA ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954221|ref|ZP_06558842.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1] gi|295312341|ref|ZP_06803126.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1] gi|166214810|sp|A7NB34|DNLJ_FRATF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|156252681|gb|ABU61187.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. holarctica FTNF002-00] Length = 678 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 267/728 (36%), Positives = 410/728 (56%), Gaps = 65/728 (8%) Query: 6 LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 + P E SI+ A+ EL + L +S Y+ KPII DS+YD L R + Sbjct: 1 MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 + P + N L+++GGE+ + H SL ++++E+LR F +I Sbjct: 61 VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + I EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P L+ Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169 Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236 N PE +EVRGE+ + K FL+LN+ M K +ANPRNAA+G +R L+ + R L Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229 Query: 237 NFFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + +G+G S+ ++ + Q+E++Q ++ GF +++ + A F + Y+++M R+ Sbjct: 230 KLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDGLV+K++ LQ +G AR P+W I++KF ++ + +L+++ Q+GRTG +TP Sbjct: 290 LAYDIDGLVFKINNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITP 349 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVV 398 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + R DAQ P+ CP+C S+ + ++N + A +RCTGG C AQ ERLKH Sbjct: 399 KSLPQYRKSDAQIVEMPTNCPVCDSK-IENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSR A +I+ LG + ++ A I+ PADI+ L Q T ++ S Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFEQLTGLERM------AAKS 502 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 N+ DSI K + SL RFIF++GI+ +G + +LA ++ S ++F + Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDALANHFGSLESF----------RDAK 552 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650 + LI + +G+IIA IV F+ + NI VE L K +P H N S K Sbjct: 553 FEELIEINYIGEIIANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNES--FTGK 610 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+ + R + + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670 Query: 711 EEQFLFLL 718 E+ LL Sbjct: 671 EDNLKDLL 678 >gi|71907364|ref|YP_284951.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB] gi|123746888|sp|Q47FA0|DNLJ_DECAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71846985|gb|AAZ46481.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB] Length = 683 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 270/722 (37%), Positives = 393/722 (54%), Gaps = 62/722 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E K + E+ H YY P I D+EYD L R + +P+L ++ P Sbjct: 5 EDVAKRAAWYRSELERHSYAYYVLDAPTIPDTEYDKLFRELQELEQQYPELLTADSPT-- 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +++GG H +P LSL + E++ F RI + ++ + +EPK Sbjct: 63 -HRVGGVPLKEFPPRQHGVPMLSLNNAFAPEEVEAFDKRIRDGLETI--AAVDYAVEPKF 119 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG I++ YE G F A RGDG +GE+V+ +R + IP R+ P +IE+RGEV + Sbjct: 120 DGLAISLTYENGVFTCGATRGDGVTGEEVTPNLRTLRCIPLRLRGEGWPALIEIRGEVLM 179 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251 K DF LN G K +ANPRNAA+G LR+L+ + IT R L+FF +G+G ++ A Sbjct: 180 FKADFAELNARQRERGDKEFANPRNAAAGSLRQLD-SKITAGRPLSFFAYGVGAGADALA 238 Query: 252 -KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K EM+ + GFPV R G++ Y+ E+ R LPYDIDG+VYKV+ Sbjct: 239 VKTHGEMMGLLAAWGFPVAEERRVVQGVRGLLGYFVEIGVKRPGLPYDIDGVVYKVNRLD 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q QLG +R+PR+ I+HKF ++A T +L ID+Q+GRTG +TPVARL+PV +GG +TN Sbjct: 299 WQAQLGFVSRAPRFAIAHKFPAEEALTEVLGIDVQVGRTGAITPVARLKPVFVGGVTVTN 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER--------H 422 ATLHNED ++ +D+R+GD V+V+RAG+VIP+VV I+ +R Sbjct: 359 ATLHNEDEVR-----------RKDVRLGDTVIVRRAGDVIPEVVAIVPEKRPMRDLFGSE 407 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P PF P+ CP C S VV+ G A RCTGGL C AQ+ + L HF +R A + Sbjct: 408 PLNPPFELPATCPECGSAVVK------GDDEAIARCTGGLYCPAQRKQALWHFAARRAMD 461 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLY 539 IEGLG + +D A + PAD++ L +E + G G+ S NL Sbjct: 462 IEGLGDKLVDQLVD----AGLVHSPADLYGL---------TVETLAGLERMGEKSAQNLV 508 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I+K R +L RFIF LGIR+VG AR LAK++ + A D +L Sbjct: 509 AAIDKSRQTTLARFIFGLGIRNVGEATARDLAKHF----------GGLDALLAADSAALQ 558 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTL 658 VP VG ++A+++ F+ N ++ L + VS G + + K LV TGTL Sbjct: 559 MVPDVGPVVAESLAAFFAEAHNREVIDGLRRAGVSWPEGEPAQAGPQLLAGKTLVLTGTL 618 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++R +A+ V G V+ +S+KTD ++ G+ GSKLEKAQ+LGV +++E + + LL Sbjct: 619 PTLKRDEAKALVEAAGGKVAGSVSKKTDYVVAGEEAGSKLEKAQELGVPVIDEAELMKLL 678 Query: 719 QQ 720 + Sbjct: 679 AK 680 >gi|120554094|ref|YP_958445.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8] gi|166215819|sp|A1TZT9|DNLJ_MARAV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120323943|gb|ABM18258.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8] Length = 678 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 262/715 (36%), Positives = 402/715 (56%), Gaps = 52/715 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E RK + SL + H+ YY P I D+EYD L R + P+LA +ED P Sbjct: 6 ETIRKRVDSLRATLEDHNYYYYVQDDPRIPDAEYDRLFRELQKLEAEHPELA-TED--SP 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G S +V H +P LSL+ ++ ++LR F R+ D +I + EPK+ Sbjct: 63 TRRVGSSAETSFEEVIHRLPMLSLDNAFSEDELRDFDRRVRDRLGA--DGAIEYVCEPKL 120 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG +++ YE G AA RGDG++GED++A IR IP++P ++ P+++EVRGEVY+ Sbjct: 121 DGLAVSLHYENGTLTRAATRGDGYTGEDITANIRTIPSVPLKLRGSGYPDLVEVRGEVYM 180 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE-IFA 251 + F LN+ + G K + NPRNAA+G LR+ T R L + + T E + Sbjct: 181 PRAGFEKLNERLAEQGEKTFVNPRNAAAGSLRQKKSTVTARRPLELCAYSMAVTDESVLP 240 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + ++ LQ +R GF +N +R+A + YNE+ + R +LPY+IDG+V+KV+ L Sbjct: 241 ETHWDSLQLVRDWGFRINPEMRKAEGVEACLDAYNELMAKRDSLPYEIDGIVFKVNRLDL 300 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I+HKF ++ T + D++ Q+GRTG +TPVARL+PV +GG ++NA Sbjct: 301 QQELGFVSRAPRWAIAHKFPAQEELTIIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNA 360 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L D+ +GD V ++RAG+VIP+VV ++ +R +A P Sbjct: 361 TLHNMDEIRRL-----------DVHIGDTVFIRRAGDVIPQVVKVVPEKRPAEAPMVEMP 409 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S +V+ G+ VA RC+GGL C AQ+ E ++H+ SR A +IEGLG + + Sbjct: 410 EHCPVCGSDIVQ----IEGEAVA--RCSGGLYCPAQRKEAIRHYASRKAMDIEGLGDRLI 463 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + AD++ L + Q S ++ GD S NL +I++ R L Sbjct: 464 EVLVDE----GMVSTVADLYRLTKFQIASLERM------GDKSAANLIAAIDRSREPVLW 513 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+++LGIR VG A+ LA ++ + A + D +L VP VG I+A Sbjct: 514 RFLYALGIREVGEATAKGLAAHF----------GTLEAISAADEETLQTVPDVGPIVAGH 563 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE----NKKLVFTGTLQKIQRHKAQ 667 I F+ P N + A LKE + E+ V S E + V TGTL + R +A+ Sbjct: 564 IRSFFDQPHNQETL-AALKEA--GVTWQEEQVLSADEQPLNGQTWVLTGTLSGMTRDQAK 620 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 E + QLGA V+ +S+KT ++ G+ GSKL KA+QLGV +++EE LL+++ Sbjct: 621 EKLEQLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLGVPVLDEEGLANLLREHG 675 >gi|107028796|ref|YP_625891.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054] gi|105897960|gb|ABF80918.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054] Length = 746 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 260/709 (36%), Positives = 399/709 (56%), Gaps = 54/709 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L R + P+L P+ P ++GGE Sbjct: 75 LRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELV---TPDSPTQRVGGEAA 131 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + ED+ F R+ K D + + + E K DG Sbjct: 132 GGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACELKFDGL 191 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++RYE+G FV AA RGDG +GEDV+ +R I +IP ++ ++P +++VRGEV + K Sbjct: 192 AISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEVLMFKR 251 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKG 253 DF LN+ A ++ +ANPRNAA+G LR+L+ + IT R L+FF +G+G + Sbjct: 252 DFARLNERQRAAEQREFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLDGMPMPDT 310 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +L LG PVN + G++ ++ ++ R +LPYDIDG+VYKV+ Q+ Sbjct: 311 HSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQE 370 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATL Sbjct: 371 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 430 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F P+ Sbjct: 431 HNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTE 479 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 480 CPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQ 533 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + +R PAD+F L + + F + S NL DS+ K ++ +L RF Sbjct: 534 LVELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLIDSLEKAKHTTLARF 583 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+ LGIRHVG A+ LAK++ S + I+ + ++ L+ V VG I+A+++ Sbjct: 584 IYGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESLH 633 Query: 614 EFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +F+ N +E L K P K + K +V TGTL + R A+E + Sbjct: 634 QFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEML 693 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 694 EAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 742 >gi|308187689|ref|YP_003931820.1| DNA ligase [Pantoea vagans C9-1] gi|308058199|gb|ADO10371.1| DNA ligase [Pantoea vagans C9-1] Length = 672 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 251/717 (35%), Positives = 403/717 (56%), Gaps = 59/717 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + ++ L + +H+ Y+ P + D+EYD L R + PDL P+ Sbjct: 1 MKSVQDHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +V H +P LSL+ ++ F R+ + DD I + E K Sbjct: 58 PTQRVGAAPLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKSSDD--ITYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++A +R I IP R+ NIP +EVRGE++ Sbjct: 116 LDGAAVSLMYENGLLVRAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEIF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 +++ F LN+E K +ANPRNAA+G LR+L+P R L FF +G G + E+ Sbjct: 176 MTQRGFEKLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 LQ+ + G PV++ ++ + +++Y +++ R L +DIDG+V KVD Sbjct: 236 -PHSHMGRLQQFKAWGLPVSDRIKLVHNAEEALAFYRDIEQQRPNLGFDIDGVVIKVDSQ 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG AR+PRW I+ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 ALQEQLGFVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GDRV+++RAG+VIP+VV++++ ER + + Sbjct: 355 NATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ V RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPAHCPVCGSEVER----VEGESVT--RCTGGLICGAQRKEALKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ D++ K ++ + Sbjct: 458 IIDQLVEKE----YVDTPADLFRL------TAGKLTGLDRMGPKSAQNIVDALEKAKSTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF+++LGIR VG A +LA ++ Q + D +LI VP VG ++A Sbjct: 508 LARFLYALGIREVGEATAANLANHFGELQKVM----------DADLEALIAVPDVGKVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKI 661 + F + N ++++++ IG H + + S K +V TG+L ++ Sbjct: 558 AHVRNFMEEESN----REVIRQLTDDIGIHWPQVVVVKAEEIDSPFAGKTVVLTGSLSQM 613 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 614 NRDDAKAQLIALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670 >gi|284006788|emb|CBA72055.1| DNA ligase [Arsenophonus nasoniae] Length = 670 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 256/716 (35%), Positives = 410/716 (57%), Gaps = 54/716 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + L+ L+Q++ +H+ Y+ P I D+EYD L + + P+ ++ P Sbjct: 1 MKEQQNYLARLKQQLRHHEYLYHVLDTPEIPDAEYDRLMQELKKLEAEHPEWITADSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H IP LSL+ +++ E F R++ + K+++ + F E K Sbjct: 60 --QRVGAAPLTAFEQVRHEIPMLSLDNVFDEESYLAFDKRVHD--RLKNNSQLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++A IR I IP R+ NIPE IE+RGEV+ Sbjct: 116 LDGLAVSLLYEQGELVQAATRGDGTTGENITANIRTIRAIPLRLTGDNIPERIEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 ++ F LN+E K +ANPRNAA+G LR+L+P R L FF +G G + A Sbjct: 176 MTHRGFEKLNEEARRNDGKIFANPRNAAAGSLRQLDPRITAKRPLAFFCYGFG----LLA 231 Query: 252 KGQ-----YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 GQ Y+ L + + G PV++ + +++YY++++ R L +DIDG+V KV Sbjct: 232 GGQLPASHYQCLMQFKKWGLPVSDKIALCQNSQQVLAYYHQIEHARLGLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D LQ++LG AR+PRW + KF ++ T L D++ Q+GRTG +TPVARL PV + G Sbjct: 292 DPLQLQEELGFVARAPRWATAFKFPAQEQITLLHDVEFQVGRTGAITPVARLAPVLVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHN D I+ L +R+GD V+++RAG+VIP++V+++ + R D++ Sbjct: 352 IVSNATLHNADEIERL-----------GVRIGDTVVIRRAGDVIPQIVNVLTDRRPIDSR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP CP+C S + R G+ V RCTGGL C+AQ+ LKHFVSR A +I+G+ Sbjct: 401 EIRFPIHCPVCGSAIER----IEGEAVI--RCTGGLICAAQRKGALKHFVSRRAMDIDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D E + AD++ L + + + G S NL ++++K + Sbjct: 455 GDKIIDQLVAKE----YVTTAADLYRL------NLDILARLERMGPKSAQNLINALDKSK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG A +LA +Y + + D SL +V VG+ Sbjct: 505 QTTLARFIYALGIREVGEATASNLAAHYTTLTSLMAA----------DIESLKKVQDVGE 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHK 665 I+A+ IV F+ N V L+ E+ S R K S K +V TGTL ++ R + Sbjct: 555 IVAKHIVNFFHEQHNRDVVNQLVNEIGISWPRMPAKKTDSPFTGKTIVLTGTLNRLTRDE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 ++ + LGA V+ +S+KTD++I G+ GSKL KA +LG+KI+NE++ + LL+ + Sbjct: 615 LKDKLILLGAKVTGSVSKKTDLVIAGEAAGSKLTKANELGIKIINEDELIALLEDH 670 >gi|16761347|ref|NP_456964.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|81513487|sp|Q8Z4W4|DNLJ_SALTI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|25294013|pir||AI0809 DNA ligase (NAD) (EC 6.5.1.2) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503646|emb|CAD07659.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi] Length = 671 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 252/716 (35%), Positives = 407/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P ILD+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQTGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INAQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|148658591|ref|YP_001278796.1| DNA ligase [Roseiflexus sp. RS-1] gi|166216236|sp|A5V1U3|DNLJ_ROSS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148570701|gb|ABQ92846.1| DNA ligase, NAD-dependent [Roseiflexus sp. RS-1] Length = 726 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 267/727 (36%), Positives = 389/727 (53%), Gaps = 64/727 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + +L ++I YH+ YY +P+I D+EYDAL R A+ A P+L P+ P ++ Sbjct: 8 RRVEALREQIRYHNYRYYVLDEPVISDAEYDALMRELRALEAAHPELV---TPDSPTQRV 64 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G KV H +P LSL + ++R + R+ R +D + F +EPKIDG Sbjct: 65 GAPPGEQFAKVQHVVPMLSLANASDEAEVRAWYDRVVRLL--GNDARVAFVVEPKIDGLA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----------------NIP 182 +T+ Y G V A RGDG +GEDV+A +R IP IP L IP Sbjct: 123 VTLIYRNGILVRGATRGDGETGEDVTANLRTIPGIPLRLGAFASNPEGQTNGAPVQAVIP 182 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241 +IEVRGEVY+ DFL LN+++ A G K ANPRNAA+G LR+ +P R L FF + Sbjct: 183 PLIEVRGEVYMRIADFLRLNEQLAASGEKVAANPRNAAAGSLRQKDPAITARRPLRFFAY 242 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+G+ + + Q+E L +R LGFPVN R+ ++Y E + R L Y++DG Sbjct: 243 GIGQIEGVQVQTQWETLNLLRTLGFPVNRDARRFERLDDALAYCREWMTRRDELEYEVDG 302 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V K+D + Q QLG R PRW I+ KF ++A +RL+DI + +GRTG++TP A +EPV Sbjct: 303 VVIKIDSLAQQAQLGVVGRDPRWAIAFKFPAREAVSRLIDIVVNVGRTGVITPNAVIEPV 362 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 NIGG + NA+LHN DYI RDIR+GD V+VKRAG+VIP +V IV R Sbjct: 363 NIGGVTVRNASLHNADYI-----------AERDIRIGDYVIVKRAGDVIPYIVGPIVARR 411 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 +P+ P+ CP C + + R G++ A+RC C AQ R++HFVSR A Sbjct: 412 DGSERPWQMPATCPACGTPLER----AEGEV--AYRCPNFGICPAQITRRIEHFVSRGAM 465 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I G+G++Q+ F + ++ AD++TL + N+ G+G V NL + Sbjct: 466 DIAGIGEKQVQLFVERG----WVQDVADLYTL------TPDHFANVEGYGPKRVANLLSA 515 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I +N L R I LGIR+VG +A+ LA ++ S A + I D L I Sbjct: 516 IAGSKNRPLHRLIVGLGIRYVGEVVAQILADHFGSLDALAAASADEI-----DALEGI-- 568 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTL 658 G IA ++ ++ P + A+ A LK E +S + K V TGTL Sbjct: 569 ---GPAIAASVAAYFARPES-KALIAKLKRAGVRTEAQETARASRGNALAGKTFVITGTL 624 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFLFL 717 + R +A +T G VS +S+KTD +++G P G+K KAQ+LG+ +++E L L Sbjct: 625 PSMSREEASALITAHGGKVSGSVSKKTDYLVIGAEPGGTKFAKAQELGIPMIDEAGLLAL 684 Query: 718 LQQYNTT 724 + T Sbjct: 685 IGSGRTA 691 >gi|317401960|gb|EFV82562.1| DNA ligase [Achromobacter xylosoxidans C54] Length = 699 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 268/730 (36%), Positives = 398/730 (54%), Gaps = 70/730 (9%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L EI H+ YY Y P I D+EYD L R + A P+L P P Sbjct: 9 AAETAARLRAEIEQHNVRYYVYDDPSISDAEYDRLMRELQDLEAAHPELV---TPESPTQ 65 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-----DNSIFFTLE 131 ++G + V H++P LSL ++ ED+ F R+ + + +F E Sbjct: 66 RVGAAPVSAFGSVRHAVPMLSLGNAFDEEDVVAFDRRVTDTLRGAGLLGPAQQAEYFC-E 124 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG I++RYE G+ V AA RGDG +GEDV++ IR I IP LS P+++EVRGEV Sbjct: 125 LKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLSGPAPKVLEVRGEV 184 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK----- 245 +++ DF LN K + NPRNAA+G LR+L+P R L FF +G G+ Sbjct: 185 LMNRADFEKLNAAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVRGLP 244 Query: 246 ----------------TSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEM 288 S + K ML + LG PVN +A G++++Y ++ Sbjct: 245 GTQSGLFDEASAGAADASTLPEKSHGAMLDWLASLGLPVNVKHNHRATGAEGLMAFYAKV 304 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 ++R LPYDIDG+VYKVD QK LG AR+PR+ ++HKF ++A+T LLDI++Q+GR Sbjct: 305 GALRPELPYDIDGVVYKVDSLPAQKLLGFVARAPRFALAHKFPAEEATTTLLDIEVQVGR 364 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TPVARL+PV +GG +TNATLHNED I+ +D+R+GD V+V+RAG+ Sbjct: 365 TGAITPVARLKPVFVGGVTVTNATLHNEDEIR-----------RKDVRIGDTVIVRRAGD 413 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 VIP+VV ++ +R DA+ F P CP+C S + R L +T RCTGGL C+AQ+ Sbjct: 414 VIPEVVGAVLEKRPADAREFVMPKACPVCGSAIER-LEDET-----IARCTGGLFCAAQR 467 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + L H SR A +IEGLG++ ++ S ++ AD+F+L+ + ++ Sbjct: 468 KQTLWHAASRKALDIEGLGEKLVEQLVDSG----RVKSLADLFSLRPLELVGLDRM---- 519 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G S NL ++I+K R +L R +F+LGIRHVG AR +A+++ S I I+ Sbjct: 520 --GQKSADNLVEAIDKARAPALGRLLFALGIRHVGETTARDVARHFGS-------IEAIM 570 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 + D +L VP VG ++A +I F+ N + L + ++ + + Sbjct: 571 DADED---ALSSVPDVGPVVAGSIRRFFAEQHNRDVIGQLKAQGVHAVAEAVPQ-DTTLA 626 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K V TGTL R +A + G VS +S+KT ++ G++ GSKL KAQ+LGV + Sbjct: 627 GKTFVLTGTLPNWTREEASMRIQAAGGKVSGSVSKKTAYLVAGEDAGSKLTKAQELGVTV 686 Query: 709 MNEEQFLFLL 718 ++E+ LL Sbjct: 687 LDEDGLKELL 696 >gi|24374425|ref|NP_718468.1| DNA ligase, NAD-dependent [Shewanella oneidensis MR-1] gi|81460839|sp|Q8ED70|DNLJ_SHEON RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|24348997|gb|AAN55912.1|AE015728_1 DNA ligase, NAD-dependent [Shewanella oneidensis MR-1] Length = 689 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 258/717 (35%), Positives = 404/717 (56%), Gaps = 55/717 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +A++ + A+ + +L Q ++ H+ YY P I DSEYD L ++ + +P ++ Sbjct: 16 QAVTPQTAQPLMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQQLKKLEAEYPQFVLAD 75 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFF 128 P ++GG ++TH P LSL+ ++ D F R+ R Q + F Sbjct: 76 SPT---QRVGGLALAKFEQITHLKPMLSLDNAFDEADFTAFHKRVSDRVGQ------VSF 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP R+ N PE++EV Sbjct: 127 CCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLRLRGNNYPELVEV 186 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244 RGE ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG Sbjct: 187 RGEAFMPKAAFEALNERARLKDDKQFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVV 246 Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 +S AK YE LQ+++ G PV++ ++ + + + +YY ++ + RS LP++IDG+V Sbjct: 247 EPSSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELNQVFAYYKDILTRRSDLPFEIDGVV 306 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++ + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV + Sbjct: 307 MKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 366 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHN D I+ L + VGD V+++RAG+VIP++V I+ R Sbjct: 367 GGVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRSE 415 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DAQ FP CP+C S V R G+ VA RC+GGL C AQ+ E +KHF SR A +I Sbjct: 416 DAQAIVFPQHCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDI 469 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + ++ E ++ PAD+F L T ++ G S TNL +I Sbjct: 470 DGMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLALAIE 519 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +L RF+++LGIR VG A +LA ++ S A I I LI V Sbjct: 520 AAKTTTLPRFLYALGIREVGEATAANLAAHFGSLD--ALRIATI--------EQLIEVED 569 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G+++AQ + F+ P N+ ++AL+ P+I + ++ + V TGTL ++ Sbjct: 570 IGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIEAPSAD-EQPLKGQTWVLTGTLNQL 628 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R+ A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 629 NRNDAKAQLQVLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 685 >gi|238790828|ref|ZP_04634584.1| DNA ligase [Yersinia frederiksenii ATCC 33641] gi|238721075|gb|EEQ12759.1| DNA ligase [Yersinia frederiksenii ATCC 33641] Length = 670 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 249/710 (35%), Positives = 409/710 (57%), Gaps = 47/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L ++ P Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITNDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ +++ E F R++ + K + F E K Sbjct: 60 --QRVGAAPLDAFDQVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++ +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+N V+ ++++Y +++ R++L +DIDG+V KVD Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVKLCTGSDQVIAFYRQVEQDRASLGFDIDGVVIKVDSLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++++R DA+ +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PDHCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+FTL + K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFTL------TAGKLTGLDRMGPKSAQNLIVALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNL----------RAADIEALKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +E L K +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVLNFLSEEHNQKVIETLEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668 >gi|218690549|ref|YP_002398761.1| NAD-dependent DNA ligase LigA [Escherichia coli ED1a] gi|254781322|sp|B7MY64|DNLJ_ECO81 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218428113|emb|CAR09030.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a] Length = 671 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 252/715 (35%), Positives = 408/715 (57%), Gaps = 56/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V + ++++Y+E++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGLKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A E +I L +VP VG Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++A + F+ N + LL E I + + + S K +V TG+L ++ R Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSR 614 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|161502427|ref|YP_001569539.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|190359281|sp|A9MIG0|DNLJ_SALAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160863774|gb|ABX20397.1| hypothetical protein SARI_00461 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 671 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/716 (35%), Positives = 408/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R A+ PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRALEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEEARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++++Y+ ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLAFYHNVEEDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIDRL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 RF+++LGIR VG A LA Y+ + + A + D+ L +VP VG Sbjct: 505 ATIFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AASIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNREVIGQLLAEGVHWPAPVV-INAQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L LL Sbjct: 614 RDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669 >gi|39995996|ref|NP_951947.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA] gi|81702997|sp|Q74ER9|DNLJ_GEOSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|39982761|gb|AAR34220.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA] gi|298505011|gb|ADI83734.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens KN400] Length = 670 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 257/710 (36%), Positives = 391/710 (55%), Gaps = 48/710 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A +++L E+ H+ YY +P I D+EYD L R + FPDLA P+ P Sbjct: 4 QTAADRVAALRTELERHNRLYYAEDRPEITDAEYDLLFRELVDLETRFPDLA---APDSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG +VTH IP LSLE + ++ F R+ RF D I + EPK+ Sbjct: 61 TQRVGGAPLDKFEQVTHRIPMLSLENAFTDVEIADFDDRVKRFLGLHGDVEIDYVCEPKM 120 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG + + YE+G + RGDG GE+V+ ++ + IP R+ PE++EVRGEVY+ Sbjct: 121 DGLAVELVYERGILTVGSTRGDGVVGENVTHNLKTVRGIPLRLRCEQPPELLEVRGEVYL 180 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251 F LN + G P+ANPRNAA+G +R+L+ + IT R L F + G+ Sbjct: 181 PLAAFQRLNAQREEEGEPPFANPRNAAAGSIRQLD-SRITARRPLAIFCYAPGEVRGASF 239 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E L ++ G PVN +R I++YY EM R +LPY+IDG+V KVD F+L Sbjct: 240 AAQTEFLDRIGEWGLPVNPLIRPVKGVAEILAYYREMTERRDSLPYEIDGVVVKVDSFAL 299 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LGE++RSPRW ++ KF +QA T + DI +GRTG++TP A L PV + G ++ A Sbjct: 300 QRELGEKSRSPRWAVAVKFPPRQAVTVVEDIVPSVGRTGVITPTANLRPVEVSGVTVSRA 359 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN + ++ +DIR+GD V+++RAG+VIP VV ++ +R +P P Sbjct: 360 TLHNWEEME-----------RKDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERPLPIP 408 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S VV+ + A RC GL+C AQ E + HF SRDA ++EGLG++ + Sbjct: 409 AVCPECGSEVVKIPDE------VAVRCM-GLSCPAQIRESIIHFASRDAMDMEGLGEKYI 461 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + ++ AD++TL + Q ++ GD NL ++I + L Sbjct: 462 EQLLR----LGLVKNVADLYTLTKDQFMQFDRM------GDKLAENLLNAIEASKQRELS 511 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFIF+LGIRHVG A+ LA + S +N + L+ + VG +A++ Sbjct: 512 RFIFALGIRHVGEHTAKLLAGAFGSIENLERATEE----------ELLSIREVGPQVARS 561 Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I+ F++N N + + K V P+ EK V K VFTG L + R +AQ+ V Sbjct: 562 IITFFRNEGNRETIRRMFKAGVRPTA--EEKKVGGRFTGKTFVFTGALTRFSRPEAQKMV 619 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G + +S+KTD ++ G GSKL+KA+QLGV+++ E++FL +L++ Sbjct: 620 EKEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVRVLTEDEFLAMLEE 669 >gi|327399096|ref|YP_004339965.1| DNA ligase [Hippea maritima DSM 10411] gi|327181725|gb|AEA33906.1| DNA ligase [Hippea maritima DSM 10411] Length = 667 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/716 (35%), Positives = 409/716 (57%), Gaps = 66/716 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A++ + L +++ YH+ YY PII DSEYD + + + ++P D N P Sbjct: 5 EAKERIEQLRKKLHYHNYRYYVLDDPIISDSEYDMMLKELKELEESYPQFY---DENSPT 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG KV H IP LSLE ++ D+R+F ++ RF + +D I +++EPK D Sbjct: 62 VRVGGAPLNKFEKVEHKIPMLSLEDGFDDNDIREFDRKVKRFLKLPEDKKIAYSVEPKFD 121 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRGEVYIS 194 G I + YE GK A+ RGDG+ GE+V+ I+ I +P VL ++ P + ++V+GEV ++ Sbjct: 122 GLSIDLIYENGKLTVASTRGDGYVGENVTQNIKTIRNVPLVLPIDTPPMYLDVQGEVLLT 181 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGL-GKTSEI 249 K +F +N E + G +ANPRNAA+G +R+L+P + + + +++ + G +I Sbjct: 182 KEEFERINQERLKNGLNVFANPRNAAAGSVRQLDPKETAKRNLIMIMYYIRQIEGYKRKI 241 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + Q++ L+ ++ +GFP ++ R + Y E++ R TLPY++DG+V KVD+F Sbjct: 242 LS--QHDALEALKEMGFPTSSLNRLVVGIEEAIEYKKELEIKRETLPYELDGIVIKVDDF 299 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+ LG +SPRW I+ KF +QA+T++ DI++ +GRTGILTPVA LEPVNIGG +++ Sbjct: 300 ELQESLGATTKSPRWAIAFKFPAQQATTKIKDIEVNVGRTGILTPVAILEPVNIGGVVVS 359 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LH D I+ +DIR+GD V V+RAG+VIP+VV + + R + F Sbjct: 360 RASLHTMDEIE-----------KKDIRIGDVVFVQRAGDVIPEVVKPVKDLRDGSEKKFV 408 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C SRVV+D A +RC+ + C E +KHFVSR A NI+G G + Sbjct: 409 MPEKCPVCGSRVVKD--------GAYYRCS-NINCPKVLKESIKHFVSRKAMNIDGFGDK 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRR 546 ++ D I ADI+ L + E ++G G+ NL SI + + Sbjct: 460 LIEQLV---DKGIVKNI-ADIYELDK---------ETLMGLDRVGEKLAENLISSIQRSK 506 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +FI++LGIRHVG +A+ LA+ + + +N + + L+ + +G+ Sbjct: 507 GTTFAKFIYALGIRHVGEFVAKLLAERFKNLENLKKATKD----------ELLAIDGIGE 556 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQR 663 IA ++V F+ P+N+ ++ LL G H ++ + E I K VFTGTL K R Sbjct: 557 EIADSVVSFFSEPKNLQTIDKLL-----YYGIHFEDKTKEHSRIAGKSFVFTGTLSK-PR 610 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + + G +V +S+ D ++VG+NPGSKL+KA+Q GV +++EE+ LL+ Sbjct: 611 EYFKELIEERGGIVRNSVSKNLDYLVVGENPGSKLKKAKQNGVSVISEEELYRLLE 666 >gi|166215832|sp|Q5ZWX6|DNLJ_LEGPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 673 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 257/707 (36%), Positives = 391/707 (55%), Gaps = 54/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + +L+++I +D YY +P++ D+EYD + +P P+ P + Sbjct: 7 KESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SPDSPTQR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEPKID 135 + G + + V H P LSL ++ ++L+ FI R +K D+ + F EPK+D Sbjct: 64 VSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAI---EKLDEPNQQLVFACEPKLD 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G +AA RGDG GE+++A I+ I ++P R+ N P++IEVRGEVYI Sbjct: 121 GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252 K DF A N +G K +ANPRNAA+G LR+LNP +R L + +G+G + Sbjct: 181 KADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E L ++ GF V+ R+A G + YY M + R+ LP++IDG+VYK+D SLQ Sbjct: 241 SHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG +R+PR+ +HKF + TRL+ +D Q+GRTG +TPVARLEPV++GG ++NAT Sbjct: 301 QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I +DIR+GD V+++RAG+VIP+VV +I+ +R +A+ P Sbjct: 361 LHNFDEIT-----------RKDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPK 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S VVR+ + A RC GGL C AQ + HF SR A IEGLG +D Sbjct: 410 NCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLID 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 D + AD++ L + + N+ G+ S NL ++ K + + R Sbjct: 464 QLV---DEGIVHHL-ADLYELDLQ------TLANLPRMGEKSAKNLLSALEKSKKTTFNR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 F+++LGIR +G AR LA++Y ++ A I ++ N+ +G + A Sbjct: 514 FLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLND-----------IGPVAASH 562 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQE 668 IV F+ N+ ++ LL E+ + EK N + K +V TGTL + R +A+ Sbjct: 563 IVHFFAQAHNLEVIDRLL-ELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKA 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + LGA VS +S KTD ++ G GSKL KA +LGV I+ E++FL Sbjct: 622 KLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFL 668 >gi|91784125|ref|YP_559331.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400] gi|123358676|sp|Q13XB0|DNLJ_BURXL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91688079|gb|ABE31279.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400] Length = 688 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 261/722 (36%), Positives = 398/722 (55%), Gaps = 51/722 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+ + + + L E+ + YY +P + D+EYD L + ++I PDL Sbjct: 5 PVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLIV 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-- 125 P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 65 ---PDSPTQRVGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPPV 121 Query: 126 -IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPE 183 + + E K DG I++RY G FV A+ RGDG +GE+V+ +R I +IP R+ +P Sbjct: 122 PVEYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVPH 181 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVH 241 +++VRGEV + K DF LN+ A +K +ANPRNAA+G LR+L+ + IT R L+FF + Sbjct: 182 VLDVRGEVLMFKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLD-SKITAQRPLSFFSY 240 Query: 242 GLGKTSEIFAKGQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G+G + + E+L + LG PVN + G++ +++ + R LPYDID Sbjct: 241 GIGVLEGMDMPATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDID 300 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKV+ Q+ LG +R+PR+ ++HKF ++A TRL+ ID+Q+GRTG +TPVARLEP Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAVTPVARLEP 360 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ Sbjct: 361 VFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSALLDR 409 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R DA+ F P+ CP+C S + R + A RCTGGL C AQ+ + L HF R A Sbjct: 410 RPDDAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRA 463 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+GLG++ +D + +R PAD+F L + + F + S NL D Sbjct: 464 LDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLD 513 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 S+ K ++ +L RFI++LGIRHVG A+ LAK++ S + ND Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVND------- 566 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGT 657 VG ++A++I +F+ N +E L + P K + K +V TGT Sbjct: 567 ---VGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPKAPQGVLAGKTVVLTGT 623 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L + R +A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ L Sbjct: 624 LPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 683 Query: 718 LQ 719 L+ Sbjct: 684 LE 685 >gi|254373281|ref|ZP_04988769.1| hypothetical protein FTCG_00864 [Francisella tularensis subsp. novicida GA99-3549] gi|151571007|gb|EDN36661.1| hypothetical protein FTCG_00864 [Francisella novicida GA99-3549] Length = 678 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 269/728 (36%), Positives = 409/728 (56%), Gaps = 65/728 (8%) Query: 6 LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 + P E SI+ A+ EL + L +S Y+ KPII DS+YD L R + Sbjct: 1 MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 + P + N L+++GGE+ + H SL ++++E+LR F +I Sbjct: 61 VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + I EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P L+ Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169 Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236 N PE +EVRGE+ + K FL+LN+ M K +ANPRNAA+G +R L+ + R L Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229 Query: 237 NFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + +G+G S+ F + Q+E++ ++ GF +++ + A F + Y+++M R+ Sbjct: 230 KLYSYGIGYFSKDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDGLV+KV+ LQ +G AR P+W +++KF ++ + +L+++ Q+GRTG +TP Sbjct: 290 LAYDIDGLVFKVNNIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITP 349 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +++NATLHN + IK +DIRV DRV+V+RAG+VIP+VV Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVSDRVIVRRAGDVIPEVV 398 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + R PDAQ P+ CP+C S + ++N + A +RCTGG C AQ ERLKH Sbjct: 399 KSLPQYRKPDAQVVEMPTSCPVCDS-AIENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSR A +I+ LG + ++ A I+ PADI+ L Q T ++ G S Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFDQLTGLERM------GAKS 502 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 N+ DSI K + SL RFIF++GI+ VG + +LA ++ S ++F + Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDVGEVSSEALANHFGSLESFREA----------K 552 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650 + LI + +G+I+A IV F+ + NI VE LL K +P H N S K Sbjct: 553 FEQLIEINDIGEIMANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNES--FTGK 610 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+ + R + + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670 Query: 711 EEQFLFLL 718 E+ LL Sbjct: 671 EDNLKDLL 678 >gi|221215451|ref|ZP_03588415.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1] gi|221164635|gb|EED97117.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1] Length = 691 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 259/708 (36%), Positives = 392/708 (55%), Gaps = 52/708 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L R + PDL P+ P ++GG + Sbjct: 20 LRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLVT---PDSPTQRVGGAVA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + +D+ F R+ K D + + + E K DG Sbjct: 77 SGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++RYE G FV A+ RGDG +GEDV+ +R I +IP ++ +P +++VRGEV + K Sbjct: 137 AISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGERVPAVLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254 DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G + Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPMPDTH 256 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L LG PVN G++ ++ ++ R +LPYDIDG+VYKV+ Q + Sbjct: 257 SALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQDR 316 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PR+ ++HKF ++A T+L+ I +Q+GRTG +TPVARLEPV +GGA +TNATLH Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATVTNATLH 376 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F P+ C Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTEC 425 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + +R PAD+F L + + F + S NL DS+ K ++ +L RFI Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLKKAKHTTLARFI 529 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIRHVG A+ LAK++ S ++ I+ D+ L+ V VG I+A++I + Sbjct: 530 YALGIRHVGESTAKDLAKHFGS-------LDPIMNATIDE---LLEVNDVGPIVAESIHQ 579 Query: 615 FYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N +E L K P K + K +V TGTL + R A+E + Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDDAKEMLE 639 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD +I G GSKL KA+ LG+ +++E+ LL+ Sbjct: 640 AAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEALGIPVLDEDGLHQLLE 687 >gi|52841193|ref|YP_094992.1| DNA ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628304|gb|AAU27045.1| DNA ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 683 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 257/707 (36%), Positives = 391/707 (55%), Gaps = 54/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + +L+++I +D YY +P++ D+EYD + +P P+ P + Sbjct: 17 KESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SPDSPTQR 73 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEPKID 135 + G + + V H P LSL ++ ++L+ FI R +K D+ + F EPK+D Sbjct: 74 VSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAI---EKLDEPNQQLVFACEPKLD 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G +AA RGDG GE+++A I+ I ++P R+ N P++IEVRGEVYI Sbjct: 131 GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP 190 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252 K DF A N +G K +ANPRNAA+G LR+LNP +R L + +G+G + Sbjct: 191 KADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN 250 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E L ++ GF V+ R+A G + YY M + R+ LP++IDG+VYK+D SLQ Sbjct: 251 SHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ 310 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG +R+PR+ +HKF + TRL+ +D Q+GRTG +TPVARLEPV++GG ++NAT Sbjct: 311 QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT 370 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I +DIR+GD V+++RAG+VIP+VV +I+ +R +A+ P Sbjct: 371 LHNFDEIT-----------RKDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPK 419 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S VVR+ + A RC GGL C AQ + HF SR A IEGLG +D Sbjct: 420 NCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLID 473 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 D + AD++ L + + N+ G+ S NL ++ K + + R Sbjct: 474 QLV---DEGIVHHL-ADLYELDLQ------TLANLPRMGEKSAKNLLSALEKSKKTTFNR 523 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 F+++LGIR +G AR LA++Y ++ A I ++ N+ +G + A Sbjct: 524 FLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLND-----------IGPVAASH 572 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQE 668 IV F+ N+ ++ LL E+ + EK N + K +V TGTL + R +A+ Sbjct: 573 IVHFFAQAHNLEVIDRLL-ELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKA 631 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + LGA VS +S KTD ++ G GSKL KA +LGV I+ E++FL Sbjct: 632 KLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFL 678 >gi|320196260|gb|EFW70884.1| DNA ligase [Escherichia coli WV_060327] Length = 671 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 251/715 (35%), Positives = 408/715 (57%), Gaps = 56/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAVKLTGLERMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A E +I L +VP VG Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++A + F+ N + LL E I + + + S K +V TG+L ++ R Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSR 614 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|300940348|ref|ZP_07154941.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1] gi|300454839|gb|EFK18332.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1] Length = 671 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 410/712 (57%), Gaps = 50/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F+ N + ALL E I + + + S K +V TG+L ++ R A Sbjct: 558 SHVHNFFAEESNRNVISALLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 618 KARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|166216286|sp|A0KVI4|DNLJ_SHESA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 689 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 257/717 (35%), Positives = 406/717 (56%), Gaps = 55/717 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +A++ A+ + +L Q ++ H+ YY P I DSEYD L +R + +P ++ Sbjct: 16 QAVTPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAAD 75 Query: 70 DPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P ++GG M L+ F ++TH P LSL+ ++ D F R+ + F Sbjct: 76 SPT---QRVGG-MALAKFEQITHLKPMLSLDNAFDEADFSAFHKRV-----SDRVGEVSF 126 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP ++ N PE++EV Sbjct: 127 CCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEV 186 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244 RGE ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG Sbjct: 187 RGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVV 246 Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 TS AK YE LQ+++ G PV++ ++ + + +YY ++ + R+ LP++IDG+V Sbjct: 247 EPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVV 306 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++ + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV + Sbjct: 307 MKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 366 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHN D I L + VGD V+++RAG+VIP++V I+ R Sbjct: 367 GGVTVSNATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPE 415 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA+ +FP CP+C S V R G+ VA RC+GGL C AQ+ E +KHF SR A +I Sbjct: 416 DAKAIAFPQHCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDI 469 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + ++ E ++ PAD+F L T ++ G S TNL +I Sbjct: 470 DGMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GIKSATNLALAIE 519 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +L RF+++LGIR VG A +LA ++ S + A + I LI+V Sbjct: 520 AAKTTTLPRFLYALGIREVGETTAANLATHFGSLE--ALRVATI--------EQLIQVED 569 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G+++AQ + F+ P N+ ++AL+ P+I + ++ + V TGTL ++ Sbjct: 570 IGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIAAPSAD-EQPLKGQTWVLTGTLNQL 628 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R+ A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 629 NRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 685 >gi|29140957|ref|NP_804299.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213160907|ref|ZP_03346617.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424270|ref|ZP_03357114.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213583650|ref|ZP_03365476.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650852|ref|ZP_03380905.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|29136582|gb|AAO68148.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 671 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/713 (35%), Positives = 408/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P ILD+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++ Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKATT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A D+ L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + + + + S K +V TG+L ++ R Sbjct: 558 THVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INAQEIDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|206560458|ref|YP_002231222.1| DNA ligase [Burkholderia cenocepacia J2315] gi|254781275|sp|B4ECN6|DNLJ_BURCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|198036499|emb|CAR52396.1| DNA ligase [Burkholderia cenocepacia J2315] Length = 691 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 260/709 (36%), Positives = 397/709 (55%), Gaps = 54/709 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L R + P+L P+ P ++GGE Sbjct: 20 LRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVT---PDSPTQRVGGEAA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + ED+ F R+ K D + + + E K DG Sbjct: 77 GGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKATDLAGSVTDPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++RYE G FV AA RGDG +GEDV+ +R I +IP ++ ++P +++VRGEV + K Sbjct: 137 AISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKG 253 DF LN+ A ++ +ANPRNAA+G LR+L+ + IT R L+FF +G+G + Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLDGMPMPDT 255 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +L G PVN + G++ ++ ++ R +LPYDIDG+VYKV+ Q+ Sbjct: 256 HTALLDWYEAFGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQE 315 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATL Sbjct: 316 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 375 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F P+ Sbjct: 376 HNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTE 424 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 425 CPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQ 478 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + +R PAD+F L + + F + S NL DS+ K ++ +L RF Sbjct: 479 LVELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARF 528 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+ LGIRHVG A+ LAK++ S + I+ + ++ L+ V VG I+A++I Sbjct: 529 IYGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESIH 578 Query: 614 EFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +F+ N +E L K P K + K +V TGTL + R A+E + Sbjct: 579 QFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEML 638 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 639 EAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|54293931|ref|YP_126346.1| DNA ligase [Legionella pneumophila str. Lens] gi|81368949|sp|Q5WXV3|DNLJ_LEGPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|53753763|emb|CAH15221.1| DNA ligase [Legionella pneumophila str. Lens] Length = 673 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/707 (36%), Positives = 390/707 (55%), Gaps = 54/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + +L+++I +D YY +P++ D+EYD + +P P+ P + Sbjct: 7 KESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SPDSPTQR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEPKID 135 + G + + V H P LSL ++ ++L+ FI R +K D+ + F EPK+D Sbjct: 64 VSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAI---EKLDEPNQQLVFACEPKLD 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G +AA RGDG GE+++A I+ I ++P R+ N P++IEVRGEVYI Sbjct: 121 GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252 K DF A N +G K +ANPRNAA+G LR+LNP +R L + +G+G + Sbjct: 181 KADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E L ++ GF V+ R+A G + YY M + R+ LP++IDG+VYK+D SLQ Sbjct: 241 SHLEQLNLLKEFGFRVSPETRRAVGIEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG +R+PR+ +HKF + TRL+ +D Q+GRTG +TPVARLEPV++GG ++NAT Sbjct: 301 QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I +DIR+GD V+++RAG+VIP+VV +I+ +R +A+ P Sbjct: 361 LHNFDEIT-----------RKDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPK 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S VVR+ + A RC GGL C AQ + HF SR A IEGLG +D Sbjct: 410 NCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLID 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 D + AD++ L + S ++ G+ S NL ++ K + + R Sbjct: 464 QLV---DEGIVHHL-ADLYELDLQTLASLPRM------GEKSAKNLLSALEKSKKTTFNR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 F+++LGIR +G AR LA++Y + A I ++ N+ +G + A Sbjct: 514 FLYALGIREIGEAGARVLAEHYCDVEGLKAATIEELMTLND-----------IGPVAASH 562 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQE 668 +V F+ N+ ++ LL E+ + EK N + K +V TGTL + R +A+ Sbjct: 563 VVHFFAQAHNLEVIDRLL-ELGIHWPKSEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKA 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + LGA VS +S KTD ++ G GSKL KA +LGV I+ E++FL Sbjct: 622 KLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFL 668 >gi|117920017|ref|YP_869209.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3] gi|117612349|gb|ABK47803.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3] Length = 691 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 257/717 (35%), Positives = 406/717 (56%), Gaps = 55/717 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +A++ A+ + +L Q ++ H+ YY P I DSEYD L +R + +P ++ Sbjct: 18 QAVTPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAAD 77 Query: 70 DPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P ++GG M L+ F ++TH P LSL+ ++ D F R+ + F Sbjct: 78 SPT---QRVGG-MALAKFEQITHLKPMLSLDNAFDEADFSAFHKRV-----SDRVGEVSF 128 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP ++ N PE++EV Sbjct: 129 CCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEV 188 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG-- 244 RGE ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG Sbjct: 189 RGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVV 248 Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 TS AK YE LQ+++ G PV++ ++ + + +YY ++ + R+ LP++IDG+V Sbjct: 249 EPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVV 308 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++ + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV + Sbjct: 309 MKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 368 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHN D I L + VGD V+++RAG+VIP++V I+ R Sbjct: 369 GGVTVSNATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPE 417 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA+ +FP CP+C S V R G+ VA RC+GGL C AQ+ E +KHF SR A +I Sbjct: 418 DAKAIAFPQHCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDI 471 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + ++ E ++ PAD+F L T ++ G S TNL +I Sbjct: 472 DGMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GIKSATNLALAIE 521 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +L RF+++LGIR VG A +LA ++ S + A + I LI+V Sbjct: 522 AAKTTTLPRFLYALGIREVGETTAANLATHFGSLE--ALRVATI--------EQLIQVED 571 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G+++AQ + F+ P N+ ++AL+ P+I + ++ + V TGTL ++ Sbjct: 572 IGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIAAPSAD-EQPLKGQTWVLTGTLNQL 630 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R+ A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 631 NRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 687 >gi|281179485|dbj|BAI55815.1| DNA ligase [Escherichia coli SE15] Length = 671 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 251/715 (35%), Positives = 408/715 (57%), Gaps = 56/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A E +I L +VP VG Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++A + F+ N + LL E I + + + S K +V TG+L ++ R Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSR 614 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|299771367|ref|YP_003733393.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1] gi|298701455|gb|ADI92020.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1] Length = 679 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 266/721 (36%), Positives = 395/721 (54%), Gaps = 59/721 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ R+ L Q I+ H+ YY +P I DSEYD L + A+ +PD +S+ P Sbjct: 7 IEQMRQ----LIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDQVQSDSPT- 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 K+GG+ VTH +P LSL ++N EDL F R+ ++ + + + +E K Sbjct: 62 --TKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVELK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGE 190 +DG I++ YE G + RGDG +GED++ ++ I +P+VL IP ++EVRGE Sbjct: 117 LDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V + K+ F LN + A G K +ANPRNAA+G LR+L+P +R L F+ +G+ + Sbjct: 177 VLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPN 236 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KVD+ Sbjct: 237 HNLTTMHDSLQWLTQLGFEIAERQYLCNSIQEVQQRYEQIQQERPDLQVEIDGMVVKVDD 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG + Sbjct: 297 LKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +N TLHN I L D+RVGD V V R G+VIPKV + R P+A+ Sbjct: 357 SNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRSPEAEIV 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGLG Sbjct: 406 HLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGD 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + ++ ADI+ L ++T + I G+ SV NL D+I + Sbjct: 460 RWVESLLHLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASKKT 511 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGIR VG AR LA + + + A D +L + P VGDI Sbjct: 512 TLARFIYALGIRGVGETTARMLANTFQTLE----------ALKAADVEALKKTPDVGDIT 561 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664 A+ I +F+ P NI ++ L+ + G H ++ + + V TGTL+++ R Sbjct: 562 AEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRD 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y T Sbjct: 617 QATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETDFLSLMASYGQT 676 Query: 725 L 725 L Sbjct: 677 L 677 >gi|215487666|ref|YP_002330097.1| NAD-dependent DNA ligase LigA [Escherichia coli O127:H6 str. E2348/69] gi|312967700|ref|ZP_07781915.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75] gi|254781317|sp|B7UGB2|DNLJ_ECO27 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|215265738|emb|CAS10145.1| DNA ligase, NAD(+)-dependent [Escherichia coli O127:H6 str. E2348/69] gi|312287897|gb|EFR15802.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75] Length = 671 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/715 (35%), Positives = 407/715 (56%), Gaps = 56/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V + ++++Y+E++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAVKLTGLERMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A E +I L +VP VG Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++A + F+ N + LL E I + + + S K +V TG+L ++ R Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSR 614 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|320180401|gb|EFW55332.1| DNA ligase [Shigella boydii ATCC 9905] Length = 671 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 410/712 (57%), Gaps = 50/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F+ N + LL E S I + + + S K +V TG+L ++ R A Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 618 KARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|313201136|ref|YP_004039794.1| DNA ligase, nad-dependent [Methylovorus sp. MP688] gi|312440452|gb|ADQ84558.1| DNA ligase, NAD-dependent [Methylovorus sp. MP688] Length = 689 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 265/724 (36%), Positives = 389/724 (53%), Gaps = 64/724 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L ++I+ ++ YY P + DSEYD L R A+ HA P+L P+ P ++G Sbjct: 17 QIRQLREQINLYNYQYYVLDDPSVPDSEYDKLFRELQALEHAHPELLT---PDSPTQRVG 73 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + V H LSL + +L F RI + + +EPK DG I Sbjct: 74 ASPLKAFASVQHRQAMLSLNNAFEESELTAFDKRIRDALGIA---QVEYAVEPKFDGLAI 130 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 T+ YE G FV A RGDG++GEDVS+ +R I IP L + N P +IEVRGEV + K DF Sbjct: 131 TLTYENGLFVQGATRGDGYTGEDVSSNLRTIRAIPMRLPVENPPALIEVRGEVLMLKRDF 190 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 LN + G K +ANPRNAA+G LR+L+P TR L FF +GLG + + Sbjct: 191 DKLNRQQAERGEKLFANPRNAAAGSLRQLDPAITATRPLMFFAYGLGIAEGVPQLSTHAA 250 Query: 258 -LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + + L PV++ G++ YY + + R LP+DIDG+VYKV+ + Q +LG Sbjct: 251 AMDYLASLRLPVSDQRDTVQGLAGLLDYYARIGAARPNLPFDIDGVVYKVNSIAQQNELG 310 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW ++HKF ++A T + ID+Q+GRTG +TPVARL+PV +GG +TNATLHN+ Sbjct: 311 FVSRAPRWAVAHKFPAQEALTEIQAIDVQVGRTGAITPVARLKPVFVGGVTVTNATLHNQ 370 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF----SFPS 432 D I +D+RVGD V V+RAG+VIP+VV +++ +R D + + Sbjct: 371 DEID-----------RKDVRVGDTVSVRRAGDVIPEVVAVVLEKRPADTVAYRLLEAINH 419 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S V+R + A RCTGGL CSAQ+ + + HF SR A +IEGLG++ +D Sbjct: 420 QCPVCGSHVIRQEDE------AVARCTGGLFCSAQRKQAVLHFASRRAIDIEGLGEKLVD 473 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 I ADI+ L +S ++ + S N+ D++ + +L R Sbjct: 474 QLVDGA----HIHTLADIYRLDLATLSSLDRM------AEKSAQNILDALQASKATTLAR 523 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI++LGIR+VG A+ LA+Y+ S Q D L +VP VG I+A++I Sbjct: 524 FIYALGIRNVGEATAKDLARYFGSLQALLAA----------DIEQLQQVPDVGPIVAESI 573 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKIQRHKA 666 +F P N ++ L +G H + K LV TGTL + R +A Sbjct: 574 RQFLSEPHNQQVIQDL-----QDVGLHWTESDGAGTQQGVLTGKTLVLTGTLPTMSRDQA 628 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + G V+ +S+KTD ++ G+ GSKL KAQ+LGV +++E L LL+ + Sbjct: 629 KALIEAAGGKVAGSVSKKTDFVVAGEEAGSKLTKAQELGVAVIDENGLLALLEDKQAS-- 686 Query: 727 IHDD 730 HDD Sbjct: 687 -HDD 689 >gi|78223924|ref|YP_385671.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15] gi|123756373|sp|Q39S28|DNLJ_GEOMG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78195179|gb|ABB32946.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15] Length = 671 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 258/710 (36%), Positives = 388/710 (54%), Gaps = 54/710 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + ++ L EI HD YY +P + D+EYDAL R + P+L P+ P Sbjct: 6 AERRIAELRAEIRRHDHLYYVLDRPELTDAEYDALYRELLKLEEEHPELV---TPDSPSR 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG +VTH IP LSLE + D+ +F R+ R I + EPK+DG Sbjct: 63 RVGGAPLEKFKQVTHRIPMLSLENAFTDGDIAEFDARVKRALALPAGEEIAYVCEPKLDG 122 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 + + YE G + RGDG GE+V+ ++ + +IP R+ N PE++EVRGEV++ Sbjct: 123 LAVELVYEYGTLTVGSTRGDGVVGENVTQNLKTVKSIPLRLEGENPPELLEVRGEVFLPL 182 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG 253 F LN + G P+ANPRNAA+G LR+L+ + IT R L F + G+ Sbjct: 183 AAFQRLNAQREEEGEPPFANPRNAAAGSLRQLD-SRITARRPLTMFCYAPGEIRGADFGS 241 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q E L +R G PV + RQ G+++YY EM R TLPY+IDG+V KVD F LQ+ Sbjct: 242 QGEFLSALRQRGLPVTSLARQVTGVAGVLAYYREMTEKRDTLPYEIDGVVVKVDSFPLQR 301 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LGE++RSPRW ++ KF +QA T + DI +GRTG++TP A L PV + G ++ ATL Sbjct: 302 ELGEKSRSPRWAVAVKFPPRQAVTVIEDIVPSVGRTGVITPTANLRPVEVSGVTVSRATL 361 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN + ++ +DIR+GD V+++RAG+VIP VV ++ +R + P+ Sbjct: 362 HNWEEME-----------RKDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERFLPIPAA 410 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S VV+ + A RC GL+C AQ E + HF SR+A ++EGLG++ ++ Sbjct: 411 CPECGSEVVKIPDE------VAVRCM-GLSCPAQIRESIIHFASRNAMDMEGLGEKYIEQ 463 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISL 550 + + AD++TL R ++ + F G+ NL ++I + L Sbjct: 464 LLR----LGLVGNVADLYTLTR---------DDFMKFDRMGEKLAENLLNAIEASKKREL 510 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIRHVG A+ LA + S N A+ L+ + +G +AQ Sbjct: 511 SRFIFALGIRHVGEHTAKLLATAFGSIDNLARATEA----------ELLSIREIGPQVAQ 560 Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +I F+ N N + +++ V P++ EK V + K VFTGTL + R +AQ+ Sbjct: 561 SITTFFHNEGNRETIRRMVEAGVEPTV--EEKKVGGKFTGKTFVFTGTLIRFSRSEAQKM 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V G + +S+KTD ++ GD GSKL+KA+QLGV ++ E++FL +L+ Sbjct: 619 VESEGGHAAGSVSKKTDYVVAGDEAGSKLDKARQLGVTVLAEDEFLQMLE 668 >gi|16077730|ref|NP_388544.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. 168] gi|221308499|ref|ZP_03590346.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. 168] gi|221312822|ref|ZP_03594627.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317746|ref|ZP_03599040.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. JH642] gi|221322025|ref|ZP_03603319.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis str. SMY] gi|7673987|sp|O31498|DNLJ_BACSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2632976|emb|CAB12482.1| DNA ligase [Bacillus subtilis subsp. subtilis str. 168] Length = 668 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 410/712 (57%), Gaps = 53/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A++ L + I+ + YY +P + D+EYD L + AI PDL P+ P Sbjct: 4 ETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTPDSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + + KVTH P LSL +N +DLR F R+ ++ + + + +E KI Sbjct: 61 TQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRV----RQSVGDDVAYNVELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I IP L +N IEVRGE Y+ Sbjct: 117 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIP--LKMNRELSIEVRGEAYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F ALN+E I +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ + Sbjct: 175 KRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + L + LGF N ++ + +++ +E+++ R+ LPY+IDG+V KVD Q+ Sbjct: 235 QSQGLDFLDELGFKTNQERKKCGSIEEVITLIDELQAKRADLPYEIDGIVIKVDSLDQQE 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+L Sbjct: 295 ELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED IK +DIR+ D+V+VK+AG++IP+VV+++V++R + + FS P+ Sbjct: 355 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVDQRTGEEKEFSMPTE 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 404 CPECGSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ +R AD++ L + + ++ G+ S NL SI K + SLER Sbjct: 457 LFEEN----LVRNVADLYKLTKERVIQLERM------GEKSTENLISSIQKSKENSLERL 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR +G++ A++LA ++ S +N + L+ V +G+ +A A++ Sbjct: 507 LFGLGIRFIGSKAAKTLAMHFESLENLKKASKE----------ELLAVDEIGEKMADAVI 556 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668 ++ + + L + ++ + K V +E K +V TG L+++ R++A+ Sbjct: 557 TYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKA 616 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LG ++ +S+ TD++I G+ GSKL KAQ+L +++ NEEQ + L++ Sbjct: 617 QIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668 >gi|296104078|ref|YP_003614224.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058537|gb|ADF63275.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 671 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/719 (35%), Positives = 408/719 (56%), Gaps = 61/719 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 SIEQ +++ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 3 SIEQ---QITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRDLEAQHPELI---TPD 56 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G E + +V H +P LSL+ +++ E F R+ + K +++ + E Sbjct: 57 SPTQRVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSSDALTWCCEL 114 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG ++I YE G V AA RGDG +GED++ +R I IP ++ NIP +EVRGEV Sbjct: 115 KLDGLAVSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 ++ + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 175 FLPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----IL 230 Query: 251 AKGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 G+ L + + G PV+N V+ ++ ++++Y +++ R TL +DIDG+V K Sbjct: 231 EGGELPDTHLGRLLQFKAWGLPVSNRVQLCDSPEAVLAFYRKVEEDRPTLGFDIDGVVIK 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G Sbjct: 291 VNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 L++NATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER D Sbjct: 351 VLVSNATLHNADEIDRL-----------GLRIGDKVVIRRAGDVIPQVVNVVQSERPDDT 399 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G Sbjct: 400 RAIVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDG 453 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + +D + E + PAD+F L + K+ + G S N+ +++ Sbjct: 454 MGDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLDRMGPKSAQNVVNALEAA 503 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + + RF+++LGIR VG A LA Y+ + A L +VP VG Sbjct: 504 KETTFARFLYALGIREVGEATAAGLAAYF----------GTLDALEKASIEELQKVPDVG 553 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 ++A + F+ N + LL++ +P + E+ + S K +V TG+L ++ Sbjct: 554 IVVATHVFNFFAEESNRDVIGKLLEQGIKWPAPVVVNAEE-IDSPFAGKTVVLTGSLSQL 612 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 613 SRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|118594798|ref|ZP_01552145.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181] gi|118440576|gb|EAV47203.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181] Length = 671 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 262/709 (36%), Positives = 412/709 (58%), Gaps = 52/709 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ L L++ IS H+ YY P+I D+E+D + AI P+L + P + Sbjct: 8 KERLVDLKKLISEHNYHYYVLDNPLISDAEFDKIFLEIKAIEDLNPELITIDSPT---QR 64 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE N S ++TH P LSL ++ +DL F RI ++ +I + EPK DG Sbjct: 65 VGGEPNKSFKQITHQRPMLSLGNAFDEKDLDVFDKRIR---EELGVANISYVAEPKFDGL 121 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVYISKN 196 +TI Y G+ AA RGDG GEDV+ I+ I +IP L N P IE+RGEV + KN Sbjct: 122 AVTIVYVDGELHLAATRGDGSVGEDVTHNIKTIKSIPLKLPSNSPAGQIEIRGEVIMLKN 181 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 DF+ LN + K +ANPRNAA+G LR+L+PT +R L+F+ + + ++ A Q Sbjct: 182 DFIGLNKRQLEANEKVFANPRNAAAGSLRQLDPTIAASRPLSFYAYSIFCDNKTLA-SQE 240 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L ++ L P +N ++ + G++ +YN + + R +LP+DIDG+VYKV+ ++Q +L Sbjct: 241 EGLDLLKQLLIPTSNLTKRVDGVRGMIDFYNAINNARKSLPFDIDGVVYKVNSLNMQDEL 300 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I+HKFA ++A T + DI++Q+GRTG +TPVARL PV + G +TNATLHN Sbjct: 301 GFVSRAPRWAIAHKFAAEEAMTTIKDINVQVGRTGSITPVARLMPVVVAGVTVTNATLHN 360 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED ++ +DI +GD V+V+RAG+V+P+V+ ++ +R D + F P+ CP Sbjct: 361 EDELR-----------RKDIHIGDFVMVRRAGDVVPEVIKVVHEKRPNDIKKFEMPTLCP 409 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +VR+ G+ V RC G+ C AQ+ + + HF SR A +I+GLG++ +D Sbjct: 410 ECSNVLVRE----EGESVL--RCNAGMLCPAQRKQSIMHFASRKAMDIDGLGEKIIDQLI 463 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 +S S+ +D++T++ T K+ + F S NL +SI K + +L +FI+ Sbjct: 464 ESS-LVLSV---SDLYTVK------TEKLLKLDRFAKKSAENLIESIEKSKKTTLGKFIY 513 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR+VG A LAK + S I+ I++ + + SL+ + +G +A +I + Sbjct: 514 ALGIRNVGEATAYDLAKQFGS-------IDKIMSASKE---SLLSIHDIGPTVATSIQNY 563 Query: 616 YQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + N V LLKE S +G E +S+E+E V TGTL ++R +A+ + Sbjct: 564 FNEDTNREQVAILLKEGIQWDSIEVGAEE--ISNELEGLVFVLTGTLTSLKRDEAKNLIL 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +S+KTD +I G + GSKL+KA LGVK++ E++ + L ++ Sbjct: 622 SCGGKVSGSVSKKTDYVIAGLDAGSKLDKASALGVKVIGEDELIQLTKK 670 >gi|168817829|ref|ZP_02829829.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205345161|gb|EDZ31925.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086917|emb|CBY96687.1| DNA ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 671 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/714 (35%), Positives = 408/714 (57%), Gaps = 54/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++ Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKATT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDII 608 RF+++LGIR VG A LA Y+ + + A I+ L +VP VG ++ Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE-----------LQKVPDVGIVV 556 Query: 609 AQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A + F+ N + LL E +P + + + + S K +V TG+L ++ R Sbjct: 557 ATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLNQMSRD 615 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+E + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 616 DAKERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669 >gi|172060972|ref|YP_001808624.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6] gi|254781273|sp|B1YSH2|DNLJ_BURA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171993489|gb|ACB64408.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6] Length = 691 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 259/708 (36%), Positives = 393/708 (55%), Gaps = 52/708 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L + PDL P+ P ++GGE+ Sbjct: 20 LRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLVT---PDSPTQRVGGEVA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + ED+ F R+ K D + + + E K DG Sbjct: 77 GGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++RYE G FV A+ RGDG +GEDV+ +R I +IP ++ ++P +++VRGEV + K Sbjct: 137 AISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254 DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G + Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPMPDTH 256 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L G PVN G++ ++ ++ R +LPYDIDG+VYKV+ Q + Sbjct: 257 SALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVNRRDEQDR 316 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PR+ ++HKF ++A TRL+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLH Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 376 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED ++ +DIR+GD V+V+RAG+VIP+VV ++ R DA F P+ C Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLERRPDDAAEFVMPTEC 425 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + +R PAD+F L + + F + S NL DS+ K ++ +L RFI Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFI 529 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIRHVG A+ LAK++ S + I+ + ++ L+ V VG I+A++I + Sbjct: 530 YGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESIHQ 579 Query: 615 FYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N +E L K P K + K +V TGTL + R A+E + Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEMLE 639 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E+ LL+ Sbjct: 640 AAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|82777805|ref|YP_404154.1| NAD-dependent DNA ligase LigA [Shigella dysenteriae Sd197] gi|309784866|ref|ZP_07679499.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617] gi|123728534|sp|Q32DE2|DNLJ_SHIDS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81241953|gb|ABB62663.1| DNA ligase [Shigella dysenteriae Sd197] gi|308927236|gb|EFP72710.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617] Length = 671 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/713 (35%), Positives = 412/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTILAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + SE+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGSEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++ +Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLVFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D++ Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDSREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|56708436|ref|YP_170332.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670907|ref|YP_667464.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198] gi|134301572|ref|YP_001121540.1| DNA ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|187931418|ref|YP_001891402.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. mediasiatica FSC147] gi|224457588|ref|ZP_03666061.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis MA00-2987] gi|254875281|ref|ZP_05247991.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|81597232|sp|Q5NF60|DNLJ_FRATT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123063401|sp|Q14GL3|DNLJ_FRAT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215759|sp|A4IWW8|DNLJ_FRATW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781335|sp|B2SFT1|DNLJ_FRATM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56604928|emb|CAG46020.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110321240|emb|CAL09403.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198] gi|134049349|gb|ABO46420.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis WY96-3418] gi|187712327|gb|ACD30624.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. mediasiatica FSC147] gi|254841280|gb|EET19716.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159628|gb|ADA79019.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis NE061598] Length = 678 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 267/728 (36%), Positives = 410/728 (56%), Gaps = 65/728 (8%) Query: 6 LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 + P E SI+ A+ EL + L +S Y+ KPII DS+YD L R + Sbjct: 1 MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 + P + N L+++GGE+ + H SL ++++E+LR F +I Sbjct: 61 VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + I EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P L+ Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169 Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236 N PE +EVRGE+ + K FL+LN+ M K +ANPRNAA+G +R L+ + R L Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229 Query: 237 NFFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + +G+G S+ ++ + Q+E++Q ++ GF +++ + A F + Y+++M R+ Sbjct: 230 KLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDGLV+KV+ LQ +G AR P+W I++KF ++ + +L+++ Q+GRTG +TP Sbjct: 290 LAYDIDGLVFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITP 349 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVV 398 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + R DAQ P+ CP+C S+ + ++N + A +RCTGG C AQ ERLKH Sbjct: 399 KSLPQYRKSDAQMVEMPTNCPVCDSK-IENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSR A +I+ LG + ++ A I+ PADI+ L Q T ++ S Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFEQLTGLERM------AAKS 502 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 N+ DSI K + SL RFIF++GI+ +G + +LA ++ S ++F + Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDALANHFGSLESF----------RDAK 552 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650 + LI + +G+I+A IV F+ + NI VE L K +P H N S K Sbjct: 553 FEELIEINDIGEIMANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNES--FTGK 610 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+ + R + + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670 Query: 711 EEQFLFLL 718 E+ LL Sbjct: 671 EDNLKDLL 678 >gi|320185101|gb|EFW59881.1| DNA ligase [Shigella flexneri CDC 796-83] Length = 671 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/713 (35%), Positives = 412/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++IVG+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIVGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|288941063|ref|YP_003443303.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180] gi|288896435|gb|ADC62271.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180] Length = 696 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 259/721 (35%), Positives = 394/721 (54%), Gaps = 54/721 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + +L EI YH+ YY P I D+EYD L + P L P+ P ++ Sbjct: 8 QRIEALRAEIRYHNHRYYVLDDPEIPDAEYDRLFAELQQLEAEHPALI---TPDSPTQRV 64 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G E L +V H++P +SL+ + E L +F R+ + D + +T EPK DG Sbjct: 65 GAEPRPELGEVRHAVPMISLDNAMSDERLVEFHRRLTVALPEFD--PVLYTAEPKFDGLA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 IT+RYE G V AA RGDG GEDV+ R IP +P R+L + PE++EVRGEVY+ + Sbjct: 123 ITLRYESGVLVLAATRGDGTRGEDVTHNARTIPNVPLRLLGEDWPEVLEVRGEVYMPRAG 182 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN + G +P+ANPRNAA+G LR+L+P R L F +G G+ + + Q+E Sbjct: 183 FDRLNARLEERGERPFANPRNAAAGSLRQLDPRVTARRPLRFCAYGWGEIAGEPGESQFE 242 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 MLQ++ G P++ +RQ G Y+ + R+TL YDIDG+V+K+D S Q LG Sbjct: 243 MLQRLAGWGLPISPELRQVAGLDGCRDYFEALGRRRATLDYDIDGVVFKLDRLSAQTALG 302 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A PRW I+ KF ++A T + ++ Q+GRTG +TPVARL PV +GG ++ ATLHN Sbjct: 303 ATAHHPRWAIARKFPAQEALTEVEAVEFQVGRTGAVTPVARLRPVQVGGVTVSKATLHNL 362 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D ++ +D+R+GD V ++RAG+VIP++V ++V R A+ P+ CP+ Sbjct: 363 DEVR-----------RKDVRIGDSVYIRRAGDVIPEIVRVLVERRPDGARLVELPTQCPV 411 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V+R G+ VA RC+GGL C AQ+ E ++HF +R A +IEGLG++ ++ Sbjct: 412 CGSDVIR----PEGEAVA--RCSGGLWCPAQRKEAIRHFAARRALDIEGLGEKLIEQLVD 465 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E +R PAD++ L + ++ + G+ S NL ++ + +L RF+F+ Sbjct: 466 LE----WVREPADLYRL------TADRLALLERMGEKSAANLIAALEHSKRTTLARFVFA 515 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A+ LA++ I ++A + +D L+ + +G ++A IV F Sbjct: 516 LGIREVGETTAQLLAEHVGG-------IEALMAASVED---LVAIKGIGPVVAAHIVGFM 565 Query: 617 QNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 N A+ LL EV S + ++ + K V TGTL + R + + Sbjct: 566 AQAHNREAIAHLLAAGIHWPEVERSDSMPAEPSAAPLTGKTFVITGTLSR-PREEFAARL 624 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730 LGA V+ +S+KTD ++ G GSKL KA+ LGV +++E L+ + +H D Sbjct: 625 QGLGAKVTGSVSKKTDYLLAGAEAGSKLAKAEALGVVVIDEAGLESLIARLQA---LHGD 681 Query: 731 D 731 D Sbjct: 682 D 682 >gi|254368889|ref|ZP_04984902.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022] gi|157121810|gb|EDO65980.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022] Length = 678 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 267/728 (36%), Positives = 410/728 (56%), Gaps = 65/728 (8%) Query: 6 LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 + P E SI+ A+ EL + L +S Y+ KPII DS+YD L R + Sbjct: 1 MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 + P + N L+++GGE+ + H SL ++++E+LR F +I Sbjct: 61 VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + I EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P L+ Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169 Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236 N PE +EVRGE+ + K FL+LN+ M K +ANPRNAA+G +R L+ + R L Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229 Query: 237 NFFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + +G+G S+ ++ + Q+E++Q ++ GF +++ + A F + Y+++M R+ Sbjct: 230 KLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDGLV+KV+ LQ +G AR P+W I++KF ++ + +L+++ Q+GRTG +TP Sbjct: 290 LAYDIDGLVFKVNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITP 349 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVV 398 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + R DAQ P+ CP+C S+ + ++N + A +RCTGG C AQ ERLKH Sbjct: 399 KSLPQYRKSDAQIVEMPTNCPVCDSK-IENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSR A +I+ LG + ++ A I+ PADI+ L Q T ++ S Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFEQLTGLERM------AAKS 502 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 N+ DSI K + SL RFIF++GI+ +G + +LA ++ S ++F + Sbjct: 503 SQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDALANHFGSLESF----------RDAK 552 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650 + LI + +G+I+A IV F+ + NI VE L K +P H N S K Sbjct: 553 FEELIEINDIGEIMANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVEHAYNES--FTGK 610 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+ + R + + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670 Query: 711 EEQFLFLL 718 E+ LL Sbjct: 671 EDNLKDLL 678 >gi|161524425|ref|YP_001579437.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616] gi|189350820|ref|YP_001946448.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616] gi|254781276|sp|A9AIK9|DNLJ_BURM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160341854|gb|ABX14940.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616] gi|189334842|dbj|BAG43912.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616] Length = 691 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 260/708 (36%), Positives = 392/708 (55%), Gaps = 52/708 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L R + PDL P+ P ++GG + Sbjct: 20 LRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLVT---PDSPTQRVGGAVA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + +D+ F R+ K D + + + E K DG Sbjct: 77 SGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196 I++RYE G FV A+ RGDG +GEDV+ +R I +IP L + +P +++VRGEV + K Sbjct: 137 AISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGDRVPAVLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254 DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G + Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPMPDTH 256 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L LG PVN G++ ++ ++ R +LPYDIDG+VYKV+ Q + Sbjct: 257 SALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQDR 316 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PR+ ++HKF ++A T+L+ I +Q+GRTG +TPVARLEPV +GGA +TNATLH Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATVTNATLH 376 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F P+ C Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTEC 425 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + +R PAD+F L + + F + S NL DS+ K ++ +L RFI Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFI 529 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIRHVG A+ LAK++ S ++ I+ D+ L+ V VG I+A++I + Sbjct: 530 YALGIRHVGESTAKDLAKHFGS-------LDPIMNATIDE---LLEVNDVGPIVAESIHQ 579 Query: 615 FYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N +E L K P K + K +V TGTL + R A+E + Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDDAKEMLE 639 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD +I G GSKL KA+ LG+ +++E+ LL+ Sbjct: 640 AAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEALGIPVLDEDGLHQLLE 687 >gi|91211748|ref|YP_541734.1| NAD-dependent DNA ligase LigA [Escherichia coli UTI89] gi|117624619|ref|YP_853532.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1] gi|218559359|ref|YP_002392272.1| NAD-dependent DNA ligase LigA [Escherichia coli S88] gi|237704934|ref|ZP_04535415.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA] gi|331658566|ref|ZP_08359510.1| DNA ligase, NAD-dependent [Escherichia coli TA206] gi|123084405|sp|Q1R8W1|DNLJ_ECOUT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215402|sp|A1ADS8|DNLJ_ECOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781318|sp|B7MHR5|DNLJ_ECO45 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91073322|gb|ABE08203.1| DNA ligase [Escherichia coli UTI89] gi|115513743|gb|ABJ01818.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1] gi|218366128|emb|CAR03873.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88] gi|226901300|gb|EEH87559.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA] gi|294491726|gb|ADE90482.1| DNA ligase, NAD-dependent [Escherichia coli IHE3034] gi|307626016|gb|ADN70320.1| NAD-dependent DNA ligase LigA [Escherichia coli UM146] gi|315288164|gb|EFU47564.1| DNA ligase, NAD-dependent [Escherichia coli MS 110-3] gi|323949546|gb|EGB45434.1| DNA ligase [Escherichia coli H252] gi|323955668|gb|EGB51426.1| DNA ligase [Escherichia coli H263] gi|331054231|gb|EGI26258.1| DNA ligase, NAD-dependent [Escherichia coli TA206] Length = 671 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 250/715 (34%), Positives = 408/715 (57%), Gaps = 56/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LG+R VG A LA Y+ + + A E +I L +VP VG Sbjct: 505 ETTFARFLYALGVREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++A + F+ N + LL E I + + + S K +V TG+L ++ R Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSR 614 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|78066803|ref|YP_369572.1| DNA ligase (NAD+) [Burkholderia sp. 383] gi|123742568|sp|Q39F38|DNLJ_BURS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77967548|gb|ABB08928.1| DNA ligase (NAD+) [Burkholderia sp. 383] Length = 691 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 259/709 (36%), Positives = 397/709 (55%), Gaps = 54/709 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L R + P+L P+ P ++GGE Sbjct: 20 LRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVT---PDSPTQRVGGEAA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + ED+ F R+ K D + + E K DG Sbjct: 77 GGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALDKTTDLAGSVTEPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++RYE+G FV A+ RGDG +GEDV+ +R I +IP ++ ++P +++VRGEV + K Sbjct: 137 AISLRYEQGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKG 253 DF LN+ A ++ +ANPRNAA+G LR+L+ + IT R L+FF +G+G + Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLDGMPMLDT 255 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +L LG PVN G++ ++ ++ R +LPYDIDG+VYKV+ Q+ Sbjct: 256 HSALLDWYESLGLPVNREREVVQGAEGLLGFFRKIGEKRESLPYDIDGVVYKVNRRDEQE 315 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATL Sbjct: 316 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 375 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F P+ Sbjct: 376 HNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTE 424 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 425 CPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQ 478 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + +R PAD+F L + + F + S NL DS+ K ++ +L RF Sbjct: 479 LVELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARF 528 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+ LGIRHVG A+ LAK++ S + I+ + ++ L+ V VG I+A+++ Sbjct: 529 IYGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESLH 578 Query: 614 EFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +F+ N +E L K P K + K +V TGTL + R A+E + Sbjct: 579 QFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAAKEML 638 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 639 EAAGAKVAGSVSKKTDYVVAGAEAGSKLVKAEELGIPVLDEDGLHQLLE 687 >gi|301063517|ref|ZP_07204049.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2] gi|300442456|gb|EFK06689.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2] Length = 671 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 260/716 (36%), Positives = 407/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E++R+E+ L+Q+I YH+ YY P I D++YD L +R + P+L P+ Sbjct: 1 MEKSRQEIDELKQKIEYHNHRYYVLDDPEIPDADYDRLFQRLLELETKHPEL---RSPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+GGE +V H P LSLE ++ + + F R+ +F DD + +T+EPK Sbjct: 58 PTRKVGGETKSGFSRVIHRSPMLSLENCFDPQQILDFDKRVRKFL--GDDAPVQYTVEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLNIPEIIEVR 188 IDG + + Y++G+ A+ RGDG GEDV+ I+ I +P R SL IP+++EVR Sbjct: 116 IDGLAVELVYKEGRLSVASTRGDGRVGEDVTRNIKTILNVPLKLVTRKQSLPIPDLLEVR 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246 GEVY+ FL LN+ A +ANPRNAA+G LR+L+ + IT R L+ F +G+G Sbjct: 176 GEVYMDVAAFLKLNEHRAARNESLFANPRNAAAGSLRQLD-SRITARRRLDIFCYGVGNA 234 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + K E++ ++ G VN + +T +VS ++ R PY+IDG V K Sbjct: 235 EGLSFKTHLEVMMALQHWGLRVNRPHITICDTPDAVVSGCRHIEETRGLFPYEIDGAVIK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ LQ +LG ++RSPRW +++KFA Q T +L I +Q+GRTG LTPVA+L PV +GG Sbjct: 295 VNRLDLQFRLGMKSRSPRWAMAYKFAPTQEMTTVLGIHVQVGRTGALTPVAQLAPVELGG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 L++ ATLHN++ I +DIR GD+V+V+RAG+VIP+VV + ++R + Sbjct: 355 VLVSRATLHNQEEID-----------RKDIREGDQVIVQRAGDVIPEVVKTVFSKRTGNE 403 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F P CP C + +++ K+G++VA RC + C AQ ++HFVS+ +I+G Sbjct: 404 KKFLMPEACPACGTAIIK----KSGEVVA--RCP-NVNCPAQVRGSIRHFVSKGGMDIDG 456 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV---SVTNLYDSI 542 LG++ ++ D ++ AD++ L R ++LG ++ S NL +I Sbjct: 457 LGEKLVNKLL---DKGL-VKDEADLYELTR---------ADLLGLDNIKEKSAANLLGAI 503 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K + SL RFI++LGIRHVG A L++ + NI + +N +L + Sbjct: 504 EKSKAPSLGRFIYALGIRHVGEFTAALLSERF----------GNIESLSNAGLEALSAID 553 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG IA+++ ++ +P+N +E L K + K + + K V TGTL ++ Sbjct: 554 GVGPQIAESVFNYFADPQNRALLERLFKAGVTPVSTRLKPADTPVAGKTFVLTGTLASVK 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+E +TQ G + +SR TD ++ GD PGSKL+KA++L V I+NE++FL LL Sbjct: 614 RSEAKEMITQKGGKAGSSVSRNTDYLVAGDEPGSKLQKARELDVAILNEKEFLDLL 669 >gi|239825842|ref|YP_002948466.1| NAD-dependent DNA ligase LigA [Geobacillus sp. WCH70] gi|239806135|gb|ACS23200.1| DNA ligase, NAD-dependent [Geobacillus sp. WCH70] Length = 670 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 258/720 (35%), Positives = 401/720 (55%), Gaps = 69/720 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A K + L + ++ ++ YY +P + D+EYD L + A+ +PDL + P+ Sbjct: 4 QAAMKRIEELRELLNKYNYEYYVLDRPSVPDAEYDRLMQELIALEEQYPDLKTKDSPS-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG+ + KV H P LSL +N DLR F R+ +++ + + + E KI Sbjct: 62 -QRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRV----RQEVGDDVAYVCELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I ++P L LN P +E RGE Y+ Sbjct: 117 DGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLP--LRLNEPVTLEARGEAYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F LN++ G + +ANPRNAA+G LR+L+P +R+L+ FV+ L E+ Sbjct: 175 KASFERLNEQRRNRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYSLANAEELGIDS 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 L ++ LGF N R+ ++ + NE RS LPY+IDG+V KVD F QK Sbjct: 235 HSAALDYLQQLGFKTNPERRRCANIDEVIQFVNEWHEKRSHLPYEIDGIVVKVDSFEQQK 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG A+SPRW +++KF ++ T+L+ I++ +GRTG++TP A LEPV + G + ATL Sbjct: 295 QLGATAKSPRWAVAYKFPAEEVVTKLIGIELSVGRTGVVTPTAILEPVRVAGTTVQRATL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED+I+ +DIR+GD V++K+AG++IP+VV+++ + R + PF P+ Sbjct: 355 HNEDFIR-----------QKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVMPTH 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +VR G++ A RC C AQ E L HFVSR A NIEGLG++ + Sbjct: 404 CPECASELVR----FDGEV--ALRCINP-KCPAQIREGLIHFVSRQAMNIEGLGEKVISQ 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ I AD++ L + Q ++ G+ S TNL +I + SLER Sbjct: 457 LFRE----GLIHDVADLYRLTKEQLIRLERM------GEKSATNLLRAIEASKQNSLERL 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIRHVGA+ A+ LA+++ + L+ + +G+ +A +IV Sbjct: 507 LFGLGIRHVGAKAAKVLAEHFGTMDRLQTATKE----------ELMAIHEIGEKMADSIV 556 Query: 614 EFYQNPRNICAVEALLKEV-------------SPSIGRHEKNVSSEIENKKLVFTGTLQK 660 ++ P V+ LL E+ +P G +V S K +V TG L+ Sbjct: 557 TYFAKPE----VKELLNELRAYGVNMEYKGPKTPKPG----DVHSYFAGKTVVLTGKLES 608 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R++A+E + QLG V+ +S+ TD++I G + GSKL KAQQL ++I +EE+FL ++Q Sbjct: 609 LSRNEAKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLNIEIWDEERFLQEIEQ 668 >gi|323967844|gb|EGB63256.1| DNA ligase [Escherichia coli M863] gi|327252066|gb|EGE63738.1| DNA ligase, NAD-dependent [Escherichia coli STEC_7v] Length = 671 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|321314391|ref|YP_004206678.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5] gi|320020665|gb|ADV95651.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5] Length = 668 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 409/712 (57%), Gaps = 53/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A++ L + I+ + YY +P + D+EYD L + AI PDL P+ P Sbjct: 4 ETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTPDSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + + KVTH P LSL +N +DLR F R+ ++ + + + +E KI Sbjct: 61 TQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRV----RQSVGDDVAYNVELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I IP L +N IEVRGE Y+ Sbjct: 117 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIP--LKMNRELSIEVRGEAYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F ALN+E I +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ + Sbjct: 175 KRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + L + LGF N ++ + +++ +E+++ R+ LPY+IDG+V KVD Q+ Sbjct: 235 QSQGLDFLDELGFKTNQERKKCGSIEEVITLIDELQAKRADLPYEIDGIVIKVDSLDQQE 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+L Sbjct: 295 ELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED IK +DIR+ D+V+VK+AG++IP+VV+++V +R + + FS P+ Sbjct: 355 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSMPTE 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 404 CPECGSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ +R AD++ L + + ++ G+ S NL SI K + SLER Sbjct: 457 LFEEN----LVRNVADLYKLTKERVIQLERM------GEKSTENLISSIQKSKENSLERL 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR +G++ A++LA ++ S +N + L+ V +G+ +A A++ Sbjct: 507 LFGLGIRFIGSKAAKTLAMHFESLENLKKASKE----------ELLAVDEIGEKMADAVI 556 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668 ++ + + L + ++ + K V +E K +V TG L+++ R++A+ Sbjct: 557 TYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKA 616 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LG ++ +S+ TD++I G+ GSKL KAQ+L +++ NEEQ + L++ Sbjct: 617 QIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668 >gi|293410811|ref|ZP_06654387.1| DNA ligase [Escherichia coli B354] gi|291471279|gb|EFF13763.1| DNA ligase [Escherichia coli B354] Length = 671 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|283832193|ref|ZP_06351934.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220] gi|291071830|gb|EFE09939.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220] Length = 671 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 405/712 (56%), Gaps = 50/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D EYD L + + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDLLMHKLQWLEALHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTDKLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGAL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ +++YY++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVALCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PQHCPVCNSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+FTL + K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFTL------TAGKLTGLDRMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + A E +I L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLD--ALEAASI--------EELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F+ N + LL + +P + E+ + S K +V TG+L + R A Sbjct: 559 HVFNFFAEESNREVIGQLLAQGIHWPAPVVINAEE-IDSPFAGKTVVLTGSLSLMSRDDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T+LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 618 KARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|187924439|ref|YP_001896081.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN] gi|254781278|sp|B2T5K0|DNLJ_BURPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|187715633|gb|ACD16857.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN] Length = 688 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 259/706 (36%), Positives = 393/706 (55%), Gaps = 51/706 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ + YY +P + D+EYD L + ++I PDL P+ P ++GGE Sbjct: 21 LRAELERANYAYYVLDQPDLPDAEYDKLFKELESIETEHPDLIV---PDSPTQRVGGEAA 77 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTLEPKIDGTMIT 140 V H P LSL + ED+ F R+ K + + E K DG I+ Sbjct: 78 SGFEPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPPVPVDYAAELKFDGLAIS 137 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 +RY G FV A+ RGDG +GE+V+ +R I +IP ++ +P +++VRGEV + K DF Sbjct: 138 LRYVDGAFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPHVLDVRGEVLMFKRDFE 197 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQY-E 256 LN+ A +K +ANPRNAA+G LR+L+ + IT R L+FF +G+G + + E Sbjct: 198 RLNERQRAAEQKEFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLEGMEMPATHSE 256 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L + LG PVN+ G++ +++ + R LPYDIDG+VYKV+ Q LG Sbjct: 257 LLDWYKELGLPVNSERAVVQGAEGLLGFFHGVGEKREKLPYDIDGVVYKVNRRDEQDALG 316 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLHNE Sbjct: 317 FVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNE 376 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA+ F P+ CP+ Sbjct: 377 DEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSALLDRRPSDAREFVMPTQCPV 425 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S + R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D + Sbjct: 426 CGSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVE 479 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +R PAD+F + + + F + S NL DS+ K ++ +L RFI++ Sbjct: 480 QN----LVRTPADLFNI------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYA 529 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG A+ LAK++ S + ND VG ++A++I +F+ Sbjct: 530 LGIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVND----------VGPVVAESIHQFF 579 Query: 617 QNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 N +E L K P K + K +V TGTL + R +A+E + Sbjct: 580 AEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPSLAREEAKEMLEAA 639 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD ++ G + GSKL KA++LGV +++E+ LL+ Sbjct: 640 GAKVAGSVSKKTDYLVAGADAGSKLAKAEELGVPVLDEDGMRKLLE 685 >gi|15832537|ref|NP_311310.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. Sakai] gi|168768500|ref|ZP_02793507.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486] gi|168778374|ref|ZP_02803381.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076] gi|208813694|ref|ZP_03255023.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045] gi|208821178|ref|ZP_03261498.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042] gi|209399429|ref|YP_002271890.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115] gi|217326968|ref|ZP_03443051.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588] gi|254794365|ref|YP_003079202.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. TW14359] gi|261223146|ref|ZP_05937427.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. FRIK2000] gi|261259301|ref|ZP_05951834.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. FRIK966] gi|291283640|ref|YP_003500458.1| DNA ligase [Escherichia coli O55:H7 str. CB9615] gi|166215595|sp|Q8XBL5|DNLJ_ECO57 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781320|sp|B5YZV8|DNLJ_ECO5E RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|13362753|dbj|BAB36706.1| DNA ligase [Escherichia coli O157:H7 str. Sakai] gi|189003243|gb|EDU72229.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076] gi|189362250|gb|EDU80669.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486] gi|208734971|gb|EDZ83658.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045] gi|208741301|gb|EDZ88983.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042] gi|209160829|gb|ACI38262.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115] gi|209764248|gb|ACI80436.1| DNA ligase [Escherichia coli] gi|209764250|gb|ACI80437.1| DNA ligase [Escherichia coli] gi|209764252|gb|ACI80438.1| DNA ligase [Escherichia coli] gi|209764256|gb|ACI80440.1| DNA ligase [Escherichia coli] gi|217319335|gb|EEC27760.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588] gi|254593765|gb|ACT73126.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. TW14359] gi|290763513|gb|ADD57474.1| DNA ligase [Escherichia coli O55:H7 str. CB9615] gi|320188751|gb|EFW63410.1| DNA ligase [Escherichia coli O157:H7 str. EC1212] gi|320640925|gb|EFX10409.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. G5101] gi|320646206|gb|EFX15133.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. 493-89] gi|320651712|gb|EFX20092.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. H 2687] gi|320657097|gb|EFX24906.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662857|gb|EFX30185.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. USDA 5905] gi|320667743|gb|EFX34654.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. LSU-61] gi|326340214|gb|EGD64018.1| DNA ligase [Escherichia coli O157:H7 str. 1125] gi|326344216|gb|EGD67977.1| DNA ligase [Escherichia coli O157:H7 str. 1044] Length = 671 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP++CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTYCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|323170330|gb|EFZ55983.1| DNA ligase, NAD-dependent [Escherichia coli LT-68] Length = 671 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +S+ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNSLEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|331673883|ref|ZP_08374646.1| DNA ligase, NAD-dependent [Escherichia coli TA280] gi|331069156|gb|EGI40548.1| DNA ligase, NAD-dependent [Escherichia coli TA280] Length = 671 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPTPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|16130337|ref|NP_416906.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. MG1655] gi|89109225|ref|AP_003005.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. W3110] gi|170019306|ref|YP_001724260.1| NAD-dependent DNA ligase LigA [Escherichia coli ATCC 8739] gi|170082020|ref|YP_001731340.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. DH10B] gi|188495579|ref|ZP_03002849.1| DNA ligase, NAD-dependent [Escherichia coli 53638] gi|238901574|ref|YP_002927370.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952] gi|256021895|ref|ZP_05435760.1| NAD-dependent DNA ligase LigA [Escherichia sp. 4_1_40B] gi|300951893|ref|ZP_07165701.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1] gi|300957240|ref|ZP_07169472.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1] gi|301023745|ref|ZP_07187485.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1] gi|312973347|ref|ZP_07787519.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70] gi|2506362|sp|P15042|DNLJ_ECOLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781324|sp|B1XA82|DNLJ_ECODH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781325|sp|B1IX60|DNLJ_ECOLC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149242732|pdb|2OWO|A Chain A, Last Stop On The Road To Repair: Structure Of E.Coli Dna Ligase Bound To Nicked Dna-Adenylate gi|146613|gb|AAA24070.1| DNA ligase (EC 6.5.1.2) [Escherichia coli] gi|1788750|gb|AAC75464.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. MG1655] gi|85675396|dbj|BAA16282.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr. W3110] gi|169754234|gb|ACA76933.1| DNA ligase, NAD-dependent [Escherichia coli ATCC 8739] gi|169889855|gb|ACB03562.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. DH10B] gi|188490778|gb|EDU65881.1| DNA ligase, NAD-dependent [Escherichia coli 53638] gi|238860822|gb|ACR62820.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952] gi|260448502|gb|ACX38924.1| DNA ligase, NAD-dependent [Escherichia coli DH1] gi|299880716|gb|EFI88927.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1] gi|300315993|gb|EFJ65777.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1] gi|300448878|gb|EFK12498.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1] gi|309702699|emb|CBJ02028.1| DNA ligase [Escherichia coli ETEC H10407] gi|310331942|gb|EFP99177.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70] gi|315137042|dbj|BAJ44201.1| NAD-dependent DNA ligase LigA [Escherichia coli DH1] gi|315615662|gb|EFU96294.1| DNA ligase, NAD-dependent [Escherichia coli 3431] gi|323936436|gb|EGB32725.1| DNA ligase [Escherichia coli E1520] gi|323941344|gb|EGB37529.1| DNA ligase [Escherichia coli E482] Length = 671 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 412/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|302390293|ref|YP_003826114.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646] gi|302200921|gb|ADL08491.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646] Length = 672 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/714 (35%), Positives = 395/714 (55%), Gaps = 52/714 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A + L + I+YH+ YY Y P+I D+EYD L R+ + + FP+L P+ P Sbjct: 5 EAEARIKELRELINYHNRQYYVYDNPVISDAEYDKLMRQLEKLEKQFPELI---TPDSPS 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE +V H +P +SL ++ +L+ F R+ + + + + +EPKID Sbjct: 62 QRVGGEPLPYFTQVVHRVPMMSLANAFDSGELKDFHRRV----TEAVGSEVQYVVEPKID 117 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-----EIIEVRGE 190 G ++I YE G F AA RGDG GEDV+ ++ I ++P LSL+ P ++EVRGE Sbjct: 118 GLAVSITYENGIFKTAATRGDGEVGEDVTQNVKTIKSVP--LSLDFPPDKRPAVLEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249 VY+ K DF LN+E G +ANPRNAA+G LR+L+P R L +++GLG I Sbjct: 176 VYLPKEDFRKLNEEREEQGLPLFANPRNAAAGSLRQLDPKVTAKRPLAVYIYGLGYAEGI 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + YE+LQ + +G VN V + F ++ Y R LPY+IDG+V KV+ Sbjct: 236 EFETHYEVLQFFKRIGLRVNPHVVLFDRFQDVIDYCMSWNEKRHDLPYEIDGMVIKVNSL 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q LG A+SPRW I++KF +Q T + DI +++GRTG+LTP A LEPV + G+ ++ Sbjct: 296 KQQGILGATAKSPRWAIAYKFPAEQKKTVIKDIIVRVGRTGVLTPTAILEPVRVAGSTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNEDYI+ +DI++GD V++ +AG+VIP+VV+++ +R + F Sbjct: 356 KATLHNEDYIR-----------EKDIKIGDTVIIHKAGDVIPEVVEVVKEKRTGKERDFE 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C S VR G+ AA+RCT C AQ ++HF SRDA +I GLG Sbjct: 405 MPHRCPECGSEAVR----LPGE--AAYRCTNSTGCPAQIRRSIEHFASRDAMDIRGLGSA 458 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + I+ AD++ L+R ++ G+ S NL +I + + Sbjct: 459 IVSLLISQG----LIKDAADLYYLKREDLVPLERM------GEKSAANLLAAIEESKKRP 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L+R I++LGI VG+ A LA+ + S I+++ +D LI+VP +GD IA Sbjct: 509 LDRLIYALGIPFVGSRTASLLAEAFSS-------IDDLQKAKYED---LIKVPEIGDKIA 558 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 Q+I+ F++ + + L + + ++ V TGTL+K R +A E Sbjct: 559 QSILAFFRQEQTNDLISRLRAAGVNMEAQKKAEGPRPLDGLTFVLTGTLEKYTRQQATEL 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + +LG V+ +S+KTD ++VG +PGSK E A +LG+KI+NE +F L++++ Sbjct: 619 IEKLGGRVTGSVSKKTDYVVVGKDPGSKYENALKLGIKILNEGEFEELIEKWKA 672 >gi|221198328|ref|ZP_03571374.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M] gi|221208267|ref|ZP_03581271.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2] gi|221171915|gb|EEE04358.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2] gi|221182260|gb|EEE14661.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M] Length = 691 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 260/708 (36%), Positives = 392/708 (55%), Gaps = 52/708 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L R + PDL P+ P ++GG + Sbjct: 20 LRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLVT---PDSPTQRVGGAVA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + +D+ F R+ K D + + + E K DG Sbjct: 77 SGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196 I++RYE G FV A+ RGDG +GEDV+ +R I +IP L + +P +++VRGEV + K Sbjct: 137 AISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGDRVPAVLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254 DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G + Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPIPDTH 256 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L LG PVN G++ ++ ++ R +LPYDIDG+VYKV+ Q + Sbjct: 257 SALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNRRDEQDR 316 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PR+ ++HKF ++A T+L+ I +Q+GRTG +TPVARLEPV +GGA +TNATLH Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATVTNATLH 376 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F P+ C Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTEC 425 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + +R PAD+F L + + F + S NL DS+ K ++ +L RFI Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFI 529 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIRHVG A+ LAK++ S ++ I+ D+ L+ V VG I+A++I + Sbjct: 530 YALGIRHVGESTAKDLAKHFGS-------LDPIMNATIDE---LLEVNDVGPIVAESIHQ 579 Query: 615 FYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N +E L K P K + K +V TGTL + R A+E + Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDDAKEMLE 639 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD +I G GSKL KA+ LG+ +++E+ LL+ Sbjct: 640 AAGAKVAGSVSKKTDYVIAGIEAGSKLAKAEALGIPVLDEDGLHQLLE 687 >gi|218548148|ref|YP_002381939.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ATCC 35469] gi|331684067|ref|ZP_08384663.1| DNA ligase, NAD-dependent [Escherichia coli H299] gi|254781331|sp|B7LL73|DNLJ_ESCF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218355689|emb|CAQ88301.1| DNA ligase, NAD(+)-dependent [Escherichia fergusonii ATCC 35469] gi|315298233|gb|EFU57493.1| DNA ligase, NAD-dependent [Escherichia coli MS 16-3] gi|331079019|gb|EGI50221.1| DNA ligase, NAD-dependent [Escherichia coli H299] Length = 671 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|115352108|ref|YP_773947.1| DNA ligase [Burkholderia ambifaria AMMD] gi|122322835|sp|Q0BE10|DNLJ_BURCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115282096|gb|ABI87613.1| DNA ligase, NAD-dependent [Burkholderia ambifaria AMMD] Length = 691 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 259/711 (36%), Positives = 395/711 (55%), Gaps = 58/711 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L + PDL P+ P ++GGE+ Sbjct: 20 LRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLVT---PDSPTQRVGGEVA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + ED+ F R+ K D + + + E K DG Sbjct: 77 GGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++RYE G FV A+ RGDG +GEDV+ +R I +IP ++ ++P +++VRGEV + K Sbjct: 137 AISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254 DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G + Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPMPDTH 256 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L G PVN G++ ++ ++ R +LPYDIDG+VYKV+ Q + Sbjct: 257 SALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVNRRDEQDR 316 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PR+ ++HKF ++A TRL+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLH Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 376 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F P+ C Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFVMPTEC 425 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + +R PAD+F L + + F + S NL DS+ K ++ +L RFI Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFI 529 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIRHVG A+ LAK++ S + I+ + ++ L+ V VG I+A++I + Sbjct: 530 YGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESIHQ 579 Query: 615 FYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 F+ N +E L P R + V + K +V TGTL + R A+E Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWAEGPPAPRAPQGV---LAGKTVVLTGTLPNLTRDAAKE 636 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E+ LL+ Sbjct: 637 MLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|332798609|ref|YP_004460108.1| DNA ligase [Tepidanaerobacter sp. Re1] gi|332696344|gb|AEE90801.1| DNA ligase [Tepidanaerobacter sp. Re1] Length = 675 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 262/709 (36%), Positives = 403/709 (56%), Gaps = 53/709 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + I QA + L + I YH+ YY P I D+EYD L R ++ FP L P Sbjct: 1 MDIVQAENRIKELRESIDYHNYRYYVLDNPEITDAEYDKLMRELISLESQFPQLI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE + KVTH P +SL ++ E+LR F R+ + N + + +E Sbjct: 58 DSPSQRVGGEPLEAFKKVTHREPMISLADAFSEEELRDFNRRV----TENVGNQVEYVVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVR 188 KIDG +++ YE G V AA RGDG GEDV+ ++ I ++P L++ IP +IEVR Sbjct: 114 LKIDGLAVSLTYENGLLVTAATRGDGVVGEDVTQNVKTIKSVPLRLNIQKDKIPMVIEVR 173 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246 GE+Y+SK F LN+E +G +ANPRNAA+G +R+L+ + IT R L+ F++ LG Sbjct: 174 GEIYLSKEGFKKLNEEREEMGLPTFANPRNAAAGSIRQLD-SKITAKRPLSTFMYALGYV 232 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 I E+L+ + GF VN ++ N F ++ Y K R +LPY+IDG+V KV Sbjct: 233 EGIEFNTHLEVLEFYKACGFKVNPHIKSFNNFDDVIDYCMSWKEKRHSLPYEIDGMVIKV 292 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + QK LG A++PRW I++KF +Q + + DI + +GRTG+LTP A L PV I G+ Sbjct: 293 NSLHFQKILGSTAKTPRWAIAYKFPAEQKISVIEDIVVSVGRTGVLTPNAVLTPVQIAGS 352 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATLHNEDYIK +DI +GD V+V++AG++IP+VV +I +R + + Sbjct: 353 TVSRATLHNEDYIK-----------EKDIHIGDSVIVQKAGDIIPEVVAVIKEKRTGNEK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P CP C S V+R G++ A+RCT G++C AQ R+ HF SRDA +I GL Sbjct: 402 EFKMPHRCPECGSEVIR----LPGEV--AYRCT-GVSCPAQIRRRIIHFASRDAMDIRGL 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + SE+ I+ +DI+ L++ ++ G+ S NL +I + Sbjct: 455 GPAIVSLLL-SEN---LIKDVSDIYFLKKEALIPLERM------GEKSANNLIKAIENSK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L R +++LGI +G++ + +L AQE ++ N + LI++P +GD Sbjct: 505 KQPLNRLVYALGIPLIGSKASLTL----------AQEFKSMDRLQNATYEELIKIPEIGD 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHK 665 +A++I+ F++ + A+ LKE ++ ++ + + +EN V TG L+K R K Sbjct: 555 KMAESIIAFFKQEQT-KALITRLKEAGVNMLYAKEEIGPKPLENLTFVLTGALEKYSRSK 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 AQE + LG V+ +S+KTD ++VG +PGSK KA +LGVKI++E+QF Sbjct: 614 AQELIENLGGKVTGSVSKKTDYVVVGKDPGSKYNKALELGVKILDEQQF 662 >gi|301022290|ref|ZP_07186186.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1] gi|300397609|gb|EFJ81147.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1] Length = 671 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/716 (35%), Positives = 409/716 (57%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYEMLQKMRCL-----GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ R L G PV++ V + ++++Y++++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A E +I L +VP VG Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + E+ + S K +V TG+L ++ Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 614 RDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|331653837|ref|ZP_08354838.1| DNA ligase, NAD-dependent [Escherichia coli M718] gi|331048686|gb|EGI20762.1| DNA ligase, NAD-dependent [Escherichia coli M718] Length = 671 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKSKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVYNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669 >gi|56479083|ref|YP_160672.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1] gi|81356392|sp|Q5NYU3|DNLJ_AZOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56315126|emb|CAI09771.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1] Length = 681 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 263/713 (36%), Positives = 383/713 (53%), Gaps = 59/713 (8%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + L +E+ HD YY P + D+EYD L R DA+ P+L P+ P ++GG Sbjct: 12 AQLRRELEAHDHAYYVLDAPTVPDAEYDRLFRELDALERRHPELLV---PDSPTRRVGGA 68 Query: 82 MNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQ-KKDDNSIFFTLEPKIDGTM 138 L V H++P LS+ E + F TR+ + + + E K DG Sbjct: 69 PVPGLVPVRHAVPMLSIRTETDTTSGGVIAFDTRVRNALELGPHAPPVEYLGELKFDGLA 128 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++RYE G V AA RGDG++GEDV+ +R I IP L P +IEVRGE+Y+ ++ F Sbjct: 129 ISLRYENGMLVRAATRGDGYTGEDVTHSVRTIRQIPLRLPGRPPALIEVRGEIYMRRDAF 188 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI----FAKG 253 LN G K + NPRNAA+G +R+L+ R L+FF +G G+ E Sbjct: 189 ERLNARQSETGGKVFVNPRNAAAGAVRQLDARIAARRPLSFFAYGFGEIGESGGWNMPAT 248 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q EML + LG PV A+ G++++++ + + R +LPYDIDG+VYKV+ F LQ+ Sbjct: 249 QGEMLDALDALGIPVCEHRVVASGPDGLIAFHDRIAAARDSLPYDIDGVVYKVNRFDLQR 308 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG R PRW ++HK+ ++ T L+DI+IQ+GRTG LTPVARL+PV +GG +TNATL Sbjct: 309 RLGFVTREPRWAVAHKYPAQEEITELVDIEIQVGRTGALTPVARLKPVFVGGVTVTNATL 368 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNE+ I+ R G + +GD+V+V+RAG+VIP++V +V R+ +PF P Sbjct: 369 HNEEEIQ---------RKG--LLIGDQVIVRRAGDVIPQIVAPVVERRNGSERPFVMPQT 417 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S + + A RC+GGL C AQ+ + L HF R A +IEGLG + +D Sbjct: 418 CPVCGSHAEKQPDE------AVTRCSGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVDQ 471 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + PAD++ L K+ N+ D S NL +I K R+ +L RF Sbjct: 472 LVDGG----IVSTPADLYRL------GLVKLANLPRMADKSAANLLAAIEKSRHATLARF 521 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR+VG AR LA+++ ++ A + D L +V VG I+A +I Sbjct: 522 IFALGIRNVGEATARELARHF----------GSLDALMDADIERLQQVADVGPIVAHSIA 571 Query: 614 EFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N +E L E P++ K V TG L + R A+ Sbjct: 572 GFFAEMHNREVIEQLRAAGVHWDEGVPAVA-----ADGPASGKTFVLTGALPTMSRDDAK 626 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G VS +S+KTD ++ G GSKL KAQ+LGV I++E+ LL+Q Sbjct: 627 ALIESHGGKVSGSVSKKTDYVVAGAEAGSKLAKAQELGVAILDEDGLRRLLEQ 679 >gi|293415682|ref|ZP_06658325.1| DNA ligase [Escherichia coli B185] gi|291433330|gb|EFF06309.1| DNA ligase [Escherichia coli B185] Length = 671 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|238912842|ref|ZP_04656679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 671 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/716 (35%), Positives = 407/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQY-----EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ E L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLERLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGINVIDEAEMIRLL 669 >gi|94499335|ref|ZP_01305873.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65] gi|94428967|gb|EAT13939.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65] Length = 694 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 264/711 (37%), Positives = 394/711 (55%), Gaps = 58/711 (8%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L E++ + YY P I D+EYD L + P+L + P + G Sbjct: 26 VAELRDELNRANHAYYVLDDPSIPDAEYDRLFHELKGLESKHPELLTKDSPTQRV----G 81 Query: 81 EMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 LS F+ V H +P LSL+ ++ +D+R F RI K +SI F EPK+DG + Sbjct: 82 ATPLSEFETVAHEVPMLSLDNAFDDQDMRDFNRRISERLTTK--SSIRFACEPKLDGIAV 139 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDF 198 ++ YE GK V AA RGDG GE+++ IR + ++P L N P ++EVRGEVY+ K F Sbjct: 140 SLLYENGKLVRAATRGDGAVGENITQNIRTVYSVPLTLMGNDHPPVLEVRGEVYMPKKGF 199 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAKGQYE 256 A N + G K + NPRNAA+G LR+L+ +R L F + +G+ E Sbjct: 200 EAFNVKARERGEKTFVNPRNAAAGSLRQLDSRITASRPLEFCCYSMGRVDGAELPTVHSE 259 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+K GF +N + G + YY + + R+ LPY+IDG+VYKVD+ LQ++LG Sbjct: 260 ILKKFSEWGFKINPEMAVVEGVEGCLDYYENLAAKRNDLPYEIDGIVYKVDDLKLQQRLG 319 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW I+ KF ++ T L I+ Q+GRTG +TPVARLEPV +GG ++NATLHN Sbjct: 320 FVSRAPRWAIARKFPAQEEMTLLKGIEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNM 379 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D ++ LDA R+GD V+++RAG+VIP+V ++ +R ++Q P CP+ Sbjct: 380 DEVERLDA-----------RIGDTVVIRRAGDVIPQVASVVKEKRPDNSQKIQLPDACPV 428 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V R G+ VA RCTGGL C+AQ+ E +KHF SR A +I+GLG + ++ Sbjct: 429 CDSHVER----VEGEAVA--RCTGGLVCAAQRKEAIKHFASRKAMDIDGLGDKIVEQLVD 482 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ D++ L+ S ++ GD S NL +I +N S +F+++ Sbjct: 483 EG----KIKSFVDLYKLKHEDIASLERM------GDKSAQNLLKAIEASKNTSFPKFLYA 532 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A +L +++L+ I ++ + D+ LI V VG I+A+ I+ F+ Sbjct: 533 LGIREVGVATANNLVQHFLT-------IRALVKASFDE---LIEVDDVGPIVAEHILNFF 582 Query: 617 QNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 P N ++ LL EV S+ E +S E V TGTL + R A+ Y+ Sbjct: 583 AEPHNQTIIDGLLNIGITWPEVK-SVSNSELPLSGET----YVVTGTLSAMGRENAKAYL 637 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 QLGA V+ +S+KT ++ G+ GSKL KAQ L V +++EEQFL LL ++ Sbjct: 638 QQLGAKVAGSVSKKTSALVAGEKAGSKLTKAQDLEVPVLDEEQFLSLLAEH 688 >gi|161612830|ref|YP_001586795.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|190359282|sp|A9N362|DNLJ_SALPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161362194|gb|ABX65962.1| hypothetical protein SPAB_00529 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 671 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/716 (35%), Positives = 407/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL CSAQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICSAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|208779663|ref|ZP_03247008.1| DNA ligase, NAD-dependent [Francisella novicida FTG] gi|208744624|gb|EDZ90923.1| DNA ligase, NAD-dependent [Francisella novicida FTG] Length = 678 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 269/728 (36%), Positives = 410/728 (56%), Gaps = 65/728 (8%) Query: 6 LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 + P E SI+ A+ EL + L +S Y+ KPII DS+YD L R + Sbjct: 1 MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 + P + N L+++GGE+ + H SL ++++E+LR F +I Sbjct: 61 VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + I EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P L+ Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169 Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236 N PE +EVRGE+ + K FL+LN+ M K +ANPRNAA+G +R L+ + R L Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229 Query: 237 NFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + +G+G S+ F + Q+E++Q ++ GF +++ + A F + Y+++M R+ Sbjct: 230 KLYSYGIGYFSKDFVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDGLV+KV+ LQ +G AR P+W +++KF ++ + +L+++ Q+GRTG +TP Sbjct: 290 LAYDIDGLVFKVNNIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITP 349 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVV 398 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + R DAQ P+ CP+C S + ++N + A +RCTGG C AQ ERLKH Sbjct: 399 KSLPQYRKSDAQMVEMPTNCPVCDS-AIENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSR A +I+ LG + ++ A I+ PADI+ L Q T ++ G S Sbjct: 453 FVSRKATDIDKLGAKLIEQLV----AANLIKYPADIYKLNFDQLTGLERM------GAKS 502 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 N+ DSI K + SL RFIF++GI+ +G + +LA ++ S ++F + Sbjct: 503 SQNVLDSIKKSKTPSLARFIFAIGIKDIGEVSSDALANHFGSLESF----------RDAK 552 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650 + LI + +G+I+A IV F+ + NI VE LL K +P H N S K Sbjct: 553 FEELIEINDIGEIMANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNES--FTGK 610 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+ + R + + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670 Query: 711 EEQFLFLL 718 E+ LL Sbjct: 671 EDNLKDLL 678 >gi|110642595|ref|YP_670325.1| NAD-dependent DNA ligase LigA [Escherichia coli 536] gi|191174600|ref|ZP_03036093.1| DNA ligase, NAD-dependent [Escherichia coli F11] gi|300997757|ref|ZP_07181842.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1] gi|306814500|ref|ZP_07448662.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101] gi|122958158|sp|Q0TF55|DNLJ_ECOL5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110344187|gb|ABG70424.1| DNA ligase [Escherichia coli 536] gi|190905126|gb|EDV64772.1| DNA ligase, NAD-dependent [Escherichia coli F11] gi|222034142|emb|CAP76883.1| DNA ligase [Escherichia coli LF82] gi|300304141|gb|EFJ58661.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1] gi|305851894|gb|EFM52346.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101] gi|312947007|gb|ADR27834.1| NAD-dependent DNA ligase LigA [Escherichia coli O83:H1 str. NRG 857C] gi|324011127|gb|EGB80346.1| DNA ligase, NAD-dependent [Escherichia coli MS 60-1] Length = 671 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 409/712 (57%), Gaps = 50/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F+ N + LL E I + + + S K +V TG+L ++ R A Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 618 KARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLHLL 669 >gi|157161876|ref|YP_001459194.1| NAD-dependent DNA ligase LigA [Escherichia coli HS] gi|253772690|ref|YP_003035521.1| NAD-dependent DNA ligase LigA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162394|ref|YP_003045502.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606] gi|297517308|ref|ZP_06935694.1| NAD-dependent DNA ligase LigA [Escherichia coli OP50] gi|300928569|ref|ZP_07144093.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1] gi|190359254|sp|A8A2Q7|DNLJ_ECOHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157067556|gb|ABV06811.1| DNA ligase, NAD-dependent [Escherichia coli HS] gi|242378018|emb|CAQ32789.1| DNA ligase [Escherichia coli BL21(DE3)] gi|253323734|gb|ACT28336.1| DNA ligase, NAD-dependent [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974295|gb|ACT39966.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606] gi|253978462|gb|ACT44132.1| NAD-dependent DNA ligase LigA [Escherichia coli BL21(DE3)] gi|300463441|gb|EFK26934.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1] gi|323961212|gb|EGB56824.1| DNA ligase [Escherichia coli H489] gi|323970900|gb|EGB66151.1| DNA ligase [Escherichia coli TA007] gi|332344237|gb|AEE57571.1| DNA ligase, NAD-dependent LigA [Escherichia coli UMNK88] Length = 671 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|323702801|ref|ZP_08114460.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574] gi|323532189|gb|EGB22069.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574] Length = 669 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 260/709 (36%), Positives = 400/709 (56%), Gaps = 54/709 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L +EI+YH+ YY P I D +YD L + + +A+P+L P+ P + Sbjct: 9 KARVEELRREINYHNHQYYVLDNPTITDGQYDQLVQELLRLENAYPELV---SPDSPTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ V H +P LSL ++ DLR+F R+ ++ + + LE KIDG Sbjct: 66 VGGEIQKGFTAVQHRVPMLSLSNAFSENDLREFDRRVRSNLPGEE---VEYVLELKIDGL 122 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE+G FV A RGDG GED++A +R I IP + +IP +EVRGE Y+ K Sbjct: 123 AISLWYEQGVFVRGATRGDGELGEDITANLRTIKAIPLRIKESIP-FLEVRGEAYMPKES 181 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F+ LN+ G +ANPRNAA+G LR+L+P +R L+ F++ +G Sbjct: 182 FVRLNEAREEAGEPLFANPRNAAAGSLRQLDPRVTASRNLSVFMYAIGHLEGANPGTHAR 241 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L ++ LGF VN + ++ ++ + R LPY IDGLV KV+ Q++LG Sbjct: 242 LLGWLKDLGFRVNQHYKLCKDIEEVIRQIDKWQEQRFELPYAIDGLVIKVNSLDQQQRLG 301 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF +QA + + DI I++GRTG+LTP A LEPV + G ++ ATLHNE Sbjct: 302 ATLKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTTVSKATLHNE 361 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +DIR+GD+ LV++AG++IP+VV + R +PF+ PS CP Sbjct: 362 DIIR-----------QKDIRIGDQALVQKAGDIIPEVVLVFPERRTGQEKPFTMPSTCPE 410 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VVR G+ AAHRCT C A E + HFVSR A +I GLG+ ++ Sbjct: 411 CNAPVVR----LPGE--AAHRCTNK-NCPAISREGIIHFVSRGAMDIMGLGESIVNQLIM 463 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A ++ PAD++ L+ K+E + G S NL ++I ++ SL + + + Sbjct: 464 ----AGLVQDPADLYDLKYE---DLIKLERM---GARSSQNLLNAIAASKHNSLAQLLVA 513 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG A+ LA+++ S ++ ++A +D L +P +G IA++IV+++ Sbjct: 514 LGIRHVGERAAKILARHFGS-------MSALMAATVED---LTVIPEIGPKIAESIVDYF 563 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQEYVT 671 P N ++ L + + E N +E + K V TGTL+ R +AQ + Sbjct: 564 ARPENKTLIQRLDRA---GVNMEEANQQAEPGQQPLAGKTFVITGTLEGFSRQEAQRAIE 620 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +LG VS +S+KTD ++VG+NPGSK +KAQQLG+ I+NE++F+ LL+Q Sbjct: 621 ELGGKVSGSVSKKTDYVVVGENPGSKYDKAQQLGIPILNEQEFVALLKQ 669 >gi|325496534|gb|EGC94393.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ECD227] Length = 671 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|218700877|ref|YP_002408506.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI39] gi|254781321|sp|B7NPU7|DNLJ_ECO7I RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218370863|emb|CAR18680.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39] Length = 671 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V K++ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKINSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|300923365|ref|ZP_07139409.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1] gi|300420362|gb|EFK03673.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1] Length = 671 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKGFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|325529285|gb|EGD06234.1| NAD-dependent DNA ligase [Burkholderia sp. TJI49] Length = 691 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 257/710 (36%), Positives = 396/710 (55%), Gaps = 52/710 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L + P+ P+ P ++GGE+ Sbjct: 20 LRDQLQQANYAYYVLDQPDLPDAEYDRLFAELQQLEADHPEFVT---PDSPTQRVGGEVA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + +D+ F R+ K D + + + E K DG Sbjct: 77 SGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKAVDLAGSVTDPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++RYE+G FV A+ RGDG +GEDV+ +R I +IP ++ ++P +++VRGEV + K Sbjct: 137 AISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGADVPAVLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G + + Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPMPDTH 256 Query: 256 E-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L LG PVN + G++ ++ ++ R LPYDIDG+VYKV+ Q + Sbjct: 257 SGLLDWYETLGLPVNRERAVVHGADGLLGFFRKVGEKRDGLPYDIDGVVYKVNRRDEQDR 316 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLH Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 376 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F P+ C Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTEC 425 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + +R PAD+F L + + F + S NL DS+ K ++ + RFI Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTRARFI 529 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIRHVG A+ LAK++ S ++ I+ + D+ L+ V VG I+A++I + Sbjct: 530 YGLGIRHVGESTAKDLAKHFGS-------LDPIMNASIDE---LLEVNDVGPIVAESIHQ 579 Query: 615 FYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N +E L K P K + K +V TGTL + R A+E + Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEMLE 639 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 GA V+ +S+KTD ++ G GSKL KA++LG+ +++EE LL+ + Sbjct: 640 AAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEEGLHQLLEGH 689 >gi|118497929|ref|YP_898979.1| DNA ligase [Francisella tularensis subsp. novicida U112] gi|194323151|ref|ZP_03056935.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida FTE] gi|166215758|sp|A0Q7L0|DNLJ_FRATN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118423835|gb|ABK90225.1| DNA ligase [Francisella novicida U112] gi|194322515|gb|EDX19995.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida FTE] Length = 678 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 269/728 (36%), Positives = 409/728 (56%), Gaps = 65/728 (8%) Query: 6 LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 + P E SI+ A+ EL + L +S Y+ KPII DS+YD L R + Sbjct: 1 MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 + P + N L+++GGE+ + H SL ++++E+LR F +I Sbjct: 61 VNDNPQF---KPINSVLDRVGGEVLAEFETIKHKKKMTSLANVFSLEELRDFYDKI---- 113 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + I EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P L+ Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169 Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236 N PE +EVRGE+ + K FL+LN+ M K +ANPRNAA+G +R L+ + R L Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229 Query: 237 NFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + +G+G S+ F + Q+E++Q ++ GF +++ + A F + Y+++M R+ Sbjct: 230 KLYSYGIGYFSKDFVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDGLV+KV+ LQ +G AR P+W +++KF ++ + +L+++ Q+GRTG +TP Sbjct: 290 LAYDIDGLVFKVNNIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITP 349 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +++NATLHN + IK +DIRVGDRV+V+RAG+VIP+VV Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVGDRVIVRRAGDVIPEVV 398 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + R DAQ P+ CP+C S + ++N + A +RCTGG C AQ ERLKH Sbjct: 399 KSLPQYRKSDAQMVEMPTNCPVCDS-AIENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSR A +I+ LG + ++ A I+ PADI+ L Q T ++ G S Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFDQLTGLERM------GAKS 502 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 N+ DSI K + SL RFIF++GI+ +G + LA ++ S ++F + Sbjct: 503 SQNVLDSIKKSKTPSLARFIFAIGIKDIGEVSSDVLANHFGSLESF----------RDAK 552 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650 + LI + +G+I+A IV F+ + NI VE LL K +P H N S K Sbjct: 553 FEELIEINDIGEIMANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNES--FTGK 610 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+ + R + + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670 Query: 711 EEQFLFLL 718 E+ LL Sbjct: 671 EDNLKDLL 678 >gi|157156100|ref|YP_001463741.1| NAD-dependent DNA ligase LigA [Escherichia coli E24377A] gi|193066723|ref|ZP_03047750.1| DNA ligase, NAD-dependent [Escherichia coli E22] gi|194430461|ref|ZP_03062941.1| DNA ligase, NAD-dependent [Escherichia coli B171] gi|209919893|ref|YP_002293977.1| NAD-dependent DNA ligase LigA [Escherichia coli SE11] gi|218554944|ref|YP_002387857.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI1] gi|218696047|ref|YP_002403714.1| NAD-dependent DNA ligase LigA [Escherichia coli 55989] gi|256017438|ref|ZP_05431303.1| NAD-dependent DNA ligase LigA [Shigella sp. D9] gi|260845052|ref|YP_003222830.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str. 12009] gi|260856513|ref|YP_003230404.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str. 11368] gi|260869108|ref|YP_003235510.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str. 11128] gi|293446772|ref|ZP_06663194.1| DNA ligase [Escherichia coli B088] gi|300817349|ref|ZP_07097566.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1] gi|300820921|ref|ZP_07101071.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7] gi|300903139|ref|ZP_07121073.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1] gi|300921341|ref|ZP_07137704.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1] gi|301306250|ref|ZP_07212323.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1] gi|301328910|ref|ZP_07221944.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1] gi|307312589|ref|ZP_07592222.1| DNA ligase, NAD-dependent [Escherichia coli W] gi|309794543|ref|ZP_07688966.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7] gi|331669152|ref|ZP_08370000.1| DNA ligase, NAD-dependent [Escherichia coli TA271] gi|331678399|ref|ZP_08379074.1| DNA ligase, NAD-dependent [Escherichia coli H591] gi|332278439|ref|ZP_08390852.1| NAD-dependent DNA ligase LigA [Shigella sp. D9] gi|190359253|sp|A7ZPL2|DNLJ_ECO24 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781319|sp|B7LCF6|DNLJ_ECO55 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781323|sp|B7M6S1|DNLJ_ECO8A RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781327|sp|B6I4Y8|DNLJ_ECOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157078130|gb|ABV17838.1| DNA ligase, NAD-dependent [Escherichia coli E24377A] gi|192925627|gb|EDV80294.1| DNA ligase, NAD-dependent [Escherichia coli E22] gi|194411494|gb|EDX27836.1| DNA ligase, NAD-dependent [Escherichia coli B171] gi|209913152|dbj|BAG78226.1| DNA ligase [Escherichia coli SE11] gi|218352779|emb|CAU98567.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989] gi|218361712|emb|CAQ99309.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1] gi|257755162|dbj|BAI26664.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str. 11368] gi|257760199|dbj|BAI31696.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str. 12009] gi|257765464|dbj|BAI36959.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str. 11128] gi|291323602|gb|EFE63030.1| DNA ligase [Escherichia coli B088] gi|300404835|gb|EFJ88373.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1] gi|300411729|gb|EFJ95039.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1] gi|300526674|gb|EFK47743.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7] gi|300529975|gb|EFK51037.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1] gi|300838493|gb|EFK66253.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1] gi|300844712|gb|EFK72472.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1] gi|306907512|gb|EFN38016.1| DNA ligase, NAD-dependent [Escherichia coli W] gi|308121999|gb|EFO59261.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7] gi|315061736|gb|ADT76063.1| DNA ligase, NAD(+)-dependent [Escherichia coli W] gi|315256427|gb|EFU36395.1| DNA ligase, NAD-dependent [Escherichia coli MS 85-1] gi|320199974|gb|EFW74563.1| DNA ligase [Escherichia coli EC4100B] gi|323156318|gb|EFZ42476.1| DNA ligase, NAD-dependent [Escherichia coli EPECa14] gi|323159458|gb|EFZ45441.1| DNA ligase, NAD-dependent [Escherichia coli E128010] gi|323177463|gb|EFZ63051.1| DNA ligase, NAD-dependent [Escherichia coli 1180] gi|323184284|gb|EFZ69660.1| DNA ligase, NAD-dependent [Escherichia coli 1357] gi|323377683|gb|ADX49951.1| DNA ligase, NAD-dependent [Escherichia coli KO11] gi|323944634|gb|EGB40701.1| DNA ligase [Escherichia coli H120] gi|324020175|gb|EGB89394.1| DNA ligase, NAD-dependent [Escherichia coli MS 117-3] gi|324118125|gb|EGC12023.1| DNA ligase [Escherichia coli E1167] gi|331064346|gb|EGI36257.1| DNA ligase, NAD-dependent [Escherichia coli TA271] gi|331074859|gb|EGI46179.1| DNA ligase, NAD-dependent [Escherichia coli H591] gi|332100791|gb|EGJ04137.1| NAD-dependent DNA ligase LigA [Shigella sp. D9] Length = 671 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|323188282|gb|EFZ73575.1| DNA ligase, NAD-dependent [Escherichia coli RN587/1] Length = 671 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 251/715 (35%), Positives = 407/715 (56%), Gaps = 56/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G Sbjct: 292 NSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A E +I L +VP VG Sbjct: 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++A + F+ N + LL E I + + + S K +V TG+L ++ R Sbjct: 555 VVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSR 614 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|300724062|ref|YP_003713378.1| DNA ligase [Xenorhabdus nematophila ATCC 19061] gi|297630595|emb|CBJ91260.1| DNA ligase [Xenorhabdus nematophila ATCC 19061] Length = 658 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 247/704 (35%), Positives = 394/704 (55%), Gaps = 57/704 (8%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 + +H+ Y+ P I D+EYD L R A+ P+ ++ P +IG + Sbjct: 1 MRHHEYLYHVMDAPEIPDAEYDRLMRELKALEEQHPEWVTADSPT---QRIGATPLSAFE 57 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 +V H IP LSL+ +++ E F R+ + KD F E K+DG +++ YE G+ Sbjct: 58 QVRHEIPMLSLDNVFDEESYLAFDKRVRD--RLKDSQDWVFCCELKLDGLAVSLLYENGE 115 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 V AA RGDG +GE+++A +R I IP R+ NIP +E+RGEV+I + F LN+E Sbjct: 116 LVQAATRGDGTTGENITANVRTIHAIPLRLKGENIPARVEIRGEVFIKQTGFEKLNEEAR 175 Query: 207 AVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG-KTSEIFAKGQYEMLQKMRCL 264 G K +ANPRNAA+G LR+L+P R L F+ +G+G + Y L + + Sbjct: 176 RTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGIGVQEGGALPASHYARLMQFKEW 235 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 G PV++ V+ ++ +Y +++ R TL +DIDG+V KVD LQ++LG A++PRW Sbjct: 236 GLPVSDKVKLCLGTQQVIDFYQDIEQQRPTLGFDIDGVVVKVDSLELQERLGFVAKAPRW 295 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 + KF ++ T + D++ Q+GRTG +TPVARLEPV++ G ++NATLHN D I+ L Sbjct: 296 ATAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVSVAGVTVSNATLHNADEIERL-- 353 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 +R+GD V+++RAG+VIP+VV +I R ++ FP CP+C S D Sbjct: 354 ---------GLRIGDTVIIRRAGDVIPQVVGVIHERRPAESLEVIFPQHCPVCGS----D 400 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 + G+ VA RCTGGL C AQ+ E L+HFVSR A +++G+G++ ++ E + Sbjct: 401 IERVEGEAVA--RCTGGLFCGAQRKEALRHFVSRRAMDVDGMGEKIIEQLVDKE----YV 454 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 + PAD+F L + K+ + G S N+ +++ K R + RFI+SLGIR VG Sbjct: 455 KTPADLFRL------TAGKLTGLERMGPKSAQNVINALEKARKTTFARFIYSLGIREVGE 508 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 A +L ++ + + D +LI V VG I+A +V F+ P N Sbjct: 509 TTAANLVSHFGTLEKL----------QAADTEALIAVQDVGGIVASHVVNFFNEPHNQAV 558 Query: 625 VEALLKEV--------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++ L+ + SP++G + K +V TG+L ++ R +A++ + LGA Sbjct: 559 IDDLVNNIGIHWESAESPNLG----EIDGPFAGKTVVLTGSLNRLSRDEAKDKLAALGAK 614 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+KTD++I G+ GSKL KA +LG+ +++E++ + LL++ Sbjct: 615 VTGSVSKKTDLVIAGEAAGSKLAKANELGIPVIDEDEMIRLLRE 658 >gi|291483102|dbj|BAI84177.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. natto BEST195] Length = 668 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 408/712 (57%), Gaps = 53/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A++ L + I+ + YY +P + D+EYD L + AI PDL P+ P Sbjct: 4 ETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTPDSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + + KVTH P LSL +N +DLR F R+ ++ + + + +E KI Sbjct: 61 TQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRV----RQAVGDDVAYNVELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I IP L +N IEVRGE Y+ Sbjct: 117 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIP--LKMNRELSIEVRGEAYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F ALN+E I +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ + Sbjct: 175 KRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + L + LGF N ++ +++ +E+++ R+ LPY+IDG+V KVD Q+ Sbjct: 235 QSQGLDFLDELGFKTNQERKKCGDIEEVITLIDELQAKRADLPYEIDGIVIKVDSLDQQE 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+L Sbjct: 295 ELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED IK +DIR+ D+V+VK+AG++IP+VV+++V +R + + FS P+ Sbjct: 355 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSMPTE 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 404 CPECGSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ +R AD++ L + + ++ G+ S NL SI K + SLER Sbjct: 457 LFEEN----LVRNVADLYKLTKERVIQLERM------GEKSTENLISSIQKSKENSLERL 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR +G++ A++LA ++ S +N + L+ V +G+ +A A++ Sbjct: 507 LFGLGIRFIGSKAAKTLAMHFESLENLKKASKE----------ELLAVDEIGEKMADAVI 556 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668 ++ + + L + ++ + K V +E K +V TG L+++ R++A+ Sbjct: 557 TYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKA 616 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LG ++ +S+ TD++I G+ GSKL KAQ+L +++ NEEQ + L++ Sbjct: 617 QIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668 >gi|262373317|ref|ZP_06066596.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205] gi|262313342|gb|EEY94427.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205] Length = 677 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 266/717 (37%), Positives = 404/717 (56%), Gaps = 59/717 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ R+ L Q I+ H+ YY +P I DSEYD L + A+ +P+ +++ P Sbjct: 7 IEQMRQ----LIQLIAKHNHAYYVMDQPTITDSEYDHLFHQLKALEQQYPEFMQADTPT- 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 NK+GG+ VTH++P LSL ++N +DL F RI ++ + + + +E K Sbjct: 62 --NKVGGQALSKFESVTHAVPMLSLGNVFNQDDLFAFARRID---ERLPNQKVQYEVELK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGE 190 +DG I++ YE G + RGDG +GED++ ++ I +P++LS IP+++EVRGE Sbjct: 117 LDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKILSSQHQAIPQLLEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V + K+ F LN + A G K ANPRNAA+G LR+L+P +R L F+ +G+ + Sbjct: 177 VLMPKSGFEKLNADQEAKGEKTLANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPH 236 Query: 250 FA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ L + GF + + + Y +++ R L +IDG+V KVD+ Sbjct: 237 HGLTTMHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQLERPNLKVEIDGMVVKVDD 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+QLG +R PRW ++KF + A T++ +ID Q+GRTG LTPVARL PV +GG + Sbjct: 297 LKQQQQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLAPVFVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +N TLHN I L D+RVGD V V R G+VIPKV + R DA+ Sbjct: 357 SNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVERVWAEFRPADAELV 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGLG Sbjct: 406 YLPTNCPVCDSPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGD 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + +R ADI+ L ++ K+ +I G+ SV NL D+I+ + Sbjct: 460 RWVESLLHLD----LLRDVADIYHLHEHRE----KLLSIEKMGEKSVQNLIDAIDASKKT 511 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGIR VG AR LA ++Q F + + A N D +L + P VGDI Sbjct: 512 TLARFIYALGIRGVGETTARMLAN---TFQTF----DALKAANID---ALKKTPDVGDIT 561 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664 A+ IV+F+Q N+ +E LL + G H ++ + + V TGTL+ + R Sbjct: 562 AEWIVDFFQAEHNLEVLERLL-----AAGIHWDAPTAPTRQPLNGESWVVTGTLESMGRD 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 +A + + LGA VS +S KT ++ G+ GSKL+KAQ+L +++MNE++FL L QY Sbjct: 617 EATQRLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAQKLDIRVMNEQEFLDFLAQY 673 >gi|170703080|ref|ZP_02893902.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10] gi|170132009|gb|EDT00515.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10] Length = 691 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 258/712 (36%), Positives = 396/712 (55%), Gaps = 60/712 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L + PDL P+ P ++GGE+ Sbjct: 20 LRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLVT---PDSPTQRVGGEVA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL + ED+ F R+ K D + + + E K DG Sbjct: 77 GGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++RYE G FV A+ RGDG +GEDV+ +R I +IP ++ ++P +++VRGEV + K Sbjct: 137 AISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254 DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G + Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMPMPDTH 256 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L G PVN G++ ++ ++ R +LPYDIDG+VYKV+ Q + Sbjct: 257 SALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVNRRDEQDR 316 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLH Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 376 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA F P+ C Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFVMPTEC 425 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + +R PAD+F L + + F + S NL DS+ K ++ +L RFI Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFI 529 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIRHVG A+ LAK++ S + I+ + ++ L+ V VG I+A++I + Sbjct: 530 YGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGPIVAESIHQ 579 Query: 615 FYQNPRNICAVEAL-------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N +E L E P+ K + K +V TGTL + R A+ Sbjct: 580 FFAEEHNRTVIEQLRAPGKVTWAEGPPA----PKAPQGVLAGKTVVLTGTLPNLTRDAAK 635 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E++ LL+ Sbjct: 636 EMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEDELHQLLE 687 >gi|331648073|ref|ZP_08349163.1| DNA ligase, NAD-dependent [Escherichia coli M605] gi|331042933|gb|EGI15073.1| DNA ligase, NAD-dependent [Escherichia coli M605] Length = 671 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E P I E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPEPIIINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|323495433|ref|ZP_08100510.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546] gi|323310356|gb|EGA63543.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546] Length = 669 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 262/711 (36%), Positives = 403/711 (56%), Gaps = 51/711 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q +++L+ L + + YH YY P I D+EYD L R I P+L + P+ Sbjct: 3 QQIQEKLNQLRESLHYHGVKYYVEDSPEIPDAEYDRLMRELMEIEAQHPELVSLDSPS-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPK 133 ++GG V H IP LSL+ ++ +L F R+ R K D F EPK Sbjct: 61 -QRVGGAPLDGFDSVRHEIPMLSLDNAFDDSELDAFHKRMSDRLSGTKLD---VFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ Y G FV AA RGDG +GE+++ +R I IP ++ PE +EVRGEV+ Sbjct: 117 LDGLAVSLLYVNGVFVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPERLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEI 249 + K F LN++ + G K + NPRNAA+G LR+L+ + IT R L+F+ + +G Sbjct: 177 MPKEGFDKLNEQALKKGEKVFVNPRNAAAGSLRQLD-SRITAKRPLSFYAYSVGVVEGAT 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ YE +++ G P+ R + +YY ++ + R LPY+IDG+V KVD Sbjct: 236 LSESHYERFLQLKGWGLPMCPETRLVANLEEVKAYYQDILTRRDALPYEIDGVVIKVDSI 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++ Sbjct: 296 AAQEQLGFVARAPRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L + VGD V+++RAG+VIP++V I+ + R +A+ Sbjct: 356 NATLHNADEIERL-----------GVMVGDCVVIRRAGDVIPQIVSIVSDRRPENAREIV 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RC+GGL C AQ+ E LKHFVSR A +++GLG++ Sbjct: 405 FPTNCPVCNSAVER----VEGEAVA--RCSGGLVCQAQRKEALKHFVSRKALDVDGLGEK 458 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E + PAD+F L S I + G S N+ D++ K + + Sbjct: 459 VIEQLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALVKAKETT 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF++SLGIR VG A +LAK++ + + + A ++DD LI V +G I+A Sbjct: 509 LPRFLYSLGIREVGEATAANLAKHF-------KTLEAVQAASHDD---LIEVQDIGAIVA 558 Query: 610 QAIVEFYQNPRNICAVEAL-LKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I F+ +N ++ L ++ V P I +++ + K +V TG+L ++ R A+ Sbjct: 559 SHITAFFAQDKNQMVIDDLRVQGVHWPDIEEKDQDAPQPLAGKVVVLTGSLSQLTRSDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI+ G+N GSKL KAQ LG++I EE + L+ Sbjct: 619 AALEGLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIRTEEDLIALM 669 >gi|15802944|ref|NP_288973.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 EDL933] gi|12516784|gb|AAG57530.1|AE005471_7 DNA ligase [Escherichia coli O157:H7 str. EDL933] Length = 671 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 408/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y + R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYXXXEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP++CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTYCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWXAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|253999028|ref|YP_003051091.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4] gi|253985707|gb|ACT50564.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4] Length = 699 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 264/724 (36%), Positives = 390/724 (53%), Gaps = 64/724 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L ++I+ ++ YY P + DSEYD L R A+ HA P+L P+ P ++G Sbjct: 27 QIRQLREQINLYNYQYYVLDDPSVPDSEYDRLFRELQALEHAHPELLT---PDSPTQRVG 83 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + V H LSL + +L F RI + + +EPK DG I Sbjct: 84 ASPLKAFASVQHRQAMLSLNNAFEEGELTAFDKRIRDALGIA---QVEYAVEPKFDGLAI 140 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 T+ YE G FV A RGDG++GEDVS+ +R I IP L + N P +IEVRGEV + K DF Sbjct: 141 TLTYENGLFVQGATRGDGYTGEDVSSNLRTIRAIPMRLPVENPPALIEVRGEVLMLKRDF 200 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 LN + G K +ANPRNAA+G LR+L+P TR L FF +GLG + + Sbjct: 201 DKLNRQQAERGEKLFANPRNAAAGSLRQLDPAITATRPLMFFAYGLGIAEGVPQLSTHAA 260 Query: 258 -LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + + L PV++ G++ YY + + R LP+DIDG+VYKV+ + Q +LG Sbjct: 261 AMDYLASLRLPVSDQRDTVQGLAGLLDYYTRIGAARPNLPFDIDGVVYKVNSIAQQNELG 320 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW ++HKF ++A T + ID+Q+GRTG +TPVARL+PV +GG +TNATLHN+ Sbjct: 321 FVSRAPRWAVAHKFPAQEALTEIQAIDVQVGRTGAITPVARLKPVFVGGVTVTNATLHNQ 380 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF----SFPS 432 D I +D+RVGD V V+RAG+VIP+VV +++ +R D + + Sbjct: 381 DEID-----------RKDVRVGDTVSVRRAGDVIPEVVAVVLEKRPADTVAYRLLEAINH 429 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S V+R + A RCTGGL CSAQ+ + + HF SR A +IEGLG++ +D Sbjct: 430 QCPVCGSHVIRQEDE------AVARCTGGLFCSAQRKQAVLHFASRRAIDIEGLGEKLVD 483 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 I ADI+ L +S ++ + S N+ +++ + +L R Sbjct: 484 QLVDGA----HIHTLADIYRLDLATLSSLDRM------AEKSAKNIIKALDASKATTLAR 533 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI++LGIR+VG A+ LA+Y+ S Q D L +VP VG I+A++I Sbjct: 534 FIYALGIRNVGEATAKDLARYFGSLQALLAA----------DIEQLQQVPDVGPIVAESI 583 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKIQRHKA 666 +F P N ++ L +G H + K LV TGTL + R +A Sbjct: 584 RQFLSEPHNQQVIQDL-----QDVGLHWTESDGAGTQQGVLTGKTLVLTGTLPTMSRDQA 638 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 + + G V+ +S+KTD ++ G+ GSKL KAQ+LGV +++E L LL+ ++ Sbjct: 639 KALIEAAGGKVAGSVSKKTDFVVAGEEAGSKLTKAQELGVAVLDENGLLALLEDKQSS-- 696 Query: 727 IHDD 730 HDD Sbjct: 697 -HDD 699 >gi|146615|gb|AAA24071.1| lig peptide [Escherichia coli] Length = 671 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLARFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|254371060|ref|ZP_04987062.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|151569300|gb|EDN34954.1| hypothetical protein FTBG_00816 [Francisella tularensis subsp. tularensis FSC033] Length = 643 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 258/692 (37%), Positives = 396/692 (57%), Gaps = 58/692 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 Y+ KPII DS+YD L R + + P + N L+++GGE+ + H Sbjct: 2 YHTLDKPIISDSDYDKLFRLLQDLVNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKK 58 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL ++++E+LR F +I + I EPK+DG I+I Y+ GKF YA R Sbjct: 59 MTSLANVFSLEELRDFYDKI--------EYDIELECEPKMDGLAISIFYKNGKFDYAVTR 110 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 GDG GE VS ++ I +P L+ N PE +EVRGE+ + K FL+LN+ M K + Sbjct: 111 GDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTF 170 Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNN 270 ANPRNAA+G +R L+ + R L + +G+G S+ ++ + Q+E++Q ++ GF +++ Sbjct: 171 ANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFSKDFVYPETQFELMQLLQSFGFTISD 230 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 + A F + Y+++M R+ L YDIDGLV+KV+ LQ +G AR P+W I++KF Sbjct: 231 NMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFKVNNIKLQDTIGYTARGPKWAIAYKF 290 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 ++ + +L+++ Q+GRTG +TPVARL+PV +GG +++NATLHN + IK Sbjct: 291 PAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGGVIVSNATLHNINEIK---------- 340 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 +DIRVGDRV+V+RAG+VIP+VV + R DAQ P+ CP+C S+ + ++N + Sbjct: 341 -RKDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQMVEMPTNCPVCDSK-IENVNDQ-- 396 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 A +RCTGG C AQ ERLKHFVSR A +I+ LG + ++ A I+ PADI Sbjct: 397 ---AIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLV----AANLIKYPADI 449 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + L Q T ++ S N+ DSI K + SL RFIF++GI+ +G + +L Sbjct: 450 YKLNFEQLTGLERM------AAKSSQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDAL 503 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL- 629 A ++ S ++F + + LI + +G+I+A IV F+ + NI VE L Sbjct: 504 ANHFGSLESF----------RDAKFEELIEINDIGEIMANNIVSFWHDSLNIKIVEEFLA 553 Query: 630 ---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 K +P H N S K +V TG+ + R + + + +GA V++ +S+KTD Sbjct: 554 IGIKIQNPVKVEHAYNES--FTGKTVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTD 611 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++I GDN GSKL KAQ+LGV+++ E+ LL Sbjct: 612 MVICGDNAGSKLTKAQELGVEVILEDNLKDLL 643 >gi|257454409|ref|ZP_05619671.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60] gi|257448175|gb|EEV23156.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60] Length = 675 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 268/715 (37%), Positives = 401/715 (56%), Gaps = 59/715 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q RK ++ L+Q H+ YY P++ DSEYD L++ A+ A+P L +S+ P Sbjct: 11 QMRKLIAQLKQ----HNHAYYVLDNPLLEDSEYDQLRQELVALETAYPQLVQSDSPT--- 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 N++G + +VTH IP LSL ++ +DL+ F+ R+ N + +E K+D Sbjct: 64 NQVGDKPLPFFTQVTHQIPMLSLGNLFTFDDLQNFMRRVNDRLADNQQNP-EYEVELKLD 122 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++ Y+ G+F A RGDG +GED++ +R I +P L+++IP + EVRGEV + K Sbjct: 123 GLAVSLLYQNGQFTQAVTRGDGQTGEDITQNVRTIRNLPLQLAIDIPRL-EVRGEVLMPK 181 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN + A G K +ANPRNAA+G LR+L+P +R L F+ + + + Q Sbjct: 182 AGFAKLNRDAQAKGEKTFANPRNAAAGSLRQLDPNIAKSRPLAFYAYSVNQGLPAEITTQ 241 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + L ++ LGF +++ ++ T + +YY + RS LP++IDG V KV+ +LQ+Q Sbjct: 242 SDALFWLKALGFSISD-IKIVQTAAQLQAYYQAVIEKRSHLPFEIDGTVIKVNSLALQEQ 300 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R PRW ++KF + TRL I+ Q+GRTG LTPV +LEPVN+GG ++N TLH Sbjct: 301 LGFLSREPRWATAYKFPAETVMTRLNAIEWQVGRTGQLTPVGKLEPVNVGGVTVSNVTLH 360 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ L DIR GD V V RAG+VIPKV + +ER +AQ S P+ C Sbjct: 361 NIGEIQRL-----------DIRAGDMVSVHRAGDVIPKVTRVWTDERPANAQVVSLPTHC 409 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V+ G+ +A RCTGGL C AQQ E L HFVSR A +I+GLG++ L F Sbjct: 410 PVCDSPVIM----PEGEALA--RCTGGLFCPAQQQEALIHFVSRKAMDIDGLGERWLINF 463 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ ++ ADI+ L + + + N+ G+ SV N+ +I K ++ +L RFI Sbjct: 464 FEQG----IVKNVADIYALSKHRDA----LINLEKLGEKSVENMLAAIEKSKDTTLPRFI 515 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 F+LGI VG A +LA + Q A I +L + P VG+ A +I Sbjct: 516 FALGIGGVGESTAMNLAMQFGDLQPLMAASIE-----------ALQKTPDVGEKTADSIF 564 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVS------SEIENKKLVFTGTLQKIQRHKAQ 667 EF++ NI + LL+ G H + VS ++ + V TGTL+ + R +A+ Sbjct: 565 EFFRAEHNIEVINRLLQA-----GIHWQPVSQVPEGNQPLKGQSWVITGTLESMGRDEAK 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + LGA VS +S KT ++ G+ GSKL A++LGVK++ E QF LL Y+ Sbjct: 620 AKLQALGAKVSGSVSAKTTALLAGEKAGSKLANAEKLGVKVVTEAQFTDLLNTYH 674 >gi|332092973|gb|EGI98039.1| DNA ligase, NAD-dependent [Shigella boydii 3594-74] Length = 671 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|301648064|ref|ZP_07247828.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1] gi|307139053|ref|ZP_07498409.1| NAD-dependent DNA ligase LigA [Escherichia coli H736] gi|331643032|ref|ZP_08344167.1| DNA ligase, NAD-dependent [Escherichia coli H736] gi|301073835|gb|EFK88641.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1] gi|331039830|gb|EGI12050.1| DNA ligase, NAD-dependent [Escherichia coli H736] Length = 671 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/713 (35%), Positives = 412/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K ++NPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFSNPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|26248787|ref|NP_754827.1| NAD-dependent DNA ligase LigA [Escherichia coli CFT073] gi|170680446|ref|YP_001744602.1| NAD-dependent DNA ligase LigA [Escherichia coli SMS-3-5] gi|227887457|ref|ZP_04005262.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972] gi|300981618|ref|ZP_07175608.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1] gi|301046300|ref|ZP_07193464.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1] gi|81475373|sp|Q8FFC1|DNLJ_ECOL6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781328|sp|B1LMK5|DNLJ_ECOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|26109193|gb|AAN81395.1|AE016764_77 DNA ligase [Escherichia coli CFT073] gi|170518164|gb|ACB16342.1| DNA ligase, NAD-dependent [Escherichia coli SMS-3-5] gi|227835807|gb|EEJ46273.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972] gi|300301715|gb|EFJ58100.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1] gi|300408962|gb|EFJ92500.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1] gi|307554453|gb|ADN47228.1| DNA ligase [Escherichia coli ABU 83972] gi|315293473|gb|EFU52825.1| DNA ligase, NAD-dependent [Escherichia coli MS 153-1] gi|323977408|gb|EGB72494.1| DNA ligase [Escherichia coli TW10509] Length = 671 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 409/712 (57%), Gaps = 50/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F+ N + LL E I + + + S K +V TG+L ++ R A Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 618 KARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|330912204|gb|EGH40714.1| DNA ligase [Escherichia coli AA86] Length = 671 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E P I E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPEPIIINVEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|209764254|gb|ACI80439.1| DNA ligase [Escherichia coli] Length = 671 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/713 (35%), Positives = 411/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP++CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTYCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIEQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|171322051|ref|ZP_02910925.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5] gi|171092642|gb|EDT37943.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5] Length = 691 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 258/716 (36%), Positives = 395/716 (55%), Gaps = 52/716 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q + L ++ + YY +P + D+EYD L + P+L P+ P Sbjct: 12 QPEARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPELVT---PDSPT 68 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFT 129 ++GGE+ V H P LSL + ED+ F R+ K D + + Sbjct: 69 QRVGGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALNKTTDLAGSVTEPVEYA 128 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188 E K DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP ++ ++P +++VR Sbjct: 129 CELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVR 188 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV + K DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G Sbjct: 189 GEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLD 248 Query: 248 EI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + +L G PVN G++ ++ ++ R +LPYDIDG+VYKV Sbjct: 249 GVPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKV 308 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA Sbjct: 309 NRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGA 368 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA Sbjct: 369 TVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAA 417 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P+ CP+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GL Sbjct: 418 EFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGL 471 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ +D + +R PAD+F L + + F + S NL DS+ K + Sbjct: 472 GEKIIDQLVELS----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAK 521 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFI+ LGIRHVG A+ LAK++ S + I+ + ++ L+ V VG Sbjct: 522 HTTLARFIYGLGIRHVGESTAKDLAKHFGS-------LTPIMDASIEE---LLEVNDVGP 571 Query: 607 IIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 I+A++I +F+ N +E L K P K + K +V TGTL + R Sbjct: 572 IVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLTR 631 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E+ LL+ Sbjct: 632 DAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|119472555|ref|ZP_01614603.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7] gi|119444879|gb|EAW26179.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7] Length = 672 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/713 (35%), Positives = 407/713 (57%), Gaps = 57/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++++ L + H+ YY P I D+EYD L R A+ P+ ++ P K+ Sbjct: 7 EQINHLRTLLEQHNYNYYVLDTPSIPDAEYDRLLRELSALETQNPEFLSADSPT---QKV 63 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG +V H +P LSL+ ++ ++ F RI D+ + F EPK+DG Sbjct: 64 GGAALSKFEQVAHQVPMLSLDNAFSEDEFTGFNRRIKERLMSIDE--LTFCCEPKLDGLA 121 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++I Y G V AA RGDG +GE+++ ++ I +P L + P+ +EVRGEV++ F Sbjct: 122 VSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEVFMDSAGF 181 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE-IFAKGQY 255 LN+E G K + NPRNAA+G LR+L+ + IT R L F+ + G ++ + + Sbjct: 182 EKLNNEAQKRGEKVFVNPRNAAAGSLRQLD-SKITAKRPLMFYAYSTGLVADGSIPEDHF 240 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + L+K+ G P+ + + YY+++ + RS L Y+IDG+V KV++ +LQ++L Sbjct: 241 QQLEKLTDWGLPLCPETKLVEGPQAALDYYDDILTRRSELKYEIDGVVIKVNKKALQERL 300 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G AR+PRW I++KF ++ T+LLD++ Q+GRTG +TPVARLEPV +GG ++NATLHN Sbjct: 301 GFVARAPRWAIAYKFPAQEEVTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHN 360 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I L ++VGD V+++RAG+VIP++ +++ R DA+ FPS CP Sbjct: 361 GDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPTDARDIVFPSACP 409 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 IC S V + G+ VA RCTGGL C AQ+ + +KHF SR A +I+GLG + +D Sbjct: 410 ICDSHVEK----VEGEAVA--RCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLV 463 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 E I+ PAD+F L++ E++ G S NL ++N+ + +L +F++ Sbjct: 464 DRE----LIKTPADLFILKQGH------FESLERMGPKSAKNLVTALNEAKATTLAKFLY 513 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 SLGIR G A++LA ++L+ + NII+ + + SL +V VGDI+A + F Sbjct: 514 SLGIREAGEATAQNLANHFLT-------LENIISASVE---SLTQVSDVGDIVASHVRGF 563 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK------LVFTGTLQKIQRHKAQEY 669 + N+ V AL+++ G H +S+ E+++ V TGTL + R+ A+ Sbjct: 564 FDEEHNLAVVNALIEQ-----GVHWPALSAPSEDEQPLAGLTYVLTGTLNTLNRNDAKAR 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + QLGA VS +S KTD ++ G+ GSKL KAQ LG+ ++ E+ + LL+++N Sbjct: 619 LQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEDGLIELLEKHN 671 >gi|260769097|ref|ZP_05878031.1| DNA ligase [Vibrio furnissii CIP 102972] gi|260617127|gb|EEX42312.1| DNA ligase [Vibrio furnissii CIP 102972] Length = 669 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 259/719 (36%), Positives = 407/719 (56%), Gaps = 63/719 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L+ L+ + YH YY P I D+EYD L R + P+L P+ Sbjct: 1 MQNVEQRLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEAQHPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEP 132 P ++GG +VTH IP LSL+ ++ ++L F R+ R K + F EP Sbjct: 58 PSQRVGGAPLAGFEQVTHEIPMLSLDNAFDDDELNSFHRRMGDRVLAAK---TAKFCCEP 114 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG +++ Y G V AA RGDG +GE+++ +R I +IP R+ P IEVRGEV Sbjct: 115 KLDGLAVSLLYVDGVLVQAATRGDGTTGENITENVRTIKSIPLRLQGTGWPTRIEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SE 248 ++ K F +N E + G K + NPRNAA+G LR+L+ + IT R L F+ + +G Sbjct: 175 FMPKAGFEKMNAEALKKGEKVFVNPRNAAAGSLRQLD-SRITAKRPLAFYAYSVGVIQGG 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 YE +++ G P++ ++ + + +YY ++ + RS LPY+IDG+V KVD+ Sbjct: 234 TLVDSHYERFLQLKGWGLPMSPETKRVESLDEVKAYYQDIMTRRSELPYEIDGVVIKVDD 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 294 IALQEQLGFVARAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQP 427 +NATLHN D I+ L +++GD V+++RAG+VIP++V +VNE P+ A+ Sbjct: 354 SNATLHNADEIERL-----------GVKIGDTVVIRRAGDVIPQIVS-VVNELRPETARE 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 FP+ CP+CQS V R G+ VA RC+GGL C AQ+ E LKHFVSR A +++GLG Sbjct: 402 ILFPAQCPVCQSDVER----VEGEAVA--RCSGGLVCQAQRKEALKHFVSRKALDVDGLG 455 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E + PAD+F L+ + T ++ G S N+ +++N + Sbjct: 456 DKVIEQLVDKE----MVSTPADLFRLRAGELTILERM------GPKSAQNIVNALNTAKA 505 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF++SLGIR VG A +LA ++L+ + LI VP VG I Sbjct: 506 TTLPRFLYSLGIREVGEATAMNLAHHFLTLDAIREATIE----------QLIEVPDVGTI 555 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-------KKLVFTGTLQK 660 +A + F+ RN VE L+ ++G H + ++ + ++ K +V TGTL + Sbjct: 556 VASHVHAFFTQERNQKVVEELI-----ALGIHWQAIAPKTDDEPQPLAGKVVVLTGTLSQ 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R A+ + LGA V+ +S+ TDI+ G+ GSKL KAQ+LG++I +E+ + +++ Sbjct: 611 LSRSDAKAALQALGAKVTGSVSKNTDILFAGEAAGSKLAKAQELGIEIRDEQDLIAMIR 669 >gi|117618613|ref|YP_855770.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166215386|sp|A0KHL9|DNLJ_AERHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|117560020|gb|ABK36968.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 668 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/695 (36%), Positives = 400/695 (57%), Gaps = 59/695 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R + P+L + P P ++GG+ + +V H IP Sbjct: 22 YYVLDNPTVPDAEYDRLMRELIVLEAEHPEL---KTPASPSVRVGGQPLTAFKQVRHEIP 78 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ +++ E+L+ F R+ + K + S F EPK+DG +++ Y G+ V AA R Sbjct: 79 MLSLDNVFSGEELQAFEQRMRD--RLKREVSFTFCCEPKLDGLAVSLLYVAGQLVQAATR 136 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211 GDG +GE+++ +R I IP LSL P +EVRGEV++ K F A+N + +A G K Sbjct: 137 GDGTTGEEITENVRTIKAIP--LSLRGEGWPARLEVRGEVFMPKAGFEAMNAKALAAGEK 194 Query: 212 PYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270 + NPRNAA+G LR+L+ +R L F+ +G+G E + L +++ G P++ Sbjct: 195 VFVNPRNAAAGSLRQLDSRITASRPLAFYAYGVGVGGEQLGGSHFGRLNQLKEWGLPLSP 254 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 V+ G ++++++ + R LPY+IDG+VYKVD LQ++LG AR+PRW +HKF Sbjct: 255 EVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEELGFVARAPRWATAHKF 314 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 ++ T L +++ Q+GRTG +TPVA+L+PV +GG ++NATLHN D I+ L Sbjct: 315 PAQEEMTELENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNADEIERL-------- 366 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 + +GD V+V+RAG+VIP++V ++ +R DA+ FP+ CP+C S V R G Sbjct: 367 ---GVMIGDTVIVRRAGDVIPQIVAVVEAQRPADARAILFPTECPVCGSAVER----LEG 419 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 + V RC+GGL C AQ+ E +KHF +R A +++GLG + ++ D ++ PAD+ Sbjct: 420 EAVT--RCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLV---DKGL-VKTPADL 473 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 F+L Q ++ G S NL +I+ R+ +L RF+F+LGIR VG A +L Sbjct: 474 FSLNAIQLAGLERM------GQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNL 527 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 A ++L+ ++ + A + + L+ V VGDI+A+ + F + P NI +EALL Sbjct: 528 ANHFLT-------LDALRAASVEQ---LLEVADVGDIVAKHVYYFLRQPHNIEVLEALL- 576 Query: 631 EVSPSIGRH----EKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 + G H EK +SE K V TGTL + R+ A+ + LGA V+ +S K Sbjct: 577 ----AAGIHWPAIEKKEASEQPFAGKTFVLTGTLTTLSRNDAKAALQALGAKVAGSVSAK 632 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 TD+++ G+ GSKL KAQ+LG+ + +EE+ LQ Sbjct: 633 TDVLVAGEAAGSKLVKAQELGITVWSEEELQQALQ 667 >gi|167549563|ref|ZP_02343322.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325268|gb|EDZ13107.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 671 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 251/713 (35%), Positives = 406/713 (56%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++ Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKATT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A D+ L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLETLQ-------AATIDE---LQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + + + + S K +V TG+L ++ R Sbjct: 558 THVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669 >gi|294649516|ref|ZP_06726937.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC 19194] gi|292824577|gb|EFF83359.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC 19194] Length = 675 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 268/719 (37%), Positives = 399/719 (55%), Gaps = 59/719 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ R+ L Q I+ H+ YY +P I DSEYD L + A+ +P+ +++ P Sbjct: 7 IEQMRQ----LIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTPT- 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 NK+GG+ VTH +P LSL ++N E+L F RI ++ + + + +E K Sbjct: 62 --NKVGGQALSKFESVTHVVPMLSLGNVFNQEELFAFARRID---ERLPNQKVQYEVELK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGE 190 +DG I++ YE G V RGDG +GED++ ++ I +P+VLS IP+++EVRGE Sbjct: 117 LDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSGQSQAIPQLLEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V + K F LN + A G K +ANPRNAA+G LR+L+P +R L F+ +G+ + Sbjct: 177 VLMPKQGFEKLNADQAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQPH 236 Query: 250 FA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ L + GF + + + Y +++ R L +IDG+V KVD+ Sbjct: 237 HGLATMHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQQERPDLNVEIDGMVVKVDD 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+QLG +R PRW ++KF + A T++ +ID Q+GRTG LTPVARL PV +GG + Sbjct: 297 LKQQQQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +N TLHN I L D+RVGD V V R G+VIPKV + R DA+ Sbjct: 357 SNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWAEFRPTDAEIV 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGLG Sbjct: 406 HLPTNCPVCDSPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGD 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + ++ ADI+ L T K+ I G+ SV NL D+I + Sbjct: 460 RWVESLLHLD----LLKDVADIYHL----HTHREKLLTIEKMGEKSVQNLIDAIEASKKT 511 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI+ LGIR VG AR LA N Q ++ + A + + SL + P VGDI Sbjct: 512 TLARFIYGLGIRGVGETTARMLA-------NTFQTLDALKAADVE---SLKKTPDVGDIT 561 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664 A+ I +F+Q P NI ++ L+ + G H ++ + + V TGTL+ + R Sbjct: 562 AEWIADFFQAPHNIEVLDRLM-----AAGIHWDAPTAPTRQPLNGESWVVTGTLESMGRD 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +A + + LGA VS +S KT ++ G+ GSKLEKAQ+L +++MNE++FL L QY T Sbjct: 617 EATQRLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAQKLEIRVMNEQEFLDFLAQYQT 675 >gi|68057854|gb|AAX88107.1| DNA ligase [Haemophilus influenzae 86-028NP] Length = 679 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 263/715 (36%), Positives = 415/715 (58%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 14 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 70 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 71 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 123 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 124 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 183 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 184 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 242 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 I Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 243 IDLPTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 303 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 363 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 410 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 411 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 464 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ + Sbjct: 465 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 514 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L+RFIF+LGIR VG A +LA ++ + A + + L +VP VG+ Sbjct: 515 STTLDRFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 564 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 565 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 619 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 620 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDGAGSKLAKAQELNITVLTEEEFL 674 >gi|168466836|ref|ZP_02700690.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630762|gb|EDX49354.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 671 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 251/716 (35%), Positives = 406/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAVKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|324112923|gb|EGC06899.1| DNA ligase [Escherichia fergusonii B253] Length = 671 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHAHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|54296979|ref|YP_123348.1| DNA ligase [Legionella pneumophila str. Paris] gi|81370862|sp|Q5X6E6|DNLJ_LEGPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|53750764|emb|CAH12171.1| DNA ligase [Legionella pneumophila str. Paris] Length = 673 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/706 (36%), Positives = 388/706 (54%), Gaps = 52/706 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + +L+++I +D YY +P++ D+EYD + +P P+ P + Sbjct: 7 KESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SPDSPTQR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEPKID 135 + G + + V H P LSL ++ I++L+ FI R +K D+ + F EPK+D Sbjct: 64 VSGTPSDAFMPVAHKQPMLSLSNVFTIDELKAFIKRAI---EKLDEPNQQLVFACEPKLD 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G +AA RGDG GE+++A I+ I ++P R+ N P++IEVRGEVYI Sbjct: 121 GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252 K DF A N +G K +ANPRNAA+G LR+LNP +R L + + +G + Sbjct: 181 KADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYSIGACEDYKLPN 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E L ++ GF V+ R+A G + YY M + R+ LP++IDG+VYK+D SLQ Sbjct: 241 SHLEQLNLLKEFGFRVSPETRRAIGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG +R+PR+ +HKF + TRL+ +D Q+GRTG +TPVARLEPV++GG ++NAT Sbjct: 301 QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I +DIR+GD V+++RAG+VIP+VV +I+ +R +A+ P Sbjct: 361 LHNFDEIT-----------RKDIRIGDTVIIRRAGDVIPEVVSVILEKRPINARKIELPK 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S VVR+ + A RC GGL C AQ + HF SR A IEGLG +D Sbjct: 410 NCPVCGSEVVREADE------AIARCIGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLID 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 D + AD++ L + + N+ G+ S NL ++ K + + R Sbjct: 464 QLV---DEGIVHHL-ADLYELDLQ------TLANLPRMGEKSAKNLLSALEKSKKTTFNR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR +G AR LA++Y ++ + ND +G + A + Sbjct: 514 FLYALGIREIGEAGARVLAEHYCDVESLKSATIEELMTLND----------IGPVAASHV 563 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEY 669 V F+ N+ ++ LL E+ + EK N + K +V TGTL + R +A+ Sbjct: 564 VHFFAQAHNLEVIDRLL-ELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSAMGREEAKAK 622 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + LGA VS +S KTD +I G GSKL KA +LGV I+ E++FL Sbjct: 623 LLALGAKVSGSVSSKTDYVIAGSEAGSKLIKATELGVAIIEEDEFL 668 >gi|312882689|ref|ZP_07742426.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122] gi|309369650|gb|EFP97165.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122] Length = 670 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/705 (35%), Positives = 397/705 (56%), Gaps = 47/705 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L+ L Q + H YY P I DSEYD L R + P+L + P ++G Sbjct: 8 KLNHLRQLLHSHGIKYYVEDNPQIPDSEYDRLMRELLELESQHPELVSLDSPT---QRVG 64 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G+ V H IP LSL+ ++ ++L F R+ + D+N F EPK+DG + Sbjct: 65 GKPLDGFESVQHEIPMLSLDNAFDDQELDAFQKRMQD--RLGDENIGLFCCEPKLDGLAV 122 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198 ++ YE G + AA RGDG +GE+++ +R I +IP L N P IEVRGEV++ K F Sbjct: 123 SLLYENGVLIQAATRGDGATGENITENVRTIKSIPLQLQGSNWPARIEVRGEVFMPKAGF 182 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYE 256 LN + + G K + NPRNAA+G LR+L+ +R L+F+ + +G E + YE Sbjct: 183 DKLNQQALKKGEKVFVNPRNAAAGSLRQLDSKITASRPLSFYAYSVGVVEEGELSSSHYE 242 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ G P+ Q + + +Y ++ + R L Y+IDG+V KVD ++Q++LG Sbjct: 243 RFIQLTRWGLPMCPETLQVDGLSAVKDFYQDILNRRDDLAYEIDGVVIKVDNVAVQERLG 302 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+L+PV +GG ++NATLHN Sbjct: 303 FVARAPRWAIAYKFPAQEEITVLNDVEFQVGRTGAITPVAKLKPVFVGGVTVSNATLHNA 362 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L + +GD V+++RAG+VIP++V +++ R +P +FP CP+ Sbjct: 363 DEIERL-----------GVMIGDEVVIRRAGDVIPQIVSVVLERRSDTTKPITFPICCPV 411 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S + R G+ VA RCTGG C AQ+ E LKHFVSR A +++GLG++ ++ Sbjct: 412 CHSEIER----LDGEAVA--RCTGGFVCQAQRKEALKHFVSRKALDVDGLGEKVIEQLVD 465 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E + PAD+F L Q + ++ G S N+ D++ ++ +L RF++S Sbjct: 466 RE----LVSTPADLFKLSPHQLSVLERM------GPKSAKNVVDALEHSKSTTLSRFLYS 515 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A +LAK++ + + NI A +D +LI V +GDI+A+ I F+ Sbjct: 516 LGIREVGEATATNLAKHF-------KTLANITAAPHD---ALIEVQDIGDIVAKHITAFF 565 Query: 617 QNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +N ++ LL + I + N ++ K +V TG+L ++ R A+E + LG Sbjct: 566 SQQQNQTVIDDLLSQGIEWSDIEDNHANTPQVLQGKVVVLTGSLSQLNRSDAKEALESLG 625 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A V+ +S+KTDI+ G+N GSKL KAQ LG++I E+ + L++ Sbjct: 626 AKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIRTEQDLVALIR 670 >gi|207857840|ref|YP_002244491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|254781409|sp|B5R3V4|DNLJ_SALEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206709643|emb|CAR33993.1| DNA ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 671 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 250/716 (34%), Positives = 403/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + + L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATID----------ELQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + V S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEVDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|168238909|ref|ZP_02663967.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734182|ref|YP_002115493.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|254781415|sp|B4TQF8|DNLJ_SALSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194709684|gb|ACF88905.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288317|gb|EDY27698.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 671 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 251/716 (35%), Positives = 406/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEMIRLL 669 >gi|161761269|ref|YP_248767.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae 86-028NP] gi|166215835|sp|Q4QLJ0|DNLJ_HAEI8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|309973429|gb|ADO96630.1| NAD-dependent DNA ligase [Haemophilus influenzae R2846] Length = 670 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 263/715 (36%), Positives = 415/715 (58%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 5 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 62 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 I Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 234 IDLPTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ + Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L+RFIF+LGIR VG A +LA ++ + A + + L +VP VG+ Sbjct: 506 STTLDRFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDGAGSKLAKAQELNITVLTEEEFL 665 >gi|93005182|ref|YP_579619.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5] gi|122989955|sp|Q1QDW8|DNLJ_PSYCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|92392860|gb|ABE74135.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5] Length = 691 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 268/698 (38%), Positives = 389/698 (55%), Gaps = 57/698 (8%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF-KV 89 H+ YY PI+ DSEYD L+R + +PDL + P+ P+N++G +M LS F +V Sbjct: 39 HNYAYYVLDNPILEDSEYDQLRRSLLELEEEYPDLIQ---PDSPINQVG-DMPLSAFTQV 94 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 TH IP LSL ++ +DLR F+ R+ S + +E K+DG ++++Y GKFV Sbjct: 95 THDIPMLSLGNVFEYDDLRDFMRRVNDRLSVAQ-QSPEYEMELKLDGLAVSLKYAYGKFV 153 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-----EIIEVRGEVYISKNDFLALNDE 204 A RGDG +GED++ + I +P L IP E++EVRGEV + K F LN Sbjct: 154 QAVTRGDGQTGEDITQNAKTIRNLP----LWIPAASDIELLEVRGEVLMPKAGFERLNRL 209 Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 G K +ANPRNAA+G LR+L+P +R L F+ + + + K Q L ++ Sbjct: 210 AEEKGDKTFANPRNAAAGSLRQLDPAIAASRPLAFYCYSVNQGLPEHIKTQSAALAWLKT 269 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 +GF V+ V +YY +K R LP++IDG+V KV+ +LQ+QLG +R PR Sbjct: 270 IGFTVS-AVEVVQNPREAQAYYESVKETRGDLPFEIDGMVIKVNSLALQQQLGFLSREPR 328 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W ++KF + TRL I+ Q+GRTG +TPV +LEPV +GG ++N TLHN I+ L Sbjct: 329 WATAYKFPAETVMTRLHAIEWQVGRTGAITPVGKLEPVKVGGVTVSNVTLHNFGEIQRL- 387 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 D+R GD V V RAG+VIPKV + ++R +++P PS CP+C S VV Sbjct: 388 ----------DVRAGDMVSVHRAGDVIPKVTRVWTDQRPENSEPVKLPSTCPVCDSPVVL 437 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 PK L RCTGGL C AQQ+E L HFVSR A +I+GLG L FF+ Sbjct: 438 ---PKDEALA---RCTGGLFCPAQQVEALIHFVSRRAMDIDGLGASWLISFFEHG----L 487 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 ++ ADI+ L Q+ T + G+ SV N+ +I + +L RFI++LGIR VG Sbjct: 488 VKTVADIYQLHNHQEELIT----LEKLGEKSVQNILSAIEASKQTTLARFIYALGIRGVG 543 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 A QN AQ+ ++ A + L+ P VG I A+ +F++ P NI Sbjct: 544 ETTA----------QNLAQQFGDLDALMSASIEKLLLTPDVGAITAELTYKFFRAPHNIE 593 Query: 624 AVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 + A L+E + E+ V+SE ++ + V TG L + R +A+ + LGA VS Sbjct: 594 VINA-LREAGVHWDKVEQ-VASEGLPLDGQTWVITGALDSMARDEAKAKLQALGAKVSGS 651 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S KT ++ GD GSK+ KA++LGVK++ EE+FL L+ Sbjct: 652 ISAKTTALLAGDKAGSKMAKAEKLGVKVVGEEEFLVLV 689 >gi|212710592|ref|ZP_03318720.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM 30120] gi|212686673|gb|EEB46201.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM 30120] Length = 678 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 245/707 (34%), Positives = 404/707 (57%), Gaps = 49/707 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ +L+Q++ +H+ Y+ P I D EYD L + A+ P+L ++ P ++ Sbjct: 12 QKIDALKQQLRHHEYLYHVMDAPEIPDVEYDKLMQELKALEAEHPELITTDSPT---QRV 68 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + V H IP LSL+ +++ E F R+ + + F E K+DG Sbjct: 69 GAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVKDRLH--NHTELTFCCELKLDGLA 126 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G+ V AA RGDG GE+++A +R I IP R+ NIP +E+RGEV++ + Sbjct: 127 VSLLYENGELVQAATRGDGTVGENITANVRTIKAIPLRLRGDNIPARVEIRGEVFMPQKG 186 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFAKGQY 255 F A+N+E K +ANPRNAA+G LR+L+P R L F+ +G+G + Y Sbjct: 187 FEAMNEEARKTDGKIFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGKTLPDTHY 246 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L + + G PV+ V+ ++ +Y+ ++ IR TL +DIDG+V KV++ ++Q++L Sbjct: 247 ERLMQFKAWGLPVSEHVQLRVGCQQVLDFYHHVEKIRPTLGFDIDGVVIKVNDIAIQEEL 306 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW + KF ++ T L D++ Q+GRTG +TPVARLEPV + G +++NATLHN Sbjct: 307 GFVSRAPRWATAFKFPAQEQITLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLHN 366 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I L +R+GD V+++RAG+VIP++V +++++R D++ FP+ CP Sbjct: 367 ADEIDRL-----------GVRIGDTVVIRRAGDVIPQIVSVVMDKRPADSREIIFPTHCP 415 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S D+ G+ VA RCTGGL C AQ E LKHFVSR A +++G+G + ++ Sbjct: 416 VCNS----DIERVEGEAVA--RCTGGLTCGAQLKESLKHFVSRRAMDVDGMGDKIIEQLV 469 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 +E A + ++ Q S K+ + G S L D++ K + +L RFI+ Sbjct: 470 DAEYVANAAQL----------YQLSAGKLTGLERMGPKSAQKLIDALEKSKQTTLARFIY 519 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A +LA +Y S ++ ++A + D SL V +G+++A+ +V F Sbjct: 520 ALGIREVGEATAANLAAHYAS-------LDAVMAADED---SLKTVQDIGEVVAKHVVHF 569 Query: 616 YQNPRNICAVEALLKEVS---PSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 ++ N + LL + P + + + S K +V TG++ + R A++ + Sbjct: 570 FREEHNRQVIHDLLTIANIHWPEVKVINSAEIDSPFAGKTVVLTGSMSTLSRDDAKDKLV 629 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V+ +S+KTD++I G+ GSKL KA +LG+K+++EE+ + LL Sbjct: 630 ALGAKVAGSVSKKTDLVIAGEAAGSKLAKATELGIKVIDEEELIRLL 676 >gi|254374741|ref|ZP_04990222.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548] gi|151572460|gb|EDN38114.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548] Length = 678 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 269/728 (36%), Positives = 408/728 (56%), Gaps = 65/728 (8%) Query: 6 LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 + P E SI+ A+ EL + L +S Y+ KPII DS+YD L R + Sbjct: 1 MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 + P + N L+++GGE+ + H SL ++++E+LR F +I Sbjct: 61 VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYGKI---- 113 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + I EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P L+ Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169 Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236 N PE +EVRGE+ + K FL+LN+ M K +ANPRNAA+G +R L+ + R L Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229 Query: 237 NFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + +G+G S+ F + Q+E++Q ++ GF +++ + A F + Y+++M R+ Sbjct: 230 KLYSYGIGYFSKDFVHPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDGLV+KV+ LQ +G AR P+W +++KF ++ + +L+++ Q+GRTG +TP Sbjct: 290 LAYDIDGLVFKVNNIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITP 349 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +++NATLHN + IK +DIRV DRV+V+RAG+VIP+VV Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVSDRVIVRRAGDVIPEVV 398 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + R PDAQ P CP+C S + ++N + A +RCTGG C AQ ERLKH Sbjct: 399 KSLPQYRKPDAQVVEMPISCPVCDS-AIENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSR A +I+ LG + ++ A I+ PADI+ L Q T ++ G S Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFDQLTGLERM------GAKS 502 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 N+ DSI K + SL RFIF++GI+ +G + LA ++ S ++F + Sbjct: 503 SQNVLDSIKKSKTPSLARFIFAIGIKDIGEVSSDVLANHFGSLESF----------RDAK 552 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650 + LI + +G+I+A IV F+ + NI VE LL K +P H N S K Sbjct: 553 FEELIEINDIGEIMANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNES--FTGK 610 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+ + R + + + +GA V++ +S+KTD++I GDN GSKL KAQ+LGV+++ Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTKAQELGVEVIL 670 Query: 711 EEQFLFLL 718 E+ LL Sbjct: 671 EDNLKDLL 678 >gi|169797009|ref|YP_001714802.1| DNA ligase [Acinetobacter baumannii AYE] gi|169149936|emb|CAM87830.1| DNA ligase [Acinetobacter baumannii AYE] Length = 691 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 263/723 (36%), Positives = 398/723 (55%), Gaps = 55/723 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+L +++ P Sbjct: 14 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 73 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 K+GG+ VTH +P LSL ++N EDL F R+ ++ + + + +E Sbjct: 74 T---TKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVE 127 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL IP ++EVR Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P R L F+ +G+ + Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247 Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 417 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + + ++ ADI+ L ++T + I G+ SV NL D+I + Sbjct: 471 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 522 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA N Q + + A N + +L + P VGD Sbjct: 523 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGD 572 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662 I A+ I +F+ P NI ++ L+ + G H ++ + + V TGTL+++ Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 627 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R +A + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y Sbjct: 628 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 687 Query: 723 TTL 725 TL Sbjct: 688 QTL 690 >gi|239501241|ref|ZP_04660551.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB900] Length = 678 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 263/723 (36%), Positives = 398/723 (55%), Gaps = 55/723 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+L +++ P Sbjct: 1 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 K+GG+ VTH +P LSL ++N EDL F R+ ++ + + + +E Sbjct: 61 T---TKVGGQALSKFESVTHVVPMLSLGNVFNKEDLFAFARRVE---ERLPNQKVQYEVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL IP ++EVR Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P R L F+ +G+ + Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234 Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 404 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + + ++ ADI+ L ++T + I G+ SV NL D+I + Sbjct: 458 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA N Q + + A N + +L + P VGD Sbjct: 510 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGD 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662 I A+ I +F+ P NI ++ L+ + G H ++ + + V TGTL+++ Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 614 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R +A + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y Sbjct: 615 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 674 Query: 723 TTL 725 TL Sbjct: 675 QTL 677 >gi|168231967|ref|ZP_02657025.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471791|ref|ZP_03077775.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458155|gb|EDX46994.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333574|gb|EDZ20338.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 671 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 251/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669 >gi|213156587|ref|YP_002318248.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057] gi|215484469|ref|YP_002326704.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294] gi|301347734|ref|ZP_07228475.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB056] gi|301512482|ref|ZP_07237719.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB058] gi|301594386|ref|ZP_07239394.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB059] gi|221222446|sp|A3M2U3|DNLJ_ACIBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254778154|sp|B7GZ71|DNLJ_ACIB3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254778155|sp|B7I790|DNLJ_ACIB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781253|sp|B0V8E4|DNLJ_ACIBY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193076578|gb|ABO11237.2| DNA ligase [Acinetobacter baumannii ATCC 17978] gi|213055747|gb|ACJ40649.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057] gi|213986610|gb|ACJ56909.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294] Length = 678 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 263/723 (36%), Positives = 398/723 (55%), Gaps = 55/723 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+L +++ P Sbjct: 1 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 K+GG+ VTH +P LSL ++N EDL F R+ ++ + + + +E Sbjct: 61 T---TKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL IP ++EVR Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P R L F+ +G+ + Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234 Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 404 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + + ++ ADI+ L ++T + I G+ SV NL D+I + Sbjct: 458 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA N Q + + A N + +L + P VGD Sbjct: 510 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGD 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662 I A+ I +F+ P NI ++ L+ + G H ++ + + V TGTL+++ Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 614 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R +A + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y Sbjct: 615 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 674 Query: 723 TTL 725 TL Sbjct: 675 QTL 677 >gi|260555699|ref|ZP_05827919.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606] gi|260410610|gb|EEX03908.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606] Length = 691 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 264/723 (36%), Positives = 398/723 (55%), Gaps = 55/723 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+L +++ P Sbjct: 14 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 73 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 K+GG+ VTH +P LSL ++N EDL F R+ ++ + + + +E Sbjct: 74 T---MKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVE 127 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188 K+DG I+I YE G V RGDG +GED++ ++ I +P+VL IP ++EVR Sbjct: 128 LKLDGLAISIWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P R L F+ +G+ + Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247 Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 417 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + + ++ ADI+ L ++T + I G+ SV NL D+I + Sbjct: 471 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 522 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA N Q + + A N + +L + P VGD Sbjct: 523 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGD 572 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662 I A+ I +F+ P NI ++ L+ + G H ++ + + V TGTL+++ Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 627 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R +A + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y Sbjct: 628 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 687 Query: 723 TTL 725 TL Sbjct: 688 QTL 690 >gi|170767420|ref|ZP_02901873.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627] gi|170123754|gb|EDS92685.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627] Length = 671 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 250/717 (34%), Positives = 407/717 (56%), Gaps = 60/717 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQKLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----VLE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V + ++++Y +++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLMQFKEWGLPVSDRVTLCESAEEVLAFYRKVEEDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G Sbjct: 292 NSLAQQEELGFVARAPRWAVAFKFPAQEQMTYVRDVEFQVGRTGAITPVARLEPVHVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 EVVFPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVG 605 + RF+++LGIR VG A LA Y+ + + A I L +VP VG Sbjct: 505 ETTFARFLYALGIREVGEATATGLAAYFGTLETLEAASIEE-----------LQKVPDVG 553 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 ++A + F+ N + LL E +P + E+ + S K +V TG+L ++ Sbjct: 554 IVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQM 612 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 613 SRDDAKARLIELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|315180839|gb|ADT87753.1| DNA ligase [Vibrio furnissii NCTC 11218] Length = 669 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 260/719 (36%), Positives = 406/719 (56%), Gaps = 63/719 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + L+ L+ + YH YY P I D+EYD L R + P+L P+ Sbjct: 1 MQNVEQRLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEARHPELVT---PDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEP 132 P ++GG +VTH IP LSL+ ++ ++L F R+ R K + F EP Sbjct: 58 PSQRVGGAPLAGFEQVTHEIPMLSLDNAFDDDELNSFHRRMGDRVLAAK---TAKFCCEP 114 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG +++ Y G V AA RGDG +GE+++ +R I +IP R+ P IEVRGEV Sbjct: 115 KLDGLAVSLLYVDGVLVQAATRGDGTTGENITENVRTIKSIPLRLQGTGWPTRIEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SE 248 ++ K F +N E + G K + NPRNAA+G LR+L+ + IT R L F+ + +G Sbjct: 175 FMPKAGFEKMNAEALKKGEKVFVNPRNAAAGSLRQLD-SRITAKRPLAFYAYSVGVIQGG 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 YE +++ G P++ ++ + + YY ++ + RS LPY+IDG+V KVD+ Sbjct: 234 TLVDSHYERFLQLKGWGLPMSPETKRVASLDEVKVYYQDIMTRRSELPYEIDGVVIKVDD 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 294 IALQEQLGFVARAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQP 427 +NATLHN D I+ L +++GD V+++RAG+VIP++V +VNE P+ A+ Sbjct: 354 SNATLHNADEIERL-----------GVKIGDTVVIRRAGDVIPQIVS-VVNELRPETARE 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 FP+ CP+CQS V R G+ VA RC+GGL C AQ+ E LKHFVSR A +++GLG Sbjct: 402 ILFPAQCPVCQSDVER----IEGEAVA--RCSGGLVCQAQRKEALKHFVSRKALDVDGLG 455 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E + PAD+F L+ + T ++ G S N+ +++N + Sbjct: 456 DKVIEQLVDKE----MVSTPADLFRLRAGELTVLERM------GPKSAQNIVNALNTAKA 505 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF++SLGIR VG A +LA ++L+ + LI VP VG I Sbjct: 506 TTLPRFLYSLGIREVGEATAMNLAHHFLTLDAIREATIE----------QLIEVPDVGTI 555 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-------KKLVFTGTLQK 660 +A + F+ RN VE L+ ++G H + ++ + ++ K +V TGTL + Sbjct: 556 VASHVHAFFAQERNQKVVEELI-----ALGIHWQAIAPKTDDEPQPLAGKVVVLTGTLSQ 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R A+ + LGA V+ +S+ TDI+ G+ GSKL KAQ+LG++I +EE + +++ Sbjct: 611 LSRSDAKAALQALGAKVTGSVSKNTDILFAGEAAGSKLAKAQELGIEICDEEDLIAMIR 669 >gi|260550982|ref|ZP_05825187.1| DNA ligase [Acinetobacter sp. RUH2624] gi|260405930|gb|EEW99417.1| DNA ligase [Acinetobacter sp. RUH2624] Length = 691 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 264/723 (36%), Positives = 398/723 (55%), Gaps = 55/723 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+L +++ P Sbjct: 14 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQTDSP 73 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 K+GG+ VTH +P LSL ++N EDL F R+ ++ + + + +E Sbjct: 74 T---TKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVE 127 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL IP ++EVR Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P R L F+ +G+ + Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCE 247 Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R +L +IDG+V KV Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPSLQVEIDGMVVKV 307 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+RVGD V V R G+VIPKV + R +A+ Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 417 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + + ++ ADI+ L ++T + I G+ SV NL D+I + Sbjct: 471 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 522 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA N Q + + A N + L + P VGD Sbjct: 523 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---VLKKTPDVGD 572 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662 I A+ I +F+ P NI ++ L+ + G H ++ + + V TGTL+++ Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 627 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R +A + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y Sbjct: 628 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKATKLGIPVMNETDFLSLMASYG 687 Query: 723 TTL 725 TL Sbjct: 688 QTL 690 >gi|205353534|ref|YP_002227335.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|254781410|sp|B5RCP9|DNLJ_SALG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|205273315|emb|CAR38285.1| DNA ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628629|gb|EGE34972.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 671 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 249/716 (34%), Positives = 403/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIEQL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + + L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATID----------ELQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|332852097|ref|ZP_08433924.1| DNA ligase [Acinetobacter baumannii 6013150] gi|332867495|ref|ZP_08437648.1| DNA ligase [Acinetobacter baumannii 6013113] gi|332872654|ref|ZP_08440622.1| DNA ligase [Acinetobacter baumannii 6014059] gi|332729469|gb|EGJ60808.1| DNA ligase [Acinetobacter baumannii 6013150] gi|332733912|gb|EGJ65057.1| DNA ligase [Acinetobacter baumannii 6013113] gi|332739183|gb|EGJ70042.1| DNA ligase [Acinetobacter baumannii 6014059] Length = 683 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 263/723 (36%), Positives = 398/723 (55%), Gaps = 55/723 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+L +++ P Sbjct: 6 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 65 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 K+GG+ VTH +P LSL ++N EDL F R+ ++ + + + +E Sbjct: 66 T---TKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVE 119 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL IP ++EVR Sbjct: 120 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 179 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P R L F+ +G+ + Sbjct: 180 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 239 Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 240 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 300 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 360 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 408 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 409 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 462 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + + ++ ADI+ L ++T + I G+ SV NL D+I + Sbjct: 463 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 514 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA N Q + + A N + +L + P VGD Sbjct: 515 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGD 564 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662 I A+ I +F+ P NI ++ L+ + G H ++ + + V TGTL+++ Sbjct: 565 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 619 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R +A + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y Sbjct: 620 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 679 Query: 723 TTL 725 TL Sbjct: 680 QTL 682 >gi|204929538|ref|ZP_03220612.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321257|gb|EDZ06457.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 671 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 251/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEMIRLL 669 >gi|197247622|ref|YP_002147380.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|254781407|sp|B5F0F5|DNLJ_SALA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|197211325|gb|ACH48722.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 671 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 251/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|224369899|ref|YP_002604063.1| LigA1 [Desulfobacterium autotrophicum HRM2] gi|254781310|sp|C0QJ86|DNLJ_DESAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|223692616|gb|ACN15899.1| LigA1 [Desulfobacterium autotrophicum HRM2] Length = 685 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 257/719 (35%), Positives = 401/719 (55%), Gaps = 62/719 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S ++ +KE L +++ H+ Y+ P+I D EYD + +R AI FP+L+ P+ Sbjct: 7 SFDRIKKEARLLREQLHVHNINYHVKDDPVISDGEYDRMMQRLIAIETQFPELS---TPD 63 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +IG + + H+IP SL+ ++ +D+ F R + D I +T+EP Sbjct: 64 SPTRRIGAKALTAFETAEHAIPMQSLDNAFSDQDVIDFHNRTAKILNTSD---IRYTVEP 120 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVR 188 K+DG + +RYE+G A RGDG GE ++ R IP++P L+ IP+++EVR Sbjct: 121 KLDGVAVELRYEQGSLTLALTRGDGTMGEVITDNARTIPSVPLKLAPAGNGTIPDVLEVR 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEV I+ DF LN + +A G +ANPRNAA+G LR+L+ R L FV+G+G+ Sbjct: 181 GEVIINSKDFEGLNKKRLATGEPLFANPRNAAAGSLRQLDSRVTAKRPLEIFVYGVGRAQ 240 Query: 248 EIFAK----GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 E+ A +L+ ++ LGF +N +R + ++ + +++R L Y+IDG+V Sbjct: 241 ELMANFDIGSHSALLESLKRLGFRINPLIRSGLSLTEVLDRFKAFETMRQDLDYEIDGMV 300 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVD+ Q++LG +ARSPRW I++KF + +T + DI +Q+GRTG LTPVA LEPVNI Sbjct: 301 IKVDDIVFQERLGTKARSPRWAIAYKFPAMEETTVINDIIVQVGRTGTLTPVAILEPVNI 360 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++ A+LHN+D I+ +DIR+ D VLVKRAG+VIPKVV + R Sbjct: 361 GGVMVARASLHNQDEIQ-----------NKDIRINDTVLVKRAGDVIPKVVKPVTALRTG 409 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + F P+ CP+C S V R N AA +C +C AQ +RLKHFVS+ F++ Sbjct: 410 SERVFVMPTHCPVCHSPVRRLDNE------AAVKCINA-SCKAQLKQRLKHFVSKGGFDM 462 Query: 484 EGLGKQQLDFFF-KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 EGLG + +D ++ +F AD+FTL R + ++ G+ S TN+ +I Sbjct: 463 EGLGTKLIDQLVDRTLVGSF-----ADLFTLDRETLAAMDRM------GEKSATNIVQAI 511 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + I L+RF+F+LG+ H G A+ L+ + + + + +L + Sbjct: 512 ERSKRIPLKRFLFALGMAHTGESAAQLLSSTFFTLEALLKASAE----------ALGAIE 561 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTG 656 VG A ++V F+ NP N + A + E I H S+ ++N K++V TG Sbjct: 562 GVGPKTADSVVAFFANPDNQETI-ARMMENGVVIENHTVVESAALDNATFFSEKRVVLTG 620 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 TL + R +A++ + + GA V + +S+ TDI++ G+ GSKL KA+ LGV IM+E+ FL Sbjct: 621 TLGTLTRSEAKQRLEEQGARVVSSVSKNTDILVAGEASGSKLVKARSLGVTIMDEQTFL 679 >gi|163751929|ref|ZP_02159142.1| DNA ligase, NAD-dependent [Shewanella benthica KT99] gi|161328212|gb|EDP99377.1| DNA ligase, NAD-dependent [Shewanella benthica KT99] Length = 690 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 260/719 (36%), Positives = 401/719 (55%), Gaps = 60/719 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73 +E+ L EI+ HD Y+ PII DSEYD LK + + + FP L D N Sbjct: 10 QEIEHLISEINEHDHRYHVLDDPIITDSEYDRLKIKLKKLENRFPALNLILDLNAVSEGV 69 Query: 74 --------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 P ++GG+ ++TH P LSL+ ++N E+ F R+ + + Sbjct: 70 HTSIRFDSPSRRVGGKALSKFDQITHLKPMLSLDNVFNDEEFEAFHARL----TNRLGTT 125 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184 + F EPK+DG ++I Y G AA RGDG GED++ +R I +IP ++ N P + Sbjct: 126 LRFCCEPKLDGLAVSILYRDGVLERAATRGDGEIGEDITENVRTIRSIPLKLRGDNFPPL 185 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +EVRGEV + K F +LN+ A G K + NPRNAA+G LR+L+ +R L F+ + L Sbjct: 186 LEVRGEVIMPKQAFDSLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRSLGFYAYAL 245 Query: 244 G---KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G + A Y L +++ GFPV+ V+Q ++ +++YY ++ + RS L Y+ID Sbjct: 246 GVVEPETWGLADHHYGQLLQLKSWGFPVSAEVKQCDSVSEVIAYYTDIMTRRSALAYEID 305 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KVD + Q +LG A++PRW + KF ++ T L +D Q+GRTG +TPVARL+P Sbjct: 306 GVVIKVDNIAQQLKLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKP 365 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 + +GG ++NATLHN D I L +++ D V+V+RAG+VIP++V I+ + Sbjct: 366 IFVGGVTVSNATLHNADEIARL-----------GVKIKDTVIVRRAGDVIPQIVAIVAEK 414 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R DA FP CP+C S V R G++VA RCTGGL C AQ+ E +KHF SR A Sbjct: 415 RPDDACEIEFPQTCPVCDSLVER----IEGEVVA--RCTGGLFCEAQRKEAIKHFASRKA 468 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+G+G + ++ E + PAD+F L S + I + G S TNL Sbjct: 469 LDIDGMGDKVVEQLIDKE----LVESPADLFKL------SASAITMLDRMGLKSATNLVA 518 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I + + RF+++LGIR VG A +LA Y+ S ++ + A N +++ I+ Sbjct: 519 AIEVAKKTTFPRFLYALGIREVGEATAANLANYFKS-------LDKLKAANAEEF---IK 568 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 V VG I+AQ + F+ N+ V++L++ V+ + S ++ + V TGTL Sbjct: 569 VDDVGTIVAQHLTHFFAQSHNVEVVDSLIEAGVNWPVIEEVAEESLSLKGQTWVLTGTLT 628 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ R+ A+ + LGA V+A +S+ TD ++ G+ GSKL KAQ LG+KI++E+ L +L Sbjct: 629 QLNRNDAKAQLQALGAKVAASVSKNTDCLVAGEAAGSKLTKAQDLGIKILDEDGLLAVL 687 >gi|74312947|ref|YP_311366.1| NAD-dependent DNA ligase LigA [Shigella sonnei Ss046] gi|123732314|sp|Q3YZD1|DNLJ_SHISS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|73856424|gb|AAZ89131.1| DNA ligase [Shigella sonnei Ss046] gi|323169148|gb|EFZ54825.1| DNA ligase, NAD-dependent [Shigella sonnei 53G] Length = 671 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 252/714 (35%), Positives = 409/714 (57%), Gaps = 54/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDII 608 RF+++LGIR VG A LA Y+ + + A I L +VP VG ++ Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLEVLEAASIEE-----------LQKVPDVGIVV 556 Query: 609 AQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 A + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 557 ASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRD 615 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 616 DAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|200388789|ref|ZP_03215401.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605887|gb|EDZ04432.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 671 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 251/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAVKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|194444893|ref|YP_002041687.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|254781412|sp|B4SZU5|DNLJ_SALNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194403556|gb|ACF63778.1| DNA ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 671 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 251/713 (35%), Positives = 406/713 (56%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++ Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKATT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A D+ L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + + + + S K +V TG+L ++ R Sbjct: 558 THVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 617 AKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669 >gi|168243193|ref|ZP_02668125.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449589|ref|YP_002046491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|254781411|sp|B4TCF6|DNLJ_SALHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194407893|gb|ACF68112.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337689|gb|EDZ24453.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 671 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 249/716 (34%), Positives = 403/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + + L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATID----------ELQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|241764431|ref|ZP_04762455.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN] gi|241366173|gb|EER60750.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN] Length = 697 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 259/702 (36%), Positives = 382/702 (54%), Gaps = 58/702 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY +P + D+EYD++ R A+ A PDL P+ P ++ G + L V H +P Sbjct: 30 YYVMDEPTVPDAEYDSVFRELQALETAHPDLI---TPDSPTQRVIGAVMDGLPPVRHVVP 86 Query: 95 TLSLEKIWNIE--DLRKFITRI-YRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 LS+ + E + F R+ + D + + EPK DG +++RYE G+ V A Sbjct: 87 MLSIHTETDTEATGAQAFDARVRHELGLAPSDPPVEYVAEPKFDGLAMSLRYENGRLVQA 146 Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSL--------NIPEIIEVRGEVYISKNDFLALND 203 A RGDG GEDV+ IR I IP VL N+P ++EVRGEVY+ + DF ALN+ Sbjct: 147 ATRGDGEVGEDVTHNIRTIRQIPLVLPFDTPVSGGNNVPPLLEVRGEVYMRRADFDALNE 206 Query: 204 EMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG-----QYEM 257 G K + NPRNAA+G +R+L+ R L+FF +GLG + + G YE+ Sbjct: 207 RQREHGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLGAITPVGEGGPAFRTHYEV 266 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ ++ GFPV V+ +V+Y+ + + R LPYDIDG+VYKV+ LQ+ LG Sbjct: 267 LQTLKSWGFPVAAQVQITQGATELVAYHQRVGASRDALPYDIDGVVYKVNSLLLQRDLGF 326 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + R PRW ++HK+ ++ +T++ ID+Q+GRTG +TPVARL PV +GG +TNATLHN Sbjct: 327 KTREPRWAVAHKYPAQEMATKIEGIDVQVGRTGKITPVARLAPVFVGGVTVTNATLHNLF 386 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ + +RVGD V+V+RAG+VIP+VV ++ R F P+ CP+C Sbjct: 387 EIR-----------KKGVRVGDTVIVRRAGDVIPEVVGVMPGNRVGYVPNFRMPNACPVC 435 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S VVR+ K A HRCTGGL C+AQ+ E + HF +R A +IEGLG + +D Sbjct: 436 GSDVVRE------KGEANHRCTGGLFCAAQRKEAILHFAARRAMDIEGLGDKLVDQLVD- 488 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A IR D++ R TS +E + + S N+ ++ K + +L RF+F+L Sbjct: 489 ---ANVIRTLPDLY---RLGLTSLIALERM---AEKSAQNVLAALEKSKQTTLPRFLFAL 539 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG A+ LA+++ + ND VG ++A+AI F+ Sbjct: 540 GIRHVGEATAKDLARHFGVLDAIMDATEEQLLAVND----------VGPVVAKAIHTFFG 589 Query: 618 NPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 P N VE L V+ G + + +V TGTL + R A++ + GA Sbjct: 590 QPHNREVVEQLRACGVTWPEGAPAERAPQVLAGMTVVLTGTLPTLSRDAAKDLLEAAGAK 649 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V+ +S+KT ++ G+ GSKL +AQ+LGV +++E L LL Sbjct: 650 VAGSVSKKTHYVVAGEEAGSKLARAQELGVPVLDEAGMLALL 691 >gi|184157078|ref|YP_001845417.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU] gi|254778156|sp|B2HUJ5|DNLJ_ACIBC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183208672|gb|ACC56070.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU] Length = 673 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 266/721 (36%), Positives = 397/721 (55%), Gaps = 59/721 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ R+ L Q I+ H+ YY +P I DSEYD L + A+ +P+L +++ P Sbjct: 2 IEQMRQ----LIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPT- 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 K+GG+ VTH +P LSL ++N EDL F R+ ++ + + + +E K Sbjct: 57 --TKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVELK 111 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGE 190 +DG I++ YE G V RGDG +GED++ ++ I +P+VL IP ++EVRGE Sbjct: 112 LDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V + K+ F LN + A G K +ANPRNAA+G LR+L+P R L F+ +G+ + Sbjct: 172 VLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPN 231 Query: 250 FA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KVD+ Sbjct: 232 HGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDD 291 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG + Sbjct: 292 LKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTV 351 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 352 SNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVV 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGLG Sbjct: 401 HLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGD 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + + ++ ADI+ L ++T + I G+ SV NL D+I + Sbjct: 455 RWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASKKT 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGIR VG AR LA N Q + + A N + +L + P VGDI Sbjct: 507 TLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGDIT 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664 A+ I +F+ P NI ++ L+ + G H ++ + + V TGTL+++ R Sbjct: 557 AEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRD 611 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y T Sbjct: 612 QATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQT 671 Query: 725 L 725 L Sbjct: 672 L 672 >gi|56412686|ref|YP_149761.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361620|ref|YP_002141256.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81362021|sp|Q5PNE2|DNLJ_SALPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781414|sp|B5BB72|DNLJ_SALPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56126943|gb|AAV76449.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093096|emb|CAR58535.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 671 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 251/716 (35%), Positives = 406/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669 >gi|62180995|ref|YP_217412.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75481868|sp|Q57LT1|DNLJ_SALCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|62128628|gb|AAX66331.1| DNA ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715476|gb|EFZ07047.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 671 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 251/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAEGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|168261543|ref|ZP_02683516.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349337|gb|EDZ35968.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 671 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 251/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|145636448|ref|ZP_01792116.1| DNA ligase [Haemophilus influenzae PittHH] gi|145270273|gb|EDK10208.1| DNA ligase [Haemophilus influenzae PittHH] Length = 670 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 263/715 (36%), Positives = 414/715 (57%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 5 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 62 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++S F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 175 VFMSHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T+++ + G S N +S+ + Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLDRM---GTKSAENALNSLENAK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFIFSLGIR VG A +LA ++ + A + + L +VP VG+ Sbjct: 506 STTLARFIFSLGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665 >gi|260581847|ref|ZP_05849643.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127] gi|260095040|gb|EEW78932.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127] Length = 679 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 264/715 (36%), Positives = 413/715 (57%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 14 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 70 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 71 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 123 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 124 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 183 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 184 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 242 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 243 VDLPTTHYACLQWLKSIGIPVNPEIRLCNGADEVLDFYRDIQNKRSSLGYDIDGTVLKIN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 303 DIALQNELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVT 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 363 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 410 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 411 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 464 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ K + Sbjct: 465 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GVKSAENALNSLEKAK 514 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFIF+LGIR VG A +LA ++ + A D L +VP VG+ Sbjct: 515 STTLARFIFALGIREVGEATALNLANHF----------KTLDALKAADLDQLQQVPDVGE 564 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 565 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 619 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 620 MGRNEAKALLQQLGAKVSGSVSNKTDFVIAGDAAGSKLAKAQELNIAVLTEEEFL 674 >gi|237732406|ref|ZP_04562887.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2] gi|226907945|gb|EEH93863.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2] Length = 671 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 251/712 (35%), Positives = 406/712 (57%), Gaps = 50/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMCELRELEAQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTDKLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGVL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ +++YY++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKEWGLPVSDRVTLCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMV 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIEF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R G+ V RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCNSDVER----VEGEAVT--RCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+FTL + K+ + G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFTL------TAGKLTGLDRMGPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + A E +I L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLE--ALEAASI--------EELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F+ N + LL + +P + E+ + S K +V TG+L + R A Sbjct: 559 HVFNFFAEESNREVIVQLLAQGIHWPAPVVINAEE-IDSPFAGKTVVLTGSLSLMSRDDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T+LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 618 KARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 669 >gi|262280095|ref|ZP_06057880.1| DNA ligase [Acinetobacter calcoaceticus RUH2202] gi|262260446|gb|EEY79179.1| DNA ligase [Acinetobacter calcoaceticus RUH2202] Length = 692 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 266/721 (36%), Positives = 394/721 (54%), Gaps = 59/721 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ R+ L Q I+ H+ YY +P I DSEYD L + A+ +P+ +S+ P Sbjct: 20 IEQMRQ----LIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEQVQSDSPT- 74 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 K+GG+ VTH +P LSL ++N EDL F R+ ++ + + + +E K Sbjct: 75 --TKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVELK 129 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGE 190 +DG I++ YE G + RGDG +GED++ ++ I +P+VL IP ++EVRGE Sbjct: 130 LDGLAISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVRGE 189 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V + K+ F LN + A G K +ANPRNAA+G LR+L+P R L F+ +G+ + Sbjct: 190 VLMPKSGFEKLNADQEAKGDKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCEPN 249 Query: 250 FAK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KVD+ Sbjct: 250 HGLITMHDSLQWLTQLGFEIAERQYLCNSIQEVQQRYEQIQQERPDLQVEIDGMVVKVDD 309 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG + Sbjct: 310 LKQQQQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTV 369 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +N TLHN I L D+RVGD V V R G+VIPKV + R PDA+ Sbjct: 370 SNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWPEFRSPDAEIV 418 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGLG Sbjct: 419 HLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGD 472 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + ++ ADI+ L ++T + I G+ SV NL D+I + Sbjct: 473 RWVESLLHLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASKKT 524 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGIR VG AR LA + + + A D +L + P VGDI Sbjct: 525 TLARFIYALGIRGVGETTARMLANTFQTLE----------ALKAADVEALKKTPDVGDIT 574 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664 A+ I +F+ P NI ++ L+ + G H ++ + + V TGTL+++ R Sbjct: 575 AEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRD 629 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y T Sbjct: 630 QATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIIVMNETDFLSLMASYGQT 689 Query: 725 L 725 L Sbjct: 690 L 690 >gi|238759468|ref|ZP_04620632.1| DNA ligase [Yersinia aldovae ATCC 35236] gi|238702365|gb|EEP94918.1| DNA ligase [Yersinia aldovae ATCC 35236] Length = 670 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 253/711 (35%), Positives = 413/711 (58%), Gaps = 49/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L ++ P Sbjct: 1 MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELVTNDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ +++ E F R++ + K + F E K Sbjct: 60 --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKSVEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++A +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 MPLAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + L + + G PV++ V+ ++++Y +++ R+ L +DIDG+V KVD+ Sbjct: 236 -PRSHIARLMQFKAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 DLQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D Q Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDTQEIV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP+C S D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPEHCPVCGS----DIERIEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + + + PAD+FTL + K+ + G S NL ++ K + + Sbjct: 458 IIEQLVEKQ----YVENPADLFTL------TAGKLTGLDRMGPKSAQNLIVALEKAKQTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA + ++N A N+ A + D +L V VG+++A Sbjct: 508 FARFLYALGIREVGEATAANLAAH---FRNLA----NLRAADID---ALKSVQDVGEVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + ++ F N +EAL + +S + + + S K +V TG+L + R +A+ Sbjct: 558 KHVMNFLNEEHNQKVIEALEQVISWPEPQQIVVEEIDSPFAGKTVVLTGSLTMLSRDEAK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 618 DRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668 >gi|226953496|ref|ZP_03823960.1| DNA ligase [Acinetobacter sp. ATCC 27244] gi|226835781|gb|EEH68164.1| DNA ligase [Acinetobacter sp. ATCC 27244] Length = 675 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 267/719 (37%), Positives = 399/719 (55%), Gaps = 59/719 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ R+ L Q I+ H+ YY +P I DSEYD L + A+ +P+ +++ P Sbjct: 7 IEQMRQ----LIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTPT- 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 NK+GG+ VTH +P LSL ++N E+L F RI ++ + + + +E K Sbjct: 62 --NKVGGQALSKFESVTHVVPMLSLGNVFNQEELFAFARRID---ERLPNQKVQYEVELK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGE 190 +DG I++ YE G V RGDG +GED++ ++ I +P+VLS IP+++EVRGE Sbjct: 117 LDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSGQSQAIPQLLEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V + K F LN + A G K +ANPRNAA+G LR+L+P +R L F+ +G+ + Sbjct: 177 VLMPKQGFEKLNADQAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQPH 236 Query: 250 FA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ L + GF + + + Y +++ R L +IDG+V KVD+ Sbjct: 237 HGLATMHDSLHWLTKFGFEIAERQYLCESIEEVQQRYEQIQQERPDLNVEIDGMVVKVDD 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+QLG +R PRW ++KF + A T++ +ID Q+GRTG LTPVARL PV +GG + Sbjct: 297 LKQQQQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +N TLHN I L D+RVGD V V R G+VIPKV + R DA+ Sbjct: 357 SNVTLHNIGEIHRL-----------DVRVGDTVSVYRTGDVIPKVEKVWAEFRPTDAEIV 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGLG Sbjct: 406 HLPTNCPVCDSPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGD 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + ++ ADI+ L T K+ I G+ SV NL D+I+ + Sbjct: 460 RWVESLLHLD----LLKDVADIYHL----HTHREKLLTIEKMGEKSVQNLIDAIDASKKT 511 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI+ LGIR VG AR LA N Q ++ + A + + SL + P VGDI Sbjct: 512 TLARFIYGLGIRGVGETTARMLA-------NTFQTLDALKAADVE---SLKKTPDVGDIT 561 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRH 664 A+ I +F+Q P NI ++ L+ + G H ++ + + V TGTL+ + R Sbjct: 562 AEWIADFFQAPHNIEVLDRLM-----AAGIHWDAPTAPTRQPLNGESWVVTGTLESMGRD 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +A + + LGA VS +S KT ++ G+ GSKLEKAQ+L +++MNE++FL L QY Sbjct: 617 EATQRLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAQKLEIRVMNEQEFLDFLAQYQA 675 >gi|295676829|ref|YP_003605353.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002] gi|295436672|gb|ADG15842.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002] Length = 687 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/728 (35%), Positives = 398/728 (54%), Gaps = 53/728 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 R +P A S R + L E+ + + YY +P + D+EYD L + + I P Sbjct: 3 RSSVPSFATSAPAERA--AWLRAELEHANYAYYVLDQPDLPDAEYDKLFKELERIEAEHP 60 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 DL P+ P ++GGE V H P LSL + ED+ F RI Sbjct: 61 DLIV---PDSPTQRVGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRIGDALGNNAS 117 Query: 124 NS---IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSL 179 + + E K DG I++RY G FV A+ RGDG +GE+V+ +R I +IP ++ Sbjct: 118 EPPVPVDYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLKLKGK 177 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLN 237 +P +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ + IT R L+ Sbjct: 178 RVPHVLDVRGEVLMFKRDFERLNERQRAAGQREFANPRNAAAGSLRQLD-SKITAQRPLS 236 Query: 238 FFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 FF +G+G I E+L + +G PVN G++ +++ + R LP Sbjct: 237 FFAYGIGVLDGIEMPPTHSELLDWYKEMGLPVNGERAVVQGAKGLLGFFHAVGEKRDRLP 296 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 YDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVA Sbjct: 297 YDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVA 356 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 RLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV Sbjct: 357 RLEPVFVGGATVTNATLHNEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVSA 405 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 +++ R DA+ F P+ CP+C S + R + A RCTGGL C AQ+ + L HF Sbjct: 406 LLDRRPTDAREFVMPTQCPVCGSAIERLPDE------AIARCTGGLFCPAQRKQALWHFA 459 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 R A +I+GLG++ +D + +R PAD+F L + + F D S Sbjct: 460 QRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFADKSAQ 509 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S + ND Sbjct: 510 NLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASLEALLEVND--- 566 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLV 653 VG ++A++I +F+ N +E L + P K + + +V Sbjct: 567 -------VGPVVAESIHQFFAEDHNRTVIEQLRAPGRVTWPEGPPAPKAPQGVLAGQTVV 619 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGTL + R A+E + GA V+ +S+KT ++ G + GSKL KA++LG+ +++E+ Sbjct: 620 LTGTLPNLSREDAKEMLEAAGAKVAGSVSKKTSYVVAGADAGSKLAKAEELGIPVLDEDG 679 Query: 714 FLFLLQQY 721 LL+ + Sbjct: 680 MRKLLEGH 687 >gi|90410985|ref|ZP_01218999.1| DNA ligase [Photobacterium profundum 3TCK] gi|90328198|gb|EAS44509.1| DNA ligase [Photobacterium profundum 3TCK] Length = 697 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 250/708 (35%), Positives = 409/708 (57%), Gaps = 47/708 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +++L +L ++++YH YY P I D+EYD + ++ A+ P+L + P+ + Sbjct: 32 QQQLDTLREQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEADHPELMSVDSPS---QR 88 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG S +V H +P LSL+ +N E+L F R+ + + + EPK+DG Sbjct: 89 VGGMPLDSFTQVKHELPMLSLDNAFNDEELHAFEKRLLD--RLITAGQVSYCCEPKLDGL 146 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ YE G V AA RGDG +GE+++ +R I +IP ++ P +EVRGEV++ K Sbjct: 147 AVSLMYENGVLVQAATRGDGATGENITTNVRTIRSIPLKLQGEGWPLRLEVRGEVFMPKK 206 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254 F LN + G K +ANPRNAA+G LR+L+ TR L+F+ + +G + A Q Sbjct: 207 GFDELNARALKKGDKAFANPRNAAAGSLRQLDSKIAATRPLSFYAYSVGVVEGMDLADSQ 266 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 Y+ L +++ G P+ +RQ T +++YY ++ R +L Y+IDG+V KVD+ Q+Q Sbjct: 267 YDRLVQLKGWGIPMCPEIRQLKTIKDVIAYYQDIGERRQSLSYEIDGVVIKVDDVETQEQ 326 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEP+ +GG ++NATLH Sbjct: 327 LGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLH 386 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D +V R G + +GD V+++RAG+VIP++V ++ + R +A FP C Sbjct: 387 NAD---------EVARLG--VMIGDTVIIRRAGDVIPQIVSVVESRRPANALSIIFPETC 435 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S V R G+ VA RC+GGL C AQ+ E LKHFVSR A +++G G++ ++ Sbjct: 436 PVCKSNVER----VEGEAVA--RCSGGLFCQAQRKEALKHFVSRKALDVDGCGEKVIEQL 489 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E + PA +F L T ++ G S L DS+ + +L RFI Sbjct: 490 VDRE----MVTTPAGLFKLSAGVVTVLDRM------GPKSAQKLVDSLANSKETTLPRFI 539 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +SLGIR VG A +LA ++ + + I A + + L+ VP VG+++A ++ Sbjct: 540 YSLGIREVGEATAANLANHF-------ETLEAITAASKE---QLLVVPDVGEVVANNLLN 589 Query: 615 FYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ N+ VE L+ P+I + E+ V ++ K +V TG+L ++ R A+ + Sbjct: 590 FFREAHNMDVVEDLIAVGIHWPAIEKPEEGVELPLDGKVVVLTGSLSQLTRSDAKAALQA 649 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA V+ +S+KTD+++ G+ GSKL KAQ+L ++I +E+ + L+ + Sbjct: 650 LGAKVTGSVSKKTDLLVAGEAAGSKLTKAQELDIEIWDEQALVDLMNR 697 >gi|322613832|gb|EFY10771.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617441|gb|EFY14340.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624929|gb|EFY21758.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629628|gb|EFY26404.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633942|gb|EFY30679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635621|gb|EFY32332.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639981|gb|EFY36651.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644326|gb|EFY40867.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322655311|gb|EFY51620.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658357|gb|EFY54623.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664357|gb|EFY60554.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668412|gb|EFY64568.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673252|gb|EFY69358.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676644|gb|EFY72712.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683394|gb|EFY79408.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685720|gb|EFY81713.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192602|gb|EFZ77831.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196835|gb|EFZ81978.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202141|gb|EFZ87199.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208024|gb|EFZ92969.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212850|gb|EFZ97659.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217119|gb|EGA01841.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219619|gb|EGA04102.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323229192|gb|EGA13316.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235493|gb|EGA19577.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237321|gb|EGA21384.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245552|gb|EGA29550.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248968|gb|EGA32891.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253065|gb|EGA36897.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255865|gb|EGA39610.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261411|gb|EGA44996.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266454|gb|EGA49942.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269716|gb|EGA53166.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 671 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 251/716 (35%), Positives = 406/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + +GA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|224583040|ref|YP_002636838.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|254781413|sp|C0PZB4|DNLJ_SALPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|224467567|gb|ACN45397.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 671 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 251/716 (35%), Positives = 405/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|333016518|gb|EGK35849.1| DNA ligase, NAD-dependent [Shigella flexneri K-304] Length = 671 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 252/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARCTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKLAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|238756322|ref|ZP_04617636.1| DNA ligase [Yersinia ruckeri ATCC 29473] gi|238705475|gb|EEP97878.1| DNA ligase [Yersinia ruckeri ATCC 29473] Length = 674 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 248/716 (34%), Positives = 407/716 (56%), Gaps = 49/716 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L + P+L ++ P Sbjct: 1 MESIIQQINQLRASLRHHEHQYHVLDAPEIPDAEYDRLMGELRELEAQHPELITADSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + V H +P LSL+ +++ E F R++ + K + F E K Sbjct: 60 --QRVGAAPLDAFEPVRHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ + AA RGDG +GE+++A +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELIRAATRGDGTTGENITANVRTIHAIPLRLQGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIF 250 + + F LND+ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNDDARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +E LQ+ + G PV+ V++ ++++Y++++ R+ L +DIDG+V KVD Sbjct: 236 PSSHFERLQQFKAWGLPVSERVQRCTGVDQVIAFYHQVEQDRAHLGFDIDGVVIKVDALD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQMTQVREVEFQVGRTGAITPVARLEPVLVAGVMVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP++V ++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVMVRRAGDVIPQIVGVVIDERPADAREIIF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S D+ G+ VA RC+GGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PEHCPVCGS----DIERIEGEAVA--RCSGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E + PAD+F L S + + G S NL ++ K + + Sbjct: 459 IEQLVEKE----YVHNPADLFNL------SAGILTGLDRMGPKSAQNLVAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + +N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAAHLAAHFRTLENL----------RAADVEALKAVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 ++ F N ++ L + +S P + + S K +V TG+L + R +A+ Sbjct: 559 HVLNFLSEEHNQQVIQQLEQVISWPEPQL-IIATEIDSPFAGKTVVLTGSLTILSRDEAK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + + Sbjct: 618 DRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIQVIDEAEMIRLLGESES 673 >gi|114563631|ref|YP_751144.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400] gi|122299383|sp|Q080K9|DNLJ_SHEFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114334924|gb|ABI72306.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400] Length = 670 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 403/712 (56%), Gaps = 53/712 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + E+ L I+ H+ YY P I D+EYD L +R + +P + + P + Sbjct: 5 QTEMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELEGDYPQF---KSVDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG ++TH P LSL+ + D F RI K DN + + EPK+DG Sbjct: 62 VGGIALQKFAQITHLKPMLSLDNAFEQADFAAFNKRI----TDKVDN-VDYVCEPKLDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 ++I Y G AA RGDG GED++A +R I +IP ++ P+++EVRGEV++ K Sbjct: 117 AVSITYRFGVLERAATRGDGSVGEDITANVRTIRSIPLKLRGEGFPDLVEVRGEVFMPKA 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT---SEIFAK 252 F LN I+ G K + NPRNAA+G LR+L+ +R L F+ + LG S+ Sbjct: 177 AFEVLNQRQISKGDKVFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGESQPMQT 236 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Y L +++ G PV++ V+ ++ + +YY ++ + RS L Y+IDG+V KV++ + Q Sbjct: 237 SHYGQLTQLQQWGVPVSSEVKVTDSLEKVYAYYADIMARRSALEYEIDGVVIKVNDIAKQ 296 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG A++PRW I++KF ++ T L +D Q+GRTG +TPVARL+P+ +GG ++NAT Sbjct: 297 QTLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLKPIFVGGVTVSNAT 356 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I L +++GD V+++RAG+VIP++V I+ +R DAQ FP Sbjct: 357 LHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPDDAQDIIFPQ 405 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+CQS V R G+ VA RC+GGL C AQ+ E +KHF SR A NI+G+G + ++ Sbjct: 406 HCPVCQSIVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALNIDGMGDKIVE 459 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 E ++ PAD+F+L +S T ++ + S TN+ +I + + +L R Sbjct: 460 QLIDKE----LVKTPADLFSL---TASSVTMLDRM---AMKSATNIVAAIKQAKTTTLAR 509 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F++SLGIR VG A +LA+++ ++ L+ V VGDI+A+ I Sbjct: 510 FLYSLGIREVGEATAANLAQHFTEFERI----------RTASVEQLLEVADVGDIVAKHI 559 Query: 613 VEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +F+ P NI ++ LL+ P I + +++ S ++ + V TGTL ++ R+ A+ + Sbjct: 560 RQFFSQPHNIEVIDQLLEAGITWPVIEQADESQLS-LKGQTWVLTGTLTQLNRNDAKAQL 618 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S+ TD ++ G+ GSKL KA++LGVK+++E+ + LL N Sbjct: 619 QALGAKVAGSVSKNTDCLVAGEAAGSKLAKAEELGVKVIDEQALMDLLNAAN 670 >gi|91775756|ref|YP_545512.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT] gi|123254532|sp|Q1H1G6|DNLJ_METFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91709743|gb|ABE49671.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT] Length = 693 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/720 (36%), Positives = 391/720 (54%), Gaps = 63/720 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ +L I +D YY + P + DSEYD + R A+ A P+L P+ P ++ Sbjct: 19 EKVEALRATIRRYDYEYYVLNAPSVPDSEYDRVFRELKALEDAHPELV---TPDSPTQRV 75 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNI--EDLRKFITRI-YRFWQKKDDNSIFFTLEPKID 135 GG L V H +P LS+E + + F R+ + +D I + E K D Sbjct: 76 GGAAMAELMPVRHHVPMLSIETETDTTPQGAYNFDARVRKKLGLLPEDGPIEYAAELKFD 135 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++RYE G V AA RGDG GEDV+ IR + IP L PE++EVRGEVY+S+ Sbjct: 136 GLAMSLRYEHGLLVQAATRGDGEVGEDVTHNIRTMRQIPLQLHGEAPEVLEVRGEVYMSR 195 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG- 253 DF N G+ NPRN A+G +R+L+P R L+FF +GLG+T KG Sbjct: 196 PDFERYNARQREHGKPTLVNPRNGAAGSIRQLDPRLAAQRPLSFFAYGLGET-----KGW 250 Query: 254 -----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++L ++ LG PV N + +++ + + R LPYDIDG+VYKV+ Sbjct: 251 QVPLTHAQVLDALKALGLPVCNERAVGMGAEALAAFHQAISAKRDQLPYDIDGVVYKVNR 310 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ++LG R+R P W ++HKF ++ T L ID+Q+GRTG +TPVARL+PV +GG + Sbjct: 311 LDLQRELGFRSREPNWAVAHKFPAQEEMTVLEHIDVQVGRTGAITPVARLKPVFVGGVTV 370 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHN+D I +D+R+GD V+V+RAG+VIP+VV +I R +QP+ Sbjct: 371 TNATLHNQDEID-----------RKDVRIGDTVVVRRAGDVIPEVVSVIKERRPAGSQPY 419 Query: 429 ----SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + CP+C S VR P+ AA RCTGGL C+AQ+ + + HF SR A +IE Sbjct: 420 ILLDAIGGLCPVCGSHAVR--LPEE----AAVRCTGGLFCAAQRKQAILHFASRRAMDIE 473 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV---SVTNLYDS 541 GLG++ +D + AD++ +E + G + S NL D+ Sbjct: 474 GLGEKLVDQLVDQN----MVETLADLY------DPGKINLETLSGLDRMAMKSAQNLLDA 523 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + K + +L RFI++LGIR+VG A+ LA+++ + A D +L +V Sbjct: 524 LQKSKQATLNRFIYALGIRNVGEATAKDLARHF----------GRLDALQAADVDTLQQV 573 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 P VG ++A++I EF+ N + L + S + SS++E K V TGTL Sbjct: 574 PDVGPVVARSIAEFFAEEHNREVIRKLRDAGIHWSETDGQPASSSKLEGKTFVLTGTLPT 633 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R +A+E + G VS +S+KT ++ G + GSKL KAQ+LG+ I++EE L LL + Sbjct: 634 MSRDEAKEKIEAAGGKVSGSVSKKTSYVVAGSDAGSKLAKAQELGLAILDEEGLLSLLAE 693 >gi|333001543|gb|EGK21111.1| DNA ligase, NAD-dependent [Shigella flexneri VA-6] gi|333002206|gb|EGK21770.1| DNA ligase, NAD-dependent [Shigella flexneri K-272] gi|333016032|gb|EGK35364.1| DNA ligase, NAD-dependent [Shigella flexneri K-227] Length = 671 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 252/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKLAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|332678645|gb|AEE87774.1| DNA ligase [Francisella cf. novicida Fx1] Length = 678 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 268/728 (36%), Positives = 407/728 (55%), Gaps = 65/728 (8%) Query: 6 LIPIEALSIEQ---ARKELSS----LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 + P E SI+ A+ EL + L +S Y+ KPII DS+YD L R + Sbjct: 1 MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL 60 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 + P + N L+++GGE+ + H SL ++++E+LR F +I Sbjct: 61 VNDNPQF---KPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYGKI---- 113 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + I EPK+DG I+I Y+ GKF YA RGDG GE VS ++ I +P L+ Sbjct: 114 ----EYDIELECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLN 169 Query: 179 L-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236 N PE +EVRGE+ + K FL+LN+ M K +ANPRNAA+G +R L+ + R L Sbjct: 170 TSNPPEELEVRGEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPL 229 Query: 237 NFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + +G+G S+ F + Q+E++ ++ GF +++ + A F + Y+++M R+ Sbjct: 230 KLYSYGIGYFSKDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRAD 289 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDGLV+KV+ LQ +G AR P+W +++KF ++ + +L+++ Q+GRTG +TP Sbjct: 290 LAYDIDGLVFKVNNIKLQDIIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITP 349 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +++NATLHN + IK +DIRV DRV+V+RAG+VIP+VV Sbjct: 350 VARLKPVAVGGVIVSNATLHNINEIK-----------RKDIRVSDRVIVRRAGDVIPEVV 398 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + R PDAQ P+ CP+C S + ++N + A +RCTGG C AQ ERLKH Sbjct: 399 KSLPQYRKPDAQVVEMPTSCPVCDS-AIENVNDQ-----AIYRCTGGWHCQAQTTERLKH 452 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSR A +I+ LG + ++ A I+ PADI+ L Q T ++ G S Sbjct: 453 FVSRKAMDIDKLGAKLIEQLV----AANLIKYPADIYKLNFDQLTGLERM------GAKS 502 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 N+ DSI K + SL RFIF++GI+ +G + LA ++ S ++F + Sbjct: 503 SQNVLDSIKKSKTPSLARFIFAIGIKDIGEVSSDVLANHFGSLESF----------RDAK 552 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENK 650 + LI + +G+I+A IV F+ + NI VE LL K +P H N S K Sbjct: 553 FEELIEINDIGEIMANNIVSFWHDSLNIKIVEELLAIGIKIQNPVKVEHAYNES--FTGK 610 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+ + R + + + +GA V++ +S+KTD++I G+N GSKL KAQ LGV+++ Sbjct: 611 TVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGENAGSKLTKAQDLGVEVIF 670 Query: 711 EEQFLFLL 718 EE LL Sbjct: 671 EEDLQNLL 678 >gi|145630192|ref|ZP_01785974.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] gi|144984473|gb|EDJ91896.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] Length = 670 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 261/715 (36%), Positives = 414/715 (57%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 5 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 62 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 234 VDLPTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ + Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFIF+LGIR VG A +LA ++ + + + L +VP VG+ Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLDTL----------KDANLEELQQVPDVGE 555 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+++ G H + V +SE ++K +V TGTL + Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIEQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665 >gi|152997408|ref|YP_001342243.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1] gi|190359264|sp|A6W0S9|DNLJ_MARMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150838332|gb|ABR72308.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1] Length = 672 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 254/711 (35%), Positives = 400/711 (56%), Gaps = 49/711 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L Q+++ + Y+ +PI+ D+ YD R+ +I P+ +++ P ++ Sbjct: 4 QQMLDLIQQLNDYSYAYHVKDEPIVPDAVYDRDYRQLQSIEAEHPEWIQADSPT---QRV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + + V H++P LSL+ ++ E L F RI + + + + EPK+DG Sbjct: 61 GEKPDSGFTNVAHTVPMLSLDNAFDNESLADFDQRIRKLLNAE---QVTYCCEPKLDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 I++RYE+G+ V RGDG SGED+++ I+ I ++P ++ + P ++EVRGE+Y+ K Sbjct: 118 ISLRYEEGRLVRGVTRGDGLSGEDITSNIKTIYSVPLKLRTKTPPAVLEVRGEIYMPKEG 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF-AKGQY 255 F LN + G K + NPRNAA+G LR+L+P R L + +G + Y Sbjct: 178 FEKLNALAVEQGEKTFVNPRNAAAGSLRQLDPKVTAKRPLVMCAYSIGYVEGWEQPESHY 237 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 L ++ GF N+ + A G + YY ++ R++L YDIDG+VYKVD+ +LQ QL Sbjct: 238 AGLLQLSEWGFRTNDLMITAEGAQGCIDYYEKLNEKRASLSYDIDGIVYKVDQIALQNQL 297 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G AR+PRW I+ KF ++ TR+L +D Q+GRTG +TPVARLEPV +GG ++NATLHN Sbjct: 298 GFIARAPRWAIARKFPAQEEMTRILGVDFQVGRTGAITPVARLEPVFVGGVTVSNATLHN 357 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 +D I L ++V D V+V RAG+VIPKVV +++++R +A FP CP Sbjct: 358 KDEIARL-----------GVKVNDFVIVHRAGDVIPKVVQVVIDKRPENATEVVFPEACP 406 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S DL G+ V RCTGGL C AQ E LKHFVSR A +I+GLG + ++ Sbjct: 407 VCGS----DLEQVEGEAVI--RCTGGLVCGAQLKESLKHFVSRKAMDIDGLGDKLIEQLV 460 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + ++ P DIFTL ++ T + ++ G SV L SI ++ RFI+ Sbjct: 461 DQQ----LVKTPVDIFTLSEKKDT----LLSMERMGQKSVEKLLASIEIAKSTQFNRFIY 512 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 SLGIR VG AR+L Y+ E+++++A + + +L+ V VG I+AQ + F Sbjct: 513 SLGIREVGEATARALTSYF-------TELDDLMAADQE---TLVEVEDVGPIVAQHVRLF 562 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQ 672 + N ++ LL + + ++ VS++ + K V TG+L + R + ++ + Sbjct: 563 FDQELNRDTIKGLL--AAGVVWEKKQQVSADELPLSGKTYVVTGSLSQFSRDQVKDKLQA 620 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 LGA VS +S KTD ++ G+ GSKL KAQ L V I++E + LL ++ Sbjct: 621 LGAKVSGSVSAKTDCLVAGEKAGSKLTKAQSLNVPIIDEAGVIALLTEHGA 671 >gi|262394922|ref|YP_003286776.1| DNA ligase [Vibrio sp. Ex25] gi|262338516|gb|ACY52311.1| DNA ligase [Vibrio sp. Ex25] Length = 690 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 258/712 (36%), Positives = 404/712 (56%), Gaps = 53/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + L L++ + YH YY P I D+EYD L R I PDL + P+ Sbjct: 23 ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPS-- 80 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI-FFTLEPK 133 ++GG+ + +VTH +P LSL+ ++ +L F R ++ S+ + EPK Sbjct: 81 -QRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQ---ERVGSQSVKEYCCEPK 136 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++ +R I IP L N P +EVRGEV+ Sbjct: 137 LDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVF 196 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G + +E+ Sbjct: 197 MPKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGAEL 256 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A YE +++ G P+ ++ + + +YY ++ R LPY+IDG+V K+D+ Sbjct: 257 -AASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDDI 315 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++ Sbjct: 316 AVQERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVS 375 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +++GD V+++RAG+VIP+VV +I R A+ Sbjct: 376 NATLHNADEIERL-----------QVKIGDHVVIRRAGDVIPQVVSVIKERRPETARDII 424 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ V RCTGGL C AQ+ + LKHFVSR A +++GLG + Sbjct: 425 FPTQCPVCGSHVER----IEGEAVT--RCTGGLVCQAQRKQALKHFVSRKALDVDGLGDK 478 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG-FGDVSVTNLYDSINKRRNI 548 ++ E ++ PAD+F L + I +L G S N+ +++ K + Sbjct: 479 VIEQLVDRE----MVKTPADLFKL-------SAGILTVLDRMGPKSAQNIVNALEKSKET 527 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA ++ + + A N + LI V +G ++ Sbjct: 528 TLPRFLYSLGIREVGEATAANLAMHFKTLE----------AIQNANEEQLIEVQDIGAVV 577 Query: 609 AQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 AQ I F+ +N V+ LL++ P I E+ +E K +V TGTL ++ R +A Sbjct: 578 AQHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTEA 637 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 638 KEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELM 689 >gi|331663971|ref|ZP_08364881.1| DNA ligase, NAD-dependent [Escherichia coli TA143] gi|331059770|gb|EGI31747.1| DNA ligase, NAD-dependent [Escherichia coli TA143] Length = 671 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 252/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|253996456|ref|YP_003048520.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8] gi|253983135|gb|ACT47993.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8] Length = 677 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 259/718 (36%), Positives = 396/718 (55%), Gaps = 57/718 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L + A + L I+ +D YY P + DSEYD + R + A+P L ++ P Sbjct: 4 LKLSSAELRVLELRGLIARYDYEYYVLDAPSVPDSEYDKIYRELQTLEQAYPSLVVADSP 63 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++ G + +TH LSL + +L F RI + + +E Sbjct: 64 T---QRVSGTATNAFGSITHRQAMLSLNNAFEQSELEAFDKRIREALGVA---QVEYAVE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 PK DG IT+ YE G F+ A RGDG++GEDV+ +R + IP L+ N P+++EVRGE Sbjct: 118 PKFDGLAITLTYEHGVFIQGATRGDGYTGEDVTHNLRTLRAIPMRLNCENPPQLLEVRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249 V + K DF LN +A G K +ANPRNAA+G LR+L+ TR L FF +GLG + Sbjct: 178 VLMLKRDFDKLNQAQLAKGEKLFANPRNAAAGSLRQLDAKVTATRPLTFFAYGLGVAEGV 237 Query: 250 FAKGQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A + + + L FPV++ G+ YY ++ R LP+DIDG+VYKV++ Sbjct: 238 PALTSHGAAMDYLASLHFPVSSARAVVRGVQGLSDYYEKIGQQRQQLPFDIDGVVYKVNQ 297 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+ Q +LG +R+PRW ++HKF ++A T + DI +Q+GRTG +TPVARL+PV +GG + Sbjct: 298 FNQQNELGFVSRAPRWAVAHKFPAQEALTLVEDITVQVGRTGAITPVARLKPVFVGGVTV 357 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHNED I+ +DI +GD V V+RAG+VIP+VV ++V +R A+ F Sbjct: 358 TNATLHNEDEIR-----------RKDILIGDTVSVRRAGDVIPEVVSVVVEKRPAHARRF 406 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C S +++ + A RCTGGL C AQ+ + + H+ SR A +IEGLG+ Sbjct: 407 EMPTVCPECGSHILKQADE------AVARCTGGLFCPAQRKQAITHYASRRAMDIEGLGE 460 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +D + A + AD+++L + N+ + S N+ D++N ++ Sbjct: 461 KLVDQLVE----ANLVHTLADVYSL------DIHTLSNLERMAEKSAQNILDALNASKDT 510 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LG+R+VG A+ LAK++ +N ++A + +D L+ V VG I+ Sbjct: 511 TLARFIYALGMRNVGEATAKDLAKHF-------GNLNALMAASIED---LLEVNDVGPIV 560 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRH------EKNVSSEIENKKLVFTGTLQKIQ 662 A++I F+ N + ALL + G H ++ + + K V TGTL + Sbjct: 561 AESIKNFFSEEHNKSVIAALL-----NAGIHWVETEGKQQATGNLVGKTFVLTGTLPNLA 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R A+ + G VS +S+KTD ++ G + GSKLEKAQ LGV I++E L +L + Sbjct: 616 RDDAKALIEAAGGKVSGSVSKKTDFVVAGADAGSKLEKAQLLGVAIIDEANLLAVLAE 673 >gi|254781232|sp|B0VU02|DNLJ_ACIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 678 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/723 (36%), Positives = 397/723 (54%), Gaps = 55/723 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+ +++ P Sbjct: 1 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQADSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 K+GG+ VTH +P LSL ++N EDL F R+ ++ + + + +E Sbjct: 61 T---TKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL IP ++EVR Sbjct: 115 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P R L F+ +G+ + Sbjct: 175 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 234 Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 235 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 295 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 355 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 403 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 404 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + + ++ ADI+ L ++T + I G+ SV NL D+I + Sbjct: 458 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA N Q + + A N + +L + P VGD Sbjct: 510 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGD 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662 I A+ I +F+ P NI ++ L+ + G H ++ + + V TGTL+++ Sbjct: 560 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 614 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R +A + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y Sbjct: 615 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 674 Query: 723 TTL 725 TL Sbjct: 675 QTL 677 >gi|296046585|gb|ADG86434.1| NAD-dependent DNA ligase [Francisella novicida] Length = 670 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 399/712 (56%), Gaps = 53/712 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + E+ L I+ H+ YY P I D+EYD L +R + +P + + P + Sbjct: 5 QTEMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELERDYPQF---KSVDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG ++TH P LSL+ + D F RI +S+ + EPK+DG Sbjct: 62 VGGIALQKFAQITHLKPMLSLDNAFEQADFAAFNKRI-----TDKVDSVDYVCEPKLDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 ++I Y G AA RGDG GED++A +R I +IP ++ P+++EVRGEV++ K Sbjct: 117 AVSITYRFGVLERAATRGDGSVGEDITANVRTIRSIPLKLRGEGFPDLVEVRGEVFMPKA 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT---SEIFAK 252 F ALN I+ G K + NPRNAA+G LR+L+ +R L F+ + LG S+ Sbjct: 177 AFEALNQRQISKGDKVFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGESQPMQT 236 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Y L +++ G PV++ V+ + + +YY ++ + RS L Y+IDG+V KV++ + Q Sbjct: 237 SHYGQLTQLQQWGIPVSSEVKVTDLLEKVYAYYADIMARRSALEYEIDGVVIKVNDIAKQ 296 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG A++PRW I++KF ++ T L +D Q+GRTG +TPVARL+P+ +GG ++NAT Sbjct: 297 QTLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLKPIFVGGVTVSNAT 356 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I L +++GD V+++RAG+VIP++V I+ +R DAQ FP Sbjct: 357 LHNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPDDAQDIIFPL 405 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+CQS V R G+ VA RC+GGL C AQ+ E +KHF SR A NI+G+G + ++ Sbjct: 406 HCPVCQSIVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALNIDGMGDKIVE 459 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 E ++ PAD+F+L + + I + S TN+ +I + +L R Sbjct: 460 QLIDKE----LVKTPADLFSL------TASSITMLDRMAMKSATNIVAAIKHAKATTLAR 509 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F++SLGIR VG A +LA+++ ++ L+ V VGDI+A+ I Sbjct: 510 FLYSLGIREVGEATAANLAQHFAEFERI----------RTASVEQLLEVADVGDIVAKHI 559 Query: 613 VEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +F+ P NI +E LL+ P I + +++ S ++ + V TGTL ++ R+ A+ + Sbjct: 560 RQFFAQPHNIEVIEQLLEAGITWPVIEQADESQLS-LKGQTWVLTGTLTQLNRNDAKAQL 618 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S+ TD ++ G+ GSKL KA++LGVK+++E+ + LL N Sbjct: 619 QALGAKVAGSVSKNTDCLVAGEAAGSKLAKAEELGVKVIDEQALMDLLNAAN 670 >gi|126640855|ref|YP_001083839.1| DNA ligase [Acinetobacter baumannii ATCC 17978] gi|322506977|gb|ADX02431.1| DNA ligase [Acinetobacter baumannii 1656-2] gi|323516844|gb|ADX91225.1| DNA ligase, NAD-dependent [Acinetobacter baumannii TCDC-AB0715] Length = 669 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/714 (36%), Positives = 393/714 (55%), Gaps = 55/714 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L Q I+ H+ YY +P I DSEYD L + A+ +P+L +++ P K+GG Sbjct: 1 MRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPT---TKVGG 57 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + VTH +P LSL ++N EDL F R+ ++ + + + +E K+DG I+ Sbjct: 58 QALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVELKLDGLAIS 114 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISKND 197 + YE G V RGDG +GED++ ++ I +P+VL IP ++EVRGEV + K+ Sbjct: 115 LWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSG 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA-KGQY 255 F LN + A G K +ANPRNAA+G LR+L+P R L F+ +G+ + + Sbjct: 175 FEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMH 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + LQ + LGF + N+ + Y +++ R L +IDG+V KVD+ Q+QL Sbjct: 235 DSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG ++N TLHN Sbjct: 295 GFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 I L D+R+GD V V R G+VIPKV + R +A+ P CP Sbjct: 355 IGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCP 403 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++ Sbjct: 404 VCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLL 457 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + + ++ ADI+ L ++T + I G+ SV NL D+I + +L RFI+ Sbjct: 458 RLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASKKTTLARFIY 509 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG AR LA N Q + + A N + +L + P VGDI A+ I +F Sbjct: 510 ALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGDITAEWIADF 559 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQRHKAQEYVT 671 + P NI ++ L+ + G H ++ + + V TGTL+++ R +A + + Sbjct: 560 FLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQ 614 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y TL Sbjct: 615 ALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYGQTL 668 >gi|169634132|ref|YP_001707868.1| DNA ligase [Acinetobacter baumannii SDF] gi|169152924|emb|CAP01965.1| DNA ligase [Acinetobacter baumannii] Length = 691 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/723 (36%), Positives = 397/723 (54%), Gaps = 55/723 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L Q I+ H+ YY +P I DSEYD L + A+ +P+ +++ P Sbjct: 14 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQADSP 73 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 K+GG+ VTH +P LSL ++N EDL F R+ ++ + + + +E Sbjct: 74 T---TKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVE---ERLPNQKVQYEVE 127 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188 K+DG I++ YE G V RGDG +GED++ ++ I +P+VL IP ++EVR Sbjct: 128 LKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVR 187 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV + K+ F LN + A G K +ANPRNAA+G LR+L+P R L F+ +G+ + Sbjct: 188 GEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCE 247 Query: 248 EIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ LQ + LGF + N+ + Y +++ R L +IDG+V KV Sbjct: 248 PNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKV 307 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q+QLG +R PRW ++KF + A T + ID Q+GRTG LTPVARL PV +GG Sbjct: 308 DDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGV 367 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++N TLHN I L D+R+GD V V R G+VIPKV + R +A+ Sbjct: 368 TVSNVTLHNIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAE 416 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGL Sbjct: 417 VVHLPESCPVCASPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGL 470 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ + + ++ ADI+ L ++T + I G+ SV NL D+I + Sbjct: 471 GDRWVESLLRLD----LLKDVADIYHLHEHRET----LLGIEKMGEKSVQNLIDAIEASK 522 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI++LGIR VG AR LA N Q + + A N + +L + P VGD Sbjct: 523 KTTLARFIYALGIRGVGETTARMLA-------NTFQTLEALKAANVE---ALKKTPDVGD 572 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EIENKKLVFTGTLQKIQ 662 I A+ I +F+ P NI ++ L+ + G H ++ + + V TGTL+++ Sbjct: 573 ITAEWIADFFLAPHNIEVLDRLI-----AAGIHWDAPTAPTRQPLNGESWVLTGTLEQMT 627 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R +A + + LGA VS +S KT ++ G+ GSKLEKA +LG+ +MNE FL L+ Y Sbjct: 628 RDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 687 Query: 723 TTL 725 TL Sbjct: 688 QTL 690 >gi|218705919|ref|YP_002413438.1| NAD-dependent DNA ligase LigA [Escherichia coli UMN026] gi|293405854|ref|ZP_06649846.1| DNA ligase [Escherichia coli FVEC1412] gi|298381604|ref|ZP_06991203.1| DNA ligase [Escherichia coli FVEC1302] gi|254781326|sp|B7N602|DNLJ_ECOLU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218433016|emb|CAR13911.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026] gi|284922366|emb|CBG35453.1| DNA ligase [Escherichia coli 042] gi|291428062|gb|EFF01089.1| DNA ligase [Escherichia coli FVEC1412] gi|298279046|gb|EFI20560.1| DNA ligase [Escherichia coli FVEC1302] Length = 671 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 252/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|198243638|ref|YP_002216496.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|254781408|sp|B5FQB9|DNLJ_SALDC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|197938154|gb|ACH75487.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624250|gb|EGE30595.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 671 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 249/716 (34%), Positives = 402/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLVLQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + + L +VP VG Sbjct: 505 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATID----------ELQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|51597030|ref|YP_071221.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP 32953] gi|186896113|ref|YP_001873225.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis PB1/+] gi|81638946|sp|Q668M6|DNLJ_YERPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781913|sp|B2K917|DNLJ_YERPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|51590312|emb|CAH21949.1| DNA ligase [Yersinia pseudotuberculosis IP 32953] gi|186699139|gb|ACC89768.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis PB1/+] Length = 670 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 247/710 (34%), Positives = 406/710 (57%), Gaps = 47/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD + ++ + P+L ++ P Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ +++ E F R++ + K + F E K Sbjct: 60 --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP R+ N+P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLV 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D + +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSQCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F Q + K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLF------QLTAGKLTGLDRMGPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNL----------RAADIETLKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +E L K VS + + + S K +V TG+L + R +A++ Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +T LGA VS +S+KT ++I G+ GSKL KAQ+LG+K+++E + + LL Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLL 668 >gi|238792031|ref|ZP_04635667.1| DNA ligase [Yersinia intermedia ATCC 29909] gi|238728662|gb|EEQ20180.1| DNA ligase [Yersinia intermedia ATCC 29909] Length = 670 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 248/710 (34%), Positives = 409/710 (57%), Gaps = 47/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ ++ P+L + P Sbjct: 1 MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRSLEAQHPELITHDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ +++ + F R++ + K + F E K Sbjct: 60 --QRVGAAPLDAFEQVRHEVPMLSLDNVFDEDSYLAFDKRVHD--RLKSAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP R+ NIP+ +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGENIPQRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLMFFCYGVGLLDGGDL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+N V+ ++++Y +++ R++L +DIDG+V KVD Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVKLCTGSDEVIAFYRQVEQDRTSLGFDIDGVVIKVDSLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFQAQEQITQVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L IR+GD V+++RAG+VIP+VV +++ +R D + F Sbjct: 356 ATLHNADEIERL-----------GIRIGDTVIIRRAGDVIPQVVGVVMEQRPQDTKEIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PQHCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L + K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFEL------TAGKLTGLDRMGPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + ++N+ A + D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFCN-------LDNLRAADID---ALKSVPDVGEVVAR 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F N + AL K +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVRNFLSEEHNQKVIAALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 RLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 668 >gi|153948204|ref|YP_001400300.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP 31758] gi|170023674|ref|YP_001720179.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis YPIII] gi|190359300|sp|A7FGC2|DNLJ_YERP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781915|sp|B1JFZ0|DNLJ_YERPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152959699|gb|ABS47160.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758] gi|169750208|gb|ACA67726.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis YPIII] Length = 670 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 247/710 (34%), Positives = 406/710 (57%), Gaps = 47/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD + ++ + P+L ++ P Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ +++ E F R++ + K + F E K Sbjct: 60 --QRVGAAPLDAFEQVEHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP R+ N+P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLV 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D + +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSQCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F Q + K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLF------QLTAGKLTGLDRMGPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNL----------RAADIETLKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +E L K VS + + + S K +V TG+L + R +A++ Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +T LGA VS +S+KT ++I G+ GSKL KAQ+LG+K+++E + + LL Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLL 668 >gi|82701780|ref|YP_411346.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196] gi|123754406|sp|Q2YBB7|DNLJ_NITMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|82409845|gb|ABB73954.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196] Length = 707 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 261/729 (35%), Positives = 391/729 (53%), Gaps = 66/729 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + + + L I H+ YY+ P I D+++D L R + + P+L P+ Sbjct: 5 LSEISRHMRELRDAIELHNIRYYELDTPTIPDADFDKLFRELEELEQRHPELI---TPDS 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H P LSL + ++ F R+ Q + + +EPK Sbjct: 62 PTQRVGIPPLKAFPQVVHRTPMLSLSNAFTEGEVEAFDRRV---RQSLGIAQVEYAVEPK 118 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----SLNIPEIIEVR 188 DG I++ YE G V A RGDG+ GEDV+ ++ I +IP L S +P +EVR Sbjct: 119 FDGLAISLCYENGMLVSGATRGDGYIGEDVTLNLKTIRSIPLGLRAGDGSAEVPAFLEVR 178 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--K 245 GEV + K DF LN + K + NPRNAA+G LR+L+P R L FF +G+G + Sbjct: 179 GEVLMLKADFERLNRQQREKNEKTFINPRNAAAGSLRQLDPCITANRNLRFFAYGIGVCE 238 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + +L + L FPV R G++ Y++E+ +R L YDIDG VYK Sbjct: 239 GGNVPHDTHSHLLDYLSSLRFPVMRERRTVTGVAGLLEYHHEINGLREQLSYDIDGTVYK 298 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+E Q++LG +R+PR+ ++HKF ++A+T LL ID+Q+GRTG LTPVARL+PV +GG Sbjct: 299 VNELEYQEKLGFVSRAPRFALAHKFPAQEATTELLGIDVQVGRTGALTPVARLKPVFVGG 358 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 A +TNATLHNED I+ +D+ +GDRV V+RAG+VIP+VV + R +A Sbjct: 359 ATVTNATLHNEDEIR-----------RKDVMIGDRVTVRRAGDVIPEVVAVQKESRPSNA 407 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +PF P CP+C SR +R G+ + RCTGGL C AQ+ + + HF SR A NI G Sbjct: 408 KPFVMPEHCPVCGSRTIR----LPGETLT--RCTGGLFCPAQRKQAILHFASRRAMNIHG 461 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + +D D A IR PAD++ L + ++ G+ S N+ + I K Sbjct: 462 LGDKLVDHLV---DNAI-IRTPADLYKLGLAALAALDRM------GEKSAGNIINEIEKS 511 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +L RFI+SLGIR+VG AR LA+Y+ + D +L +V VG Sbjct: 512 KDTTLARFIYSLGIRNVGEATARDLARYFGGLDRLM----------DADVETLQQVSDVG 561 Query: 606 DIIAQAIVEFYQNPRNICAVEAL---------------LKEVSPSIGRHEKNVSSEIENK 650 ++AQ+I +F+ N VE L + S SS+I + Sbjct: 562 PVVAQSIADFFGERHNREVVEQLRAAGIRWKEGAGTQTTDHAAGSAHPGAAAASSKIAGR 621 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGTL + R +A+E + +G V+ +S+KTD ++ G + GSK +KA +LGV +++ Sbjct: 622 SFVLTGTLPTMSREEAREKIEAMGGKVAGSVSKKTDYVVAGADAGSKYDKALELGVALLD 681 Query: 711 EEQFLFLLQ 719 E + + LLQ Sbjct: 682 EAELIRLLQ 690 >gi|24113756|ref|NP_708266.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 301] gi|30063805|ref|NP_837976.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 2457T] gi|110806352|ref|YP_689872.1| NAD-dependent DNA ligase LigA [Shigella flexneri 5 str. 8401] gi|81723177|sp|Q83K81|DNLJ_SHIFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|122366427|sp|Q0T298|DNLJ_SHIF8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|24052834|gb|AAN43973.1| DNA ligase [Shigella flexneri 2a str. 301] gi|30042060|gb|AAP17786.1| DNA ligase [Shigella flexneri 2a str. 2457T] gi|110615900|gb|ABF04567.1| DNA ligase [Shigella flexneri 5 str. 8401] gi|281601828|gb|ADA74812.1| DNA ligase, NAD-dependent [Shigella flexneri 2002017] gi|313650866|gb|EFS15266.1| DNA ligase, NAD-dependent [Shigella flexneri 2a str. 2457T] gi|332755453|gb|EGJ85817.1| DNA ligase, NAD-dependent [Shigella flexneri K-671] gi|332756263|gb|EGJ86614.1| DNA ligase, NAD-dependent [Shigella flexneri 2747-71] gi|333002064|gb|EGK21630.1| DNA ligase, NAD-dependent [Shigella flexneri K-218] Length = 671 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 252/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKLAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|134296034|ref|YP_001119769.1| DNA ligase [Burkholderia vietnamiensis G4] gi|166215568|sp|A4JF81|DNLJ_BURVG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|134139191|gb|ABO54934.1| DNA ligase, NAD-dependent [Burkholderia vietnamiensis G4] Length = 691 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 255/708 (36%), Positives = 395/708 (55%), Gaps = 52/708 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ + YY +P + D+EYD L + P+L P+ P ++GG + Sbjct: 20 LRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLEADHPELVT---PDSPTQRVGGAVA 76 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------NSIFFTLEPKIDGT 137 V H P LSL ++ +D+ F R+ K D + + + E K DG Sbjct: 77 SGFTPVVHDAPMLSLNNGFSDDDIVAFDKRVADALDKPTDLAGSVTDPVEYACELKFDGL 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++RYE+G FV A+ RGDG +GEDV+ +R I +IP ++ ++P +++VRGEV + K Sbjct: 137 AISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGEVLMFKR 196 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKGQ 254 DF LN+ A ++ +ANPRNAA+G LR+L+P R L+FF +G+G + Sbjct: 197 DFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFSYGIGVLDGMPMPDTH 256 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L LG PVN G++ ++ ++ R +LPYDIDG+VYKV+ Q + Sbjct: 257 SALLDWYEALGLPVNRERAVVRGAQGLLEFFRKVGERRESLPYDIDGVVYKVNRRDEQDR 316 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLH Sbjct: 317 LGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 376 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED ++ +DIR+GD V+V+RAG+VIP+VV ++ R DA F P+ C Sbjct: 377 NEDEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLERRPVDAAEFVMPTEC 425 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S++ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 426 PVCGSKIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 479 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + +R PAD+F L + + F + S NL DS+ K ++ +L RFI Sbjct: 480 VELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFI 529 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIRHVG A+ LAK++ S ++ I+ + ++ L+ V VG I+A++I + Sbjct: 530 YGLGIRHVGESTAKDLAKHFGS-------LDPIMDASIEE---LLEVNDVGPIVAESIHQ 579 Query: 615 FYQNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N ++ L K P K + K +V TGTL + R A+E + Sbjct: 580 FFAEEHNRTVIDQLRAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAAKEMLE 639 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 640 AAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGLHQLLE 687 >gi|220931078|ref|YP_002507986.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168] gi|254781343|sp|B8D122|DNLJ_HALOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219992388|gb|ACL68991.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168] Length = 670 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 261/709 (36%), Positives = 393/709 (55%), Gaps = 53/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + +E+ L ++I YH+ YY P I D+E+D L +R + P L P+ P Sbjct: 4 KVEQEIRDLREKIRYHEYRYYVLDDPEISDAEFDELIQRLIDLEEKHPGLVT---PDSPT 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE KV H +P LSL +N DL F RIYR D I F +E KID Sbjct: 61 QRVGGEPLDKFDKVEHRVPMLSLGNAFNEGDLTNFARRIYRLL---DTGKIDFVVEHKID 117 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + Y+ G+ + A RG+G GEDV+A I+ IP++P L ++ IEVRGEVYI K Sbjct: 118 GLSAILTYQGGRLIRGATRGNGVVGEDVTANIKTIPSVPLRLKKDVD--IEVRGEVYIKK 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 +DF LN+ + G +P+ANPRNAA+G +R+L+P R L+F + + + Sbjct: 176 DDFSKLNERRLKKGEEPFANPRNAAAGSIRQLDPRLAAARPLSFIAYDVVAYEGEGLQTH 235 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 L+ +R LGF VN R+ + +V+ + R LP++IDG+V KV+E L++Q Sbjct: 236 VGALELLRELGFKVN-WYRKCDDITEVVNICKDWVDKREELPFEIDGMVIKVNELGLREQ 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF +Q +T + DI I +GRTG LTP A LEPV + G+ ++ ATLH Sbjct: 295 LGATAKSPRWAIAYKFPAQQKTTVVKDIIISVGRTGALTPTAVLEPVEVDGSTVSRATLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED I+ +D+R+GD VLV++AG+VIP+VV +I ++R Q F P C Sbjct: 355 NEDEIR-----------RKDVRIGDHVLVQKAGDVIPEVVKVIKSKRDGSEQIFHMPETC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C VVR+ A RC C AQ+ E + HFVSR+A NI+G+G +D Sbjct: 404 PACGGEVVREEGE------AVLRCVNVTGCPAQRREGILHFVSRNAMNIDGVGPALIDQL 457 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + I AD++ L++ ++ G+ S TN ++I ++ L R I Sbjct: 458 LEK----GLIEDYADLYYLKKEDLIPLERM------GEKSATNAIEAIRASKDRPLFRVI 507 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIRHVG +AR L + Y S + + L+ + +G IA++I+E Sbjct: 508 FALGIRHVGLGVARVLTEKYRSLSDLMRASGE----------ELVAIDEIGPTIARSIIE 557 Query: 615 FYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F++ P N + EA ++ G+ E+N+ + K VFTG L R +A++ V Sbjct: 558 FFKEPHNREVINKLKEAGVRLEEKENGKEEQNLY--LSGKTFVFTGKLDGFTRSEARDKV 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V++ +SRKTD ++VGD+PGSK +KA++LGV I++E++F +L+ Sbjct: 616 IAAGGKVTSSVSRKTDYVVVGDSPGSKYDKARELGVTILDEDKFKEVLK 664 >gi|320014458|gb|ADV98029.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 670 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 250/712 (35%), Positives = 410/712 (57%), Gaps = 51/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD + ++ + P+L ++ P Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ +++ E F R++ + K + F E K Sbjct: 60 --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP R+ N+P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G E+ Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + L + + G PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ Sbjct: 236 -PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 ALQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D + + Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEIT 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FPS CP+C S D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPSQCPVCSS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + + + PAD+F Q + K+ + G S NL ++ K + + Sbjct: 458 IIEQLVEKQ----YVENPADLF------QLTAGKLTGLDRMGPKSAQNLIAALEKAKQTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A Sbjct: 508 FARFLYALGIREVGEATAANLAAHFRTLDNL----------RAADIETLKSVPDVGEVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + ++ F N +E L K VS P E++ S K +V TG+L + R +A Sbjct: 558 KHVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEES-DSPFAGKTVVLTGSLTILSRDEA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ +T LGA VS +S+KT ++I G+ GSKL KAQ+LG+K+++E + + LL Sbjct: 617 KDRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLL 668 >gi|22125389|ref|NP_668812.1| NAD-dependent DNA ligase LigA [Yersinia pestis KIM 10] gi|45442391|ref|NP_993930.1| NAD-dependent DNA ligase LigA [Yersinia pestis biovar Microtus str. 91001] gi|108808172|ref|YP_652088.1| NAD-dependent DNA ligase LigA [Yersinia pestis Antiqua] gi|108811556|ref|YP_647323.1| NAD-dependent DNA ligase LigA [Yersinia pestis Nepal516] gi|145599373|ref|YP_001163449.1| NAD-dependent DNA ligase LigA [Yersinia pestis Pestoides F] gi|149365146|ref|ZP_01887181.1| DNA ligase [Yersinia pestis CA88-4125] gi|162420672|ref|YP_001607138.1| NAD-dependent DNA ligase LigA [Yersinia pestis Angola] gi|165926903|ref|ZP_02222735.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. F1991016] gi|165940356|ref|ZP_02228875.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. IP275] gi|166011271|ref|ZP_02232169.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. E1979001] gi|166212520|ref|ZP_02238555.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. B42003004] gi|167398917|ref|ZP_02304441.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421338|ref|ZP_02313091.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424444|ref|ZP_02316197.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470665|ref|ZP_02335369.1| DNA ligase, NAD-dependent [Yersinia pestis FV-1] gi|218930038|ref|YP_002347913.1| NAD-dependent DNA ligase LigA [Yersinia pestis CO92] gi|229838581|ref|ZP_04458740.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895648|ref|ZP_04510819.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A] gi|229899147|ref|ZP_04514290.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. India 195] gi|229901826|ref|ZP_04516947.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516] gi|270490015|ref|ZP_06207089.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27] gi|122980211|sp|Q1CJV7|DNLJ_YERPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123372308|sp|Q1C5X9|DNLJ_YERPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123776939|sp|Q7CJF3|DNLJ_YERPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216255|sp|A4TMG4|DNLJ_YERPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781914|sp|A9QZH0|DNLJ_YERPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21958274|gb|AAM85063.1|AE013752_4 DNA ligase [Yersinia pestis KIM 10] gi|45437255|gb|AAS62807.1| DNA ligase [Yersinia pestis biovar Microtus str. 91001] gi|108775204|gb|ABG17723.1| DNA ligase [Yersinia pestis Nepal516] gi|108780085|gb|ABG14143.1| DNA ligase [Yersinia pestis Antiqua] gi|115348649|emb|CAL21593.1| DNA ligase [Yersinia pestis CO92] gi|145211069|gb|ABP40476.1| DNA ligase [Yersinia pestis Pestoides F] gi|149291559|gb|EDM41633.1| DNA ligase [Yersinia pestis CA88-4125] gi|162353487|gb|ABX87435.1| DNA ligase, NAD-dependent [Yersinia pestis Angola] gi|165911711|gb|EDR30369.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. IP275] gi|165921254|gb|EDR38478.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. F1991016] gi|165989949|gb|EDR42250.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. E1979001] gi|166206451|gb|EDR50931.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. B42003004] gi|166960827|gb|EDR56848.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051421|gb|EDR62829.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056326|gb|EDR66095.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680722|gb|EEO76817.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516] gi|229687549|gb|EEO79622.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. India 195] gi|229694947|gb|EEO84994.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701454|gb|EEO89482.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A] gi|270338519|gb|EFA49296.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27] Length = 670 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 249/711 (35%), Positives = 408/711 (57%), Gaps = 49/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD + ++ + P+L ++ P Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ +++ E F R++ + K + F E K Sbjct: 60 --QRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP R+ N+P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ + Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D + +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S D+ G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSQCPVCGS----DIERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F Q + K+ + G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLF------QLTAGKLTGLDRMGPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNL----------RAADIETLKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 ++ F N +E L K VS P E++ S K +V TG+L + R +A+ Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEES-DSPFAGKTVVLTGSLTILSRDEAK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T LGA VS +S+KT ++I G+ GSKL KAQ+LG+K+++E + + LL Sbjct: 618 DRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLL 668 >gi|148360390|ref|YP_001251597.1| DNA ligase [Legionella pneumophila str. Corby] gi|166215817|sp|A5IFV1|DNLJ_LEGPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148282163|gb|ABQ56251.1| DNA ligase [Legionella pneumophila str. Corby] Length = 673 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 255/707 (36%), Positives = 389/707 (55%), Gaps = 54/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + +L+++I +D YY +P++ D+EYD + +P P+ P + Sbjct: 7 KESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SPDSPTQR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEPKID 135 + G + + V H LSL ++ ++L+ FI R +K D+ + F EPK+D Sbjct: 64 VSGTPSDAFMPVAHKQAMLSLSNVFTTDELKAFIKRAI---EKLDEPNQQLVFACEPKLD 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G +AA RGDG GE+++A I+ I ++P R+ N P++IEVRGEVYI Sbjct: 121 GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252 K DF A N +G K +ANPRNAA+G LR+LNP +R L + +G+G + Sbjct: 181 KADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E L ++ GF V+ R+A G + YY M + R+ LP++IDG+VYK+D SLQ Sbjct: 241 SHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG +R+PR+ +HKF + TRL+ +D Q+GRTG +TPVARLEPV++GG ++NAT Sbjct: 301 QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I +DI +GD V+++RAG+VIP+VV +I+ +R +A+ P Sbjct: 361 LHNFDEIT-----------RKDIHIGDTVIIRRAGDVIPEVVSVILEKRPANARKIELPK 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S VVR+ + A RC GGL C AQ + HF SR A IEGLG +D Sbjct: 410 NCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLID 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 D + AD++ L + + N+ G+ S NL ++ K + + R Sbjct: 464 QLV---DEGIVHHL-ADLYELDLQ------TLANLPRMGEKSAKNLLSALEKSKKTTFNR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 F+++LGIR +G AR LA++Y ++ A I ++ N+ +G + A Sbjct: 514 FLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLND-----------IGPVAASH 562 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQE 668 IV F+ N+ ++ LL E+ + EK N + K +V TGTL + R +A+ Sbjct: 563 IVHFFAQAHNLEVIDRLL-ELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKA 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + LGA VS +S KTD ++ G GSKL KA +LGV I+ E++FL Sbjct: 622 KLLALGAKVSGSVSSKTDYLVAGSEAGSKLVKATELGVAIIEEDEFL 668 >gi|16765747|ref|NP_461362.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167991721|ref|ZP_02572820.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262860|ref|ZP_03162934.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|81522316|sp|Q8ZN89|DNLJ_SALTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|16420966|gb|AAL21321.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241115|gb|EDY23735.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329843|gb|EDZ16607.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247627|emb|CBG25454.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994529|gb|ACY89414.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158979|emb|CBW18492.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913414|dbj|BAJ37388.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222873|gb|EFX47944.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130756|gb|ADX18186.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989355|gb|AEF08338.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 671 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 250/716 (34%), Positives = 405/716 (56%), Gaps = 58/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G I Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG----ILE 231 Query: 252 KGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 G+ L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV Sbjct: 232 GGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+ LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 292 NSLALQELLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 352 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 401 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 455 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKSK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 505 TTTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 554 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 ++A + F+ N + LL E +P + + + + S K +V TG+L ++ Sbjct: 555 VVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEIDSPFAGKTVVLTGSLSQMS 613 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 614 RDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|319776649|ref|YP_004139137.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047] gi|329124164|ref|ZP_08252711.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116] gi|317451240|emb|CBY87473.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047] gi|327467589|gb|EGF13087.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116] Length = 670 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/715 (36%), Positives = 413/715 (57%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 5 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 62 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGTITPVAKLEPVFVAGVT 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ + Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFIF+LGIR VG A +LA ++ + A + + L +VP VG+ Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665 >gi|33602779|ref|NP_890339.1| DNA ligase [Bordetella bronchiseptica RB50] gi|81429836|sp|Q7WCJ7|DNLJ_BORBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33577221|emb|CAE35778.1| DNA ligase [Bordetella bronchiseptica RB50] Length = 696 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 264/729 (36%), Positives = 398/729 (54%), Gaps = 71/729 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ ++ L EI H+ YY + P + D+EYDAL R A+ P+L P+ P + Sbjct: 9 QQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPDSPTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEPK 133 +G V H++P LSL ++ ED+R F R+ + D + + E K Sbjct: 66 VGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I++RYE+G+ AA RGDG +GEDV+A IR I +P L P ++EVRGEV + Sbjct: 126 LDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLH-GAPRVLEVRGEVLM 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF------VHGLGK- 245 ++ +F LN A G K + NPRNAA+G LR+L+P R L FF VHGL + Sbjct: 185 NRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEG 244 Query: 246 --------------TSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKS 290 S + ML + LG PVN + G++++Y + Sbjct: 245 MPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGK 304 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 +R+ LPYDIDG+VYKVD Q+ LG AR+PR+ ++HKF ++A T+LL I++Q+GRTG Sbjct: 305 LRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTG 364 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVARL PV +GG +TNATLHNED I+ +D+R+GD V+V+RAG+VI Sbjct: 365 AITPVARLAPVFVGGVTVTNATLHNEDEIR-----------RKDVRIGDTVIVRRAGDVI 413 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+VV ++ +R DA+ F + CPIC S + R G+ +A RCTGGL C+AQ+ + Sbjct: 414 PEVVGPVLEKRPADAREFVMLTACPICGSAIER----PEGEAIA--RCTGGLFCAAQRKQ 467 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 L H R A +IEGLG++ +D ++ ++ ADI++L + ++ + Sbjct: 468 TLLHAAGRKALDIEGLGEKLIDQLVDAD----RVKSLADIYSL------TAFELAALERM 517 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 G S NL +I++ R +L R +F+LGIRHVG AR +A+++ S + Sbjct: 518 GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASEE---- 573 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIEN 649 +L+ VP VG ++A +I F+ P N VE L ++ V P + S + Sbjct: 574 ------ALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS--LAG 625 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K V TGT+ R +A + G VS +S+KT ++ G++ GSKL KAQ+LGV ++ Sbjct: 626 KTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVL 685 Query: 710 NEEQFLFLL 718 +E+ LL Sbjct: 686 DEDGLKALL 694 >gi|30995424|ref|NP_439257.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae Rd KW20] gi|145638086|ref|ZP_01793696.1| DNA ligase [Haemophilus influenzae PittII] gi|166214918|sp|P43813|DNLJ_HAEIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145272415|gb|EDK12322.1| DNA ligase [Haemophilus influenzae PittII] gi|309751252|gb|ADO81236.1| NAD-dependent DNA ligase [Haemophilus influenzae R2866] Length = 670 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/715 (36%), Positives = 413/715 (57%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 5 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 62 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ + Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFIF+LGIR VG A +LA ++ + A + + L +VP VG+ Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665 >gi|209364099|ref|YP_001424866.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111] gi|207082032|gb|ABS76887.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111] Length = 673 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 261/711 (36%), Positives = 413/711 (58%), Gaps = 58/711 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L QEI+ H+ YY S+P I DS YD L + +P+ + P+ P + Sbjct: 11 QKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSSPTQR 67 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G E L +F+ V H IP LSL+ +++ + LR F RI + + K D + EPK+DG Sbjct: 68 VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 124 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV + + Sbjct: 125 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 184 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252 F N E G K +ANPRNAASG LR+L+P R L F+ + GL K + F K Sbjct: 185 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 243 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ +Q Sbjct: 244 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 303 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R+PRW I++KF ++ T + I+ Q+GRTG++TPVARLEPV++ G ++NAT Sbjct: 304 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGVVTPVARLEPVSVSGVTVSNAT 363 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D ++ R +D+RVGD V+V+RAG+VIP+VV I+ +R A+ PS Sbjct: 364 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 412 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + V++ G+ VA RC GGL C AQ E +KHF SR A +IEGLG + ++ Sbjct: 413 RCPVCHAEVIKP----EGEAVA--RCVGGLYCRAQLRESIKHFASRRALDIEGLGDKLVE 466 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F + ++ DI + + ++++ T + + G+ S NL +I K + +L R Sbjct: 467 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 516 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG IAR+LA+++ E++ ++ + + +L + +G ++A+ I Sbjct: 517 FLYALGIRGVGDTIARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVVAENI 566 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668 F+ N + L+ +G H EK V SEI K V TG L+ + R +A+E Sbjct: 567 HAFFHQKHNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 622 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672 >gi|163802586|ref|ZP_02196478.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4] gi|159173669|gb|EDP58488.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4] Length = 670 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 255/710 (35%), Positives = 395/710 (55%), Gaps = 47/710 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E ++L L++ + YH YY P I D+EYD + R I PDL + P+ Sbjct: 3 ESVLQQLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPDLVTVDSPS-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG+ +VTH +P LSL+ ++ +L F R + N + EPK+ Sbjct: 61 -QRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQD--RVVAHNIKQYCCEPKL 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG +++ YE G V AA RGDG +GE+++ +R I IP ++ N P +EVRGEV++ Sbjct: 118 DGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGENWPTRLEVRGEVFM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFA 251 K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G + A Sbjct: 178 PKAGFDKLNELARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGAVLA 237 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 YE +++ G P+ R + + +YY ++ R L Y+IDG+V KVD+ + Sbjct: 238 NSHYERFLQIKSWGLPMCPETRCVDNLEEVKAYYRDILVRREALAYEIDGVVIKVDDIVI 297 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEP+ +GG ++NA Sbjct: 298 QERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPIFVGGVTVSNA 357 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L + VGD+V+++RAG+VIP+VV +I R A+ FP Sbjct: 358 TLHNADEIERL-----------QVMVGDQVVIRRAGDVIPQVVSVIKERRPETAREIIFP 406 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++GLG + + Sbjct: 407 NACPVCGSHVER----IEGE--AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGLGDKVI 460 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + E + PAD+F L T ++ G S TN+ +++ K + +L Sbjct: 461 EQLVDRE----MVETPADLFKLSAGVLTVLDRM------GPKSATNVVNALEKSKLTTLP 510 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF++SLGIR VG A +LA+Y+ N+ A L+ V +G ++A+ Sbjct: 511 RFLYSLGIREVGEATAANLAQYF----------KNLDAIQQATEEQLVDVQDIGVVVAKH 560 Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F+ +N V+ LL + P I ++ +E K +V TGTL ++ R +A+E Sbjct: 561 ITTFFSEEKNQAVVQDLLAQGINWPDIASPQEGAERPLEGKTVVLTGTLSQLGRSEAKEA 620 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L++ Sbjct: 621 LQNLGAKVTGSVSKKTDILFAGENAGSKLTKAQELGIEIQTEQDLLNLMK 670 >gi|82544871|ref|YP_408818.1| NAD-dependent DNA ligase LigA [Shigella boydii Sb227] gi|123741957|sp|Q31Y68|DNLJ_SHIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81246282|gb|ABB66990.1| DNA ligase [Shigella boydii Sb227] Length = 671 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 252/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKLAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|296046593|gb|ADG86438.1| NAD-dependent DNA ligase [synthetic construct] Length = 689 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 253/715 (35%), Positives = 404/715 (56%), Gaps = 71/715 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY +P + D+EYD L + P+L + P+ K+GG+ S +VTH +P Sbjct: 22 YYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTIDSPS---QKVGGQALKSFTQVTHQLP 78 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ +++++D F+ R+ + D+ +I F EPK+DG +++RYE G+ + AA R Sbjct: 79 MLSLDNVFSLDDFHAFVKRVKD--RLNDNQAIVFCAEPKLDGLAVSLRYEHGQLIQAATR 136 Query: 155 GDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 GDG GE+++ IR I +IP L + P+I+EVRGEV++ K F ALN G Sbjct: 137 GDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTLAKKRGE 196 Query: 211 KPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--------------KTSEIFAKGQ 254 K +ANPRNAA+G LR+L+ + IT R L F+ + LG T++ FA Sbjct: 197 KGFANPRNAAAGSLRQLD-SKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANSH 255 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E L +++ LG P+ VR + ++Y ++ + RS L Y+IDG V KVDE SLQK+ Sbjct: 256 HERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQKR 315 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW I++KF ++ T + D++ Q+GRTG +TPVARL+PV +GG ++NATLH Sbjct: 316 LGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATLH 375 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D I L ++V D V+++RAG+VIP++V +++++R +A FP+ C Sbjct: 376 NQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTSC 424 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V + A RCT GL C+AQ+ E +KHF SR A +++GLG + ++ Sbjct: 425 PVCDSAVAKPEGE------AVLRCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQL 478 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + I PAD+F L Q ++ ++ G S TNL + + + ++ +L +FI Sbjct: 479 VDEK----LINTPADLFKLTEIQVSTIDRM------GKKSATNLINGLEQAKSTTLAKFI 528 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIR VG A +LA ++ + + A + L V VG+++A+ I+ Sbjct: 529 YGLGIREVGEATAANLANHFYT----------LAAIESASLEDLQNVSDVGEVVAKNIIN 578 Query: 615 FYQNPRNICAVEALLKEVS-PSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F++ N+ V L + + P+I E ++ +I V TGTL ++ R +A+ + Sbjct: 579 FFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQI----FVLTGTLTQMGRTEAKTAL 634 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 LGA VS +S+ T ++ GD GSKL KAQ LG+ ++ E+ + LL ++ T+ Sbjct: 635 QSLGAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689 >gi|145298235|ref|YP_001141076.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida A449] gi|166215387|sp|A4SKA6|DNLJ_AERS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|142851007|gb|ABO89328.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida A449] Length = 664 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 256/691 (37%), Positives = 400/691 (57%), Gaps = 55/691 (7%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R AI P+L S P+ ++GG+ + +V H IP Sbjct: 22 YYVLDNPTVPDAEYDRLMRELIAIESEHPELKTSASPS---VRVGGQPLTAFRQVRHEIP 78 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ +++ E+L+ F R+ + K + S F EPK+DG +++ Y G+ V AA R Sbjct: 79 MLSLDNVFSSEELQAFEQRMKD--RLKREISFTFCCEPKLDGLAVSLLYVDGQLVQAATR 136 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211 GDG +GE+++ +R I IP LSL + P +EVRGEV++ K F A+N + +A G K Sbjct: 137 GDGATGEEITENVRTIKAIP--LSLRGSDWPARLEVRGEVFMPKAGFEAMNAKALAAGEK 194 Query: 212 PYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270 + NPRNAA+G LR+L+ +R LNF+ +G+G + + L +++ G P++ Sbjct: 195 VFVNPRNAAAGSLRQLDSRITASRPLNFYAYGVGVGGDQLGDSHFGRLCQLKAWGLPMSP 254 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 V+ G ++++++ + R L Y+IDG+VYKVD LQ++LG AR+PRW +HKF Sbjct: 255 EVKLKEGAAGCQAFHDDILARRGELAYEIDGVVYKVDAIPLQEELGFVARAPRWATAHKF 314 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 ++ T L +++ Q+GRTG +TPVA+L+PV +GG I+NATLHN D I+ L Sbjct: 315 PAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTISNATLHNADEIERL-------- 366 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 + +GD V+V+RAG+VIP++V ++ +R DA+ FP+ CP+C S + R G Sbjct: 367 ---GVMIGDTVIVRRAGDVIPQIVAVVEAQRPVDAREILFPTQCPVCGSALER----LEG 419 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 ++V RC+GGL C AQ+ E +KHF +R A +++GLG + ++ D ++ PAD+ Sbjct: 420 EVVT--RCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLV---DKGL-VKTPADL 473 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 F+L Q ++ G S NL +I+ R+ +L RF+F+LGIR VG A +L Sbjct: 474 FSLNAIQLAGLERM------GQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNL 527 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 A ++L+ ++ + A + + L+ V VGDI+A+ + F + P NI + A + Sbjct: 528 ANHFLT-------LDALRAASVE---QLLEVADVGDIVAKHVYYFLRQPHNIEVLAAGIH 577 Query: 631 EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 P+I EK +SE K V TGTL + R+ A+ + LGA V+ +S KTD++ Sbjct: 578 --WPAI---EKKEASEQPFAGKTFVLTGTLNLLSRNDAKAALQALGAKVAGSVSAKTDVL 632 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G+ GSKL KAQ+LG+ I EEQ LQ Sbjct: 633 VAGEAAGSKLAKAQELGITIWTEEQLQAALQ 663 >gi|148828262|ref|YP_001293015.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG] gi|166215779|sp|A5UIM6|DNLJ_HAEIG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148719504|gb|ABR00632.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG] Length = 670 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/715 (36%), Positives = 413/715 (57%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 5 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 62 VGAKPLSGFSQIRHEIPMLSLDNAFSDTEFNAFVKRI-------EDRLILLPKPLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G AA RGDG +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 115 PKLDGLAVSILYVNGVLTQAATRGDGSTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 234 VDLPTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ + Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFIF+LGIR VG A +LA ++ + A + + L +VP VG+ Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665 >gi|33594429|ref|NP_882073.1| DNA ligase [Bordetella pertussis Tohama I] gi|81424006|sp|Q7VRX7|DNLJ_BORPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33564504|emb|CAE43819.1| DNA ligase [Bordetella pertussis Tohama I] gi|332383840|gb|AEE68687.1| DNA ligase [Bordetella pertussis CS] Length = 696 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 263/729 (36%), Positives = 398/729 (54%), Gaps = 71/729 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ ++ L EI H+ YY + P + D+EYDAL R A+ P+L P+ P + Sbjct: 9 QQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPDSPTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEPK 133 +G V H++P LSL ++ ED+R F R+ + D + + E K Sbjct: 66 VGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I++RYE+G+ AA RGDG +GEDV+A IR I +P L P ++EVRGEV + Sbjct: 126 LDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLH-GAPRVLEVRGEVLM 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF------VHGLGK- 245 ++ +F LN A G K + NPRNAA+G LR+L+P R L FF VHGL + Sbjct: 185 NRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEG 244 Query: 246 --------------TSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKS 290 S + ML + LG PVN + G++++Y + Sbjct: 245 MPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGK 304 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 +R+ LPYDIDG+VYKVD Q+ LG AR+PR+ ++HKF ++A T+LL I++Q+GRTG Sbjct: 305 LRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTG 364 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVARL PV +GG +TNATLHNED I+ +D+R+GD V+V+RAG+VI Sbjct: 365 AITPVARLAPVFVGGVTVTNATLHNEDEIR-----------RKDVRIGDTVIVRRAGDVI 413 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+VV ++ +R DA+ F + CPIC S + R P++ + RCTGGL C+AQ+ + Sbjct: 414 PEVVGPVLEKRPADAREFVMLTACPICGSAIER---PESEAIA---RCTGGLFCAAQRKQ 467 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 L H R A +IEGLG++ +D ++ ++ ADI++L + ++ + Sbjct: 468 TLLHAAGRKALDIEGLGEKLIDQLVDAD----RVKSLADIYSL------TAFELAALERM 517 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 G S NL +I++ R +L R +F+LGIRHVG AR +A+++ S + Sbjct: 518 GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASEE---- 573 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIEN 649 +L+ VP VG ++A +I F+ P N VE L ++ V P + S + Sbjct: 574 ------ALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS--LAG 625 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K V TGT+ R +A + G VS +S+KT ++ G++ GSKL KAQ+LGV ++ Sbjct: 626 KTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVL 685 Query: 710 NEEQFLFLL 718 +E+ LL Sbjct: 686 DEDGLKALL 694 >gi|71281008|ref|YP_270140.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H] gi|123774873|sp|Q47YI0|DNLJ_COLP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71146748|gb|AAZ27221.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H] Length = 689 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 253/715 (35%), Positives = 407/715 (56%), Gaps = 71/715 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY +P + D+EYD L + P+L + P+ K+GG+ S +VTH +P Sbjct: 22 YYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTIDSPS---QKVGGQALKSFTQVTHQLP 78 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ +++++D F+ R+ + D+ +I F EPK+DG +++RYE G+ + AA R Sbjct: 79 MLSLDNVFSLDDFHAFVKRVKD--RLNDNQAIVFCAEPKLDGLAVSLRYEHGQLIQAATR 136 Query: 155 GDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 GDG GE+++ IR I +IP L + P+I+EVRGEV++ K F ALN G Sbjct: 137 GDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTLAKKRGE 196 Query: 211 KPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--------------KTSEIFAKGQ 254 K +ANPRNAA+G LR+L+ + IT R L F+ + LG T++ FA Sbjct: 197 KGFANPRNAAAGSLRQLD-SKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANSH 255 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E L +++ LG P+ VR + ++Y ++ + RS L Y+IDG V KVDE SLQK+ Sbjct: 256 HERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQKR 315 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW I++KF ++ T + D++ Q+GRTG +TPVARL+PV +GG ++NATLH Sbjct: 316 LGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATLH 375 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D I L ++V D V+++RAG+VIP++V +++++R +A FP+ C Sbjct: 376 NQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTSC 424 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V + P+ ++ RCT GL C+AQ+ E +KHF SR A +++GLG + ++ Sbjct: 425 PVCDSAVAK---PEGEAVL---RCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQL 478 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + I PAD+F L Q ++ ++ G S TNL + + + ++ +L +FI Sbjct: 479 VDEK----LINTPADLFKLTEIQVSTIDRM------GKKSATNLINGLEQAKSTTLAKFI 528 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIR VG A +LA ++ + + A + L V VG+++A+ I+ Sbjct: 529 YGLGIREVGEATAANLANHFYT----------LAAIESASLEDLQNVSDVGEVVAKNIIN 578 Query: 615 FYQNPRNICAVEALLKEVS-PSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F++ N+ V L + + P+I E ++ +I V TGTL ++ R +A+ + Sbjct: 579 FFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQI----FVLTGTLTQMGRTEAKTAL 634 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 LGA VS +S+ T ++ GD GSKL KAQ LG+ ++ E+ + LL ++ T+ Sbjct: 635 QSLGAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689 >gi|7673996|sp|O87703|DNLJ_BACST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|3688229|emb|CAA09732.1| DNA ligase [Geobacillus stearothermophilus] Length = 670 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 258/708 (36%), Positives = 396/708 (55%), Gaps = 56/708 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +QA + + L + ++ + YY +P + D+EYD L + AI +P+L S+ P Sbjct: 4 QQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPT-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +IGG + KV H +P +SL + DLR F R+ +++ + E KI Sbjct: 62 -QRIGGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRV-----RQEVGEAAYVCELKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I ++P L L P +E RGE ++ Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLP--LRLKEPVSLEARGEAFMP 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ FV+GL + Sbjct: 174 KASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGIAS 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L ++ LGF VN R+ ++++ +E R LPY+IDG+V KVD F+ Q+ Sbjct: 234 HSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQR 293 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG A+SPRW I++KF ++ T L+ I++ +GRTG++TP A LEPV + G + ATL Sbjct: 294 ALGATAKSPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATL 353 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED+I+ +DIR+GD V++K+AG++IP+VV ++V+ R D PF+ P+ Sbjct: 354 HNEDFIR-----------EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAMPTH 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C+S +VR G++ A RC C AQ ERL HF SR A NIEGLG++ + Sbjct: 403 CPECESELVR----LEGEV--ALRCLNP-NCPAQLRERLIHFASRAAMNIEGLGEKVVTQ 455 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F A +R AD++ L + Q ++ G+ S NL +I + SLER Sbjct: 456 LFN----AGLVRDVADLYCLTKEQLVGLERM------GEKSAANLLAAIEASKQNSLERL 505 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR+VGA+ A+ LA+++ + + + L+ VP +G+ +A AI Sbjct: 506 LFGLGIRYVGAKAAQLLAEHFETMERLERATKE----------ELMAVPEIGEKMADAIT 555 Query: 614 EFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ P ++ L + P E S K +V TG L + R++A+ Sbjct: 556 AFFAQPEATELLQELRAYGVNMAYKGPKRS-AEAPADSAFAGKTVVLTGKLASMSRNEAK 614 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 E + +LG V+ +SR TD++I G++ GSKLEKAQQLG++I +E +FL Sbjct: 615 EQIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEIWDESRFL 662 >gi|301169841|emb|CBW29445.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae 10810] Length = 670 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 261/715 (36%), Positives = 412/715 (57%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 5 QTQLDNLRKTLRQYEYEYHVLDHPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 62 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVNRI-------EDRLILLPKPLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ + Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFIF+LGIR VG A +LA ++ + + + L +VP VG+ Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLDTL----------KDANLEELQQVPDVGE 555 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665 >gi|296106543|ref|YP_003618243.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy] gi|295648444|gb|ADG24291.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy] Length = 673 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 255/707 (36%), Positives = 389/707 (55%), Gaps = 54/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + +L+++I +D YY +P++ D+EYD + +P P+ P + Sbjct: 7 KESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SPDSPTQR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFTLEPKID 135 + G + + V H LSL ++ ++L+ FI R +K D+ + F EPK+D Sbjct: 64 VSGTPSDAFMPVAHKQAMLSLSNVFTTDELKAFIKRAI---EKLDEPNQQLVFACEPKLD 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G +AA RGDG GE+++A I+ I ++P R+ N P++IEVRGEVYI Sbjct: 121 GLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIP 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252 K DF A N +G K +ANPRNAA+G LR+LNP +R L + +G+G + Sbjct: 181 KADFEAYNARARELGEKIFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPN 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E L ++ GF V+ R+A G + YY M + R+ LP++IDG+VYK+D SLQ Sbjct: 241 SHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG +R+PR+ +HKF + TRL+ +D Q+GRTG +TPVARLEPV++GG ++NAT Sbjct: 301 QQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I +DI +GD V+++RAG+VIP+VV +I+ +R +A+ P Sbjct: 361 LHNFDEIT-----------RKDIHIGDTVIIRRAGDVIPEVVSVILEKRPANARKIELPK 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S VVR+ + A RC GGL C AQ + HF SR A IEGLG +D Sbjct: 410 NCPVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLID 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 D + AD++ L + + N+ G+ S NL ++ K + + R Sbjct: 464 QLV---DEGIVHHL-ADLYELDLQ------TLANLPRMGEKSAKNLLSALEKSKKTTFNR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 F+++LGIR +G AR LA++Y ++ A I ++ N+ +G + A Sbjct: 514 FLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLND-----------IGPVAASH 562 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQE 668 IV F+ N+ ++ LL E+ + EK N + K +V TGTL + R +A+ Sbjct: 563 IVHFFAQAHNLEVIDRLL-ELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKA 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + LGA VS +S KTD ++ G GSKL KA +LGV I+ E++FL Sbjct: 622 KLLALGAKVSGSVSSKTDYLVAGSEAGSKLVKATELGVAIIEEDEFL 668 >gi|190359248|sp|A9KCS0|DNLJ_COXBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 670 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 261/711 (36%), Positives = 413/711 (58%), Gaps = 58/711 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L QEI+ H+ YY S+P I DS YD L + +P+ + P+ P + Sbjct: 8 QKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSSPTQR 64 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G E L +F+ V H IP LSL+ +++ + LR F RI + + K D + EPK+DG Sbjct: 65 VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 121 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV + + Sbjct: 122 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 181 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252 F N E G K +ANPRNAASG LR+L+P R L F+ + GL K + F K Sbjct: 182 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ +Q Sbjct: 241 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R+PRW I++KF ++ T + I+ Q+GRTG++TPVARLEPV++ G ++NAT Sbjct: 301 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGVVTPVARLEPVSVSGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D ++ R +D+RVGD V+V+RAG+VIP+VV I+ +R A+ PS Sbjct: 361 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + V++ G+ VA RC GGL C AQ E +KHF SR A +IEGLG + ++ Sbjct: 410 RCPVCHAEVIKP----EGEAVA--RCVGGLYCRAQLRESIKHFASRRALDIEGLGDKLVE 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F + ++ DI + + ++++ T + + G+ S NL +I K + +L R Sbjct: 464 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG IAR+LA+++ E++ ++ + + +L + +G ++A+ I Sbjct: 514 FLYALGIRGVGDTIARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVVAENI 563 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668 F+ N + L+ +G H EK V SEI K V TG L+ + R +A+E Sbjct: 564 HAFFHQKHNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 619 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669 >gi|260580185|ref|ZP_05848015.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW] gi|1574651|gb|AAC22753.1| DNA ligase (lig) [Haemophilus influenzae Rd KW20] gi|260093469|gb|EEW77402.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW] Length = 679 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/715 (36%), Positives = 413/715 (57%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 14 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 70 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 71 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 123 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 124 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 183 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 184 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 242 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 243 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 303 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 363 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 410 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 411 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 464 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ + Sbjct: 465 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 514 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFIF+LGIR VG A +LA ++ + A + + L +VP VG+ Sbjct: 515 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 564 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 565 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 619 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 620 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 674 >gi|326317205|ref|YP_004234877.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374041|gb|ADX46310.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC 19860] Length = 732 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 271/754 (35%), Positives = 399/754 (52%), Gaps = 89/754 (11%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+ + +++L ++ YY P + D+EYD + + A+ A P+L P+ P Sbjct: 17 EELGRRVAALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQALQALEAAHPELV---TPDSP 73 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQKKDDNS-IFFTLE 131 ++ G + L V H++P LS+ + E F R+ R + D S + + E Sbjct: 74 TQRVIGAVMEGLTPVRHTVPMLSIRTETDTEASGAETFDARVRRELKLAPDASPVEYVAE 133 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEV 187 PK DG +++RYE G+ V AA RGDG GEDV+ IR I IP L +P ++EV Sbjct: 134 PKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLPTGGDKGVPPVLEV 193 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGEVY+ + DF LN+ G K + NPRNAA+G +R+L+ R L+FF +GLG Sbjct: 194 RGEVYMRRADFDRLNERQREAGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLGDI 253 Query: 247 SEIFAKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + G ++MLQ+++ GFPV VR A +V+++ E+ R LPYDIDG Sbjct: 254 TPAAEGGPDFATHFDMLQQLKAWGFPVAAQVRTALGAAELVAFHREVGESRDQLPYDIDG 313 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKV+ +LQ+QLG R PRW ++HK+ ++ TR+ ID+Q+GRTG LTPVARL PV Sbjct: 314 VVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPV 373 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV------- 414 +GG +TNATLHN I+ + +RVGD+V+V+RAG+VIP+VV Sbjct: 374 FVGGVTVTNATLHNLFEIR-----------KKGVRVGDQVIVRRAGDVIPEVVGTVPAAL 422 Query: 415 ----------DIIVNE------------------RHPDAQPFSFPSFCPICQSRVVRDLN 446 D +V+ R P F P CPIC S VVR+ Sbjct: 423 LPVAGALQGSDALVDAASGADGTAPGADAARAAPRSPYVPNFRMPRQCPICGSAVVRE-- 480 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 K A HRCTGGL C AQ+ E L HF R A +IEGLG++ +D + + IR Sbjct: 481 ----KGEANHRCTGGLFCPAQRKEALLHFAQRRAMDIEGLGEKLVDQLVEGQ----VIRT 532 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 D++ L T + ++ + S N+ ++ K ++ +L RF+F LGIRHVG Sbjct: 533 LPDLYRL------GLTALSSLDRMAEKSAQNVLAALEKSKHTTLPRFLFGLGIRHVGEAT 586 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 A+ LA+++ ++ II + + L+ V VG I+A+AI F+ P N VE Sbjct: 587 AKDLARHFGG-------LDAIIGASVE---QLLEVNDVGPIVAEAIHTFFAQPHNREVVE 636 Query: 627 ALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L V+ G + + + K V TGTL + R A+E + GA V+ +S+KT Sbjct: 637 QLRACGVTWKEGPPAERATLPLAGKTFVLTGTLPTLSREDAKERLEAAGAKVAGSVSKKT 696 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ G+ GSKL KAQ+LGV +++E L LLQ Sbjct: 697 HYVVAGEEAGSKLTKAQELGVPVLDEAGMLALLQ 730 >gi|300897228|ref|ZP_07115672.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1] gi|300358986|gb|EFJ74856.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1] Length = 671 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 251/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q++LG AR+PRW ++ KF ++ T + D++ ++GRTG +TPVARLEPV++ G L++ Sbjct: 295 AQQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFKVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|261253653|ref|ZP_05946226.1| DNA ligase [Vibrio orientalis CIP 102891] gi|260937044|gb|EEX93033.1| DNA ligase [Vibrio orientalis CIP 102891] Length = 669 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 252/708 (35%), Positives = 405/708 (57%), Gaps = 51/708 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +++L+ L + + YH YY P I D+EYD L R + P+L + P+ + Sbjct: 6 QEKLNQLRETLHYHGVKYYVEDNPEIPDAEYDRLMRDLMELESQHPELMSIDSPS---QR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF--FTLEPKID 135 +GG V H IP LSL+ ++ +L F R+ + + ++ F F EPK+D Sbjct: 63 VGGAPLDGFGSVKHEIPMLSLDNAFDDGELESFHKRM----KDRIPSATFDVFCCEPKLD 118 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G +++ YE G V AA RGDG +GE+++ +R I IP ++ P IEVRGEV++ Sbjct: 119 GLAVSLLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPARIEVRGEVFMP 178 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252 K F LN+ + G K + NPRNAA+G LR+L+ TR L+F+ + +G + Sbjct: 179 KAGFDKLNELALKKGDKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGAELSS 238 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Y+ +++ G P+ +Q ++ + +YY ++ R +L Y+IDG+V KVD +LQ Sbjct: 239 SHYQRFLQLKGWGLPMCPETKQVSSLDDVKAYYQDILERRESLTYEIDGVVIKVDNIALQ 298 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NAT Sbjct: 299 EQLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNAT 358 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L + VGD V+++RAG+VIP++V ++ R +A+ FP Sbjct: 359 LHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVSERRPENAREIVFPE 407 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C+S+V R G+ VA RC+GGL C AQ+ E LKHFVSR A +++GLG++ ++ Sbjct: 408 NCPVCKSQVER----VEGEAVA--RCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIE 461 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 E + PAD+F L S I + G S N+ D++NK + +L R Sbjct: 462 QLVDRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVDALNKSKETTLPR 511 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F++SLGIR VG A +LA+++ + ++ + N++ +L+ V +G+I+A I Sbjct: 512 FLYSLGIREVGEATAANLAQHF-------KTLDAVKIANHE---ALVEVQDIGEIVASHI 561 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYV 670 + F+ +N+ ++ L+ + EK+ S+ + K +V TG+L ++ R A+ + Sbjct: 562 IAFFAQDKNLTVIDDLILQGVHWSDVEEKDESTPQPLAGKTVVLTGSLSQLTRSDAKAAL 621 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I EE + L+ Sbjct: 622 QNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIRTEEDLISLM 669 >gi|146329194|ref|YP_001209306.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A] gi|166215582|sp|A5EVZ5|DNLJ_DICNV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146232664|gb|ABQ13642.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A] Length = 678 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 257/712 (36%), Positives = 396/712 (55%), Gaps = 50/712 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI--AHAFPDLARSEDPNGPLNK 77 EL +L Q I H+ YY P I DSE+DAL ++ A+ A P A S P + Sbjct: 11 ELEALRQTIRAHEYAYYVLEAPNIADSEFDALMQKLRALEAASGLPIPADS-----PTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG+ + V H I LSL+ ++N ++ F R+ Q +I EPK DG Sbjct: 66 VGGKADNRFRNVAHHIAMLSLDNVFNADEFADFYRRLQE--QLSPTTAISLIAEPKFDGL 123 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I +RYE G A+ RGDG +GEDV+ +R I TIP R+ + P++IE+RGE+Y+ K Sbjct: 124 AINLRYENGILQRASTRGDGITGEDVTQNVRTISTIPLRLNTHTPPDVIEIRGEIYMPKK 183 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255 F ALN++ A G K +ANPRNAASG LR+L+P R L FF +G G+ + Y Sbjct: 184 AFYALNEQAAANGEKIFANPRNAASGSLRQLDPRITARRQLAFFAYGYGEITNYQLPETY 243 Query: 256 E-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E +L++ R PV + ++A T ++ Y + R LP+DIDG+V+KV+ F+ Q++ Sbjct: 244 EALLEQYRAWHIPVCSLHQKAATLPEALAAYQQFAKQREQLPFDIDGVVFKVNRFADQQR 303 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 G AR+PRW I+ KF + +TR+ I++Q+GRTG +TPVARL+PV I G ++ +A+LH Sbjct: 304 AGFLARAPRWAIAWKFPALEKTTRIEAIELQVGRTGAVTPVARLQPVTIAGVVVRSASLH 363 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I +DIRVGD + ++RAG+VIP+VV +++ +R PDA F+ P C Sbjct: 364 NAREI-----------ARKDIRVGDTIFIRRAGDVIPEVVSVVLEKRLPDAPVFAMPEHC 412 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C + +V++ + A RC+GGL C AQ++ L HF SR+A +I GLG++ + Sbjct: 413 PVCAAAIVQNEDE------AVARCSGGLHCPAQRVAALIHFASREALDIRGLGEKLIQQL 466 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E +R PAD+F L S ++ G S N+ +I+ + +L RFI Sbjct: 467 VAQE----FVRTPADLFCLTADDWASLPRM------GKKSAHNVMTAIDAAKKTTLARFI 516 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG+ A++LA ++ ++ A D +L + +GD++A I Sbjct: 517 YALGIRGVGSVNAQALAAHF----------GDLAAFMAADRAALQEIEGIGDVVAADIEH 566 Query: 615 FYQNPRN-ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+ + N + V S +K + + + K +V TGTL + R +AQ+ + L Sbjct: 567 FFADEDNRAVIAAIVAAGVHWSTELTKKIIDAPLLGKTVVITGTLPSLSRAEAQKRLETL 626 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 GA V++ +SR+TD +++G + GSKL +AQ V I++E Q Q Y + Sbjct: 627 GAKVTSQVSRQTDFLLLGADAGSKLARAQAFSVPIIDEAQLQTWWQHYGNAV 678 >gi|89097084|ref|ZP_01169975.1| DNA ligase [Bacillus sp. NRRL B-14911] gi|89088464|gb|EAR67574.1| DNA ligase [Bacillus sp. NRRL B-14911] Length = 668 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/708 (37%), Positives = 399/708 (56%), Gaps = 66/708 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL +L + Y YY KP + DSEYD L + + + P L ++ P ++ Sbjct: 11 KELHNLLNQYGYE---YYVLDKPSVPDSEYDRLLKELMELENEHPQLKTADSPT---QRV 64 Query: 79 GGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GGE+ L +F KV H P LSL +N EDLR F R+ ++ ++ + E KIDG Sbjct: 65 GGEI-LDMFEKVEHQTPMLSLGNAFNEEDLRSFDRRV----RQTAGENLSYVCELKIDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + ++YE G F+ A RGDG GED++ +R I +IP L L+ P IEVRGE ++ Sbjct: 120 AVALKYEDGLFIQGATRGDGTIGEDITVNLRTIRSIP--LRLSEPVSIEVRGEAFMPGRS 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F ALN G +P+ANPRNAA+G LR+L+P +R L+ F++G+ T + + Sbjct: 178 FEALNKGKEERGEEPFANPRNAAAGSLRQLDPRIAASRNLDIFLYGISNTGDTGVESHSA 237 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LGF N R+ + ++ Y + R L YDIDG+V KVD +LQ++LG Sbjct: 238 GLDYLETLGFKTNKERRKCASIEEVIEYVSSWTEKRPNLDYDIDGIVIKVDSLALQEELG 297 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++ T L DI++ +GRTG++TP A LEPV + G + A+LHNE Sbjct: 298 ATAKSPRWAIAYKFPAEEVVTTLRDIELSVGRTGVVTPTALLEPVRVAGTTVQRASLHNE 357 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +DI++GD+V+VK+AG++IP+VV+++ +R + + F P+ CP Sbjct: 358 DLIR-----------EKDIKIGDKVVVKKAGDIIPEVVNVLAEQRTGEEREFIMPTHCPE 406 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 407 CGSELVR----LEGEV--ALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEKVVSQLFA 459 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E I+ AD++ L ++ G+ SV NL +I + SLE+ +F Sbjct: 460 KE----LIKDVADLYKLTHEALIGMERM------GEKSVNNLVQAIEASKQNSLEKLLFG 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A++LA+++ S ++N++A + DD L + +G +A AIV F+ Sbjct: 510 LGIRHVGAKAAKTLAQHFSS-------MDNLMAASEDD---LTAINEIGGKMAGAIVAFF 559 Query: 617 QNPRNICAVEALLKEVSPSIGRHE----KNVSSE-----IENKKLVFTGTLQKIQRHKAQ 667 + + L++E+ S E K V++E K +V TG L + R++A+ Sbjct: 560 EQEE----AKELIRELKESGVNMEYKGPKPVAAEDSDSFFAGKTIVLTGKLSILSRNEAK 615 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 E + LG VS +S+KTD++I G++ GSKL KAQ LG+ I NEEQ + Sbjct: 616 EKIEALGGNVSGSVSKKTDLLIAGEDAGSKLAKAQDLGIDIWNEEQLV 663 >gi|320173862|gb|EFW49042.1| DNA ligase [Shigella dysenteriae CDC 74-1112] Length = 671 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 252/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + +L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHLELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLK--ALEAASI--------EELQKVPDVGIVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 558 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 616 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|255021565|ref|ZP_05293608.1| DNA ligase [Acidithiobacillus caldus ATCC 51756] gi|254968953|gb|EET26472.1| DNA ligase [Acidithiobacillus caldus ATCC 51756] Length = 659 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 248/691 (35%), Positives = 390/691 (56%), Gaps = 49/691 (7%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ P++ D+EYDAL R A+ A P+L ++ P ++G + V + I Sbjct: 9 AYYRDDAPVMSDAEYDALLRELRALEDAHPELRVADSPT---QRVGAAPVSAFGAVHYRI 65 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P SL+ +++ E+ R + R+ R + ++ + EPK DG + +RYE G+ V A Sbjct: 66 PMTSLDNVFSEEEFRDWWERLRR--ALPEVSNPVLSGEPKFDGLSVNLRYEGGRLVRAGT 123 Query: 154 RGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG GEDV+ +R I +P L PE+IE+RGEV + F LN E G P Sbjct: 124 RGDGVEGEDVTHNVRTIHNVPLQLQGSGWPELIELRGEVVLPVAAFRRLNRERERRGEAP 183 Query: 213 YANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+P R L FF G G+ SE +LQ+ GF V Sbjct: 184 FANPRNAAAGSLRQLDPRITARRPLAFFPWGFGECSEPLGDSHVHILQRFATWGFSVTEF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 +R + ++Y+ ++ + R ++P++IDGLV+KVD+ +L+++LG AR+PRW I+ KF Sbjct: 244 LRPIHGLDEALAYHADLAARRESMPFEIDGLVFKVDDLALRERLGFTARAPRWAIAWKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 +AST + DI +GRTG++TPVA+L+PV++ G +++ A+LHNED ++ Sbjct: 304 AHEASTLVEDIVASVGRTGVVTPVAQLQPVSVAGVMVSRASLHNEDEVR----------- 352 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +D+RVGD VLV+RAG+VIP++V ++ + R +QP+ P+ CP+C S ++R N Sbjct: 353 RKDVRVGDTVLVRRAGDVIPEIVTVLRDRRPAASQPWRMPTRCPVCGSEILRLPNE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 AHRCTGGL C AQ++ + HF SR A +I GLG++ + ++ AD++ Sbjct: 409 --VAHRCTGGLYCPAQRMGAILHFASRRAMDIRGLGEKLVAQLVAQG----LVKTVADLY 462 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L R + ++ GD S L D I R RF+++LGI VG A++LA Sbjct: 463 HLDRDTLLALPRM------GDRSAQKLLDEIAGSRQTEFARFLYALGIHQVGESTAKALA 516 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +++ ++ ++A + +D L VP VG ++A+AI+ F+ N ++ALL Sbjct: 517 QHF-------GDLETLMAVSAED---LQEVPDVGPVVAEAILHFFAQTHNREVIQALLAA 566 Query: 632 VS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 P + + E V ++ K+LV TG+L + R A+E + G V + +S + D +I Sbjct: 567 GVHWPKVRKREGGV---LQGKRLVLTGSLPHLSREAAKEKIEAAGGKVVSAVSAQVDYVI 623 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VG+ PGSKL KAQ LG+ ++E FL LL + Sbjct: 624 VGEAPGSKLAKAQALGIPQLDEAAFLALLAE 654 >gi|167624496|ref|YP_001674790.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4] gi|190359286|sp|B0TKB2|DNLJ_SHEHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167354518|gb|ABZ77131.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4] Length = 667 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 254/709 (35%), Positives = 403/709 (56%), Gaps = 55/709 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + E++ L E++ H+ YY P I DSEYD L R A+ P ++ P + Sbjct: 5 QTEIAQLTAELNQHNYRYYVDDSPSIPDSEYDRLLNRLKALETEHPQFCLADSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE ++ H P LSL+ +++ ++ F RI SI + EPK+DG Sbjct: 62 VGGEALAKFEQIQHLKPMLSLDNVFDEQEFTAFNQRI-----TDKTGSISYCCEPKLDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 ++I Y G F AA RGDG +GE+++ +R I +IP R+ N P ++EVRGEV + Sbjct: 117 AVSITYRDGVFERAATRGDGQTGENITENVRTIKSIPLRLRGDNFPLLVEVRGEVIMPHK 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTSEIFAK 252 F ALN+ A G K + NPRNAA+G LR+L+ +R L F+ + LG S A Sbjct: 177 AFDALNERARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESWELAD 236 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Y L+++R G PV+ V+ ++ ++ YYN+++ RS+L ++IDG+V KV++ + Q Sbjct: 237 SHYGQLEQLRSWGVPVSQEVKVCDSVAQVIEYYNDIQQRRSSLEFEIDGVVIKVNQIAHQ 296 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG A++PRW + KF ++ T L +D Q+GRTG +TPVARL+PV +GG ++NAT Sbjct: 297 LSLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNAT 356 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I L ++VGD ++++RAG+VIP++V ++ +R DA+ SFP+ Sbjct: 357 LHNADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAVVAEKRPDDAKEISFPA 405 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S V R G+ VA RCTGGL C AQ+ E +KHF SR A +I+G+G + ++ Sbjct: 406 RCPVCDSEVER----VEGEAVA--RCTGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVE 459 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 E ++ PAD+F L ++ T +E + G S T L +I+ + + R Sbjct: 460 QLIDKE----LVQSPADLFKL---TASAMTMLERM---GMKSATKLVAAIDVAKQTTFAR 509 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG A +LA Y+ + ++ + A N + + I+V VG I+A + Sbjct: 510 FLYALGIREVGEATAANLAAYF-------KTLDALKAANEE---TFIKVDDVGTIVAAHL 559 Query: 613 VEFYQNPRNICAVEALLKEVS--PSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 F P N+ ++ L++ P+I E+++S ++ + V TGTL ++ R+ A+ Sbjct: 560 AHFLAQPHNLEVIDKLIEAGVHWPAIEEVAEEDLS--LKGQTWVLTGTLTQLNRNDAKAK 617 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+ TD ++ G GSKL KAQ+LGVK+++EE + +L Sbjct: 618 LQLLGAKVAGSVSKNTDCLVAGAAAGSKLAKAQELGVKVIDEEALIAIL 666 >gi|262402686|ref|ZP_06079247.1| DNA ligase [Vibrio sp. RC586] gi|262351468|gb|EEZ00601.1| DNA ligase [Vibrio sp. RC586] Length = 669 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 257/711 (36%), Positives = 394/711 (55%), Gaps = 65/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L+ L Q + H YY P I D+EYD L R I P+L P+ P ++ Sbjct: 6 QRLTELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLEIEAQHPELI---TPDSPSLRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDL----RKFITRIYRFWQKKDDNSIFFTLEPKI 134 GG V H IP LSL+ ++ +L R+ RI Q F EPK+ Sbjct: 63 GGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSH------FCCEPKL 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG +++ YE G AA RGDG +GE+++ +R I +IP R+ ++ P +EVRGEV++ Sbjct: 117 DGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGVDFPVRLEVRGEVFM 176 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251 K F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + Sbjct: 177 PKAGFEALNARALQKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVG----VIE 231 Query: 252 KGQ-----YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 GQ Y+ +++ G P+ + + + S+Y ++ R +L Y+IDG+V KV Sbjct: 232 GGQLTTSHYQRFLQLKNWGLPICPETKVVTSLADVKSFYQDILQRRQSLVYEIDGVVIKV 291 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG Sbjct: 292 DDTQLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGV 351 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I+ L + VGD V+V+RAG+VIP++V +++ R DA+ Sbjct: 352 TVSNATLHNADEIERL-----------GVMVGDTVVVRRAGDVIPQIVSVVLERRQADAK 400 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+CQS + R G+ VA RCTGGL C AQ+ E LKHFVSR A ++EGL Sbjct: 401 PIRFPTCCPVCQSEIER----VEGEAVA--RCTGGLICQAQRKEALKHFVSRKAMDVEGL 454 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E + PAD+F L+ + T ++ G S N+ D++NK + Sbjct: 455 GDKVIEQLVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAK 504 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RF+++LGIR VG A +LA+++L+ + AQ LI VP VG Sbjct: 505 QTTLPRFLYALGIREVGEATALNLAQHFLTLEAIAQA----------SIEQLIEVPDVGG 554 Query: 607 IIAQAIVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 ++A + F+ RN + L L P + V S + K +V TG+ ++ R+ Sbjct: 555 VVASHLHAFFAQQRNQQVIAELVELGITWPVLAAVPVAVDSALAGKIVVLTGSFTQLSRN 614 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 A+ + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++++E+ + Sbjct: 615 DAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLTKAAELGIQVLDEQALI 665 >gi|160899029|ref|YP_001564611.1| NAD-dependent DNA ligase [Delftia acidovorans SPH-1] gi|254781308|sp|A9BZW4|DNLJ_DELAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160364613|gb|ABX36226.1| DNA ligase, NAD-dependent [Delftia acidovorans SPH-1] Length = 703 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 261/725 (36%), Positives = 395/725 (54%), Gaps = 56/725 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P + ++ ++ +L +++ YY P + D EYD + ++ A+ A+P+L Sbjct: 16 PESGAAPDKVLAKVQALRAQLNQWAHEYYVLDTPTVPDGEYDRVFQQLQALEGAYPELV- 74 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQKKDDNS 125 P+ P ++ G + L V H++P LS+ + E F RI + + + Sbjct: 75 --TPDSPTQRVIGAVLDGLMPVRHAVPMLSIRTETDNEATGAEAFDARIRKELELAEGAP 132 Query: 126 -IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----N 180 + + EPK DG + +RYE G+ V A RGDG GEDV+ IR I IP LSL Sbjct: 133 PVEYVAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRKIP--LSLPEGKG 190 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF 239 +P ++EVRGEVY+ + DF+ LN+ A G K +ANPRNAA+G +R+L+ R L+FF Sbjct: 191 VPPVVEVRGEVYMGRADFVKLNERQQAAGGKSFANPRNAAAGSVRQLDSGIAAQRPLSFF 250 Query: 240 VHGLGKTSEIFAKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 +GLG+ + G Y MLQ +R GFPV V A +V+++ M + R+T Sbjct: 251 AYGLGEITPAAQGGPDFVTHYAMLQTLRDWGFPVAPQVCIAKGAAELVAFHQRMGAERAT 310 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LPY+IDG+VYKV+ + Q+QLG +R PRW ++HK+ ++ TR+ IDIQ+GRTG LTP Sbjct: 311 LPYEIDGVVYKVNSLAQQRQLGFVSREPRWAVAHKYPAEEMPTRMEGIDIQVGRTGKLTP 370 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL PV +GG ++TNATLHN I+ + +R GD V+V+RAG+VIP+VV Sbjct: 371 VARLAPVAVGGVIVTNATLHNLFEIR-----------KKRVRTGDTVVVRRAGDVIPEVV 419 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + +R F P+ CPIC S V R K A HRCTGGL C AQ+ E + H Sbjct: 420 GRVPGDRPAYVPNFRMPAACPICGSAVARP------KGEANHRCTGGLFCPAQRKEAILH 473 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F +R A +IEGLG + +D +R D++ L + ++ + S Sbjct: 474 FAARRAMDIEGLGDKLVDQLVDGH----VVRTLPDLYRL------GLVALASLDRMAEKS 523 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 N+ D++ K + +L RF+F LGIR VG A+ LA+++ +++ I+ + + Sbjct: 524 AQNVLDALEKSKKTTLSRFLFGLGIRQVGESTAKDLARHF-------GQLDAIMDASVE- 575 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLV 653 L++V VG I+A++I F+ P N VE L V G + + + +V Sbjct: 576 --QLLQVRDVGPIVAESIHTFFAQPHNREVVEQLRACGVHWEEGAAREQTAQPLAGMTVV 633 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGTL + R +A+E + GA VS +S+KT ++ G GSKL KA++LGV +++E Sbjct: 634 LTGTLPTLGRDQAKEMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVTVLDEAG 693 Query: 714 FLFLL 718 L LL Sbjct: 694 MLALL 698 >gi|156973609|ref|YP_001444516.1| NAD-dependent DNA ligase LigA [Vibrio harveyi ATCC BAA-1116] gi|166216277|sp|A7MT54|DNLJ_VIBHB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|156525203|gb|ABU70289.1| hypothetical protein VIBHAR_01312 [Vibrio harveyi ATCC BAA-1116] Length = 670 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 255/715 (35%), Positives = 395/715 (55%), Gaps = 57/715 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + L L++ + YH YY P I D+EYD + R I P+L + P+ Sbjct: 3 ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPS-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL---- 130 ++GG+ +VTH +P LSL+ ++ +L F R D + T+ Sbjct: 61 -LRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKR-------AQDRVVGHTIKQYC 112 Query: 131 -EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188 EPK+DG +++ YE G V AA RGDG +GE+++ +R I IP ++ P +EVR Sbjct: 113 CEPKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKGWPTRLEVR 172 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT- 246 GEV++ K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 173 GEVFMPKAGFDKLNENARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVE 232 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 A YE +++ G P+ ++ ++ + +YY ++ + R L Y+IDG+V KV Sbjct: 233 GATLANSHYERFLQIKSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKV 292 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ ++Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEP+ +GG Sbjct: 293 DDIAIQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPIFVGGV 352 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I+ L + VGD+V+++RAG+VIP+VV +I R A+ Sbjct: 353 TVSNATLHNADEIERL-----------QVMVGDQVVIRRAGDVIPQVVSVIKERRPETAR 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++GL Sbjct: 402 EILFPDACPVCGSHVERIEGE------AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGL 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E + PAD+F L T ++ G S TN+ +++ K + Sbjct: 456 GDKVIEQLVDRE----MVETPADLFKLSAGVLTVLERM------GPKSATNVVNALEKSK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RF++SLGIR VG A +LA+Y+ N+ A LI V +G Sbjct: 506 LTTLPRFLYSLGIREVGEATAANLAQYF----------KNLDAIQQATEEQLIEVQDIGV 555 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 I+A+ I F+ +N V+ LL + P I ++ V +E K +V TGTL ++ R Sbjct: 556 IVAKHITTFFGEEKNQAVVQDLLAQGINWPEIAAPQEGVELPLEGKTVVLTGTLSQLGRS 615 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L++ Sbjct: 616 EAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLLNLMK 670 >gi|320354711|ref|YP_004196050.1| NAD-dependent DNA ligase [Desulfobulbus propionicus DSM 2032] gi|320123213|gb|ADW18759.1| DNA ligase, NAD-dependent [Desulfobulbus propionicus DSM 2032] Length = 670 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 249/708 (35%), Positives = 407/708 (57%), Gaps = 50/708 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A L L ++ +H YY PII D EYDAL R A+ +P+L ++ P+ Sbjct: 5 RAADRLEELRGQLRFHAHRYYVLDDPIISDGEYDALFRELLALEQEYPELVTADSPS--- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +++GG S +V H+ P LSL+ I+++++L F+ + +RF K D + F EPK+D Sbjct: 62 HRVGGPPLHSFAQVEHASPMLSLDNIFDVQELAAFVDKSFRFL--KADGPLCFMTEPKLD 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLS---LNIPEIIEVRGEV 191 G + + Y +G + RGDG GED++A ++ +P+IP R ++ + E + VRGEV Sbjct: 120 GLAVELVYRQGMLAVGSTRGDGLVGEDITAQLKTVPSIPLRFINNEGIGGAEELIVRGEV 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 ++SK F LN + G +ANPRNAA+G LR+L+P R L+FFV+G+ + Sbjct: 180 FLSKQGFQLLNQQRQEAGEPLFANPRNAAAGSLRQLDPRITARRRLDFFVYGVANPDSLA 239 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q E+ + LGFPVN V+ T I Y+ M R L Y+IDG+V K+++ Sbjct: 240 AKSQEEVFHGLARLGFPVNPLVQVCATEEEIRQRYHFMLGARHDLTYEIDGIVVKINDLG 299 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW ++ KF QA+T + ++ Q+GRTG +TPVA L PV I G ++ Sbjct: 300 LQQRLGTTARAPRWAVAWKFPATQATTVVERVEFQVGRTGAITPVAHLRPVEIDGVVVKR 359 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+D +++R +D+ D VLV+RAG+VIP++V +I +R P F Sbjct: 360 ATLHNQD---------EIVR--KDLYRYDTVLVQRAGDVIPEIVKVIAEKRDGRQVPILF 408 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C +V+ + AA RC C AQQ+++L HF + +IEGLGK+ Sbjct: 409 PAECPECGQPLVQKPDE------AAIRCVNP-DCPAQQVQKLIHFAGKSGLDIEGLGKKN 461 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + +R D+F L+ K+ ++ G+G+ S N+ ++I +RR++ L Sbjct: 462 VEQLVREG----LVRSIPDLFNLR------MDKLASLDGWGEKSARNILEAIEQRRSLPL 511 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +FI +LGIRHVG A LA+++ +E+ ++A + +L+RV +G+ A Sbjct: 512 AQFIAALGIRHVGEVTASVLAEHF-------RELRELMAAKKE---ALLRVEGIGEQTAD 561 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +++E++Q+P + VE L + + + R + + + +FTGTLQ + R +A++ V Sbjct: 562 SVIEYFQDPLTVAMVEQLNR--AGVVIRSSTAGGAPLTGRVFLFTGTLQTLSRDEAKQLV 619 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V+ +S + ++ G+ GSKL+KA+++G+ I+ E+QFL L+ Sbjct: 620 KALGAQVATSMSHRVTDVVSGEKAGSKLKKAKEMGLPILTEQQFLPLV 667 >gi|86148411|ref|ZP_01066703.1| DNA ligase [Vibrio sp. MED222] gi|85833825|gb|EAQ51991.1| DNA ligase [Vibrio sp. MED222] Length = 670 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 400/706 (56%), Gaps = 53/706 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 L L + + YH YY P I D EYD L ++ + P+L + P+ ++GG Sbjct: 9 LEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKLEEENPELVTVDSPS---QRVGG 65 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + +VTH IP LSL+ ++ +DL F R+ + N F EPK+DG ++ Sbjct: 66 QPLDGFTQVTHEIPMLSLDNAFSDDDLDAFNKRMSD--RAPTANLKTFCCEPKLDGLAVS 123 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 + Y KG V AA RGDG +GE+++ +R I +IP ++ PE IEVRGEV++ K F Sbjct: 124 LLYVKGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKAGFD 183 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKGQY 255 LN+ + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + +E+ + Y Sbjct: 184 KLNEMALKKGEKVFVNPRNAAAGSLRQLD-SRITAKRPLAFYAYSVGVVQGAEL-SNSHY 241 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + +++ G P+ +Q ++ + +YY ++ + R TL Y+IDG+V KVD+ + Q+ L Sbjct: 242 QRFLQLKAWGLPMCPETKQLSSLEDVKAYYQDIMTRRDTLAYEIDGVVIKVDDIAAQETL 301 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEP+ +GG ++NATLHN Sbjct: 302 GFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHN 361 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I L ++VGD V+++RAG+VIP++V ++ + R A+ FP CP Sbjct: 362 ADEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVFPDACP 410 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++GLG + ++ Sbjct: 411 VCNSAVER----VEGEAVA--RCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVIEQLV 464 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 E + PAD+F L S I + G S N+ ++NK ++ +L RF++ Sbjct: 465 DRE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTLARFLY 514 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 SLGIR VG A +LA+++ + E+ H L+ V +GDI+A + F Sbjct: 515 SLGIREVGEATAMNLAQHFKTL-----ELVQAATHEQ-----LVEVSDIGDIVASHLTSF 564 Query: 616 YQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + +N V+ L+ E+ P+I + +E K +V TG+L K+ R +A+ + Sbjct: 565 FSQEKNRAVVDQLI-ELGVNWPAIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKAALQA 623 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V+ +S+KTDI+ G+ GSKL KAQ LG++I EE + L+ Sbjct: 624 LGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669 >gi|317485271|ref|ZP_07944151.1| DNA ligase [Bilophila wadsworthia 3_1_6] gi|316923397|gb|EFV44603.1| DNA ligase [Bilophila wadsworthia 3_1_6] Length = 698 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 265/735 (36%), Positives = 421/735 (57%), Gaps = 78/735 (10%) Query: 9 IEALSIEQA-RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 +++L +E A +K L L + YH+ Y+ P I D EY+A AF +L R Sbjct: 6 LQSLLVEDADKKRLEELRAFVIYHNHRYHTLDAPEITDDEYNA----------AFQELLR 55 Query: 68 SED-------PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 E+ P+ P N+IGG++ SL H+ SL+ +++ E+ + F+ R+ Sbjct: 56 LEERHPEWRSPDSPTNRIGGQVLSSLETKAHTRRMYSLDNVFDAEEWQGFLKRLD---NA 112 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 ++ F +PK+DG + + YE G+FV A RGDG GE V+ ++ + +P+VL + Sbjct: 113 QEGLEHAFWCDPKMDGLALELVYENGRFVEALTRGDGEVGELVTEAMQTVRNLPKVLHGD 172 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF 238 PE +EVRGEV + DF LN+ + K +ANPRNAA+G +R+L+ T +T R L F Sbjct: 173 APERLEVRGEVIFRRRDFALLNERLRKENLKTFANPRNAAAGSIRQLD-TSVTASRPLRF 231 Query: 239 FVHGLG--KTSEIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 +G G + + YE ++ ++R GF G R + +YY + R +L Sbjct: 232 LAYGFGDVRFGGVQPWSTYEEVMGRLRDFGFETPPGGRLCRGSEEVEAYYASLSEKRESL 291 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 Y+IDG+V K+++ Q+ LG AR+PR+ ++ KF +QA+T LLDI +Q+GRTG+LTPV Sbjct: 292 AYEIDGVVMKLNDLEAQEALGYTARAPRFAVAWKFPAQQATTLLLDITVQVGRTGVLTPV 351 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A LEPVN+GG L++ ATLHNED I+ RD+R+GDRV+V+RAG+VIP+VV Sbjct: 352 AELEPVNVGGVLVSRATLHNEDEIR-----------NRDVRIGDRVVVQRAGDVIPEVVR 400 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 +++ER PD+QPF FP CP C R G++ A RC ++C A + L HF Sbjct: 401 AVLSERAPDSQPFVFPHVCPSCGQAASR----LEGEV--AWRCV-NVSCPAMIRQSLAHF 453 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 VS+ +IEGLG++ ++ S ++ PAD+FTL +++ +L + + V Sbjct: 454 VSKAGLDIEGLGQRWIELLVASG----RVKTPADLFTL---------RVDELLHYERMGV 500 Query: 536 ---TNLYDSINK-RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 T DS+++ ++ +L+R + +LGIRHVG + A++LA Y +++ + A + Sbjct: 501 KLATKFVDSLDRAKKEATLQRLLCALGIRHVGEQTAKTLAATY-------ADMDVLRAAS 553 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS----EI 647 ++ L +P +G +A +I F+ + N+ A+ A L+E+ R E V+S + Sbjct: 554 PEE---LQNLPDIGPEVASSIKAFFDDEPNV-ALLARLRELGLWPVRQEAAVASMPVGPL 609 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 +K++FTG+L I R KAQ+ GA ++ +SR+ ++++VGD PGSK EKAQ LG++ Sbjct: 610 AGQKILFTGSL-SIPRSKAQQMAENAGAEIAGSVSRRLNLLVVGDEPGSKREKAQALGIR 668 Query: 708 IMNEEQFLFLLQQYN 722 I++E FL LLQ N Sbjct: 669 IVDEAGFLALLQADN 683 >gi|269960659|ref|ZP_06175031.1| DNA ligase [Vibrio harveyi 1DA3] gi|269834736|gb|EEZ88823.1| DNA ligase [Vibrio harveyi 1DA3] Length = 670 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 254/714 (35%), Positives = 393/714 (55%), Gaps = 57/714 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + L L++ + YH YY P I D+EYD + R I P+L + P+ Sbjct: 3 ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPS-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL---- 130 ++GG+ +VTH +P LSL+ ++ +L F R D + T+ Sbjct: 61 -QRVGGQPLSEFSQVTHEVPMLSLDNAFDDAELDGFHKR-------AQDRVVGHTIKQYC 112 Query: 131 -EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188 EPK+DG +++ YE G V AA RGDG +GE+++ +R I IP ++ + P +EVR Sbjct: 113 CEPKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKDWPTRLEVR 172 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT- 246 GEV++ K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 173 GEVFMPKAGFDKLNENARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVE 232 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 A YE +++ G P+ ++ ++ + +YY ++ + R L Y+IDG+V KV Sbjct: 233 GATLANSHYERFLQIKSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKV 292 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ ++Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG Sbjct: 293 DDIAIQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGV 352 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I+ L + VGD+V+++RAG+VIP+VV +I R A+ Sbjct: 353 TVSNATLHNADEIERL-----------QVMVGDQVVIRRAGDVIPQVVSVIKERRPETAR 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++GL Sbjct: 402 EILFPDACPVCGSHVERIEGE------AVTRCTGGLVCQAQRKEALKHFVSRKALDVDGL 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E + PAD+F L T ++ G S TN+ +++ K + Sbjct: 456 GDKVIEQLVDRE----MVETPADLFKLSAGVLTVLERM------GPKSATNVVNALEKSK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RF++SLGIR VG A +LA+++ + Q LI V +G Sbjct: 506 LTTLPRFLYSLGIREVGEATAANLAQHFKNLDAIQQATEE----------QLIEVQDIGV 555 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 I+A+ I F+ +N V LL + P I ++ V +E K +V TGTL ++ R Sbjct: 556 IVAKHITTFFDEEKNQAVVRDLLGQGINWPDIAAPQEGVELPLEGKTVVLTGTLSQLGRS 615 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 616 EAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLLNLM 669 >gi|163856016|ref|YP_001630314.1| DNA ligase [Bordetella petrii DSM 12804] gi|254781264|sp|A9II69|DNLJ_BORPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|163259744|emb|CAP42045.1| DNA ligase [Bordetella petrii] Length = 697 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 264/730 (36%), Positives = 397/730 (54%), Gaps = 68/730 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QA + +++L EI H+ YY + P + D+EYDAL R + P+L P P Sbjct: 7 QAAQRVAALRNEIEQHNVRYYVHDDPSVSDAEYDALMRELIQLETDHPELV---TPESPT 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLE 131 ++G + V H++P LSL ++ ++++ F R+ + D + E Sbjct: 64 QRVGAAPLAAFGSVRHAVPMLSLGNAFDPDEVQAFDRRVGDTLRGAGLLRVDQQPEYFCE 123 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG I++RYE G V AA RGDG +GEDV+A +R I +P L P ++EVRGEV Sbjct: 124 LKLDGLAISLRYEDGVLVQAATRGDGQTGEDVTANVRTIRAVPLRLKGAAPRVLEVRGEV 183 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF------VHGL- 243 +++ +F LN A K + NPRNAA+G LR+L+P R L FF VHGL Sbjct: 184 LMNRAEFDRLNRSQAARDEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLP 243 Query: 244 GKTSEIF---AKGQYE-----------MLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEM 288 G+ + +F A G E ML + LG PVN R+A G++++Y ++ Sbjct: 244 GRQTALFDEPAPGAREESTLPRDTHGAMLDWLAELGLPVNTRHNRRAVGAEGLLAFYEQV 303 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 R LPYDIDG+VYKV+ QK LG AR+PR+ ++HKF ++A+TRLLDI++Q+GR Sbjct: 304 GRERPGLPYDIDGVVYKVNSLPAQKVLGFVARAPRFALAHKFPAEEATTRLLDIEVQVGR 363 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TPVARL+PV +GG +TNATLHNED ++ +D+R+GD V V+RAG+ Sbjct: 364 TGAITPVARLQPVFVGGVTVTNATLHNEDEVR-----------RKDVRIGDTVTVRRAGD 412 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 VIP+VV + +R DA+ F P CP+C S + R + A RCTGGL C+AQ+ Sbjct: 413 VIPEVVGPVPGKRPADAREFVMPVSCPVCGSAIERPEDE------AIARCTGGLFCAAQR 466 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + L H R A +I+GLG++ +D S ++ AD+++L + + ++ Sbjct: 467 KQTLLHAAGRKALDIDGLGEKLIDQLVDSG----RVKSLADLYSLNAFELAALERM---- 518 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G S NL +I++ R SL R +F+LGIRHVG AR +A+++ S + Sbjct: 519 --GKKSADNLVAAIDRARTPSLGRLLFALGIRHVGETTARDVARHFGSIETIM------- 569 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 + D +L P VG ++A +I F+ P N ++ LLK + + Sbjct: 570 ---DADEEALAGAPDVGPVVAGSIRRFFAEPHNREIID-LLKAQGVHPVPEAGPQGNTLA 625 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K V TGT+ R +A ++ G VS +S+KT ++ G+ GSKL KAQ+LGV + Sbjct: 626 GKTFVLTGTMPNWTRDEATRHILAAGGKVSGSVSKKTAYVVAGEEAGSKLAKAQELGVTV 685 Query: 709 MNEEQFLFLL 718 ++E+ LL Sbjct: 686 LDEDGLKALL 695 >gi|294340191|emb|CAZ88563.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Thiomonas sp. 3As] Length = 686 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 253/720 (35%), Positives = 384/720 (53%), Gaps = 62/720 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q + + L EI+ D YY P+ D++YDAL R I P+L P+ P Sbjct: 9 QPAERATQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPEL---RTPDSPT 65 Query: 76 NKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEP 132 ++GG V H++P LS+ E E F R+ R DD + + E Sbjct: 66 QRVGGAPLPEFAPVRHAVPMLSIQTETDTTPEGAAAFDQRVRNRLGLSADDPPVNYCAEL 125 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K DG I++RYE G+ V AA RGDG +GEDV+ +R I ++P L N P ++EVRGEV Sbjct: 126 KFDGLAISLRYEHGQLVQAATRGDGETGEDVTQNVRTIRSVPLQLRGNAPAVLEVRGEVL 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + + DF N G NPRN A+G +R+L+P R L F+ +G G+ + Sbjct: 186 MKRADFERYNARQRDKGLPTLVNPRNGAAGSIRQLDPAIAAQRPLAFYAYGWGEIAGWAQ 245 Query: 252 K--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + ML + G PV ++ ++ + + R +LP+DIDG+VYKVD Sbjct: 246 QPDTHHAMLDALETFGLPVAPQRVHGPGAQTLIDFHARIAAARDSLPFDIDGVVYKVDSL 305 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG R R P W ++HK+ ++ ST+++ IDIQ+GRTG LTPVA+LEPV +GG +T Sbjct: 306 ALQRELGFRNREPVWAVAHKYPAQERSTKVIGIDIQVGRTGKLTPVAKLEPVFVGGVTVT 365 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPF 428 NATLHNED ++ +D+RVGD V+V+RAG+VIP+VV ++++ R D +PF Sbjct: 366 NATLHNEDEVR-----------RKDVRVGDTVIVRRAGDVIPEVVSVVLSARPADVGEPF 414 Query: 429 S----FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 CP+C S +VR+ A RCTGGL C+AQ+ + + H+ SR A +IE Sbjct: 415 DLYQRLGGQCPVCGSAIVREAGE------ADWRCTGGLFCAAQRKQAILHYASRRAMDIE 468 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ +D A +R+ D++ L K+ + + S NL ++ Sbjct: 469 GLGEKLVDQLVD----AGIVRVLPDLYRL------GLLKLAALDRMAEKSAANLLQALQA 518 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L RF+++LGIRHVG A+ LA+++ + A + L+ VP V Sbjct: 519 SKTTTLARFLYALGIRHVGEATAKDLARHF----------GGLDAILDAPLEQLLEVPDV 568 Query: 605 GDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 G ++AQ+I F+ P N VE L E +P +++ + K LV TGTL Sbjct: 569 GPVVAQSIRTFFDQPHNREVVEQLRACGVHWSEAAP-----DRDAPKPLAGKTLVLTGTL 623 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A+ + G V +S+KTD ++ G GSKL KAQ+LGV +++E + L LL Sbjct: 624 PTLSREEAKARIEAAGGKVVGSVSKKTDYVVAGAEAGSKLAKAQELGVTVLDEAELLKLL 683 >gi|332532506|ref|ZP_08408384.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038149|gb|EGI74596.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 672 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 256/713 (35%), Positives = 401/713 (56%), Gaps = 57/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++++ L + H+ YY P I DSEYD L R A+ P+ ++ P K+ Sbjct: 7 EQINHLRTTLEQHNYNYYVLDTPSIPDSEYDRLLRELSALEMQHPEFLTADSPT---QKV 63 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG +V H +P LSL+ ++ E+ F RI D+ + F EPK+DG Sbjct: 64 GGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKDRLMSTDE--LTFCCEPKLDGLA 121 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++I Y G V AA RGDG +GE+++ ++ I +P L + P+ +EVRGEV++ F Sbjct: 122 VSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEVFMDSAGF 181 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE-IFAKGQY 255 LN E G K + NPRNAA+G LR+L+ + IT R L F+ + G ++ + Y Sbjct: 182 DKLNTEAQKRGEKVFVNPRNAAAGSLRQLD-SKITAKRPLMFYAYSTGLVADGSIPEDHY 240 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + L+K+ G P+ + + YY+++ + R L Y+IDG+V K+++ +LQ++L Sbjct: 241 QQLEKLTDWGLPLCPETKLVEGPKAALEYYSDILTRRGELKYEIDGVVIKINQKALQERL 300 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G AR+PRW I++KF ++ T+LLD++ Q+GRTG +TPVARLEPV +GG ++NATLHN Sbjct: 301 GFVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHN 360 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I L ++VGD V+++RAG+VIP++ +++ R DA+ FP CP Sbjct: 361 GDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPVTCP 409 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 IC S V + G+ VA RCTGGL C AQ+ + +KHF SR A +I+GLG + +D Sbjct: 410 ICDSHVEK----VEGEAVA--RCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLV 463 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 E I+ PAD+F L++ E++ G S NL ++ + + +L +F++ Sbjct: 464 DRE----LIKTPADLFILKQGH------FESLERMGPKSAKNLVTALEEAKGTTLAKFLY 513 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 SLGIR G A++LA ++L+ +N IN I SL +V VG+I+A + F Sbjct: 514 SLGIREAGEATAQNLANHFLTLENI---INASID-------SLTQVSDVGEIVATHVRGF 563 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK------LVFTGTLQKIQRHKAQEY 669 + N+ V AL+++ G + +S+ E ++ V TGTL + R+ A+ Sbjct: 564 FDEEHNLEVVNALIEQ-----GVNWPALSAPSEEEQPLAGLTYVLTGTLNTLNRNDAKAR 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + QLGA VS +S KTD ++ G+ GSKL KAQ LG+ I+ E++ + LLQ++N Sbjct: 619 LQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTEDELIELLQKHN 671 >gi|229843861|ref|ZP_04464002.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1] gi|229812855|gb|EEP48543.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1] Length = 670 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/715 (36%), Positives = 412/715 (57%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + ++++L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 5 QTKINNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 62 VGAKPLSGFSQIHHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G AA RGDG GED++A IR I IP ++L+ N P +EVRGE Sbjct: 115 PKLDGLAVSILYINGVLTQAATRGDGTIGEDITANIRTIRNIPLQLLTDNPPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ K + Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GVKSAENALNSLEKAK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFIF+LGIR VG A +LA ++ + + D L +VP VG+ Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLDALKEA----------DLDQLQQVPDVGE 555 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLVKAQELNITVLTEEEFL 665 >gi|145634259|ref|ZP_01789970.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA] gi|145268703|gb|EDK08696.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA] Length = 670 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 259/715 (36%), Positives = 411/715 (57%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 5 QTQLDNLRKTLRQYEFEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 62 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G AA RGDG +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 115 PKLDGLAVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTS 247 V++ F LN + K +ANPRNAA+G LR+L+P ++ LN + G+ + Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYSIGIAEGV 234 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 235 NL-PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ + Sbjct: 456 GGKLIEQLVNRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFIF+LGIR VG A +LA ++ + A + + L +VP VG+ Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665 >gi|226941791|ref|YP_002796865.1| DnlJ [Laribacter hongkongensis HLHK9] gi|254781355|sp|C1D4R5|DNLJ_LARHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226716718|gb|ACO75856.1| DnlJ [Laribacter hongkongensis HLHK9] Length = 692 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 251/698 (35%), Positives = 389/698 (55%), Gaps = 61/698 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ A P+LA ++ P ++GG + VTH +P Sbjct: 24 YYVLDAPSVPDAEYDRLFRELEALEAAHPELASADSPT---RRVGGAPLAAFASVTHRLP 80 Query: 95 TLSLEKIWNI---EDLRKFITRIYRFWQKKDD----NSIFFTLEPKIDGTMITIRYEKGK 147 LSL +++ D + F Q+ D + + + +EPK DG +++ YE G Sbjct: 81 MLSLNNVFSDMQDSDPAGRHAELAAFDQRVRDGLGLDEVEYAVEPKFDGLAVSLVYEHGV 140 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLS----------LNIPEIIEVRGEVYISKND 197 V A RGDG +GE+V+ +R + +IP L +P +EVRGEV + K D Sbjct: 141 LVQGATRGDGETGENVTENLRTVRSIPLRLENAPGDDLFAPAVVPARLEVRGEVLMLKRD 200 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E A G K +ANPRNAA+G LR+L+ +R L FF + + + + + Sbjct: 201 FERLNSEQDAAGLKRFANPRNAAAGSLRQLDSRITASRRLTFFAYAVAEADGVSLPATHS 260 Query: 257 -MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + + LG PV+ G+ Y M + R+ LP+DIDG+VYKV+ S Q +L Sbjct: 261 ATMDWLAGLGLPVSRQRSVVRGLAGLTGAYEAMLAQRAGLPFDIDGVVYKVNRLSEQARL 320 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PR+ ++HKF ++A T + DI +Q+GRTG +TPVARL+PV +GG +TNATLHN Sbjct: 321 GFVSRAPRFAVAHKFPAEEALTVVEDITVQVGRTGAITPVARLQPVFVGGVTVTNATLHN 380 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED ++ +D+ VGD V+V+RAG+VIP+VV ++ R P A+ F P CP Sbjct: 381 EDEVR-----------RKDVHVGDTVIVRRAGDVIPEVVSVLAERRPPQARAFEMPLVCP 429 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S +VR+ + A RC+GGL CSAQ + L+HF SR A ++EGLG++ +D Sbjct: 430 VCGSHIVREADE------AVARCSGGLYCSAQHKQALQHFASRKALDVEGLGEKLVDQLV 483 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 A + PAD+F L Q + ++E + GD S NL +++ R+ +L RF++ Sbjct: 484 D----AGLVHTPADLFAL---DQPALARLERM---GDKSAENLVRALDACRHTTLARFVY 533 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR+VG AR LA+++ + ++ ++A + D L+ P VG I+A++IV+F Sbjct: 534 ALGIRNVGEATARDLARHFGT-------LDALMAADQD---MLMTAPDVGPIVARSIVDF 583 Query: 616 YQNPRNICAVEALLKE-VS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + N V+ALL VS P + + + K V TGTL + R A+ + Sbjct: 584 FAEAHNREVVDALLAAGVSWPVVETVTSAGVAGVSGKTFVLTGTLPTLGRDDAKARIEAA 643 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 G V+ +S+KT ++ G+ GSKL+KA +LG+ +++E Sbjct: 644 GGKVTGSVSKKTHYVVAGEAAGSKLDKAHELGITVLDE 681 >gi|269968476|ref|ZP_06182487.1| DNA ligase [Vibrio alginolyticus 40B] gi|269826910|gb|EEZ81233.1| DNA ligase [Vibrio alginolyticus 40B] Length = 690 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 399/712 (56%), Gaps = 53/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + L L++ + YH YY P I D+EYD L R I PDL + P+ Sbjct: 23 ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPS-- 80 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPK 133 ++GG+ + +VTH +P LSL+ ++ +L F R ++ S+ + EPK Sbjct: 81 -QRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQ---ERVGSQSVKEYCCEPK 136 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++ +R I IP L N P +EVRGEV+ Sbjct: 137 LDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVF 196 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G + +E+ Sbjct: 197 MPKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGAEL 256 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A YE +++ G P+ ++ + + +YY ++ R LPY+IDG+V K+D+ Sbjct: 257 -AASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDDI 315 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++ Sbjct: 316 AVQERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVS 375 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +++GD V+++RAG+VIP+VV +I R A+ Sbjct: 376 NATLHNADEIERL-----------QVKIGDHVVIRRAGDVIPQVVSVIKERRPETARDIV 424 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R A RC GGL C AQ+ + LKHFVSR A +++GLG + Sbjct: 425 FPTQCPVCGSHVERIEGE------AVTRCMGGLVCQAQRKQALKHFVSRKALDVDGLGDK 478 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG-FGDVSVTNLYDSINKRRNI 548 ++ E ++ PAD+F L + I +L G S N+ +++ K + Sbjct: 479 VIEQLVDRE----MVKTPADLFKL-------SAGILTVLDRMGPKSAQNIVNALEKSKET 527 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA ++ + A N LI V +G ++ Sbjct: 528 TLPRFLYSLGIREVGEATAANLAMHF----------KTLGAIQNATEEQLIEVQDIGAVV 577 Query: 609 AQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 AQ I F+ +N V+ LL++ P I E+ +E K +V TGTL ++ R +A Sbjct: 578 AQHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTEA 637 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 638 KEALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELM 689 >gi|294504743|ref|YP_003568805.1| DNA ligase [Yersinia pestis Z176003] gi|262362805|gb|ACY59526.1| DNA ligase [Yersinia pestis D106004] gi|262366729|gb|ACY63286.1| DNA ligase [Yersinia pestis D182038] gi|294355202|gb|ADE65543.1| DNA ligase [Yersinia pestis Z176003] Length = 656 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 247/697 (35%), Positives = 401/697 (57%), Gaps = 49/697 (7%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 + +H+ Y+ P I D+EYD + ++ + P+L ++ P ++G + Sbjct: 1 MRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPT---QRVGAAPLDAFE 57 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 +V H +P LSL+ +++ E F R++ + K + F E K+DG +++ YE G+ Sbjct: 58 QVKHEVPMLSLDNVFDEESYLAFDKRVHD--RLKTAEPLTFCCELKLDGLAVSLLYENGE 115 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 V AA RGDG +GE+++A +R I IP R+ N+P +EVRGEV++ + F LN+E Sbjct: 116 LVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAGFEQLNEEAR 175 Query: 207 AVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIFAKGQYEMLQKMRCL 264 G K +ANPRNAA+G LR+L+P R L FF +G+G + + L + + Sbjct: 176 RKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHIQCLMQFKAW 235 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 G PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ +LQ+QLG AR+PRW Sbjct: 236 GLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLALQEQLGFVARAPRW 295 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++NATLHN D I+ L Sbjct: 296 ATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIERL-- 353 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 +R+GD V+V+RAG+VIP+VV +++ +R D + +FPS CP+C S D Sbjct: 354 ---------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGS----D 400 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 + G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + ++ + + + Sbjct: 401 IERVEGEAVA--RCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQ----YV 454 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 PAD+F Q + K+ + G S NL ++ K + + RF+++LGIR VG Sbjct: 455 ENPADLF------QLTAGKLTGLDRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGE 508 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 A +LA ++ + N D +L VP VG+++A+ ++ F N Sbjct: 509 ATAANLAAHFRTLDNL----------RAADIETLKSVPDVGEVVAKHVMNFLSEEHNQKV 558 Query: 625 VEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 +E L K VS P E++ S K +V TG+L + R +A++ +T LGA VS + Sbjct: 559 IEELEKVVSWPEPQQIVVEES-DSPFAGKTVVLTGSLTILSRDEAKDRLTALGAKVSGSV 617 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S+KT ++I G+ GSKL KAQ+LG+K+++E + + LL Sbjct: 618 SKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLL 654 >gi|311694426|gb|ADP97299.1| NAD-dependent DNA ligase [marine bacterium HP15] Length = 678 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 248/708 (35%), Positives = 393/708 (55%), Gaps = 47/708 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L I H+ YY P + D+EYD L R + +P+LA P ++ Sbjct: 10 QRVEELRSAIDDHNYRYYVLDDPRVPDAEYDRLFRELQGLETDYPELASD---TSPTRRV 66 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G S +V H +P LSL+ ++ ++LR F R+ +D + + EPK+DG Sbjct: 67 GSAAETSFEEVVHRLPMLSLDNAFSEDELRDFDRRVKDRLGITED--VEYVCEPKLDGLA 124 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G AA RGDG+SGED++A IR IP++P ++ ++P+++EVRGEVY+ K+ Sbjct: 125 VSLHYENGALTTAATRGDGYSGEDITANIRTIPSVPLKLRGDDVPDLVEVRGEVYMPKDG 184 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE-IFAKGQY 255 F LN + G K + NPRNAA+G LR+ T R L + + T E + Q+ Sbjct: 185 FEQLNRRLAERGEKTFVNPRNAAAGSLRQKKSTVTARRPLEMCAYSVAVTDESLLPDTQW 244 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L++++ GF +N +R+A + Y+E+ R LPY+IDG+V+KV+ QK L Sbjct: 245 EGLKRVQSWGFRINPEMRKARGAEECLEAYSELMDKRDGLPYEIDGIVFKVNRLDQQKAL 304 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I+ KF ++ T + D++ Q+GRTG +TPVARL+PV +GG ++NATLHN Sbjct: 305 GFVSRAPRWAIAQKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNATLHN 364 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L D+ +GD V ++RAG+VIP+VV ++ +R A+ P CP Sbjct: 365 MDEIRRL-----------DVHIGDTVFIRRAGDVIPQVVKVVAEKRPSGAREVELPRQCP 413 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S V++ G+ VA RC+GGL C AQ+ E ++H+ SR A +IEGLG + +D Sbjct: 414 VCDSDVIQ----IEGEAVA--RCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDIMV 467 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + AD++ L +T + + G+ S NL +I++ RN L RF++ Sbjct: 468 DQ----GMVETVADLYRL------TTDDLVKLERMGEKSAANLVAAIDRARNPVLWRFLY 517 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A++LA ++ + + A D SL VP VG I+A I F Sbjct: 518 ALGIREVGEATAKALAGHFGTLEAIAAA----------DEESLQTVPDVGPIVAGHIRSF 567 Query: 616 YQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++ N ++A L+E E + ++ + V TGTL + R +A+E + LG Sbjct: 568 FEQTHNRETLDA-LREAGVRWQEEEVREGEKPLKGQTWVLTGTLSGMTRDEAKEKLESLG 626 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A V+ +S+KT ++ G+ GSKL KA+QL V +++E + LL+++ Sbjct: 627 AKVAGSVSKKTACVVAGEAAGSKLAKAEQLEVPVLDEAGLVALLEEHG 674 >gi|5733399|gb|AAD49562.1|AF126866_1 NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis] Length = 672 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 256/704 (36%), Positives = 398/704 (56%), Gaps = 57/704 (8%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 + H+ YY P I DSEYD L R A+ P+ ++ P K+GG Sbjct: 16 LEQHNYNYYVLDTPSIPDSEYDRLLRELSALETEHPEFLTADSPT---QKVGGAALSKFE 72 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 +V H +P LSL+ ++ E+ F RI D+ + F EPK+DG ++I Y G Sbjct: 73 QVAHQVPMLSLDNAFSEEEFTAFNRRIKERLMSTDE--LTFCCEPKLDGLAVSIIYRDGV 130 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GE+++ ++ I +P L + P+ +EVRGEV++ F LN E Sbjct: 131 LVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEVFMDSAGFDKLNTEAEK 190 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCL 264 G K + NPRNAA+G LR+L+ + IT R L F+ + G ++ + Y+ L+K+ Sbjct: 191 RGEKVFVNPRNAAAGSLRQLD-SKITAKRPLMFYAYSTGLVADGNIPEDHYQQLEKLTDW 249 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 G P+ + ++YY ++ + RS L Y+IDG+V K+++ +LQ++LG AR+PRW Sbjct: 250 GLPLCPETKLVEGPKAALAYYRDILTRRSELKYEIDGVVIKINQKTLQERLGFVARAPRW 309 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 I++KF ++ T+LLD+D Q+GRTG +TPVARL+PV +GG ++NATLHN D Sbjct: 310 AIAYKFPAQEEITQLLDVDFQVGRTGAITPVARLKPVFVGGVTVSNATLHNSD------- 362 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 +V R G ++VGD V+++RAG+VIP++ +++ R DA+ FP+ CPIC S V + Sbjct: 363 --EVARLG--VKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPTTCPICDSHVEK- 417 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 G+ VA RCTGGL C AQ+ + +KHF SR A +I+GLG + +D E I Sbjct: 418 ---VEGEAVA--RCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRE----LI 468 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 + PAD+F L++ E++ G S NL ++ + + +L +F++SLGIR G Sbjct: 469 KTPADLFILKQGH------FESLERMGPKSAKNLVTALEEAKGTTLAKFLYSLGIREAGE 522 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 A++LA ++L+ +N IN I SL +V VG+I+A + F+ N+ Sbjct: 523 ATAQNLANHFLTLENV---INASID-------SLTQVSDVGEIVAAHVRGFFDEEHNLAV 572 Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKK------LVFTGTLQKIQRHKAQEYVTQLGAVVS 678 V AL+ + G + +S+ E ++ V TGTL + R+ A+ + QLGA VS Sbjct: 573 VNALIDQ-----GVNWPALSAPSEEEQPLAGLTYVLTGTLNTLNRNDAKARLQQLGAKVS 627 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +S KTD ++ G+ GSKL KAQ LG+ I+ E++ + LL ++N Sbjct: 628 GSVSAKTDALVAGEKAGSKLTKAQDLGIDILTEDELIELLIKHN 671 >gi|116334213|ref|YP_795740.1| NAD-dependent DNA ligase [Lactobacillus brevis ATCC 367] gi|122269104|sp|Q03Q13|DNLJ_LACBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116099560|gb|ABJ64709.1| NAD-dependent DNA ligase [Lactobacillus brevis ATCC 367] Length = 676 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 257/712 (36%), Positives = 406/712 (57%), Gaps = 53/712 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PI+ L++EQA +E + L ++ YY+ P + D YD + R A+ AFP++ Sbjct: 5 PIKTLTVEQAAEEAADLRPQLLEWGKQYYEADAPSVEDDVYDRVYARLVALETAFPEIVT 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++GG L KVTH IP LSL ++++++L +F R+ + D Sbjct: 65 ---PDSPTQRVGGSSRSDLPKVTHDIPMLSLGDVFSLDELTEFDERL----RGNVDTPFD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + E KIDG I++RYE GKFV + RG+G GED++A ++ I +IP+ LS P IEV Sbjct: 118 YNCELKIDGLAISLRYENGKFVQGSTRGNGQIGEDITANLKTIKSIPQTLSR--PLTIEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245 RGE Y+ K FLALN+ A G+ P+ANPRNAA+G LR+L+ T +T R L F++ + Sbjct: 176 RGECYMPKAAFLALNERREAAGQAPFANPRNAAAGSLRQLD-TRVTADRQLATFMYNVAD 234 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + Q +L ++ LGF N R A+ + +Y ++ R+ L Y IDG+V K Sbjct: 235 YEPLTTRTQSGLLDELAELGFTTNATYRVAHDMADVAAYIETYQAQRTELAYGIDGIVIK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 ++ LQ+ LG + PRW I++KF ++ TR+LDI+ IGRTG++TP A +EPV + G Sbjct: 295 ANDLPLQRSLGATVKVPRWAIAYKFPPEEVQTRVLDIEWTIGRTGVVTPTAIMEPVALAG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + + A+LHN DY+ +DIR+GD VL+ +AG++IP++ + +R +A Sbjct: 355 STVARASLHNPDYLI-----------AKDIRIGDTVLLHKAGDIIPEISQYVAAKRPAEA 403 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + + P+ CP C + +V L+ + A RC C AQ E + HF SR+A NI G Sbjct: 404 KAYVIPTTCPSCGAELVH-LDDEV-----ALRCINP-RCPAQLAEGMNHFASRNAMNIAG 456 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG Q + F ++ AD++ L +T ++ + FG+ S NL +I+ Sbjct: 457 LGPQIVAQLFDRN----LVQDVADLYRL------TTDQLLTLDKFGEKSAQNLLTAIDNS 506 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 RN SLER +F LGIRHVGA+ ARSLA + ++ +++A +++ + + VG Sbjct: 507 RNNSLERLLFGLGIRHVGAKAARSLAAAF-------GDMASLMAADSE---QISAIDTVG 556 Query: 606 DIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 IIA ++V ++ N + + ++A+ ++ + G N +SE K++V TG LQ++ Sbjct: 557 GIIADSVVTYFANTQVHELVAKLQAVGVNMTYTSGTPATNSTSEFTGKRVVLTGKLQELT 616 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R +A E++ Q GA V+ +S+KTD++I G+ GSKL KAQ L V + NE Q Sbjct: 617 RPQATEWLEQHGATVTGSVSKKTDLLIAGEAAGSKLAKAQSLDVPVWNEAQL 668 >gi|261345310|ref|ZP_05972954.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541] gi|282566645|gb|EFB72180.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541] Length = 678 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 242/708 (34%), Positives = 406/708 (57%), Gaps = 49/708 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ SL+Q++ +H+ Y+ P I D EYD L + + P+L ++ P + Sbjct: 11 KQKIDSLKQQLRHHEYLYHVLDAPEIPDVEYDKLMQELKGLEAENPELITTDSPT---QR 67 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V H +P LSL+ +++ E F R+ + + + F E K+DG Sbjct: 68 VGAAPLTAFGTVRHEVPMLSLDNVFDEESYLAFDKRVKD--RLNNHTELTFCCELKLDGL 125 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ YE G+ V AA RGDG GE+++ +R I IP R+ NIP +E+RGEV++ + Sbjct: 126 AVSLLYENGELVQAATRGDGSVGENITVNVRTIKAIPLRLRGDNIPARVEIRGEVFMPQK 185 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT-SEIFAKGQ 254 F A+N+E K +ANPRNAA+G LR+L+P R L F+ +G+G Sbjct: 186 GFEAMNEEARRTDGKIFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGNTLPDTH 245 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE L + + G PV+ V+ ++ +Y+ ++ IR TL +DIDG+V KV++ + Q++ Sbjct: 246 YERLMQFKAWGLPVSEHVQLRVGCQQVLDFYHHVEKIRPTLGFDIDGVVIKVNDIATQEK 305 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW + KF ++ T L D++ Q+GRTG +TPVARLEPV + G +++NATLH Sbjct: 306 LGFVSRAPRWATAFKFPAQEQLTLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLH 365 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L +R+GD V+++RAG+VIP++V +++++R D++ +FP+ C Sbjct: 366 NADEIERL-----------GVRIGDTVVIRRAGDVIPQIVSVVMDKRPADSREITFPTQC 414 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S D+ G+ VA RCTGGL C AQ E LKHFVSR A +++G+G + ++ Sbjct: 415 PVCHS----DIERVEGEAVA--RCTGGLTCGAQLKESLKHFVSRRAMDVDGMGDKIIEQL 468 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 +E ++ A ++ Q S K+ + G S L D++ K + +L RFI Sbjct: 469 VDAE----YVKNAAQLY------QLSAGKLTGLERMGPKSAQKLIDALEKSKQTTLARFI 518 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG A +LA +Y S ++ ++A + + SL V +G+++A+ +V Sbjct: 519 YALGIREVGEATAANLASHYAS-------LDAVMAADEE---SLKAVQDIGEVVAKHVVN 568 Query: 615 FYQNPRNICAVEALLKEVS---PSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F+ N + LL + P + + + S K +V TG++ ++ R +A++ + Sbjct: 569 FFHEEHNRQVIHDLLTIANIHWPEVKVVNSDEIDSPFAGKTVVLTGSMSRLTRDEAKDQL 628 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V+ +S+KTD++I G+ GSKL KA +LGVK+++E++ + LL Sbjct: 629 VALGAKVAGSVSKKTDMVIAGEAAGSKLAKAIELGVKVIDEDELVRLL 676 >gi|156740882|ref|YP_001431011.1| DNA ligase [Roseiflexus castenholzii DSM 13941] gi|190359279|sp|A7NHP6|DNLJ_ROSCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|156232210|gb|ABU56993.1| DNA ligase, NAD-dependent [Roseiflexus castenholzii DSM 13941] Length = 718 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 256/721 (35%), Positives = 387/721 (53%), Gaps = 68/721 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + +L ++I YH+ YY +P+I D+EYDAL R + A P+L P+ P ++ Sbjct: 8 RRAETLREQIRYHNYRYYVLDEPVISDAEYDALMRELRELEAAHPELV---TPDSPTQRV 64 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + KV H +P LSL ++ +R + R R D + F +EPKIDG Sbjct: 65 GAPPSEQFAKVQHVVPMLSLANAFDEAGMRAWYDRTLRLL--GSDAQVAFVVEPKIDGLA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS------------LNIPEIIE 186 +T+ Y G V A RGDG GEDV+A +R I +IP L +P ++E Sbjct: 123 VTLIYRNGVLVRGATRGDGEIGEDVTANLRTISSIPLRLGSFANDDSAPTNPTAVPPLLE 182 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGK 245 VRGEVY+ DF+ LN+++ G K ANPRNAA+G LR+ +P +R L FF +G+G+ Sbjct: 183 VRGEVYMRIADFMRLNEQLAVAGEKVAANPRNAAAGSLRQKDPAVTSRRPLRFFAYGVGQ 242 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + Q+E L +R LGFPVN R+ F ++Y E + R L Y++DG+V K Sbjct: 243 VEGVALQTQWETLHFLRALGFPVNRDARRFERFEEALAYCREWMTRRDELEYEVDGVVVK 302 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +D F+ Q +LG R PRW I+ KF ++A +RLLDI + +GRTG++TP A +EPVNIGG Sbjct: 303 IDSFAQQAELGVVGRDPRWAIAFKFPAREAVSRLLDIVVNVGRTGVITPNAVIEPVNIGG 362 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + NA+LHN DYI RDIR+GD V+VKRAG+VIP +V +V R Sbjct: 363 VTVRNASLHNADYI-----------AERDIRIGDYVIVKRAGDVIPHIVGPVVARRDGSE 411 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + + P+ CP C + + R G++ A+RC C AQ R++HFVSR A +I G Sbjct: 412 RVWQMPATCPACGTPLER----AEGEV--AYRCPNFGICPAQITRRIEHFVSRSAMDIAG 465 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G++Q+ F + ++ AD++TL + I G+G + NL ++I + Sbjct: 466 IGEKQVQLFVERG----WVQDVADLYTL------TPEHFHGIEGYGPKRIANLLNAIAES 515 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYY----LSYQNFAQEINNIIAHNNDDWLSLIRV 601 ++ L R I LGIR+VG +A+ LA ++ A EI+++ Sbjct: 516 KDRPLHRLIVGLGIRYVGEVVAQILADHFGSLDALAAASADEIDDLEG------------ 563 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTL 658 +G IA ++ E++ P + A+ A LK V + + G + K V TGTL Sbjct: 564 --IGPAIAASVAEYFARPES-KALIAKLKRVGVRTEAKGPAVAPKGDALAGKTFVITGTL 620 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQFLFL 717 + R +A + G VS +S+KTD ++VG P G+K+ KAQ+LG+ ++E L L Sbjct: 621 PSMSREEAGALIVAHGGRVSGSVSKKTDYLVVGSEPGGTKVAKAQELGIPTLDEAGLLAL 680 Query: 718 L 718 + Sbjct: 681 I 681 >gi|15642875|ref|NP_227916.1| DNA ligase [Thermotoga maritima MSB8] gi|7674016|sp|Q9WXV5|DNLJ_THEMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|4980590|gb|AAD35194.1|AE001696_8 DNA ligase [Thermotoga maritima MSB8] Length = 688 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 261/704 (37%), Positives = 394/704 (55%), Gaps = 49/704 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E+ L +EI YH+ YY + P+I D EYD L RR + +P+L P+ P ++ Sbjct: 12 EEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELERMYPELV---TPDSPTQRV 68 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ V HS+P LSL+ +N E++ +F R+ + Q+ + + + E KIDG Sbjct: 69 GGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKALQEAE---VEYVAELKIDGVS 125 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I +RYE G+FV A RGDG GEDVS ++ + +IP L L P IEVRGE+Y+ ++F Sbjct: 126 IALRYENGRFVLGATRGDGIEGEDVSENVKTVRSIP--LRLRKPVTIEVRGEIYMPVDEF 183 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 LNDE G P+ANPRNAA+G LR+LN + R L+ F++ + K Q+E Sbjct: 184 KRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSFIYYVVHPENYGLKTQWEA 243 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ ++ LGF VN R ++ Y+ E K + L Y +DG+V KV+ F Q+ LGE Sbjct: 244 LQFLKELGFKVNPHSRLCKNIQEVIDYWKEWKERKRELDYWVDGVVVKVNRFDFQRILGE 303 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +++PRW I+ KF +QA TR+LD+ IQ+GRTG+LTPVA LEPV + G ++ A+LHN + Sbjct: 304 TSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELEPVQLAGTIVKRASLHNFE 363 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI+ +DIR+GD V V++AG +IP++V I R + + P CP+C Sbjct: 364 YIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGNEKEIKPPDKCPVC 412 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +V + LNP A RC C A+ L+ VSR+A +IEGLG++ +D Sbjct: 413 GGKVGK-LNPDE----VAIRCLNP-HCPAKLKRALRTLVSREALDIEGLGEKLIDRLVD- 465 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A I+ ADIF L T + G G ++ + I + + L + I L Sbjct: 466 ---AGLIKDIADIFYL-----TPFDLAQLGPGIGQRTIAKILQEIEEAKKRPLHKLITGL 517 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI VG + A+ LA+++ S + A + + +L +P +G IA++IVE+++ Sbjct: 518 GIPMVGQKTAKILAEHFKSLEAIA----------DASYETLKDIPGIGPEIAKSIVEYFR 567 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 NP+ +E L K + EK V +I TGTL+ R + E++ +LGA Sbjct: 568 NPKTREIIEKLKK---AGVKLEEKVVKLDILRGLTFAVTGTLKNFTREEIIEFLEKLGAK 624 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V +SR TD +IVG+NPGSK E+A+ L VK+M+EE+FL +++ Sbjct: 625 VVNSVSRNTDYLIVGENPGSKYERAKMLKVKMMSEEEFLEFVRK 668 >gi|258404928|ref|YP_003197670.1| DNA ligase, NAD-dependent [Desulfohalobium retbaense DSM 5692] gi|257797155|gb|ACV68092.1| DNA ligase, NAD-dependent [Desulfohalobium retbaense DSM 5692] Length = 678 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 252/720 (35%), Positives = 400/720 (55%), Gaps = 57/720 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ + + ++SL + I +HD YY P I D+EYDAL + A+ H +P+L +DP Sbjct: 1 MAEQSVQSRVASLRETIRHHDYLYYVLDAPQISDNEYDALFKELQALEHRYPEL---DDP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G + + HS+P SL+ ++++E+ + ++ R+ R ++ I F ++ Sbjct: 58 ASPTKRVGQKPLAAFAHREHSLPMASLDNVFSLEEFQTYVQRLERLLPGEE---ITFWVD 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVR 188 PK+DG + + +E G++V A RGDG GEDV+A +R + T+P R + +P+ IEVR Sbjct: 115 PKMDGLAVEVIFEAGRYVAACTRGDGRVGEDVTAQMRTVRTVPLQLREEGVEVPDYIEVR 174 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEV + ++DF LN G +P+ANPRNAA+G +R+L+P R L FF +G+G Sbjct: 175 GEVVMHEDDFALLNKRQTENGARPFANPRNAAAGSVRQLDPEVTAKRPLRFFAYGVGVVR 234 Query: 248 EIFAKG----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 AK Q E++Q +R LG PV R A + + +YY ++ + R +L ++IDG+V Sbjct: 235 WSGAKTVWSRQSEVMQGLRELGLPVAPKARWAESAAAVQTYYQDLGANRHSLGFEIDGVV 294 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVD Q +LG +R+PRW ++ KF QA T L DI +Q+GRTG+LTPVA L PV + Sbjct: 295 AKVDRLEQQHRLGSTSRAPRWALALKFPAHQAETVLEDIQVQVGRTGVLTPVAVLRPVEV 354 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++ ATLHNED I+ + +RVGD VLV+RAG+VIP+VV + ++R Sbjct: 355 GGVTVSRATLHNEDEIR-----------AKGLRVGDPVLVQRAGDVIPEVVRPLTDKRTG 403 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + + F FP CP C S V R G V A RC AC AQ +++L HFVS+ +I Sbjct: 404 EEKTFVFPQTCPACGSPVSR-----LGDEV-ARRCVNA-ACPAQVVQQLIHFVSKAGLDI 456 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI- 542 EGLG++ + F D +R PAD+F L+ R ++ GD S N+ +I Sbjct: 457 EGLGERWVQIFV---DQGL-VRSPADLFRLKERDLVPLERM------GDKSARNMIQAIA 506 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + + L++ I +LGIR VG A LA + + A+ + + H +P Sbjct: 507 SAKSSARLDQLISALGIRLVGRRTAEILATSFEDLEALAEADSETLQH----------IP 556 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK-EVSP---SIGRHEKNVSSEIENKKLVFTGTL 658 +G +A ++ F+ P N + L + V P + + + S+ +E + V TG L Sbjct: 557 DIGPEVAASLRRFFTTPANQALIRDLHQLGVWPRRETGNGSDADQSAPLEGLRFVLTGAL 616 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R A++ + G V + +S K D ++ G+NPGSKL+KA++L + +++E LL Sbjct: 617 SDMSRSAAKDAIESRGGKVVSAVSSKVDYVVAGENPGSKLDKARELDIAVLDETGLHDLL 676 >gi|209522379|ref|ZP_03270993.1| DNA ligase, NAD-dependent [Burkholderia sp. H160] gi|209497185|gb|EDZ97426.1| DNA ligase, NAD-dependent [Burkholderia sp. H160] Length = 688 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 258/709 (36%), Positives = 399/709 (56%), Gaps = 51/709 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ + YY +P + D+EYD L + + I PDL P+ P ++GGE Sbjct: 21 LRAELERANYAYYVLDQPDLPDAEYDKLFKELERIEAEHPDLIV---PDSPTQRVGGEAA 77 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS---IFFTLEPKIDGTMIT 140 V H P LSL + ED+ F RI + + E K DG I+ Sbjct: 78 SGFEPVVHDQPMLSLNNGFADEDIVAFDKRIGDALGNNASEPAVPVDYAAELKFDGLAIS 137 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 +RY G FV A+ RGDG +GE+V+ +R I +IP ++ +P +++VRGEV + K DF Sbjct: 138 LRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPRVLDVRGEVLMFKRDFE 197 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQY-E 256 LN+ A ++ +ANPRNAA+G LR+L+ + IT R L+FF +G+G I + E Sbjct: 198 RLNERQRAAEQREFANPRNAAAGSLRQLD-SKITAQRPLSFFAYGIGVLEGIEMPATHSE 256 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L + +G PVN+ G++ +++ + R LPYDIDG+VYKV+ Q+ LG Sbjct: 257 LLDWYKEMGLPVNSERAVVQGAEGLLGFFHAVGEKRDRLPYDIDGVVYKVNRRDEQETLG 316 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PR+ ++HKF ++A TRL+ ID+Q+GRTG +TPVARLEPV +GGA +TNATLHNE Sbjct: 317 FVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNE 376 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D ++ +DIR+GD V+V+RAG+VIP+VV +++ R DA+ F P+ CP+ Sbjct: 377 DEVR-----------RKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAREFVMPTQCPV 425 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S + R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D + Sbjct: 426 CGSSIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVE 479 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +R PAD+F L + + F + S NL DS+ K ++ +L RFI++ Sbjct: 480 QN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYA 529 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG A+ LAK++ S ++ I+ + ++ L+ V VG ++A++I +F+ Sbjct: 530 LGIRHVGESTAKDLAKHFGS-------LDPIMDASLEE---LLEVNDVGPVVAESIHQFF 579 Query: 617 QNPRNICAVEALL---KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 N +E L K P K + + +V TGTL + R A+E + Sbjct: 580 AEDHNRTVIEQLRAPGKVAWPEGPPAPKAPQGVLVGQTVVLTGTLPNLSREDAKEMLEAA 639 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 GA V+ +S+KT ++ G + GSKL KA++LG+ +++E+ LL+ ++ Sbjct: 640 GAKVAGSVSKKTSYVVAGADAGSKLAKAEELGIPVLDEDGMRKLLEGHS 688 >gi|218710253|ref|YP_002417874.1| NAD-dependent DNA ligase LigA [Vibrio splendidus LGP32] gi|254782307|sp|B7VIK3|DNLJ_VIBSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218323272|emb|CAV19449.1| DNA ligase [Vibrio splendidus LGP32] Length = 670 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 256/705 (36%), Positives = 395/705 (56%), Gaps = 51/705 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 L L + + YH YY P I D EYD L ++ I P+L + P+ ++GG Sbjct: 9 LEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEDENPELVTVDSPS---QRVGG 65 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + +VTH IP LSL+ ++ +DL F R+ + N F EPK+DG ++ Sbjct: 66 QPLDGFTQVTHEIPMLSLDNAFSDDDLDAFNKRMSD--RAPTANLETFCCEPKLDGLAVS 123 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 + Y G V AA RGDG +GE+++ +R I +IP ++ PE IEVRGEV++ K F Sbjct: 124 LLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKAGFD 183 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYE 256 LN+ + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + Y+ Sbjct: 184 KLNEMALKKGEKVFVNPRNAAAGSLRQLD-SRITAKRPLAFYAYSVGVVQGAELSNSHYQ 242 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +++ G P+ +Q ++ + +YY ++ + R TL Y+IDG+V KVD+ + Q+ LG Sbjct: 243 RFLQLKAWGLPMCPETKQLSSLEDVKAYYQDIMTRRDTLAYEIDGVVIKVDDIAAQETLG 302 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEP+ +GG ++NATLHN Sbjct: 303 FVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNA 362 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L ++VGD V+++RAG+VIP++V ++ + R A+ FP CP+ Sbjct: 363 DEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVFPDACPV 411 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++GLG + ++ Sbjct: 412 CNSAVER----VEGEAVA--RCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVIEQLVD 465 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E + PAD+F L S I + G S N+ ++NK ++ +L RF++S Sbjct: 466 RE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYS 515 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A +LA+++ + E+ H L+ V +GDI+A + F+ Sbjct: 516 LGIREVGEATAMNLAQHFKTL-----ELVQAATHEQ-----LVEVSDIGDIVASHLTSFF 565 Query: 617 QNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +N V+ L+ E+ P+I + +E K +V TG+L K+ R +A+ + L Sbjct: 566 SQEKNRAVVDQLI-ELGVNWPAIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKAALQAL 624 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 GA V+ +S+KTDI+ G+ GSKL KAQ LG++I EE + L+ Sbjct: 625 GAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669 >gi|296046569|gb|ADG86426.1| NAD-dependent DNA ligase [Francisella novicida] Length = 689 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 252/715 (35%), Positives = 403/715 (56%), Gaps = 71/715 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY +P + D+EYD L + P+L + P+ K+GG+ S +VTH +P Sbjct: 22 YYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTIDSPS---QKVGGQALKSFTQVTHQLP 78 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ +++++D F+ R+ + D+ +I F EPK+DG +++RYE G+ + AA R Sbjct: 79 MLSLDNVFSLDDFHAFVKRVKD--RLNDNQAIVFCAEPKLDGLAVSLRYEHGQLIQAATR 136 Query: 155 GDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 GDG GE+++ IR I +IP L + P+I+EVRGEV++ K F ALN G Sbjct: 137 GDGSVGENITTNIRTIKSIPLKLMGTPGKDFPDIVEVRGEVFMPKASFDALNTXAKKRGE 196 Query: 211 KPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--------------KTSEIFAKGQ 254 K +ANPRNAA+G LR+L+ + IT R L F+ + LG T++ FA Sbjct: 197 KGFANPRNAAAGSLRQLD-SKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANSH 255 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E L +++ LG P+ VR + ++Y ++ + RS L Y+IDG V KVDE SLQK+ Sbjct: 256 HERLCQLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQKR 315 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW I++KF ++ T + D++ Q+GRTG +TPVARL+PV +GG ++NATLH Sbjct: 316 LGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATLH 375 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D I L ++V D V+++RAG+VIP++V +++++R +A FP+ C Sbjct: 376 NQDEITRL-----------GLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTSC 424 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V + A RCT GL C+AQ+ E +KHF SR A +++GLG + ++ Sbjct: 425 PVCDSAVAKPEGE------AVLRCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQL 478 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + I AD+F L Q ++ ++ G S TNL + + + ++ +L +FI Sbjct: 479 VDEK----LINTXADLFKLTEIQVSTIDRM------GKKSATNLINGLEQAKSTTLAKFI 528 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGIR VG A +LA ++ + + A + L V VG+++A+ I+ Sbjct: 529 YGLGIREVGEATAANLANHFYT----------LAAIESASLEDLQNVSDVGEVVAKNIIN 578 Query: 615 FYQNPRNICAVEALLKEVS-PSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F++ N+ V L + + P+I E ++ +I V TGTL ++ R +A+ + Sbjct: 579 FFKEEHNLAIVSGLSEVMHWPTIEIKSAEELPLAEQI----FVLTGTLTQMGRTEAKTAL 634 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 LGA VS +S+ T ++ GD GSKL KAQ LG+ ++ E+ + LL ++ T+ Sbjct: 635 QSLGAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGLVALLAEHGITI 689 >gi|269836970|ref|YP_003319198.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745] gi|269786233|gb|ACZ38376.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745] Length = 680 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 259/714 (36%), Positives = 404/714 (56%), Gaps = 62/714 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ ++ L + I ++ YY +P + D+EYDAL + A P+L P+ P + Sbjct: 7 QERIAELRKLIERYNYEYYVLDQPSVSDAEYDALMNELRELEAAHPELI---TPDSPTQR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + + V H IP LSL ++ ++LR++ R+YR ++D I F EPKIDG+ Sbjct: 64 VGAPPSSAFGTVRHEIPMLSLANAFSEQELRQWAERVYRLAGRRD---IEFVTEPKIDGS 120 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYI 193 ++I Y G + A RGDG GEDV+A IR + +P L +++PE++EVRGE+Y+ Sbjct: 121 AVSILYRNGVYERGATRGDGIQGEDVTANIRTVRNVPLRLHDVDGVHVPEVLEVRGEIYM 180 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 K+DF ALN G +ANPRNAA+G LR+L+P +R L F+ +G I Sbjct: 181 RKSDFEALNRRRGEAGEILFANPRNAAAGSLRQLDPNVTASRPLRFYAWDVG----IIEG 236 Query: 253 GQYEM-----LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 GQ+ L +R LG P T + + S+R L ++IDG+V KV+ Sbjct: 237 GQHNGTHTANLDLLRTLGIPTAPDYHVWQTIDEVWAECERWLSLRDELDFEIDGVVVKVN 296 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG +R PRW I++KF Q +T L DI++ +GRTG L PVA L+PV IGG + Sbjct: 297 DEDLQAELGTVSREPRWAIAYKFPAIQKTTILRDIEVNVGRTGSLNPVAILDPVEIGGVV 356 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHNED I+ L D+ +GDRV+V+R+G+VIPK+V ++V+ R D +P Sbjct: 357 VRRATLHNEDEIRRL-----------DLLIGDRVVVQRSGDVIPKIVAVVVSARDGDERP 405 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F+ P CP+C + VR G+++ R +C A+ E ++HFVSR A +IEG G Sbjct: 406 FTMPDHCPVCGAAAVR----LEGEVM---RYCVNASCPARLREAVRHFVSRGAMDIEGFG 458 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + F D I ADI+ L +I + GFGD + NL SI + Sbjct: 459 SRLAEQFV---DLGL-IHSVADIYEL------DWERIRQLEGFGDKRIANLQASIEASKE 508 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R + +LGIRHVG AR LA+++ S ++ I A + ++ L +P G + Sbjct: 509 RPLSRLLHALGIRHVGERNARLLAQHFNS-------MDRIAAASIEE---LQGIPGFGRV 558 Query: 608 IAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 +A+A+ +F++ P+N+ ++ L ++ + G V + K +V TG L+ + R Sbjct: 559 VAEAVYDFFREPQNLALIQRLRAHGLRMTEADG-DTAPVDGRLAGKTVVLTGRLESMTRE 617 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +AQE + ++GA V++ +SRKTD +IVG +PGSK ++A++LGV+I++E+ FL LL Sbjct: 618 QAQEALRRMGATVTSSVSRKTDFVIVGQDPGSKADRARELGVQILDEQAFLALL 671 >gi|262369277|ref|ZP_06062605.1| DNA ligase [Acinetobacter johnsonii SH046] gi|262315345|gb|EEY96384.1| DNA ligase [Acinetobacter johnsonii SH046] Length = 679 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 259/715 (36%), Positives = 397/715 (55%), Gaps = 61/715 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L Q ++ H+ YY +P I DSEYD L + A+ +P+ + P+ P+NK+G Sbjct: 10 QMRQLIQILAQHNHAYYVMDQPTIADSEYDQLFHQLKALEEQYPEYIQ---PDSPINKVG 66 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G+ VTH +P LSL ++N E+L F R ++ + +I + +E K DG I Sbjct: 67 GKPLAKFTSVTHVVPMLSLGNVFNQEELFAFARRAE---ERLPNQTIQYDVELKFDGLAI 123 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVYISKN 196 ++ YE+G V RGDG +GED++ ++ I +P+VLS + +P ++EVRGEV + K Sbjct: 124 SLWYEQGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSTDQGEVPTLLEVRGEVLMPKA 183 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A G K +ANPRNAA+G LR+L+P +R L F+ +G+ + + Sbjct: 184 GFEKLNAENEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPNHGQSTM 243 Query: 256 -EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L+ ++ GF V ++ + + Y ++ + R L +IDG+V KV+ Q+Q Sbjct: 244 SESLEWLQQFGFAVGERHFVCDSIQEVQAVYEQINAERPQLSVEIDGMVIKVNSLKQQQQ 303 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R PRW ++KF A T + +ID Q+GRTG LTPVARL PV +GG ++N TLH Sbjct: 304 LGFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNVTLH 363 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I L D+R+GD V V R+G+VIPKV + R DA PS C Sbjct: 364 NIGEIHRL-----------DVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDATEVELPSQC 412 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++ Sbjct: 413 PVCESPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESL 466 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + ++ ADI+ L ++ K+ I G+ SV NL DSI + +L FI Sbjct: 467 LHLD----LLKDVADIYHLHEHRE----KLLTIEKMGEKSVQNLIDSIENSKKTTLAAFI 518 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG AR LA + Q ++ + + D +L + P VGDI A+ IV+ Sbjct: 519 YALGIRGVGETTARMLANTF-------QTLDALRVADID---ALKKTPDVGDITAEWIVD 568 Query: 615 FYQNPRNICAVEALLKE-------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+Q P N+ ++ LL V+PS + + V TGTL + R +A Sbjct: 569 FFQAPHNLEVLDRLLAAGIHWDAPVAPS--------RQPLNGESWVVTGTLSTMGRDEAT 620 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + LGA VS +S KT ++ G+ GSKL+KA++LG+ ++NE +F+ L++ Y Sbjct: 621 QLLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIAVINEAEFIQLMKDYG 675 >gi|328473436|gb|EGF44284.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus 10329] Length = 670 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 251/710 (35%), Positives = 394/710 (55%), Gaps = 49/710 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + L L++ + YH YY P I D+EYD L R I PDL + P+ Sbjct: 3 ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPS-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPK 133 ++GG+ +VTH +P LSL+ ++ +L F R + SI + EPK Sbjct: 61 -QRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQ---DRIGGESIKQYCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++ +R I IP ++ + P +EVRGEV+ Sbjct: 117 LDGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-F 250 + K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 177 MPKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A YE +++ G P+ ++ ++ + +YY ++ R LPY+IDG+V K+D+ + Sbjct: 237 AASHYERFLQIKSWGLPMCQETKRVDSLADVKTYYQDILQRRDALPYEIDGVVIKIDDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 297 VQDRLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV +I R A+ F Sbjct: 357 ATLHNADEIERL-----------QVKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ + LKHFVSR A +++GLG + Sbjct: 406 PTQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKV 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L S + + G S N+ +++ K + +L Sbjct: 460 IEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF++SLGIR VG A +LA+++ S + LI V +G ++A+ Sbjct: 510 PRFLYSLGIREVGEATAANLAQHFKSLEAIQAATEE----------QLIAVQDIGVVVAK 559 Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I F++ +N V+ LL + P + E+ +E K +V TGTL ++ R +A+E Sbjct: 560 HITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEAKE 619 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 620 ALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELI 669 >gi|153838362|ref|ZP_01991029.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810] gi|149748221|gb|EDM59080.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810] Length = 670 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 251/710 (35%), Positives = 395/710 (55%), Gaps = 49/710 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + L L++ + YH YY P I D+EYD L R I PDL + P+ Sbjct: 3 ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPS-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPK 133 ++GG+ +VTH +P LSL+ ++ +L F R + SI + EPK Sbjct: 61 -QRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQ---DRIGGESIKQYCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++ +R I IP ++ + P +EVRGEV+ Sbjct: 117 LDGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-F 250 + K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 177 MPKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A YE +++ G P+ ++ ++ + +YY ++ R LPY+IDG+V K+D+ + Sbjct: 237 AASHYERFLQIKSWGLPMCPETKRVDSLADVKTYYQDILQRRDALPYEIDGVVIKIDDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 297 VQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV +I R A+ F Sbjct: 357 ATLHNADEIERL-----------QVKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ + LKHFVSR A +++GLG + Sbjct: 406 PTQCPVCGSHVERIEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKV 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L S + + G S N+ +++ K + +L Sbjct: 460 IEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF++SLGIR VG A +LA+++ S + LI V +G ++A+ Sbjct: 510 PRFLYSLGIREVGEATAANLAQHFKSLEAIQAATEE----------QLIAVQDIGVVVAK 559 Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I F++ +N V+ LL + P + E+ +E K +V TGTL ++ R +A+E Sbjct: 560 HITTFFEEEKNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEAKE 619 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 620 ALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELI 669 >gi|319897423|ref|YP_004135620.1| DNA ligase, nad(+)-dependent [Haemophilus influenzae F3031] gi|317432929|emb|CBY81295.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3031] Length = 679 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 260/715 (36%), Positives = 412/715 (57%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 14 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 70 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 71 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVNRI-------EDRLILLPKPLTFCCE 123 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G+ AA RG+G +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 124 PKLDGLAVSILYVNGELTQAATRGNGTAGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 183 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 184 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 242 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 243 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 303 DIGLQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 363 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 410 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 411 PIIFPTNCPVCDSQIIR----IEGETVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 464 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ + Sbjct: 465 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 514 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFIF+LGIR VG A +LA ++ + A + + L +VP VG+ Sbjct: 515 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 564 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 565 VVANRIFIFWREAHNVAVVEDLITQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 619 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD G+KL KAQ+L + ++ EE+FL Sbjct: 620 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGAKLAKAQELNITVLTEEEFL 674 >gi|91225892|ref|ZP_01260861.1| DNA ligase [Vibrio alginolyticus 12G01] gi|91189542|gb|EAS75818.1| DNA ligase [Vibrio alginolyticus 12G01] Length = 670 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 255/711 (35%), Positives = 395/711 (55%), Gaps = 51/711 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + L L++ + YH YY P I D+EYD L R I PDL + P+ Sbjct: 3 ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPS-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPK 133 ++GG+ + +VTH +P LSL+ ++ +L F R ++ S+ + EPK Sbjct: 61 -QRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQ---ERVGSLSVKEYCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++ +R I IP L N P +EVRGEV+ Sbjct: 117 LDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-F 250 + K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 177 MPKAGFEKLNELARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGAEL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A YE +++ G P+ ++ + + +YY ++ R LPY+IDG+V K+D+ + Sbjct: 237 AASHYERFLQIKSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 297 VQERLGFVARAPRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD V+++RAG+VIP+VV +I R A+ F Sbjct: 357 ATLHNADEIERL-----------QVKIGDHVVIRRAGDVIPQVVSVIKERRPETARDIVF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RC GGL C AQ+ + LKHFVSR A +++GLG + Sbjct: 406 PTQCPVCGSHVERIEGE------AVTRCMGGLVCQAQRKQALKHFVSRKALDVDGLGDKV 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG-FGDVSVTNLYDSINKRRNIS 549 ++ E ++ PAD+F L + I +L G S N+ +++ K + + Sbjct: 460 IEQLVDRE----MVKTPADLFKL-------SAGILTVLDRMGPKSAQNIVNALEKSKETT 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF++SLGIR VG A +LA ++ + A N LI V +G ++A Sbjct: 509 LPRFLYSLGIREVGEATAANLAMHF----------KTLGAIQNATEEQLIEVQDIGAVVA 558 Query: 610 QAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 Q I F+ +N V+ LL++ P I E+ +E K +V TGTL ++ R +A+ Sbjct: 559 QHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLTGTLSQLGRTEAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 619 EALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELM 669 >gi|222055066|ref|YP_002537428.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32] gi|254781339|sp|B9M861|DNLJ_GEOSF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221564355|gb|ACM20327.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32] Length = 669 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 251/706 (35%), Positives = 388/706 (54%), Gaps = 46/706 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A+ + L +EI+ H+ YY +P I D+EYD L R + FPDL ++ P Sbjct: 6 AQLRIQELHREINRHNYLYYVEDRPEITDAEYDLLLRELQQLEKEFPDLVTADSPT---Q 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G +V+H +P LSLE +N ++R F RI R+ I + EPK+DG Sbjct: 63 RVGAAPLDKFNQVSHRLPMLSLENAFNEGEMRDFDERIKRYLGLPMAKEIEYVCEPKMDG 122 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 + + YE+G + + RGDG+ GEDV+ ++ + +IP R+ P ++EVRGEVY+ Sbjct: 123 LAVELIYEEGSLTFGSTRGDGYVGEDVTQNLKTVKSIPLRLHCSPPPSLVEVRGEVYLGL 182 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN + G P+ANPRNAA+G LR+L+P R L+ F + G Q Sbjct: 183 APFQKLNMDREEAGLPPFANPRNAAAGSLRQLDPRITARRPLSIFCYAPGLVEGYEFTSQ 242 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +ML + G PVN +++ +++YY E+ R +LPY+IDG+V KVD F LQ+ Sbjct: 243 SQMLATLPQWGLPVNPLIKKVAGIDAVLAYYREIGETRESLPYEIDGVVIKVDSFDLQRD 302 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LGE+ RSPRW I+ KF +QA T + DI Q+GRTG++TPVA L+PV + G +++ ATLH Sbjct: 303 LGEKTRSPRWAIAWKFPPRQAVTVVEDIVPQVGRTGVITPVAHLKPVEVSGVMVSRATLH 362 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N + ++ +DIR GD V+V+RAG+VIP VV ++ +R A+ + P+ C Sbjct: 363 NWEEME-----------KKDIRKGDTVVVERAGDVIPAVVKVMTEKRLEGAELLAVPAAC 411 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S +V+ G++ A RC GL C AQ E + HF SR A +IEG+G + ++ Sbjct: 412 PECGSEIVK----IPGEV--AIRCL-GLTCPAQIRETIIHFASRHAMDIEGMGDKYVEQL 464 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E ++ AD++ L ++ ++ GD NL ++I ++ L RFI Sbjct: 465 LRLE----LVKTVADLYYLTKKDFMRFERM------GDKLAENLLNAIEASKHRELSRFI 514 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIRHVG A+ LA + S ++ + L+ + VG +AQ++ Sbjct: 515 FALGIRHVGEHTAKLLASAFGSVEHLEKATEE----------ELLSIREVGPQVAQSVRT 564 Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F++NP N +E + V P++ EK + K VFTG L + R A+ V Sbjct: 565 FFRNPANREVIERMFAAGVRPAV--EEKRLGGRFTGKTFVFTGALTRFTRDDAKNMVENE 622 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G + +S+KTD ++ G GSKL+KA+QLGV ++ E++FL +L+ Sbjct: 623 GGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVNVLTEDEFLKMLE 668 >gi|327438552|dbj|BAK14917.1| NAD-dependent DNA ligase [Solibacillus silvestris StLB046] Length = 665 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 260/706 (36%), Positives = 398/706 (56%), Gaps = 60/706 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ EL+ L E Y YY KP++ DS YD L A+ A P+ P+ Sbjct: 4 IEQRIAELNKLLHEYGY---AYYVLDKPVVEDSVYDQLLHELIALEEANPEFIY---PDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + KVTH LSL +N EDLR F +I + K + + E K Sbjct: 58 PTQRVGGMVLEGFKKVTHETAMLSLSNAFNEEDLRDFDRKIEQAIGK----NYSYVCELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I++RYE G FV A RGDG GED++A ++ I IP L LN P +EVRGE Y+ Sbjct: 114 IDGLAISLRYENGVFVQGATRGDGTVGEDITANLKTIRAIP--LRLNEPVTLEVRGEAYM 171 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA- 251 K F LN+ G + +ANPRNAA+G LR+L+P +R L+ F++ +G E + Sbjct: 172 PKKSFEKLNERRAENGEELFANPRNAAAGSLRQLDPKIAASRNLSTFIYAVGGDGESYGI 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 G +EML+ + LGFP N T ++++ + R L Y+IDG+V KV+ ++ Sbjct: 232 DGHWEMLKYLEELGFPSNKEREYCETIEDVLAFIEKWTEARPNLSYEIDGIVIKVNRYAH 291 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A L PV + G ++ A Sbjct: 292 QDELGFTAKSPRWAIAYKFPAEEVITKLLDIELTVGRTGVITPTAILTPVLVAGTTVSRA 351 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED I+ +DIR+ D V+V++AG++IP++V +++ +R DA P+ P Sbjct: 352 SLHNEDLIR-----------EKDIRIDDTVIVRKAGDIIPQIVGVVLEQRPDDAVPYKMP 400 Query: 432 SFCPICQSRVVR-DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP C VVR D + A RC C AQ E +KHFVSR+A NI+GLG++ Sbjct: 401 THCPACDEEVVRIDTD-------VALRCVNP-QCPAQIAEGVKHFVSRNAMNIDGLGEKV 452 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + I+ A ++ L Q + N+ G S TNL +++ + ++ SL Sbjct: 453 VEQLLRE----GYIQDVAGLYELTVEQ------LINLERMGQKSATNLVEALIQSKDNSL 502 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVG + A+ LA ++ + I+ ++ +D L + +GD +A+ Sbjct: 503 ERLLFGLGIRHVGEKAAKILAAHF-------ETIDALMVATEED---LKDIHEIGDKMAE 552 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHK 665 +IV ++ N + +E LK ++ K + E K +V TG LQ++ R++ Sbjct: 553 SIVAYFANEQVQQLIER-LKGFGLNMSYKGKKIVVEAGANPFAGKTIVLTGKLQQLTRNE 611 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 A+ + QLG V+ +S+KTD++IVG++ GSKLEKAQ LG++I +E Sbjct: 612 AKAKIEQLGGTVAGSVSKKTDLVIVGEDAGSKLEKAQSLGIEIWDE 657 >gi|84393803|ref|ZP_00992550.1| DNA ligase [Vibrio splendidus 12B01] gi|84375600|gb|EAP92500.1| DNA ligase [Vibrio splendidus 12B01] Length = 670 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 258/705 (36%), Positives = 394/705 (55%), Gaps = 51/705 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 L L + + YH YY P I D EYD L ++ I P+L + P+ ++GG Sbjct: 9 LEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTVDSPS---QRVGG 65 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + +VTH IP LSL+ ++ EDL F R+ + N F EPK+DG ++ Sbjct: 66 QPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSD--RAPMANLKTFCCEPKLDGLAVS 123 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 + Y G V AA RGDG +GE+++ +R I +IP ++ PE IEVRGEV++ K F Sbjct: 124 LLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKAGFD 183 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYE 256 LN+ + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + Y+ Sbjct: 184 KLNEMALKKGDKVFVNPRNAAAGSLRQLD-SRITAKRPLAFYAYSVGVVQGAELSNSHYQ 242 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +++ G P+ +Q ++ + +YY ++ + R L Y+IDG+V KVD+ + Q LG Sbjct: 243 RFLQLKGWGLPMCPETKQLSSLEDVKAYYQDIMTRRDALAYEIDGVVIKVDDIAAQVTLG 302 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEP+ +GG ++NATLHN Sbjct: 303 FVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNA 362 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L ++VGD V+++RAG+VIP++V ++++ R A+ FP CP+ Sbjct: 363 DEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVLDRRPETARDIVFPDACPV 411 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++GLG + ++ Sbjct: 412 CNSAVER----VEGEAVA--RCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVIEQLVD 465 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E + PAD+F L S I + G S N+ ++NK ++ +L RF++S Sbjct: 466 RE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYS 515 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A +LA+++ + E+ H L+ V +GDI+A + F+ Sbjct: 516 LGIREVGEATAMNLAQHFKTL-----ELVQAATHEQ-----LVEVSDIGDIVASHLTSFF 565 Query: 617 QNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +N VE LL E+ P+I + +E K +V TG+L K+ R +A+ + L Sbjct: 566 SQEKNRAVVEQLL-ELGVNWPTIEAVADDQELPLEGKVVVLTGSLSKLGRSEAKAALQAL 624 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 GA V+ +S+KTDI+ G+ GSKL KAQ LG++I EE + L+ Sbjct: 625 GAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALI 669 >gi|319793880|ref|YP_004155520.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS] gi|315596343|gb|ADU37409.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS] Length = 694 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 256/719 (35%), Positives = 386/719 (53%), Gaps = 66/719 (9%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +++ H YY P + D+EYD L +R A+ FP+L P+ P ++GG++ Sbjct: 14 LSEQLHKHAHLYYVLDAPELPDAEYDKLFQRLQALETEFPEL---RTPDSPTQRVGGKVL 70 Query: 84 LSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMIT 140 KV H +P LS+ +I F R+ + +D + + E K DG + Sbjct: 71 DGFTKVRHKVPMLSIRTETDITPGGASAFDARVRKELGLAEDGPQVSYVCELKFDGLAMN 130 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 +RYE G V AA RGDG GEDV+ IR + IP LS P ++EVRGEVY+ + DF A Sbjct: 131 LRYEDGVLVQAATRGDGEVGEDVTQNIRTVREIPLRLSGKAPPVVEVRGEVYMKRADFDA 190 Query: 201 LND---EMIAVGRKP---YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 LN+ E IA G+K + NPRNAA+G +R+L+P R L+FF +GLG+ + G Sbjct: 191 LNERQREKIAAGQKNEKIFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGLGEVTPAAEGG 250 Query: 254 -----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ LQ+ GFPV +A +++++ + R LPYDIDG+VYKVD Sbjct: 251 PDCPTQFDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYDIDGVVYKVDS 310 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ+QLG +R PRW ++HK+ ++ T +L I+IQ+GRTG LTPVA+L PV +GG + Sbjct: 311 IELQRQLGFVSREPRWAVAHKYPAQEQLTDVLGIEIQVGRTGKLTPVAKLAPVFVGGVTV 370 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV-------NER 421 TNATLHNED + +D+RVGD V+V+RAG+VIP+VV ++ ER Sbjct: 371 TNATLHNEDEAR-----------RKDVRVGDTVIVRRAGDVIPEVVGVVPESLAKPEGER 419 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P F+ P CP+C S VR+ +RCTGGL C+AQ+ E + HF +R A Sbjct: 420 GP---VFTMPHKCPVCGSEAVREEEE------VDYRCTGGLFCAAQRKEAILHFAARRAV 470 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +++GLG + ++ A IR D++ L T + + + S NL D+ Sbjct: 471 DVDGLGDRLVEQLVD----ANLIRTLPDLYKL------GFTTLAGLDRMAEKSAKNLVDA 520 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + + +L RF+F LGIRHVG A+ LAK++ + ND Sbjct: 521 LEASKKTTLPRFLFGLGIRHVGESTAKDLAKHFGKLDAIMDATEQQLLEVND-------- 572 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VG ++AQ++ F+ P N VE L ++ G + V TGTL Sbjct: 573 --VGPVVAQSLRTFFDQPHNREVVEQLRACGLTWEEGEPAARAPKPLAGLTFVITGTLPT 630 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A++ + GA V+ +S+KT ++ G+ GSKL+KA+++GV +++E + L +L+ Sbjct: 631 LGRDEAKDKLEAAGAKVAGSVSKKTHYLVAGEEAGSKLDKAREIGVAVIDEARMLEILE 689 >gi|33597876|ref|NP_885519.1| DNA ligase [Bordetella parapertussis 12822] gi|81425567|sp|Q7W0T4|DNLJ_BORPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33574305|emb|CAE38638.1| DNA ligase [Bordetella parapertussis] Length = 696 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/729 (36%), Positives = 397/729 (54%), Gaps = 71/729 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ ++ L EI H+ YY + P + D+EYDAL R A+ P+L P+ P + Sbjct: 9 QQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELV---TPDSPTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD----DNSIFFTLEPK 133 +G V H++P LSL ++ ED+R F R+ + D + + E K Sbjct: 66 VGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I++ YE+G+ AA RGDG +GEDV+A IR I +P L P ++EVRGEV + Sbjct: 126 LDGLAISLCYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLH-GAPRVLEVRGEVLM 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF------VHGLGK- 245 ++ +F LN A G K + NPRNAA+G LR+L+P R L FF VHGL + Sbjct: 185 NRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEG 244 Query: 246 --------------TSEIFAKGQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKS 290 S + ML + LG PVN + G++++Y + Sbjct: 245 MPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGK 304 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 +R+ LPYDIDG+VYKVD Q+ LG AR+PR+ ++HKF ++A T+LL I++Q+GRTG Sbjct: 305 LRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTG 364 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVARL PV +GG +TNATLHNED I+ +D+R+GD V+V+RAG+VI Sbjct: 365 AITPVARLAPVFVGGVTVTNATLHNEDEIR-----------RKDVRIGDTVIVRRAGDVI 413 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+VV ++ +R DA+ F + CPIC S + R G+ +A RCTGGL C+AQ+ + Sbjct: 414 PEVVGPVLEKRPADAREFVMLTACPICGSAIER----PEGEAIA--RCTGGLFCAAQRKQ 467 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 L H R A +IEGLG++ +D ++ ++ ADI++L + ++ + Sbjct: 468 TLLHAAGRKALDIEGLGEKLIDQLVDAD----RVKSLADIYSL------TAFELAALERM 517 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 G S NL +I++ R +L R +F+LGIRHVG AR +A+++ S + Sbjct: 518 GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASEE---- 573 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIEN 649 +L+ VP VG ++A +I F+ P N VE L ++ V P + S + Sbjct: 574 ------ALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTS--LAG 625 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K V TGT+ R +A + G VS +S+KT ++ G++ GSKL KAQ+LGV ++ Sbjct: 626 KTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVL 685 Query: 710 NEEQFLFLL 718 +E+ LL Sbjct: 686 DEDGLKALL 694 >gi|299535244|ref|ZP_07048568.1| DNA ligase [Lysinibacillus fusiformis ZC1] gi|298729365|gb|EFI69916.1| DNA ligase [Lysinibacillus fusiformis ZC1] Length = 667 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 256/721 (35%), Positives = 403/721 (55%), Gaps = 71/721 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ EL+ L E Y YY KP++ DS YD L + A+ A P L P+ Sbjct: 4 IEQRIAELNKLLHEYGY---AYYVLDKPVVADSVYDQLLQELIALEEANPSLIY---PDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + KVTH P LSL +N DLR+F ++ ++ + + E K Sbjct: 58 PTQRVGGAVVEGFKKVTHDYPMLSLSNAFNEADLREFDRKV----RQAIGDQFSYVCELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+++YE G FV A RGDG GED++A ++ I IP L L P IEVRGE Y+ Sbjct: 114 IDGLAISLKYENGMFVQGATRGDGVVGEDITANLKTIRAIP--LRLKEPITIEVRGEAYM 171 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA- 251 K F LN + G + +ANPRNAA+G LR+L+P +R L+ F++ +G E++ Sbjct: 172 PKKSFENLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGI 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 G EML + LGFP N ++ +T ++++ R L Y+IDG+V KVD ++ Sbjct: 232 DGHAEMLDYLEGLGFPSNKERQRCSTIEEVMAFIEHWTENRPKLAYEIDGIVIKVDRYAQ 291 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG A+SPRW I++KF ++ T LLDID+ +GRTG++TP A L PV + G + A Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED I+ +DIR+GD V++++AG++IP+VV +++ +R D+ PF P Sbjct: 352 SLHNEDLIR-----------DKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPEDSVPFVMP 400 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S ++R G++ A RC AC AQ E +K+FVSR+A NI+GLG + + Sbjct: 401 KNCPVCDSELIR----IEGEV--ALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + +++ I +D++ L Q ++ G+ S TNL ++I + S+E Sbjct: 454 EQLLRAD----LIHDVSDLYHLTVEQLVELERM------GEKSATNLVNAIQASKENSME 503 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + LGIRHVG + A+ +++ + S + ++A + L+ + +GD +A + Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEEFGSME-------AVMAATEE---QLVAIYEIGDKMASS 553 Query: 612 IVEFYQNPRNICAVEALL----------KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +VE++ N +E L K+V +IG S K +V TG L+++ Sbjct: 554 LVEYFSNEDARAVIERLADAGVNMTYKGKKVEVAIG------DSPFAGKTIVLTGKLEQL 607 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R++A+ + +LG V+ +S+KTD++I G + GSKL KA+QLG+++ E+ L++Q Sbjct: 608 TRNEAKAKIEELGGTVTGSVSKKTDLVIAGADAGSKLTKAEQLGIEVWTEDN---LIEQL 664 Query: 722 N 722 N Sbjct: 665 N 665 >gi|312173113|emb|CBX81368.1| DNA ligase [Erwinia amylovora ATCC BAA-2158] Length = 670 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 250/715 (34%), Positives = 410/715 (57%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + +++ L + +++ Y+ P + D+EYD L + +P+L S+ P Sbjct: 1 MESLQDKITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTSDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ ++ E F R+ + DD I F E K Sbjct: 60 --QRVGAAPLSAFGQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YEKG+ V AA RGDG +GED++A +R I IP LS + IPE +EVRGEV+ Sbjct: 116 LDGLAVSLLYEKGQLVRAATRGDGTTGEDITANVRTIRAIPLRLSGDSIPERLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + F +N + + G+K +ANPRNAA+G LR+L+P R L FF +GLG + E+ Sbjct: 176 MPLAGFEQMNQQARSCGQKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGLGLLEGGEM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + LQ+ + G PV++ VR +++ ++ +Y+++++ R TL +DIDG+V KVD Sbjct: 236 -PRSHMARLQQFKAWGLPVSDRVRLSHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+QLG AR+PRW I+ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 ELQEQLGFVARAPRWAIAFKFPAQEQITTVRDVEFQVGRTGAMTPVARLEPVLVAGVMVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +++GDRV+++RAG+VIP+V+ ++ E DA+ + Sbjct: 355 NATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVV--ETGDDAREIA 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CPIC S D+ G++VA RCTGGL C AQ+ LKHFVSR A +I+G+G++ Sbjct: 402 FPTHCPICGS----DIERVEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGEK 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D E ++ PA++F L + K+ + G S N+ +++ K + + Sbjct: 456 IIDQLVDKE----YVKNPAELFEL------TAGKLTGLDRMGPKSAQNVVNALAKAKQTT 505 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGI VG A +LA ++ + + A D +L+ V VG ++A Sbjct: 506 FARFLYALGISEVGEATAANLAAHFGTLE----------ALMTADLDALMAVQDVGKVVA 555 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F N + L+ + + + + S K +V TG+L + R + Sbjct: 556 SHVRNFLDEESNREIIRLLVDKAGVNWPQVVVVKAGEIDSPFAGKTVVLTGSLSILSRDE 615 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E++ + LL + Sbjct: 616 AKDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMIRLLGE 670 >gi|165923886|ref|ZP_02219718.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334] gi|165916671|gb|EDR35275.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334] Length = 670 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 260/711 (36%), Positives = 411/711 (57%), Gaps = 58/711 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L QEI+ H+ YY S+P I DS YD L + +P+ + P+ P + Sbjct: 8 QKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSSPTQR 64 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G E L +F+ V H IP LSL+ +++ + LR F RI + + K D + EPK+DG Sbjct: 65 VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 121 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV + + Sbjct: 122 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 181 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252 F N E G K +ANPRNAASG LR+L+P R L F+ + GL K + F K Sbjct: 182 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ +Q Sbjct: 241 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R+PRW I++KF ++ T + I+ Q+GRTG +TPVARLEPV++ G ++NAT Sbjct: 301 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D ++ R +D+RVGD V+V+RAG+VIP+VV I+ +R A+ PS Sbjct: 361 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + V++ G+ VA RC GGL C AQ E +KHF SR A +IEGLG + ++ Sbjct: 410 RCPVCHAEVIKP----EGEAVA--RCMGGLYCRAQLRESIKHFASRRALDIEGLGDKLVE 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F + ++ DI + + ++++ T + + G+ S NL +I K + +L R Sbjct: 464 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG AR+LA+++ E++ ++ + + +L + +G ++A+ I Sbjct: 514 FLYALGIRGVGDTTARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVVAENI 563 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668 F+ N + L+ +G H EK V SEI K V TG L+ + R +A+E Sbjct: 564 HAFFHQKHNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 619 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669 >gi|222099565|ref|YP_002534133.1| DNA ligase [Thermotoga neapolitana DSM 4359] gi|254781438|sp|B9K734|DNLJ_THENN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221571955|gb|ACM22767.1| DNA ligase [Thermotoga neapolitana DSM 4359] Length = 693 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 261/704 (37%), Positives = 396/704 (56%), Gaps = 51/704 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E+ L +EI YH+ YY + P+I D EYD L RR + +P+L P+ P ++ Sbjct: 17 EEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELERMYPELV---TPDSPTQRV 73 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ V HS+P LSL+ +N E++ +F R+ + Q ++ + + E KIDG Sbjct: 74 GGKVLEGFKTVKHSVPMLSLDNTYNEEEIIEFDKRVKKTLQ---ESEVEYVAELKIDGVS 130 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I +RYE G+FV A RGDG GEDVS ++ I ++P L L P IEVRGE+Y+ ++F Sbjct: 131 IALRYENGRFVLGATRGDGVEGEDVSENVKTIRSVP--LRLRKPLTIEVRGEIYMPVDEF 188 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257 LN+E G P+ANPRNAA+G LR+LN + +R L+ F++ + K Q+E Sbjct: 189 KRLNEEREEEGLPPFANPRNAAAGTLRQLNTALVASRRLDSFIYYVVHPENYGLKTQWEA 248 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ ++ +GF VN R ++ Y+ E K + L Y +DG+V KV+ F QK LGE Sbjct: 249 LQFLKEIGFKVNPHSRLCKNIQEVIEYWREWKERKRELDYWVDGVVVKVNRFDFQKVLGE 308 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +++PRW I+ KF +QA TR+LD+ IQ+GRTG+LTPVA LEPV + G ++ A+LHN + Sbjct: 309 TSKAPRWAIAFKFPAEQARTRILDVTIQVGRTGVLTPVAELEPVQLAGTIVKRASLHNFE 368 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI+ +DIR+GD V V++AG +IP++V I R + P CP+C Sbjct: 369 YIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGSEKEIKPPQSCPVC 417 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +V + L+P A RC C A+ L+ FVSR+A +IEGLG++ +D S Sbjct: 418 GGKVGK-LSPDE----VAIRCLNP-HCPAKLKRALRTFVSREALDIEGLGEKIIDRLVDS 471 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ ADIF L T + G G ++ + I + + L + I L Sbjct: 472 ----GLVKDIADIFYL-----TPFDLAQLGPGIGQRTIAKILQEIEEAKKRPLHKLITGL 522 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI VG + A+ LA+++ S + A+ + +L +P +G IA++IVE+++ Sbjct: 523 GIPMVGQKTAKILAEHFKSLEAIAEA----------SYETLKDIPGIGPEIARSIVEYFR 572 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQRHKAQEYVTQLGA 675 NP+ +E L K + EK V ++ K L F TGTL+ R + E++ +LGA Sbjct: 573 NPKTREIIEKLKK---AGVKLEEKTVKYDV-LKGLTFAVTGTLKNFTREEIIEFLERLGA 628 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V +S+ TD +IVG+NPGSK EKA+ L VK M+EE+FL ++ Sbjct: 629 RVVNSVSKNTDYLIVGENPGSKYEKAKALKVKTMSEEEFLRFVE 672 >gi|120598462|ref|YP_963036.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1] gi|166216244|sp|A1RII7|DNLJ_SHESW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120558555|gb|ABM24482.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1] Length = 685 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 255/718 (35%), Positives = 391/718 (54%), Gaps = 61/718 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A++ + +L Q ++ H+ YY P I DSEYD L + + FP ++ P Sbjct: 14 MSPENAQQVMQALSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVADSP 73 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++GG ++TH P LSL+ + D F R+ + F E Sbjct: 74 T---QRVGGLALAKFDQITHLKPMLSLDNAFGEADFSAFHKRV-----TDKVGEVSFCCE 125 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVRGE Sbjct: 126 PKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRGE 185 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KT 246 ++ K F ALN+ A K + NPRNAA+G LR+L+ +R L F+ + LG Sbjct: 186 AFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPD 245 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S K YE LQ+++ G PV+N ++ + YY ++ + RS LP++IDG+V KV Sbjct: 246 SYSLGKTHYEQLQQLKSWGLPVSNEIKVCEELDQVFDYYKDILTRRSDLPFEIDGVVMKV 305 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ + Q++LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +GG Sbjct: 306 NDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGV 365 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I+ L I++GD V+++RAG+VIP++V I+ R A Sbjct: 366 TVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPETAT 414 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP CP+C S V R G+ VA RC+GGL C AQ+ E +KHF SR A +I+G+ Sbjct: 415 DIVFPHNCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDIDGM 468 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E ++ PAD+F L T ++ G S TNL +I + Sbjct: 469 GDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIEAAK 518 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RF+++LGIR VG A +LA ++ S A + + L V VG Sbjct: 519 TTTLARFLYALGIREVGEATAANLAAHFASLD--ALRVATV--------EQLTAVEDVGV 568 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGTLQK 660 ++AQ + F+ P N+ ++AL+ + G H + + ++ + V TGTL + Sbjct: 569 VVAQHVAHFFAQPHNLEVIDALI-----AAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQ 623 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R+ A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+++EE L L Sbjct: 624 LNRNDAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLALF 681 >gi|319426762|gb|ADV54836.1| DNA ligase, NAD-dependent [Shewanella putrefaciens 200] Length = 685 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/718 (35%), Positives = 392/718 (54%), Gaps = 61/718 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A++ + +L Q ++ H+ YY P I DSEYD L + + FP ++ P Sbjct: 14 MSPENAQQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQCLIKLEAQFPQFIVADSP 73 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++GG + ++TH P LSL+ + D F R+ + F E Sbjct: 74 T---QRVGGLALVKFDQITHLKPMLSLDNAFGEADFSAFHKRV-----TDKVGEVSFCCE 125 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVRGE Sbjct: 126 PKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRGE 185 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--- 246 ++ K F ALN+ A K + NPRNAA+G LR+L+ +R L F+ + LG Sbjct: 186 AFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPD 245 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S K YE LQ+++ G PV+N ++ + YY ++ + RS LP++IDG+V KV Sbjct: 246 SYSLGKTHYEQLQQLKSWGLPVSNEIKVCEELDQVFDYYKDILTRRSDLPFEIDGVVMKV 305 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ + Q++LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +GG Sbjct: 306 NDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGV 365 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I+ L I++GD V+++RAG+VIP++V I+ R A Sbjct: 366 TVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPETAT 414 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP CP+C S V R G+ VA RC+GGL C AQ+ E +KHF SR A +I+G+ Sbjct: 415 DIVFPHNCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDIDGM 468 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E ++ PAD+F L T ++ G S TNL +I + Sbjct: 469 GDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIEAAK 518 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RF+++LGIR VG A +LA ++ S A + + L V VG Sbjct: 519 TTTLARFLYALGIREVGEATAANLAAHFASLD--ALRVATV--------EQLTAVEDVGV 568 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGTLQK 660 ++AQ + F+ P N+ ++AL+ + G H + + ++ + V TGTL + Sbjct: 569 VVAQHVAHFFAQPHNLEVIDALI-----AAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQ 623 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R+ A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+++EE L L Sbjct: 624 LNRNDAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLALF 681 >gi|215918993|ref|NP_819574.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493] gi|218512010|sp|Q83DZ6|DNLJ_COXBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206583878|gb|AAO90088.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493] Length = 673 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 260/711 (36%), Positives = 411/711 (57%), Gaps = 58/711 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L QEI+ H+ YY S+P I DS YD L + + +P+ + P+ P + Sbjct: 11 QKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPE---TITPSSPTQR 67 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G E L +F+ V H IP LSL+ +++ + LR F RI + + K D + EPK+DG Sbjct: 68 VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 124 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV + + Sbjct: 125 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 184 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252 F N E G K +ANPRNAASG LR+L+P R L F+ + GL K + F K Sbjct: 185 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 243 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ +Q Sbjct: 244 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 303 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R+PRW I++KF ++ T + I+ Q+GRTG +TPVARLEPV++ G ++NAT Sbjct: 304 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNAT 363 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D ++ R +D+RVGD V+V+RAG+VIP+VV I+ +R A+ PS Sbjct: 364 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 412 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + V++ G+ VA RC GGL C AQ E +KHF SR A +IEGLG + ++ Sbjct: 413 RCPVCHAEVIKP----EGEAVA--RCVGGLYCRAQLRESIKHFASRRALDIEGLGDKLVE 466 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F + ++ DI + + ++++ T + + G+ S NL +I K + +L R Sbjct: 467 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 516 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG AR+LA+++ E++ ++ + + +L + +G + A+ I Sbjct: 517 FLYALGIRGVGDTTARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVAAENI 566 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668 F+ N + L+ +G H EK V SEI K V TG L+ + R +A+E Sbjct: 567 HAFFHQKNNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 622 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672 >gi|315127017|ref|YP_004069020.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913] gi|315015531|gb|ADT68869.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913] Length = 673 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 398/712 (55%), Gaps = 54/712 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++++ L + H+ YY P I D+EYD L R + P+ ++ P K+ Sbjct: 7 EQINHLRTTLEQHNYSYYVLDTPSIPDAEYDRLLRTLSELETQHPEFLTADSPT---QKV 63 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG +V H +P LSL+ + ++ F RI ++ + F EPK+DG Sbjct: 64 GGAALAKFEQVAHQVPMLSLDNAFGEDEFSGFNRRIKERLMSTEE--LTFCCEPKLDGLA 121 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 ++I Y G V AA RGDG +GE+++ ++ I +P ++ + P +EVRGEV++ Sbjct: 122 VSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDDYPRELEVRGEVFMDSAG 181 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE-IFAKGQ 254 F LN E G K + NPRNAA+G LR+L+ + IT R L F+ + G ++ + Sbjct: 182 FEKLNAEAEKRGDKVFVNPRNAAAGSLRQLD-SKITAKRPLMFYAYSTGLVADGTLPEDH 240 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 Y+ L K+ G P+ + ++YYN++ + RS L Y+IDG+V KV++ +LQ++ Sbjct: 241 YQQLAKLTDWGLPLCPETKLVEGPKAALAYYNDILTRRSELKYEIDGVVIKVNKKALQER 300 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW I++KF ++ T+LLD++ Q+GRTG +TPVARLEPV +GG ++NATLH Sbjct: 301 LGFVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLH 360 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L ++VGD V+++RAG+VIP++ +++ +R DA+ FP+ C Sbjct: 361 NADEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLEQRPSDAKEIVFPTMC 409 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC S + R G+ VA RCTGGL C AQ+ + +KHF SR A +I+GLG + +D Sbjct: 410 PICDSHIER----VEGEAVA--RCTGGLVCQAQRKQAIKHFASRKALDIDGLGDKIVDQL 463 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E I+ PAD+F L++ E++ G S NL +++ + +L +F+ Sbjct: 464 VDRE----LIKTPADLFILKQGH------FESLERMGPKSAKNLVAALDDAKTTTLAKFL 513 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +SLGIR VG A++LA ++L+ +N I+ I LI V VG+I+A+ + Sbjct: 514 YSLGIREVGEATAQNLANHFLTLENV---IDASIEQ-------LIEVSDVGEIVAKHVRG 563 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK----KLVFTGTLQKIQRHKAQEYV 670 F+ N+ V L ++ I + SE E V TGTL + R+ A+ + Sbjct: 564 FFTEEHNLTVVNEL---IAQGINWPQLTAPSEQEQPLAGLTYVLTGTLNTLNRNDAKARL 620 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 QLGA VS +S KTD ++ G+ GSKL KAQ+LG++I+ E+ + LL+ +N Sbjct: 621 QQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQELGIEILTEDDLITLLETHN 672 >gi|28897574|ref|NP_797179.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus RIMD 2210633] gi|260878266|ref|ZP_05890621.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034] gi|260895418|ref|ZP_05903914.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466] gi|260903353|ref|ZP_05911748.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037] gi|81728289|sp|Q87RJ4|DNLJ_VIBPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28805786|dbj|BAC59063.1| DNA ligase [Vibrio parahaemolyticus RIMD 2210633] gi|308088617|gb|EFO38312.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466] gi|308090169|gb|EFO39864.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034] gi|308107994|gb|EFO45534.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037] Length = 670 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 252/710 (35%), Positives = 396/710 (55%), Gaps = 49/710 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + L L++ + YH YY P I D+EYD L R I PDL + P+ Sbjct: 3 ESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPS-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPK 133 ++GG+ +VTH +P LSL+ ++ +L F R + SI + EPK Sbjct: 61 -QRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQ---DRIGGESIKQYCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++ +R I IP ++ + P +EVRGEV+ Sbjct: 117 LDGLAVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-F 250 + K F LN+ G K + NPRNAA+G LR+L+ +R L+F+ + +G Sbjct: 177 MPKAGFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A YE +++ G P+ ++ ++ + +YY + R LPY+IDG+V K+D+ + Sbjct: 237 AASHYERFLQIKSWGLPMCPETKRVDSLADVKTYYQHILQRRDALPYEIDGVVIKIDDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q++LG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 297 VQERLGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV +I R A+ F Sbjct: 357 ATLHNADEIERL-----------QVKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R G+ V RCTGGL C AQ+ + LKHFVSR A +++GLG + Sbjct: 406 PTQCPVCGSHVER----IEGEAVT--RCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKV 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L S + + G S N+ +++ K + +L Sbjct: 460 IEQLVDRE----MVETPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF++SLGIR VG A +LA+++ S + LI V +G ++A+ Sbjct: 510 PRFLYSLGIREVGEATAANLAQHFKSLEAIQAATEE----------QLIAVQDIGVVVAK 559 Query: 611 AIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I F++ +N V+ LL + P + E+ +E K +V TGTL ++ R +A+E Sbjct: 560 HITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEAKE 619 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 620 ALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELI 669 >gi|146293460|ref|YP_001183884.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32] gi|166216243|sp|A4Y802|DNLJ_SHEPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145565150|gb|ABP76085.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32] Length = 685 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/718 (35%), Positives = 392/718 (54%), Gaps = 61/718 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A++ + +L Q ++ H+ YY P I DSEYD L + + FP ++ P Sbjct: 14 MSPENAQQVMQALSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVADSP 73 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++GG ++TH P LSL+ + D F R+ + F E Sbjct: 74 T---QRVGGLALAKFDQITHLKPMLSLDNAFGEADFSAFHKRV-----TDKVGEVSFCCE 125 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 PK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVRGE Sbjct: 126 PKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRGE 185 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KT 246 ++ K F ALN+ A K + NPRNAA+G LR+L+ +R L F+ + LG Sbjct: 186 AFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPD 245 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S K YE LQ+++ G PV+N ++ + + YY ++ + RS LP++IDG+V KV Sbjct: 246 SYSLGKTHYEQLQQLKSWGLPVSNEIKVCDELDQVFDYYKDILTRRSDLPFEIDGVVMKV 305 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ + Q++LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +GG Sbjct: 306 NDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGV 365 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I+ L I++GD V+++RAG+VIP++V I+ R A Sbjct: 366 TVSNATLHNADEIERL-----------GIKIGDTVIIRRAGDVIPQIVAIVPERRPETAT 414 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP CP+C S V R G+ VA RC+GGL C AQ+ E +KHF SR A +I+G+ Sbjct: 415 NIVFPHNCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDIDGM 468 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E ++ PAD+F L T ++ G S TNL +I + Sbjct: 469 GDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIEAAK 518 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RF+++LGIR VG A +LA ++ S A + + L V VG Sbjct: 519 TTTLARFLYALGIREVGEATAANLAAHFASLD--ALRVATV--------EQLTAVEDVGV 568 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGTLQK 660 ++AQ + F+ P N+ ++AL+ + G H + + ++ + V TGTL + Sbjct: 569 VVAQHVAHFFAQPHNLEVIDALI-----AAGVHWPAIEAPSADAQPLKGQTWVLTGTLNQ 623 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R+ A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+++EE L L Sbjct: 624 LNRNDAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLALF 681 >gi|227498670|ref|ZP_03928814.1| DNA ligase [Acidaminococcus sp. D21] gi|226904126|gb|EEH90044.1| DNA ligase [Acidaminococcus sp. D21] Length = 674 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 263/720 (36%), Positives = 397/720 (55%), Gaps = 63/720 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++A + +L +E+ + YY P I D+EYD+L R+ AI +P+L P Sbjct: 1 MTKQEALLKAQALRKELERNSYLYYVEDMPTITDAEYDSLMRQLRAIEAEYPELV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +GG +V H P LSL ++ E++++F R++ K D + + +E Sbjct: 58 DSPTQHVGGYAKPGFTEVHHITPLLSLANAFSPEEMKEFDRRVHEGLPK--DAKVEYVVE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEV 187 PKIDG +I YE G+FV AA RGDG GE+V+ +R I IP+VLS + IPE+++V Sbjct: 116 PKIDGLACSIIYENGRFVRAATRGDGMVGENVTENVRTIKNIPKVLSSLPGVPIPELLDV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGEVY+ ++ FL LN+E + G +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 RGEVYMPRHAFLKLNEERVERGETEFANPRNAAAGSLRQLDPRVTARRSLAFFAYGIGTG 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + + + ++ GF G + T + R +L YD DG+V KV Sbjct: 236 A---LDTHNDSMDRLEAYGFTTTEGRTKVATIEEANALIARHGERRKSLGYDTDGVVVKV 292 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + Q LG + PRW +++KF +QA T L DI IQ+GRTG+LTP A L+PV + G+ Sbjct: 293 NAVWQQNILGATGKDPRWAMAYKFPPEQAETTLRDIVIQVGRTGVLTPTAVLDPVKLSGS 352 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I+ ATLHNED+I +DIR+GDRV++ +A E+IP+V+ + V +R + + Sbjct: 353 TISRATLHNEDFI-----------AEKDIRIGDRVIINKAAEIIPEVLRVAVEKRTGEEK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P+ CP C VVR K G+ AA RCT C A E L HF SRDA NI+G Sbjct: 402 VFHMPAECPECGWPVVR----KNGE--AAVRCTNP-HCPALGREGLIHFTSRDAMNIDGC 454 Query: 487 GKQ---QLDFFFKSEDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G QL +DP+ + A D+ L R G S NL +I Sbjct: 455 GPAVLLQLQERNLVKDPSDLYLVTADDLMELDR--------------MGAKSANNLVRAI 500 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + SL++ +F+LGIRHVGA++AR+LA Y Q ++ ++ ++ L ++P Sbjct: 501 AASKENSLDKLLFALGIRHVGAKVARTLAMKY-------QTMDALMEATQEE---LAQIP 550 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQ 659 +G +IA+++V ++ +P N +E LKE+ + +G N + K +VFTGTL Sbjct: 551 DIGPVIAESVVTYFGDPGNQDYIER-LKELGLNMKMLGTAASNENHPFYGKTMVFTGTLP 609 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R AQ ++GA V++ +S+KTD ++ G +PGSK KAQ LGV I++E F LL+ Sbjct: 610 TLDRATAQTMAQEVGAKVTSSVSKKTDYVVAGADPGSKYTKAQSLGVTILDEAAFRRLLE 669 >gi|148826285|ref|YP_001291038.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittEE] gi|166215778|sp|A5UD04|DNLJ_HAEIE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148716445|gb|ABQ98655.1| DNA ligase [Haemophilus influenzae PittEE] Length = 670 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 261/715 (36%), Positives = 410/715 (57%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 5 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 62 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKQLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G AA RGDG GED++A IR I +P ++L+ N P +EVRGE Sbjct: 115 PKLDGLAVSILYVNGVLTQAATRGDGTIGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYQDIQNKRSSLGYDIDGTVLKIN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW ++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 294 DIALQNELGFISKAPRWATAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ + Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GTKSAENALNSLENAK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFIF+LGIR VG A +LA ++ + A + + L +VP VG+ Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665 >gi|121611375|ref|YP_999182.1| DNA ligase [Verminephrobacter eiseniae EF01-2] gi|166216275|sp|A1WRA7|DNLJ_VEREI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|121556015|gb|ABM60164.1| DNA ligase, NAD-dependent [Verminephrobacter eiseniae EF01-2] Length = 693 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 259/714 (36%), Positives = 386/714 (54%), Gaps = 52/714 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QA + +L +++ + Y+ P + D+EYD + A+ A P L P+ P Sbjct: 18 QADARIRALREQLVHWAHQYHVLDAPSVPDAEYDRAFQALQALEAAHPALI---TPDSPT 74 Query: 76 NKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEP 132 ++ G + L V H++P LS+ E + F R+ R D D +I + +EP Sbjct: 75 RRVQGAVLQGLTPVRHALPMLSIQTETDTGAGGAQAFDARVRRELGLTDADPAIEYVVEP 134 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K DG + +RYE + V AA RGDG GEDV+ IR I IP L + P ++EVRGEVY Sbjct: 135 KFDGLAMGLRYENRRLVQAATRGDGEIGEDVTHNIRTIRQIPLGLPDDAPALLEVRGEVY 194 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + + DF ALN A K + NPRNAA+G +R+L+ +IT R L FF +GLG + Sbjct: 195 MRRADFDALNQRQRAQSGKTFVNPRNAAAGAVRQLD-ANITAQRPLRFFAYGLGAVTAPG 253 Query: 251 AKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 G Y +LQ ++ GFPV V A+ + + + ++ + R LPYDIDG+VYK Sbjct: 254 EGGPAWRTHYALLQTLKSWGFPVAEQVGIAHGASQLAALHEQIGARRDALPYDIDGVVYK 313 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ LQ+ LG + R PRW ++HK+ ++ TR+ I++Q+GRTG LTPVARL PV +GG Sbjct: 314 VNALQLQRDLGFKTREPRWAVAHKYPAQEMPTRVEGIELQVGRTGKLTPVARLAPVFVGG 373 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +TNATLHN I+ + +RVGD V V+RAG+VIP+VV ++ +R Sbjct: 374 VTVTNATLHNLFEIR-----------KKQVRVGDTVTVRRAGDVIPEVVGVLPGQRSAYV 422 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 F P+ CP+C S VVR+ K A HRCTGGL C+AQ+ E L HF +R A +IEG Sbjct: 423 ANFRMPAHCPVCGSAVVRE------KGEANHRCTGGLFCAAQRKEALLHFAARRALDIEG 476 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + +D +E +R D++ L + + + S NL D++ K Sbjct: 477 LGDKLVDQLVDAE----LVRGLPDLYRL------DLVALSALDRMAEKSAQNLLDALEKS 526 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R +L RF+F LG+RHVG A+ LA+++ + A N L++V +G Sbjct: 527 RQTTLPRFLFGLGLRHVGEATAKDLARHF----------GTLDAIMNASVEQLLQVSDIG 576 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 ++AQ++ F+Q P N V L + G + + + K +V TGTL + R Sbjct: 577 PVVAQSLHCFFQQPHNREVVAQLRACGLRWPEGAPPERPAQRLAGKSVVLTGTLPTLGRD 636 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A++ + GA V+ +S+KT +I G GSKL KA++LG+ +++E L LL Sbjct: 637 AARDLLEAAGAKVTGSVSKKTSYLIAGAEAGSKLAKARELGIPVLDEAGMLALL 690 >gi|120611505|ref|YP_971183.1| DNA ligase [Acidovorax citrulli AAC00-1] gi|166215380|sp|A1TR21|DNLJ_ACIAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120589969|gb|ABM33409.1| DNA ligase, NAD-dependent [Acidovorax citrulli AAC00-1] Length = 732 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 264/747 (35%), Positives = 389/747 (52%), Gaps = 89/747 (11%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 ++L ++ YY P + D+EYD + + A+ A P+L P+ P ++ G Sbjct: 24 AALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQALQALETAHPELV---TPDSPTQRVIGA 80 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQ-KKDDNSIFFTLEPKIDGTM 138 + L V H++P LS+ + E F R+ R + D + + EPK DG Sbjct: 81 VMEGLTPVRHTVPMLSIRTETDTEASGAETFDARVRRELKLAPDAPPVEYVAEPKFDGLA 140 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYIS 194 +++RYE G+ V AA RGDG GEDV+ IR I IP L +P ++EVRGEVY+ Sbjct: 141 MSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLPTGGRYGVPPVLEVRGEVYMR 200 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 + DF LN+ G K + NPRNAA+G +R+L+ R L+FF +GLG + G Sbjct: 201 RADFDRLNERQREAGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLGDITPAAEGG 260 Query: 254 -----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ML++++ GFPV VR A +V+++ E+ + R LPYDIDG+VYKV+ Sbjct: 261 PDFATHFDMLRQLKAWGFPVAAQVRTARGASELVAFHQEVGASRDQLPYDIDGVVYKVNS 320 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG R PRW ++HK+ ++ TR+ ID+Q+GRTG LTPVARL PV +GG + Sbjct: 321 LALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPVFVGGVTV 380 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP- 427 TNATLHN I+ + +RVGD+V+V+RAG+VIP+VV + P A Sbjct: 381 TNATLHNLFEIR-----------KKGVRVGDQVIVRRAGDVIPEVVGTVPAALLPVAGAL 429 Query: 428 ----------------------------------FSFPSFCPICQSRVVRDLNPKTGKLV 453 F P CPIC S VVR+ K Sbjct: 430 QGSDALADAASGADGTAPGADAARAAPRSPYVPNFRMPRQCPICGSTVVRE------KGE 483 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A HRCTGGL C AQ+ E L HF R A +IEGLG++ +D + + IR D++ L Sbjct: 484 ANHRCTGGLFCPAQRKEALLHFAQRRAMDIEGLGEKLVDQLVEGQ----VIRTLPDLYRL 539 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 T + ++ + S N+ ++ K ++ +L RF+F LGIRHVG A+ LA++ Sbjct: 540 ------GLTALSSLDRMAEKSAQNVLAALEKSKHTTLPRFLFGLGIRHVGEATAKDLARH 593 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EV 632 + + A + L+ V VG ++A+AI F+ P N VE L V Sbjct: 594 F----------GGLDAIMDASVEQLLEVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGV 643 Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + G + + + K V TGTL + R A++ + GA V+ +SRKT ++ G+ Sbjct: 644 TWKEGPPAERATLPLAGKTFVLTGTLPTLSREDAKDRLEAAGAKVAGSVSRKTHYVVAGE 703 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSKL KAQ+LGV +++E L LLQ Sbjct: 704 EAGSKLAKAQELGVPVLDEAGMLALLQ 730 >gi|291613759|ref|YP_003523916.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1] gi|291583871|gb|ADE11529.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1] Length = 701 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 259/725 (35%), Positives = 407/725 (56%), Gaps = 66/725 (9%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++I+ +D YY P I D+EYD L R A+ P+L S+ P ++GG+ Sbjct: 13 LRKQIAEYDYWYYVKDMPRIPDAEYDKLFRELQALEAQHPELLASDSPT---QRVGGK-P 68 Query: 84 LSLFK-VTHSIPTLSLEKIWNIEDLRK--FITRIYR-FWQKKDDNSIFFTLEPKIDGTMI 139 L +F+ V H++P LS+ +I D F R+ R ++D I + E K DG + Sbjct: 69 LDMFQPVRHAVPMLSIRTETDISDQGAIAFDARVRRELGLNENDPPIEYVCELKFDGLAL 128 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +RYE+G+ V AA RGDG +GEDV+ +R I IP L P ++EVRGEVY+++ DF Sbjct: 129 NLRYEQGRLVQAATRGDGETGEDVTQNVRTIHQIPLSLEGMCPGVLEVRGEVYMARPDFE 188 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE--IFAKGQYE 256 N+ G NPRN A+G +R+L+P R L FF +GLG+ E + + Sbjct: 189 RYNERQRQQGLPTLVNPRNGAAGSIRQLDPALAARRPLKFFAYGLGEKVEGWDWRETHKG 248 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L ++ GFPV++ R + G+V ++ ++++R +LP+DIDG+VYKV+ +LQ++LG Sbjct: 249 VLDQLEAWGFPVSHECRVVHGAQGLVEFHRRIEAMRDSLPFDIDGVVYKVNSIALQEKLG 308 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R PRW ++HKF ++ TRL I+IQ+GRTG LTPVA+LEPV +GG ++NATLHNE Sbjct: 309 FVSREPRWAVAHKFPAEEQVTRLNGIEIQVGRTGKLTPVAKLEPVFVGGTTVSNATLHNE 368 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII------------------V 418 G++ R G I +GD V+V+RAG+VIP+VV ++ + Sbjct: 369 ---------GEIRRKG--IHIGDMVIVRRAGDVIPEVVGVVPTMKVEPTIPPSNTINLEL 417 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 P F P+ CP+C S VVR+ A RCTGGL C+AQ+ + + HF R Sbjct: 418 TAPSPTLSAFMMPTSCPVCGSHVVREEGE------ADARCTGGLFCAAQRKQAILHFAGR 471 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +IEGLG + +D E+ S+ +D++ + + ++ + + S N+ Sbjct: 472 RAMDIEGLGDKLVDQLV-DENIIHSL---SDLYDEKVLNSQTLAALDRM---AEKSAQNI 524 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 D++ K ++ +L RF+F+LGIRHVG A+ LA+++ ++ I+ N + L Sbjct: 525 VDALEKSKSTALNRFLFALGIRHVGESTAKDLARHF-------GKLEAIMQANVE---QL 574 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTG 656 + VP VG ++AQ+IV+F+ N V+ L+ + HE + E + K V TG Sbjct: 575 LAVPDVGPVVAQSIVDFFGEAHNREVVQQ-LRILGVHWAEHEGSSVRELPLSGKTFVLTG 633 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL + R +A+ + LGA V+ +S+KTD ++ G GSKL+KA++L V + +E+Q Sbjct: 634 TLANLSRDEAKSRLEALGAKVAGSVSKKTDCVVAGVEAGSKLDKARELNVPVWDEQQLFD 693 Query: 717 LLQQY 721 L++Y Sbjct: 694 QLKEY 698 >gi|307546309|ref|YP_003898788.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581] gi|307218333|emb|CBV43603.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581] Length = 700 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 244/712 (34%), Positives = 393/712 (55%), Gaps = 56/712 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E + L E+ + YY +P + D++YD RR I +P+L R P+ P ++G Sbjct: 29 EAARLRAELDDANHRYYVLDEPRMTDADYDRKLRRLQEIETEYPELVR---PDSPTQRVG 85 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 ++ H++P LSL+ ++ ++L F+ R+ + D SI F EPK+DG + Sbjct: 86 AAPADGFPEIEHAVPMLSLDNAFDEDELAAFVKRVADRLEI-DGESIAFCCEPKLDGAAV 144 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198 ++ YE+G+ RGDG +GE +++ +R + +IP ++ + P+++EVRGEV + DF Sbjct: 145 SLVYERGELTAGVTRGDGRTGEGITSNLRTLKSIPLKLRGRHWPDVLEVRGEVTMRHADF 204 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP--TDITRYLNFFVHGLGKTSEIFAKGQYE 256 A+ND+ G K +ANPRNAA+G LR+L+P TD R L F + + + Sbjct: 205 EAMNDKAREEGGKVFANPRNAAAGSLRQLDPRITD-QRPLEFSAYQAARIEPDAGDASHS 263 Query: 257 -MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++ ++ GF + +R G++ Y + R L YDIDG+V KVD+ LQ++L Sbjct: 264 ALMARLSEFGFRTSAELRVVRGTEGVIEYCRALGEKRDALGYDIDGVVIKVDDLRLQREL 323 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G AR+PRW I+ KF ++ TRL D++ Q+GRTG +TPVARLEPV++ G ++NATLHN Sbjct: 324 GFVARAPRWAIAFKFPAQEQVTRLNDVEFQVGRTGAITPVARLEPVSVAGVTVSNATLHN 383 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I L + +GD V ++RAG+VIP+VV + +R DA+ FP CP Sbjct: 384 ADEIARL-----------GVMIGDTVAIRRAGDVIPQVVRVQEEDRPDDAREIVFPERCP 432 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S++ R + A RC+GGL C+AQ+ E LKHF SR A +IEGLG++ +D Sbjct: 433 VCDSQIERLEDE------AVARCSGGLYCAAQRKEALKHFASRRALDIEGLGEKLIDQLV 486 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + + ++ PAD+F L+ ++ + G+ S NL ++ K + +L RFIF Sbjct: 487 ELD----WVQTPADLFALE------AERLATLPRMGEKSSQNLVTALEKAKATTLPRFIF 536 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A +LA+++ + + + + +D VG I+A + F Sbjct: 537 ALGIREVGEATAANLARHFGTLEALMDAERDALEQVDD----------VGPIVAAHVHTF 586 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-----ENKKLVFTGTLQKIQRHKAQEYV 670 ++ P N + AL + G H + EI E + V TGT++ + R + + + Sbjct: 587 FRQPHNRDTIAALRQ-----AGVHWEEAEVEIGPTLLEGQSWVLTGTMESMTRDEGKARL 641 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S+KT ++ G+ GSKL KA+QLGV++++E FL L+ + Sbjct: 642 QALGAKVAGSVSKKTACLVAGEAAGSKLTKAEQLGVEVIDEATFLERLEAWE 693 >gi|329897281|ref|ZP_08272019.1| DNA ligase [gamma proteobacterium IMCC3088] gi|328921277|gb|EGG28673.1| DNA ligase [gamma proteobacterium IMCC3088] Length = 674 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 262/713 (36%), Positives = 394/713 (55%), Gaps = 68/713 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K ++ L I + YY++ P I D+EYD L R + P AR + P ++ Sbjct: 7 KRIAELIALIERYSQEYYEHDAPSISDAEYDQLFRELQTLEVQNPQYARRDSPT---QRV 63 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG+ V H IP LSL+ ++ ++L F R + +I + EPK+DG Sbjct: 64 GGKPVEGFAPVMHVIPMLSLDNAFSNDELLDFDRRARERLGLLETATIDYVCEPKLDGIA 123 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII---EVRGEVYISK 195 + IRYE+G V AA RGDG +GED++ ++ + IP L L+ E I EVRGE+++ K Sbjct: 124 VAIRYERGMLVQAATRGDGQTGEDITHNVKTVKNIP--LQLHGAESIDALEVRGEIFMPK 181 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI-FAKG 253 F LN A G K +ANPRNAA+G LR+L+P R L F+ +G+G T + Sbjct: 182 RGFTRLNQRAEAQGEKTFANPRNAAAGSLRQLDPAITAKRPLAFYCYGVGVTQGVDIPDS 241 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 QY +L+ LG PVN+ V+ + + YY ++ RS L YDIDG+VYKV+ + Q Sbjct: 242 QYGLLRWYESLGLPVNDEVQAVSGIQACIDYYEQLSRRRSGLDYDIDGIVYKVNSLAEQA 301 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG +R+PRW I+ KF ++A T LLD++ Q+GRTG +TPVARLEPV++GG +++NATL Sbjct: 302 DLGFVSRAPRWAIARKFPAEEALTHLLDVEFQVGRTGAITPVARLEPVSVGGVVVSNATL 361 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I L +++GD V+V+RAG+VIP+V + ER + + FPS Sbjct: 362 HNADEIDRL-----------QVKIGDLVVVRRAGDVIPQVARALPEERRGELRKIVFPSH 410 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S +VR+ A RC+G L CSAQ+ + HFVSR A +IEG G++ ++ Sbjct: 411 CPVCGSAIVREEGE------AVQRCSGALTCSAQRKGAIIHFVSRKAMDIEGFGEKLVEQ 464 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E ++ P+DI+ L + + ++ G S NL D+I++ + + RF Sbjct: 465 LVDIE----RLKDPSDIYGLTFNELAALPRM------GAKSAQNLIDAIDRSKRTTFARF 514 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A LA Y+ +I ++IA + DD L+ VP VG I+A I Sbjct: 515 LYALGIREVGVTTAERLADYF-------GDIESLIAASVDD---LLAVPDVGPIVANHIR 564 Query: 614 EFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQ 662 F + ++ + L++ EV+P +++N L V TG L+ Sbjct: 565 SFLNSSTHLEVISTLVQAGLSWPEVAP----------IDVDNAPLVGQTWVVTGKLETFS 614 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A E + LGA V+ +S KT +++ G GSKL KAQ LGV+++NE++FL Sbjct: 615 REEATELLKSLGASVAGSVSNKTTVLLAGPGAGSKLAKAQALGVEVINEDEFL 667 >gi|145633173|ref|ZP_01788905.1| DNA ligase [Haemophilus influenzae 3655] gi|144986399|gb|EDJ92978.1| DNA ligase [Haemophilus influenzae 3655] Length = 670 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 258/715 (36%), Positives = 410/715 (57%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 5 QTQLDNLRKTLRQYEYEYHVLDNPTVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 62 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G AA RGDG +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 115 PKLDGLAVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR---YLNFFVHGLGKTS 247 V++ F LN + K +ANPRNAA+G LR+L+P ++ LN + G+ + Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYSIGIAEGV 234 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 235 NL-PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 294 DIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ + Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GAKSAENALNSLENAK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFIF+LGIR VG A +LA ++ + A + + L +V VG+ Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVSDVGE 555 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665 >gi|153207803|ref|ZP_01946403.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177'] gi|120576355|gb|EAX32979.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177'] Length = 670 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 259/711 (36%), Positives = 411/711 (57%), Gaps = 58/711 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L +EI+ H+ YY S+P I DS YD L + +P+ + P+ P + Sbjct: 8 QKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSSPTQR 64 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G E L +F+ V H IP LSL+ +++ + LR F RI + + K D + EPK+DG Sbjct: 65 VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 121 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV + + Sbjct: 122 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 181 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252 F N E G K +ANPRNAASG LR+L+P R L F+ + GL K + F K Sbjct: 182 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ +Q Sbjct: 241 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R+PRW I++KF ++ T + I+ Q+GRTG +TPVARLEPV++ G ++NAT Sbjct: 301 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D ++ R +D+RVGD V+V+RAG+VIP+VV I+ +R A+ PS Sbjct: 361 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + V++ G+ VA RC GGL C AQ E +KHF SR A +IEGLG + ++ Sbjct: 410 RCPVCHAEVIKP----EGEAVA--RCMGGLYCRAQLRESIKHFASRRALDIEGLGDKLVE 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F + ++ DI + + ++++ T + + G+ S NL +I K + +L R Sbjct: 464 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG AR+LA+++ E++ ++ + + +L + +G ++A+ I Sbjct: 514 FLYALGIRGVGDTTARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVVAENI 563 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668 F+ N + L+ +G H EK V SEI K V TG L+ + R +A+E Sbjct: 564 HAFFHQKHNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 619 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669 >gi|37525354|ref|NP_928698.1| NAD-dependent DNA ligase LigA [Photorhabdus luminescens subsp. laumondii TTO1] gi|81416713|sp|Q7MBH2|DNLJ_PHOLL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|36784781|emb|CAE13691.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 672 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 246/708 (34%), Positives = 404/708 (57%), Gaps = 51/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L + +H+ Y+ P I D+EYD L + + +P+L S+ P +I Sbjct: 6 QQIEKLRTTLRHHEYLYHVMDAPEIPDAEYDRLMQELQDLEEQYPELITSDSPT---QRI 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +V H IP LSL+ +++ E F R+ ++ D + E K+DG Sbjct: 63 GAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKETQD--LVVCCELKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G+ V AA RGDG +GE++++ IR I IP R+ NIP IE+RGEV++ + Sbjct: 121 VSLLYENGELVRAATRGDGTTGENITSNIRTIGAIPLRLFGENIPARIEIRGEVFMPQKG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQ 254 F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ A Sbjct: 181 FEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFFCYGVGILEGGELPAS-H 239 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE L + + G PV++ V+ ++ +Y+++ + RS L +DIDG+V K++ LQ+ Sbjct: 240 YERLIQFKKWGLPVSDKVKVCTDSQQVIDFYHDIVNQRSALGFDIDGVVVKINSLELQEI 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW + KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++NATLH Sbjct: 300 LGFVARAPRWATAFKFPAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVSGVIVSNATLH 359 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L +R+GD V+++RAG+VIP+VV ++ R D+ FP C Sbjct: 360 NADEIERL-----------GLRIGDTVIIRRAGDVIPQVVGVLEERRPQDSNVVVFPEHC 408 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C + D+ G+ VA RCTGGL C AQ+ E L+HFVSR A +++G+G++ +D Sbjct: 409 PVCGA----DIERIEGEAVA--RCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKIIDQL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E ++ PAD+F L + K+ + G S N+ D++ K + + RF+ Sbjct: 463 VDKE----YVKTPADLFRL------TAGKLTGLDRMGPKSAQNVVDALEKAKKTTFARFL 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG A +LA ++ E++ + + D +L V VG+++A+ +V Sbjct: 513 YALGIREVGEATAANLAAHF-------GELDKL---RSADEEALKEVQDVGEVVAKHVVN 562 Query: 615 FYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F+ P N ++ L+ ++ P + + + S K +V TG+L ++ R +A+ + Sbjct: 563 FFIEPHNQTVIDDLIDDIGINWEPVVVTRAEKIDSPFSGKTVVLTGSLHQLSRDEAKAKL 622 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V+ +S+KTD++I G+ GSKL KA +L + +++EE+ + LL Sbjct: 623 VALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIPVIDEEEMIRLL 670 >gi|212218835|ref|YP_002305622.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154] gi|254781301|sp|B6J878|DNLJ_COXB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212013097|gb|ACJ20477.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154] Length = 673 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 259/711 (36%), Positives = 411/711 (57%), Gaps = 58/711 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L +EI+ H+ YY S+P I DS YD L + +P+ + P+ P + Sbjct: 11 QKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSSPTQR 67 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G E L +F+ V H IP LSL+ +++ + LR F RI + + K D + EPK+DG Sbjct: 68 VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 124 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV + + Sbjct: 125 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 184 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252 F N E G K +ANPRNAASG LR+L+P R L F+ + GL K + F K Sbjct: 185 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 243 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ +Q Sbjct: 244 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 303 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R+PRW I++KF ++ T + I+ Q+GRTG +TPVARLEPV++ G ++NAT Sbjct: 304 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNAT 363 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D ++ R +D+RVGD V+V+RAG+VIP+VV I+ +R A+ PS Sbjct: 364 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 412 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + V++ G+ VA RC GGL C AQ E +KHF SR A +IEGLG + ++ Sbjct: 413 RCPVCHAEVIKP----EGEAVA--RCMGGLYCRAQLRESIKHFASRRALDIEGLGDKLVE 466 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F + ++ DI + + ++++ T + + G+ S NL +I K + +L R Sbjct: 467 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 516 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG AR+LA+++ E++ ++ + + +L + +G ++A+ I Sbjct: 517 FLYALGIRGVGDTTARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVVAENI 566 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668 F+ N + L+ +G H EK V SEI K V TG L+ + R +A+E Sbjct: 567 HAFFHQKHNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 622 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672 >gi|212212963|ref|YP_002303899.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212] gi|254781302|sp|B6J1C6|DNLJ_COXB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212011373|gb|ACJ18754.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212] Length = 677 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 260/711 (36%), Positives = 410/711 (57%), Gaps = 58/711 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L QEI+ H+ YY S+P I DS YD L + +P+ + P+ P + Sbjct: 11 QKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPE---TITPSSPTQR 67 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G E L +F+ V H IP LSL+ +++ + LR F RI + + K D + EPK+DG Sbjct: 68 VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 124 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV + + Sbjct: 125 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 184 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252 F N E G K +ANPRNAASG LR+L+P R L F+ + GL K + F K Sbjct: 185 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 243 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ +Q Sbjct: 244 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 303 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R+PRW I++KF ++ T + I+ Q+GRTG +TPVARLEPV++ G ++NAT Sbjct: 304 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNAT 363 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D ++ R +D+RVGD V+V+RAG+VIP+VV I+ +R A+ PS Sbjct: 364 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 412 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + V++ G+ VA RC GGL C AQ E +KHF SR A +IEGLG + ++ Sbjct: 413 RCPVCHAEVIKP----EGEAVA--RCVGGLYCRAQLRESIKHFASRRALDIEGLGDKLVE 466 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F + ++ DI + + ++++ T + + G+ S NL +I K + +L R Sbjct: 467 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 516 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG AR+LA+++ E++ ++ + + +L + +G + A+ I Sbjct: 517 FLYALGIRGVGDTTARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVAAENI 566 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668 F+ N + L+ +G H EK V SEI K V TG L+ + R +A+E Sbjct: 567 HAFFHQKHNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 622 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672 >gi|121587330|ref|ZP_01677101.1| DNA ligase [Vibrio cholerae 2740-80] gi|121730035|ref|ZP_01682446.1| DNA ligase [Vibrio cholerae V52] gi|147675693|ref|YP_001216443.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O395] gi|153818602|ref|ZP_01971269.1| DNA ligase [Vibrio cholerae NCTC 8457] gi|227081145|ref|YP_002809696.1| DNA ligase [Vibrio cholerae M66-2] gi|229505430|ref|ZP_04394940.1| DNA ligase [Vibrio cholerae BX 330286] gi|262167192|ref|ZP_06034905.1| DNA ligase [Vibrio cholerae RC27] gi|298498912|ref|ZP_07008719.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757] gi|190359299|sp|A5F2W3|DNLJ_VIBC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781449|sp|C3LTL9|DNLJ_VIBCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|121548413|gb|EAX58473.1| DNA ligase [Vibrio cholerae 2740-80] gi|121628224|gb|EAX60744.1| DNA ligase [Vibrio cholerae V52] gi|126510828|gb|EAZ73422.1| DNA ligase [Vibrio cholerae NCTC 8457] gi|146317576|gb|ABQ22115.1| DNA ligase [Vibrio cholerae O395] gi|227009033|gb|ACP05245.1| DNA ligase [Vibrio cholerae M66-2] gi|227012788|gb|ACP08998.1| DNA ligase [Vibrio cholerae O395] gi|229357653|gb|EEO22570.1| DNA ligase [Vibrio cholerae BX 330286] gi|262024413|gb|EEY43101.1| DNA ligase [Vibrio cholerae RC27] gi|297543245|gb|EFH79295.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757] Length = 669 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 250/708 (35%), Positives = 398/708 (56%), Gaps = 51/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L+ L + + H YY P I D+EYD L R + A P+L S+ P+ ++ Sbjct: 6 QRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + V H IP LSL+ ++ +L F R+ Q ++ F EPK+DG Sbjct: 63 GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHSA--FCCEPKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G AA RGDG +GE+++ +R I IP R+ + P +EVRGEV++ K Sbjct: 121 VSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253 F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + E+ A Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ +++ G P+ + + + ++Y ++ R L Y+IDG+V KVD+ LQ+ Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQLQE 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NATL Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ FP+ Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+CQS V R G+ VA RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L+ + T ++ G S N+ D++NK + +L +F Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A +LA+++LS + Q I VP VG ++A ++ Sbjct: 512 LYALGIREVGDATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLL 561 Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ + Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|198283038|ref|YP_002219359.1| NAD-dependent DNA ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666742|ref|YP_002425245.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC 23270] gi|254781244|sp|B7J653|DNLJ_ACIF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781245|sp|B5EP61|DNLJ_ACIF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|198247559|gb|ACH83152.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518955|gb|ACK79541.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC 23270] Length = 671 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 247/705 (35%), Positives = 390/705 (55%), Gaps = 48/705 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L E+ ++ YY+ P + D+EYDA R + P ++ P ++ Sbjct: 10 ERIQQLRAELVAANNAYYREDSPTLSDAEYDARLRELRTLEDRNPQWQSADSPT---QRV 66 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G +V ++IP SL+ +++ + ++ R+ + ++D + + EPK DG Sbjct: 67 GAAPVEVFGEVHYAIPLTSLDNVFDQDGFSDWLARVQKGLGRED---VPLSAEPKFDGLS 123 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197 + IRY +GK V A RGDG +GEDV+A +R I +P L+ + PE++EVRGEV I Sbjct: 124 VNIRYIEGKLVQAGTRGDGQTGEDVTANVRTIRNVPLQLTGKDWPELLEVRGEVVIPVAA 183 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E + G P+ANPRNAA+G LR+L+ + R L +F G G++S K Sbjct: 184 FRRLNGERLRAGDNPFANPRNAAAGSLRQLDSSVTAKRPLAYFPWGWGESSVPLGKSHIA 243 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +++++ GF V + +R + Y++EM+ IR +P++IDGLV+KVD+ ++QLG Sbjct: 244 VMERLSAWGFEVTSYLRGVHELTECQRYFSEMQKIREGMPFEIDGLVFKVDDLLAREQLG 303 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR+PRW I++KF + T + DI +GRTG++TPVA L+PV +GG ++ A+LHN+ Sbjct: 304 FTARAPRWAIAYKFPAHEERTVVEDILASVGRTGVITPVAVLKPVQVGGVTVSRASLHNQ 363 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + +DIRVGD VLV+RAG+VIP+VV +I ER P QP+ P CP+ Sbjct: 364 DEVD-----------RKDIRVGDTVLVRRAGDVIPEVVMVIKEERPPATQPWHMPQRCPV 412 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V+R N +AHRC GGL C AQ++ ++HF SR A +I GLG++ ++ Sbjct: 413 CGSEVLRLANE------SAHRCMGGLYCPAQRMGAIRHFASRRAMDIRGLGEKLVEQLVG 466 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + ADI+ L + + +E + S L I++ R+ SL RF+++ Sbjct: 467 HG----LVHTVADIYHL---DEAALCGLERM---ASRSAQKLLAEIDRSRHTSLPRFLYA 516 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A+SLA Y+ +++ ++A + L +P VG I+A+++ F+ Sbjct: 517 LGIRQVGEGTAKSLAIYF-------GDLDPLMAATPE---LLQNIPDVGPIVAESVAHFF 566 Query: 617 QNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 P N + AL V ++ + +K + LV TG L + R +A+ + G Sbjct: 567 AQPHNRDVIAALRAAGVQWAVVQPQKG--GRFQGMTLVLTGALDNMTREEAKTAIENAGG 624 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S KT ++VG +PGSK EKA +LGVK + E QFL + + Sbjct: 625 KVSGSVSAKTSYVVVGKDPGSKAEKAAKLGVKQLTEAQFLAMFSE 669 >gi|292488952|ref|YP_003531839.1| DNA ligase [Erwinia amylovora CFBP1430] gi|292900089|ref|YP_003539458.1| DNA ligase [Erwinia amylovora ATCC 49946] gi|291199937|emb|CBJ47061.1| DNA ligase [Erwinia amylovora ATCC 49946] gi|291554386|emb|CBA21816.1| DNA ligase [Erwinia amylovora CFBP1430] Length = 670 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 250/715 (34%), Positives = 409/715 (57%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + +++ L + +++ Y+ P + D+EYD L + +P+L S+ P Sbjct: 1 MESLQDKITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTSDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ ++ E F R+ + DD I F E K Sbjct: 60 --QRVGAAPLSAFGQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YEKG+ V AA RGDG +GED++A +R I IP LS + IPE +EVRGEV+ Sbjct: 116 LDGLAVSLLYEKGQLVRAATRGDGTTGEDITANVRTIRAIPLRLSGDSIPERLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + F +N + + G+K +ANPRNAA+G LR+L+P R L FF +GLG + E+ Sbjct: 176 MPLAGFEQMNQQARSCGQKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGLGLLEGGEM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + LQ+ + G PV++ VR +++ ++ +Y+++++ R TL +DIDG+V KVD Sbjct: 236 -PRSHMARLQQFKAWGLPVSDRVRLSHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+QLG AR+PRW I+ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 ELQEQLGFVARAPRWAIAFKFPAQEQITTVRDVEFQVGRTGAMTPVARLEPVLVAGVMVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +++GDRV+++RAG+VIP+V+ ++ E DA + Sbjct: 355 NATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVV--ETGDDALEIA 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CPIC S D+ G++VA RCTGGL C AQ+ LKHFVSR A +I+G+G++ Sbjct: 402 FPTHCPICGS----DIERVEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGEK 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D E ++ PA++F L + K+ + G S N+ +++ K + + Sbjct: 456 IIDQLVDKE----YVKNPAELFEL------TAGKLTGLDRMGPKSAQNVVNALAKAKQTT 505 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGI VG A +LA ++ + + A D +L+ V VG ++A Sbjct: 506 FARFLYALGISEVGEATAANLAAHFGTLE----------ALMTADLDALMAVQDVGKVVA 555 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F N + L+ + + + + S K +V TG+L + R + Sbjct: 556 SHVRNFLDEESNREIIRLLVDKAGVNWPQVVVVKAGEIDSPFAGKTVVLTGSLSILSRDE 615 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E++ + LL + Sbjct: 616 AKDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMIRLLGE 670 >gi|255318624|ref|ZP_05359855.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82] gi|255304306|gb|EET83492.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82] Length = 678 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 259/715 (36%), Positives = 393/715 (54%), Gaps = 55/715 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L Q I+ H+ YY +P I D+EYD+L + A+ +PDL +++ P ++G Sbjct: 10 QMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDTPT---RRVG 66 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G+ V H++P LSL ++N EDL F R+ ++ + + +E K+DG I Sbjct: 67 GQALSKFMSVRHAVPMLSLGNVFNKEDLFAFARRVE---ERLPGQQVKYEVELKLDGLAI 123 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISKN 196 ++ YE G+ V RGDG +GED++ ++ I +P+ L IP+++EVRGEV I K Sbjct: 124 SLWYENGELVRGVTRGDGETGEDITQNVKTIRNLPKYLYSDQAAIPKLLEVRGEVLIPKT 183 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS-EIFAKGQ 254 FL LN E A G K +ANPRNAA+G LR+L+P R L F+ +G+ + E Sbjct: 184 GFLKLNAENEAKGEKIFANPRNAAAGSLRQLDPGIAAARPLAFYAYGIAQCEPEHHLNSM 243 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L +R LGF + ++ + Y ++ R+ L +IDG+V KVD QKQ Sbjct: 244 TESLHWLRDLGFEIAERQFLCDSIEEVQRRYEKIMEERADLGVEIDGMVVKVDSLKQQKQ 303 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R PRW ++KF A T + +ID Q+GRTGILTPVARL PV +GG ++N TLH Sbjct: 304 LGFLSREPRWATAYKFPAIAALTTVENIDWQVGRTGILTPVARLNPVFVGGVTVSNVTLH 363 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I L D+R+GD V V R G+VIPKV + R A+ + P C Sbjct: 364 NIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPDTAEVINLPETC 412 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S VV G+ +A RC+G L C+AQ++E ++HFVSR A +IEGLG + ++ Sbjct: 413 PVCASPVVM----PEGEALA--RCSGELYCAAQRIESIRHFVSRKAMDIEGLGDRWVESL 466 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E ++ +DI+ L + + T + I G+ SV NL ++I + + +L RFI Sbjct: 467 LHLE----LLKDVSDIYHLHQHRNT----LLGIEKMGEKSVQNLINAIEQSKKTTLARFI 518 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG AR LA + + + Q D SL +VP VGDI A+ I + Sbjct: 519 YALGIRGVGETTARMLANSFQTLEALQQA----------DVDSLKKVPDVGDITAEWIYD 568 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F++ N+ ++ LL + G H + + + V TGTL+ + R +A + + Sbjct: 569 FFRAEHNLEVIDRLL-----AAGIHWDAPIASTRQPLNGESWVLTGTLEHLTREQATQML 623 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 LGA VS +S KT ++ G+ GSKLEKAQ+L ++ +NE+QF+ L++ Y + Sbjct: 624 QALGARVSGSVSAKTKCVVAGEKAGSKLEKAQKLNIQTLNEKQFIELMETYGQVI 678 >gi|157961514|ref|YP_001501548.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345] gi|190359287|sp|A8H376|DNLJ_SHEPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157846514|gb|ABV87013.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345] Length = 668 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 252/710 (35%), Positives = 401/710 (56%), Gaps = 56/710 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + E++ L E++ H+ YY P I D+EYD L R A+ P+ R P+ P + Sbjct: 5 QNEIAQLTAELNQHNYRYYVDDSPSIPDAEYDRLLNRLKALETEHPEFCR---PDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE ++ H P LSL+ +++ ++ F RI K + + EPK+DG Sbjct: 62 VGGEALAKFEQIKHLKPMLSLDNVFDEQEFTAFNQRIV----DKTGKDLSYCCEPKLDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 ++I Y G F AA RGDG +GED++ +R I +IP L N P ++EVRGEV + Sbjct: 118 AVSIVYRDGVFERAATRGDGQTGEDITENVRTIKSIPLTLRGDNFPPLVEVRGEVIMPHK 177 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG----KTSEIFA 251 F ALN+ G K + NPRNAA+G LR+L+ +R L F+ + LG +T E+ A Sbjct: 178 AFDALNERARVKGDKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETWEL-A 236 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Y L+++R G PV+ VR T +++YY +++ RS+L ++IDG+V KV++ + Sbjct: 237 DSHYGQLEQLRSWGVPVSQEVRGCETVAEVMAYYYDIQQRRSSLEFEIDGVVVKVNQIAH 296 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q LG A++PRW + KF ++ T L +D Q+GRTG +TPVARL+PV +GG ++NA Sbjct: 297 QLSLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNA 356 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I L ++VGD ++++RAG+VIP++V ++ +R DA+ FP Sbjct: 357 TLHNADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAVVAEKRPDDAKDIVFP 405 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S V R G+ V RCTGGL C AQ+ E +KHF SR A +I+G+G + + Sbjct: 406 AHCPVCDSEVER----VEGEAVT--RCTGGLFCEAQRKEAIKHFASRKALDIDGMGDKVV 459 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + E + PAD+F R ++ T +E + G S T L +I + + Sbjct: 460 EQLIDKE----LVESPADLF---RLTASAMTMLERM---GMKSATKLVAAIEVAKQTTFA 509 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+++LGIR VG A +LA Y+ + + + A + +++ I+V VG I+A Sbjct: 510 RFLYALGIREVGEATAANLAAYF-------KTLEALKAASAEEF---IKVDDVGTIVAAH 559 Query: 612 IVEFYQNPRNICAVEALLKEV--SPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F P N+ ++ L++ P++ E+++S ++ + V TGTL ++ R+ A+ Sbjct: 560 LAHFLAQPHNLEVIDKLVEAGIHWPAVEEVAEEDLS--LKGQTWVLTGTLTQLNRNDAKA 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+ TD ++ G GSKL KAQ+LGVK+++EE + +L Sbjct: 618 KLQALGAKVAGSVSKNTDCLVAGAAAGSKLTKAQELGVKVIDEEALIAIL 667 >gi|157374877|ref|YP_001473477.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3] gi|190359288|sp|A8FU26|DNLJ_SHESH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157317251|gb|ABV36349.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3] Length = 670 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 258/713 (36%), Positives = 392/713 (54%), Gaps = 55/713 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I++ K+L+S+ E +Y YY P + D+EYD L R + P+L P+ Sbjct: 3 AIQEEIKQLTSVLNEHNYR---YYVDDAPSVPDAEYDRLINRLKQLEAENPELCL---PD 56 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG ++TH P LSL+ +++ ++ F RI K + F EP Sbjct: 57 SPTQRVGGVALAKFNQITHLKPMLSLDNVFSEDEFDAFYKRI----SDKTSETPTFCCEP 112 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG ++I Y G + AA RGDG GED++ +R I +IP ++ + P ++EVRGEV Sbjct: 113 KLDGLAVSILYRDGVYERAATRGDGSVGEDITENVRTIRSIPLKLRGSDFPPLLEVRGEV 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTS 247 + K F +LND A G K + NPRNAA+G LR+L+ +R L F+ + LG S Sbjct: 173 IMPKKAFDSLNDRARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPES 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 KG +E L +++ GFPV++ V+ ++ YY ++ R L Y+IDG+V KVD Sbjct: 233 WPLGKGHHEQLMQLKSWGFPVSSEVKLCGDVKTVLDYYADILERREALDYEIDGVVIKVD 292 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q QLG A++PRW + KF ++ T L +D Q+GRTG +TPVARL+PV +GG Sbjct: 293 SIEHQLQLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVT 352 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++NATLHN D I L ++VGD V+V+RAG+VIP+VV I+ +R A Sbjct: 353 VSNATLHNADEIARL-----------GVKVGDTVIVRRAGDVIPQVVAIVAEKRPVSAND 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 FP CP+C S V R G+ VA RCTGGL C AQ+ E +KHF SR A N++G+G Sbjct: 402 ILFPQTCPVCDSMVER----TEGEAVA--RCTGGLFCEAQRKEAIKHFASRKALNVDGMG 455 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ E + PAD+F L T ++ G S T L +I + Sbjct: 456 DKVVEQLIDKE----LVASPADLFRLTASAMTMLDRM------GMKSATKLVAAIEDAKQ 505 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + RF++ LGIR VG A +LA Y+ + ++ + + + D++ I+V VG I Sbjct: 506 TTFARFLYGLGIREVGEATAANLANYF-------KNLDKLKSADADEF---IKVDDVGAI 555 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +AQ + F+ P N+ V+ L++ P I + S ++ + V TGTL K+ R+ Sbjct: 556 VAQHLTYFFAQPHNLEVVDNLVQAGVHWPEIEEVAEEALS-LKGQTWVLTGTLTKLNRND 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ LGVK+++E+ L +L Sbjct: 615 AKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQDLGVKVLDEDGLLAVL 667 >gi|148982028|ref|ZP_01816589.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3] gi|145960667|gb|EDK26012.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3] Length = 670 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 258/705 (36%), Positives = 393/705 (55%), Gaps = 51/705 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 L L + + YH YY P I D EYD L ++ I P+L + P+ ++GG Sbjct: 9 LEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTVDSPS---QRVGG 65 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + +VTH IP LSL+ ++ EDL F R+ + N F EPK+DG ++ Sbjct: 66 QPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSD--RAPTANLKTFCCEPKLDGLAVS 123 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 + Y G V AA RGDG +GE+++ +R I +IP ++ PE IEVRGEV++ K F Sbjct: 124 LLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKAGFD 183 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYE 256 LN+ + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + Y+ Sbjct: 184 KLNEMALKKGEKVFVNPRNAAAGSLRQLD-SRITAKRPLAFYAYSVGVVEGAELSTSHYQ 242 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +++ G P+ +Q ++ + +YY ++ + R L Y+IDG+V KVD+ + Q+ LG Sbjct: 243 RFLQLKGWGLPMCPETKQLSSLEDVKAYYQDIMTRRDALAYEIDGVVIKVDDIAAQEVLG 302 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEP+ +GG ++NATLHN Sbjct: 303 FVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNA 362 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L ++VGD V+++RAG+VIP++V ++ + R A+ FP CP+ Sbjct: 363 DEIARL-----------GVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVFPDACPV 411 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++GLG + ++ Sbjct: 412 CNSSVER----VEGEAVA--RCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVIEQLVD 465 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E + PAD+F L S I + G S N+ ++NK ++ +L RF++S Sbjct: 466 RE----MVETPADLFKL------SAGVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYS 515 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A +LA+++ + E+ H L+ V +GDI+A I F+ Sbjct: 516 LGIREVGEATAMNLAQHFKTL-----ELVQAATHEQ-----LVEVSDIGDIVASHITAFF 565 Query: 617 QNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +N VE L+ E+ P I + +E K +V TG+L ++ R +A+ + L Sbjct: 566 SQEKNRAVVEQLI-ELGVNWPVIEDVPDDQELPLEGKVVVLTGSLSQLGRSEAKAALQAL 624 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 GA V+ +S+KTDI+ G+ GSKL KAQ LG++I EE + LL Sbjct: 625 GAKVTGSVSKKTDILFAGEAAGSKLIKAQDLGIEIRTEEDLIALL 669 >gi|317153517|ref|YP_004121565.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2] gi|316943768|gb|ADU62819.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2] Length = 678 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 251/709 (35%), Positives = 395/709 (55%), Gaps = 59/709 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L + I +H+ YY P I D+EYDAL R A+ A P+L +D N P ++GGE Sbjct: 13 LRERIEHHNHRYYVLDDPEISDAEYDALFRELAALEAAHPEL---DDANSPTRRVGGEPA 69 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 + H++ SL+ +++ F R+ + + + + + +PK+DG + + Y Sbjct: 70 VGFTPYEHALRMYSLDNAMALDEWFAFAERVSKGLGRSE---VAYWTDPKMDGLAVEVIY 126 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALN 202 E G+ V AA RGDGH GEDV+ +R + +P VL ++P+++EVRGEV +S DF A+N Sbjct: 127 EAGRLVRAATRGDGHIGEDVTHSMRTVMNLPLVLRGPDVPDLLEVRGEVVMSNADFAAMN 186 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT---SEIFA-KGQYEM 257 G K +ANPRN A+G +R+L+P +R L F +G+G+ S +FA Q+E+ Sbjct: 187 QRRREAGEKVFANPRNGAAGAVRQLDPKVAASRPLRFLAYGVGRVQWGSPLFAWTSQHEI 246 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 + + LGF V + + + Y+ + +R+ LPY+IDG+V KVD +Q+ LG Sbjct: 247 MAGLARLGFAVPPEAKLCGSASEVADYFTRLMELRAGLPYEIDGVVAKVDNLEMQRALGF 306 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PRW ++ KF QA T L DI IQ+GRTG+LTPVA LEPV + G +++NATLHN+ Sbjct: 307 TSRAPRWALALKFPAHQARTMLRDIRIQVGRTGVLTPVAELEPVPLAGVIVSNATLHNKG 366 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI RD R+GD VL++RAG+VIP+V+ + V +R A P+ FP+ CP+C Sbjct: 367 YI-----------AERDFRIGDTVLIQRAGDVIPQVLSVDVGQRPESATPYEFPAICPVC 415 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 D G+ V RCT C A+ ++R+ HFVS+ ++EG+G+ + + Sbjct: 416 GGEARED-----GEAV---RCTNP-TCPAKTVQRIIHFVSKAGLDMEGVGRTWVRRL--A 464 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK-RRNISLERFIFS 556 ED + PAD+FTL + T+ + E G GD S ++I++ RR L R I Sbjct: 465 EDGV--LETPADLFTLDK---TALLRYE---GMGDKSADKFIEAIDRARRTAPLWRLIAG 516 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG + AR+LA Y AQ + D+ L+L VG ++A+++ F+ Sbjct: 517 LGIRHVGEQTARTLAARYRDLDALAQA-------DRDELLALDD---VGPVVAESVHFFF 566 Query: 617 QNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYV 670 ++ ++ + + P G+ NV+ N L +FTG+L + R +A+ V Sbjct: 567 RSEETRSLLQRFREADFWPLGGQTAANVADAAGNAPLAGKVFIFTGSLPGMTRDQAKLLV 626 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G +S+K D ++ GD GSK+ KA++LG+ +++ + F+ LLQ Sbjct: 627 EERGGAAVPSISKKVDYVVAGDKAGSKIAKAEKLGLTVIDFDGFMELLQ 675 >gi|317491275|ref|ZP_07949711.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920822|gb|EFV42145.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 678 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 254/703 (36%), Positives = 395/703 (56%), Gaps = 58/703 (8%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 + +H+ Y+ P I D+EYD L R A+ P+L P+ P ++G + Sbjct: 20 LRHHEYQYHVLDAPEIPDAEYDRLMRELRALEEQHPELI---TPDSPTQRVGAAPLSAFS 76 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 +V H +P LSL+ +++ E F R++ + K + F E K+DG +++ YE G Sbjct: 77 QVRHEVPMLSLDNVFDDESYLAFDKRVHD--RLKTAEPLTFCCELKLDGLAVSLLYEDGV 134 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 V A RGDG +GED++A ++ I IP R+ NIP +EVRGEV++ F A+N+E Sbjct: 135 LVRGATRGDGTTGEDITANVKTIRAIPLRLQGDNIPRRVEVRGEVFMPLAGFEAMNEEAR 194 Query: 207 AVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQYEMLQKMRC 263 K +ANPRNAA+G LR+L+P R L FF +G+G E+ A Y LQ+ + Sbjct: 195 RKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLMDGGELPAS-HYARLQQFKA 253 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 G PV++ V++ ++ +Y +++ R TL +DIDG+V KVD +Q+QLG AR+PR Sbjct: 254 WGLPVSDRVKRCTGSDEVLKFYRQVEQERPTLGFDIDGVVIKVDSIEIQEQLGFVARAPR 313 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W + KF ++ T + ++ Q+GRTG +TPVARLEPV + G +++NATLHN D I L Sbjct: 314 WATAFKFPAQEQMTVVNGVEFQVGRTGAITPVARLEPVLVAGVIVSNATLHNADEIDRL- 372 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 +R+GD V+V+RAG+VIP+VV ++ +R +AQ FP CP+C S V R Sbjct: 373 ----------GLRIGDTVIVRRAGDVIPQVVGVVEAQRPENAQEIVFPQHCPVCGSDVER 422 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + ++ + E Sbjct: 423 ----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIEQLVEKE----Y 472 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 ++ PAD++ L T ++ G S TNL +++ K + +L RF+++LGIR VG Sbjct: 473 VKTPADLYRLTAGILTGLDRM------GPKSATNLVNALAKSKETTLARFLYALGIREVG 526 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 A +LA ++ S + A D +L V VG+++A+ + F N Sbjct: 527 EATAANLAAHFGSLE----------ALREADVEALKSVQDVGEVVAKHVRHFLGEEHNQK 576 Query: 624 AVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 ++ L +S IG H + + S K +V TG+L + R +A++ + LGA Sbjct: 577 VIDEL---ISDEIGIHWPAPQVIVAEEIDSPFAGKTVVLTGSLSLMPRDEAKDRLAALGA 633 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 634 KVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLL 676 >gi|229846132|ref|ZP_04466244.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1] gi|229811136|gb|EEP46853.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1] Length = 670 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 260/715 (36%), Positives = 410/715 (57%), Gaps = 71/715 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 5 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 62 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKQLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G AA RGDG GED++A IR I +P ++L+ N P +EVRGE Sbjct: 115 PKLDGLAVSILYVNGVLTQAATRGDGTIGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYQDIQNKRSSLGYDIDGTVLKIN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ +LG +++PRW ++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G Sbjct: 294 DIALQNELGFISKAPRWATAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVT 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 ++NATLHN D I+ L +I +GD V+++RAG+VIP+++ ++ +ER PD A+ Sbjct: 354 VSNATLHNGDEIERL-----------NIAIGDTVVIRRAGDVIPQIIGVL-HERRPDNAK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S+++R G+ VA RCTGGL C+AQ+ E LKHFVSR A +I+G+ Sbjct: 402 PIIFPTNCPVCDSQIIR----IEGEAVA--RCTGGLFCAAQRKEALKHFVSRKAMDIDGV 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ E I PAD+F L T+ T++E + G S N +S+ + Sbjct: 456 GGKLIEQLVDRE----LIHTPADLFKLDL---TTLTRLERM---GTKSAENALNSLENAK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RFIF+LGIR VG A +LA ++ + A + + L +VP VG+ Sbjct: 506 STTLARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGE 555 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSE--IENKKLVFTGTLQK 660 ++A I F++ N+ VE L+ + G H + V +SE ++K +V TGTL + Sbjct: 556 VVANRIFIFWREAHNVAVVEDLIAQ-----GVHWETVEVKEASENLFKDKTVVLTGTLTQ 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A+ + QLGA VS +S KTD +I G+ GSKL KAQ+L + ++ EE+FL Sbjct: 611 MGRNEAKALLQQLGAKVSGSVSSKTDFVIAGNAAGSKLAKAQELNITVLTEEEFL 665 >gi|262379150|ref|ZP_06072306.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164] gi|262298607|gb|EEY86520.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164] Length = 682 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 259/715 (36%), Positives = 393/715 (54%), Gaps = 55/715 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L Q I+ H+ YY +P I D+EYD+L + A+ +PDL +++ P ++G Sbjct: 14 QMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDTPT---RRVG 70 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G+ V H++P LSL ++N EDL F R+ ++ + + +E K+DG I Sbjct: 71 GQALSKFMSVRHAVPMLSLGNVFNKEDLFAFARRVE---ERLPGQQVKYEVELKLDGLAI 127 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISKN 196 ++ YE G+ V RGDG +GED++ ++ I +P+ L IP+++EVRGEV I K Sbjct: 128 SLWYENGELVRGVTRGDGETGEDITQNVKTIRNLPKYLYSDQAAIPKLLEVRGEVLIPKT 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS-EIFAKGQ 254 FL LN E A G K +ANPRNAA+G LR+L+P R L F+ +G+ + E Sbjct: 188 GFLKLNAENEAKGEKIFANPRNAAAGSLRQLDPGIAAARPLAFYAYGIAQCEPEHHLNSM 247 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L +R LGF + ++ + Y ++ R+ L +IDG+V KVD QKQ Sbjct: 248 TESLHWLRDLGFEIAERQFLCDSIEEVQRRYEKIMEERADLGVEIDGMVVKVDSLKQQKQ 307 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R PRW ++KF A T + +ID Q+GRTGILTPVARL PV +GG ++N TLH Sbjct: 308 LGFLSREPRWATAYKFPAIAALTTVENIDWQVGRTGILTPVARLNPVFVGGVTVSNVTLH 367 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I L D+R+GD V V R G+VIPKV + R A+ + P C Sbjct: 368 NIGEIHRL-----------DVRIGDTVSVYRTGDVIPKVEKVWPEFRPDTAEVINLPETC 416 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S VV G+ +A RC+G L C+AQ++E ++HFVSR A +IEGLG + ++ Sbjct: 417 PVCASPVVM----PEGEALA--RCSGELYCAAQRIESIRHFVSRKAMDIEGLGDRWVESL 470 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E ++ +DI+ L + + T + I G+ SV NL ++I + + +L RFI Sbjct: 471 LHLE----LLKDVSDIYHLHQHRNT----LLGIEKMGEKSVQNLINAIEQSKKTTLARFI 522 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG AR LA + + + Q D SL +VP VGDI A+ I + Sbjct: 523 YALGIRGVGETTARMLANSFQTLEALQQA----------DVDSLKKVPDVGDITAEWIYD 572 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F++ N+ ++ LL + G H + + + V TGTL+ + R +A + + Sbjct: 573 FFRAEHNLEVIDRLL-----AAGIHWDAPIASTRQPLNGESWVLTGTLEHLTREQATQML 627 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 LGA VS +S KT ++ G+ GSKLEKAQ+L ++ +NE+QF+ L++ Y + Sbjct: 628 QALGARVSGSVSAKTKCVVAGEKAGSKLEKAQKLNIQTLNEKQFIELMETYGQVI 682 >gi|126649600|ref|ZP_01721841.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905] gi|126593925|gb|EAZ87848.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905] Length = 667 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/716 (35%), Positives = 407/716 (56%), Gaps = 61/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ EL+ L E Y YY KP++ DS YD L A+ A P L P+ Sbjct: 4 IEQRIAELNKLLHEYGY---AYYVLDKPVVADSVYDQLLHELIALEEANPSLIF---PDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + KVTH P LSL +N DL++F ++ ++ + + E K Sbjct: 58 PTQRVGGTVVEGFKKVTHDYPMLSLSNAFNEADLQEFDRKV----RQAIGDHFSYVCELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+++YE G FV A RGDG GE+++A ++ I IP L L P IEVRGE Y+ Sbjct: 114 IDGLAISLKYENGVFVQGATRGDGVVGEEITANLKTIHAIP--LRLKEPITIEVRGEAYM 171 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA- 251 K F LN + G + +ANPRNAA+G LR+L+P +R L+ F++ +G E++ Sbjct: 172 PKKSFEKLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGI 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 G EML + LGFP N ++ +T ++++ R L Y+IDG+V KVD ++ Sbjct: 232 DGHAEMLDYLEDLGFPSNKERQRCSTIEEVMAFIEHWTEHRPHLAYEIDGIVIKVDRYAQ 291 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG A+SPRW I++KF ++ T LLDID+ +GRTG++TP A L PV + G + A Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED I+ +DIR+GD V++++AG++IP+VV +++ +R ++ PF P Sbjct: 352 SLHNEDLIR-----------EKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPENSVPFEMP 400 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S ++R G++ A RC AC AQ E +K+FVSR+A NI+GLG + + Sbjct: 401 QNCPVCDSELIR----IEGEV--ALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + +++ I +D++ L Q ++ G+ S TNL ++I + S+E Sbjct: 454 EQLLRAD----LIHDVSDLYHLTIEQLVELERM------GEKSATNLVNAIQASKENSME 503 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + LGIRHVG + A+ +++ + S + ++A ++ L+ + +GD +A + Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEQFGSME-------AVMAATDE---QLVAIYEIGDKMASS 553 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQRHKA 666 +VE++ N + AV L EV ++ K V + + K +V TG L+++ R++A Sbjct: 554 LVEYFSND-DAGAVIERLAEVGVNMTFKGKKVEVVVGDNPFAGKTIVLTGKLEQLTRNEA 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + +LG V+ +S+KTD++I G++ GSKL KA+QLG+++ NEE L++Q N Sbjct: 613 KAKIEELGGTVTGSVSKKTDLVIAGEDAGSKLAKAEQLGIEVWNEEN---LIEQLN 665 >gi|284047985|ref|YP_003398324.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731] gi|283952206|gb|ADB47009.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731] Length = 675 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 259/717 (36%), Positives = 391/717 (54%), Gaps = 57/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E A + L + + YY P+I D+EYDA+ R A+ +P+L P Sbjct: 4 MTKEAAAARIDQLRAVMKKNSYLYYVQDNPLITDAEYDAMMRELKALEAEYPELV---TP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +GG +V H P LSL ++ E++ +F R++ + D + + +E Sbjct: 61 DSPSQHVGGYAKPGFTEVRHMTPLLSLANAFSPEEMEEFDRRVHEGLPQ--DVKVQYVVE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEV 187 PKIDG +I YE G+FV AA RGDG GE+V+ +R I IP+VL + IPE+++V Sbjct: 119 PKIDGLACSIIYENGRFVRAATRGDGVVGENVTENVRTIANIPKVLKPIPGIEIPELLDV 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGEVY+ + F+ LN+E G + +AN RNAA+G LR+L+P R L FF +G+G Sbjct: 179 RGEVYMPRQAFVKLNEERQEAGEQEFANCRNAAAGSLRQLDPRVTARRSLAFFAYGVGVG 238 Query: 247 SEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + +MLQ+ GF G +T + R+ L YD DG+V Sbjct: 239 AGNLPTHNASMDMLQQ---YGFTTTEGRTLVDTIQEANELIKKHGERRAVLGYDTDGVVV 295 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ Q LG + PRW +++KF +QA T L DI IQ+GRTG+LTP A L PV + Sbjct: 296 KVNDVWQQNILGATGKDPRWAMAYKFPPEQAETLLEDIVIQVGRTGVLTPTAVLRPVRLS 355 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ I+ ATLHNED+I+ RDIR+GD V++ +A E+IP+V+ ++ +R + Sbjct: 356 GSTISRATLHNEDFIR-----------ERDIRIGDHVIINKAAEIIPEVLRVVPEKRTGE 404 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + F P CP C +V R K G+ AA RCT C A E L HF SRDA NI+ Sbjct: 405 EKEFHMPETCPECGWKVER----KAGE--AAWRCTNP-HCPALGREGLIHFTSRDAMNID 457 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G G L A ++ P D++ L R Q +E + G S NL +I Sbjct: 458 GCGPSVLAQLTA----AGLVKDPGDLYLLTREQ------VETLDRMGPKSADNLVSAIAA 507 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +N SL++ +F+LGIRHVGA++A +LA+ Y + ++ ++A + +D L + P + Sbjct: 508 SKNQSLDKLLFALGIRHVGAKVAHTLARKYGT-------MDKLMAADQED---LAQTPDI 557 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKI 661 G +IA+++V ++ +P N VE LKE+ ++ E K LVFTGTL + Sbjct: 558 GPVIAESVVTWFADPMNQAYVER-LKELGLNMEMTSGPAQDENHPFYGKTLVFTGTLPTL 616 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+ ++GA V+ +S+KTD ++ G +PGSK KAQ LGV I++E +FL ++ Sbjct: 617 DRATAKTMAQEVGAKVTGSVSKKTDYVVAGADPGSKYTKAQSLGVTILDEAEFLRMM 673 >gi|119774653|ref|YP_927393.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B] gi|166216239|sp|A1S5R7|DNLJ_SHEAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119767153|gb|ABL99723.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B] Length = 681 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 257/718 (35%), Positives = 399/718 (55%), Gaps = 60/718 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I Q + E+ L EI+ H+ YY P I D+EYD L + A+ +P A +P+ Sbjct: 10 TIMQVKAEIQRLTAEINRHNIAYYVQDAPSIPDAEYDRLMNQLKALEAEYPQFA---EPD 66 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG +V+H P LSL+ +N ED F R+ S + EP Sbjct: 67 SPTQRVGGAALNKFEQVSHLKPMLSLDNAFNEEDFVAFDKRL-----TDKVGSQVYCAEP 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG +++ Y G AA RGDG GED+S +R I ++P R+ +IP ++EVRGEV Sbjct: 122 KLDGLAVSLIYRNGVLERAATRGDGAVGEDISVNMRTIKSVPLRLQGDDIPALVEVRGEV 181 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE- 248 ++ + F ALND A G K + NPRNAA+G LR+L+ + IT R L F+ + LG + Sbjct: 182 FMPRAAFEALNDRARAKGDKLFVNPRNAAAGSLRQLD-SKITAERSLAFYAYALGVVQDD 240 Query: 249 -----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + A L+++ G PV+ V+ +++YY ++ R L ++IDG+V Sbjct: 241 NGADLVLAPTHKGQLERLTAFGLPVSKEVKLCEGLAEVMAYYADILKRRDELAFEIDGVV 300 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++ Q+QLG AR+PRW I+ KF ++ T L +D Q+GRTG +TPVARL+PV + Sbjct: 301 IKVNDIEAQQQLGFVARAPRWAIAFKFPAQEEMTVLEGVDFQVGRTGAVTPVARLKPVFV 360 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHN D I L +++GD V+++RAG+VIP++V +V ER P Sbjct: 361 GGVTVSNATLHNGDEIARL-----------GVKIGDTVIIRRAGDVIPQIV-AVVPERRP 408 Query: 424 D-AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D AQ FP CP+C S V R G+ VA RC+GGL C AQ+ E +KHF SR A Sbjct: 409 DEAQDILFPDNCPVCGSLVER----IEGEAVA--RCSGGLFCEAQRREAIKHFASRKAMY 462 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+G+G + ++ E + PAD+F L + +K+ + G S TNL +I Sbjct: 463 IDGMGDKVVEQLIDKE----LVESPADLFKL------NVSKLTMLERMGTKSATNLVAAI 512 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + +L +F+++LGIR VG A +LAK++ S + A + D +LI+V Sbjct: 513 EEAKTTTLPKFLYALGIREVGEATAANLAKHFRSLE----------AIRDADVDALIQVE 562 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQK 660 VG ++AQ + F+ P N+ ++AL+ P+I + + + + + V TGTL Sbjct: 563 DVGTVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIEKPSAD-AQPLLGQTWVLTGTLTS 621 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A+ + LGA V+ +S+ T ++ G+ GSKL KAQ+LG+ +++E + L+ Sbjct: 622 LGRTEAKAKLEALGAKVAGSVSKNTHCVVAGEAAGSKLAKAQELGIPVLDEAGLIELI 679 >gi|320540519|ref|ZP_08040169.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson] gi|320029450|gb|EFW11479.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson] Length = 685 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 248/711 (34%), Positives = 402/711 (56%), Gaps = 54/711 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++++ L + +H+ Y+ P + D+EYD L + A P+L ++ P ++ Sbjct: 6 EQINQLRASLRHHEYQYHVLDAPEVPDAEYDRLMCELRELESAHPELITADSPT---QRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + + +V H + LSL+ +++ E F R+ + D + F E K+DG Sbjct: 63 GAALLAAFDQVRHELLMLSLDNVFDEESFLAFYKRVQERLKISD--PLTFCCELKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G+ V AA RGDG +GE++++ +R I IP R+ NIP +EVRGEV++ + Sbjct: 121 VSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGANIPRRLEVRGEVFMPQAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQ 254 F +N E K +ANPRNAA+G +R+L+P R L FF +G+G + E+ + Sbjct: 181 FEQMNTEARRKNGKIFANPRNAAAGSIRQLDPRITANRPLTFFCYGVGLLEGGEL-PRSH 239 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E L + R G PVN+G R ++++Y++++ R+ L +DIDG+V K+D+ LQ++ Sbjct: 240 FERLMQFRAWGLPVNDGARCCTGSDEVLAFYHQVEQDRAQLGFDIDGVVVKIDDIDLQEK 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW + KF ++ T + +I+ Q+GRTG +TPVARLEPV + G ++NATLH Sbjct: 300 LGFVARAPRWATAFKFPAQEQITLVREIEFQVGRTGAITPVARLEPVLVAGVTVSNATLH 359 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L +R+GD V+V+RAG+VIPKVV ++ + R D + FP C Sbjct: 360 NADEIERL-----------GLRIGDTVIVRRAGDVIPKVVGVLEDRRPQDTRAVVFPQHC 408 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V R G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + ++ Sbjct: 409 PVCGSDVER----LEGEAVA--RCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKIIEQL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E ++ PAD+F L S + + G S NL +++ K R + RF+ Sbjct: 463 VEKE----YVKNPADLFRL------SANMLSGLDRMGPKSAQNLVNALEKSRQTTFARFL 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG A +LA ++ S + D +L VP VG+++AQ Sbjct: 513 YALGIREVGEATAANLAAHFGSLEKLYAA----------DIAALKEVPDVGEVVAQHTRH 562 Query: 615 FYQNPRN------ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 F N + +VE + P + E+ + S K +V TG+L ++ R A++ Sbjct: 563 FLDEALNQKVIAELVSVEIGINWPVPVVVATEE-IDSPFAGKTVVLTGSLSQLSRDDAKD 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA +S +S+KTD++I G+ GSKL KAQ+LG+++++E + L L++ Sbjct: 622 RLKVLGAKISGSVSKKTDLVIAGEAAGSKLVKAQELGIEVIDEAELLRLIE 672 >gi|153826197|ref|ZP_01978864.1| DNA ligase [Vibrio cholerae MZO-2] gi|149740057|gb|EDM54226.1| DNA ligase [Vibrio cholerae MZO-2] Length = 669 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 249/708 (35%), Positives = 399/708 (56%), Gaps = 51/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L+ L + + H YY P I D+EYD L R + A P+L S+ P+ ++ Sbjct: 6 QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + V H IP LSL+ ++ +L F R+ ++ F EPK+DG Sbjct: 63 GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G AA RGDG +GE+++ +R I +IP R+ + P +EVRGEV++ K Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253 F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + E+ A Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ LQ+ Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NATL Sbjct: 299 RLGFVARAPRWAIAYKFPSQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ FP+ Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+CQS V R G+ VA RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L+ + T ++ G S N+ D++NK + +L +F Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A +LA+++LS + Q I VP VG ++A ++ Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLL 561 Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ + Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|297578580|ref|ZP_06940508.1| DNA ligase [Vibrio cholerae RC385] gi|297536174|gb|EFH75007.1| DNA ligase [Vibrio cholerae RC385] Length = 669 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 250/708 (35%), Positives = 398/708 (56%), Gaps = 51/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++L+ L Q + H YY P I D+EYD L R + A P+L S+ P+ ++ Sbjct: 6 QKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + V H IP LSL+ ++ +L F R+ ++ F EPK+DG Sbjct: 63 GGRPLDAFESVVHEIPMLSLDNAFDDSELDSFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G AA RGDG +GE+++ +R I IP R+ + P +EVRGEV++ K Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253 F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + E+ A Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ LQ+ Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NATL Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ FP+ Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+CQS V R G+ VA RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L+ + T ++ G S N+ D++NK + +L +F Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A +LA+++LS + Q I VP VG ++A + Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLQ 561 Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ + Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|229525582|ref|ZP_04414987.1| DNA ligase [Vibrio cholerae bv. albensis VL426] gi|229339163|gb|EEO04180.1| DNA ligase [Vibrio cholerae bv. albensis VL426] Length = 669 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 251/708 (35%), Positives = 399/708 (56%), Gaps = 51/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++L+ L Q + H YY P I D+EYD L R + A P+L S+ P+ ++ Sbjct: 6 QKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + V H IP LSL+ ++ +L F R+ ++ F EPK+DG Sbjct: 63 GGRPLDAFESVVHEIPMLSLDNAFDDSELDSFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G AA RGDG +GE+++ +R I +IP R+ + P +EVRGEV++ K Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253 F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + E+ A Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ LQ+ Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NATL Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ FP+ Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+CQS V R G+ VA RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L+ + T ++ G S N+ D++NK + +L +F Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A +LA+++LS + Q I VP VG I+A + Sbjct: 512 LYALGIREVGEATAFNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVIVASHLQ 561 Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ + Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|126668324|ref|ZP_01739283.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17] gi|126627241|gb|EAZ97879.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17] Length = 703 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 250/732 (34%), Positives = 398/732 (54%), Gaps = 67/732 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L I+ H+ YY P + D+EYD L R A+ +P+LA + P + Sbjct: 9 RDRVHQLRTTITDHNHHYYVLDDPQVPDAEYDRLFRGLQALEAEYPELATA---TSPTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK----------------- 120 +G + S +V H IP LSL+ ++ +DLR F R+ + Sbjct: 66 VGSAVETSFAEVIHRIPMLSLDNAFSADDLRDFDRRVRERLNRGNTAGEDSIREDSTAEE 125 Query: 121 -------KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI 173 K++ +I + EPK+DG +++ Y+ G+ V AA RGDG++GED++A IR I ++ Sbjct: 126 GSKEEDSKEERTIEYVCEPKLDGLAVSLHYQNGELVRAATRGDGYTGEDITANIRTIASV 185 Query: 174 PRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI 232 P L + P+ +EVRGEVY+ + F LN + G K + NPRNAA+G LR+ + Sbjct: 186 PLTLRGGDFPQTVEVRGEVYMPRAGFDRLNQRLAGRGEKTFVNPRNAAAGSLRQKKSSVT 245 Query: 233 TRY-LNFFVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290 R L + + T E +E LQ++ GF +N + A + Y + + Sbjct: 246 ARRPLEMCAYSVAVTDESALPPTHWEGLQQVSEWGFRINPEMSLAIGADQCLEAYEALMA 305 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R +LPY+IDG+V+KV+ LQ+QLG +R+PRW I+ KF ++ T + ++ Q+GRTG Sbjct: 306 KRDSLPYEIDGIVFKVNRLDLQQQLGFVSRAPRWAIAQKFPAQEELTVVESVEFQVGRTG 365 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVARL+PV +GG ++NATLHN D ++ L D+ +GD V ++RAG+VI Sbjct: 366 AITPVARLKPVFVGGVTVSNATLHNMDEVRRL-----------DLHIGDTVFIRRAGDVI 414 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 PKVV ++ N+R DA P+ CP C S VV+ G+++A RC+GGL C AQ+ E Sbjct: 415 PKVVKVVQNKRPADAWVIELPAQCPACGSDVVQ----IEGEVIA--RCSGGLFCPAQRKE 468 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 ++H+ SR A +IEGLG + +D S+ + AD++ L + T ++ Sbjct: 469 AIRHYASRKALDIEGLGDKWVDILVDSK----KVETIADLYRLCKADLTVLERM------ 518 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 GD S +NL +I+ R L RF+++LGIR VG A+ LA Y+ S + A+ Sbjct: 519 GDKSASNLIAAIDASRQPLLWRFLYALGIREVGEATAKGLAGYFGSLEAIAEA------- 571 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 D +L V VG I+A + F++ P N ++ L + + S + + Sbjct: 572 ---DESALQAVSDVGPIVAGHLRSFFEQPHNQEILQNLTQAGVIWQTQEITAASMPLHGQ 628 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 V TGT++++ R +A++ + LGA V+ +S+KT ++ G+ GSKL KAQQLGV++++ Sbjct: 629 TWVLTGTMEQMTRDQAKQKLEGLGAKVAGSVSKKTACVVAGEAAGSKLAKAQQLGVEVLS 688 Query: 711 EEQFLFLLQQYN 722 E+ L LL+ ++ Sbjct: 689 EQGLLDLLRGHD 700 >gi|295697355|ref|YP_003590593.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912] gi|295412957|gb|ADG07449.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912] Length = 677 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 265/714 (37%), Positives = 402/714 (56%), Gaps = 63/714 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL +L + YH YY P++ D+EYD R + P+L P+ P ++ Sbjct: 12 EELRALIRRYDYH---YYVLDDPLVDDAEYDRCMRELVELEARHPELV---TPDSPTQRV 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + + KV H P LSL ++ D+R+F R+ +D + + E KIDG Sbjct: 66 SGAPSEAFAKVIHREPMLSLANAFSEGDVREFDRRVRAALPGED---VEYVCELKIDGLA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKN 196 I++RYE G+FV A RGDG GED++ +R I RVL L +PE +EVRGE Y+ K Sbjct: 123 ISLRYENGEFVQGATRGDGELGEDITRNLRTI----RVLPLRLPERVSVEVRGEAYMPKK 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG--LGKTSEIFA-- 251 FL +N E G + +ANPRNAA+G LR+L+P R L+ +++ LG + Sbjct: 179 VFLRVNRERDEAGEQAFANPRNAAAGSLRQLDPRVTARRGLSLWMYAAVLGPDGTVPGGP 238 Query: 252 ---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + E+L+ + LGFPVN R + + NE +R+TLPYDIDG+V KV+ Sbjct: 239 GPFRTHEEILKWLDTLGFPVNPHRRVCRNLEEVFQFLNEGDRLRNTLPYDIDGMVIKVNN 298 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q +LG A+SPRW +++KFA +QA TRLL I++ +GRTG++TP A EPV + G + Sbjct: 299 LDQQNRLGATAKSPRWAMAYKFAPEQAETRLLTIEVSVGRTGVVTPTAVFEPVFLAGTTV 358 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHNED I+ RDIR+GD V+V++AGE+IP+VV + + R + F Sbjct: 359 SRASLHNEDLIR-----------ERDIRIGDIVVVEKAGEIIPEVVRVRADLRTGEEHIF 407 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 S P CP C S +VR L + A RC C AQ E + HF SRDA NIEGLG+ Sbjct: 408 SMPKDCPACGSPLVR-LEEEV-----ALRCVNP-DCPAQIQEGIIHFASRDAMNIEGLGE 460 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E S+ AD++ L+R Q ++ G S NL +I + + Sbjct: 461 ALVAQLYR-EGLIHSV---ADLYELKREQLVPLERM------GAKSADNLLQAIERSKQN 510 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SLER +F LGIR++G + +R LA ++ +E++ ++ ++++ L++VP +G + Sbjct: 511 SLERLLFGLGIRYIGEKASRVLAAHF-------KEMDALMEASSEE---LLKVPDIGAKM 560 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 AQ+I ++ +E L + G V S + K +V TGTL + R +A Sbjct: 561 AQSIRVYFGQESARRLIERLRAHGVNMVYRGAEAAPVPSRLAGKTVVLTGTLHAMGRREA 620 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 Q++V +LG + +SRKTDI+I G++PGSKL KA+QLGV+++NE+QFL +L++ Sbjct: 621 QDWVRRLGGKPTESVSRKTDIVIAGEDPGSKLVKARQLGVEVINEDQFLSILRE 674 >gi|309792382|ref|ZP_07686850.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6] gi|308225603|gb|EFO79363.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6] Length = 674 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 253/688 (36%), Positives = 373/688 (54%), Gaps = 49/688 (7%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 H+ YY P + D+EYDAL R + P+L P+ P ++G + KV Sbjct: 20 HNYRYYVLDDPNVSDAEYDALMRELRHLEATHPELC---SPDSPTQRVGAPVTSQFGKVR 76 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 H LSL ++ DL + R+ + D + + +EPKIDG I++ Y G+F Sbjct: 77 HPQAMLSLGNAFDEADLHAWRERVLKLLGA--DTPLAYVVEPKIDGLAISLTYRAGRFEL 134 Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGEVYISKNDFLALNDEM 205 A RGDG GEDVSA +R + IP +L IP IEVRGEVY+ DF ALN + Sbjct: 135 GATRGDGEVGEDVSANLRTVRGIPLLLRTETPDTPIPTSIEVRGEVYMRSADFEALNKRL 194 Query: 206 IAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 + G K +AN RN+A+G LR+ +P R L FF + +G + Q++ L +R L Sbjct: 195 ASSGEKIFANARNSAAGSLRQKDPAITANRPLRFFAYQVGPVEGVELTSQWQTLAYLRDL 254 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 GFPVN R+ + F ++ Y + R +L ++ DG+V K+D+F+ Q++LG R PRW Sbjct: 255 GFPVNRDARRFDDFAAVLDYCRAWMARRDSLEFEADGIVIKIDDFAQQRELGVVGRDPRW 314 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 I+ KF ++A+TRL I + +GRTG+LTP A LEPV IGG + NA+LHN DYI Sbjct: 315 AIAFKFPAREATTRLQAITVNVGRTGVLTPGAELEPVVIGGVTVRNASLHNADYI----- 369 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 RDIRVGD V VKRAG+VIP V+ I++ R QP+SFP+ CP C + + R Sbjct: 370 ------AERDIRVGDYVTVKRAGDVIPYVIGPILSRRDGSEQPWSFPTTCPACGTALER- 422 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 G+ AA RC C AQ + R++H+VSR A +I G+G++Q + F A I Sbjct: 423 ---VEGE--AAWRCPNFGICPAQLVRRVEHYVSRGALDIVGIGEKQAELFVT----AGLI 473 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 AD++ L + + GFG + NL +I + + L+R + LGIR VG+ Sbjct: 474 ADVADLYALHMHH------FQGMEGFGPKKIANLITAIEESKTRPLDRLLVGLGIRFVGS 527 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 A++LA Y S ++ I+A D L ++ +G ++A ++V+F+Q+P N Sbjct: 528 VAAQTLANQYGS-------LDAIMAATQAD---LEQIEGIGPVLAASVVDFFQHPENRAL 577 Query: 625 VEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 VE L G + + S+ + K V TGTL + R +A E + G +S +S+ Sbjct: 578 VEKLRAAGLTLTGGVPRQLQSQNLSGKTFVLTGTLPTLTREQAAEMILAHGGKLSESVSK 637 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 KT ++ G + GSKL KA QLGV +++E Sbjct: 638 KTSYVVAGASAGSKLAKATQLGVPVLDE 665 >gi|161831535|ref|YP_001596473.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331] gi|190359249|sp|A9NC33|DNLJ_COXBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161763402|gb|ABX79044.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331] Length = 670 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 259/711 (36%), Positives = 410/711 (57%), Gaps = 58/711 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L EI+ H+ YY S+P I DS YD L + + +P+ + P+ P + Sbjct: 8 QKRIERLRHEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPE---TITPSSPTQR 64 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G E L +F+ V H IP LSL+ +++ + LR F RI + + K D + EPK+DG Sbjct: 65 VGAE-PLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQ--RLKLDKPFEYVCEPKMDG 121 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 +++ YE G+ + AA RGDG++GE+V+ R I ++P L N PE++E+RGEV + + Sbjct: 122 VALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPR 181 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH--GLGKTSEIFAK 252 F N E G K +ANPRNAASG LR+L+P R L F+ + GL K + F K Sbjct: 182 EGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD-FPK 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++L+ + G PV + ++ G + YY + R +P+DIDG+V KV+ +Q Sbjct: 241 NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +R+PRW I++KF ++ T + I+ Q+GRTG +TPVARLEPV++ G ++NAT Sbjct: 301 AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D ++ R +D+RVGD V+V+RAG+VIP+VV I+ +R A+ PS Sbjct: 361 LHNFD---------ELYR--KDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPS 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + V++ G+ VA RC GGL C AQ E +KHF SR A +IEGLG + ++ Sbjct: 410 RCPVCHAEVIKP----EGEAVA--RCVGGLYCRAQLRESIKHFSSRRALDIEGLGDKLVE 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F + ++ DI + + ++++ T + + G+ S NL +I K + +L R Sbjct: 464 LFIQE-------KLIKDITGIYQLKKSAITALPRM---GEKSAENLLTAIEKSKKTTLPR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG AR+LA+++ E++ ++ + + +L + +G + A+ I Sbjct: 514 FLYALGIRGVGDTTARTLARHF-------HELDLLMKASIE---TLQEIRDIGPVAAENI 563 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRH---EKN-VSSEIENKKLVFTGTLQKIQRHKAQE 668 F+ N + L+ +G H EK V SEI K V TG L+ + R +A+E Sbjct: 564 HAFFHQKNNAELINKLI-----HLGVHWPQEKAVVKSEIAGKTFVLTGALKSLTREEAEE 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G ++ +S+ TD +IVG+NPGSK EKA+ LG+ +++EE FL LL+ Sbjct: 619 KIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 669 >gi|303258051|ref|ZP_07344059.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47] gi|331000674|ref|ZP_08324326.1| DNA ligase [Parasutterella excrementihominis YIT 11859] gi|302859070|gb|EFL82153.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47] gi|329570827|gb|EGG52542.1| DNA ligase [Parasutterella excrementihominis YIT 11859] Length = 684 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 247/711 (34%), Positives = 387/711 (54%), Gaps = 45/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + + L +E+ H+ YY + P + D YD+L + + +P + P Sbjct: 9 LEAVKLRMEKLAEELEKHNKAYYIDNAPTVSDEIYDSLFQELARLEKEYPQF---KSPVS 65 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++G + L KVTH++P LS+ E + + F R+ R + D +I + E Sbjct: 66 PTERVGATVQSELKKVTHAVPMLSIHTETDYTAQGAYDFDARVRRELELTPDQTIDYDCE 125 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I +RYE G V AA RGDG++GEDV+A ++ I T+P + P+I EVRGEV Sbjct: 126 LKFDGLAINLRYEDGVLVQAATRGDGYTGEDVTANVKTIKTLPLKVD-GFPKIFEVRGEV 184 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 + K F LN+E AVG K +ANPRNAA+G LR+L+ R LNF+ +G G+ SE+ Sbjct: 185 IMHKEVFRKLNEEQEAVGAKLFANPRNAAAGSLRQLDSALTAKRNLNFYAYGYGEVSEMP 244 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Q +L ++ GFPV + T + +++ E+ IR LP+DIDG+VYKV+ F+ Sbjct: 245 ADTQSGLLDYLKSKGFPVISNRIVVQTPEQLEAFHLEVARIRHDLPFDIDGVVYKVNSFA 304 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 QKQLG +R PRW ++HK+ ++ T++LDI +Q+GRTG LTPVARL+PV +GG I+N Sbjct: 305 RQKQLGFVSREPRWAVAHKYPPEEVQTQVLDITVQVGRTGKLTPVARLKPVFVGGTTISN 364 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 +LHNE++++ + I++GD V+V RAG+VIP++V +I R DA+ F Sbjct: 365 VSLHNEEFLQNM-----------GIKIGDTVVVHRAGDVIPEIVRVIPELRPKDARDFVM 413 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P FCP+C S ++ K C+GGL C AQ+ + + HFVSR A I+G+G++ Sbjct: 414 PEFCPVCGSHAYKEDGEKD------RHCSGGLFCRAQRAQSILHFVSRKAMGIDGIGEKL 467 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + + + ADI+ L + K+ + G S L SI + +L Sbjct: 468 AEQLIEHD----LVTTVADIYRL------TVDKLVGLDRMGQKSAEKLVASIEASKKTTL 517 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ERF++++ I VG AR+LA ++ + + + L V +G A+ Sbjct: 518 ERFLYAISIPEVGEATARNLASHFGALKPLEEA----------SLEQLQEVEDIGPSGAE 567 Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I+ F+ P NI + L+ + V G + V TGTL + R +A + Sbjct: 568 NILHFFAEPANIAVINDLMDRGVVWEEGTGTSGQELPLNGLTFVLTGTLPTLSRDEASDI 627 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + G VS +S+KT ++ G++ GSKL KA+ LGV I++E + ++ Q Sbjct: 628 IRKAGGKVSGSVSKKTSYVLAGESAGSKLAKAEALGVNIIDEPELFKMINQ 678 >gi|254226208|ref|ZP_04919802.1| DNA ligase [Vibrio cholerae V51] gi|125621244|gb|EAZ49584.1| DNA ligase [Vibrio cholerae V51] Length = 669 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 249/708 (35%), Positives = 398/708 (56%), Gaps = 51/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L+ L + + H YY P I D+EYD L R + A P+L S+ P+ ++ Sbjct: 6 QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + V H IP LSL+ ++ +L F R+ ++ F EPK+DG Sbjct: 63 GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G AA RGDG +GE+++ +R I +IP R+ + P +EVRGEV++ K Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253 F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + E+ A Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ LQ+ Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NATL Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ FP+ Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTH 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+CQS V R G+ VA RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L+ + T ++ G S N+ D++NK + +L +F Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A +LA+++LS + Q I VP VG ++A + Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLQ 561 Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ + Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|238897965|ref|YP_002923645.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|257096312|sp|C4K4K4|DNLJ_HAMD5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|229465723|gb|ACQ67497.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 702 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 251/731 (34%), Positives = 406/731 (55%), Gaps = 73/731 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++++ L + +H+ Y+ P I D+EYDAL + +P+L +P+ P K+ Sbjct: 6 EKINQLRDVLKHHEYLYHVNDAPEITDAEYDALLEKLREWESQYPELM---NPDSPTQKV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ------------------- 119 G + + VTH +P LSL+ +++ + F R+ + Sbjct: 63 GASPSTAFKPVTHQVPMLSLDNVFDEKGFLAFNKRVSERLEAESSAQKASLNPLVRDSDQ 122 Query: 120 -----KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 K ++ F E K+DG +++ YEKG+ AA RG+G GE+++ IR I +IP Sbjct: 123 KNRSEKNVQEALTFCCELKLDGLAVSLIYEKGELTQAATRGNGFQGENITHNIRTIQSIP 182 Query: 175 -RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDI 232 R+ +P+ IE+RGEVY+ + F LN + A K ++NPRNAA+G LR+L+P Sbjct: 183 LRLKGKALPQRIEIRGEVYMPQAGFEKLNKQARANHEKIFSNPRNAAAGSLRQLDPHITA 242 Query: 233 TRYLNFFVHGLGK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R LNFF +G+G + + + L +++ G PV++ + ++++Y E+ Sbjct: 243 QRPLNFFCYGVGLLEGGVLPQSHIQRLMQLKAWGLPVHDRITLCTGAEQVMAFYQEIAQA 302 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R+TL +DIDG+V KVD+ LQ++LG A++PRW + KF ++ +T++L ++ Q+GRTG Sbjct: 303 RATLGFDIDGIVIKVDDVLLQEKLGFLAKAPRWATAFKFPAQEKTTQVLGVEFQVGRTGA 362 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 LTPVARLEPV +GGAL++NA LHN D I L +R+GD V+V+RAG+VIP Sbjct: 363 LTPVARLEPVELGGALVSNANLHNADEIARL-----------GLRIGDTVVVRRAGDVIP 411 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++V++I+ R + FP CPIC+S R G+ V RCTGGL C AQ+ E Sbjct: 412 QIVNVIIESRPQNTVEIIFPHHCPICKSVAKR----IEGEAVI--RCTGGLFCPAQRKEA 465 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 LKHFV+R A +IEGLG + + + ++ PAD+F L ++ K+ ++ Sbjct: 466 LKHFVARRALDIEGLGDKIIHQLVDKK----YVQNPADLFHL------TSEKLLSLKRMR 515 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL +S+ K + + RF+++LGIR VG A +LA Y+ + Sbjct: 516 EKSAQNLLNSLKKSQKTTFARFLYALGIREVGETTAANLALYF----------GQLDLLR 565 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEKNVSSEIE 648 D +L +VP VG+++A+ +V+F+ N + I A+E++L P + + Sbjct: 566 KADIETLKKVPDVGEVVAKNLVDFFGNEHHQQVISALESVLDWPDPE---PIEKPNHPFR 622 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 +K +V TG+L R + ++ LGA VS +S+KTD +I G+NPGSK +KA++ G+KI Sbjct: 623 DKTVVLTGSLNAFTRDDLKAHLISLGAKVSGSVSKKTDFLIAGENPGSKAQKAEKSGIKI 682 Query: 709 MNEEQFLFLLQ 719 MNE + + L+ Sbjct: 683 MNEPELIEFLK 693 >gi|229529935|ref|ZP_04419325.1| DNA ligase [Vibrio cholerae 12129(1)] gi|229333709|gb|EEN99195.1| DNA ligase [Vibrio cholerae 12129(1)] gi|327483693|gb|AEA78100.1| DNA ligase [Vibrio cholerae LMA3894-4] Length = 669 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 250/708 (35%), Positives = 397/708 (56%), Gaps = 51/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L+ L + + H YY P I D+EYD L R + A P+L S+ P+ ++ Sbjct: 6 QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + V H IP LSL+ ++ +L F R+ Q ++ F EPK+DG Sbjct: 63 GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHSA--FCCEPKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G AA RGDG +GE+++ +R I IP R+ + P +EVRGEV++ K Sbjct: 121 VSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253 F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + E+ A Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ +++ G P+ + + + ++Y ++ R L Y+IDG+V KVD+ LQ+ Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQLQE 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NATL Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ FP+ Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+CQS V R G+ VA RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L+ + T ++ G S N+ D++NK + +L +F Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A +LA+++LS + Q I VP VG ++A + Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLQ 561 Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ + Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|317495223|ref|ZP_07953593.1| DNA ligase [Gemella moribillum M424] gi|316914645|gb|EFV36121.1| DNA ligase [Gemella moribillum M424] Length = 663 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 250/711 (35%), Positives = 406/711 (57%), Gaps = 54/711 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++E+ L ++ + YY P I D+EYD L ++ + + +P+ N Sbjct: 1 MEHIKEEIFKLVALLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEQEYPEFILD---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + KV H +P LSL ++IEDLR F +RI + D+SI + E K Sbjct: 58 PTQRVGDRVLDEFEKVIHKVPMLSLSNTFSIEDLRDFDSRISKL---SSDDSIEYICELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+I YE GK V AA RGDG GE+V+ I+ I +IP+ +L + EVRGEVY+ Sbjct: 115 IDGLAISINYENGKLVSAATRGDGMVGENVTENIKTIFSIPK--TLKTKKSFEVRGEVYL 172 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251 K F LN E +ANPRNAA+G LR+L+ + IT R L+ F++ + I Sbjct: 173 PKKSFELLNKEREENNEVLFANPRNAAAGSLRQLD-SKITAKRRLSAFIYSVVGDENI-- 229 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q L +G PVN + T +V Y + + LPY+IDG+V KV+ +SL Sbjct: 230 NSQKMALTVAADVGLPVNPNFKLCKTIDEVVDYIMYWEEHKQDLPYEIDGIVIKVNSYSL 289 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+++G +SPRW ++KF E++ +T+LLDI++ +GRTGI+TPVA L P+NI G+ ++ A Sbjct: 290 QEEIGSTQKSPRWATAYKFPEEELATKLLDIELSVGRTGIITPVAVLNPINISGSTVSKA 349 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN+D I L DI +GD V+VK+AGE+IPKVV ++ R +++ + P Sbjct: 350 SLHNKDIIDEL-----------DIHIGDMVVVKKAGEIIPKVVRVVEELRLANSEKYVMP 398 Query: 432 SFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP C+S+ ++ +P T RC C Q + ++ HF SR+A NIEGLG + Sbjct: 399 NICPSCESKTFTKEGDPFT-------RCLNP-DCPEQNIRKIIHFASREALNIEGLGDKV 450 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++ I+ D+F+L R + ++ GD SV NL ++I + SL Sbjct: 451 VATLYEKG----IIKHTIDLFSLDRNKLVELERM------GDKSVDNLLNAIENSKQSSL 500 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++ IF+LGI +VG + + LA+YY + NF++ + L+ +P +G I A+ Sbjct: 501 DKVIFALGILNVGKKAGKILAEYYKNLTNFSKATVD----------ELLELPDIGLITAE 550 Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +IV++ N N+ + L++ ++P KN+ + K +V TG L ++ R++A+EY Sbjct: 551 SIVDYLSNDNNLRFINELIEIGMNPQYEIQNKNIDNIFSGKTIVLTGKLVELTRNEAKEY 610 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + GA V+ ++ KTD +I G+ GSKL KA+QLG+++++E++F+ ++++ Sbjct: 611 LERFGAKVTGSVTSKTDYVIAGEKAGSKLAKAEQLGIQVLSEDEFIDIMKE 661 >gi|264678823|ref|YP_003278730.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2] gi|262209336|gb|ACY33434.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2] Length = 708 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 256/717 (35%), Positives = 396/717 (55%), Gaps = 52/717 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E ++++L ++ YY P + D EYD + ++ +A+ A+P L P+ P Sbjct: 27 ESVTSKVAALRAQLHQWAHEYYVLDTPTVPDGEYDRVYQQLEALEGAYPALV---TPDSP 83 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRK--FITRIYR-FWQKKDDNSIFFTLE 131 ++ G + L V H++P LS++ + E F R+ + + +I + E Sbjct: 84 TQRVIGAVLDGLTPVRHAVPMLSIQTETDNEATGAIAFDQRVRKELGLDESAAAIEYVAE 143 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRG 189 PK DG + +RYE G+ V A RGDG GEDV+ IR I IP LS ++P ++EVRG Sbjct: 144 PKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLTLSAGRDVPPVVEVRG 203 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV+++K D LN A G K +ANPRNAA+G +R+L+ R L+FF +GLG+ + Sbjct: 204 EVHMAKADLDKLNARQQAAGAKTFANPRNAAAGSVRQLDSNIAAQRPLSFFAYGLGEITP 263 Query: 249 IFAKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G Y MLQ ++ GFPV V A +V+++ + + R+ LPY+IDG+V Sbjct: 264 PQQGGPDFGTHYAMLQTLKSWGFPVAPQVSIALGASELVAFHERIGAERANLPYEIDGVV 323 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKV+ +LQ+QLG ++R PRW ++HK+ ++ T + ID+Q+GRTG LTPVARL PV + Sbjct: 324 YKVNSLALQRQLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGKLTPVARLAPVQV 383 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++TNATL N I+ + +RVGD+V+V+RAG+VIP+VV + ER Sbjct: 384 GGVVVTNATLSNLFDIR-----------KKGVRVGDQVIVRRAGDVIPEVVGRVPGERPA 432 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 F P CPIC S VVR+ K A HRCTGGL C AQ+ E + HF R A +I Sbjct: 433 YVPNFRMPKTCPICGSEVVRE------KGEANHRCTGGLFCGAQRKEAILHFAHRRAMDI 486 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG + +D ++ +R+ D++ L + + + + S N+ ++ Sbjct: 487 EGLGDKLVDQLVDAQ----VVRVLPDLYRL------GLSSLAALDRMAEKSAQNVLAALE 536 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K ++ +L+RF+F LGIR+VG AR LAK++ +++ I+ + ++ L++V Sbjct: 537 KSKSTTLQRFLFGLGIRNVGESTARDLAKHF-------GKLDAIMDASVEE---LLQVKD 586 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG ++A +I F+ P N VE L V G + + +V TGTL + Sbjct: 587 VGPVVADSIHTFFAQPHNREVVEQLRACGVHWEEGEPAEKAPQILAGLTVVLTGTLPTLG 646 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A++ + GA VS +S+KT ++ G GSKL KA++LGV +++E L LL+ Sbjct: 647 RDAAKDMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLDEAGMLALLR 703 >gi|114776845|ref|ZP_01451888.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1] gi|114552931|gb|EAU55362.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1] Length = 670 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 248/707 (35%), Positives = 391/707 (55%), Gaps = 59/707 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ H+ YY P+I D+EYD L R +++ +L + P +G + Sbjct: 14 LRSQLREHNYRYYILDAPVISDAEYDRLLRELESLE---AELGEPVPADSPTRTVGAPPS 70 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 TH LSL ++ ++ F+ RI + ++ F +EPK+DG + +RY Sbjct: 71 QVFTTRTHGEALLSLANAFSAGEVEAFVRRI---GETLPATTLSFIVEPKVDGLAVNLRY 127 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEVRGEVYISKNDFL 199 E+G AA RGDG +GEDV+ +R I IP +V + +P ++EVRGE+Y+S+ F Sbjct: 128 EQGSLTIAATRGDGTTGEDVTDNVRTIGDIPWQLKQVDGIELPTVLEVRGEIYMSREAFA 187 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEML 258 ALN A G +P+ANPRNAA+G LR+L+ +R L FF +G G A Q ++L Sbjct: 188 ALNARQDAEGAQPFANPRNAAAGSLRQLDARVTASRRLGFFAYGAGLGGRAIASSQSQLL 247 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 +++ GF V A+ G+++ Y +++ R +PY+IDG+VYK+DEF+LQ ++G Sbjct: 248 ERLAGFGFAVQK-TACADDLEGLLATYQQLQQQRPDMPYEIDGVVYKLDEFALQDRMGAV 306 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ARSPRW I+HKF ++ +T + DI Q+GRTG++TPVA +EPV +GG +++ ATLHN D Sbjct: 307 ARSPRWAIAHKFPAEEVTTTVKDIIWQVGRTGVITPVADMEPVAVGGVVVSRATLHNIDE 366 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV---VDIIVNERHPDAQPFSFPSFCP 435 +K + + G RV+V+RAG+VIP+V VD+ P A P+ CP Sbjct: 367 LK-----------RKQVYAGARVIVRRAGDVIPEVVRAVDVDAQAMMPKA-----PAQCP 410 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C + + R G++ A RC+GGL+CSAQ ERL+HFVSR A +IEG+G + + Sbjct: 411 VCGASLFR----LEGEV--AIRCSGGLSCSAQLTERLRHFVSRGAMDIEGMGDKLIARLV 464 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + AD++ + G G+ +TNL SI + + L RF+ Sbjct: 465 DEG----CLNDIADLYEF------DYASLHEWQGMGEKKITNLQLSIERSKQRPLARFLH 514 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIRHVG+ A +LA ++ + Q D +L+ VP VG +A +I+ F Sbjct: 515 ALGIRHVGSATAAALATHFADLELLMQA----------DEEALLAVPDVGPEVAGSILSF 564 Query: 616 YQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++ N ++ LL V+P + +++ + K +V TG+ I+R AQE + LG Sbjct: 565 FREQHNRDVIDRLLAAGVTPEAPQQQQH-DHPLAGKTVVLTGSFVAIKRRTAQEQLRALG 623 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 S +S++TD++I G+ GSKL KA++LG+++ +E Q L L + Sbjct: 624 VRPSGSVSKQTDLVIAGEKAGSKLTKARELGIEVADEAQLLSWLNWH 670 >gi|160875869|ref|YP_001555185.1| DNA ligase, NAD-dependent [Shewanella baltica OS195] gi|190359285|sp|A9L5Z1|DNLJ_SHEB9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160861391|gb|ABX49925.1| DNA ligase, NAD-dependent [Shewanella baltica OS195] gi|315268060|gb|ADT94913.1| DNA ligase, NAD-dependent [Shewanella baltica OS678] Length = 685 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 255/716 (35%), Positives = 394/716 (55%), Gaps = 63/716 (8%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ E A + + +L Q ++ H+ YY P I DSEYD L +R + +P L ++ Sbjct: 12 EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P ++GG ++TH P LSL+ ++ D F R+ + F Sbjct: 72 SPT---QRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRV-----TDKVGEVSFC 123 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVR Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG-- 244 GE ++ K F ALND A K + NPRNAA+G LR+L+ + IT R L F+ + LG Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLD-SKITAARSLAFYAYALGVV 242 Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 S AK +E LQ+++ G P+++ ++ + YY ++ + RS L ++IDG+V Sbjct: 243 EPDSHPLAKTHFEQLQQLKSWGLPISSEIKVCAELSQVYDYYKDILTRRSDLAFEIDGVV 302 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++ + Q++LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV + Sbjct: 303 MKVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 362 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHN D I L I+VGD V+++RAG+VIP++V I+ R Sbjct: 363 GGVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPE 411 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 A FP CP+C S V R G+ VA RC+GGL C AQ+ E +KHF SR A +I Sbjct: 412 TATDIVFPHNCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDI 465 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + ++ E ++ PAD+F L T ++ G S TNL +I Sbjct: 466 DGMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIE 515 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +L RF+++LGIR VG A +LA ++ S A + + L V Sbjct: 516 AAKTTTLARFLYALGIREVGEATAANLAAHFASLD--ALRVATV--------EQLTEVED 565 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGT 657 VG ++AQ + F+ P N+ ++AL+ + G H + + ++ + V TGT Sbjct: 566 VGAVVAQHVAHFFAQPHNLEVIDALI-----AAGVHWPAIEAPSADAQPLKGQTWVLTGT 620 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 L ++ R+ A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+M+E++ Sbjct: 621 LNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676 >gi|299529801|ref|ZP_07043234.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44] gi|298722215|gb|EFI63139.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44] Length = 708 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 256/717 (35%), Positives = 396/717 (55%), Gaps = 52/717 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E ++++L ++ YY P + D EYD + ++ +A+ A+P L P+ P Sbjct: 27 ESVTSKVAALRAQLHQWAHEYYVLDTPTVPDGEYDRVYQQLEALEGAYPALV---TPDSP 83 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRK--FITRIYR-FWQKKDDNSIFFTLE 131 ++ G + L V H++P LS++ + E F R+ + + +I + E Sbjct: 84 TQRVIGAVLDGLTPVRHAVPMLSIQTETDNEATGAIAFDQRVRKELGLDESAAAIEYVAE 143 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRG 189 PK DG + +RYE G+ V A RGDG GEDV+ IR I IP LS ++P ++EVRG Sbjct: 144 PKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLTLSAGRDVPPVVEVRG 203 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV+++K D LN A G K +ANPRNAA+G +R+L+ R L+FF +GLG+ + Sbjct: 204 EVHMAKADLDKLNARQQAAGAKTFANPRNAAAGSVRQLDSNIAAQRPLSFFAYGLGEITP 263 Query: 249 IFAKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G Y MLQ ++ GFPV V A +V+++ + + R+ LPY+IDG+V Sbjct: 264 PEQGGPDFGTHYAMLQTLKSWGFPVAPQVSIALGASELVAFHERIGAERANLPYEIDGVV 323 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKV+ +LQ+QLG ++R PRW ++HK+ ++ T + ID+Q+GRTG LTPVARL PV + Sbjct: 324 YKVNSLALQRQLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGKLTPVARLAPVQV 383 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++TNATL N I+ + +RVGD+V+V+RAG+VIP+VV + ER Sbjct: 384 GGVVVTNATLSNLFDIR-----------KKGVRVGDQVIVRRAGDVIPEVVGRVPGERPA 432 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 F P CPIC S VVR+ K A HRCTGGL C AQ+ E + HF R A +I Sbjct: 433 YVPNFRMPKTCPICGSEVVRE------KGEANHRCTGGLFCGAQRKEAILHFAHRRAMDI 486 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG + +D ++ +R+ D++ L + + + + S N+ ++ Sbjct: 487 EGLGDKLVDQLVDAQ----VVRVLPDLYRL------GLSSLAALDRMAEKSAQNVLAALE 536 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K ++ +L+RF+F LGIR+VG AR LAK++ +++ I+ + ++ L++V Sbjct: 537 KSKSTTLQRFLFGLGIRNVGESTARDLAKHF-------GKLDAIMDASVEE---LLQVKD 586 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG ++A +I F+ P N VE L V G + + +V TGTL + Sbjct: 587 VGPVVADSIHTFFAQPHNREVVEQLRACGVHWEEGEPAEKAPQILAGLTVVLTGTLPTLG 646 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A++ + GA VS +S+KT ++ G GSKL KA++LGV +++E L LL+ Sbjct: 647 RDAAKDMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLDEAGMLALLR 703 >gi|304411949|ref|ZP_07393560.1| DNA ligase, NAD-dependent [Shewanella baltica OS183] gi|307303283|ref|ZP_07583038.1| DNA ligase, NAD-dependent [Shewanella baltica BA175] gi|304349809|gb|EFM14216.1| DNA ligase, NAD-dependent [Shewanella baltica OS183] gi|306913643|gb|EFN44065.1| DNA ligase, NAD-dependent [Shewanella baltica BA175] Length = 685 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 255/716 (35%), Positives = 393/716 (54%), Gaps = 63/716 (8%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ E A + + +L Q ++ H+ YY P I DSEYD L +R + +P L ++ Sbjct: 12 EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P ++GG ++TH P LSL+ ++ D F R+ + F Sbjct: 72 SPT---QRVGGLALAKFDQITHPKPMLSLDNAFDEADFSAFHKRV-----TDKVGEVSFC 123 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVR Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG-- 244 GE ++ K F ALND A K + NPRNAA+G LR+L+ + IT R L F+ + LG Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLD-SKITAARSLAFYAYALGVV 242 Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 S AK +E LQ+++ G PV++ ++ + YY ++ + R L ++IDG+V Sbjct: 243 EPDSHPLAKTHFEQLQQLKSWGLPVSSEIKVCAELSQVYDYYKDILTRRGDLAFEIDGVV 302 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++ Q++LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV + Sbjct: 303 MKVNDIDQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 362 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHN D I L I+VGD V+++RAG+VIP++V I+ R Sbjct: 363 GGVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPE 411 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 A FP CP+C S V R G++VA RC+GGL C AQ+ E +KHF SR A +I Sbjct: 412 TATDIVFPHNCPVCGSLVER----LEGEVVA--RCSGGLFCEAQRKEAIKHFASRKALDI 465 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + ++ E ++ PAD+F L T ++ G S TNL +I Sbjct: 466 DGMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIE 515 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +L RF+++LGIR VG A +LA ++ S A + + L V Sbjct: 516 AAKTTTLARFLYALGIREVGEATAANLAAHFASLD--ALRVATV--------EQLTEVED 565 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGT 657 VG ++AQ + F+ P N+ ++AL+ + G H + + ++ + V TGT Sbjct: 566 VGTVVAQHVAHFFAQPHNLEVIDALI-----AAGVHWPAIEAPSAEAQPLKGQTWVLTGT 620 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 L ++ R+ A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+M+E++ Sbjct: 621 LNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676 >gi|332529208|ref|ZP_08405172.1| DNA ligase [Hylemonella gracilis ATCC 19624] gi|332041431|gb|EGI77793.1| DNA ligase [Hylemonella gracilis ATCC 19624] Length = 738 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 261/744 (35%), Positives = 401/744 (53%), Gaps = 91/744 (12%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 ++ +H YY P I D+EYD L + AI A P+L P+ P ++ G++ L Sbjct: 31 QLHHHAHRYYVLDAPEIPDAEYDRLFQELQAIEAAHPEL---RTPDSPTQRVIGQVLDGL 87 Query: 87 FKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKDDNS-IFFTLEPKIDGTMITIRY 143 V H++P LS+ E E R F TR+ + + S + + E K DG I +RY Sbjct: 88 LPVRHAVPMLSIDTETDTTPEGARAFDTRVRKALGLGEGASPVEYAAELKFDGLAINLRY 147 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIP-------------------- 182 E+G V AA RGDG +GEDV+ IR I IP R+L+ +P Sbjct: 148 ERGVLVQAATRGDGETGEDVTQNIRTINQIPLRLLAPTLPAARGSLPPSPSNAQDALEPG 207 Query: 183 ------------------EIIEVRGEVYISKNDFLALND---EMIAVG---RKPYANPRN 218 E++EVRGEVY+ ++DF ALN+ E IA G K + NPRN Sbjct: 208 VRFALGLPGGETMTSWPPEVLEVRGEVYMRRDDFEALNERQREKIAAGAKGEKTFINPRN 267 Query: 219 AASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276 A+G +R+L+P R L+F+ +GLG+ +++ +G PV Sbjct: 268 TAAGAVRQLDPAMAAQRPLSFYAYGLGEARGWTLPATHGQVMDAFVAMGLPVCEHRALGA 327 Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336 +V ++ M ++R +LP+DIDG+VYKV+ +LQ+QLG ++R PRW ++HK+ ++ Sbjct: 328 GAEALVDFHARMGALRDSLPFDIDGVVYKVNSLALQQQLGFKSREPRWAVAHKYPAQEML 387 Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396 T + I++Q+GRTG LTPVA+L PV +GG +TNATLHNE L+A K D+R Sbjct: 388 TTVQAIEVQVGRTGKLTPVAKLAPVFVGGVTVTNATLHNE-----LEARRK------DVR 436 Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 VGD V+V+RAG+VIP+VV ++ ++R P A F+ P+ CP+C S VR+ A H Sbjct: 437 VGDTVIVRRAGDVIPEVVGVLPDKRPPGAPEFTMPTSCPVCGSAAVREEGE------ADH 490 Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516 RCTGGL CSAQ+ + L HF R A +IEGLG + +D E ++ D++ R Sbjct: 491 RCTGGLFCSAQRKQALLHFAQRRAMDIEGLGDKLVDQLVDGE----VVKTLPDLY---RL 543 Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 TS +E + + S N+ D++ K + +L RF++ LGIRHVG A+ LA+++ Sbjct: 544 GLTSLAALERM---AEKSAQNIVDALQKSKQTTLPRFLYGLGIRHVGESTAKDLARHF-- 598 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPS 635 +++ I+ + +L+ P VG ++AQ+I F++ N VE L V + Sbjct: 599 -----GQLDAIMDAGVE---ALMEAPDVGPVVAQSIRTFFEQAHNREVVEQLRACGVQWA 650 Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 G + + V TGTL + R +A+E + GA V+ +S+KT ++ G+ G Sbjct: 651 EGEPAPRALLPLAGQTFVLTGTLPTLSREEAKEMLEAAGAKVAGSVSKKTSYVVAGEEAG 710 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719 SKL+KA++LGV +++E + LL+ Sbjct: 711 SKLDKARELGVPVIDEAKMQALLK 734 >gi|169825829|ref|YP_001695987.1| DNA ligase [Lysinibacillus sphaericus C3-41] gi|254781361|sp|B1HTW6|DNLJ_LYSSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|168990317|gb|ACA37857.1| DNA ligase [Lysinibacillus sphaericus C3-41] Length = 667 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 254/716 (35%), Positives = 405/716 (56%), Gaps = 61/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ EL+ L E Y YY KP++ DS YD L A+ A P L P+ Sbjct: 4 IEQRIAELNKLLHEYGY---AYYVLDKPVVADSVYDQLLHELIALEEANPSLIF---PDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + KVTH P LSL +N DL++F ++ ++ + + E K Sbjct: 58 PTQRVGGTVVEGFKKVTHDYPMLSLSNAFNEADLQEFDRKV----RQAIGDHFSYVCELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+++YE G FV A RGDG GE+++A ++ I IP L L P IEVRGE Y+ Sbjct: 114 IDGLAISLKYENGVFVQGATRGDGVVGEEITANLKTIHAIP--LRLKEPITIEVRGEAYM 171 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA- 251 K F LN + G + +ANPRNAA+G LR+L+P +R L+ F++ +G EI+ Sbjct: 172 PKKSFEKLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEIYGI 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 G EML + LGFP N ++ +T ++++ R L Y+IDG+V KVD ++ Sbjct: 232 DGHAEMLDYLEDLGFPSNKERQRCSTIEEVMAFIEHWTENRPHLAYEIDGIVIKVDRYAQ 291 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG A+SPRW I++KF ++ T LLDID+ +GRTG++TP A L PV + G + A Sbjct: 292 QDELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRA 351 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED I+ +DIR+GD V++++AG++IP+VV +++ +R ++ PF P Sbjct: 352 SLHNEDLIR-----------DKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPENSVPFEMP 400 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S ++R G++ A RC AC AQ E +K+FVSR+A NI+GLG + + Sbjct: 401 KNCPVCDSELIR----IEGEV--ALRCVNP-ACFAQIAESIKYFVSRNAMNIDGLGDKVV 453 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + +++ I +D++ L Q ++ G+ S TNL ++I + S+E Sbjct: 454 EQLLRAD----LIHDVSDLYHLTIEQLVELERM------GEKSATNLVNAIQASKENSME 503 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + LGIRHVG + A+ +++ + S + ++A + L+ + +GD +A + Sbjct: 504 RLLIGLGIRHVGEKAAKIVSEQFGSME-------AVMAATEE---QLVAIYEIGDKMASS 553 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQRHKA 666 +VE++ N +E L EV ++ K V + + K +V TG L+++ R++A Sbjct: 554 LVEYFSNDDARAVIER-LAEVGVNMTFKGKKVEVVVGDNPFAGKTIVLTGKLEQLTRNEA 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + +LG V+ +S+KTD++I G++ GSKL KA+QLG+++ NE+ L++Q N Sbjct: 613 KAKIEELGGTVTGSVSKKTDLVIAGEDAGSKLAKAEQLGIEVWNEDN---LIEQLN 665 >gi|148269959|ref|YP_001244419.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1] gi|170288644|ref|YP_001738882.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2] gi|190359298|sp|A5IKX0|DNLJ_THEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781442|sp|B1LA51|DNLJ_THESQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147735503|gb|ABQ46843.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1] gi|170176147|gb|ACB09199.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2] Length = 688 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 259/705 (36%), Positives = 395/705 (56%), Gaps = 51/705 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E+ L +EI YH+ YY + P+I D EYD L RR + +P+L P+ P ++ Sbjct: 12 EEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELERMYPELV---TPDSPTQRV 68 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ V HS+P LSL+ +N E++ +F R+ + Q+ + + + E KIDG Sbjct: 69 GGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKTLQEAE---VEYVAELKIDGVS 125 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I +RYE GKFV A RGDG GEDVS ++ + +IP L L P +EVRGE+Y+ ++F Sbjct: 126 IALRYENGKFVLGATRGDGIEGEDVSENVKTVRSIP--LRLRKPVTVEVRGEIYMPVDEF 183 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 LNDE G P+ANPRNAA+G LR+LN + R L+ F++ + K Q+E Sbjct: 184 KRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSFIYYVVHPENYGLKTQWEA 243 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ ++ LGF VN + ++ Y+ E + + L Y +DG+V KV+ F Q+ LGE Sbjct: 244 LQFLKELGFKVNPHSKLCKNIQEVIDYWREWEERKKELDYWVDGVVVKVNRFDFQRILGE 303 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +++PRW I+ KF +QA TR+LD+ IQ+GRTG+LTPVA LEPV + G ++ A+LHN + Sbjct: 304 TSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELEPVQLAGTIVKRASLHNFE 363 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI+ +DIR+GD V V++AG +IP++V I R + P CP+C Sbjct: 364 YIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGSEKEIKPPDKCPVC 412 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +V + L+P+ A RC C A+ L+ VSR+A +IEGLG++ +D Sbjct: 413 GGKVGK-LDPEE----VALRCLNP-HCPAKLKRALRTLVSREALDIEGLGEKLIDRLVD- 465 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A ++ ADIF L T + G G ++ + I + + L + I L Sbjct: 466 ---AGLVKDIADIFYL-----TPFDLAQLGPGIGQRTIAKILQEIEEAKKRPLHKLITGL 517 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI VG + A+ LA+++ S + A + + +L +P +G IA++IVE+++ Sbjct: 518 GIPMVGQKTAKILAEHFKSLEAIA----------DASYETLKDIPGIGPEIAKSIVEYFR 567 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQRHKAQEYVTQLGA 675 NP+ +E L K + E+ + +I K L F TGTL+ R + E+ +LGA Sbjct: 568 NPKTREIIEKLKK---AGVKLEERVMKLDI-LKGLTFAVTGTLKNFTREEIVEFFEKLGA 623 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V +SR TD +IVG+NPGSK EKA+ L VK M+EE+FL +++ Sbjct: 624 KVVNSVSRNTDYLIVGENPGSKYEKAKMLKVKTMSEEEFLEFVRK 668 >gi|183179445|ref|ZP_02957656.1| DNA ligase [Vibrio cholerae MZO-3] gi|183012856|gb|EDT88156.1| DNA ligase [Vibrio cholerae MZO-3] Length = 669 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 249/708 (35%), Positives = 398/708 (56%), Gaps = 51/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L+ L + + H YY P I D+EYD L R + A P+L S+ P+ ++ Sbjct: 6 QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + V H IP LSL+ ++ +L F R+ ++ F EPK+DG Sbjct: 63 GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G AA RGDG +GE+++ +R I +IP R+ + P +EVRGEV++ K Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253 F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + E+ A Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ LQ+ Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NATL Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ FP+ Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+CQS V R G+ VA RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L+ + T ++ G S N+ D++NK + +L +F Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A +LA+++LS + Q I VP VG ++A + Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLQ 561 Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ + Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|188533249|ref|YP_001907046.1| NAD-dependent DNA ligase LigA [Erwinia tasmaniensis Et1/99] gi|254781330|sp|B2VE40|DNLJ_ERWT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188028291|emb|CAO96149.1| DNA ligase [Erwinia tasmaniensis Et1/99] Length = 670 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 249/715 (34%), Positives = 411/715 (57%), Gaps = 53/715 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + +++ L + +++ Y+ P + D+EYD L + A P+L ++ P Sbjct: 1 MESLQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAAHPELLTTDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ ++ E R F R+ + DD + F E K Sbjct: 60 --QRVGAAPLSAFEQVRHEVPMLSLDNAFDEESYRAFNKRVQDRLKSSDD--LTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++A +R I IP R+ NIPE +EVRGEV+ Sbjct: 116 LDGLAVSLLYEQGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + F +N++ G+K +ANPRNAA+G LR+L+P R L FF +GLG + E+ Sbjct: 176 MPLAGFEKMNEQARRGGQKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + LQ+ + G PV++ VR ++ ++ +Y+++++ R L +DIDG+V KVD Sbjct: 236 -PRSHMARLQQFKAWGLPVSDRVRLCHSPSDVLDFYHQVEADRPALGFDIDGVVIKVDSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 EQQEQLGFVARAPRWAVAFKFPAQEQITTVRDVEFQVGRTGAITPVARLEPVLVAGVMVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GDRV+++RAG+VIP+V+ ++ E A+ Sbjct: 355 NATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVMSVV--ESAEGARDVI 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G++VA RCTGGL C AQ+ LKHFVSR A +I+G+G++ Sbjct: 402 FPTHCPVCGSDVER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGEK 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D E ++ PA++F L + K+ + G S N+ D++ K + + Sbjct: 456 IIDQLVDKE----YVKNPAELFEL------TAGKLTGLDRMGPKSAQNVVDALAKAKQTT 505 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGI VG A +LA ++ + + ++A + D +LI VP VG ++A Sbjct: 506 FARFLYALGISEVGEATAANLAAHFGT-------LEALMAADID---TLITVPDVGKVVA 555 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS----IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F N + L+++ + + + + S K +V TG+L + R Sbjct: 556 SHVRNFLDEESNREIIRLLVEKAGVNWPDVVVVKAEEIDSPFAGKTVVLTGSLSILSRDD 615 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+E + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E++ + LL + Sbjct: 616 AKERLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEQEMMRLLGE 670 >gi|153001196|ref|YP_001366877.1| DNA ligase, NAD-dependent [Shewanella baltica OS185] gi|166216241|sp|A6WPS5|DNLJ_SHEB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151365814|gb|ABS08814.1| DNA ligase, NAD-dependent [Shewanella baltica OS185] Length = 685 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 255/716 (35%), Positives = 393/716 (54%), Gaps = 63/716 (8%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ E A + + +L Q ++ H+ YY P I DSEYD L +R + +P L ++ Sbjct: 12 EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P ++GG ++TH P LSL+ ++ D F R+ + F Sbjct: 72 SPT---QRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRV-----TDKVGEVSFC 123 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVR Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG-- 244 GE ++ K F ALND A K + NPRNAA+G LR+L+ + IT R L F+ + LG Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLD-SKITAARSLAFYAYALGVV 242 Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 S AK +E LQ+++ G P+++ ++ + YY + + RS L ++IDG+V Sbjct: 243 EPDSHPLAKTHFEQLQQLKSWGLPISSEIKVCAELSQVYDYYKNILTRRSDLAFEIDGVV 302 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++ + Q++LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV + Sbjct: 303 MKVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 362 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHN D I L I+VGD V+++RAG+VIP++V I+ R Sbjct: 363 GGVTVSNATLHNADEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPE 411 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 A FP CP+C S V R G+ VA RC+GGL C AQ+ E +KHF SR A +I Sbjct: 412 TATDIVFPHNCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDI 465 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + ++ E ++ PAD+F L T ++ G S TNL +I Sbjct: 466 DGMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIE 515 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +L RF+++LGIR VG A +LA ++ S A + + L V Sbjct: 516 AAKTTTLARFLYALGIREVGEATAANLAAHFASLD--ALRVATV--------EQLTEVED 565 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGT 657 VG ++AQ + F+ P N+ ++AL+ + G H + + ++ + V TGT Sbjct: 566 VGAVVAQHVAHFFAQPHNLEVIDALI-----AAGVHWPAIEAPSADAQPLKGQTWVLTGT 620 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 L ++ R+ A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+M+E++ Sbjct: 621 LNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676 >gi|50084060|ref|YP_045570.1| DNA ligase [Acinetobacter sp. ADP1] gi|81393600|sp|Q6FDW0|DNLJ_ACIAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49530036|emb|CAG67748.1| DNA ligase [Acinetobacter sp. ADP1] Length = 676 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 260/713 (36%), Positives = 391/713 (54%), Gaps = 55/713 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L Q I+ H+ YY +P I D+EYD L + A+ +P+L +++ P N++G Sbjct: 10 QMRQLIQLIAKHNHAYYVMDQPSITDNEYDQLFHQLKALEAEYPELTQADTPT---NRVG 66 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G+ VTH++P LSL ++N EDL F RI ++ + I + +E K+DG I Sbjct: 67 GQALSKFETVTHAVPMLSLGNVFNQEDLFAFARRIE---ERLPNQQIQYDVELKLDGLAI 123 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYISKN 196 ++ YE G V RGDG +GED++ ++ I +P+ L S+ P +EVRGEV + K Sbjct: 124 SLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKHLQHHSVETPRFLEVRGEVLMPKQ 183 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ- 254 F LN A G K +ANPRNAA+G LR+L+P +R L F+ +G+ + G Sbjct: 184 GFERLNAANEAKGEKTFANPRNAAAGSLRQLDPAIAASRPLAFYAYGIAQCEPHHGLGSM 243 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ + LGF + ++ + Y +++ R L +IDG+V KVD+ Q+Q Sbjct: 244 HESLQWLTQLGFEIAERQFLCSSIQEVQQCYEQIQQERPDLAVEIDGMVIKVDDLKQQQQ 303 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R PRW ++KF + A T + +ID Q+GRTG LTPVARL+PV +GG ++N TLH Sbjct: 304 LGFLSREPRWATAYKFPAEVAMTTVENIDWQVGRTGTLTPVARLQPVFVGGVTVSNVTLH 363 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I L D+RVGDRV V R+G+VIPKV + R A+ P C Sbjct: 364 NIGEIHRL-----------DVRVGDRVSVYRSGDVIPKVEKVWPEFRPELAEIVQLPEQC 412 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGLG + ++ Sbjct: 413 PVCSSPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESL 466 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + ++ ADI+ L ++ T I G+ SV NL D+I + +L RFI Sbjct: 467 LHLD----LLKDVADIYHLHEHREQLLT----IEKMGEKSVQNLMDAIEASKKTTLARFI 518 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG AR LA + + Q D +L + P VGDI A+ I + Sbjct: 519 YALGIRGVGETTARMLANTFQTLDALKQA----------DIEALKKTPDVGDITAEWIYD 568 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F+ NI ++ LL + G H + + V TGTL+ + R +A + + Sbjct: 569 FFLAEHNIEVLDRLL-----AAGIHWDAPLAPTRQPLNGESWVVTGTLETMGRDEATQRL 623 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 LGA VS +S KT ++ G+ GSKL+KA++L +++MNE++FL L QY+ Sbjct: 624 QALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLQIRVMNEQEFLAFLAQYSA 676 >gi|212634787|ref|YP_002311312.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3] gi|254781417|sp|B8CN91|DNLJ_SHEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212556271|gb|ACJ28725.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3] Length = 668 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/707 (35%), Positives = 398/707 (56%), Gaps = 54/707 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ L Q+++ H+ YY P I D EYD L +R + P+ A+++ P ++G Sbjct: 7 EILELTQQLNLHNYHYYVDDNPTIPDVEYDRLLKRLIELETQSPEFAKADSPT---QRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE ++TH P LSL+ +++ + F +RI K ++ + EPK+DG + Sbjct: 64 GEALAKFEQITHLKPMLSLDNVFDETEFNGFHSRI----TDKVGTALSYCCEPKLDGLAV 119 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198 +I Y G F AA RGDG +GE+++ +R I +IP ++ N P ++EVRGEV + F Sbjct: 120 SIVYRDGVFERAATRGDGQTGENITENVRTIKSIPLKLRGDNFPPLVEVRGEVIMPHKAF 179 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG---KTSEIFAKGQ 254 ALN+ A G K + NPRNAA+G LR+L+ +R L F+ + LG S A Sbjct: 180 NALNERARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESWELADSH 239 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 Y L+++R G PV+ V+ ++ ++ YYN+++ RS+L ++IDG+V KV++ + Q Sbjct: 240 YGQLEQLRSWGVPVSQEVKVCDSVTEVMDYYNDIQQRRSSLDFEIDGVVLKVNQIAHQLS 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A++PRW + KF ++ T L +D Q+GRTG +TPVARL+PV +GG ++NATLH Sbjct: 300 LGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLH 359 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L ++VGD ++++RAG+VIP++V I+ ++R DAQ FP C Sbjct: 360 NADEIARL-----------GVKVGDTIIIRRAGDVIPQIVAIVADKRPDDAQDIVFPERC 408 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V R G+ VA RC+GGL C AQ+ E +KHF SR A +I+G+G + ++ Sbjct: 409 PVCDSEVER----IEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E + PAD+F L ++ T +E + G S T L +I + + RF+ Sbjct: 463 IDKE----LVESPADLFKL---TASAMTMLERM---GMKSATKLVAAIEVAKETTFARFL 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG A +LA Y+ + A I+V VG I+A + Sbjct: 513 YALGIREVGEATAANLAAYF----------KTLDALKGASAEEFIKVDDVGAIVAAHLAH 562 Query: 615 FYQNPRNICAVEALLK-EVS-PSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F P N+ ++ L+ VS P+I E+++S ++ + V TGTL ++ R+ A+ + Sbjct: 563 FLAQPHNLEVIDKLIAVGVSWPAIEEVAEEDLS--LKGQTWVLTGTLTQLNRNDAKAQLQ 620 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V+ +S+ TD ++ G GSKL KAQ+LGVK+++EE + +L Sbjct: 621 ALGAKVAGSVSKNTDCLVAGAAAGSKLTKAQELGVKVIDEEALIAIL 667 >gi|223936891|ref|ZP_03628800.1| DNA ligase, NAD-dependent [bacterium Ellin514] gi|223894460|gb|EEF60912.1| DNA ligase, NAD-dependent [bacterium Ellin514] Length = 680 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 247/714 (34%), Positives = 398/714 (55%), Gaps = 55/714 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A+ + L +EI HD+ YY +KP I D YD L + FPDL S+ P+ Sbjct: 5 EAKTRHTQLVEEIRGHDNAYYVEAKPTISDQAYDRLYHELLDLEKKFPDLITSDSPS--- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ GE V H P +SL+ ++ +D+R F+ R+ R + ++ + LEPK+D Sbjct: 62 QRVSGEPLKEFKPVHHLSPMMSLDNTYSQQDVRDFVGRVQRLLP---NETLEWILEPKVD 118 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVY 192 G I ++YEKG FV A RGDG +G+DV++ ++ I +I L + +P+++E+RGEVY Sbjct: 119 GVAINLKYEKGVFVCGATRGDGTTGDDVTSNLKTIRSIAGKLKASGRKLPDVVEIRGEVY 178 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF- 250 + K F +N E +A G +P+ANPRN+A+G L++L+P + R L+ V+GLG +F Sbjct: 179 LPKAAFTKINAERVAAGEEPFANPRNSAAGSLKQLDPRIVAKRPLDVIVYGLG----VFE 234 Query: 251 ----AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K E+L ++ G + + ++ NE+ +R Y+ DG V K+ Sbjct: 235 GAERPKEHDEVLAWLKSAGCKTPEKTWKCCSADELIDAINELDQLRRKFTYETDGAVIKL 294 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + F+L++++G +++PRW I++K+A +QA T+L I IQ+GRTG LTPVA LEPV + G+ Sbjct: 295 NSFALRERIGFTSKAPRWAIAYKYAAEQAETKLKAITIQVGRTGALTPVAELEPVFLAGS 354 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I+ ATLHNED ++ +DIRVGD V +++AGEVIP VV +++ +R Sbjct: 355 TISRATLHNEDELR-----------RKDIRVGDTVTIEKAGEVIPAVVGVVLTKRTGKEV 403 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F FP+ CP C S+V R + G RC AC AQ R++H+ +R A +IEG Sbjct: 404 QFQFPTHCPECGSKVARTEGTENGAAGVVWRCLNA-ACPAQIRGRIEHWCARGAMDIEGG 462 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G+ + +R +D+++L Q + + G+ S N D + + Sbjct: 463 GEALVSQLVTK----GLVREVSDLYSLTLDQ------VAGLERMGEKSAQNFLDGVQASK 512 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + R +F LGI HVGA +A+ L + + + +++I A + + L V +G+ Sbjct: 513 TRDMWRLLFGLGILHVGAGVAKRLGRRFTT-------LDDIFAASQE---QLTEVEDIGE 562 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI---ENKKLVFTGTLQKIQR 663 +IA +IV+++Q P+N +E LL++ + ++ + K V TGTL ++R Sbjct: 563 VIAHSIVQWHQEPKNRELIE-LLRKAGLNFNSELYKPAAALGHFAGKTFVLTGTLPTLKR 621 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +A + LG VS +S+KTD I+ G++ GSKLEKAQ+LGVKI++E FL L Sbjct: 622 EEAAAKIEALGGKVSGSVSKKTDYIVAGEDAGSKLEKAQKLGVKIIDEAAFLKL 675 >gi|92112835|ref|YP_572763.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043] gi|122990589|sp|Q1QZP4|DNLJ_CHRSD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91795925|gb|ABE58064.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043] Length = 691 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 254/724 (35%), Positives = 402/724 (55%), Gaps = 63/724 (8%) Query: 14 IEQA-RKELSSLEQEISYHDDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 I QA R+ +L Q++ DD YQY P I D+EYDAL R ++ P+L + Sbjct: 4 IPQAVRERADTLHQQL---DDANYQYYVEDDPRITDAEYDALLRELQSLEAEHPEL---K 57 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++G +VTH++P LSL+ ++ +L F+ R+ + D +++ F Sbjct: 58 TPDSPTQRVGAAPAERFEEVTHAVPMLSLDNAFDDAELAAFVKRVADKLEC-DGDTLAFC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188 EPK+DG + + YE G+ V A RGDG +GEDV+ +R I +IP ++ +IP +IEVR Sbjct: 117 CEPKLDGLAVALVYENGRLVQGATRGDGRTGEDVTLNLRTIRSIPLKLRGDSIPPLIEVR 176 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-T 246 GEVY+ + F ALND G K +ANPRNAA+G LR+L+ + R L F + + + Sbjct: 177 GEVYMRHSGFEALNDRARENGDKVFANPRNAAAGSLRQLDSSIAAARPLEFCAYQVARLE 236 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E A + L+++R LGF + + G++ + + + R+ L YDIDG V KV Sbjct: 237 GEDDAHSHSDYLKRLRTLGFRTSPLLDVVKGERGVIDFCHRLGEQRNGLDYDIDGAVIKV 296 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D Q++LG +R+PRW I++K+ ++ +T L D+ Q+GR G LTPVA+LEPV + G Sbjct: 297 DSLRDQRELGFVSRAPRWAIAYKYPAQEQTTTLNDVVFQVGRVGTLTPVAKLEPVQVAGV 356 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + NATLHN D I+ L +R+GD V+V+RAG+VIP++V ++ ++R + Sbjct: 357 TVANATLHNMDEIERL-----------GVRIGDTVIVRRAGDVIPQIVGVVESQRPATTR 405 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C S+ R G++ A RC+GGL C AQ+ E LKHF SR A +I+GL Sbjct: 406 AIEMPEHCPVCGSQTER----LEGEVAA--RCSGGLFCPAQRKEALKHFASRRALDIDGL 459 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ +D + E ++ PAD+F L+ ++ + + S NL +++ + Sbjct: 460 GEKLIDLLVERE----WVKTPADLFRLE------AERLAELPRLAEKSANNLVNALEAAK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RFI+++GIR VG A SLA+++ S Q ++ + D VG Sbjct: 510 RTTLARFIYAIGIREVGEATAASLARHFGSLQALSEASLEALEAVED----------VGP 559 Query: 607 IIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 ++A+ I F++ P N +E L +EV + GR + + + V TGTL+ Sbjct: 560 VVARHIHTFFRQPHNQETLEDLQGVGVTWEEVEIA-GRPQP-----LAGQTWVLTGTLES 613 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R + + LGA VS +S+KT ++ G+ GSKLEKAQ LGV++++E +FL L Sbjct: 614 MTRDDGKARLQALGAKVSGSVSKKTAGVVAGEAAGSKLEKAQNLGVEVIDEREFLQRLAH 673 Query: 721 YNTT 724 + + Sbjct: 674 WESA 677 >gi|317127163|ref|YP_004093445.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522] gi|315472111|gb|ADU28714.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522] Length = 670 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 252/709 (35%), Positives = 404/709 (56%), Gaps = 57/709 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I+Q L+++ + +YH YY +P + D+EYD L + A+P+ R + P+ Sbjct: 6 IKQEIDRLTNILNDYAYH---YYVLDQPKVSDAEYDQLLHELTKLEEAYPEWKRDDSPS- 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GG+ KV H +P LSL +N E+LR F R+ + + ++ E K Sbjct: 62 --ERVGGQPLEHFSKVQHDVPMLSLSNAFNEEELRDFDRRVRQGL----GHEPTYSCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG +T++YE+G+FV A RGDG GED+++ ++ +P+IP L L IEVRGE ++ Sbjct: 116 IDGLAVTLKYEQGRFVQGATRGDGTVGEDITSNLKTVPSIP--LRLKEAVTIEVRGEAFM 173 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 K F+ LN+ G + +ANPRNAA+G LR+L+P R L+ F++ +GK Sbjct: 174 PKRSFIRLNEAKEKNGEQLFANPRNAAAGSLRQLDPKIAAKRSLDIFIYSVGKVEGEDIP 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + L ++ LGF N + T ++ Y S R+ LPY+IDG+V KVD + Q Sbjct: 234 SHHGALNYVKELGFKTNEHQKHCKTIDEVIDYCESWLSKRADLPYEIDGIVIKVDALADQ 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG A+SPRW ++KF ++ T LLDI++ +GRTG++TP A LEPV++ G + A+ Sbjct: 294 EQLGFTAKSPRWATAYKFPAEEVVTTLLDIELSVGRTGVITPTAILEPVSVAGTTVQRAS 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I+ L D+++GD+V +K+AG++IP+VV+++V +R + + FS P+ Sbjct: 354 LHNEDLIREL-----------DLKLGDKVTIKKAGDIIPEVVNVLVEQRTGEERDFSMPT 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S ++R G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 403 QCPECHSELIR----IEGEV--ALRCVNP-KCPAQIREGLIHFVSRNAMNIDGLGERVIT 455 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F + I AD++ L+R+ + N+ G+ SV NL +I + SLE+ Sbjct: 456 QLFNHK----LIEDVADLYKLERQL------LLNLERMGEKSVDNLLRAIEASKENSLEK 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRHVGA+ A++LA+++ N +I N + L + VG+ +A A+ Sbjct: 506 LLFGLGIRHVGAKAAKTLAQHF----NTIDQIQNATRED------LEAINEVGEKMADAV 555 Query: 613 VEFYQNPRN---ICAVEAL---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 V +++ P I +EAL L+ P+I + ++ K +V TGT++++ R A Sbjct: 556 VTYFETPEVKELISELEALDINLEYKGPNINVSDDANNAYFSGKTVVLTGTMEQMARGDA 615 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 ++ + G V+ +S KTD++I G+ GSKL+KAQ L ++I +E +FL Sbjct: 616 KKEIEARGGNVTGSVSSKTDLLIAGEKSGSKLKKAQDLNIEIWDEARFL 664 >gi|290967938|ref|ZP_06559488.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L] gi|290782077|gb|EFD94655.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L] Length = 668 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 247/708 (34%), Positives = 390/708 (55%), Gaps = 60/708 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQ + L+ ++++++ YY P + D EYD L R + + +P P+ P Sbjct: 6 EQEKVRLAEIKKQLAELSYQYYTLDAPTVSDYEYDMLYRELETLEKKYPQWV---TPDSP 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +IG +++ + K TH P LSL +++ E++R+F R+ Q+ + + +E KI Sbjct: 63 TQRIGSKISGTFAKYTHDRPMLSLGDVFSDEEVREFDARVR---QELPGERVAYVVELKI 119 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + + YEKG+FV RGDGH GED++ +R I T+P +S ++ + +E+RGEVY+ Sbjct: 120 DGLAVNLIYEKGRFVRGVTRGDGHVGEDITHNVRTIRTVPLHIS-DLSDHVEIRGEVYMP 178 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 F ALN++ A +P+ANPRNAA+G LR+ +P R L+FF + LG TS+ + Sbjct: 179 IPAFRALNEQRSADELEPFANPRNAAAGSLRQQDPQVAAERKLSFFAYALGGTSDWRPES 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q +LQ +R L FPVN R +++Y + + R TL Y DG+V KV+ F+ Q+ Sbjct: 239 QEALLQTLRNLHFPVNREYRTFTDIQDVIAYIHTWDTRRDTLSYATDGMVIKVNSFAQQQ 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG + PRW I++KF +QA T++L I + +GRTG+LTP A L+PV + G + +ATL Sbjct: 299 MLGNTVKIPRWAIAYKFPPEQARTKVLQIRVGVGRTGVLTPTAELQPVRLAGTTVKSATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNE+YI+ +DIR+GD VL+++AGE+IP+VV ++ R F P+ Sbjct: 359 HNEEYIR-----------SKDIRIGDTVLIQKAGEIIPEVVRPVMEARTGREVVFVMPTQ 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG----KQ 489 CP C +V R+ AA RC AC A E++ HFVSR A NIEGLG KQ Sbjct: 408 CPSCGGQVQREAGE------AAVRCVNP-ACPAMVAEQIAHFVSRPAMNIEGLGTAIVKQ 460 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D I AD+F L + + I + GFG+ S NL SI + Sbjct: 461 LIDHGL--------IHDVADLFLLHKEE------ILPLEGFGEKSADNLLQSIAAAKEAG 506 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R +F+LGIR VGA+ R LA+ + S Q A D +L+ V +G IA Sbjct: 507 LGRLLFALGIRFVGAKAGRILAETFGSMQALAAA----------DIATLMAVETIGPRIA 556 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKA 666 +++ ++ + + + ++ L + +G EK +++ + + +V TG LQ R +A Sbjct: 557 ESVAAYFADSQKVRVIQKL---AAAGVGMTEKKRQLINTSFDGEIVVLTGKLQHFSRKEA 613 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + ++ G +A +++KT +++ G +PGSK +KA+ LG + EE+F Sbjct: 614 EAAISARGGSCTATVTKKTTLVVCGADPGSKYDKAKALGTPTIGEEEF 661 >gi|239815926|ref|YP_002944836.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110] gi|239802503|gb|ACS19570.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110] Length = 694 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 250/715 (34%), Positives = 396/715 (55%), Gaps = 60/715 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +++ H YY P + D+EYD L +R A+ +P+L P+ P ++GG++ Sbjct: 14 LSEQLHKHAHLYYVLDAPELPDAEYDRLFQRLQALEAEYPEL---RTPDSPTQRVGGKVL 70 Query: 84 LSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMIT 140 KV H +P LS+ +I F R+ + +D + + E K DG + Sbjct: 71 EGFVKVRHKVPMLSIRTETDISPGGASAFDARVRKELGLAEDGPQVEYVCELKFDGLAMN 130 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 +RYE G V AA RGDG GE+V+ IR + IP L+ P ++EVRGE+Y+ + DF A Sbjct: 131 LRYENGVLVQAATRGDGEVGEEVTQNIRTVREIPLRLNGKAPPVVEVRGEIYMKRADFEA 190 Query: 201 LND---EMIAVGRKP---YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 LN+ E IA G+K + NPRNAA+G +R+L+P R L+FF +GLG+ + G Sbjct: 191 LNERQREKIAAGQKNEKVFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGLGEVTPASEGG 250 Query: 254 -----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ LQ+ GFPV +A +++++ + R LPYDIDG+VYKVD Sbjct: 251 PEFPTQFDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYDIDGVVYKVDS 310 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ++LG +R PRW ++HK+ ++ T +L I++Q+GRTG LTPVA+L PV +GG + Sbjct: 311 IELQRRLGFVSREPRWAVAHKYPAQEQITEVLGIEVQVGRTGKLTPVAKLAPVFVGGVTV 370 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE-RHPDAQP 427 TNATLHNED + +D+RVGD+V+V+RAG+VIP+VV ++ P+ + Sbjct: 371 TNATLHNEDEAR-----------RKDVRVGDKVIVRRAGDVIPEVVGVVPESLARPEGER 419 Query: 428 ---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 F+ P CP+C S +R+ G++ +RCTGGL C+AQ+ E + HF +R A +I+ Sbjct: 420 GLLFTMPHQCPVCGSEALRE----EGEV--DYRCTGGLFCAAQRKEAILHFAARRAVDID 473 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG + ++ A IR D++ L + + D S NL D++ Sbjct: 474 GLGDKLVEQLVD----ANLIRTLPDLYKL------GFATLAGLDRMADKSAKNLVDALEA 523 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L RF+F LGIRHVG A+ L+K++ +++ I+ + + L+ V V Sbjct: 524 SKKTTLPRFLFGLGIRHVGESTAKDLSKHF-------GKLDAIMDASEE---QLLEVNDV 573 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 G ++AQ++ F+ P N VE L ++ G + V TGTL + R Sbjct: 574 GPVVAQSLRTFFDQPHNREVVEQLRACGLTWEEGEPAARAPKPLAGLTFVITGTLPTLSR 633 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A++ + GA V+ +S+KT ++ G+ GSKL+KA+++GV++++E + L LL Sbjct: 634 DEAKDKLEAAGAKVAGSVSKKTSYLVAGEEAGSKLDKAREIGVEVIDEARMLELL 688 >gi|254514186|ref|ZP_05126247.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3] gi|219676429|gb|EED32794.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3] Length = 675 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 252/705 (35%), Positives = 391/705 (55%), Gaps = 52/705 (7%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 +L +++ + YY +P + D +YDA R + P+L +DP+ P ++G Sbjct: 13 ALREQLERWNHQYYVLDEPTVPDQDYDAALRELQKLETEHPEL---QDPSSPTQRVGAAP 69 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI-FFTLEPKIDGTMITI 141 + V H +P LSL+ ++ E+L F+ R+ + D S+ EPK+DG +++ Sbjct: 70 LSAFESVAHPMPMLSLDNAFSDEELGAFLQRVM---DRLDVESLPELVAEPKLDGIAVSL 126 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLA 200 Y G AA RGDG GED++ +R I ++P R+ P+++E+RGE+++ + F A Sbjct: 127 IYRDGVLARAATRGDGTHGEDITLNVRTIGSVPLRLGGDACPDVVEIRGEIFMPRAGFEA 186 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEM 257 N+ G KP+ NPRNAA+G LR+L+ + IT R L F + G+ E + K +E+ Sbjct: 187 FNEYARRNGEKPFVNPRNAAAGSLRQLD-SQITARRPLEFCAYASGQHPESQWPKSHWEV 245 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ G P++ + ++ V YY + R +L +DIDG+VYKV++F Q +LG Sbjct: 246 LQLFASWGVPISRYAERLSSLEECVDYYQRLGDQRDSLSFDIDGIVYKVNDFEAQSKLGF 305 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 AR+PRW I+ KF ++A T++ ++ Q+GRTG +TPVARLEPV +GG ++NATLHN D Sbjct: 306 VARAPRWSIARKFPAQEAVTKVTGVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNMD 365 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 + G ++ GD V+V+RAG+VIP+VV +I R PDA + PS CP+C Sbjct: 366 EV-----------GRLELHDGDTVVVRRAGDVIPQVVSVIEERRLPDAALIAAPSACPVC 414 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S V R T RC+GGL C AQ ++HF SR A +I+GLG++ ++ + Sbjct: 415 ASAVQRVAGEAT------LRCSGGLVCPAQLKAAVRHFASRRAMDIDGLGEKLVEQMVDT 468 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 +R AD+F L++R + ++ G+ S T L +I R +L RFIF+L Sbjct: 469 G----LVRDVADLFRLEQRSLLTLERM------GEKSATKLLAAIESSRRTTLARFIFAL 518 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG A +LA Y+ S I I A + D SL+ VP VG ++AQ + F+ Sbjct: 519 GIREVGEATALALATYFGS-------IEAIRAADLD---SLLEVPDVGPVVAQHLRAFFS 568 Query: 618 NPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 N +E LL V P++ +N +E + V +G L+ R +A+E + LGA Sbjct: 569 AQANQQVLERLLAAGVVWPAVS-PAQNAQGPLEGQTWVVSGKLESQSRDEAEEALRALGA 627 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S +S KT +++ G GSKL KA+ LGV+I++E++FL L + Sbjct: 628 RTSKSVSGKTSVLLAGPGAGSKLAKAESLGVEIVDEQEFLARLAK 672 >gi|15640987|ref|NP_230618.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822692|ref|ZP_01975359.1| DNA ligase [Vibrio cholerae B33] gi|229510900|ref|ZP_04400379.1| DNA ligase [Vibrio cholerae B33] gi|229518021|ref|ZP_04407465.1| DNA ligase [Vibrio cholerae RC9] gi|229608449|ref|YP_002879097.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MJ-1236] gi|254291846|ref|ZP_04962629.1| DNA ligase [Vibrio cholerae AM-19226] gi|254848101|ref|ZP_05237451.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10] gi|255744753|ref|ZP_05418704.1| DNA ligase [Vibrio cholera CIRS 101] gi|262151242|ref|ZP_06028378.1| DNA ligase [Vibrio cholerae INDRE 91/1] gi|81545212|sp|Q9KTD1|DNLJ_VIBCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|9655431|gb|AAF94133.1| DNA ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126519773|gb|EAZ76996.1| DNA ligase [Vibrio cholerae B33] gi|150422206|gb|EDN14170.1| DNA ligase [Vibrio cholerae AM-19226] gi|229344736|gb|EEO09710.1| DNA ligase [Vibrio cholerae RC9] gi|229350865|gb|EEO15806.1| DNA ligase [Vibrio cholerae B33] gi|229371104|gb|ACQ61527.1| DNA ligase [Vibrio cholerae MJ-1236] gi|254843806|gb|EET22220.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10] gi|255737784|gb|EET93178.1| DNA ligase [Vibrio cholera CIRS 101] gi|262030933|gb|EEY49561.1| DNA ligase [Vibrio cholerae INDRE 91/1] Length = 669 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 248/708 (35%), Positives = 398/708 (56%), Gaps = 51/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L+ L + + H YY P I D+EYD L R + A P+L S+ P+ ++ Sbjct: 6 QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + V H IP LSL+ ++ +L F R+ ++ F EPK+DG Sbjct: 63 GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G AA RGDG +GE+++ +R I +IP R+ + P +EVRGEV++ K Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253 F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + E+ A Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ LQ+ Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NATL Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ FP+ Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+CQS V R G+ VA RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L+ + T ++ G S N+ D++NK + +L +F Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A +LA+++LS + Q I VP VG ++A + Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLQ 561 Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ + Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S+ TD++ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 622 ALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|71064896|ref|YP_263623.1| NAD dependent DNA ligase [Psychrobacter arcticus 273-4] gi|123734475|sp|Q4FUW9|DNLJ_PSYA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71037881|gb|AAZ18189.1| probable NAD dependent DNA ligase [Psychrobacter arcticus 273-4] Length = 691 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 265/710 (37%), Positives = 391/710 (55%), Gaps = 51/710 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + Q R + +L+Q H+ YY PI+ DSEYD L+R + +PDL + P+ Sbjct: 26 VTQMRTFIDTLKQ----HNYAYYVLDNPILEDSEYDQLRRSLLELEEEYPDLVQ---PDS 78 Query: 74 PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P+N++G +M L F +VTH IP LSL ++ DLR F+ R+ S + +E Sbjct: 79 PINQVG-DMPLPAFTQVTHDIPMLSLGNVFEYNDLRDFMRRVNDRLSVAQ-QSPEYEMEL 136 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EIIEVRGEV 191 K+DG ++++Y GKF A RGDG +GED++ + I +P L+ E++EVRGEV Sbjct: 137 KLDGLAVSLKYVHGKFTQAVTRGDGQTGEDITQNAKTIRNMPLWLADAADIELLEVRGEV 196 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 + K F LN K +ANPRNAA+G LR+L+P+ +R L F+ + + + Sbjct: 197 LMPKAGFERLNRLAAEKEEKTFANPRNAAAGSLRQLDPSVAASRPLAFYAYSVNQGLLDT 256 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q L ++ +GF V+ V + +YY + + R+ LP++IDG+V KV+ + Sbjct: 257 IDTQSAALAWIKDIGFSVS-AVEVVSNPREAQTYYESIIATRADLPFEIDGMVIKVNSLA 315 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG +R PRW ++KF + TRL ID Q+GRTG +TPV +LEPV +GG ++N Sbjct: 316 LQQQLGFLSREPRWATAYKFPAETVMTRLHAIDWQVGRTGQITPVGKLEPVKVGGVTVSN 375 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 TLHN I+ L D+R GD V V RAG+VIPKV + +R +++P Sbjct: 376 VTLHNFGEIQRL-----------DVRAGDMVSVHRAGDVIPKVTRVWHEQRPENSEPVQL 424 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S VV PK L RCTGGL C AQQ E L HFVSR A +I+GLG Sbjct: 425 PSTCPVCDSPVVL---PKDEALA---RCTGGLFCPAQQQEALIHFVSRRAMDIDGLGASW 478 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L FF+ ++ ADI+ L Q+ T + G+ SV N+ +I ++ +L Sbjct: 479 LISFFEHG----LVKTVADIYQLHNHQEELVT----LEKLGEKSVQNIISAIEASKHTTL 530 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI++LGIR VG A QN AQ+ ++ A + L+ P VG I A+ Sbjct: 531 SRFIYALGIRGVGETTA----------QNLAQQFGDLDALMSASIEKLLLTPDVGAITAE 580 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQE 668 +F++ P NI + A L+E + E+ VS ++ + V TG L + R +A+ Sbjct: 581 LAYKFFRAPHNIEVITA-LREAGVHWDKVEQVVSEGLPLDGQTWVITGALDSMARDEAKA 639 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA VS +S KT ++ GD GSK+ KA++LGVK++ EE+FL L+ Sbjct: 640 KLQALGAKVSGSISAKTTALLAGDKAGSKMAKAEKLGVKVVGEEEFLALV 689 >gi|300114089|ref|YP_003760664.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113] gi|299540026|gb|ADJ28343.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113] Length = 675 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 252/709 (35%), Positives = 394/709 (55%), Gaps = 53/709 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A+ + +L++ I+ +D YY P+I DSEYD L R + +P+L + P Sbjct: 7 AKDRIQALKELINNYDYAYYVMDNPLIPDSEYDRLIRELRVLEENYPELITLDSPT---Q 63 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFTLEPKID 135 ++G + L +V H +P LSL ++ +L F R+ R ++ D + EPK+D Sbjct: 64 RVGAKPIKFLGEVKHEVPMLSLNNAFHEGELVDFHRRVKARLGIERVD----YAAEPKLD 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194 G +++ Y+ G V A RGDG +GEDV+ IR IPT+ L P ++EVRGEVY+ Sbjct: 120 GLAVSLLYQDGVLVQGATRGDGVTGEDVTHNIRTIPTVSLCLRDEKAPSLLEVRGEVYMP 179 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAK 252 + F LN E I G KP+ NPRNAA+G LR+L+ +R L F +G+G+ + I Sbjct: 180 RKGFERLNREQIVKGEKPFVNPRNAAAGSLRQLDSRIAASRPLAIFCYGIGQVEQGILPD 239 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E+L +++ G + ++ G YY M +R LPY+IDG+V+KVD + Q Sbjct: 240 RHSEVLCQLKQWGLRILPHLQVVEGLAGCKKYYQHMLDMRDKLPYEIDGVVFKVDYLNQQ 299 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG AR+PRW +++KF ++ T++LDI++Q+GRTG LTPVA L+P+ +GG ++ AT Sbjct: 300 QTLGSLARAPRWALAYKFPAQEELTQILDIEVQVGRTGALTPVAWLQPIFVGGVTVSKAT 359 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNE G++ R +DIR+GD V V+RAG+VIP++V +++ ER P ++ F P Sbjct: 360 LHNE---------GEIRR--KDIRIGDTVYVRRAGDVIPEIVKVVLEERLPGSRLFQMPR 408 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S +V++ G+ +A RC+GGL C AQ+ E +KHF +R A +I GLG + ++ Sbjct: 409 QCPVCDSEIVKE----EGRAIA--RCSGGLYCPAQRKEAVKHFAARRAMDINGLGDKLVE 462 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 K I+ AD++ L + Q ++ G S NL ++I + ++ +L R Sbjct: 463 QLVKRG----LIKDVADLYDLTKEQLVGLERM------GQKSAANLINAIQQSKHTTLPR 512 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG A+ L K + S A + D +G ++A I Sbjct: 513 FLYALGIREVGEATAQVLTKEFGSLAALASASEERLQQVVD----------IGPVVAAHI 562 Query: 613 VEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 F++ N C V L+E P + H+ + + + V TGTL+ + R +A+E Sbjct: 563 AAFFRQLHN-CQVIQSLQEAGVCWPEL-EHKAPIVRPLSGRTFVLTGTLESMTREQAKER 620 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S TD +I+G PGSKL KA+ L + I++E FL LL Sbjct: 621 LQALGGKVSGSVSPHTDYLIIGAKPGSKLIKARNLEITILDETNFLNLL 669 >gi|157371681|ref|YP_001479670.1| NAD-dependent DNA ligase LigA [Serratia proteamaculans 568] gi|190359284|sp|A8GHF2|DNLJ_SERP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157323445|gb|ABV42542.1| DNA ligase, NAD-dependent [Serratia proteamaculans 568] Length = 673 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 248/717 (34%), Positives = 412/717 (57%), Gaps = 58/717 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P + D+EYD L A+ A P+L ++ P Sbjct: 1 MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMGELRALESAHPELITADSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ +++ E F R+ + K + + F E K Sbjct: 60 --QRVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQD--RLKSSDPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE++++ +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N+E K +ANPRNAA+G +R+L+P R L FF +G+G + E+ Sbjct: 176 MPQAGFEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + ++ L + + G PV++ ++ ++++Y +++ R+ L +DIDG+V K+D+ Sbjct: 236 -PRSHWQRLMQFKDWGLPVSDRAKRCTGSDEVLAFYRQVEQDRTQLGFDIDGVVVKIDDI 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+ LG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 DLQETLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVLVAGVIVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD V+V+RAG+VIP+VV +I R DA+ Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVIAERRPADAREIL 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP+C S V R G+ VA RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPQHCPVCGSDVER----VEGEAVA--RCTGGLICAAQRKEALKHFVSRRALDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + E ++ PAD+F L S + + G S NL +++ K + + Sbjct: 458 IIEQLVEKE----YVKNPADLFRL------SAGILTGLDRMGPKSAQNLVNALEKSKQTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA ++ + ++ ++A D +L VP VG+I+A Sbjct: 508 FARFLYALGIREVGEATAANLAAHFGT-------LDKLLAA---DIEALKEVPEVGEIVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKI 661 + F N ++ L VS IG + + + S K +V TG+L ++ Sbjct: 558 KHTRHFLDEELNQQVIQEL---VSDEIGINWPAPVVIVAEEIDSPFAGKTVVLTGSLSQL 614 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 615 SRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIEVIDEAEMIRLL 671 >gi|260363295|ref|ZP_05776162.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030] gi|308113593|gb|EFO51133.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030] Length = 655 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 248/697 (35%), Positives = 388/697 (55%), Gaps = 49/697 (7%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 + YH YY P I D+EYD L R I PDL + P+ ++GG+ Sbjct: 1 MHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPS---QRVGGKPLSEFS 57 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMITIRYEKG 146 +VTH +P LSL+ ++ +L F R + SI + EPK+DG +++ YE G Sbjct: 58 QVTHEVPMLSLDNAFDDSELDSFHKRAQ---DRIGGESIKQYCCEPKLDGLAVSLLYENG 114 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205 V AA RGDG +GE+++ +R I IP ++ + P +EVRGEV++ K F LN+ Sbjct: 115 ILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFMPKAGFEKLNELA 174 Query: 206 IAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAKGQYEMLQKMRC 263 G K + NPRNAA+G LR+L+ +R L+F+ + +G A YE +++ Sbjct: 175 RQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLAASHYERFLQIKS 234 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 G P+ ++ ++ + +YY + R LPY+IDG+V K+D+ ++Q++LG AR+PR Sbjct: 235 WGLPMCPETKRVDSLADVKTYYQHILQRRDALPYEIDGVVIKIDDIAVQERLGFVARAPR 294 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++NATLHN D I+ L Sbjct: 295 WAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERL- 353 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 +++GD+V+++RAG+VIP+VV +I R A+ FP+ CP+C S V R Sbjct: 354 ----------QVKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVER 403 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 A RCTGGL C AQ+ + LKHFVSR A +++GLG + ++ E Sbjct: 404 IEGE------AVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDRE----M 453 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 + PAD+F L S + + G S N+ +++ K + +L RF++SLGIR VG Sbjct: 454 VETPADLFKL------SAGVLTVLERMGPKSAQNIVNALEKSKLTTLPRFLYSLGIREVG 507 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 A +LA+++ S + LI V +G ++A+ I F++ +N Sbjct: 508 EATAANLAQHFKSLEAIQAATEE----------QLIAVQDIGVVVAKHITTFFEEEQNQA 557 Query: 624 AVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 V+ LL + P + E+ +E K +V TGTL ++ R +A+E + LGA V+ + Sbjct: 558 VVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGRTEAKEALQSLGAKVTGSV 617 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S+KTDI+ G+N GSKL KAQ+LG++I E+ L L+ Sbjct: 618 SKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELI 654 >gi|229512467|ref|ZP_04401940.1| DNA ligase [Vibrio cholerae TMA 21] gi|229350548|gb|EEO15495.1| DNA ligase [Vibrio cholerae TMA 21] Length = 669 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 249/708 (35%), Positives = 398/708 (56%), Gaps = 51/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++L+ L Q + H YY P I D+EYD L R + A P+L S+ P+ ++ Sbjct: 6 QKLTELRQILHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + V H IP LSL+ ++ +L F R+ ++ F EPK+DG Sbjct: 63 GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G AA RGDG +GE+++ +R I +IP R+ + P +EVRGEV++ K Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253 F LN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + E+ A Sbjct: 181 FEVLNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ LQ+ Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQE 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NATL Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ FP+ Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+CQS V R G+ VA RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L+ + T ++ G S N+ D++NK + +L +F Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A +LA+++LS + Q I VP VG I+A + Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVIVASHLQ 561 Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ + Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S+ TD++ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 622 ALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|229542656|ref|ZP_04431716.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1] gi|229327076|gb|EEN92751.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1] Length = 668 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 259/707 (36%), Positives = 385/707 (54%), Gaps = 66/707 (9%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY +P + D+EYD L R I +A P+L P+ P ++G Sbjct: 12 ELRKLLNQYSYE---YYVLDRPSVPDAEYDRLLRELQEIENAHPELI---TPDSPTQRVG 65 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-----YRFWQKKDDNSIFFTLEPKI 134 GE KV H P LSL +N DLR F R+ YR+ + E KI Sbjct: 66 GEPLSGFAKVVHDTPMLSLANAFNEADLRDFDRRVRETAGYRYE---------YVCELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I+++YE G FV + RGDG GED++A +R + +IP L LN P IE RGE ++ Sbjct: 117 DGLAISLKYENGLFVQGSTRGDGTIGEDITANLRTVRSIP--LRLNEPVTIEARGECFMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F ALN G +P+ANPRNAA+G LR+L+P +R L+ F++ +G T+ + Sbjct: 175 KKSFEALNRIKEENGEEPFANPRNAAAGSLRQLDPKIAASRNLDTFMYAIGDTTGLDISA 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L ++ LG VN R ++ + E R LPY+IDG+V KV++++ + Sbjct: 235 HSEGLAYLKRLGLKVNKETRICRDIGEVLKFIAEWTEKRPALPYEIDGIVIKVNDYAQEA 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG +SPRW I++KF ++ T+L I++++GRTG++TP A L PV + G + ATL Sbjct: 295 ALGTTVKSPRWAIAYKFPAEEVVTKLTGIEVKVGRTGVVTPTAILNPVRVAGTTVQRATL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED I+ +DIR+GD V+VK+AG++IP+VV I R + Q FS PS Sbjct: 355 HNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVRPIPERRTGEEQAFSMPSH 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +VR + A RC C AQ E L HFVSR+A NIEGLG++ + Sbjct: 404 CPDCGSELVRLEDE------VALRCINP-NCPAQIREGLIHFVSRNAMNIEGLGEKVISQ 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F E I ADI+ L++ + ++ G+ SV+NL +I + SLE+ Sbjct: 457 LFAHE----LIHNVADIYRLKKEELLQLERM------GEKSVSNLLAAIEASKKNSLEKL 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIRHVGA+ A+ LA ++ + + ++ L +P +G+ +A +I Sbjct: 507 LFGLGIRHVGAKAAKILAAHFETMERLSKATRE----------ELEAIPDIGEKMADSIA 556 Query: 614 EFYQNPRNICAVEAL----LKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQE 668 +++N + V L + V R EK N S K +V TG L + R++A+E Sbjct: 557 AYFENEEALGLVRELAALGVNMVYKGPKRAEKRNADSPFAGKTVVLTGKLVNMTRNEAKE 616 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + LGA V+ +S+ TD++I G++ G+KL KA+QLG+++ +E FL Sbjct: 617 KLEALGANVTGSVSKNTDLVIAGEDAGTKLTKAEQLGIEVWDEAAFL 663 >gi|262165212|ref|ZP_06032949.1| DNA ligase [Vibrio mimicus VM223] gi|262024928|gb|EEY43596.1| DNA ligase [Vibrio mimicus VM223] Length = 682 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 256/727 (35%), Positives = 400/727 (55%), Gaps = 70/727 (9%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ + L L Q + H YY P I D+EYD L R + A P+L Sbjct: 9 ERFTMSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI--- 65 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDL----RKFITRIYRFWQKKDDNS 125 P+ P ++GG V H IP LSL+ ++ +L R+ RI Q Sbjct: 66 TPDSPSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSH---- 121 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184 F EPK+DG +++ YE G AA RGDG +GE+++ +R I +IP R+ + P Sbjct: 122 --FCCEPKLDGLAVSLLYENGVLTRAATRGDGATGENITENVRTINSIPLRLQGSDFPVR 179 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG 242 +EVRGEV++ K F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + Sbjct: 180 LEVRGEVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLD-SRITAQRPLAFYAYS 238 Query: 243 LG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 +G E+ A Y+ +++ G P+ + + + ++Y ++ R +L Y+ID Sbjct: 239 VGIIDGGEL-ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEID 297 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KVD+ LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEP Sbjct: 298 GVVIKVDDIQLQERLGFVARAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLEP 357 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GG ++NATLHN D I+ L + VGD V+++RAG+VIP++V +++ Sbjct: 358 VFVGGVTVSNATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLER 406 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R DA+P FP+ CP+CQS + R G+ VA RCTGGL C AQ+ E LKHFVSR A Sbjct: 407 RPIDAKPIVFPACCPVCQSEIER----IEGEAVA--RCTGGLICQAQRKEALKHFVSRKA 460 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +++GLG + ++ E + PAD+F L+ + T ++ G S N+ D Sbjct: 461 MDVDGLGDKVIEQLVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVID 510 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++NK + +L RF+++LGIR VG A +LA+++L+ AQ + LI Sbjct: 511 ALNKAKQTTLPRFLYALGIREVGEATALNLAQHFLTLDAIAQASMD----------QLIE 560 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLK--------EVSPSIGRHEKNVSSEIENKKL 652 VP VG ++A + F+ RN + L++ V+ SI S + K + Sbjct: 561 VPDVGGVVASHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIA-----ADSALAGKVV 615 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG+ ++ R+ A+ + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++++E+ Sbjct: 616 VLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQ 675 Query: 713 QFLFLLQ 719 + L+ Sbjct: 676 ALIDFLK 682 >gi|217972882|ref|YP_002357633.1| DNA ligase, NAD-dependent [Shewanella baltica OS223] gi|254781416|sp|B8EEK5|DNLJ_SHEB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|217498017|gb|ACK46210.1| DNA ligase, NAD-dependent [Shewanella baltica OS223] Length = 685 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 257/716 (35%), Positives = 395/716 (55%), Gaps = 63/716 (8%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ E A + + +L Q ++ H+ YY P I DSEYD L +R + +P L ++ Sbjct: 12 EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P ++GG ++TH P LSL+ ++ D F R+ + F Sbjct: 72 SPT---QRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRV-----TDKVGEVSFC 123 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVR Sbjct: 124 CEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVR 183 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG-- 244 GE ++ K F ALND A K + NPRNAA+G LR+L+ + IT R L F+ + LG Sbjct: 184 GEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLD-SKITAARSLAFYAYALGVV 242 Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 S AK +E LQ+++ G PV++ ++ + YY ++ + RS L ++IDG+V Sbjct: 243 EPDSHPLAKTHFEQLQQLKSWGLPVSSEIKVCAELSQVYDYYKDILTRRSDLAFEIDGVV 302 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++ Q++LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV + Sbjct: 303 MKVNDIDQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFV 362 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++NATLHN + I L I+VGD V+++RAG+VIP++V I+ R Sbjct: 363 GGVTVSNATLHNANEIARL-----------GIKVGDTVIIRRAGDVIPQIVAIVPERRPE 411 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 A FP CP+C S V R G+ VA RC+GGL C AQ+ E +KHF SR A +I Sbjct: 412 TATDIVFPHNCPVCGSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALDI 465 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + ++ E ++ PAD+F L T ++ G S TNL +I Sbjct: 466 DGMGDKVVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAAAIE 515 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +L RF+++LGIR VG A +LA ++ S A + + L V Sbjct: 516 AAKTTTLARFLYALGIREVGEATAANLAAHFASLD--ALRVATV--------EQLTEVED 565 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSE---IENKKLVFTGT 657 VG ++AQ + F+ P N+ ++AL+ + G H + S+E ++ + V TGT Sbjct: 566 VGAVVAQHVAHFFAQPHNLEVIDALI-----AAGVHWPAIEAPSAEAQPLKGQTWVLTGT 620 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 L ++ R+ A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+M+E++ Sbjct: 621 LNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDEDE 676 >gi|332977611|gb|EGK14379.1| NAD-dependent DNA ligase LigA [Psychrobacter sp. 1501(2011)] Length = 695 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 262/724 (36%), Positives = 399/724 (55%), Gaps = 57/724 (7%) Query: 9 IEALSIEQAR--KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I++L+ EQ ++ +L E+ H++ YY +P I D+EYD L+ + +PDL Sbjct: 17 IKSLNQEQQDIVAKMRTLITEVRKHNNAYYVMDEPTISDNEYDQLRLSLIELEERYPDLT 76 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 +S+ P +G S +V H IP LSL ++N E+L +F+ R+ + N Sbjct: 77 QSDSPTA---SVGDNPLPSFSQVQHDIPMLSLGNVFNKEELAEFMRRVNDRLSSNNKNPA 133 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-EII 185 + +E K+DG ++++Y+ G+FV RGDG +GED++ ++ I IP VL E++ Sbjct: 134 Y-EMELKLDGLAVSLKYQNGRFVRGVTRGDGQTGEDITQNVKTINNIPLVLEAAFDIEVL 192 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEV + K F LN E V K +ANPRNAA+G LR+L+P R L F+ + + Sbjct: 193 EVRGEVLMPKAGFERLNREAKQVDGKIFANPRNAAAGSLRQLDPAVAANRPLAFYAYSVN 252 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + Q E L ++ +GF V+ V+ N +YY + RS LP++IDG V Sbjct: 253 QGLPEHIVNQSEALDWLKEIGFTVS-AVKVVNDLEEAQAYYESVIEERSGLPFEIDGTVI 311 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG +R PRW ++KF + T+L I+ Q+GRTG +TPV +LEPV +G Sbjct: 312 KVDNLQLQSELGYLSREPRWATAYKFPAETVMTKLNAIEWQVGRTGQITPVGKLEPVQVG 371 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++N TLHN I+ L D+R GD V V RAG+VIPKV + R D Sbjct: 372 GVTVSNVTLHNIGEIQRL-----------DVRAGDTVSVHRAGDVIPKVTRVWHELRPED 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +QP + P+ CP+C S VV G+ +A RCTG L C AQQ E L HFVSR A +I+ Sbjct: 421 SQPVTLPTHCPVCDSPVVL----PEGEALA--RCTGELFCPAQQQEALIHFVSRKAMDID 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ L FF+ ++ ADI+ L++ ++ + N G+ SV NL +I Sbjct: 475 GLGERWLISFFEQ----GIVKTVADIYHLEQHREA----LINFEKLGEKSVNNLLAAIEN 526 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L RFI+++GI+ VG A++LAK++ ++ A + SL VP + Sbjct: 527 SKKTTLSRFIYAIGIKGVGETTAQNLAKHF----------GDLPALMDASIESLEAVPDI 576 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS------EIENKKLVFTGTL 658 G I A+ I +F++ N+ +EAL++ G H + V ++ + V TGTL Sbjct: 577 GTITAEQIYDFFRAKHNVEVIEALIE-----AGVHWEKVEQVVAEGLPLDGETWVITGTL 631 Query: 659 --QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + R A+ + LGA VS +S KT ++ G+ GSKL KAQQLGV+++ E +FL Sbjct: 632 VESGMSRDDAKSKLQALGAKVSGSVSAKTSALLAGEKAGSKLTKAQQLGVRVVEEAEFLQ 691 Query: 717 LLQQ 720 ++Q+ Sbjct: 692 MIQE 695 >gi|332766219|gb|EGJ96429.1| DNA ligase, NAD-dependent [Shigella flexneri 2930-71] Length = 647 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 247/686 (36%), Positives = 397/686 (57%), Gaps = 52/686 (7%) Query: 41 PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100 P I D+EYD L R + P+L P+ P ++G + ++ H +P LSL+ Sbjct: 4 PEIPDAEYDRLMRELRELETKHPELI---TPDSPTQRVGAAPLAAFSQIRHEVPMLSLDN 60 Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160 +++ E F R+ + K++ + + E K+DG ++I YE G V AA RGDG +G Sbjct: 61 VFDEESFLAFNKRVQD--RLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTG 118 Query: 161 EDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNA 219 ED+++ +R I IP ++ NIP +EVRGEV++ + F +N++ G K +ANPRNA Sbjct: 119 EDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNA 178 Query: 220 ASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276 A+G LR+L+P R L FF +G+G + E+ +LQ + G PV++ V Sbjct: 179 AAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQ-FKKWGVPVSDRVTLCE 237 Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336 + ++++Y++++ R TL +DIDG+V KV+ Q+QLG AR+PRW ++ KF ++ Sbjct: 238 SAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQEQM 297 Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396 T + D++ Q+GRTG +TPVARLEPV++ G L++NATLHN D I+ L +R Sbjct: 298 TFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERL-----------GLR 346 Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 +GD+V+++RAG+VIP+VV+++++ER D + FP+ CP+C S V R G+ VA Sbjct: 347 IGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVER----VEGEAVA-- 400 Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516 RCTGGL C AQ+ E LKHFVSR A +++G+G + +D + E + PAD+F L Sbjct: 401 RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKE----YVHTPADLFKL--- 453 Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 + K+ + G N+ +++ K + + RF+++LGIR VG A LA Y+ + Sbjct: 454 ---TAGKLTGLERMGPKLAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGT 510 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE----V 632 + A E +I L +VP VG ++A + F+ N + LL E Sbjct: 511 LE--ALEAASI--------EELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWP 560 Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 +P + E+ + S K +V TG+L ++ R A+ + +LGA V+ +S+KTD++I G+ Sbjct: 561 APIVINAEE-IDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGE 619 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLL 718 GSKL KAQ+LG+++++E + L LL Sbjct: 620 AAGSKLAKAQELGIEVIDEAEMLRLL 645 >gi|229523238|ref|ZP_04412645.1| DNA ligase [Vibrio cholerae TM 11079-80] gi|229339601|gb|EEO04616.1| DNA ligase [Vibrio cholerae TM 11079-80] Length = 669 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 248/708 (35%), Positives = 398/708 (56%), Gaps = 51/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L+ L + + H YY P I D+EYD L R + A P+L S+ P+ ++ Sbjct: 6 QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + V H IP LSL+ ++ +L F R+ ++ F EPK+DG Sbjct: 63 GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ Y+ G AA RGDG +GE+++ +R I +IP R+ + P +EVRGEV++ K Sbjct: 121 VSLLYQNGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253 F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + E+ A Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ LQ+ Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLVYEIDGVVIKVDDIQLQE 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NATL Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L + VGD V+++RAG+VIP++V +++ R +A+ FP+ Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTR 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+CQS V R G+ VA RC+GGL C AQ+ E LKHFVSR A ++EGLG + ++ Sbjct: 408 CPVCQSDVER----VEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQ 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L+ + T ++ G S N+ D++NK + +L +F Sbjct: 462 LVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTTLPKF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A +LA+++LS + Q I VP VG ++A + Sbjct: 512 LYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVVASHLQ 561 Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ RN + LL++ P++ V S + K +V TG+ ++ R+ A+ + Sbjct: 562 AFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQ 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 622 ALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669 >gi|262172020|ref|ZP_06039698.1| DNA ligase [Vibrio mimicus MB-451] gi|261893096|gb|EEY39082.1| DNA ligase [Vibrio mimicus MB-451] Length = 670 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 255/718 (35%), Positives = 397/718 (55%), Gaps = 70/718 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L L Q + H YY P I D+EYD L R + A P+L P+ P ++ Sbjct: 6 QRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDSPSLRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDL----RKFITRIYRFWQKKDDNSIFFTLEPKI 134 GG V H IP LSL+ ++ +L R+ RI Q F EPK+ Sbjct: 63 GGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSH------FCCEPKL 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG +++ YE G AA RGDG +GE+++ +R I +IP R+ + P +EVRGEV++ Sbjct: 117 DGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVFM 176 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEI 249 K F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G E+ Sbjct: 177 PKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLD-SRITAQRPLAFYAYSVGIIDGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 -ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDI 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++ Sbjct: 295 QLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L + VGD V+++RAG+VIP++V +++ R DA+P Sbjct: 355 NATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+CQS + R G+ VA RCTGGL C AQ+ E LKHFVSR A +++GLG + Sbjct: 404 FPACCPVCQSEIER----IEGEAVA--RCTGGLICQAQRKEALKHFVSRKAMDVDGLGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E + PAD+F L+ + T ++ G S N+ D++NK + + Sbjct: 458 VIEQLVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF+++LGIR VG A +LA+++L+ AQ + LI VP VG ++A Sbjct: 508 LPRFLYALGIREVGEATALNLAQHFLTLDAIAQASMD----------QLIEVPDVGGVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLK--------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 + F+ RN + L++ V+ SI S + K +V TG+ ++ Sbjct: 558 SHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIA-----ADSALAGKVVVLTGSFTQL 612 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R+ A+ + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++++E+ + L+ Sbjct: 613 SRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQALIDFLK 670 >gi|154685157|ref|YP_001420318.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens FZB42] gi|166215394|sp|A7Z261|DNLJ_BACA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|154351008|gb|ABS73087.1| LigA [Bacillus amyloliquefaciens FZB42] Length = 669 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 407/712 (57%), Gaps = 53/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A+ L + I + YY +P + DSEYD L + AI P+L P+ P Sbjct: 5 ETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + S KV H P LSL +N +DLR F R+ + + + + +E KI Sbjct: 62 TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAV----GDGVAYNVELKI 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I IP + N+ IEVRGE Y+ Sbjct: 118 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLS--IEVRGEAYMP 175 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F ALN+E + +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ + Sbjct: 176 KQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 235 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + L + LGF N ++ T ++ E+++ R+ LPY+IDG+V KVD Q+ Sbjct: 236 QSQGLDFLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQE 295 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+L Sbjct: 296 ELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASL 355 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED IK +DIR+ D+V+VK+AG++IP+VV++++ +R + + F+ P+ Sbjct: 356 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTG 404 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C+S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 405 CPECESELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ +R AD++ L + Q ++E + G+ S NL SI K + SLER Sbjct: 458 LFRE----HLVRNVADLYKLTKEQ---VIRLERM---GEKSTDNLISSIQKSKENSLERL 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR +G++ A++LA ++ S +N Q L+ V +G+ +A A++ Sbjct: 508 LFGLGIRFIGSKAAKTLAMHFESLENLKQVTEE----------ELLAVDEIGEKMADAVI 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668 +++ + + L + ++ + K V +E K +V TG L+++ R++A+ Sbjct: 558 TYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKA 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LG ++ +S+KTD++I G+ GSKL KAQ+L +++ NE Q L L++ Sbjct: 618 QIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEAQLLGELKK 669 >gi|94676849|ref|YP_588544.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123260587|sp|Q1LU20|DNLJ_BAUCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94219999|gb|ABF14158.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 671 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 259/714 (36%), Positives = 396/714 (55%), Gaps = 55/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++Q + + L Q++ Y + YY P + D EYD L + + +PDL ++ P Sbjct: 1 MKQIEQYIEQLRQQLRYWNFLYYAKDAPEVSDVEYDWLMMKLRELERQWPDLKTADSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 IG + KV H +P LSL+ I+N F RI R + +N + + E K Sbjct: 60 --QHIGYKAQSKFRKVIHEVPMLSLDHIFNDTSFLAFDRRI-RNRLQYGNNYLTYCCELK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEV 191 DG +++ Y+ GK + AA RGDGH GEDV+ IR I +IP L + IP +IE+RGEV Sbjct: 117 FDGIAVSLLYKHGKLIRAATRGDGHIGEDVTDNIRTICSIPLQLKDDGHIPRLIEIRGEV 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEI 249 +S++ F LN+ K +ANPRNAA+G LR+++P+ TR L+FF +G+G+ S+ Sbjct: 177 IMSEDAFRHLNETAKKNKSKRFANPRNAAAGSLRQVDPSITATRLLSFFCYGVGRIDSKK 236 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E+LQ+ + G PV+N R ++ +Y+ + +RS L ++IDG+V KV+ Sbjct: 237 IPAAHLELLQQFKIWGLPVSNYRRYCVGHQEVLDFYSYVSKVRSKLGFNIDGIVIKVNAL 296 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW I++K + T + +ID Q+GRTGI+TPVARL+PV I GA I+ Sbjct: 297 VQQQQLGFVARAPRWAIAYKLPANEQLTEIQNIDFQVGRTGIITPVARLKPVYISGAYIS 356 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NA+LH+ IK L +R+GD V+++ AG +IP++V+++V++R P Sbjct: 357 NASLHSFAEIKRL-----------GLRIGDTVVIRLAGNIIPQIVNVVVSKRSIKTSPVL 405 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 +P +CP+C S+V ++ KT CT G+ CSAQ E LKHFVSR A NI G+G + Sbjct: 406 YPLYCPVCGSKVKQNNKEKT------IICTAGMICSAQLKEALKHFVSRRAMNIYGMGGK 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + I+ P D+F L + Q T + G L D+I + + Sbjct: 460 IIDQLVDLK----IIQNPVDLFRLNQDQLTCLKNM------GQKKTKKLLDAIEYAKKTT 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF++++GIR +G A LA YY + I+ ++A D SL ++ +G I+A Sbjct: 510 FARFLYAIGIREIGETKAAYLADYY-------KHIDALMAA---DIESLTKIQDIGIIVA 559 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSEIENKKLVFTGTLQKIQRH 664 ++ F+ N NI +E L SP IG EKN + K +VFTGTL + R Sbjct: 560 TNVLNFFHNKHNIAIIEEL---CSPKIGIKFLSTLEKN--NYFSGKNIVFTGTLAFLSRE 614 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A + + LGA + + +S K D++I G N G KL KA+QL +KI+ E +F +L Sbjct: 615 EAIDMLIALGARIRSSVSSKIDLLIAGKNTGFKLTKAKQLQIKIIEEAEFYQIL 668 >gi|308172548|ref|YP_003919253.1| DNA ligase [Bacillus amyloliquefaciens DSM 7] gi|307605412|emb|CBI41783.1| DNA ligase [Bacillus amyloliquefaciens DSM 7] gi|328910657|gb|AEB62253.1| DNA ligase [Bacillus amyloliquefaciens LL3] Length = 669 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 407/712 (57%), Gaps = 53/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A+ L + I + YY +P + DSEYD L + AI P+L P+ P Sbjct: 5 ETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + S KV H P LSL +N +DLR F R+ + + + + +E KI Sbjct: 62 TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAV----GDGVAYNVELKI 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I IP + N+ IEVRGE ++ Sbjct: 118 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLS--IEVRGEAFMP 175 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F ALN+E + +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ + Sbjct: 176 KQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 235 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + L + LGF N +Q T ++ E+++ R+ LPY+IDG+V KVD Q+ Sbjct: 236 QSQGLDFLDELGFKTNQERKQCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQE 295 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+L Sbjct: 296 ELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASL 355 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED IK +DIR+ D+V+VK+AG++IP+VV++++ +R + + F+ P+ Sbjct: 356 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTV 404 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C+S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 405 CPECESELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ +R AD++ L + Q ++E + G+ S NL SI K + SLER Sbjct: 458 LFRE----HLVRNVADLYKLTKEQ---VIRLERM---GEKSTDNLISSIQKSKENSLERL 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR +G++ A++LA ++ S +N Q L+ V +G+ +A A++ Sbjct: 508 LFGLGIRFIGSKAAKTLAMHFESLENLKQATEE----------ELLAVDEIGEKMADAVI 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668 +++ + + L + ++ + K V +E K +V TG L+++ R++A+ Sbjct: 558 TYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKT 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LG ++ +S+KTD++I G+ GSKL KAQ+L +++ +E Q L L++ Sbjct: 618 QIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWDEAQLLGELKK 669 >gi|167647059|ref|YP_001684722.1| NAD-dependent DNA ligase [Caulobacter sp. K31] gi|190359242|sp|B0T1N5|DNLJ_CAUSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167349489|gb|ABZ72224.1| DNA ligase, NAD-dependent [Caulobacter sp. K31] Length = 792 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 243/582 (41%), Positives = 340/582 (58%), Gaps = 36/582 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I + L+ QA +EL L +++ HD Y+Q P I D+EYDALKRR I FP L Sbjct: 4 IAVADLTEAQAAEELERLADDLAAHDLRYHQQDAPTISDAEYDALKRRNLDIEDRFPHLV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R N P ++G V H +P LSL+ ++ ++ +F RI RF + ++ + Sbjct: 64 RD---NSPSMRVGAARAEQFSPVEHGVPMLSLDNAFSNDEATEFDARIRRFLRLTNE-PV 119 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------SLN 180 F+T EPKIDG ++RYEKG V A RGDG GEDV+A +R I IP L Sbjct: 120 FYTAEPKIDGLSASLRYEKGVLVQGATRGDGRMGEDVTANLRTIADIPHRLRGGDPQGGG 179 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P++IE+RGEVY+ F A N + G++ YANPRN A+G LR+++P R L FF Sbjct: 180 WPDVIEIRGEVYVELEAFAAFNAAALEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFF 239 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGF----PVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 + G TSE FA Q+E L K+R GF P V+ A G++ Y + + R L Sbjct: 240 AYAWGLTSEGFAATQWEALGKLRDWGFVTTAPPAERVQDA---QGLLDIYAKFEVERPKL 296 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 +DIDG+VYKVD+ Q++LG +RSPRW I+ KF +QA T L ID+Q+GRTG +TPV Sbjct: 297 AFDIDGVVYKVDDLEQQRRLGFVSRSPRWAIARKFPAQQARTILEAIDLQVGRTGAITPV 356 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 ARL+PV +GG +TNATLHN D I +D+R+GD V+++RAG+VIP++V Sbjct: 357 ARLKPVTVGGVSVTNATLHNADEI-----------ARKDVRIGDTVILQRAGDVIPQIVG 405 Query: 416 IIVNERHPDAQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 ++ ER A PF FP+ CP ++ +VR+ + G RC+G AC Q++E L+H Sbjct: 406 PVLEERPAGAVPFEFPTHCPCHLETPLVRE-STAAGAETVVRRCSGEFACPFQRIEHLRH 464 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSR AF+IEGLG++QL FF+ I+ PADIF L R + ++ G+G+ S Sbjct: 465 FVSRRAFDIEGLGEKQLAAFFEEG----WIKEPADIFKLA-RDEAKLAELRERDGYGETS 519 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 V NL I RR I L+R I+ LG+R +G + LA+ + S Sbjct: 520 VANLVKGIEARRTIGLDRVIYGLGMRDIGETTSTVLARNFAS 561 Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 85/153 (55%), Gaps = 6/153 (3%) Query: 569 SLAKYYLSYQNFAQEINNI-IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +LA+ Y + FAQ + +D+L L + +G + AQ+I F+ N V Sbjct: 641 ALAERYGDWDTFAQALAQAGQGAPGEDYLQLAAIDGIGPVAAQSIARFFAEAHNREKVAN 700 Query: 628 LLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L+ E + P + + + K +VFTG L+K+ R +A+ LGA V++ +S+KT Sbjct: 701 LIAELDIQPVA---KPKTDTAVAGKTIVFTGALEKMTRDEAKAQAEGLGAKVASSVSKKT 757 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 D+++ G GSKL+ A +LG+++M E+++L ++ Sbjct: 758 DLVVAGPGAGSKLKTATELGIQVMTEDEWLAMV 790 >gi|108803178|ref|YP_643115.1| DNA ligase, NAD-dependent [Rubrobacter xylanophilus DSM 9941] gi|122976160|sp|Q1AZ75|DNLJ_RUBXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|108764421|gb|ABG03303.1| DNA ligase, NAD-dependent [Rubrobacter xylanophilus DSM 9941] Length = 685 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 258/722 (35%), Positives = 394/722 (54%), Gaps = 59/722 (8%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 ++IP A + +AR+ + L ++I YH+ YY P I D+EYDAL R + + FP+ Sbjct: 8 RIIPPVAEKLAEARQRVEELREQIRYHNRKYYVEDAPEISDAEYDALYRELEELESRFPE 67 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L P+ P ++GGE +V H++P LSL+ +E+LR++ R+ R +++ Sbjct: 68 LV---TPDSPTQRVGGEPLEEFEEVRHAVPMLSLQNARRVEELREWDARVRRLLGPEEEG 124 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + + E KIDG +++RYE G+ V A RG+G GEDV+ +R I ++P L + P + Sbjct: 125 RLRYVTELKIDGLAVSLRYENGRLVRGATRGNGFVGEDVTRQLRTIRSVPDRLDDDPPGV 184 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 +E RGEVYI DF N G +P+ANPRN A+G +R+L+P R L +++G+ Sbjct: 185 LEPRGEVYIKLKDFEEFNRRRQERGERPFANPRNLAAGSVRQLDPRVTARRPLTIYLYGV 244 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHG----IVSYYNEMKSIRSTLPYDI 299 G+ E F + E L +R G VN +T HG ++ R L + + Sbjct: 245 GEGYENF-ESHSEALAALRRYGLRVN-----PHTVHGDIDSVIEECGRWAKKREALDFQV 298 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KVD Q++LG ++PRW I++KF TRL DI + +GRTG LTP A LE Sbjct: 299 DGVVVKVDSREQQERLGAVQKAPRWAIAYKFEPLAGRTRLRDIVVTVGRTGALTPQAVLE 358 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PVN+GG I+ ATLHNEDYIK + I +GD V+V+RAG+VIP+VV + Sbjct: 359 PVNVGGVTISRATLHNEDYIK-----------EKGILIGDTVIVERAGDVIPQVVRPVPE 407 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 ER D + F P CP+C RV R G+ + RC + C AQ LE + H+ SR Sbjct: 408 ERDGDEEEFRMPERCPVCGERVSR----PEGEAIT--RCA-NVRCPAQALEHIIHWASRG 460 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG++ F D IR AD++ L+ Q + + G G+ S NL Sbjct: 461 AMDIEGLGEKLARKLF---DLGL-IRDVADLYELRAEQ------LAPLEGLGEKSAQNLI 510 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I + + +R +F LGIRHVG+ A +A+ + +E+ + L Sbjct: 511 RAIERSKERPFDRVLFGLGIRHVGSATAELIAERF-----SGEELLRGVGVEE-----LT 560 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTG 656 ++ VG+I+A+A+VE++ N V L++ P G+ E+ S ++LV TG Sbjct: 561 QIEGVGEIVARAVVEYFSLEENRKLVRRLMEHGLNFGPVRGKPEEGPLS---GRRLVITG 617 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL + R + + + G V++ +SR TD ++ G+NPGSKLE+A++LGV +++EE Sbjct: 618 TLSR-PRSEISDLIEGAGGTVTSSVSRNTDYLVAGENPGSKLERARELGVPVLDEEGLRR 676 Query: 717 LL 718 LL Sbjct: 677 LL 678 >gi|328552313|gb|AEB22805.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens TA208] Length = 668 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 407/712 (57%), Gaps = 53/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A+ L + I + YY +P + DSEYD L + AI P+L P+ P Sbjct: 4 ETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTPDSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + S KV H P LSL +N +DLR F R+ + + + + +E KI Sbjct: 61 TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAV----GDGVAYNVELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I IP + N+ IEVRGE ++ Sbjct: 117 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLS--IEVRGEAFMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F ALN+E + +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ + Sbjct: 175 KQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + L + LGF N +Q T ++ E+++ R+ LPY+IDG+V KVD Q+ Sbjct: 235 QSQGLDFLDELGFKTNQERKQCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQE 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+L Sbjct: 295 ELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED IK +DIR+ D+V+VK+AG++IP+VV++++ +R + + F+ P+ Sbjct: 355 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTV 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C+S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 404 CPECESELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ +R AD++ L + Q ++E + G+ S NL SI K + SLER Sbjct: 457 LFRE----HLVRNVADLYKLTKEQ---VIRLERM---GEKSTDNLISSIQKSKENSLERL 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR +G++ A++LA ++ S +N Q L+ V +G+ +A A++ Sbjct: 507 LFGLGIRFIGSKAAKTLAMHFESLENLKQATEE----------ELLAVDEIGEKMADAVI 556 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668 +++ + + L + ++ + K V +E K +V TG L+++ R++A+ Sbjct: 557 TYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKT 616 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LG ++ +S+KTD++I G+ GSKL KAQ+L +++ +E Q L L++ Sbjct: 617 QIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWDEAQLLGELKK 668 >gi|52313150|emb|CAH55605.1| DNA ligase (NAD dependent) [Bacillus amyloliquefaciens FZB42] Length = 668 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 407/712 (57%), Gaps = 53/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A+ L + I + YY +P + DSEYD L + AI P+L P+ P Sbjct: 4 ETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPEL---RTPDSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + S KV H P LSL +N +DLR F R+ + + + + +E KI Sbjct: 61 TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAV----GDGVAYNVELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I IP + N+ IEVRGE Y+ Sbjct: 117 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLS--IEVRGEAYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F ALN+E + +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ + Sbjct: 175 KQSFEALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + L + LGF N ++ T ++ E+++ R+ LPY+IDG+V KVD Q+ Sbjct: 235 QSQGLDFLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQE 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+L Sbjct: 295 ELGYTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED IK +DIR+ D+V+VK+AG++IP+VV++++ +R + + F+ P+ Sbjct: 355 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTG 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C+S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 404 CPECESELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ +R AD++ L + Q ++E + G+ S NL SI K + SLER Sbjct: 457 LFRE----HLVRNVADLYKLTKEQ---VIRLERM---GEKSTDNLISSIQKSKENSLERL 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR +G++ A++LA ++ S +N Q L+ V +G+ +A A++ Sbjct: 507 LFGLGIRFIGSKAAKTLAMHFESLENLKQVTEE----------ELLAVDEIGEKMADAVI 556 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668 +++ + + L + ++ + K V +E K +V TG L+++ R++A+ Sbjct: 557 TYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKA 616 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LG ++ +S+KTD++I G+ GSKL KAQ+L +++ NE Q L L++ Sbjct: 617 QIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEAQLLGELKK 668 >gi|288554984|ref|YP_003426919.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4] gi|288546144|gb|ADC50027.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4] Length = 668 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 259/712 (36%), Positives = 401/712 (56%), Gaps = 62/712 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 ++A K + +L +++ + YY +P++ D+EYD L + A+ P+L SED P Sbjct: 4 QEAEKRVQTLREKLEEYGYHYYVLDQPLVTDAEYDQLMQELIALEGEHPELV-SED--SP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE KV H IP LSL +N +DLR F R+ +++ +++ ++ E KI Sbjct: 61 SVRVGGEPLPFFEKVEHQIPMLSLGNAFNDQDLRDFDRRV----RERVGDNVTYSCELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++ YE GKFV A RGDG GED++ ++ IP IP L L +EVRGE Y+ Sbjct: 117 DGLAVSLTYENGKFVRGATRGDGTIGEDITNNLKTIPAIP--LKLKQEASLEVRGEAYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F ALN+ G + +ANPRNAA+G LR+L+P R L+ F++ +G Sbjct: 175 KKSFEALNEAKSEAGEEKFANPRNAAAGSLRQLDPKIAAKRNLSIFIYAIGNAEGQDLAS 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E L ++ LGF VNN + T ++ Y NE R+ LPY+IDG+V KVD QK Sbjct: 235 HHEGLAYLKELGFKVNNESKHCATIEEVIEYTNEWLDKRADLPYEIDGIVIKVDSIEQQK 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW + KF ++ T L DI++ +GRTG++TP A L+PV + G + A+L Sbjct: 295 ELGFTAKSPRWATAFKFPAEEVVTVLRDIELSVGRTGVVTPTAILDPVVVAGTTVKRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED I+ +D+++GD V+VK+AG++IP+VV+++ + R + FS P+ Sbjct: 355 HNEDLIR-----------EKDVKLGDTVIVKKAGDIIPEVVNVLTDRRDGRERDFSMPTH 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C+S +VR G++ A RC C AQ E L HFVSR A NI+GLG++ + Sbjct: 404 CPECESELVR----LEGEV--ALRCINP-ECPAQIREGLIHFVSRQAMNIDGLGEKVIAQ 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ + I AD++ L R + K+E + G+ SV NL +I + SLE+ Sbjct: 457 LFEHK----LIHTVADLYQLDR---SELLKLERM---GEKSVDNLMKAIEASKENSLEKL 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR VG++ A++LA + S I+ II D +L+ V +G+ +A +IV Sbjct: 507 LFGLGIRFVGSKAAKTLAMEFES-------IDAII---EADEAALVAVNEIGEKMAASIV 556 Query: 614 EFYQNPRNICAVEALLKEV----------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 F++ V+ L+K + P + S NK +V TG L ++ R Sbjct: 557 RFFETDE----VKELIKRLQSYGVNTTYKGPKPVNGTEAAESPFANKTVVLTGKLYEMTR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A+E + LG V+ +S+KTDI+I G++ GSK +KA++LG++I +E L Sbjct: 613 DEAKEKIETLGGKVTGSVSKKTDIVIAGEDAGSKKKKAEELGIEIWDEAALL 664 >gi|311029281|ref|ZP_07707371.1| NAD-dependent DNA ligase LigA [Bacillus sp. m3-13] Length = 668 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 398/712 (55%), Gaps = 55/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQA K + L ++ ++ Y+ KP + D+EYD+L + + P+L ++ED P Sbjct: 4 EQAEKRVRELHDVLNQYNYEYHVLDKPSVSDAEYDSLLQELLTLEKEHPEL-QTED--SP 60 Query: 75 LNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GG + L +F KV H P LSL +N +DLR F R+ ++ + + + E K Sbjct: 61 TQRVGGNI-LEMFNKVEHRTPMLSLGNAFNEDDLRDFDRRV----KQAVGDDVTYVCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG +++RYE G FV A RGDG +GED++ ++ I +IP L L P +EVRGE Y+ Sbjct: 116 IDGLAVSLRYEDGLFVLGATRGDGTTGEDITMNLKTIKSIP--LRLKEPVTMEVRGEAYM 173 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 KN F LN + +P+ANPRNAA+G LR+L+P +R L+ +V+ L E Sbjct: 174 PKNSFEKLNAAKMEREEEPFANPRNAAAGSLRQLDPKIAASRNLSVYVYSLADAGEAGVD 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E L + LGF N + + ++ Y + R L YDIDG+V KVD Q Sbjct: 234 SHSEALDYLDKLGFKTNTERKVCTSIEEVLEYVTAWHTKRPDLSYDIDGIVIKVDNTEHQ 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG A+SPRW I++KF ++ +T+LLDI++ IGRTG++TP A LEPV + G + A+ Sbjct: 294 EQLGFTAKSPRWAIAYKFPAEEVTTKLLDIELNIGRTGVVTPTAILEPVRVAGTTVQRAS 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I+ +DI++GD V+VK+AG++IP+VV+++V++R + + F+ P+ Sbjct: 354 LHNEDLIR-----------EKDIKLGDTVIVKKAGDIIPEVVNVLVDQRTGEERDFTMPT 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C+S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 403 HCPECESELVR----IEGEV--ALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEKVIA 455 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F+ I AD++ L + Q ++ G+ S NL +I K ++ SLER Sbjct: 456 QLFREN----LIEDVADLYKLTKEQLLELERM------GEKSADNLISAIEKTKDNSLER 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIR VGA+ A++LA+ + A+ L + +GD +A +I Sbjct: 506 LLFGLGIRLVGAKAAKTLAQEFDHMDQLARLTKE----------ELTAIHEIGDKMADSI 555 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQ 667 V +++ P + L + + K VS+E K +V TG L+++ R+ A+ Sbjct: 556 VTYFEQPEVEELLAELKELGVNMAYKGPKPVSAEDVDSYFAGKTIVLTGKLEEMSRNDAK 615 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + QLG V+ +S+ T ++I G+ GSKL KAQ+LG+++ NE Q L +Q Sbjct: 616 AAIEQLGGKVTGSVSKNTHLVIAGEEAGSKLTKAQELGIEVWNEAQMLKEIQ 667 >gi|221066629|ref|ZP_03542734.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1] gi|220711652|gb|EED67020.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1] Length = 708 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 254/697 (36%), Positives = 386/697 (55%), Gaps = 52/697 (7%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D EYD + ++ +A+ A+P L P+ P ++ G + L V H++P Sbjct: 47 YYVLDAPTVPDGEYDRVYQQLEALEGAYPALV---TPDSPTQRVIGAVLDGLTPVRHAVP 103 Query: 95 TLSLEKIWNIE--DLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 LS++ + E F R+ + +I + EPK DG + +RYE G+ V A Sbjct: 104 MLSIQTETDNEATGAMAFDQRVRKELGLDASAAAIEYVAEPKFDGLAMNLRYENGRLVQA 163 Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 RGDG GEDV+ IR I IP L N+P ++EVRGEV+++K D LN A G Sbjct: 164 TTRGDGEVGEDVTHNIRTIRQIPLSLPADRNVPPVVEVRGEVHMAKADLEKLNARQQAAG 223 Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG-----QYEMLQKMRC 263 K +ANPRNAA+G +R+L+ + R L+FF +GLG+ + G Y MLQ +R Sbjct: 224 AKTFANPRNAAAGSVRQLDSSIAAQRPLSFFAYGLGEITPPEQGGPDFGTHYAMLQTLRS 283 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 GFPV V A +V+++ + + R+ LPY+IDG+VYKV+ +LQ++LG ++R PR Sbjct: 284 WGFPVAPQVALARGASELVAFHQRIGAERANLPYEIDGVVYKVNSLALQRRLGFKSREPR 343 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W ++HK+ ++ T + ID+Q+GRTG LTPVARL PV +GG ++TNATL N I+ Sbjct: 344 WAVAHKYPAQEMPTLMEAIDVQVGRTGKLTPVARLAPVQVGGVVVTNATLSNLFDIR--- 400 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 + +RVGD+V+V+RAG+VIP+VV + ER F P CPIC S VVR Sbjct: 401 --------KKGVRVGDQVIVRRAGDVIPEVVGRVPGERPVYVPNFRMPRTCPICASAVVR 452 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 + K A HRCTGGL C AQ+ E + HF R A +IEGLG + +D + Sbjct: 453 E------KGEANHRCTGGLFCGAQRKEAILHFAHRRAMDIEGLGDKLVDQLVDGQ----V 502 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 +R+ D++ L + + + + S N+ ++ K ++ +L+RF+F LGIR+VG Sbjct: 503 VRVLPDLYRL------GLSSLAALDRMAEKSAQNVLAALEKSKSTTLQRFLFGLGIRNVG 556 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 AR LAK++ +++ I+ + ++ L++V VG ++A +I F+ P N Sbjct: 557 ESTARDLAKHF-------GKLDAIMDASVEE---LLQVKDVGPVVADSIHTFFAQPHNRE 606 Query: 624 AVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 VE L V G + + +V TGTL + R A++ + GA VS +S Sbjct: 607 VVEQLRACGVHWEEGEPVEKAPQILAGLTVVLTGTLPTLGRDVAKDMLEAAGAKVSGSVS 666 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +KT ++ G GSKL KA++LGV +++E L LL+ Sbjct: 667 KKTSYVVAGAEAGSKLAKAEELGVPVLDEAGMLALLR 703 >gi|228995667|ref|ZP_04155330.1| DNA ligase [Bacillus mycoides Rock3-17] gi|228764044|gb|EEM12928.1| DNA ligase [Bacillus mycoides Rock3-17] Length = 669 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E+A++ + L ++ + Y+ P + D+EYD + + P+ + P Sbjct: 1 MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIEDSP 60 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 ++GG + L +F KVTH P LSL +N DLR F R+ Q DD+++ + Sbjct: 61 T---VRVGGAV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+FV A RGDG +GED++ ++ I IP L L +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIP--LRLKEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LNDE G +ANPRNAA+G LR+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNDEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S +VR L + A RC AC AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACDSELVR-LEEEV-----ALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F+++ IR AD++ L + Q + FG+ S + L +I + S Sbjct: 454 VITQLFEAD----YIRTFADLYPLTQEQLLQLER------FGEKSASKLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+LA+++ + + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATEEELKEINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVS-----PSIGRHE-KNVSSEIENKKLVFTGTLQKIQR 663 Q+IV ++ N ++ + KE I R + +N++S K +V TG L+ + R Sbjct: 554 QSIVTYFDN-EDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + +LG V+ +S+ TD+++ G+ GSKL +A++ +++ NEE+FL Sbjct: 613 SEAKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFL 664 >gi|229003296|ref|ZP_04161126.1| DNA ligase [Bacillus mycoides Rock1-4] gi|228757914|gb|EEM07129.1| DNA ligase [Bacillus mycoides Rock1-4] Length = 669 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E+A++ + L ++ + Y+ P + D+EYD + + P+ + P Sbjct: 1 MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIEDSP 60 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 ++GG + L +F KVTH P LSL +N DLR F R+ Q DD+++ + Sbjct: 61 T---VRVGGAV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+FV A RGDG +GED++ ++ I IP L L +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIP--LRLKEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LNDE G +ANPRNAA+G LR+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNDEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S +VR L + A RC AC AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACDSELVR-LEEEV-----ALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F+++ IR AD++ L + Q + FG+ S + L +I + S Sbjct: 454 VITQLFEAD----YIRTFADLYPLTQEQLLQLER------FGEKSASKLVQAIETSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+LA+++ + + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATEEELKEINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVS-----PSIGRHE-KNVSSEIENKKLVFTGTLQKIQR 663 Q+IV ++ N ++ + KE I R + +N++S K +V TG L+ + R Sbjct: 554 QSIVTYFDN-EDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + +LG V+ +S+ TD+++ G+ GSKL +A++ +++ NEE+FL Sbjct: 613 SEAKKKIEELGGKVAGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFL 664 >gi|258621988|ref|ZP_05717017.1| DNA ligase [Vibrio mimicus VM573] gi|258585741|gb|EEW10461.1| DNA ligase [Vibrio mimicus VM573] Length = 670 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/718 (35%), Positives = 397/718 (55%), Gaps = 70/718 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L L Q + H YY P I D+EYD L R + A P+L P+ P ++ Sbjct: 6 QRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDSPSLRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDL----RKFITRIYRFWQKKDDNSIFFTLEPKI 134 GG V H IP LSL+ ++ +L R+ RI Q F EPK+ Sbjct: 63 GGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSH------FCCEPKL 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG +++ YE G AA RGDG +GE+++ +R I +IP R+ + P +EVRGEV++ Sbjct: 117 DGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVFM 176 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEI 249 K F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G E+ Sbjct: 177 PKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLD-SRITAQRPLAFYAYSVGIIDGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 -ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDI 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++ Sbjct: 295 RLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L + VGD V+++RAG+VIP++V +++ R DA+P Sbjct: 355 NATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+CQS + R G+ VA RCTGGL C AQ+ E LKHFVSR A +++GLG + Sbjct: 404 FPACCPVCQSEIER----IEGEAVA--RCTGGLICQAQRKEALKHFVSRKAMDVDGLGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E + PAD+F L+ + T ++ G S N+ D++NK + + Sbjct: 458 VIEQLVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDALNKAKQTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF+++LGIR VG A +LA+++L+ AQ + LI VP VG ++A Sbjct: 508 LPRFLYALGIREVGEATALNLAQHFLTLDAIAQASMD----------QLIEVPDVGGVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLK--------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 + F+ RN + L++ V+ SI S + K +V TG+ ++ Sbjct: 558 SHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIA-----ADSALAGKVVVLTGSFTQL 612 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R+ A+ + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++++E+ + L+ Sbjct: 613 SRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEQALIDFLK 670 >gi|229015686|ref|ZP_04172669.1| DNA ligase [Bacillus cereus AH1273] gi|229021878|ref|ZP_04178448.1| DNA ligase [Bacillus cereus AH1272] gi|228739424|gb|EEL89850.1| DNA ligase [Bacillus cereus AH1272] gi|228745603|gb|EEL95622.1| DNA ligase [Bacillus cereus AH1273] Length = 669 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ + P Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMGEDSP 60 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + ++GG + L +F KVTH P LSL +N DLR F R++ Q DD ++ + Sbjct: 61 S---IRVGGTI-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTVVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC AC AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIESSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKTINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|229131294|ref|ZP_04260196.1| DNA ligase [Bacillus cereus BDRD-ST196] gi|228652180|gb|EEL08115.1| DNA ligase [Bacillus cereus BDRD-ST196] Length = 669 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R++ Q DD ++ + Sbjct: 59 -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++Q+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 AIQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R D + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGDEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLELER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKTINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|262375659|ref|ZP_06068891.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145] gi|262309262|gb|EEY90393.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145] Length = 679 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 262/714 (36%), Positives = 392/714 (54%), Gaps = 59/714 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L Q ++ H+ YY +P I DSEYD L + A+ +PDL +S+ P +K+G Sbjct: 10 QMRQLIQLLAKHNHAYYVMDQPSIEDSEYDQLFHQLKALEQQYPDLIQSDSPT---DKVG 66 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G+ VTH++P LSL ++N EDL F RI ++ + I + +E K DG I Sbjct: 67 GQALSKFVTVTHAVPMLSLGNVFNQEDLLAFARRIE---ERLPNQKIEYDVELKFDGLAI 123 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LN--IPEIIEVRGEVYISKN 196 ++ YE G RGDG +GED++ +R I +P++LS +N IP+++EVRGEV + K+ Sbjct: 124 SLWYEHGVLTRGVTRGDGETGEDITQNVRTIRNLPKLLSPVNGIIPDLLEVRGEVLMPKS 183 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 F LN A G K +ANPRNAA+G LR+L+P +R L F+ +G+ + + GQ Sbjct: 184 GFEKLNAANAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQC--VPHHGQT 241 Query: 256 EM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 M L+ + GF V ++ + Y ++ R++L +IDG+V KV++ Q Sbjct: 242 TMSASLEWLHQFGFAVGERHFICDSIQDVQKVYEQIIDERASLSVEIDGMVIKVNDLKQQ 301 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG +R PRW ++KF A T + +I+ Q+GRTG LTPVARL PV +GG ++N T Sbjct: 302 QQLGFLSREPRWATAYKFPAVAALTTVENINWQVGRTGTLTPVARLNPVAVGGVTVSNVT 361 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN I L D+R+GD V V R+G+VIPKV + R DA P Sbjct: 362 LHNIGEIHRL-----------DVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDAVEVHLPE 410 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S VV G+ +A RC+GGL C+AQ++E ++HFVSR A +IEGLG D Sbjct: 411 QCPVCDSPVVM----PEGEALA--RCSGGLYCAAQRIEAIRHFVSRKAMDIEGLG----D 460 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + +S + +DI+ L ++T + I G SV NL D+I + +L Sbjct: 461 RWAESLLHLNLLNDVSDIYHLHEHRET----LLGIEKMGAKSVQNLLDAIENSKKTTLAA 516 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI++LGIR VG AR LA + + Q D +L + P VGDI A+ I Sbjct: 517 FIYALGIRGVGETTARMLANTFQTLDALRQA----------DLEALKKTPDVGDITAEWI 566 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQKIQRHKAQE 668 ++F+Q P N+ ++ LL + G H + + V TGTL + R A + Sbjct: 567 LDFFQAPHNLEVLDRLL-----AAGIHWDAPIAPTRQPLNGESWVVTGTLSSMGRDDATQ 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + LGA VS +S KT ++ G+ GSKL+KA++LG+ ++NE+QF+ L+Q Y Sbjct: 622 LLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIPVINEQQFIGLMQDYG 675 >gi|323342976|ref|ZP_08083207.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463040|gb|EFY08235.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 659 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/700 (36%), Positives = 395/700 (56%), Gaps = 48/700 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +++ + +L +++ ++ Y+ +P I D EYD L R + + P+ D N P Sbjct: 2 SKERILALRKKLHQYNYEYHVMDQPTIADVEYDQLLRELNELEVKHPEFF---DINSPTQ 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K+GG ++ KVTH P SL ++ DL F R+ + ++ + +E KIDG Sbjct: 59 KVGGVVSERFSKVTHRFPMFSLGNAFSRSDLEVFDERL-----RAQFPNVSYVVELKIDG 113 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 ++I YE G F+ A RGDG GEDV+ IR I +IP L LNI E + VRGEV++ Sbjct: 114 LAMSIDYEDGLFIQAVTRGDGTVGEDVTQNIRVIDSIP--LKLNIDEDVTVRGEVFMPVK 171 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F +N+ +AN RNAA+G +R+L+ + TR L+ F + L E+ QY Sbjct: 172 SFTRVNESRKENNEALFANCRNAAAGTIRQLDSKVVATRGLDGFWYTLVNAKELGITSQY 231 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + L ++ +GF VN ++ NT + E++ +R++LPYDIDG+V KV++F++Q++L Sbjct: 232 DSLTYLKQIGFKVNPEIKLCNTIDAVWQRIEEIEHMRASLPYDIDGVVIKVNDFAMQEEL 291 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++ TR+ DI + +GRTG +TP A+L PV I G+L++ ATLHN Sbjct: 292 GFTVKTPRWAIAYKFKAEEVKTRVEDIFVTVGRTGKITPNAKLTPVQISGSLVSYATLHN 351 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 EDYI +DIRVGD V+V++AGE+IP++V + V+ R +P+ FP CP Sbjct: 352 EDYIT-----------NKDIRVGDEVVVRKAGEIIPEIVSVDVSNRTDVIKPYHFPKVCP 400 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C +VR A H C + CSA+ E L HF SRDA NI+ LG++++ + Sbjct: 401 VCMGHLVRFEGE------ADHYCV-NVDCSAKISEALVHFASRDAMNIDTLGERRV---Y 450 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D + DI+TLQ + +E + G S L D+I +N S+E+ IF Sbjct: 451 QLHDAKL-LNTITDIYTLQEHKDA----LEKLEKMGPKSAEKLLDAIENSKNNSVEKLIF 505 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIRHVGA+ + LA YY + I +++ D+ LI + +G +IAQ++V F Sbjct: 506 GLGIRHVGAKTSNVLAAYY-------KTIASLMDATYDE---LIEIDEIGGVIAQSVVSF 555 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 ++ N +E LL E + + SS+ E K V TGTLQ + R A++ + G Sbjct: 556 FEIDHNRELIEDLL-ERGVNGNYNHVVTSSKFEGMKFVLTGTLQTMGRTDAKKMIESFGG 614 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 VS +S KTD+++ G++ GSKL KAQ LGVK EE+FL Sbjct: 615 SVSGSVSSKTDVVVYGESAGSKLTKAQSLGVKTWTEEEFL 654 >gi|258627076|ref|ZP_05721872.1| DNA ligase [Vibrio mimicus VM603] gi|258580594|gb|EEW05547.1| DNA ligase [Vibrio mimicus VM603] Length = 670 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/718 (35%), Positives = 396/718 (55%), Gaps = 70/718 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L L Q + H YY P I D+EYD L R + A P+L P+ P ++ Sbjct: 6 QRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELI---TPDSPSLRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDL----RKFITRIYRFWQKKDDNSIFFTLEPKI 134 GG V H IP LSL+ ++ +L R+ RI Q F EPK+ Sbjct: 63 GGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSH------FCCEPKL 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG +++ YE G AA RGDG +GE+++ +R I +IP R+ + P +EVRGEV++ Sbjct: 117 DGLAVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVFM 176 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEI 249 K F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G E+ Sbjct: 177 PKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLD-SRITAQRPLAFYAYSVGIIDGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ Sbjct: 236 -ATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDI 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++ Sbjct: 295 QLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L + VGD V+++RAG+VIP++V +++ R DA+P Sbjct: 355 NATLHNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+CQS + R G+ VA RCTGGL C AQ+ E LKHFVSR A +++GLG + Sbjct: 404 FPACCPVCQSEIER----IEGEAVA--RCTGGLICQAQRKEALKHFVSRKAMDVDGLGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E + PAD+F L+ + T ++ G S N+ D++NK + + Sbjct: 458 VIEQLVDRE----MVSTPADLFRLRTGELTILERM------GPKSAQNVIDALNKAKQTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF+++LGIR VG A +LA+++L+ AQ + LI VP VG ++A Sbjct: 508 LPRFLYALGIREVGEATALNLAQHFLTLDAIAQASMD----------QLIEVPDVGGVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLK--------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 + F+ RN + L++ V+ SI S + K +V TG+ ++ Sbjct: 558 SHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIA-----ADSALAGKVVVLTGSFTQL 612 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R+ A+ + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++++E + L+ Sbjct: 613 SRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVLDEHALIDFLK 670 >gi|281412160|ref|YP_003346239.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10] gi|281373263|gb|ADA66825.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10] Length = 688 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 259/705 (36%), Positives = 394/705 (55%), Gaps = 51/705 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E+ L +EI YH+ YY + P+I D EYD L RR + +P+L P+ P ++ Sbjct: 12 EEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELERMYPELV---TPDSPTQRV 68 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ V HS+P LSL+ +N E++ +F R+ + Q+ + + + E KIDG Sbjct: 69 GGKVLEGFKTVKHSVPMLSLDNTYNEEEILEFDRRVKKTLQEAE---VEYVAELKIDGVS 125 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I +RYE GKFV A RGDG GEDVS ++ + +IP L L +EVRGE+Y+ ++F Sbjct: 126 IALRYENGKFVLGATRGDGIEGEDVSENVKTVRSIP--LRLRKLVTVEVRGEIYMPVDEF 183 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 LNDE G P+ANPRNAA+G LR+LN + R L+ F++ + K Q+E Sbjct: 184 KRLNDEREEEGLPPFANPRNAAAGTLRQLNTALVAARRLDSFIYYVVHPENYGLKTQWEA 243 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ ++ LGF VN + ++ Y+ E K + L Y +DG+V KV+ F Q+ LGE Sbjct: 244 LQFLKELGFKVNPHSKLCKNIQEVIDYWREWKERKKELDYWVDGVVVKVNRFDFQRILGE 303 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +++PRW I+ KF +QA TR+LD+ IQ+GRTG+LTPVA LEPV + G ++ A+LHN + Sbjct: 304 TSKAPRWAIAFKFPAEQARTRVLDVTIQVGRTGVLTPVAELEPVQLAGTIVKRASLHNFE 363 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI+ +DIR+GD V V++AG +IP++V I R + P CP+C Sbjct: 364 YIR-----------EKDIRIGDYVFVEKAGGIIPQIVKSIPELRTGSEKEIKPPDKCPVC 412 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +V + L+P+ A RC C A+ L+ VSR+A +IEGLG++ +D Sbjct: 413 GGKVGK-LDPEE----VALRCLNP-HCPAKLKRALRTLVSREALDIEGLGEKLIDRLVD- 465 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A ++ ADIF L T + G G ++ + I + + L + I L Sbjct: 466 ---AGLVKDIADIFYL-----TPFDLAQLGPGIGQRTIAKILQEIEEAKKRPLHKLITGL 517 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI VG + A+ LA+++ S + A + + +L +P +G IA++IVE+++ Sbjct: 518 GIPMVGQKTAKILAEHFKSLEAIA----------DASYETLKDIPGIGPEIAKSIVEYFR 567 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQRHKAQEYVTQLGA 675 NP+ +E L K + E+ + +I K L F TGTL+ R + E+ +LGA Sbjct: 568 NPKTREIIEKLKK---AGVKLEERVMKLDI-LKGLTFAVTGTLKNFTREEIVEFFEKLGA 623 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V +SR TD +IVG+NPGSK EKA+ L VK M+EE+FL +++ Sbjct: 624 KVVNSVSRNTDYLIVGENPGSKYEKAKMLKVKTMSEEEFLEFVRK 668 >gi|259907817|ref|YP_002648173.1| NAD-dependent DNA ligase LigA [Erwinia pyrifoliae Ep1/96] gi|224963439|emb|CAX54927.1| DNA ligase [Erwinia pyrifoliae Ep1/96] gi|283477688|emb|CAY73604.1| DNA ligase [Erwinia pyrifoliae DSM 12163] Length = 678 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 248/716 (34%), Positives = 418/716 (58%), Gaps = 55/716 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + +++ L + +++ Y+ P + D+EYD L + P+L S+ P Sbjct: 1 MESVQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRDLEAQHPELLTSDSPTQ 60 Query: 74 PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 + G LS+F +V H +P LSL+ ++ E F R+ + DD I F E Sbjct: 61 RV----GAAPLSVFEQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCEL 114 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG +++ YEKG+ V AA RGDG +GE+++A +R I IP R+ NIPE +EVRGEV Sbjct: 115 KLDGLAVSLLYEKGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSE 248 ++ F +N++ + G+K +ANPRNAA+G LR+L+P R L FF +GLG + E Sbjct: 175 FMPLVGFEQMNEQARSSGQKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGE 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + LQ+ + G PV++ VR ++ ++ +Y+++++ R TL +DIDG+V KVD Sbjct: 235 M-PRSHRARLQRFKAWGLPVSDRVRLCHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDS 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G ++ Sbjct: 294 LALQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVLVAGVMV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L +++GDRV+++RAG+VIP+V+ ++ E +A+ Sbjct: 354 SNATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVV--ETGDNAREI 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +FP+ CP+C S V R G++VA RCTGGL C AQ+ LKHFVSR A +I+G+G+ Sbjct: 401 AFPTRCPVCGSDVER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGE 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +D E ++ PA++F L + K+ + G S N+ +++ K + Sbjct: 455 KIIDQLVDKE----YVKNPAELFEL------TAGKLTGLDRMGPKSAQNVVNALVKAKQT 504 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + RF+++LGI VG A +LA ++ + ++ ++A + D +L+ V VG ++ Sbjct: 505 TFARFLYALGISEVGEATAANLAAHFGT-------LDALMAADLD---ALMAVQDVGKVV 554 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRH 664 A + F N+ + L+ + + + + + S K +V TG+L + R Sbjct: 555 ASHVRNFLDEESNLEIIRLLVDKAGVNWPQVMVVKAEEIDSPFAGKTVVLTGSLSILSRD 614 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A++ + LGA VS +S+KTD+++ G+ GSKL KA++LG+ +++E++ + LL + Sbjct: 615 EAKDRLQALGAKVSGSVSKKTDLVVAGEAAGSKLAKARELGIDVIDEQEMIRLLGE 670 >gi|192361192|ref|YP_001982383.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107] gi|254781281|sp|B3PGQ8|DNLJ_CELJU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190687357|gb|ACE85035.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107] Length = 680 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/713 (35%), Positives = 401/713 (56%), Gaps = 58/713 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E++ L ++I YH+ YY +P I D+EYD L +R + +P S P+ P ++G Sbjct: 13 EIAQLREQIRYHNYRYYALDEPQIPDAEYDRLMQRLRELEAQYP---ASVTPDSPTQRVG 69 Query: 80 GEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 LS F+ V H IP LSL+ + D+ F RI + K +I + E K+DG Sbjct: 70 A-APLSAFQTVEHQIPMLSLDNAFEEADVIAFNQRI--LDRLKSTENIEYACELKLDGLA 126 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ Y G V A RGDG GED++ +R I ++P ++L P ++EVRGEVY+ K Sbjct: 127 VSLLYRDGVLVRGATRGDGSKGEDITQNLRTIASVPLKLLGEGYPAVLEVRGEVYMPKAG 186 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F ALN++ + G K + NPRNAA+G LR+L+ +R L + +G G + Sbjct: 187 FNALNEKARSTGEKLFVNPRNAAAGALRQLDSRITASRPLEMCAYSVGLVEGGELPGTHT 246 Query: 257 -MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 +L ++ GF N A+T +++Y +++ R +L YDIDG+V+KV+ LQ+ L Sbjct: 247 GILAALKSWGFLTNKETATASTIADCIAFYQSIQARRDSLAYDIDGIVFKVNARELQESL 306 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I++KF ++ T L D++ Q+GRTG +TPVARL+PV +GG ++NATLHN Sbjct: 307 GFISRAPRWAIAYKFPAQEEMTVLQDVEFQVGRTGAVTPVARLQPVFVGGVTVSNATLHN 366 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L I +GD V+V+RAG+VIP++V ++ + R DA+P FP CP Sbjct: 367 RDEIQRL-----------GIMIGDTVIVRRAGDVIPQIVQVVESRRPTDARPVLFPDHCP 415 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S V +T + A RC+GGL C+AQ+ E +KHF SR A ++EGLG + ++ Sbjct: 416 VCGSPV------ETLEDEAIARCSGGLVCAAQRKEAIKHFASRKALDVEGLGDKLVEQLV 469 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 D ++ ADI+ L Q + ++ G+ S NL ++ ++ +L +FI+ Sbjct: 470 ---DTGLVSKL-ADIYQLTGEQLAAMERM------GEKSADNLLQALEASKHTTLAKFIY 519 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR +G AR+LA ++ S + A+ D +L++V VG + A + EF Sbjct: 520 ALGIREIGEATARNLANHFGSLEKLAEA----------DEETLVQVNDVGPVGAHFVAEF 569 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKL-----VFTGTLQKIQRHKAQEY 669 + N AV L + G H +++ S IE+ L V TGTL+ + R A+ + Sbjct: 570 FAQESNRQAVADL-----RAAGIHWQDLDVSTIEDLPLKGLTYVLTGTLEVMSRDDAKAH 624 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + LGA V+ +S KTD ++ G GSKL+KA++L + +M+EE L LL+++ Sbjct: 625 LLALGAKVAGSVSAKTDYVVAGPGAGSKLQKARELNLNVMDEEALLDLLRKHG 677 >gi|296135970|ref|YP_003643212.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12] gi|295796092|gb|ADG30882.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12] Length = 688 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 247/712 (34%), Positives = 378/712 (53%), Gaps = 62/712 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q + + L EI+ D YY P+ D++YDAL R I P+L P+ P Sbjct: 9 QPAERAAQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPEL---RTPDSPT 65 Query: 76 NKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEP 132 ++GG V H++P LS+ E E F R+ R DD + + E Sbjct: 66 QRVGGAPLPEFAPVRHAVPMLSIQTETDTTPEGAVAFDQRVRNRLGLSADDPPVNYCAEL 125 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K DG I++RYE G+ V AA RGDG +GEDV+ +R I ++P L N P ++EVRGE Sbjct: 126 KFDGLAISLRYEHGQLVQAATRGDGETGEDVTQNVRTIRSVPLQLRGNPPAVLEVRGEAL 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + + DF N G NPRN A+G +R+L+P R L F+ +G G+ ++ Sbjct: 186 MKRADFERYNARQRDKGLPTLVNPRNGAAGSIRQLDPAIAAQRPLAFYAYGWGEIADWAQ 245 Query: 252 K--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + ML G PV ++ ++ + + R +LP+DIDG+VYKVD Sbjct: 246 QPDTHHAMLDAFETFGLPVAPQRVHGPGAQTLIDFHARIAAARDSLPFDIDGVVYKVDSL 305 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG R R P W ++HK+ ++ ST+++ IDIQ+GRTG LTPVA+LEPV +GG +T Sbjct: 306 ALQRELGFRNREPVWAVAHKYPAQERSTKVIGIDIQVGRTGKLTPVAKLEPVFVGGVTVT 365 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPF 428 NATLHNED ++ +D+RVGD V+V+RAG+VIP+VV ++++ R D +PF Sbjct: 366 NATLHNEDEVR-----------RKDVRVGDTVIVRRAGDVIPEVVSVVMSARPADVGEPF 414 Query: 429 S----FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 CP+C S +VR+ A RCTGGL C+AQ+ + + H+ SR A +IE Sbjct: 415 DLYQRLGGQCPVCGSAIVREAGE------ADWRCTGGLFCAAQRKQAILHYASRRAMDIE 468 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ +D A +R+ D++ L K+ + + S NL ++ Sbjct: 469 GLGEKLVDQLVD----AGIVRVLPDLYRL------GLLKLAALDRMAEKSAANLLQALQA 518 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L RF+++LGIRHVG A+ LA+++ + A + L+ VP V Sbjct: 519 SKTTTLARFLYALGIRHVGEATAKDLARHF----------GGLDAILDASLEQLLEVPDV 568 Query: 605 GDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 G ++AQ+I F+ P N VE L E +P +++ + K LV TG L Sbjct: 569 GPVVAQSIRTFFDQPHNREVVEQLRACGVHWSEAAP-----DRDAPKPLAGKTLVLTGIL 623 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 + R +A+ + G V+ +S+KTD ++ G GSKL KAQ+LGV +++ Sbjct: 624 PTLSREEAKARIEAAGGKVAGSVSKKTDYVVAGAEAGSKLAKAQELGVTVLD 675 >gi|229194680|ref|ZP_04321473.1| DNA ligase [Bacillus cereus m1293] gi|228588783|gb|EEK46808.1| DNA ligase [Bacillus cereus m1293] Length = 669 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/712 (36%), Positives = 401/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +EVRGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEVRGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F+++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFEAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|311067136|ref|YP_003972059.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942] gi|310867653|gb|ADP31128.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942] Length = 668 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 245/712 (34%), Positives = 404/712 (56%), Gaps = 53/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A++ L I+ + YY +P + DSEYD L + + PDL P+ P Sbjct: 4 EAAKRRAEDLRSTINQYSYEYYTLDEPSVPDSEYDKLMQELLDLEEEHPDL---RTPDSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + + KV H P LSL +N EDLR F R+ ++ + + + +E KI Sbjct: 61 TQRVGGAVIDAFQKVRHGTPMLSLGNAFNAEDLRDFDRRV----RQAVGDDVAYNVELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I IP + N+ IEVRGE Y+ Sbjct: 117 DGLAVSLRYENGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLS--IEVRGEAYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F ALN+E + +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ Sbjct: 175 KRSFEALNEERLKKEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVDT 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + L + +GF N ++ T ++ E+++ R+ LPY+IDG+V KVD Q+ Sbjct: 235 QSQGLDFLDEIGFKTNQERKKCGTIDEVIDMIEELQAKRADLPYEIDGIVVKVDSLDQQE 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T LLDI++ +GRTG++TP A LEPV + G + A+L Sbjct: 295 ELGFTAKSPRWAIAYKFPAEEVVTTLLDIELNVGRTGVITPTAVLEPVKVAGTTVQRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED I+ +DIR+ D+V++K+AG++IP+VV+++ +R + F+ P+ Sbjct: 355 HNEDLIR-----------EKDIRILDKVVIKKAGDIIPEVVNVLTEQRTGQEKEFNMPTT 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 404 CPECGSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ + +R AD++ L + + ++ G+ S NL SI K + SLER Sbjct: 457 LFQEK----LVRNVADLYKLTKERVIQLERM------GEKSTDNLISSIQKSKENSLERL 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR +G++ A++LA ++ S ++++ N ++ L+ + +G+ +A A++ Sbjct: 507 LFGLGIRFIGSKAAKTLAMHFES-------LDHLKKANKEELLA---IDEIGEKMADAVI 556 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668 ++Q + ++ L + ++ + K V E K +V TG L+++ R+ A+ Sbjct: 557 TYFQKEEMLELLDELEQLGVNTLYKGPKKVKVEDSDSYFAGKTIVLTGKLEELSRNDAKA 616 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LG ++ +S+ TD++I G+ GSKL KA++L +++ NEEQ L L++ Sbjct: 617 QIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAEELNIEVWNEEQLLGELKK 668 >gi|297570387|ref|YP_003691731.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2] gi|296926302|gb|ADH87112.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2] Length = 680 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/720 (35%), Positives = 404/720 (56%), Gaps = 51/720 (7%) Query: 6 LIP--IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 +IP ++A + EQAR+ ++ L ++I YH+ YY P I D+EYDAL R + +P Sbjct: 1 MIPPLLQAAAKEQARQRVAELREQIRYHNHRYYVLDDPEIPDAEYDALFRELQELEERYP 60 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 LA ++ P+ ++G E V H +P LSLE +N ++ F+ R+ RF D Sbjct: 61 GLAGADSPS---RQVGAEPLAQFAPVAHRLPMLSLENAFNEGEISDFLLRLGRFLHT--D 115 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--- 180 EPK+DG + + YE G F + RGDG +GE+++A + I TIPR L Sbjct: 116 QVPALHAEPKLDGLAVELVYEDGLFTLGSTRGDGFTGENITANLATIATIPRRLKTGGNP 175 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P +E+RGEV +S F LN G +ANPRNAA+G LR+L+P R L FF Sbjct: 176 PPARLEIRGEVCLSITGFKELNRRRGEAGESLFANPRNAAAGSLRQLDPAITADRPLEFF 235 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 +G ++ + Q ++L+++ G + R ++++ + R +PY+I Sbjct: 236 AYGAADSAALAVTTQAQLLEQLHAFGLQLIPHGRVCPDLETALAHFRFLDEQRRQMPYEI 295 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV++ +LQK+LG +ARSPRW ++ KFA QA+T+L+ ++ Q+GRTG +TPVA LE Sbjct: 296 DGMVLKVNDLALQKRLGAKARSPRWAVAAKFAAVQAATKLIGVEFQVGRTGAVTPVAVLE 355 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG L++ ATLHNED IK +D+R+ D VLV+RAGEVIP+VV + + Sbjct: 356 PVKVGGVLVSRATLHNEDEIK-----------RKDLRLHDTVLVQRAGEVIPEVVKPVAD 404 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R D +P P+ CP C ++R K G+ A RC C AQ+L L HF S+ Sbjct: 405 KRRGDEKPIQLPANCPECDHALIR----KEGE--AVRRCPNP-QCPAQRLRSLIHFCSKA 457 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 +I+GLGK+ ++ ++ IP DI+ L+ Q + + G+G+ S + Sbjct: 458 GLDIDGLGKKAVELLVQT---GLVGDIP-DIYRLRPEQ------LAPLPGWGEKSAAKVC 507 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 D+I ++ L R + +LGIRHVG A+ LA+++ S + Q + +D+L Sbjct: 508 DAIAAAKSPKLARLLAALGIRHVGEVNAQVLARHFPSLEALQQAM-------EEDFLE-- 558 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTL 658 V +G +A ++V F+++P A+ A LKE+ +I E+ ++N+ +FTG+L Sbjct: 559 -VEGIGSQVAASLVTFFKDP-TTTAMLAQLKELGLTISPEEQPAQQLPLQNRVFLFTGSL 616 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R++A+ V +LG V+ L+RK ++ GD PGSKL KA++L ++I+ E F LL Sbjct: 617 AGMSRNEAKARVKELGGQVATGLNRKVTHLVCGDKPGSKLTKARELELEILTEADFARLL 676 >gi|261211985|ref|ZP_05926271.1| DNA ligase [Vibrio sp. RC341] gi|260838593|gb|EEX65244.1| DNA ligase [Vibrio sp. RC341] Length = 670 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 251/709 (35%), Positives = 392/709 (55%), Gaps = 52/709 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L+ L Q + H YY P I D+EYD L R I P+ P+ P ++ Sbjct: 6 QRLTELRQTLHEHGIRYYVEDAPTIPDAEYDRLMRELLDIEAQHPEWI---TPDSPSLRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKIDGT 137 GG V H IP LSL+ ++ +L F R+ R + + F EPK+DG Sbjct: 63 GGRPLDGFDSVIHEIPMLSLDNAFDDAELESFYRRMTDRIPAVQQSH---FCCEPKLDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ YE G AA RGDG +GE+++ +R I +IP R+ + P +EVRGEV++ K Sbjct: 120 AVSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPRRLEVRGEVFMPKA 179 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEIFAKG 253 F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + A Sbjct: 180 GFDALNARALKKGEKQFVNPRNAAAGSLRQLD-SRITAQRPLAFYAYSVGIIEGGMLASS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ +++ G P+ + + + +Y ++ R L Y+IDG+V KVD+ +LQ+ Sbjct: 239 HYQRFLQLKSWGLPICPETKLVASLSEVKDFYQDILQRRGALAYEIDGVVIKVDDITLQE 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NATL Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L + VGD V+++RAG+VIP++V +++ R DA+ FP+ Sbjct: 359 HNADEIERL-----------GVMVGDTVVIRRAGDVIPQIVSVVLERRPVDAKTILFPTH 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+CQS D+ G+ VA RCTGGL C AQ+ E LKHFVSR A ++EGLG + ++ Sbjct: 408 CPVCQS----DIERIEGEAVA--RCTGGLVCQAQRKEALKHFVSRKALDVEGLGDKVIEQ 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L+ + T ++ G S N+ D+++K + +L +F Sbjct: 462 LVDRE----MVATPADLFRLRAGELTILERM------GPKSAQNVIDALHKAKQTTLPKF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGIR VG A +LA+++L+ + AQ LI V VG+++A + Sbjct: 512 LYALGIREVGEATALNLAQHFLTLEAIAQATME----------QLIEVSDVGNVVAGHLH 561 Query: 614 EFYQNPRNICAVEAL--LKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F+ RN + L L P++ S + K +V TG+ ++ R+ A+ + Sbjct: 562 AFFAQSRNQKVIAELIELGVTWPAMAAISSTEADSVLAGKVVVLTGSFNQLSRNDAKAAL 621 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA V+ +S+ TDI+ G+ GSKL KA +LGV +M+E+ + LL+ Sbjct: 622 QALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGVAVMDEQALIELLK 670 >gi|289432483|ref|YP_003462356.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT] gi|288946203|gb|ADC73900.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT] Length = 680 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/717 (35%), Positives = 390/717 (54%), Gaps = 63/717 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ +L +EI+ H+ YY P I D++YD L R + A P+L P+ P K+G Sbjct: 10 EVENLRREINRHNQLYYVQDNPEISDAQYDTLISRLKELEEAHPELV---TPDSPTQKVG 66 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL--EPKIDGT 137 E + V H P LSL ++ +L + R+ KK +I F + EPK+DG Sbjct: 67 AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRV-----KKLLGNIPFQIDCEPKMDGL 121 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + Y GKF A RGDG GE+++ +R I +IP N P + EVRGEVY+SKN Sbjct: 122 AVALTYRDGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNG 181 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQY 255 F LN E G P+ANPRNAA+G LR+L+P+ R L+ F++ LG + + + + Sbjct: 182 FAKLNRERADKGLPPFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHW 241 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L +GF +N R NT YY +M + R++LPYD DG+V+KVD SLQ +L Sbjct: 242 QILDYFSKIGFRINPLNRLVNTLEEAKEYYRQMAANRASLPYDADGVVFKVDSVSLQHRL 301 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G+ R PRW I++KF +Q TRL I I +GRTG L P A LEPVN+GG ++ A LHN Sbjct: 302 GDVGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHN 361 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF----- 430 ED ++R +DIR GD V+++RAGEVIP+VV ++++R+P+++PF Sbjct: 362 ED---------DILR--KDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLF 410 Query: 431 -PSF----CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ CP+C + R G+ A H C ++C AQ +L+HFVSR A +I G Sbjct: 411 NPNLNRPACPVCGGEIYR----PAGE--AMHYC-ANVSCPAQFERQLEHFVSRGAMDIRG 463 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + L + ++ +D++ L +T + + G+ S N+ D+I Sbjct: 464 IG-ESLSVILAQQGLVKNV---SDLYYL------TTADLLQLPRMGEKSADNIIDAIADS 513 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L+R IF LG+RHVG E A L+++Y NI A L +P +G Sbjct: 514 KTRPLDRVIFGLGVRHVGNETATLLSRHY----------GNIWALAKTGLGELQTIPDIG 563 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--ENKKLVFTGTLQKIQR 663 D IA +IV ++ +N+ + L+E + +K V+ + + V TG L+ R Sbjct: 564 DKIASSIVAYFSEEKNVAVIRR-LEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSR 622 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +AQE + LG +++ T ++VG + GSKL KA+ +GVK ++E +F+ +L+Q Sbjct: 623 EEAQEKIRSLGGTAKDNVTKATSYLVVGADAGSKLAKARSMGVKELSEREFINMLEQ 679 >gi|206890248|ref|YP_002249789.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM 11347] gi|254781443|sp|B5YIF8|DNLJ_THEYD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206742186|gb|ACI21243.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM 11347] Length = 670 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 250/712 (35%), Positives = 403/712 (56%), Gaps = 54/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E +KE+ L +E++YH+ YY P+I D EYD + RR + + + P+ P Sbjct: 6 EDIKKEIEKLVKELNYHNYRYYVLDSPVISDEEYDMMLRRLKELEEKWGYIL----PDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G + K H P LSL+ ++IE+LR F R+ R ++ + +T+EPK Sbjct: 62 TQRVGAAPSEKFEKAEHREPMLSLDNAFSIEELRDFDARVKRLLGSSEE--VEYTVEPKY 119 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLN-IPEIIEVRGEVY 192 DG + + Y+ G A+ RGDG+ GED++ I+ I IP R+ ++ IPE I++RGEVY Sbjct: 120 DGLAVELSYKDGLLYKASTRGDGYVGEDITQNIKTIKAIPLRIEGVDKIPEEIDIRGEVY 179 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 ++ ++F +N E I G +ANPRNAASG +R+L+P+ +R L +G+G I Sbjct: 180 LNIDEFERINKERIEKGEPVFANPRNAASGSVRQLDPSITASRRLYMSCYGIGYVKGIEF 239 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K Q E ++ ++ FPV V+ A ++ E++ +R P++ DG V KV+ F L Sbjct: 240 KSQIEFIEWLKKGRFPVPAYVKLAKGIEEVIEAIKEIEKLRQGYPFETDGAVVKVNSFEL 299 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG + R PRW I++K+ Q T+L DI +GRTG++TPVA LEPV IGG ++ + Sbjct: 300 QRKLGTKTREPRWAIAYKYPAHQGITKLKDILASVGRTGVITPVAVLEPVKIGGVTVSRS 359 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D ++ +DIRVGD V+V+RAGEVIP ++ ++ + R + + P Sbjct: 360 TLHNWDEVE-----------RKDIRVGDYVIVERAGEVIPHIIGVVKDRRTGEEKEVKIP 408 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S+ VR+ G++ A +C C AQ ER+KHF SR A NIEGLG + + Sbjct: 409 EHCPVCGSKTVRE----PGEV--AVKCI-NFNCPAQVEERIKHFASRRAMNIEGLGDKTV 461 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + I+ D++ L RQ+ I+ + GF ++S L ++I K + +L Sbjct: 462 ELLHNK----GIIKHFVDLYKL--RQED----IKGLPGFAELSSKKLIEAIAKSKKTTLS 511 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R +++LGI VG ++ LA+++ ++ + +I A L+++P +G+ A+ Sbjct: 512 RLLYALGISQVGEYASKLLAQHFRKLED----LYHIKAEK------LVQIPQIGEKTAKT 561 Query: 612 IVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I +F+ N N+ A+E L LK +P E+ S ++ V TGTL K R + + Sbjct: 562 IEQFFNNEENLKAIEELKRMGLKVENPEF--EEEKKPSPLKGLTFVITGTLPK-PREEVK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E + + G VS+ +S+ TD ++VG++PGSKL KAQ L VK ++ E+FL +L+ Sbjct: 619 EMIEKAGGKVSSSVSKNTDYLLVGEDPGSKLAKAQALRVKTLSYEEFLKMLE 670 >gi|300311482|ref|YP_003775574.1| NAD-dependent DNA ligase [Herbaspirillum seropedicae SmR1] gi|300074267|gb|ADJ63666.1| NAD-dependent DNA ligase (contains BRCT domain type II) protein [Herbaspirillum seropedicae SmR1] Length = 688 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 251/701 (35%), Positives = 393/701 (56%), Gaps = 59/701 (8%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 +L +++ H+ YY +P I D+EYD L + A+ A P+L P+ P ++G Sbjct: 24 ALRADLNRHNYSYYVLDQPSIPDAEYDRLFQELQALETAHPELL---TPDSPTQRVGAGP 80 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 V H IP LSL ++ +D+ F R+ + + + + E K DG I++R Sbjct: 81 LPQFEPVRHDIPMLSLGNGFSDDDIEAFDKRVRDGLETLQE--VRYATELKFDGLAISLR 138 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLAL 201 YE G V AA RGDG +GE+V+A IR + IP R+ IP++++VRGEV + K+DF L Sbjct: 139 YENGVLVQAATRGDGTTGENVTANIRTVRAIPLRLHGEAIPQLLDVRGEVLMYKDDFARL 198 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEML 258 N G+K +ANPRNAA+G LR+L+ + IT R L FF +G+G +L Sbjct: 199 NQRQRDAGQKEFANPRNAAAGSLRQLD-SRITAQRTLRFFAYGIGVLEGADMPSSHSALL 257 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + LG PV G++ ++ + + R +LPY+IDG+VYKVD QKQLG Sbjct: 258 DWYQQLGLPVCKERAVVTGATGLLEFFRGIGAKRESLPYEIDGVVYKVDRLDQQKQLGFV 317 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +R+PR+ ++HKF ++A T + DI++Q+GRTG +TPVARL PV +GG +TNATLHNED Sbjct: 318 SRAPRFALAHKFPAQEALTVVQDIEVQVGRTGAITPVARLNPVFVGGVTVTNATLHNEDE 377 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 ++ +DI++GD V+V+RAG+VIP+VV + +R DA+ F P+ CP+C Sbjct: 378 VR-----------RKDIQIGDTVIVRRAGDVIPEVVAYVPEKRPADARAFVMPAACPVCG 426 Query: 439 SRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +VR + A RC+GG L CSAQ+ L+HF SR A +IEGLG+Q ++ Sbjct: 427 SPIVRAEDE------AVARCSGGWLKCSAQRKGGLQHFASRRAMDIEGLGEQLVEQLVDR 480 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + + PAD++ L + + + + S N+ D++ K ++ +L RFI++L Sbjct: 481 K----VVNTPADLYRL------GLSALAELDRMAEKSAQNVLDALQKSKSTTLARFIYAL 530 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG A+ LA+++ ++ I+A + L+ V VG ++A +I F+ Sbjct: 531 GIRHVGEATAKELARHFGG-------LDKILAASE---AQLLEVADVGPVVATSIRSFFD 580 Query: 618 NPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + N+ VE L ++G H + + + K V TGTL + R +A + + Sbjct: 581 DALNVELVEQLR-----AVGVHWPESAGVEAAAKHLAGKTFVLTGTLPNLSRDEASQLIE 635 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 G V+ +S+KT ++ G GSKL KA++LG+ I++E+ Sbjct: 636 AAGGKVTGSVSKKTTYVVAGAEAGSKLAKAEELGIAILDED 676 >gi|301052018|ref|YP_003790229.1| DNA ligase [Bacillus anthracis CI] gi|300374187|gb|ADK03091.1| DNA ligase [Bacillus cereus biovar anthracis str. CI] Length = 669 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 400/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPVCESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|229009789|ref|ZP_04167009.1| DNA ligase [Bacillus mycoides DSM 2048] gi|228751407|gb|EEM01213.1| DNA ligase [Bacillus mycoides DSM 2048] Length = 669 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R++ Q DD ++ + Sbjct: 59 -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++Q+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 AIQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLELER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKTINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMAYKGMKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKNIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|310768269|gb|ADP13219.1| NAD-dependent DNA ligase LigA [Erwinia sp. Ejp617] Length = 670 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 249/716 (34%), Positives = 417/716 (58%), Gaps = 55/716 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + +++ L + +++ Y+ P + D+EYD L + P+L S+ P Sbjct: 1 MESVQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAQHPELLTSDSPTQ 60 Query: 74 PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 + G LS+F +V H +P LSL+ ++ E F R+ + DD I F E Sbjct: 61 RV----GAAPLSVFEQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDD--ITFCCEL 114 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG +++ YEKG+ V AA RGDG +GE+++A +R I IP R+ NIPE +EVRGEV Sbjct: 115 KLDGLAVSLLYEKGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSE 248 ++ F +N++ + G+K +ANPRNAA+G LR+L+P R L FF +GLG + E Sbjct: 175 FMPLVGFEQMNEQARSSGQKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGE 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + LQ+ + G PV++ VR ++ ++ +Y+++++ R TL +DIDG+V KVD Sbjct: 235 M-PRSHRARLQRFKAWGLPVSDRVRLCHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDS 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G ++ Sbjct: 294 LALQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVLVAGVMV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L +++GDRV+++RAG+VIP+V+ ++ E +A+ Sbjct: 354 SNATLHNADEIERL-----------GLKIGDRVVIRRAGDVIPQVMSVV--ETGDNAREI 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +FP+ CP+C S V R G++VA RCTGGL C AQ+ LKHFVSR A +I+G+G+ Sbjct: 401 AFPTRCPVCGSDVER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDIDGMGE 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +D E ++ PA++F L + K+ + G S N+ +++ K + Sbjct: 455 KIIDQLVDKE----YVKNPAELFEL------TAGKLTGLDRMGPKSAQNVVNALVKAKQT 504 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + RF+++LGI VG A +LA ++ + ++ ++A + D +L+ V VG ++ Sbjct: 505 TFARFLYALGISEVGEATAANLAAHFGT-------LDALMAADLD---ALMAVQDVGKVV 554 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRH 664 A + F N + L+ + + + + + S K +V TG+L + R Sbjct: 555 ASHVRNFLDEESNREIIRLLVDKAGVNWPQVMVVKAEEIDSPFAGKTVVLTGSLSILSRD 614 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A++ + LGA VS +S+KTD++I G+ GSKL KA++LG+ +++E++ + LL + Sbjct: 615 EAKDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKARELGIDVIDEQEMIRLLGE 670 >gi|77360026|ref|YP_339601.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125] gi|123730523|sp|Q3IKB8|DNLJ_PSEHT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76874937|emb|CAI86158.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125] Length = 673 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/718 (35%), Positives = 398/718 (55%), Gaps = 62/718 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQ S+LEQ H YY P I D+EYD L ++ A+ P+L ++ P Sbjct: 7 EQINHLRSTLEQ----HSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITADSPT-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K+GG +V H +P LSL+ ++ ++ F RI ++ + F EPK+ Sbjct: 61 -QKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIKERLMSTEE--LTFCCEPKL 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG ++I Y G V AA RGDG +GE+V+ ++ I +P ++ + P +EVRGEV++ Sbjct: 118 DGLAVSIIYRDGVLVQAATRGDGLTGENVTQNVKTIRNVPLKLRGSDYPAELEVRGEVFM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE-IF 250 F N E G K + NPRNAA+G LR+L+ + IT R L F+ + G ++ Sbjct: 178 DNAGFEKFNIEAEKRGEKVFVNPRNAAAGSLRQLD-SKITAKRPLMFYAYSTGLVADGSI 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A+ Y+ L+K+ G P+ + ++YY ++ + R L Y+IDG+V K+++ + Sbjct: 237 AEDHYQQLEKLTDWGLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQKA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T+LLD++ Q+GRTG +TPVARLEPV +GG ++N Sbjct: 297 LQERLGFVARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L ++VGD V+++RAG+VIP++ +++ R DA+ F Sbjct: 357 ATLHNGDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CPIC S V + G+ VA RCTGGL C AQ+ + +KHF SR A +I+GLG + Sbjct: 406 PVTCPICDSHVEK----VEGEAVA--RCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKI 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D E I+ PAD+F L++ E++ G S NL ++ + +L Sbjct: 460 VDQLVDRE----LIKTPADLFILKQGH------FESLERMGPKSAKNLVTALQDAKATTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F++SLGIR G ++LA ++L+ +N IN I SL +V VG+I+A Sbjct: 510 AKFLYSLGIREAGEATTQNLANHFLTLENV---INASID-------SLTQVSDVGEIVAT 559 Query: 611 AIVEFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 + F+ N+ V AL++ E++P + + + V TGTL + R+ Sbjct: 560 HVRSFFAEQHNLDVVNALVEQGINWPELTPPSAQEQP-----LAGLVYVLTGTLNTLNRN 614 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+ + QLGA VS +S KTD ++ G+ GSKL KAQ LG+ ++ EE + LL+Q+N Sbjct: 615 DAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEEDLINLLEQHN 672 >gi|323140467|ref|ZP_08075395.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067] gi|322415035|gb|EFY05826.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067] Length = 679 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/709 (36%), Positives = 387/709 (54%), Gaps = 57/709 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E L +EI +++ YY P I D+EYD + R + +PD S + P ++G Sbjct: 17 EADKLRREIRHNEYLYYVLDAPEITDAEYDRMMVRLRELEARYPD---SIPADSPTQRVG 73 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G + +V H P LSL +++ E+LR F R+ + + + +EPKIDG Sbjct: 74 GRASSQFTEVRHLEPLLSLGNVFSAEELRAFDERVRSGLPAG--SKVEYVMEPKIDGLAC 131 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPEIIEVRGEVYISK 195 ++ YE GK V AA RGDG GE+V+A +R I +IP L + +PE+++VRGEVY+ + Sbjct: 132 SLIYENGKLVRAATRGDGVVGENVTANVRTIRSIPLTLKVPDGETVPELLDVRGEVYMPR 191 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 F+ LN++ G +ANPRNAA+G LR+L+P +R L+FF + L E Sbjct: 192 QAFMRLNEQRAERGESEFANPRNAAAGSLRQLDPQVTASRSLSFFAYYL--VGEGAQPKH 249 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + GF V+ + + Y + +R L YD DG V KV++ Q+ Sbjct: 250 SESLALLAHYGFKVSENYKVVENIDEAIKYIGDFNELRQGLSYDTDGAVIKVNDVYQQRI 309 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG + PRW ++K+ +QA T L DID ++GRTG+LTP A L PV + G++I+ ATLH Sbjct: 310 LGATGKDPRWATAYKYPPEQAETTLEDIDWRVGRTGVLTPTAVLTPVKLSGSVISRATLH 369 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED+I+ +DIR+GDRV++ +AGE+IP+V+ ++V +R D + + PS C Sbjct: 370 NEDFIR-----------AKDIRIGDRVVINKAGEIIPEVLRVVVEKRTGDEKEVAIPSVC 418 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C RV R AA RCT C A E L HFVSRDA NI+G G ++ Sbjct: 419 PECGWRVERQGEE------AAIRCTNP-HCPALGREGLIHFVSRDAMNIDGCGPSVINAL 471 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 A +R AD+++L++ K+E + G+ S NL ++ + + L++ + Sbjct: 472 LD----AGLVRDAADLYSLRK---DDLLKLERM---GEKSADNLLAALAESKKNELDKLL 521 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIRHVGA++AR LA + S + Q +A D +GD IA+++V Sbjct: 522 FALGIRHVGAKVARILATEFGSMEKLQQAQPEELAQIRD----------IGDKIAESVVT 571 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTLQKIQRHKAQEYV 670 + P NI VE L + + +S+ +N K LVFTGT+ + R +A+ Sbjct: 572 WLNVPANIDLVERL---AAAGLTMTFTPTASQEDNPFFGKTLVFTGTMPTLGRAEAKTMA 628 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +GA VS +S+KTD +I G GSKLEKAQQLGV +++E +FL LL+ Sbjct: 629 QDVGAKVSGSVSKKTDYVIAGAEAGSKLEKAQQLGVTVIDEAEFLRLLK 677 >gi|296046583|gb|ADG86433.1| NAD-dependent DNA ligase [Francisella novicida] Length = 673 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/718 (35%), Positives = 398/718 (55%), Gaps = 62/718 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQ S+LEQ H YY P I D+EYD L ++ A+ P+L ++ P Sbjct: 7 EQINHLRSTLEQ----HSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITADSPT-- 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K+GG +V H +P LSL+ ++ ++ F RI ++ + F EPK+ Sbjct: 61 -QKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIKERLMSTEE--LTFCCEPKL 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG ++I Y G V AA RGDG +GE+V+ ++ I +P ++ + P +EVRGEV++ Sbjct: 118 DGLAVSIIYRDGVLVQAATRGDGLTGENVTQNVKTIRNVPLKLRGSDYPAELEVRGEVFM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE-IF 250 F N E G K + NPRNAA+G LR+L+ + IT R L F+ + G ++ Sbjct: 178 DNAGFEKFNIEAEKRGEKVFVNPRNAAAGSLRQLD-SKITAKRPLMFYAYSTGLVADGSI 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A+ Y+ L+K+ G P+ + ++YY ++ + R L Y+IDG+V K+++ + Sbjct: 237 AEDHYQQLEKLTDWGLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQKA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW I++KF ++ T+LLD++ Q+GRTG +TPVARLEPV +GG ++N Sbjct: 297 LQERLGFVARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L ++VGD V+++RAG+VIP++ +++ R DA+ F Sbjct: 357 ATLHNGDEIARL-----------GVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CPIC S V + G+ VA RCTGGL C AQ+ + +KHF SR A +I+GLG + Sbjct: 406 PVTCPICDSHVEK----VEGEAVA--RCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKI 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D E I+ PAD+F L++ E++ G S NL ++ + +L Sbjct: 460 VDQLVDRE----LIKTPADLFILKQGH------FESLERMGPKSAKNLVTALQDAKATTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +F++SLGIR G ++LA ++L+ +N IN I SL +V VG+I+A Sbjct: 510 AKFLYSLGIREAGEATTQNLANHFLTLENV---INASID-------SLTQVSDVGEIVAT 559 Query: 611 AIVEFYQNPRNICAVEALLK------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 + F+ N+ V AL++ E++P + + + V TGTL + R+ Sbjct: 560 HVRSFFAEQHNLDVVNALVEQGINWPELTPPSAQEQP-----LAGLVYVLTGTLNTLNRN 614 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+ + QLGA VS +S KTD ++ G+ GSKL KAQ LG+ ++ EE + LL+Q+N Sbjct: 615 DAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTEEDLINLLEQHN 672 >gi|254448715|ref|ZP_05062173.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015] gi|198261723|gb|EDY86010.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015] Length = 673 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/707 (35%), Positives = 386/707 (54%), Gaps = 48/707 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + SL +++ H YY +P I D+EYD L R ++ +P+ S + P + Sbjct: 8 QQHIDSLREQLHQHAHAYYVLDEPSIPDAEYDRLFRELQSLEAQYPE---SHSDDSPTQR 64 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V H +P LSL +++ ++L F R+ + + + EPK+DG Sbjct: 65 VGAAPLDAFVSVEHEVPMLSLGNVFSDDELVAFDQRLRERLDYP--SELEYAAEPKLDGL 122 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEVYISK 195 I++ YE G V A RGDG GEDV+ I+ I +IP L + P+ +EVRGEVY+ K Sbjct: 123 AISLLYEDGVLVRGATRGDGSVGEDVTQNIKTIHSIPLRLPKRGDWPKRLEVRGEVYMPK 182 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 F A+N + G K +ANPRNAA+G LR+L+ +R L+ + + +G Sbjct: 183 AGFEAMNAKAREQGDKVFANPRNAAAGSLRQLDSRIAASRPLDMYCYSVGVFEGELPATH 242 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L + GF + G YY ++ R TLPY+IDG+VYKV+ LQ Sbjct: 243 SETLAMLGRWGFRICPESAVVTGASGCAEYYQQIGRARDTLPYEIDGVVYKVNSLKLQGD 302 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW +HKF + T L D++ Q+GRTG LTPVARLEPVN+ G +++NATLH Sbjct: 303 LGFVARAPRWATAHKFPPSEELTVLQDVEFQVGRTGALTPVARLEPVNVAGVVVSNATLH 362 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D +K +D+R+GD V+V+RAG+VIP+VV ++ R +A PS C Sbjct: 363 NMDEVK-----------RKDVRIGDTVIVRRAGDVIPEVVKSVLERRPKEAPAIVMPSHC 411 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V+R G+ VA RC+GGL CSAQ+ E +KHF SR A +I+G+G + +D Sbjct: 412 PVCGSDVIR----PEGEAVA--RCSGGLYCSAQRREAIKHFASRKALDIDGVGDKLIDQL 465 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E I D+F L Q S ++ G+ S T +++ + +L +F+ Sbjct: 466 VDGE----LIDHVDDLFHLTVEQLASLERM------GEKSATKAIEALENAKRTTLPKFL 515 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG AR+LA ++ ++ I+ + DD L+ V VG I+A + Sbjct: 516 FALGIREVGEVTARNLAMHF-------GDLEPIMQASEDD---LLAVADVGPIVAAHVKS 565 Query: 615 FYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ P NI ++ LL+ V I E+ + ++ V TGT ++R +A++ + Sbjct: 566 FFEQPHNIEVIDKLLEAGFVWEPIEVAEQK-EAVLDGHTYVLTGTFTAMKRDEAKQQLLA 624 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA VS +S+KT + GD+PGSK++KA +L V + EE L LL+ Sbjct: 625 LGAKVSGSVSKKTTAVFAGDSPGSKVDKAAELEVPVKTEEDLLELLK 671 >gi|227892258|ref|ZP_04010063.1| NAD-dependent DNA ligase [Lactobacillus salivarius ATCC 11741] gi|227865899|gb|EEJ73320.1| NAD-dependent DNA ligase [Lactobacillus salivarius ATCC 11741] Length = 672 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 253/714 (35%), Positives = 402/714 (56%), Gaps = 65/714 (9%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L +++ + YY P + DS YD +R + A PDL ++ P+ ++G Sbjct: 9 ELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSPS---QRVG 65 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G++ KV H IP LSL +++ E+L +F+ R+ ++K D ++ E KIDG I Sbjct: 66 GKVLSGFTKVNHDIPMLSLGDVFSKEELIEFLERLENSVEQKLD----YSCELKIDGLAI 121 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ YE GKF+ + RG+G GED++ ++ I IP + LN P IEVRGE Y+ K F+ Sbjct: 122 SLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIP--MELNEPVSIEVRGECYMPKKSFV 179 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM 257 LN + A G+ +ANPRNAA+G LR+L+ T IT R L+ F++ L + ++ K Q E Sbjct: 180 ELNTKREAEGQAVFANPRNAAAGSLRQLD-TKITASRNLSTFIYYLMEPEKLGIKTQTEA 238 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ GF VNN +Q T I +Y +E R+ LPYDIDG+V KV+ F++Q Q+G Sbjct: 239 LNKLESWGFKVNNESKQVKTKEEIFAYIDEATDQRANLPYDIDGIVLKVESFAVQSQVGN 298 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + PRW I++KF + T++LDI+ +GRTG++TP A +EPV + G + A+LHN D Sbjct: 299 TVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVARASLHNPD 358 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 Y++ +DIR+GD V + +AG++IP++ ++++ +R D+ + P+ CP C Sbjct: 359 YLR-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRTEDSVEYQIPTECPEC 407 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + +V L+ + A RC C A E L HF SR+A +I GLG + ++ + Sbjct: 408 GANLVH-LDDE-----VALRCINP-QCPALVKESLTHFASRNAMDIRGLGPRIIEQLYNR 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E I+ A I++L Q + K F + S NL +IN RN S+ER IF L Sbjct: 461 E----MIKDVAGIYSLTFEQLITLDK------FKEKSANNLLTAINNSRNNSIERLIFGL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA++AR LA+ Y S N A+ ++ I+ + +G II ++ ++ Sbjct: 511 GIRHVGAKVARILAENYKSMDNLAKAKSDEIS----------TIDSLGKIIGDSVEMYFA 560 Query: 618 NPRNICAVEALLKEVSPS------IGRH-----EKNVSSEIENKKLVFTGTLQKIQRHKA 666 + V LL E+ + +G+ E + S ++V TGTL ++R +A Sbjct: 561 DEH----VMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKRSEA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + ++ GA V+ +S+KTD++I G + GSKL KAQ+L V++MNE +F+ +++ Sbjct: 617 KSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEE 670 >gi|300118925|ref|ZP_07056636.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1] gi|298723541|gb|EFI64272.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1] Length = 669 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|228983547|ref|ZP_04143752.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776143|gb|EEM24504.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 669 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 397/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKEINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|326796428|ref|YP_004314248.1| DNA ligase [Marinomonas mediterranea MMB-1] gi|326547192|gb|ADZ92412.1| DNA ligase [Marinomonas mediterranea MMB-1] Length = 680 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/702 (36%), Positives = 387/702 (55%), Gaps = 50/702 (7%) Query: 28 ISYHDDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84 +S +D Y Y P + DSEYD L + I P + P+ P ++G + + Sbjct: 16 VSQLNDYSYSYHVKDDPKVPDSEYDRLYKALQLIELKNPQWIQ---PDSPTQRVGEKPDT 72 Query: 85 SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144 V H++ LSL+ ++ + + +F R+ + + D I F EPK+DG I++RYE Sbjct: 73 GFANVEHTVAMLSLDNAFDDDSMLEFNERVKKLLNESAD--IEFCCEPKLDGLAISLRYE 130 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEVYISKNDFLALND 203 G V RGDG SGED+++ IR I T+P L + P ++EVRGE+Y+ K F LN Sbjct: 131 DGVLVRGVTRGDGLSGEDITSNIRTIHTVPLKLRTDTPPPVVEVRGEIYMPKEGFEVLNA 190 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ--YEMLQK 260 K + NPRNAA+G LR+L+P +R L + +G SE + + Q Y+ L + Sbjct: 191 LAKQKDEKLFVNPRNAAAGSLRQLDPKITASRPLVLCAYSIG-FSEGWTQPQSHYDGLIQ 249 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + GF +N+ + + G +SYY ++ R L YDIDG+VYKVD + Q++LG AR Sbjct: 250 LGDWGFKINDRMERVTGIQGCLSYYEKLNQDRPALTYDIDGIVYKVDSIAKQQELGFIAR 309 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PRW I+ KF ++ T++ ID Q+GRTG +TPVARLEPV +GG ++NATLHN+D I Sbjct: 310 APRWAIARKFPAQEEITQIKGIDFQVGRTGAITPVARLEPVFVGGVTVSNATLHNKDEIA 369 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 L +RV D V+++RAG+VIP+VV +++ +R +P CP+C S Sbjct: 370 RL-----------GVRVNDWVIIRRAGDVIPQVVQVVLEKRPEGTVSVEYPDSCPVCGSH 418 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 + G+ V RC GGL C+AQ E LKHFVSR A +I+GLG + ++ ++ Sbjct: 419 TEQ----VEGEAVI--RCAGGLVCNAQLKESLKHFVSRKAMDIDGLGDKLIEQLVDNK-- 470 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 ++ PADI+ L ++ ++ ++ GD SV L SI+ +N RFI++LGIR Sbjct: 471 --LVQTPADIYKLHEKE----ARLLDLERMGDKSVDKLLTSIDASKNTLFNRFIYALGIR 524 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 VG A++L K+Y + Q D SLI+V VG I+AQ + F++ + Sbjct: 525 EVGEATAKALTKHYKALDALIQA----------DQESLIQVSDVGPIVAQHVQRFFEQEQ 574 Query: 621 NICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 NI + L++ E SE + K V TGTL + R + +E + QLGA VS Sbjct: 575 NIVVINELIELGIQWDAPAEAAGESEQPLLGKTYVVTGTLNEFTREEIKEKLQQLGAKVS 634 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +S KTD ++ G+ GSKL KAQ L V +++E+ + L++ Sbjct: 635 GSVSGKTDCLVAGEKAGSKLAKAQSLNVPVLDEQGIIAFLKE 676 >gi|228989472|ref|ZP_04149457.1| DNA ligase [Bacillus pseudomycoides DSM 12442] gi|228770197|gb|EEM18776.1| DNA ligase [Bacillus pseudomycoides DSM 12442] Length = 669 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E+A++ + L ++ + Y+ P + D+EYD + + P+ + P Sbjct: 1 MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIEDSP 60 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 ++GG + L +F KVTH P LSL +N DLR F R+ Q DD+++ + Sbjct: 61 T---VRVGGAV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDSNVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+FV A RGDG +GED++ ++ I IP L L +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIP--LRLKEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G LR+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADVKEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIASHSESLNFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPNLNYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQDSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVIVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S +VR L + A RC AC AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACDSELVR-LEEEV-----ALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F+++ IR AD++ L + Q + FG+ S + L +I + S Sbjct: 454 VITQLFEAD----YIRTFADLYPLTQEQLLQLER------FGEKSASKLVQAIETSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+LA+++ + + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTLAEHFETMDHLVKATEEELKEINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVS-----PSIGRHE-KNVSSEIENKKLVFTGTLQKIQR 663 Q+IV ++ N ++ + KE I R + +N++S K +V TG L+ + R Sbjct: 554 QSIVTYFDN-EDVLELLQQFKEYGVNMTYKGIKRADLQNIASYFAGKTIVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + +LG V+ +S+ TD+++ G+ GSKL +A++ +++ NEE+FL Sbjct: 613 SEAKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFL 664 >gi|163938297|ref|YP_001643181.1| NAD-dependent DNA ligase LigA [Bacillus weihenstephanensis KBAB4] gi|229165272|ref|ZP_04293059.1| DNA ligase [Bacillus cereus AH621] gi|254781256|sp|A9VRG3|DNLJ_BACWK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|163860494|gb|ABY41553.1| DNA ligase, NAD-dependent [Bacillus weihenstephanensis KBAB4] gi|228618097|gb|EEK75135.1| DNA ligase [Bacillus cereus AH621] Length = 669 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R++ Q DD ++ + Sbjct: 59 -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++Q+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 AIQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLELER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKTINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|295702476|ref|YP_003595551.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319] gi|294800135|gb|ADF37201.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319] Length = 668 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 250/720 (34%), Positives = 401/720 (55%), Gaps = 63/720 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A+ + L ++ + YY +P + D+EYD L I +FP+L + Sbjct: 1 MEFETAKSRVQELRDLLNQYGYEYYVLDQPSVPDAEYDKLMNELIEIEDSFPELKTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +IGG++ + KV H LSL +N EDLR F R+ ++ ++ + E Sbjct: 58 DSPTQRIGGQVLDAFEKVQHQTSMLSLGNAFNEEDLRDFDRRV----RQAVEDEFSYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G V A RGDG +GE+++ ++ I +IP L + P +EVRGE Sbjct: 114 LKIDGLAVSLRYEDGYLVLGATRGDGTTGENITENLKTIRSIP--LRIKEPLSMEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ + F ALN+ + P+ANPRNAA+G LR+L+P R L+ FV+ + T E+ Sbjct: 172 FMPRKSFKALNEAKMERDEVPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYAMTDTGELE 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N + T +++Y ++ R L YDIDG+V KVD F Sbjct: 232 IDSHSESLNLLDELGFKTNKERQTCETIDDVIAYIESWQTQRPELSYDIDGIVVKVDSFD 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG A+SPRW I++KF ++ T+L++I++ +GRTG++TP A LEPV + G + Sbjct: 292 QQAELGTTAKSPRWAIAYKFPAEEVVTKLVNIELTVGRTGVITPTAILEPVQVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I +R + Q F+ Sbjct: 352 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIEEKRTGEEQEFTM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR L + A RC +C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTHCPECESELVR-LEEEV-----ALRCINP-SCPAQIREGLIHFVSRNAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ + I+ ADI+TL ++Q ++ G+ S NL +I + SL Sbjct: 454 ISQLFREQ----LIKDVADIYTLTKQQLIELERM------GEKSADNLIAAIEASKENSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ A++LA+++ + I+ + D+ L+ + +G +A Sbjct: 504 ERLLFGLGIRHVGAKAAKTLAQHF-------ETIDKLTKATYDE---LVAINEIGAKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEV----------SPSIGRHEKNVSSEIENKKLVFTGTLQK 660 AIV ++ V+ L+ E+ P + E NV S K +V TG L++ Sbjct: 554 AIVAYFTQEE----VQELIHELKEYGVNLTYKGPKLVSVE-NVDSVFAGKTVVLTGKLEQ 608 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R++A+ + LG V+ +S+KTD+++ G+ GSKL KA +L +++ +E + L L + Sbjct: 609 LSRNEAKAQIEALGGKVTGSVSKKTDLVVAGEEAGSKLTKANELEIEVWDEARLLTELNK 668 >gi|229154059|ref|ZP_04282184.1| DNA ligase [Bacillus cereus ATCC 4342] gi|228629339|gb|EEK86041.1| DNA ligase [Bacillus cereus ATCC 4342] Length = 669 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 397/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQQSLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKEINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKNIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|73748436|ref|YP_307675.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1] gi|123759761|sp|Q3ZX08|DNLJ_DEHSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|73660152|emb|CAI82759.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1] Length = 677 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/717 (35%), Positives = 391/717 (54%), Gaps = 63/717 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ +L +EI+ H+ YY P I D++YD L RR + A P+L P+ P K+G Sbjct: 7 EVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELV---TPDSPTQKVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL--EPKIDGT 137 E + V H P LSL ++ +L + R+ KK +I F + EPK+DG Sbjct: 64 AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRV-----KKLLGNISFQIDCEPKMDGL 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + Y GKF A RGDG GE+++ +R I +IP N P + EVRGEVY+SKN Sbjct: 119 AVALTYRNGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNG 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQY 255 F LN E G +ANPRNAA+G LR+L+P+ R L+ F++ LG + + + + Sbjct: 179 FAKLNRERADKGLPLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHW 238 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L +GF +N R NT YY +M + R++LPY+ DG+V+KVD SLQ +L Sbjct: 239 QILDYFSKIGFRINPLNRLVNTMEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHRL 298 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G+ R PRW I++KF +Q TRL I I +GRTG L P A LEPVN+GG ++ A LHN Sbjct: 299 GDVGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHN 358 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF----- 430 ED ++R +DIR GD V+++RAGEVIP+VV ++++R+P+++PF Sbjct: 359 ED---------DILR--KDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLF 407 Query: 431 -PSF----CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ CP+C + R G+ A H CT ++C AQ +L+HFVSR A +I G Sbjct: 408 NPNLNRPACPVCGGEIYR----PAGE--AMHYCT-NVSCPAQFERQLEHFVSRGAMDIRG 460 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + L + ++ +D++ L +T + + G+ S N+ D+I Sbjct: 461 IG-ESLSVILAQQGLVKNV---SDLYYL------TTADLLQLPRMGEKSADNIIDAIADS 510 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L+R IF LG+RHVG E A L+++Y NI A L +P +G Sbjct: 511 KTRPLDRVIFGLGVRHVGNETATLLSRHY----------GNIWALAKTGLGELQTIPDIG 560 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--ENKKLVFTGTLQKIQR 663 D IA +IV ++ +N+ + L+E + +K V+ + + V TG L+ R Sbjct: 561 DKIASSIVAYFSEEKNVAVIRR-LEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSR 619 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +AQE + LG +++ T ++VG + GSKL KA+ +GVK ++E +F+ +L+Q Sbjct: 620 EEAQEKIRSLGGTAKDNVTKATSYLVVGADAGSKLAKARSMGVKELSEREFINMLEQ 676 >gi|299783520|gb|ADJ41518.1| DNA ligase, NAD-dependent [Lactobacillus fermentum CECT 5716] Length = 679 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/727 (34%), Positives = 407/727 (55%), Gaps = 67/727 (9%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ +QA+ EL+ L +++ YY+ P + D YD +R I FPDL Sbjct: 7 VSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQRFPDLVV- 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--- 125 P+ P ++GG L KVTH IP LS+ ++++ +L F R + DNS Sbjct: 66 --PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSLAELADFNRR-------QQDNSDVK 116 Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + LE KIDG +++ YE G+ V + RG+G GEDV+ ++ I +IP+VL P Sbjct: 117 VDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPE--PL 174 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242 +E RGE Y+ K F+ LN+ A G+ +ANPRNAA+G LR+L+P R L+ F++ Sbjct: 175 SLEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTFMYY 234 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + Q + L+KMR LGF VN R ++ + +Y E R LPY IDG+ Sbjct: 235 VPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGIDGI 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KV++ + Q LG + PRW I++KF ++ +T + DI+ +GRTG +TP A ++PV Sbjct: 295 VEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMDPVQ 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ A+LHN DY+ +DIR+GD VL+ +AG++IP++ +I+ +R Sbjct: 355 LAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIEKRP 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D++P+ P+ CP C + +V L+ + A RC + C AQ E L HF SR+A N Sbjct: 404 ADSKPYEVPTTCPECGADLVH-LDDEV-----ALRCVNPM-CPAQIKEGLAHFASRNAMN 456 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLG + ++ + ++ AD++ L+ Q + K FG+ S++NL +I Sbjct: 457 IDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLTLPK------FGEKSISNLLTAI 506 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 R+ S ER +F LGIRHVGA++A+ LA + S ++ ++A D ++ V Sbjct: 507 ANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKS-------VDALMAA---DAATISAVD 556 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVFT 655 +G II A+ ++QN + + A LKEV +P+ E S+E K++V T Sbjct: 557 SIGPIIGDAVATYFQN-EQVHQLIAELKEVGVNMDYLAPTTSATE---SAEWAGKRVVLT 612 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G L K+ R +AQE+++ GA V+ +S+KTD++I G+ GSKLEKAQ LG+++ +E++F Sbjct: 613 GKLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFD 672 Query: 716 FLLQQYN 722 +++ N Sbjct: 673 QAMKEEN 679 >gi|228931797|ref|ZP_04094693.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827777|gb|EEM73515.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 669 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|301299742|ref|ZP_07205992.1| DNA ligase (NAD(+)) [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852673|gb|EFK80307.1| DNA ligase (NAD(+)) [Lactobacillus salivarius ACS-116-V-Col5a] Length = 672 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 251/711 (35%), Positives = 403/711 (56%), Gaps = 59/711 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L +++ + YY P + DS YD +R + A PDL ++ P+ ++G Sbjct: 9 ELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSPS---QRVG 65 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G++ KV+H IP LSL +++ E+L +F+ R+ ++K D ++ E KIDG I Sbjct: 66 GKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLERLENSVEQKLD----YSCELKIDGLAI 121 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ YE GKF+ + RG+G GED++ ++ I IP + LN P IEVRGE Y+ K F+ Sbjct: 122 SLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIP--MELNEPVSIEVRGECYMPKKSFV 179 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM 257 LN + A G+ +ANPRNAA+G LR+L+ T IT R L+ F++ L + ++ K Q E Sbjct: 180 ELNTKREAEGQAVFANPRNAAAGSLRQLD-TKITASRNLSTFIYYLMEPEKLGIKTQTEA 238 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ GF VNN +Q T I +Y +E R+ LPYDIDG+V K + F++Q Q+G Sbjct: 239 LDKLESWGFKVNNESKQVKTKEEIFAYIDEATDQRANLPYDIDGIVLKAESFAVQSQVGN 298 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + PRW I++KF + T++LDI+ +GRTG++TP A +EPV + G + A+LHN D Sbjct: 299 TVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVARASLHNPD 358 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 Y+K +DIR+GD V + +AG++IP++ ++++ +R D+ + P+ CP C Sbjct: 359 YLK-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRPEDSVEYQIPTECPEC 407 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +++V L+ + A RC C A E L HF SR+A +I GLG + ++ + Sbjct: 408 GAKLVH-LDDE-----VALRCINP-QCPALVKESLTHFTSRNAMDIRGLGPRIIEQLYNR 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E I+ A I++L Q + K F + S NL +I+ RN S+ER IF L Sbjct: 461 E----MIKDVAGIYSLTFEQLITLDK------FKEKSANNLLTAIDNSRNNSIERLIFGL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA++AR LA+ Y S N A+ ++ I+ + +G+II + VE Y Sbjct: 511 GIRHVGAKVARILAENYKSMDNLAKAKSDEIS----------TIDSLGEIIGDS-VEMYF 559 Query: 618 NPRNICAVEALLKEVSPSI--------GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ + L++ ++ + E + S ++V TGTL ++R +A+ + Sbjct: 560 ADEHVMELLDELRQAGVNMEFLGQTREEQLESSTDSSFNGLRVVLTGTLDTLKRSEAKSW 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GA V+ +S+KTD++I G + GSKL KAQ+L V++MNE +F+ +++ Sbjct: 620 LEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEE 670 >gi|319762938|ref|YP_004126875.1| DNA ligase, nad-dependent [Alicycliphilus denitrificans BC] gi|330825018|ref|YP_004388321.1| DNA ligase [Alicycliphilus denitrificans K601] gi|317117499|gb|ADU99987.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans BC] gi|329310390|gb|AEB84805.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans K601] Length = 717 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 261/743 (35%), Positives = 396/743 (53%), Gaps = 82/743 (11%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +E R +L+ E YY +P + D+EYD + ++ A+ A+P L Sbjct: 20 ASKVEALRAQLNQWAHE-------YYVLDEPSVPDAEYDRVFQQLQALEGAYPALV---T 69 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQ-KKDDNSIF 127 P+ P ++ G + L V H + LS+ + E F RI R + +D + Sbjct: 70 PDSPTQRVIGAVMNGLAPVRHRVAMLSIRTETDTEASGAEAFDARIRRELKLAPEDPPVE 129 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN------- 180 + EPK DG +++RYE G+ V AA RGDG GEDV+ IR I IP L L+ Sbjct: 130 YVAEPKFDGLAMSLRYEHGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLQLSAPTLGAD 189 Query: 181 --------------------IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220 P ++EVRGEVY+ + DF LN+ G K + NPRNAA Sbjct: 190 ASSLPPEGARFALGRPGGETAPPVLEVRGEVYMRRADFEQLNERQREKGDKTFVNPRNAA 249 Query: 221 SGILRRLNP-TDITRYLNFFVHGLGKT--SEIFAKGQYEMLQKMRCLGFPVNNGVRQANT 277 +G +R+L+ R L+FF +GLG+ FA Y +LQ+++ GFPV VR A Sbjct: 250 AGAVRQLDSGIAAQRPLSFFAYGLGEVEGGPEFAT-HYALLQRLKAWGFPVAAQVRIALG 308 Query: 278 FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAST 337 G+++++ ++ + R LPYDIDG+VYKV+ +LQ+QLG R PRW ++HK+ ++ T Sbjct: 309 APGLIAFHQQIGAERDQLPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMMT 368 Query: 338 RLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRV 397 R+ ID+Q+GRTG LTPVARL PV +GG +TNATLHN ++ + +RV Sbjct: 369 RVEGIDVQVGRTGKLTPVARLAPVFVGGVTVTNATLHNLFELR-----------RKRVRV 417 Query: 398 GDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457 GD+V+V+RAG+VIP+VV ++ R F P CPIC S VVR+ G++ HR Sbjct: 418 GDQVIVRRAGDVIPEVVGVVPAPRASYVPNFRMPRQCPICASTVVRE----PGEV--NHR 471 Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517 C+GGL C AQ+ + + HF R A +IEGLG++ +D IR D+F L Sbjct: 472 CSGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVDGH----VIRTLPDLFRL---- 523 Query: 518 QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577 + + + S N+ D++ K + +L RF+F LGIRHVG A+ LA+++ + Sbjct: 524 --DLPTLAGLDRMAEKSAQNVLDALQKSKQTTLPRFLFGLGIRHVGEATAKDLARHFGA- 580 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSI 636 ++ I+ D L++V VG ++A++I F+ P N V L + V+ Sbjct: 581 ------LDAIMDAGVD---QLLQVNDVGPVVAESIHTFFAQPHNREVVGQLRECGVAWEE 631 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 G + + K +V TGTL + R +A++ + GA V+ +S+KT ++ G GS Sbjct: 632 GEPTAGATLPLAGKTIVLTGTLPTLSRDEAKDMLEAAGAKVAGSVSKKTHYVVAGAEAGS 691 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQ 719 KLEKAQ LG+ +++E+ LL+ Sbjct: 692 KLEKAQALGIPVLDEDGLRALLR 714 >gi|75759916|ref|ZP_00739987.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899023|ref|ZP_04063296.1| DNA ligase [Bacillus thuringiensis IBL 4222] gi|74492583|gb|EAO55728.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228860598|gb|EEN04985.1| DNA ligase [Bacillus thuringiensis IBL 4222] Length = 669 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 397/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIELEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSVRVGGTI-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD++ L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G++ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGESAGSKLAQAEKHNVEVWNEERFL 664 >gi|52144941|ref|YP_081888.1| NAD-dependent DNA ligase LigA [Bacillus cereus E33L] gi|81689708|sp|Q63GS3|DNLJ_BACCZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|51978410|gb|AAU19960.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus cereus E33L] Length = 669 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKTINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|254724765|ref|ZP_05186548.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. A1055] Length = 669 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q+ DD ++ + Sbjct: 59 -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QEIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|218895413|ref|YP_002443824.1| DNA ligase, NAD-dependent [Bacillus cereus G9842] gi|228963387|ref|ZP_04124548.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|254781550|sp|B7IUW5|DNLJ_BACC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218545091|gb|ACK97485.1| DNA ligase, NAD-dependent [Bacillus cereus G9842] gi|228796281|gb|EEM43728.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001] Length = 669 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 397/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSVRVGGTI-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD++ L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G++ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGESAGSKLAQAEKHNVEVWNEERFL 664 >gi|49479078|ref|YP_034626.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118476055|ref|YP_893206.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis str. Al Hakam] gi|225862344|ref|YP_002747722.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB102] gi|229182688|ref|ZP_04309929.1| DNA ligase [Bacillus cereus BGSC 6E1] gi|81397398|sp|Q6HP94|DNLJ_BACHK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215395|sp|A0R906|DNLJ_BACAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781551|sp|C1EV74|DNLJ_BACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49330634|gb|AAT61280.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415280|gb|ABK83699.1| NAD-dependent DNA ligase [Bacillus thuringiensis str. Al Hakam] gi|225789655|gb|ACO29872.1| DNA ligase (NAD(+)) [Bacillus cereus 03BB102] gi|228600773|gb|EEK58352.1| DNA ligase [Bacillus cereus BGSC 6E1] Length = 669 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|229089420|ref|ZP_04220691.1| DNA ligase [Bacillus cereus Rock3-42] gi|228693897|gb|EEL47589.1| DNA ligase [Bacillus cereus Rock3-42] Length = 669 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSEALDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|294497111|ref|YP_003560811.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551] gi|294347048|gb|ADE67377.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551] Length = 668 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 250/720 (34%), Positives = 401/720 (55%), Gaps = 63/720 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + E A+ + L ++ + YY +P + D+EYD L I +FP+L ++ P Sbjct: 1 MEFETAKSRVQELRDLLNQYGYEYYVLDQPSVPDAEYDKLMNELIEIEESFPELKTADSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 +IGG++ + KV H LSL +N EDLR F R+ ++ + + E Sbjct: 61 T---QRIGGQVLDAFEKVQHQTSMLSLGNAFNEEDLRDFDRRV----RQAVGDEFSYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G V A RGDG +GE+++ ++ I +IP L + P +EVRGE Sbjct: 114 LKIDGLAVSLRYEDGYLVLGATRGDGTTGENITENLKTIRSIP--LRIKEPLSMEVRGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ + F ALN+ + P+ANPRNAA+G LR+L+P R L+ FV+ + T E+ Sbjct: 172 FMPRKSFEALNEAKMERDEVPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYAMTDTGELE 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N + T +++Y ++ R L YDIDG+V KVD F Sbjct: 232 IDSHSESLNLLDELGFKTNRERQTCETIDDVIAYIESWQTQRPELSYDIDGIVVKVDSFD 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG A+SPRW I++KF ++ T+L++I++ +GRTG++TP A LEPV + G + Sbjct: 292 QQAELGTTAKSPRWAIAYKFPAEEVVTKLVNIELTVGRTGVITPTAILEPVQVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I +R + Q F+ Sbjct: 352 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIEEKRTGEEQEFTM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C+S +VR G++ A RC +C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 PTHCPECESELVR----LEGEV--ALRCINP-SCPAQIREGLIHFVSRNAMNIDGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ + I+ ADI+TL ++Q ++ G+ S NL +I + SL Sbjct: 454 ISQLFREQ----LIKDVADIYTLTKQQLIELERM------GEKSADNLIAAIGASKKNSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ A++LA+++ + I+ + D+ L+ + +G +A Sbjct: 504 ERLLFGLGIRHVGAKAAKTLAQHF-------ETIDKLTKATYDE---LVAINEIGAKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEV----------SPSIGRHEKNVSSEIENKKLVFTGTLQK 660 AIV ++ V+ L+ E+ P + E NV S K +V TG L++ Sbjct: 554 AIVAYFTQEE----VQELIHELKEYGVNLTYKGPKLVSVE-NVDSVFAGKTVVLTGKLEQ 608 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R++A+ + LG V+ +S+KTD+++ G+ GSKL KA +L +++ +E + L L + Sbjct: 609 LSRNEAKAQIEALGGKVTGSVSKKTDLVVAGEEAGSKLTKANELEIEVWDEARLLTELNK 668 >gi|46447394|ref|YP_008759.1| NAD-dependent DNA ligase LigA [Candidatus Protochlamydia amoebophila UWE25] gi|81626502|sp|Q6MAB5|DNLJ_PARUW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|46401035|emb|CAF24484.1| probable DNA ligase [Candidatus Protochlamydia amoebophila UWE25] Length = 665 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 248/705 (35%), Positives = 400/705 (56%), Gaps = 48/705 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +K+ L EI +H+ YY +PII D E+DAL ++ + I + P+ P+ +N Sbjct: 3 TQKDYEKLCHEIWHHNKLYYIEHQPIISDEEFDALLKKLEEIERSHPEWITEFSPSQRVN 62 Query: 77 KIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 E S FK V H P LSL ++ E++ FI R+ + K+ + F++E K+D Sbjct: 63 ----ESLTSGFKTVAHRTPMLSLANTYSKEEIEDFIKRLQKLVGKRQ---VEFSVELKMD 115 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYIS 194 G IT YE+G F RG+G G+D++ +R I +P LS N+P+ +E+RGEV++ Sbjct: 116 GIAITAIYEQGIFKRGITRGNGKRGDDITTNMRMIENLPLQLSGENLPDFLEIRGEVFMP 175 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 + FL LN++ + G +ANPRNAA+G L+ L+P + R L +GL + S K Sbjct: 176 RQVFLQLNEQKLQDGEVLWANPRNAAAGSLKLLDPKMVAERRLAVVFYGLAEDSSASIKK 235 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q E+ R +G P I + E++S+R+ LPYDIDG+V K+++F QK Sbjct: 236 QAEVPSFFRSIGLPALEHHAYCQNIEQIWKFAEEIRSLRTILPYDIDGIVIKLNDFKDQK 295 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +SPRW I++KFA +QA TR++DI +QIGRTG+LTPVA LEP+ + G+ I A+L Sbjct: 296 RLGVTGKSPRWAIAYKFAAEQAKTRIIDITVQIGRTGVLTPVAELEPIFLSGSTIARASL 355 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 +N++ ++ +DIR+GD V +++ G+VIPKV+++ +++R +QP+ P + Sbjct: 356 YNQEEVQ-----------RKDIRIGDLVTIEKGGDVIPKVLNVELSQRPLHSQPWQMPLY 404 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C ++V+ + A RC +C+ QQ+ +L +FV + A +I+ +G++ + Sbjct: 405 CPSCGTQVINIIGE------VAVRCPNEDSCTEQQIRKLIYFVGKQAMDIKHMGEKIVIQ 458 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ F I +P+DIF L Q I + F ++ NL SI + +++SLERF Sbjct: 459 LFQK---GF-IHLPSDIFALTEGQ------ISQLTNFKTKAIQNLMRSIEESKHVSLERF 508 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I +L I+++G A LA A I ++ N +D LI++ VG +AQA+V Sbjct: 509 IMALEIKYIGIGTAELLAAR-------AGTIETLMQLNEED---LIKIEGVGGKVAQAVV 558 Query: 614 EFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 E +QNP++ V LL+ V P + + + K V TG+L+ R A + + Sbjct: 559 EHFQNPKHRQEVYRLLELGVCPQSKTVQIFTNHAFQGKIFVLTGSLEHYTRQSAASLIKE 618 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 G VS +SRKT+ ++ G PGSKL+KA+ LG+ ++NE++F+ L Sbjct: 619 RGGKVSDSVSRKTNYVVAGAEPGSKLDKARTLGIPVLNEKEFISL 663 >gi|134300185|ref|YP_001113681.1| NAD-dependent DNA ligase [Desulfotomaculum reducens MI-1] gi|190359251|sp|A4J703|DNLJ_DESRM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|134052885|gb|ABO50856.1| DNA ligase, NAD-dependent [Desulfotomaculum reducens MI-1] Length = 670 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 249/709 (35%), Positives = 390/709 (55%), Gaps = 48/709 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q++ + +L +EI++H+ YY +P I D++YD L + + P+L P+ P Sbjct: 6 QQSKARVEALRREINHHNYQYYVLDQPTITDAQYDQLMQELLRLEERHPELV---TPDSP 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG++ V H IP LSL + DLR+F R+ + ++ + + +E KI Sbjct: 63 TQRVGGQVQRGFSSVPHKIPMLSLGNAFGEGDLREFDRRVRSYLPGEE---VKYVVELKI 119 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I++ YEKG V A RGDG GED++ ++ I IP L+ +P +EVRGE Y+ Sbjct: 120 DGLAISLWYEKGLLVRGATRGDGELGEDITINLKTIRAIPLRLTQEVP-FLEVRGEAYMP 178 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K+ F+ LN+ G +ANPRNAA+G LR+L+P R L+ F++ +G Sbjct: 179 KDSFVRLNEAREEAGEPLFANPRNAAAGSLRQLDPKITAARNLSVFMYAIGYIEGAKPPS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L ++ LG +N + + ++ + ++ ++ R LPY IDG+V KV+ Q+ Sbjct: 239 HAESLAWLKELGIRINPDHQVCGSIDEVIDFISQWQAKRYQLPYAIDGMVIKVNSLEQQQ 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +SPRW I++KF +QA + + DI I++GRTG+LTP A LEPV + G ++ ATL Sbjct: 299 RLGTTMKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTTVSKATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED I+ +DIR+GD+ LV++AG++IP++V + +R + PF P Sbjct: 359 HNEDIIR-----------QKDIRIGDKALVQKAGDIIPEIVQVYPEKRTGNEVPFILPVT 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + VVR AAHRCT CSA+ E + HFVSR A +I GLG+ ++ Sbjct: 408 CPECGAEVVRVAGE------AAHRCTNE-NCSAKSREGIIHFVSRSAMDIMGLGEGIVNQ 460 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 K ++ PAD++ L+ ++ G S L +I +N SL + Sbjct: 461 LIK----GGLVKDPADLYDLKYEDLIRQERM------GARSSQKLLAAIEASKNNSLGQL 510 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIRHVG A+ LA+ + S Q Q A D L + +G IA++I+ Sbjct: 511 LFGLGIRHVGERAAKILARQFGSMQALMQ------ATAED----LTGISEIGPRIAESIM 560 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVT 671 E++ N +E L K + E+ S++ + K V TGTL+ R +AQ + Sbjct: 561 EYFSRQENQGLIERLSKAGVNMLEEVEQTESTDQTLSGKTFVVTGTLEGFSRQEAQRAIE 620 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G VS +S+KT+ ++VG+NPGSK +KA+QLG+ I+ E+ F+ LLQQ Sbjct: 621 ERGGKVSGSVSKKTNYVVVGENPGSKHDKARQLGITILTEQDFVKLLQQ 669 >gi|91793866|ref|YP_563517.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217] gi|123165936|sp|Q12L82|DNLJ_SHEDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91715868|gb|ABE55794.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217] Length = 670 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 251/708 (35%), Positives = 391/708 (55%), Gaps = 57/708 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++++L E++ H+ YY P + D+ YD L ++ A+ P+L +S+ P+ ++G Sbjct: 7 QIANLVNELNQHNIKYYVDDAPSVTDAYYDKLMQQLLALEAEHPELIQSDSPS---RRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G +VTH P LSL+ + D F RI ++ + EPK+DG + Sbjct: 64 GHALDKFSQVTHLKPMLSLDNAFEQADFEAFNKRI-----TDKVGTVDYVCEPKLDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDF 198 +I Y G+F AA RGDG GED++ +R I +IP L + PE++EVRGEV++ K F Sbjct: 119 SITYRNGQFERAATRGDGTVGEDITENVRTIKSIPMGLRGDGYPELVEVRGEVFMPKAAF 178 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---EIFAKGQ 254 ALN A G K + NPRNAA+G LR+L+ +R L F+ + LG + Sbjct: 179 DALNARQQAKGDKTFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGEVQPMEPSH 238 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + L +++ G PV+ V+ ++ + +YY+++ + R L Y+IDG+V KV+ Q Sbjct: 239 FGQLAQLKRWGLPVSQEVKLCDSLEKVYAYYDDILNRRGQLSYEIDGVVIKVNAIPKQLS 298 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A++PRW I++KF ++ T L +D Q+GRTG +TPVARL+ V +GG ++NATLH Sbjct: 299 LGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLQAVFVGGVTVSNATLH 358 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L +++GD V+++RAG+VIP++V I+ +R DAQ FP+ C Sbjct: 359 NADEIARL-----------GVKIGDTVIIRRAGDVIPQIVAIVPEKRPQDAQNIVFPTHC 407 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+CQS V R G+ VA RC+GGL C AQ+ E +KHF SR A NI+G+G + ++ Sbjct: 408 PVCQSLVER----LEGEAVA--RCSGGLFCEAQRKEAIKHFASRKALNIDGMGDKIVEQL 461 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E ++ PAD+F L T ++ S T L +I+ + +L RFI Sbjct: 462 IDKE----LVQSPADLFGLTASMMTMLERMAM------KSATKLVAAIDAAKTTTLARFI 511 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +SLGIR VG A +LA ++ S + A L+ V VG+I+A+ I Sbjct: 512 YSLGIREVGEATAANLANHFKS----------LAAVREAGVEQLLEVADVGEIVAKHIRH 561 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKAQEYV 670 F+ N+ V+ LL + I E +E ++ + V TGTL ++ R++A+ + Sbjct: 562 FFDQAHNLEVVDKLL---AAGINWPEITAVAEDELRLKGQTWVLTGTLTQLNRNEAKAQL 618 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK+++E + L L Sbjct: 619 QALGAKVAGSISKNTDCLVAGEAAGSKLAKAQELGVKVIDETELLVFL 666 >gi|42779416|ref|NP_976663.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 10987] gi|81411242|sp|Q73EM3|DNLJ_BACC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|42735332|gb|AAS39271.1| DNA ligase, NAD-dependent [Bacillus cereus ATCC 10987] Length = 669 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 400/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDVNVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F+++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFEAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVKAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|229159446|ref|ZP_04287464.1| DNA ligase [Bacillus cereus R309803] gi|228624017|gb|EEK80825.1| DNA ligase [Bacillus cereus R309803] Length = 669 Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 396/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQENLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD++ L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDGLVKATEEELKAINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEIMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|229028145|ref|ZP_04184287.1| DNA ligase [Bacillus cereus AH1271] gi|228733163|gb|EEL84003.1| DNA ligase [Bacillus cereus AH1271] Length = 669 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A++ + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|206974389|ref|ZP_03235306.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97] gi|217957864|ref|YP_002336408.1| NAD-dependent DNA ligase LigA [Bacillus cereus AH187] gi|254781553|sp|B7HSW5|DNLJ_BACC7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781554|sp|B9J1L6|DNLJ_BACCQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206747629|gb|EDZ59019.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97] gi|217064176|gb|ACJ78426.1| DNA ligase, NAD-dependent [Bacillus cereus AH187] Length = 669 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/712 (35%), Positives = 400/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV+++ ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F+++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFEAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|229101110|ref|ZP_04231876.1| DNA ligase [Bacillus cereus Rock3-28] gi|228682238|gb|EEL36349.1| DNA ligase [Bacillus cereus Rock3-28] Length = 669 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/713 (35%), Positives = 398/713 (55%), Gaps = 58/713 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +EVRGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEVRGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 Y+ K F+ LN+E G +ANPRNAA+G +R+L+ T I R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLD-TKIAAKRNLSMFVYGLANVEE 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 231 KTISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDD 290 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 291 VALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIV 350 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 351 RRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEY 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG+ Sbjct: 400 RMPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGE 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F ++ IR AD++ L + Q + FG+ S TNL +I + Sbjct: 453 RVITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKEN 502 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SLER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ + Sbjct: 503 SLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKSINE----------IGEKM 552 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKKLVFTGTLQKIQ 662 AQ++V ++ N ++ + KE ++ +NV S K +V TG L+ + Sbjct: 553 AQSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEVMG 611 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 612 RSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|30260478|ref|NP_842855.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Ames] gi|49183320|ref|YP_026572.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Sterne] gi|50196911|ref|YP_052606.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. 'Ames Ancestor'] gi|65317730|ref|ZP_00390689.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Bacillus anthracis str. A2012] gi|165871348|ref|ZP_02215996.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488] gi|167634237|ref|ZP_02392559.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442] gi|167640082|ref|ZP_02398349.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193] gi|170688355|ref|ZP_02879564.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465] gi|170708762|ref|ZP_02899199.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389] gi|177653653|ref|ZP_02935792.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174] gi|190567340|ref|ZP_03020254.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I] gi|190567489|ref|ZP_03020402.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I] gi|196034623|ref|ZP_03102031.1| DNA ligase, NAD-dependent [Bacillus cereus W] gi|227812970|ref|YP_002812979.1| DNA ligase, NAD-dependent [Bacillus anthracis str. CDC 684] gi|228913034|ref|ZP_04076673.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925550|ref|ZP_04088639.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944102|ref|ZP_04106481.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229119952|ref|ZP_04249207.1| DNA ligase [Bacillus cereus 95/8201] gi|229604913|ref|YP_002864923.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248] gi|254686689|ref|ZP_05150547.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. CNEVA-9066] gi|254739086|ref|ZP_05196788.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Western North America USA6153] gi|254742292|ref|ZP_05199978.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Kruger B] gi|254756068|ref|ZP_05208097.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Vollum] gi|254761885|ref|ZP_05213734.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Australia 94] gi|81584374|sp|Q81ZG1|DNLJ_BACAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781547|sp|C3PBP1|DNLJ_BACAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781548|sp|C3L543|DNLJ_BACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|30253846|gb|AAP24341.1| DNA ligase (NAD(+)) [Bacillus anthracis str. Ames] gi|49177247|gb|AAT52623.1| DNA ligase, NAD-dependent [Bacillus anthracis str. Sterne] gi|50082973|gb|AAT70114.1| DNA ligase, NAD-dependent [Bacillus anthracis str. 'Ames Ancestor'] gi|164712832|gb|EDR18361.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488] gi|167511893|gb|EDR87272.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193] gi|167530551|gb|EDR93266.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442] gi|170126341|gb|EDS95231.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389] gi|170667687|gb|EDT18441.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465] gi|172081233|gb|EDT66308.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174] gi|190561276|gb|EDV15248.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I] gi|190561467|gb|EDV15438.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I] gi|195992666|gb|EDX56626.1| DNA ligase, NAD-dependent [Bacillus cereus W] gi|227002604|gb|ACP12347.1| DNA ligase (NAD(+)) [Bacillus anthracis str. CDC 684] gi|228663418|gb|EEL19003.1| DNA ligase [Bacillus cereus 95/8201] gi|228815491|gb|EEM61733.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834028|gb|EEM79576.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846439|gb|EEM91452.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269321|gb|ACQ50958.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248] Length = 669 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|184155951|ref|YP_001844291.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956] gi|254781353|sp|B2GDS9|DNLJ_LACF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183227295|dbj|BAG27811.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956] Length = 679 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/727 (34%), Positives = 407/727 (55%), Gaps = 67/727 (9%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ +QA+ EL+ L +++ YY+ P + D YD +R I FPDL Sbjct: 7 VSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQRFPDLVV- 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--- 125 P+ P ++GG L KVTH IP LS+ ++++ +L F R + DNS Sbjct: 66 --PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSLAELADFNRR-------QQDNSDVK 116 Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + LE KIDG +++ YE G+ V + RG+G GEDV+ ++ I +IP+VL P Sbjct: 117 VDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPE--PL 174 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242 +E RGE Y+ K F+ LN+ A G+ +ANPRNAA+G LR+L+P R L+ F++ Sbjct: 175 SLEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTFMYY 234 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + Q + L+KMR LGF VN R ++ + +Y E R LPY IDG+ Sbjct: 235 VPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTKKRDQLPYGIDGI 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KV++ + Q LG + PRW I++KF ++ +T + DI+ +GRTG +TP A ++PV Sbjct: 295 VEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMDPVQ 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ A+LHN DY+ +DIR+GD VL+ +AG++IP++ +I+ +R Sbjct: 355 LAGTTVSRASLHNPDYLV-----------EKDIRLGDTVLLHKAGDIIPEISRVIIEKRP 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D++P+ P+ CP C + +V L+ + A RC + C AQ E L HF SR+A N Sbjct: 404 ADSKPYEVPTTCPECGADLVH-LDDEV-----ALRCVNPM-CPAQIKEGLAHFASRNAMN 456 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLG + ++ + ++ AD++ L+ Q + K FG+ S++NL +I Sbjct: 457 IDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLTLPK------FGEKSISNLLTAI 506 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 R+ S ER +F LGIRHVGA++A+ LA + S ++ ++A D ++ V Sbjct: 507 ANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKS-------VDALMAA---DAATISAVD 556 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVFT 655 +G II A+ ++QN + + A LKEV +P+ E S+E K++V T Sbjct: 557 SIGPIIGDAVATYFQN-EQVHQLIAELKEVGVNMDYLAPTTSATE---SAEWAGKRVVLT 612 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G L K+ R +AQE+++ GA V+ +S+KTD++I G+ GSKLEKAQ LG+++ +E++F Sbjct: 613 GKLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFD 672 Query: 716 FLLQQYN 722 +++ N Sbjct: 673 QAMKEEN 679 >gi|121998657|ref|YP_001003444.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1] gi|166215780|sp|A1WY80|DNLJ_HALHL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|121590062|gb|ABM62642.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1] Length = 711 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/737 (34%), Positives = 393/737 (53%), Gaps = 72/737 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQA++ ++ L EIS HD YY +P I D+EYDAL R + A+PDL S+ P Sbjct: 9 EQAQQRMAQLRGEISEHDYHYYVLDRPTISDAEYDALFRELQRLEAAYPDLVSSDSPT-- 66 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++ G V H P LSL+ + +DL F RI + S+ +T EPK+ Sbjct: 67 -QRVAGTAQEGFEAVVHDTPMLSLDNAFEADDLVDFDRRIR---DRLGVASVVYTGEPKL 122 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG +++ Y+ G+ V A RGDGH+GEDV+A +R + ++P R+ P +EVRGEV I Sbjct: 123 DGISLSLTYQDGELVRAGTRGDGHTGEDVTANVRTLRSVPLRLRGDGYPGRLEVRGEVVI 182 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAK 252 K DF LN + G +P+ANPRNAA+G LR+L+P R L F G+G + + Sbjct: 183 RKEDFERLNQARLDAGERPFANPRNAAAGSLRQLDPRITARRPLTLFTFGVGDPLALGVE 242 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 +++L+ + GF + +Y + + R LP++IDG V+KVD+ +++ Sbjct: 243 SHWQVLECLAGWGFRTTAPLEHLEGVSACQAYRDRLIEERDALPFEIDGAVFKVDDLAVR 302 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG AR+PRW ++ K ++A+T + I +GRTG +TP+ARL+PV + G + A+ Sbjct: 303 EQLGFTARAPRWALAFKLPAREATTVVEAIVPSVGRTGKITPLARLQPVEVSGVTVARAS 362 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D + +D +R GD V+V+RAG+VIP++ D+++ +R AQP+ F Sbjct: 363 LHNADELARMD-----------VREGDTVMVRRAGDVIPQITDVVLAKRPEGAQPWRFEE 411 Query: 433 ---FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 CP C S V R G+ AAHRC GGL C AQ+ + HF SR A +I+GLG++ Sbjct: 412 RVQACPECGSAVQR----IEGE--AAHRCVGGLYCPAQREGAILHFASRRALDIDGLGEK 465 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + + AD+F L Q ++ GD S NL ++++ R+ + Sbjct: 466 IVEQLVAK---GLVVDL-ADLFRLGHAQLAGLERM------GDKSADNLLAALDRARSTT 515 Query: 550 LERFIFSLGIRHVGAEIARSLAK--YYL--------------------SYQNFAQEINNI 587 L RF+++LGI HVG AR LA+ Y L ++ + + Sbjct: 516 LARFLYALGIPHVGEVTARRLAEAAYGLMVAVPRGDRAALRAAAGLDAQTAITSEALLRV 575 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN------ICAVEALLKEVSPSIGRHEK 641 +A DD L + VG ++A+AI F+ P N +CA E P + Sbjct: 576 MAAPADD---LEAIEDVGPVVARAIAGFFAEPHNRQVVDHLCAAGVHWPEPDPP--EQAE 630 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 +VSS + + V TGTL+ + R +A+ + G V+ +SRKTD ++ G + GSKL KA Sbjct: 631 SVSS-LAGRAFVVTGTLETMTRDEAKAAIEACGGRVTGSVSRKTDYLVAGADAGSKLNKA 689 Query: 702 QQLGVKIMNEEQFLFLL 718 ++LGV+++NE LL Sbjct: 690 RELGVEVVNESGLRELL 706 >gi|324324305|gb|ADY19565.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 669 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/712 (35%), Positives = 399/712 (56%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E +K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F+++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFEAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|260662792|ref|ZP_05863686.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN] gi|260552873|gb|EEX25872.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN] Length = 679 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/727 (34%), Positives = 406/727 (55%), Gaps = 67/727 (9%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ +QA+ EL+ L +++ YY+ P + D YD +R I FPDL Sbjct: 7 VSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQRFPDLVV- 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--- 125 P+ P ++GG L KVTH IP LS+ +++ +L F R + DNS Sbjct: 66 --PDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSPAELADFNRR-------QQDNSDVK 116 Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + LE KIDG +++ YE G+ V + RG+G GEDV+ ++ I +IP+VL P Sbjct: 117 VDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPE--PL 174 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242 +E RGE Y+ K F+ LN+ A G+ +ANPRNAA+G LR+L+P R L+ F++ Sbjct: 175 SLEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTFMYY 234 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + Q + L+KMR LGF VN R ++ + +Y E R LPY IDG+ Sbjct: 235 VPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGIDGI 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KV++ + Q LG + PRW I++KF ++ +T + DI+ +GRTG +TP A ++PV Sbjct: 295 VEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMDPVQ 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ A+LHN DY+ +DIR+GD VL+ +AG++IP++ +I+ +R Sbjct: 355 LAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIEKRP 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D++P+ P+ CP C + +V L+ + A RC + C AQ E L HF SR+A N Sbjct: 404 ADSKPYEVPTTCPECGADLVH-LDDEV-----ALRCVNPM-CPAQIKEGLAHFASRNAMN 456 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLG + ++ + ++ AD++ L+ Q + K FG+ S++NL +I Sbjct: 457 IDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLTLPK------FGEKSISNLLTAI 506 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 R+ S ER +F LGIRHVGA++A+ LA + S ++ ++A D ++ V Sbjct: 507 ANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKS-------VDALMAA---DAATISAVD 556 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVFT 655 +G II A+ ++QN + + A LKEV +P+ E S+E K++V T Sbjct: 557 SIGPIIGDAVATYFQN-EQVHQLIAELKEVGVNMDYLAPTTSATE---SAEWAGKRVVLT 612 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G L K+ R +AQE+++ GA V+ +S+KTD++I G+ GSKLEKAQ LG+++ +E++F Sbjct: 613 GKLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFD 672 Query: 716 FLLQQYN 722 +++ N Sbjct: 673 QAMKEEN 679 >gi|229055132|ref|ZP_04195560.1| DNA ligase [Bacillus cereus AH603] gi|228721208|gb|EEL72737.1| DNA ligase [Bacillus cereus AH603] Length = 669 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 397/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E +K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEITKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R++ Q DD ++ + Sbjct: 59 -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVH---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPYRRTCETIEDVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++Q+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 AIQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLELER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKTINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|74316642|ref|YP_314382.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259] gi|123745545|sp|Q3SL40|DNLJ_THIDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|74056137|gb|AAZ96577.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259] Length = 686 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/715 (36%), Positives = 392/715 (54%), Gaps = 74/715 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QAR ++L +EI H+ YY P I D+EYD L +A+ A P+L ++ P Sbjct: 7 QARA--AALRREIERHNYAYYVLDAPTIPDAEYDRLYHELEALEAAHPELVAADSPT--- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEP 132 ++GG+ V H++P LS+ E R F R+ + D + + E Sbjct: 62 RRVGGQPLAGFKPVRHAVPMLSIRTETDTTAAGARAFDVRVRKELGLAPADPPVEYAAEL 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K DG I +RYE G V AA RGDG +GEDV+ +R + TIP R+ P ++EVRGEV Sbjct: 122 KFDGLAINLRYEAGVLVAAATRGDGETGEDVTQNVRTVRTIPLRLHGDAPPAVLEVRGEV 181 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI- 249 ++ ++DF N + A G+ NPRN A+G +R+L+P R L+F+ +GLG+ Sbjct: 182 FMRRDDFERYNAQQRAAGKPTLVNPRNGAAGSIRQLDPAIAGQRPLSFYAYGLGEVVGWP 241 Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 L ++ LG PV+ N ++++++++ + R LP+DIDG+VYKV+ Sbjct: 242 DAPATHGATLDALQGLGVPVSAERCVCNGVDDLIAFHDDIAARRDQLPFDIDGVVYKVNA 301 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ++LG R PRW ++HK+ ++ T +L I + +GRTG LTPVARL PV +GG + Sbjct: 302 FALQRELGFLTREPRWAVAHKYPAQEQLTTVLGIGVHVGRTGALTPVARLAPVFVGGVTV 361 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNATLHN+D I +D RVGD V+V+RAG+VIP++V ++ ER P +P Sbjct: 362 TNATLHNQDEID-----------RKDTRVGDTVIVRRAGDVIPEIVATVL-ERRPQPEPP 409 Query: 429 ------SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 S+P CP C S VVR G+ VA RCTGGL C AQ+ + L HF SR A + Sbjct: 410 RFNILQSYP-VCPECGSHVVR----LEGEAVA--RCTGGLYCPAQRKQALLHFASRRAMD 462 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLY 539 I+G+G++ +D E +R PAD++ L +E + G + S NL Sbjct: 463 IDGVGEKLVDQLVSRE----LVRTPADLYRL---------PLETLAGLERMAEKSARNLI 509 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I ++ +L RFI++LGIR+VG AR LA+++ + ++ ++ N +L+ Sbjct: 510 QAIETSKSTTLARFIYALGIRNVGETTARDLARHFGA-------LDALLGANE---TALL 559 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLV 653 V VG I+AQ+I +F+ P N+ V L ++G H + + K LV Sbjct: 560 GVRDVGPIVAQSIAQFFAEPHNLEVVGKLR-----ALGVHWPETTGMQQSGGILSGKTLV 614 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 TGTL + R +A+E + G V+ +S+KTD ++ G+ GSKL KA++LGV I Sbjct: 615 LTGTLPALTRDQAKERIESAGGKVAGSVSKKTDYVVAGEEAGSKLAKARELGVTI 669 >gi|196040110|ref|ZP_03107412.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99] gi|196028965|gb|EDX67570.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99] Length = 669 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|90962320|ref|YP_536236.1| NAD-dependent DNA ligase [Lactobacillus salivarius UCC118] gi|123391334|sp|Q1WSH6|DNLJ_LACS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|90821514|gb|ABE00153.1| NAD-dependent DNA ligase [Lactobacillus salivarius UCC118] Length = 672 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/714 (35%), Positives = 403/714 (56%), Gaps = 65/714 (9%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L +++ + YY P + DS YD +R + A PDL ++ P+ ++G Sbjct: 9 ELKELRNKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSPS---QRVG 65 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G++ KV+H IP LSL +++ E+L +F+ R+ ++K D ++ E KIDG I Sbjct: 66 GKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLERLENSVEQKLD----YSCELKIDGLAI 121 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ YE GKF+ + RG+G GED++ ++ I IP + LN P IEVRGE Y+ K F+ Sbjct: 122 SLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIP--MELNEPVSIEVRGECYMPKKSFV 179 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM 257 LN + A G+ +ANPRNAA+G LR+L+ T IT R L+ F++ L + ++ K Q E Sbjct: 180 ELNTKREAEGQAVFANPRNAAAGSLRQLD-TKITASRNLSTFIYYLMEPEKLGIKTQTEA 238 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ GF VNN +Q T I +Y ++ R+ LPYDIDG+V K + F++Q Q+G Sbjct: 239 LNKLESWGFKVNNESKQVKTKEEIFAYIDKATDQRANLPYDIDGIVLKAESFAVQSQVGN 298 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + PRW I++KF + T++LDI+ +GRTG++TP A +EPV + G + A+LHN D Sbjct: 299 TVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVARASLHNPD 358 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 Y+K +DIR+GD V + +AG++IP++ ++++ +R D+ + P+ CP C Sbjct: 359 YLK-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRTEDSVEYQIPTECPEC 407 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +++V L+ + A RC C A E L HF SR+A +I GLG + ++ + Sbjct: 408 GAKLVH-LDDE-----VALRCINP-QCPALVKESLTHFASRNAMDIRGLGPRIIEQLYNR 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E I+ A I++L Q + K F + S NL +I+ RN S+ER IF L Sbjct: 461 E----MIKDVAGIYSLTFEQLITLDK------FKEKSANNLLTAIDNSRNNSIERLIFGL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA++AR LA+ Y S N A+ ++ I+ + +G II ++ ++ Sbjct: 511 GIRHVGAKVARILAENYKSMDNLAKAKSDEIS----------TIDSLGKIIGDSVEMYFA 560 Query: 618 NPRNICAVEALLKEVSPS------IGRH-----EKNVSSEIENKKLVFTGTLQKIQRHKA 666 + V LL E+ + +G+ E + S ++V TGTL ++R +A Sbjct: 561 DEH----VMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKRSEA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + ++ GA V+ +S+KTD++I G + GSKL KAQ+L V++MNE +F+ +++ Sbjct: 617 KSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEE 670 >gi|222110866|ref|YP_002553130.1| NAD-dependent DNA ligase [Acidovorax ebreus TPSY] gi|254781316|sp|B9MIW4|DNLJ_DIAST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221730310|gb|ACM33130.1| DNA ligase, NAD-dependent [Acidovorax ebreus TPSY] Length = 740 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/742 (34%), Positives = 395/742 (53%), Gaps = 83/742 (11%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ +L ++++ YY P + D+EYD + A+ A+PDL P+ P ++ Sbjct: 31 KIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQELQALEGAYPDLV---TPDSPTQRVL 87 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQ-KKDDNSIFFTLEPKIDG 136 G + L V H +P LS+ + E + F R+ R + D + + EPK DG Sbjct: 88 GAVLDGLTPVRHRVPMLSIRTETDTEASGAQAFDARVRRELKLPPDAPPVEYVAEPKFDG 147 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +++RYE G+ V AA RGDG GEDV+ +R I IP L +P ++EVRGEVY+ + Sbjct: 148 LAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRTIRQIPLSLPAGVPRVLEVRGEVYMRRA 207 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG- 253 DF ALN+ G K + NPRNAA+G +R+L+ + IT R L+FF +GLG+ + G Sbjct: 208 DFDALNERQREKGDKTFVNPRNAAAGAVRQLD-SGITAQRPLSFFAYGLGEVTPAAEGGP 266 Query: 254 ----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + MLQ+++ GFPV V+ A +++++ + + R LPYDIDG+VYKV+ Sbjct: 267 DFGTHFGMLQQLKEWGFPVAAQVQIAQGASELIAFHQRVGAERDALPYDIDGVVYKVNSL 326 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG R PRW ++HK+ ++ TR+ ID+Q+GRTG LTPVARL PV +GG +T Sbjct: 327 ALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPVFVGGVTVT 386 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII------------ 417 NATLHN ++ + +RVGD+V+V+RAG+VIP+VV ++ Sbjct: 387 NATLHNLFELRR-----------KKVRVGDQVIVRRAGDVIPEVVGVVPAGAGLAVLAGS 435 Query: 418 -------------------VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458 R P F P CPIC S VVR+ G++ HRC Sbjct: 436 DALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVRE----PGEV--NHRC 489 Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518 +GGL C AQ+ + + HF R A +IEGLG++ +D + IR D++ L Sbjct: 490 SGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVEGH----VIRTLPDLYRL----- 540 Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578 + + + + S N+ D+++K + +L RF+F LGIRHVG A+ LA+++ Sbjct: 541 -GLSSLAQLDRMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHF---- 595 Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIG 637 + A + L++V VG ++A+AI F+ P N VE L V+ Sbjct: 596 ------GRLDAIMDAGVEQLLQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWDES 649 Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697 + + +V TGTL + R A++ + GA V+ +S+KT ++ G + GSK Sbjct: 650 EPAAAATLPLAGMTVVLTGTLPTLGRDAAKDLLESAGAKVAGSVSKKTHYVVAGADAGSK 709 Query: 698 LEKAQQLGVKIMNEEQFLFLLQ 719 L KAQ+LG+ +++E+ LL+ Sbjct: 710 LAKAQELGIPVLDEDGLRALLR 731 >gi|147669216|ref|YP_001214034.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1] gi|190359250|sp|A5FRL4|DNLJ_DEHSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146270164|gb|ABQ17156.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1] Length = 680 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 253/717 (35%), Positives = 391/717 (54%), Gaps = 63/717 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ +L +EI+ H+ YY P I D++YD L RR + A P+L P+ P ++G Sbjct: 10 EVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELV---TPDSPTQRVG 66 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL--EPKIDGT 137 E + V H P LSL ++ +L + R+ KK +I F + EPK+DG Sbjct: 67 AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRV-----KKLLGNIPFQIDCEPKMDGL 121 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + Y GKF A RGDG GE+++ +R I +IP N P + EVRGEVY+SKN Sbjct: 122 AVALTYRNGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNG 181 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQY 255 F LN E G +ANPRNAA+G LR+L+P+ R L+ F++ LG + + + + Sbjct: 182 FAKLNRERADKGLPLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHW 241 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L +GF +N R NT YY +M + R++LPY+ DG+V+KVD SLQ +L Sbjct: 242 QILDYFSKIGFRINPLNRLVNTLEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHRL 301 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G+ R PRW I++KF +Q TRL I I +GRTG L P A LEPVN+GG ++ A LHN Sbjct: 302 GDVGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHN 361 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF----- 430 ED ++R +DIR GD V+++RAGEVIP+VV ++++R+P+++PF Sbjct: 362 ED---------DILR--KDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLF 410 Query: 431 -PSF----CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ CP+C + R G+ A H C ++C AQ +L+HFVSR A +I G Sbjct: 411 NPNLNRTACPVCGGEIYR----PAGE--AMHYC-ANVSCPAQFERQLEHFVSRGAMDIRG 463 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + L + ++ +D++ L +T + + G+ S N+ D+I Sbjct: 464 IG-ESLSVILAQQGLVKNV---SDLYYL------TTADLLQLPRMGEKSADNIIDAIADS 513 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L+R IF LG+RHVG E A L+++Y NI A L +P +G Sbjct: 514 KTRPLDRVIFGLGVRHVGNETATLLSRHY----------GNIWALAKTGLGELQTIPDIG 563 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--ENKKLVFTGTLQKIQR 663 D IA +IV ++ +N+ + L+E + +K V+ + + V TG L+ R Sbjct: 564 DKIASSIVAYFSEEKNVAVIRR-LEEAGVRLTSDQKPVNKNMPFSGMEFVVTGKLESFSR 622 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +AQE + LG +++ T+ ++VG + GSKL KA+ +GVK ++E +F+ +L+Q Sbjct: 623 EEAQEKIRSLGGTAKDNVTKATNYLVVGADAGSKLTKARSMGVKELSEREFINMLEQ 679 >gi|218901495|ref|YP_002449329.1| DNA ligase, NAD-dependent [Bacillus cereus AH820] gi|254781549|sp|B7JM96|DNLJ_BACC0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218535434|gb|ACK87832.1| DNA ligase, NAD-dependent [Bacillus cereus AH820] Length = 669 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDYLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+V+++I ++R + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVINVIFDKRTGGEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|15613212|ref|NP_241515.1| NAD-dependent DNA ligase LigA [Bacillus halodurans C-125] gi|15213980|sp|Q9KF37|DNLJ_BACHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|10173263|dbj|BAB04368.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+)) [Bacillus halodurans C-125] Length = 669 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 391/713 (54%), Gaps = 69/713 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE+ R +L +E YH YY KP++ D+EYD L + AFP+L P+ Sbjct: 10 IEKLRNQL----EEYGYH---YYVLDKPLVSDAEYDGLMNELIELEEAFPELKSDTSPS- 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GG KV H P LSL ++ +DLR F R+ + + + ++ E K Sbjct: 62 --VRVGGPPLPHFEKVEHRTPMLSLGNAFSDQDLRDFDRRVRQVV----GDEVTYSCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I++ YE G+FV A RGDG +GED++ +R IP+IP L L +EVRGE ++ Sbjct: 116 IDGLAISLIYESGRFVRGATRGDGTTGEDITQNLRTIPSIP--LRLKEAVSLEVRGEAFM 173 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 K F ALN+ A G + +ANPRNAA+G LR+L+P R+L+ F++ +G Sbjct: 174 PKRSFEALNEAKEAAGEERFANPRNAAAGSLRQLDPKLAAKRHLDAFIYAIGSVEGKELH 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 +E L ++ +GF +N + ++ Y N R+ LPY+IDG+V KVD + Q Sbjct: 234 SHHEGLNYLKTIGFKINPESAYCESIDEVIDYVNSWLERRADLPYEIDGIVIKVDNVNFQ 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG A+SPRW I++KF ++ T LLDI + +GRTG++TP A L+PV + G + A+ Sbjct: 294 EQLGYTAKSPRWAIAYKFPAEEVITTLLDITLNVGRTGVVTPTAELKPVTVAGTTVKRAS 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I+ +DIR+GD V+VK+AG++IP+VV+++ R + +PFS P+ Sbjct: 354 LHNEDLIR-----------EKDIRLGDSVVVKKAGDIIPEVVNVLTELRTGEERPFSMPT 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S +VR G++ A RC C AQ E L HFVSR A NI+GLG++ + Sbjct: 403 HCPECGSELVR----LEGEV--ALRCINP-QCPAQIREGLIHFVSRQAMNIDGLGEKVIT 455 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F+ I AD++ L + + ++ G+ SV NL SI + SLER Sbjct: 456 QLFEH----GLIHNVADLYKLNKDELLQLERM------GEKSVNNLLASIETSKKSSLER 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIR VG++ A++LA ++ + + + LI V +G+ +A +I Sbjct: 506 LLFGLGIRFVGSKAAKTLAMHFPTMTELRRA----------SYDELIAVNEIGEKMAASI 555 Query: 613 VEFYQNPRNICAVEALLKEVS----------PSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 V +++ P V L+ E++ P E+ S K +V TG LQ + Sbjct: 556 VSYFEKPE----VNELIDELASLGVNMTYNGPKPIGEEEIADSPFAGKTVVLTGKLQALT 611 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+ TD+++ G++ GSKL KA++L ++I +EE + Sbjct: 612 RGEAKEKIEALGGKVTGSVSKNTDLLVAGEDAGSKLTKAKELNIEIWDEEALV 664 >gi|121594439|ref|YP_986335.1| DNA ligase [Acidovorax sp. JS42] gi|166215384|sp|A1W7N4|DNLJ_ACISJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120606519|gb|ABM42259.1| DNA ligase, NAD-dependent [Acidovorax sp. JS42] Length = 731 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/742 (34%), Positives = 398/742 (53%), Gaps = 83/742 (11%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ +L ++++ YY P + D+EYD ++ A+ A+PDL P+ P ++ Sbjct: 22 KIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQQLQALEGAYPDLV---TPDSPTQRVL 78 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQ-KKDDNSIFFTLEPKIDG 136 G + L V H +P LS+ + E + F R+ R + D + + EPK DG Sbjct: 79 GAVLDGLTPVRHRVPMLSIRTETDTEASGAQAFDARVRRELKLPPDAPPVEYVAEPKFDG 138 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +++RYE G+ V AA RGDG GEDV+ +R I IP L +P ++EVRGEVY+ + Sbjct: 139 LAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRTIRQIPLSLPAGVPPVLEVRGEVYMRRA 198 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG- 253 DF ALN+ G K + NPRNAA+G +R+L+ + IT R L+FF +GLG+ + G Sbjct: 199 DFDALNERQREKGDKTFVNPRNAAAGAVRQLD-SGITAQRPLSFFAYGLGEVTPAAEGGP 257 Query: 254 ----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + MLQ+++ GFPV V+ A +++++ + + R LPYDIDG+VYKV+ Sbjct: 258 DFGTHFGMLQQLKEWGFPVAAQVQIAQGASELIAFHQRVGAERDALPYDIDGVVYKVNSL 317 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG R PRW ++HK+ ++ TR+ ID+Q+GRTG LTPVARL PV +GG +T Sbjct: 318 ALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKLTPVARLAPVFVGGVTVT 377 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII------------ 417 NATLHN ++ + +RVGD+V+V+RAG+VIP+VV ++ Sbjct: 378 NATLHNLFELRR-----------KKVRVGDQVIVRRAGDVIPEVVGVVPAGAGLAVLAGS 426 Query: 418 -------------------VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458 R P F P CPIC S VVR+ G++ HRC Sbjct: 427 DALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVRE----PGEV--NHRC 480 Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518 +GGL C AQ+ + + HF R A +IEGLG++ +D IR D++ L Sbjct: 481 SGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVDGH----VIRTLPDLYRL----- 531 Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578 + + + + S N+ D+++K + +L RF+F LGIRHVG A+ LA+++ Sbjct: 532 -GLSSLAQLDRMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHF---- 586 Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIG 637 +++ I+ + L++V VG ++A+AI F+ P N VE L V+ Sbjct: 587 ---GQLDAIMDAGVE---QLLQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWDES 640 Query: 638 RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697 + + +V TGTL + R A++ + GA V+ +S+KT ++ G + GSK Sbjct: 641 EPAAAATLPLAGMTVVLTGTLPTLGRDAAKDLLESAGAKVAGSVSKKTHYVVAGADAGSK 700 Query: 698 LEKAQQLGVKIMNEEQFLFLLQ 719 L KAQ+LG+ +++E+ LL+ Sbjct: 701 LAKAQELGIPVLDEDGLHALLR 722 >gi|293376177|ref|ZP_06622422.1| DNA ligase (NAD(+)) [Turicibacter sanguinis PC909] gi|292645164|gb|EFF63229.1| DNA ligase (NAD(+)) [Turicibacter sanguinis PC909] Length = 669 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 260/718 (36%), Positives = 386/718 (53%), Gaps = 62/718 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E L IE+ K L+ E YY KP + D EYD L + + P+L + Sbjct: 8 MEKLRIEELTKLLTQYNHE-------YYVLDKPSVSDREYDRLMQELMELEEKHPELKSN 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P ++GG++ K+ H P LSL +N DLR F TR+ + K + Sbjct: 61 ---TSPTVRVGGKVLEGFNKIEHEKPMLSLSNAFNEGDLRDFDTRVKKVSPKAT-----Y 112 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E KIDG +T+ Y G FV A RGDG GED+S ++ I TIP ++ N P +EVR Sbjct: 113 VCELKIDGLAVTLHYNNGAFVKGATRGDGVIGEDISENLKTIKTIPLHINNNQP--LEVR 170 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY+SK LN+E A G + +ANPRNAA+G LR+L+ R L F + + + Sbjct: 171 GEVYMSKATLEKLNEERAAKGEELFANPRNAAAGSLRQLDSRIAAKRNLAMFCYAVPSAA 230 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ E LQK+ LGF VN + ++ Y N + R LPY+IDG+V KV+ Sbjct: 231 DLGCTTHEESLQKISELGFNVNPNRQVCENIDEVLEYINRWTNARFDLPYEIDGIVIKVN 290 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q +LG +SPRW I++KF ++ T L DI +GRTG++TP A LEPV + G Sbjct: 291 QLQEQDKLGNTVKSPRWAIAYKFPAEEVETILTDIIFTVGRTGMVTPNAVLEPVRVAGTR 350 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNEDY+ RDIR+ DRV++++AGE+IP+VV +++ R+ D P Sbjct: 351 VSRATLHNEDYVT-----------SRDIRINDRVIIRKAGEIIPEVVKPVIDARNGDEIP 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F S CP C S +VR+ A + C + C A+ +E L HFVSRDA NI+GLG Sbjct: 400 FEMISTCPRCSSELVREAGE------ADYYCL-NIDCPARIVESLSHFVSRDAMNIDGLG 452 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ F+ + I ADI+ L + Q ++ GD TNL ++I + Sbjct: 453 IKVVEQLFEHK----LIENVADIYRLTKEQLLPLERM------GDKKATNLLNAIEASKE 502 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SLE+ +F LGIRHVG++ A+ LA + + +++++ DD+ V VGD+ Sbjct: 503 NSLEKLLFGLGIRHVGSKTAKVLATQF-------ENMDSLMDAKFDDFKV---VAEVGDV 552 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENKKLVFTGTLQKIQ 662 IA +IV ++ N+ ++ LKE+ ++ + N K +V TGTL+ + Sbjct: 553 IANSIVHYFSQTANVELIDQ-LKELGLNMSYKGARLADANTEHVFFGKTVVLTGTLETLS 611 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R +A + LGA VS +S TD +I G GSKL KAQQLGV +++E FL ++ + Sbjct: 612 RKEAGIKLESLGAKVSGSISSNTDYLIAGAKSGSKLTKAQQLGVTVLDEATFLSMMNE 669 >gi|229107967|ref|ZP_04237594.1| DNA ligase [Bacillus cereus Rock1-15] gi|228675470|gb|EEL30687.1| DNA ligase [Bacillus cereus Rock1-15] Length = 669 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 395/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q D ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+LNP R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLNPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD++ L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|296330120|ref|ZP_06872602.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673365|ref|YP_003865037.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str. W23] gi|296152709|gb|EFG93576.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411609|gb|ADM36728.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str. W23] Length = 668 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 248/712 (34%), Positives = 404/712 (56%), Gaps = 53/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A++ L + I+ + YY +P + D+EYD L + AI PDL P+ P Sbjct: 4 ETAKQRADELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDL---RTPDSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + + KVTH P LSL +N +DLR F R+ + + + + +E KI Sbjct: 61 TQRVGGAVLEAFQKVTHGTPMLSLGNAFNDDDLRDFDRRVRQAV----GDDVAYNVELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I IP + ++ IEVRGE Y+ Sbjct: 117 DGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRDLS--IEVRGEAYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F LN+E I +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ + Sbjct: 175 KRSFETLNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + L + +GF N ++ + +++ +E ++ R+ LPY+IDG+V KVD Q+ Sbjct: 235 QSQGLDFLDEIGFKTNQERKKCGSIEEVIALIDEFQAKRADLPYEIDGIVIKVDSLDQQE 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+L Sbjct: 295 ELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED IK +DIR+ D+V+VK+AG++IP+VV+++V +R + + FS P+ Sbjct: 355 HNEDLIK-----------EKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSMPTE 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 404 CPECGSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ +R AD++ L + Q ++ G+ S NL SI K + SLER Sbjct: 457 LFEEN----LVRNVADLYKLTKEQVIQLERM------GEKSTENLISSIQKSKENSLERL 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR +G++ A++LA ++ S +N + L+ + +G+ +A A++ Sbjct: 507 LFGLGIRFIGSKAAKTLAMHFESLENLKKASKE----------ELLAIDEIGEKMADAVI 556 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668 ++ + + L + + + K V +E K +V TG L+++ R+ A+ Sbjct: 557 TYFHKEEMLDLLNELQELGVNTHYKGPKKVKAEESDSYFAGKTIVLTGKLEELSRNDAKA 616 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LG ++ +S+ TD++I G+ GSKL KAQ+L +++ NEEQ + L++ Sbjct: 617 QIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK 668 >gi|270262950|ref|ZP_06191221.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13] gi|270043634|gb|EFA16727.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13] Length = 673 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 245/717 (34%), Positives = 408/717 (56%), Gaps = 58/717 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P + D+EYD L + +A P+L ++ P Sbjct: 1 MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMNELRELENAHPELITADSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H +P LSL+ +++ E F R+ + K + F E K Sbjct: 60 --QRVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQD--RLKSSEPLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE++++ +R I IP R+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLSGDNIPRRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N+E K +ANPRNAA+G +R+L+P R L FF +G+G + E+ Sbjct: 176 MPQAGFEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + ++ L + + G PV++ + ++++Y +++ R+ L +DIDG+V K+D+ Sbjct: 236 -PRSHWQRLMQFKNWGLPVSDRAKCCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDDI 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+ LG AR+PRW + KF ++ T + +++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 295 DLQETLGFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVQVAGVIVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD V+V+RAG+VIPKVV +I + R DA+ Sbjct: 355 NATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPKVVGVIEDRRPQDAREIV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP+C S V R G+ V RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPLHCPVCGSDVER----VEGEAVT--RCTGGLICAAQRKEALKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + E ++ PAD+F L S + + G S NL +++ K + + Sbjct: 458 IIEQLVEKE----YVKNPADLFRL------SAGILTGLDRMGPKSAQNLVNALEKSKRTT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A +LA ++ E+ + A + D +L +VP VG+++A Sbjct: 508 FARFLYALGIREVGEATAANLAAHF-------GELPKLYAADID---ALKQVPDVGEVVA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH--------EKNVSSEIENKKLVFTGTLQKI 661 + + F N ++ L + IG + + + S K +V TG+L ++ Sbjct: 558 KHVRHFLDEELNQKVIDEL---IGAEIGINWPEVVVVAAEEIDSPFAGKTVVLTGSLSQL 614 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 615 SRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEAEMIRLL 671 >gi|134094553|ref|YP_001099628.1| DNA ligase [Herminiimonas arsenicoxydans] gi|166215813|sp|A4G4R4|DNLJ_HERAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|133738456|emb|CAL61501.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Herminiimonas arsenicoxydans] Length = 696 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/702 (36%), Positives = 384/702 (54%), Gaps = 52/702 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E++ H+ YY PI+ D+EYD L R A+ + P+L + P ++G Sbjct: 34 LRSELNRHNYAYYVLDNPIVPDAEYDQLFRELQALEASHPELLVFDSPT---QRVGALAL 90 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 + VTHS+P LSL + ED+ F R+ +++ + + E K DG I +RY Sbjct: 91 TAFPPVTHSVPMLSLGNGFEDEDVLAFDKRVSEGLNSREE--VEYATELKFDGLAINLRY 148 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALN 202 E G V AA RGDG +GE+V+A IR + IP R+ + N P++++VRGEV + K D LN Sbjct: 149 EDGVLVQAATRGDGATGENVTANIRTVRAIPLRLHTNNPPKVLDVRGEVMMYKADLAKLN 208 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKGQYEML 258 G K +ANPRNAA+G LR+L+ + IT R L FF +G+G + +++ A +L Sbjct: 209 ARQRDAGAKEFANPRNAAAGSLRQLD-SRITAQRSLRFFSYGIGLLEGADMPAS-HSALL 266 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 LG PV + G++ +Y R LPY+IDG+VYKV+ Q QLG Sbjct: 267 DWYAELGIPVCSERAVVRGVQGLLEFYKATSEKRPQLPYEIDGVVYKVNRVDQQLQLGFV 326 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +R+PR+ I+HKF ++A T + DI++Q+GRTG +TPVARL PV +GG +TNATLHNED Sbjct: 327 SRAPRFAIAHKFPAEEALTTVQDIEVQVGRTGAITPVARLAPVLVGGVTVTNATLHNEDE 386 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 ++ +DI++GD V+V+RAG+VIP+VV + R A+PF PS CP+C Sbjct: 387 VR-----------RKDIQIGDTVIVRRAGDVIPEVVAFVPERRPASARPFIMPSSCPVCG 435 Query: 439 SRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +VR + A RC+GG + C+AQ+ L HFVSR A ++EGLG Q ++ Sbjct: 436 SPIVRLEDE------AIARCSGGWVKCAAQRKGGLLHFVSRRAMDVEGLGDQLVEQLVDK 489 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I AD++ L R ++ D S N+ D++ K + +L RFI++L Sbjct: 490 H----IITTAADLYKLGFRALAELDRM------ADKSAQNVLDALEKSKRTTLARFIYAL 539 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG A+ LA+++ N+ A L+ V +G ++A +I F+ Sbjct: 540 GIRHVGEATAKELARHF----------GNLDALLQASPEQLLEVADIGPVVAASITAFFT 589 Query: 618 NPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + NI +E L+ + H +N + K V TGTL + R A E + G Sbjct: 590 DAMNIELIEQ-LRAAGVTWPEHVVENRPRPLAGKTFVLTGTLPTLSRDAAAEKIEAAGGK 648 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V+ +S+KT ++ G GSKL KA++LGV I++E L LL Sbjct: 649 VAGSVSKKTSYVVAGAEAGSKLAKAEELGVTILDETGLLQLL 690 >gi|229095009|ref|ZP_04226005.1| DNA ligase [Bacillus cereus Rock3-29] gi|229113962|ref|ZP_04243388.1| DNA ligase [Bacillus cereus Rock1-3] gi|228669421|gb|EEL24837.1| DNA ligase [Bacillus cereus Rock1-3] gi|228688339|gb|EEL42221.1| DNA ligase [Bacillus cereus Rock3-29] Length = 669 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/713 (35%), Positives = 397/713 (55%), Gaps = 58/713 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 Y+ K F+ LN+E G +ANPRNAA+G +R+L+ T I R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLD-TKIAAKRNLSMFVYGLANVEE 230 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 231 KTISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDD 290 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 291 VALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIV 350 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 351 RRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEY 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG+ Sbjct: 400 RMPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGE 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F ++ IR AD++ L + Q + FG+ S TNL +I + Sbjct: 453 RVITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKEN 502 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SLER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ + Sbjct: 503 SLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKSINE----------IGEKM 552 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI------GRHEKNVSSEIENKKLVFTGTLQKIQ 662 AQ++V ++ N ++ + KE ++ +NV S K +V TG L+ + Sbjct: 553 AQSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKSADLQNVESYFAGKTVVLTGKLEVMG 611 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 612 RSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|149183793|ref|ZP_01862194.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1] gi|148848496|gb|EDL62745.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1] Length = 668 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/715 (35%), Positives = 394/715 (55%), Gaps = 68/715 (9%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S EQ EL +L + +Y Y+ KP + D+EYD + AI FP+L P+ Sbjct: 5 SAEQKVAELHNLLNQYNYE---YHVLDKPSVPDAEYDRVMNELIAIETEFPEL---RTPD 58 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG + KV H P LSL +N +DLR F ++ ++ + + E Sbjct: 59 SPTQRVGGNTLEAFEKVEHRTPMLSLGNAFNEDDLRDFDRKV----RQAAGEAYSYVCEL 114 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGE 190 KIDG +++RYE G F A RGDG GED++A ++ I +IP L IPE +EVRGE Sbjct: 115 KIDGLAVSLRYEDGLFSQGATRGDGTIGEDITANLKTIKSIP----LRIPEPLTMEVRGE 170 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249 ++ K F ALN +P+ANPRNAA+G LR+L+P +R L+ +++ + E Sbjct: 171 AFMPKRSFEALNKAKEEKEEEPFANPRNAAAGSLRQLDPRIAASRNLDIYLYSIADVGET 230 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N ++ + ++ Y R LPYDIDG+V KVD Sbjct: 231 GVVSHSEGLDLLDKLGFKTNKERKRCSNIEEVIQYVEGWVEKRPDLPYDIDGIVIKVDSL 290 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG A+SPRW I++KF ++ T L DI++ +GRTG++TP A LEPV + G + Sbjct: 291 PLQQELGTTAKSPRWAIAYKFPAEEVVTLLKDIELSVGRTGVVTPTAILEPVKVAGTTVQ 350 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DI++GD V+VK+AG++IP+VV+++ R D Q F Sbjct: 351 RASLHNEDLIR-----------EKDIKIGDYVVVKKAGDIIPEVVNVLEERRTGDEQDFH 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 400 MPEECPECGSGLVR-LEKEV-----ALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEK 452 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + FK + + ADI+ LQR Q ++ G+ SV NL ++I ++ S Sbjct: 453 VISQLFKE---GLIVDV-ADIYRLQREQLLQLERM------GEKSVDNLLNAIEASKSNS 502 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ A++LA+ + + I+N+ + D L + +GD +A Sbjct: 503 LERLLFGLGIRHVGAKAAKTLAQEF-------ENIDNLKVASKD---QLTAINEIGDKMA 552 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660 A+V +++ V L+ E+ + E + S K +V TG L++ Sbjct: 553 DAVVAYFEKEE----VMELIGELKTAGVNTEYKGPKPVKVDEIDSYFAGKTIVLTGKLEQ 608 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R++A++ + +LG V+ +S+KTD+++ G++ GSKL KAQ+L ++I +EE+ + Sbjct: 609 LGRNEAKQKIEELGGKVTGSVSKKTDLLVAGEDAGSKLSKAQELQIEIWDEEKLI 663 >gi|312135376|ref|YP_004002714.1| DNA ligase, nad-dependent [Caldicellulosiruptor owensensis OL] gi|311775427|gb|ADQ04914.1| DNA ligase, NAD-dependent [Caldicellulosiruptor owensensis OL] Length = 673 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 252/703 (35%), Positives = 396/703 (56%), Gaps = 49/703 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L I+YHD YY P I D EYD L R + +P+ P+ P + Sbjct: 6 KKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVL---PDSPTQR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ +V H +P LSL ++N +L F R+ D + + +E KIDG Sbjct: 63 VGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSDFD---YVVEYKIDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K++ Sbjct: 120 SVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKDE 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F+ LN E +ANPRNAA+G LR+L+P R L+ FV + + E + E Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNV-QWCEKEIETHAE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ MR LGF V+ + +++ R +LP++IDG V K+++ L+ G Sbjct: 237 ALEYMRKLGFKVSPDYVVCKDIKEVYEVIRKIEEKRDSLPFEIDGAVVKLNQLRLRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 E A+SPRW +++KF ++ T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCT G+ C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + N+ FG S NL +I +N L+R I++ Sbjct: 459 RG----LIKTPADIYYLKFED------LVNLERFGVKSTNNLLKAIQASKNRPLDRLIYA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S I+++ + L+L P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEEQLLAL---PDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E LK + +K S+ +++ V TG L K R++A+E + LGA Sbjct: 559 RQEQTRHLIER-LKAAGVNTVSEKKAKSNILKDYTFVLTGALSKYSRNEAKEILESLGAK 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT +IVG +PGSK KAQQLGVKI+NEE F L++ Sbjct: 618 VTESVSKKTTAVIVGQDPGSKYTKAQQLGVKILNEEDFEKLVK 660 >gi|229042193|ref|ZP_04189947.1| DNA ligase [Bacillus cereus AH676] gi|228727128|gb|EEL78331.1| DNA ligase [Bacillus cereus AH676] Length = 669 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 395/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q D ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T ++SY E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVISYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD++ L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKEIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|147678862|ref|YP_001213077.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI] gi|190359268|sp|A5CZ68|DNLJ_PELTS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146274959|dbj|BAF60708.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI] Length = 679 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 250/699 (35%), Positives = 382/699 (54%), Gaps = 57/699 (8%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 I +H+ YY +P I D++YD L R + + FP L P P ++GG Sbjct: 19 IEHHNYLYYVLDRPAITDAQYDRLMRELERLEKQFPALV---TPYSPTQRVGGRPREGFA 75 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 V H P LSL ++ +LR F R+ Q + + +E KIDG +++ YE G Sbjct: 76 AVRHLSPMLSLANAFDERELRDFDRRVR---QALPGEQVRYVVELKIDGLAVSLYYENGI 132 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RGDG +GED++ ++ + ++P L +P +EVRGE ++ K F LN+ Sbjct: 133 LVRGATRGDGDTGEDITENLKTVRSVPLRLRRPVP-ALEVRGEAFMPKEAFSRLNEGREE 191 Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS---EIFAKGQ-------YE 256 G +ANPRNAA+G LR+L+P +R L+ FV+G G +F G+ E Sbjct: 192 AGETLFANPRNAAAGSLRQLDPKITASRQLDLFVYGTGYGEWGRAVFPDGERTAPQEHAE 251 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ ++ LGF VN R + +V Y ++ R LPY +DGLV KV+ + Q++LG Sbjct: 252 VLELLKELGFKVNPEYRLFDRLDELVEYCLGWQARRFELPYAVDGLVIKVNSLAQQERLG 311 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW +++KF +QA T++ DI +++GRTG+LTP A LEPV + G ++ ATLHNE Sbjct: 312 ATMKSPRWAVAYKFPPEQAVTKVKDIFVRVGRTGVLTPTAELEPVRLAGTTVSRATLHNE 371 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +DIR+GD+VLV++AG++IP+VV ++ ER + ++ P CP Sbjct: 372 DIIR-----------EKDIRIGDKVLVQKAGDIIPEVVAVLKEERTGAEKAWAMPGRCPS 420 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VVR + AA RCT +AC A+ E L HF SRDA +I GLG + Sbjct: 421 CGAGVVR------AEGEAAVRCT-NMACPARLQEGLIHFASRDAMDIAGLGPAVIAQLVS 473 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A + PAD++ L+ ++ G S NL ++I + SL R IF+ Sbjct: 474 ----AGLVGDPADLYALRYEDLVPLERL------GPKSARNLLEAIEASKGRSLARLIFA 523 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG A+ LA +Y Q ++ +++ ++ L+ +P +G IA +IVEF+ Sbjct: 524 LGIRHVGERAAKILANHY-------QSLSGLMSATQEE---LVNIPEIGPKIAASIVEFF 573 Query: 617 QNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 N +N ++ L+K V+ + + + K V TG L+ R +AQE + LG Sbjct: 574 SNEQNRKVIDKLVKAGVNTLTEKVIREGGGPLNGKVFVLTGVLKDFSRQQAQELIESLGG 633 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +S+ +SR TD ++ G+NPGSK EKA LGVKI++E +F Sbjct: 634 RISSSVSRNTDFVVAGENPGSKYEKALTLGVKILDENEF 672 >gi|196045221|ref|ZP_03112453.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108] gi|196023805|gb|EDX62480.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108] Length = 669 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E +K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F+++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFEAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLAVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|293569137|ref|ZP_06680444.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071] gi|291588184|gb|EFF20025.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071] Length = 679 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 248/714 (34%), Positives = 399/714 (55%), Gaps = 63/714 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 6 MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KVTH IP SL +++ E+L F R+ QK + + E Sbjct: 63 DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG GE+++ ++ + ++P + L P IEVRGE Sbjct: 119 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ + IT R L+ F++ + + Sbjct: 177 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + SY E R LPY+IDG+V KV+EF Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 296 SLQDQLGFTVKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V L+ + A RC C AQ E LKHFVSR+A NI+GLG + Sbjct: 405 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLKHFVSRNAMNIDGLGPR 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + D + AD++ L + + KI+ + S N+ +I+ ++ S Sbjct: 458 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSK----------SDYESIIALDTIGDIIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660 ++V ++ N V L+ E+ + E + V S + K +V TG L + Sbjct: 558 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTR 613 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q Sbjct: 614 FTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 667 >gi|229148695|ref|ZP_04276945.1| DNA ligase [Bacillus cereus m1550] gi|228634703|gb|EEK91282.1| DNA ligase [Bacillus cereus m1550] Length = 669 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 396/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q D ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD++ L + Q + FG+ S TNL +I K + S Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIEKSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMKYKGIKIADLQNVESYFVGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|325838923|ref|ZP_08166729.1| DNA ligase (NAD+) [Turicibacter sp. HGF1] gi|325490664|gb|EGC92975.1| DNA ligase (NAD+) [Turicibacter sp. HGF1] Length = 662 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 260/718 (36%), Positives = 385/718 (53%), Gaps = 62/718 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E L IE+ K L+ E YY KP + D EYD L + + P+L + Sbjct: 1 MEKLRIEELTKLLTQYNHE-------YYVLDKPSVSDREYDRLMQELMELEEKHPELKSN 53 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P ++GG++ K+ H P LSL +N DLR F TR+ + K + Sbjct: 54 ---TSPTVRVGGKVLEGFNKIEHEKPMLSLSNAFNEGDLRDFDTRVKKVSPKAT-----Y 105 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E KIDG +T+ Y G FV A RGDG GED+S ++ I TIP ++ N P +EVR Sbjct: 106 VCELKIDGLAVTLHYNNGAFVKGATRGDGVIGEDISENLKTIKTIPLHINNNQP--LEVR 163 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY+SK LN+E A G + +ANPRNAA+G LR+L+ R L F + + + Sbjct: 164 GEVYMSKATLEKLNEERAAKGEELFANPRNAAAGSLRQLDSRIAAKRNLAMFCYAVPSAA 223 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ E LQK+ LGF VN + ++ Y N + R LPY+IDG+V KV+ Sbjct: 224 DLGCTTHEESLQKISELGFNVNPNRQVCENIDEVLEYINRWTNARFDLPYEIDGIVIKVN 283 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q +LG +SPRW I++KF ++ T L DI +GRTG++TP A LEPV + G Sbjct: 284 QLQEQDKLGNTVKSPRWAIAYKFPAEEVETILTDIIFTVGRTGMVTPNAVLEPVRVAGTR 343 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNEDY+ RDIR+ DRV++++AGE+IP+VV +++ R+ D P Sbjct: 344 VSRATLHNEDYVT-----------SRDIRINDRVIIRKAGEIIPEVVKPVIDARNGDEIP 392 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F S CP C S +VR+ A + C + C A+ +E L HFVSRDA NI+GLG Sbjct: 393 FEMISTCPRCSSELVREAGE------ADYYCL-NIDCPARIVESLSHFVSRDAMNIDGLG 445 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ F+ + I ADI+ L + Q ++ GD TNL ++I + Sbjct: 446 IKVVEQLFEHK----LIENVADIYRLTKEQLLPLERM------GDKKATNLLNAIEASKE 495 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SLE+ +F LGIRHVG++ A+ LA + + +++++ DD+ V VGD+ Sbjct: 496 NSLEKLLFGLGIRHVGSKTAKVLATQF-------ENMDSLMDAKFDDFKV---VAEVGDV 545 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENKKLVFTGTLQKIQ 662 IA +IV ++ N+ + LKE+ ++ + N K +V TGTL+ + Sbjct: 546 IANSIVHYFSQTANVELINQ-LKELGLNMSYKGARLADANTEHVFFGKTVVLTGTLETLS 604 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R +A + LGA VS +S TD +I G GSKL KAQQLGV +++E FL ++ + Sbjct: 605 RKEAGIKLESLGAKVSGSISSNTDYLIAGAKSGSKLTKAQQLGVTVLDEATFLSMMNE 662 >gi|323490410|ref|ZP_08095622.1| DNA ligase [Planococcus donghaensis MPA1U2] gi|323395909|gb|EGA88743.1| DNA ligase [Planococcus donghaensis MPA1U2] Length = 668 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 249/707 (35%), Positives = 401/707 (56%), Gaps = 55/707 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A + + L + + + YY KP + D+ YD L + +PDL P+ P Sbjct: 5 KAEQRVDELNEMLRNYGHAYYVLDKPAVPDAIYDQLLNELIDLETLYPDLVF---PDSPT 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG ++ KVTH P LSL ++ EDLR+F R+ K D + E KID Sbjct: 62 QRVGGAPLSTVDKVTHERPMLSLSNVFGEEDLREFDKRVRSGAGDKVD----YVCELKID 117 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++ YE GKFV A RGDG GED++ +R I IP L L +EVRGEV++ K Sbjct: 118 GLAVSLLYEDGKFVKGATRGDGRVGEDITVNLRTIRAIP--LKLKDAVTLEVRGEVFMPK 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F ALN++ G + +ANPRNAA+G LR+L+P +R L+ F++G+G E + + Sbjct: 176 KSFHALNEQRSEQGEELFANPRNAAAGSLRQLDPKIAASRNLDVFIYGIGGDGETYRLAE 235 Query: 255 Y-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + E L + LGF N + + +++Y + R+ LPY+IDG+V KV++F Q+ Sbjct: 236 HDESLDYLAKLGFKTNQERQVCTSVEEVLAYIEKWTEKRNDLPYEIDGIVIKVNQFLYQQ 295 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SP+W ++KF ++ T + DI++ +GRTG++TP A L+PV++ G + A+L Sbjct: 296 ELGFTAKSPKWATAYKFPAEEVMTTVRDIELSVGRTGVVTPTAILDPVSVAGTTVQRASL 355 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED IK +DIR+GD+V++++AG++IP+VV +I+++R + PF P+ Sbjct: 356 HNEDLIK-----------EKDIRIGDKVIIRKAGDIIPEVVSVILDQRTGEELPFEMPTH 404 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ ++ Sbjct: 405 CPACDSELVR----IEGEV--ALRCVNP-QCPAQITEGLIHFVSRNAMNIDGLGEKVIEQ 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ E I +DI+ L + Q ++ D S +NL +I+ R+ S+E+ Sbjct: 458 LYR-EGLVHDI---SDIYKLTKEQLVELDRM------ADKSASNLVAAIDASRSNSMEKL 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIRHVG AR L++++ + + +IA ++ LI V +GD +A +IV Sbjct: 508 LFGLGIRHVGERGARILSEHFGT-------LEQLIAATKEE---LIEVHEIGDKMADSIV 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQE 668 ++ N VE L+E + ++ V E KK+V TG L+++ R +A Sbjct: 558 MYFDNEEVRALVER-LREANVNLSYTGTRVRVEEGANAFAGKKIVLTGKLEQMTRQEASA 616 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + LG ++ +S+KTD++I G+ GSKL+KA++L V+I +EE+ + Sbjct: 617 QIEALGGKLTGSVSKKTDLLIAGEEAGSKLDKARELKVEIWDEERLV 663 >gi|228906068|ref|ZP_04069957.1| DNA ligase [Bacillus thuringiensis IBL 200] gi|228853477|gb|EEM98245.1| DNA ligase [Bacillus thuringiensis IBL 200] Length = 669 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 395/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q D ++ + Sbjct: 59 -SPSVRVGGTI-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 SLQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD++ L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|300214970|gb|ADJ79386.1| DNA ligase(Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus salivarius CECT 5713] Length = 672 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 250/714 (35%), Positives = 403/714 (56%), Gaps = 65/714 (9%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L +++ + YY P + DS YD +R + A PDL ++ P+ ++G Sbjct: 9 ELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSPS---QRVG 65 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G++ KV+H IP LSL +++ E+L +F+ R+ ++K D ++ E KIDG I Sbjct: 66 GKVLSGFTKVSHDIPMLSLGDVFSKEELIEFLERLENSVEQKLD----YSCELKIDGLAI 121 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ YE GKF+ + RG+G GED++ ++ I IP + LN P IEVRGE Y+ K F+ Sbjct: 122 SLTYENGKFIKGSTRGNGVIGEDITENLKTIKAIP--MELNEPVSIEVRGECYMPKKSFV 179 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM 257 LN + A G+ +ANPRNAA+G LR+L+ T IT R L+ F++ L + ++ K Q E Sbjct: 180 ELNTKREAEGQAVFANPRNAAAGSLRQLD-TKITASRNLSTFIYYLMEPEKLGIKTQTEA 238 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L K+ GF VNN +Q T I +Y ++ R+ LPYDIDG+V K + F++Q Q+G Sbjct: 239 LNKLESWGFKVNNESKQVKTKEEIFAYIDKATDQRANLPYDIDGIVLKAESFAVQSQVGN 298 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + PRW I++KF + T++LDI+ +GRTG++TP A +EPV + G + A+LHN D Sbjct: 299 TVKVPRWAIAYKFPPDEQETKVLDIEWTVGRTGVVTPTAVMEPVTLAGTTVARASLHNPD 358 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 Y++ +DIR+GD V + +AG++IP++ ++++ +R D+ + P+ CP C Sbjct: 359 YLR-----------EKDIRIGDTVKLHKAGDIIPEISEVVLAKRSEDSVEYQIPTECPEC 407 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +++V L+ + A RC C A E L HF SR+A +I GLG + ++ + Sbjct: 408 GAKLVH-LDDE-----VALRCINP-QCPALVKESLTHFASRNAMDIRGLGPRIIEQLYNR 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E I+ A I++L Q + K F + S NL +I+ RN S+ER IF L Sbjct: 461 E----MIKDVAGIYSLTFEQLITLDK------FKEKSANNLLTAIDNSRNNSIERLIFGL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA++AR LA+ Y S N A+ ++ I+ + +G II ++ ++ Sbjct: 511 GIRHVGAKVARILAENYKSMDNLAKAKSDEIS----------TIDSLGKIIGDSVEMYFA 560 Query: 618 NPRNICAVEALLKEVSPS------IGRH-----EKNVSSEIENKKLVFTGTLQKIQRHKA 666 + V LL E+ + +G+ E + S ++V TGTL ++R +A Sbjct: 561 DEH----VMELLDELRQAGVNLEFLGKTREEQLESSTDSSFNGLRVVLTGTLDTLKRSEA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + ++ GA V+ +S+KTD++I G + GSKL KAQ+L V++MNE +F+ +++ Sbjct: 617 KSWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAQELNVRVMNEAEFIQQMEE 670 >gi|323697702|ref|ZP_08109614.1| DNA ligase, NAD-dependent [Desulfovibrio sp. ND132] gi|323457634|gb|EGB13499.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans ND132] Length = 684 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 252/718 (35%), Positives = 404/718 (56%), Gaps = 63/718 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + ++ L Q+I +H+ YY P I D E+D L R A+ P+L +DPN P Sbjct: 4 ESVAERVAELRQKIDHHNYRYYVLDDPEISDQEFDVLFRELAALEAEHPEL---DDPNSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE H++ SL+ +++ F R+ + + D + + +PK+ Sbjct: 61 TRRVGGEPASGFTPYEHALRLYSLDNAMDLDAWYAFHERVAKGVGRAD---VAYWADPKM 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEV 191 DG + + YE G++V AA RGDG GEDV+A +R + +P LSL ++PE++EVRGEV Sbjct: 118 DGLALEVIYENGRYVRAATRGDGLVGEDVTANMRTVMNLP--LSLHGDDVPELLEVRGEV 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT---- 246 ++ DF ALN G K +ANPRNAA+G +R+L+P +R L F +G+G+ Sbjct: 176 VMANRDFAALNARQEEKGEKVFANPRNAAAGTIRQLDPKVAASRPLRFMAYGVGRVEWPG 235 Query: 247 -SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + +A Q +++ +R LGF + V+ + + Y+ ++ +IR+TLP++IDG+V K Sbjct: 236 RASDWAT-QQALMEGLRDLGFAIPPDVKLCASAKAVADYFQQLGAIRATLPFEIDGMVAK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ +Q+ LG AR+PRW ++ KF Q TRL I +Q+GRTG+LTPVA LEPV + G Sbjct: 295 VNDREMQEALGYTARAPRWALALKFPAHQTRTRLNAIRVQVGRTGVLTPVAELEPVELAG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHN+ YI RD+RVGD VL++RAG+VIP+V+ + +R +A Sbjct: 355 VVVSNATLHNKGYI-----------AERDLRVGDTVLIQRAGDVIPQVLSADLEQRPENA 403 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +PF FP CP+C+S V D G+ V CT AC A+ ++RL HFVS+ ++EG Sbjct: 404 EPFVFPMVCPVCESPAVED-----GERVV---CTNP-ACPAKTVQRLIHFVSKAGMDMEG 454 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK- 544 +GKQ + +ED + AD+FTL++ T + G GD S N +I K Sbjct: 455 VGKQWVRKL--AEDGVLN--SAADLFTLKK------TDLLKYGGMGDKSAENFLKAIEKA 504 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + L R + LGIRH+G + AR+LA + + ++ + DD L + + Sbjct: 505 KAEAPLWRLVAGLGIRHIGEQAARTLAARF-------KNLDELFGATLDD---LTGLDGI 554 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI 661 GD++A+++++F + N ++ + V P G + S E + K +FTGTL I Sbjct: 555 GDVMAESVLDFRVDAANREMIDRFRELGVWPEGGAPAEEPSDELPLAGKVFIFTGTL-PI 613 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A V G + +S+K D ++ G+ GSK+ KA++LG+++++ + F LL+ Sbjct: 614 SRDEAWAMVEARGGIPVKSISKKVDYVVAGEKAGSKIAKAEKLGLEVIDFDAFKALLE 671 >gi|229171138|ref|ZP_04298732.1| DNA ligase [Bacillus cereus MM3] gi|228612316|gb|EEK69544.1| DNA ligase [Bacillus cereus MM3] Length = 669 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/712 (35%), Positives = 398/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A++ + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG M L +F KVTH P LSL +N DLR F R+ Q DD ++ + Sbjct: 59 -SPSIRVGG-MVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LE V + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEAVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYH 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD+++L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ E + + ++ L I +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHF--------ETMDALVKATEEELKAINE--IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMAYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|239618216|ref|YP_002941538.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1] gi|239507047|gb|ACR80534.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1] Length = 672 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/708 (36%), Positives = 389/708 (54%), Gaps = 51/708 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE+A+K L +E++YH YY + PII D EYD + + + +P+L P+ Sbjct: 8 IERAKK----LREELNYHAYRYYVLNDPIITDEEYDRMLKELQELEKKYPELI---TPDS 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +IG + +V HS SL+ ++ E+L+ F RI + + + + E K Sbjct: 61 PTQRIGAKPLNGFEQVIHSSRLYSLDNTYSEEELKGFDRRIKKLL---NVEQLDYVCELK 117 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG +T+RYE+G V A RGDG GE+V+ IR I +IP L L P IE+RGEVY+ Sbjct: 118 IDGLSVTLRYEEGILVLGATRGDGTVGENVTKNIRTIKSIP--LRLRKPLTIEIRGEVYL 175 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 K++F +NDE +ANPRNAA+G LR+L+P ++ R L+ F + + + Sbjct: 176 PKSEFKKINDERAEQELPLFANPRNAAAGTLRQLDPKEVAKRNLDAFFYQIVSPENYELE 235 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q+E+LQ ++ +G R + ++ ++ E R+ L Y IDGLV KV+ Q Sbjct: 236 TQWEVLQFLKEIGMKTEPHARLVSDISEVIEFWKEWSESRNNLDYAIDGLVVKVNRIEFQ 295 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG A+SPRW I+ KF +QA T+LLD+ Q+GRTG++TPVA LEPV + G ++ AT Sbjct: 296 NKLGYTAKSPRWAIAFKFPAEQARTKLLDVTFQVGRTGVITPVAELEPVKLAGTIVKRAT 355 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DYI+ RDIR+GD V+V++AGE+IP++V I R + PS Sbjct: 356 LHNFDYIR-----------DRDIRIGDTVIVEKAGEIIPQIVKPIAETRSGKEKVIEPPS 404 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C +V K + A RC AC A+ R+ FVSR+A +I GLG++ + Sbjct: 405 SCPVCGGKV-----GKAKEDEVALRCLNP-ACPAKTERRILLFVSRNAMDINGLGEKMIK 458 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 S ++ PAD++ L ++ N G G+ ++ N Y + K R L + Sbjct: 459 RLVHS----GLVKSPADLYKL---TPFDLAQLGN--GIGEKTIRNFYKELEKSRKRPLHK 509 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + LGI VG ++AR LA+++ + A N L+ VP +G +A+ I Sbjct: 510 LLAGLGIPGVGVKLARDLAEHF----------KTLDALQNATIDQLLEVPGIGLELAKNI 559 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 VEF+ P +E L KEV+ S ++ KK V TGTL+ R +A+E + Sbjct: 560 VEFFNLPEIKEEIEHLKKEVNTS--ERSSKKEELLKGKKFVLTGTLKNFTRKEAEELIVS 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LG VS+ +S+ TD ++VG+NPGSK +KA+ L VK +NEE+F+ L+++ Sbjct: 618 LGGKVSSSVSKNTDFVVVGENPGSKFQKAKALNVKTINEEEFIKLIRE 665 >gi|307289585|ref|ZP_07569529.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109] gi|306499399|gb|EFM68772.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109] gi|315164584|gb|EFU08601.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1302] Length = 676 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 245/713 (34%), Positives = 399/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+++ K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVHKAIGK----PVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668 >gi|218230787|ref|YP_002365135.1| NAD-dependent DNA ligase LigA [Bacillus cereus B4264] gi|254781552|sp|B7H4U8|DNLJ_BACC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218158744|gb|ACK58736.1| DNA ligase (NAD(+)) [Bacillus cereus B4264] Length = 669 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 395/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q D ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD++ L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMKYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|228956728|ref|ZP_04118514.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229143090|ref|ZP_04271523.1| DNA ligase [Bacillus cereus BDRD-ST24] gi|296501121|ref|YP_003662821.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171] gi|228640363|gb|EEK96760.1| DNA ligase [Bacillus cereus BDRD-ST24] gi|228802916|gb|EEM49748.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322173|gb|ADH05101.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171] Length = 669 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 395/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q D ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDSANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD++ L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|257887196|ref|ZP_05666849.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733] gi|257823250|gb|EEV50182.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733] Length = 678 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 248/723 (34%), Positives = 403/723 (55%), Gaps = 63/723 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 5 MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 61 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KVTH IP SL +++ E+L F R+ QK + + E Sbjct: 62 DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG GE+++ ++ + ++P + L P IEVRGE Sbjct: 118 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ + IT R L+ F++ + + Sbjct: 176 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + +Y E R LPY+IDG+V KV+EF Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V L+ + A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 404 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 456 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + D + AD++ L + + KI+ + S N+ +I+ ++ S Sbjct: 457 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 506 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSR----------SDYESIIALDTIGDIIA 556 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660 ++V ++ N V L+ E+ + E + V S + K +V TG L + Sbjct: 557 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTR 612 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q L Q Sbjct: 613 LTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQMAEALAQ 672 Query: 721 YNT 723 ++ Sbjct: 673 SHS 675 >gi|296126514|ref|YP_003633766.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563] gi|296018330|gb|ADG71567.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563] Length = 663 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 249/707 (35%), Positives = 395/707 (55%), Gaps = 48/707 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+A++++ L + I+YH+ YY P I D EYD L R + + FP+L + Sbjct: 1 MNKEEAKQKIKQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKD--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P NK+GG + K H I SL + N E+ F R+ R + D ++I +T+E Sbjct: 58 DSPTNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLDFDNRMQR---ELDASNIKYTVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + + YEKGK A+ RGDG GE+V+ ++ + +P+ S+ + VRGE Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMSNVPK--SIKEKNKLIVRGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 I+K DF ALN E + P+AN RNAASG LR+L+ + R L FF + + + Sbjct: 173 LITKKDFEALNKEREELEEIPFANARNAASGGLRQLDSAESKKRRLKFFAYQIANYKDFD 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +Y+ ++ + LGF V GV ++ Y +++ RS + Y+IDGLV KVD+ Sbjct: 233 LTNEYKSMEFLSDLGFTVE-GVHPNIDAKKVLETYYDIQEKRSKMDYEIDGLVIKVDDVK 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG +R+PR+ ++ KF ++ T L +I++Q+GRTG LTPVA+LEPV +GG ++N Sbjct: 292 YQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 TLHN + IK +DIR+GD V+V R+G+VIPK+ +++ +R D++PF F Sbjct: 352 VTLHNPNEIK-----------SKDIRIGDTVVVIRSGDVIPKITRVVLEKRPEDSKPFEF 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C D G ++ RC C ++ +++FVS+ A N+E +GK+ Sbjct: 401 PKKCPVCGG----DTAVTDGDVIV--RCINE-ECPSKITRYIEYFVSKPAMNMERIGKEW 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F KS ++ PAD++ + R K E + GD + + +SI +N +L Sbjct: 454 IAVFTKSG----LVKTPADLYKITR---DDLFKFERM---GDKLASYMLESIENSKNTTL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +RFI++LGIR VG A LAKY+ S +NF + A D L + +G+I A+ Sbjct: 504 KRFIYALGIRQVGETTADLLAKYFTSIENFKK------AAIED----LQNIEGIGEISAK 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I +F N R + ++ LL + V S + K +V TG+++ R A+E Sbjct: 554 SIYDFLHNERTLKLIDDLLAAGVNPVFEKVVTVESPLTGKNVVITGSIEGFTRTSAKEAA 613 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +LGA V + +S+ TDI+IVG+ GSKL+KAQ LG+ IM ++F+ L Sbjct: 614 ERLGAAVQSAVSKNTDILIVGEKAGSKLKKAQDLGIAIMEADEFIKL 660 >gi|227515527|ref|ZP_03945576.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931] gi|227086140|gb|EEI21452.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931] Length = 679 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 253/727 (34%), Positives = 405/727 (55%), Gaps = 67/727 (9%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ +QA+ EL+ L +++ YY+ P + D YD +R I FPDL Sbjct: 7 VSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQRFPDLVV- 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--- 125 P+ P ++GG L KV H IP LS+ +++ +L F R + DNS Sbjct: 66 --PDSPTQRVGGAAESQLNKVIHEIPMLSMGDVFSPAELADFNRR-------QQDNSDVK 116 Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + LE KIDG +++ YE G+ V + RG+G GEDV+ ++ I +IP+VL P Sbjct: 117 VDFDYNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPE--PL 174 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242 +E RGE Y+ K F+ LN+ A G+ +ANPRNAA+G LR+L+P R L+ F++ Sbjct: 175 SLEFRGECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTFMYY 234 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + Q + L+KMR LGF VN R ++ + +Y E R LPY IDG+ Sbjct: 235 VPDYQALGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGIDGI 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KV++ + Q LG + PRW I++KF ++ +T + DI+ +GRTG +TP A ++PV Sbjct: 295 VEKVNDLATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMDPVQ 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ A+LHN DY+ +DIR+GD VL+ +AG++IP++ +I+ +R Sbjct: 355 LAGTTVSRASLHNPDYL-----------AEKDIRLGDTVLLHKAGDIIPEISRVIIEKRP 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D++P+ P+ CP C + +V L+ + A RC + C AQ E L HF SR+A N Sbjct: 404 ADSKPYEVPTTCPECGADLVH-LDDEV-----ALRCVNPM-CPAQIKEGLAHFASRNAMN 456 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLG + ++ + ++ AD++ L+ Q + K FG+ S++NL +I Sbjct: 457 IDGLGPKIIEQLWDK----GMVKDVADLYRLEAAQLLTLPK------FGEKSISNLLTAI 506 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 R+ S ER +F LGIRHVGA++A+ LA + S ++ ++A D ++ V Sbjct: 507 ANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKS-------VDALMAA---DAATISAVD 556 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEV-------SPSIGRHEKNVSSEIENKKLVFT 655 +G II A+ ++QN + + A LKEV +P+ E S+E K++V T Sbjct: 557 SIGPIIGDAVATYFQN-EQVHQLIAELKEVGVNMDYLAPTTSATE---SAEWAGKRVVLT 612 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G L K+ R +AQE+++ GA V+ +S+KTD++I G+ GSKLEKAQ LG+++ +E++F Sbjct: 613 GKLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQTLGIEVWDEDRFD 672 Query: 716 FLLQQYN 722 +++ N Sbjct: 673 QAMKEEN 679 >gi|30018549|ref|NP_830180.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 14579] gi|229125792|ref|ZP_04254818.1| DNA ligase [Bacillus cereus BDRD-Cer4] gi|81436035|sp|Q81IP2|DNLJ_BACCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29894090|gb|AAP07381.1| NAD-dependent DNA ligase [Bacillus cereus ATCC 14579] gi|228657649|gb|EEL13461.1| DNA ligase [Bacillus cereus BDRD-Cer4] Length = 669 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 395/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q D ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD++ L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|256959858|ref|ZP_05564029.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96] gi|293385046|ref|ZP_06630880.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712] gi|293389317|ref|ZP_06633778.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613] gi|312906035|ref|ZP_07765048.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512] gi|312909381|ref|ZP_07768237.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516] gi|256950354|gb|EEU66986.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96] gi|291077724|gb|EFE15088.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712] gi|291081339|gb|EFE18302.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613] gi|310628030|gb|EFQ11313.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512] gi|311290405|gb|EFQ68961.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516] Length = 676 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 246/713 (34%), Positives = 399/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+II Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRATAE----------EIVALDSIGEII 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668 >gi|228937587|ref|ZP_04100225.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970474|ref|ZP_04131125.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977043|ref|ZP_04137446.1| DNA ligase [Bacillus thuringiensis Bt407] gi|228782660|gb|EEM30835.1| DNA ligase [Bacillus thuringiensis Bt407] gi|228789206|gb|EEM37134.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822068|gb|EEM68058.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938080|gb|AEA13976.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar chinensis CT-43] Length = 669 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 395/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q D ++ + Sbjct: 59 -SPSVRVGGTI-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD++ L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|83590843|ref|YP_430852.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073] gi|123739230|sp|Q2RGY0|DNLJ_MOOTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83573757|gb|ABC20309.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073] Length = 666 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 263/714 (36%), Positives = 393/714 (55%), Gaps = 53/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + AR+ + L + I H+ YY +P I D EYDAL + A+ A+P+L P Sbjct: 1 MDLAAARQRVEELRRLIEEHNYRYYVLDQPSISDREYDALMQELIALEEAYPEL---RTP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG +V H LSL +N DL +F R+ + + + +E Sbjct: 58 DSPSQRVGGAPREEFNQVRHPQVLLSLNDAFNEGDLLEFDRRVRDLAGR----PVEYVIE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + + Y G F A RGDG GE+V+A ++ IP +P L +P ++ VRGEV Sbjct: 114 AKIDGLAVALTYRDGLFTLGATRGDGQVGEEVTANLKTIPALPLRLRRPLPFLV-VRGEV 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K F ALN G +ANPRNAA+G LR+L+P +R L+ FV+ + + Sbjct: 173 YMPKVAFTALNAAREEAGEPLFANPRNAAAGSLRQLDPKITASRSLSLFVYQVISLTGAE 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI----RSTLPYDIDGLVYKV 306 Q L + LGFPVN A ++ E+K+ R++LPY+IDGLV KV Sbjct: 233 VATQAGALDFLAELGFPVNPYRVVAPDIQAVL---EEVKAWTPERRASLPYEIDGLVIKV 289 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +L LG A++PRW +++KF +QA+ R+ I +++GRTG+LTP A L PV + G Sbjct: 290 NDLALHSVLGATAKAPRWAMAYKFPAEQATARVEGIILRVGRTGVLTPTAVLTPVRLAGT 349 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATLHNEDYI+ +DIR+GD V+V++AG++IP+VV +I R + Sbjct: 350 TVSRATLHNEDYIR-----------EKDIRIGDTVIVQKAGDIIPEVVAVIPERRTGSEE 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F+ P CP C + VVR G+ AAHRCTGGLAC AQ LE + HF SR A +I+GL Sbjct: 399 VFTMPERCPACGAAVVR----PPGE--AAHRCTGGLACPAQVLEGIIHFASRGAMDIQGL 452 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + A I AD++ L ++ K+E FG S +NL +I + Sbjct: 453 GPAIVAQLLE----AGLIHDAADLYYL---KEEDLLKLER---FGQQSASNLLAAIAASK 502 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 LER IF+LGIR+VG AR LA ++ S ++ + A ++ +L P +G Sbjct: 503 KQPLERLIFALGIRNVGQRAARVLADHFGS-------LDKLAAATVEELTAL---PDIGP 552 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IA+ I EF+ PRN +E L K + + + K V TGTL + R +A Sbjct: 553 RIAENIREFFGEPRNRAVLEKLKKAGVRLEALNAAAPAGPLTGKVFVLTGTLPGMTRQEA 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +E +T+ G VS+ +SRKTD ++ G+ PGSKL++A++LGV ++N + LL+Q Sbjct: 613 EELITRAGGKVSSSVSRKTDYVVAGEKPGSKLDRARELGVPVINADGLRQLLRQ 666 >gi|228476354|ref|ZP_04061055.1| DNA ligase, NAD-dependent [Staphylococcus hominis SK119] gi|228269637|gb|EEK11143.1| DNA ligase, NAD-dependent [Staphylococcus hominis SK119] Length = 667 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 250/708 (35%), Positives = 387/708 (54%), Gaps = 56/708 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I+ EL L + SY YY P + DSEYD L R I +A P+L +++D Sbjct: 3 NIQNRVNELHDLLNQYSYE---YYVKDNPSVPDSEYDKLLRELIDIENAHPEL-KTDD-- 56 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GGE S KV H P LSL +N E+LR+F RI ++ ++ + E Sbjct: 57 SPTVRVGGEAQSSFEKVNHETPMLSLGNAFNEEELRRFDERI-----REHIGNVEYMCEL 111 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG ++++YE G+FV RGDG +GED++ +R I IP L + P +EVRGE Y Sbjct: 112 KIDGLAVSLKYEDGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNVEVRGEAY 169 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + + F+ LNDE +P+ANPRNAA+G LR+L+P R L+ F++ + ++ A Sbjct: 170 MPRRSFMRLNDEREKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFSA 229 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q + L ++ LGF N+ + G++ Y + R L YDIDG+V KV++ Sbjct: 230 TTQSDALDELDRLGFKTNHERARVEDIEGVLEYIKKWTKQREQLSYDIDGIVIKVNDLDQ 289 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q ++G +SPRW I++KF ++ T L DI++ IGRTG++TP A LEP+ + G ++ A Sbjct: 290 QDEMGFTQKSPRWAIAYKFPAEEVVTELKDIELSIGRTGVVTPTAILEPIRVAGTTVSRA 349 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED IK RDIR+GD V+VK+AG++IP+VV I++ R DA+P+ P Sbjct: 350 SLHNEDLIK-----------ERDIRIGDSVIVKKAGDIIPEVVRSIIDRRPNDAKPYHMP 398 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 399 THCPSCGHELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGNKII 451 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + I+ DIF L + ++ G V NL +I + SLE Sbjct: 452 QQLYHHQ----LIKDVGDIFYLTKEDLLPLERM------GTKKVENLLSAIEHAKQNSLE 501 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 +F LGIRH+GA+ ++ LA+ + + + L+ + +GD +AQ+ Sbjct: 502 HLLFGLGIRHLGAKASQILAEKFETMDRLLKVTEE----------ELVAIHDIGDKLAQS 551 Query: 612 IVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +V + N +E L + + + E E +NK +V TG LQ++ R +A Sbjct: 552 VVTYLDNEDIKALIEKLKDKNVNMIYKGVKSSEIEGHPEFQNKTIVLTGKLQQMTRKEAT 611 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 ++ GA V++ +++ TD++I G++ GSKL KA+Q G +I +E QF+ Sbjct: 612 TWLEMQGAKVTSSVTKSTDLVIAGEDAGSKLSKAEQFGTEIWSESQFI 659 >gi|314936043|ref|ZP_07843392.1| DNA ligase, NAD-dependent [Staphylococcus hominis subsp. hominis C80] gi|313655860|gb|EFS19603.1| DNA ligase, NAD-dependent [Staphylococcus hominis subsp. hominis C80] Length = 667 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/711 (36%), Positives = 394/711 (55%), Gaps = 62/711 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I+ EL L + SY YY P + DSEYD L R I +A P+L +++D Sbjct: 3 NIQNRVNELHDLLNQYSYE---YYVKDNPSVPDSEYDKLLRELIDIENAHPEL-KTDD-- 56 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GGE S KV H P LSL +N E+LR+F RI ++ ++ + E Sbjct: 57 SPTVRVGGEAQSSFEKVNHETPMLSLGNAFNEEELRRFDERI-----REHIGNVEYMCEL 111 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG ++++YE G+FV RGDG +GED++ +R I IP L + P +EVRGE Y Sbjct: 112 KIDGLAVSLKYEDGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNVEVRGEAY 169 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + + F+ LNDE +P+ANPRNAA+G LR+L+P R L+ F++ + ++ A Sbjct: 170 MPRRSFMRLNDEREKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFSA 229 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q + L ++ LGF N+ + G++ Y + R L YDIDG+V KV++ Sbjct: 230 TTQSDALDELDRLGFKTNHERARVEDIEGVLEYIKKWTKQREQLSYDIDGIVIKVNDLDQ 289 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q ++G +SPRW I++KF ++ T L DI++ IGRTG++TP A LEP+ + G ++ A Sbjct: 290 QDEMGFTQKSPRWAIAYKFPAEEVVTELKDIELSIGRTGVVTPTAILEPIRVAGTTVSRA 349 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED IK RDIR+GD V+VK+AG++IP+VV I++ R DA+P+ P Sbjct: 350 SLHNEDLIK-----------ERDIRIGDSVIVKKAGDIIPEVVRSIIDRRPNDAKPYHMP 398 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 399 THCPSCGHELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGNKII 451 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + I+ DIF L + ++ G V NL +I + SLE Sbjct: 452 QQLYHHQ----LIKDVGDIFYLTKEDLLPLERM------GTKKVENLLSAIEHAKQNSLE 501 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 +F LGIRH+GA+ ++ LA+ + + + L+ + +GD +AQ+ Sbjct: 502 HLLFGLGIRHLGAKASQILAEKFETMDRLLKVTEE----------ELVAIHDIGDKLAQS 551 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRH 664 +V + N +I A+ LK+ ++ K V SSEIE NK +V TG LQ++ R Sbjct: 552 VVTYLDN-EDIKALIEKLKD--KNVNMTYKGVKSSEIEGHPEFQNKTIVLTGKLQQMTRK 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A ++ GA V++ +++ TD++I G++ GSKL KA+Q G +I +E QF+ Sbjct: 609 EATTWLEMQGAKVTSSVTKSTDLVIAGEDAGSKLSKAEQFGTEIWSESQFI 659 >gi|188585101|ref|YP_001916646.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF] gi|254781378|sp|B2A5W5|DNLJ_NATTJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|179349788|gb|ACB84058.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF] Length = 663 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 249/704 (35%), Positives = 394/704 (55%), Gaps = 52/704 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K++ +L ++I YH+ YY P I D E+DAL + +P+ + P+ P + Sbjct: 6 QKKVEALREKIEYHNHRYYVLDAPEISDQEFDALMNELIELEQTYPEY---QSPDSPSQR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE +V+H IP LSLE + + L F R+ + QK D + E KIDG Sbjct: 63 VGGEPLDKFPRVSHEIPMLSLENAESQKGLLDFHQRVSKNTQKTDP---VYVAELKIDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++RYE+G V A RGDG +GED++ ++ + +IP L L+ P IE+RGE ++SK Sbjct: 120 ALSLRYEQGILVRGATRGDGTTGEDITPNVKTVRSIP--LKLSKPLDIEIRGEAFMSKAS 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E G P+ANPRNAA+G LR+L+P R L+FF + + Y Sbjct: 178 FERLNQEKAERGEDPFANPRNAAAGSLRQLDPKIPAKRDLDFFPYSVPYIRGENLDSHYS 237 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +++++ LGF +N +R+ T ++SY E + R+ LPY+IDG+V K+++++LQ+QLG Sbjct: 238 AVKELKDLGFKINPYIRKFETMEEVISYCEEWQEKRTKLPYEIDGVVIKLNDYNLQQQLG 297 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I++KF +QA +++ +I I +GRTG LTPV LEPV I G+ + A+LHNE Sbjct: 298 ATSKNPRWAIAYKFPAEQAESQVNNIFINVGRTGALTPVVELEPVRIAGSTVKRASLHNE 357 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D ++ +D+R+GDRV++++AG++IP+VV + R QPF +P CP+ Sbjct: 358 DILR-----------QKDVRIGDRVIIQKAGDIIPEVVKVKEEARTGHEQPFVYPESCPV 406 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S R +N + A RC C AQ ER+ HF SRDA +IEGLG++ ++ + Sbjct: 407 CKSEAKR-INDE-----AILRCINP-GCPAQAKERIIHFSSRDAMDIEGLGEKVVEKLYS 459 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ ADI+ L + + + N+ GFGD S NL +I + + + ++ Sbjct: 460 H----GLIKDVADIYYLAKNE------LSNLEGFGDKSAENLLQAIEESKKNPFNKLLYG 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A+ LA + + ++N++ +D L ++ +G +A +IV F+ Sbjct: 510 LGIRLVGKRAAQLLAFEF-------EHLDNLMKAQIED---LTKINDIGPRMATSIVSFF 559 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLG 674 Q + L K E+N SS+ + K +V TGT R + + + G Sbjct: 560 QLEHTHNLIRKLKKAGVNMKEPTEQNKSSDPSLTGKLVVITGTFDNYTRRELTDLIEAKG 619 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE---EQFL 715 A V++ +S TD ++VG NPGSK +KAQ LG+ I+ E E FL Sbjct: 620 AKVTSNVSSNTDFVLVGANPGSKRDKAQDLGLTIIEESDLEDFL 663 >gi|94263030|ref|ZP_01286849.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1] gi|93456573|gb|EAT06681.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1] Length = 678 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 242/697 (34%), Positives = 385/697 (55%), Gaps = 50/697 (7%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 I+YH+ YY P + D EYD L R + + +P+L ++ P+ ++GG Sbjct: 24 IAYHNHRYYVLDDPELSDGEYDRLFRELEELESRWPELVTADSPS---RRVGGAAAEQFA 80 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 V H++P LSLE + +L F R+ RF DD I + EPK+DG + + YE+G Sbjct: 81 PVRHAVPMLSLENAFAEAELYDFENRLRRFL-NLDDQPIAYYAEPKLDGLAVELVYEQGF 139 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 F + RGDG GE++SA ++ I IP R+ P +++RGEV ++ F ALN++ Sbjct: 140 FTLGSTRGDGLVGENISANLKTIDDIPIRLRGEQAPARLDIRGEVCLTVAGFTALNEQRA 199 Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 G +ANPRNAA+G LR+L+P R L FF +G+ + Q ++++ + LG Sbjct: 200 QNGESLFANPRNAAAGSLRQLDPAISAARPLEFFAYGVADADPLAVGSQQQVIELLAALG 259 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F +++++ ++ RS LPY+IDG+V KV+E +LQK+LG + R+PRW Sbjct: 260 FKTIPHGHLCPDLAAVIAHFQQLAQRRSQLPYEIDGMVAKVNELALQKRLGSKTRTPRWA 319 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I+ KF QA+TRLL ++ Q+GRTG +TPVARLEPV +GG ++ ATLHNE I+ Sbjct: 320 IAAKFPAVQATTRLLAVEYQVGRTGAVTPVARLEPVTVGGVTVSRATLHNEAEIR----- 374 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +D+R+ D VLV+RAGEVIP+VV + +R+ + + P+ CP C S+++R Sbjct: 375 ------RKDLRLEDTVLVQRAGEVIPEVVKPLAEKRNGRQREITLPTHCPECGSQLIR-- 426 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 P ++ RC C AQ+L L HF + +IEGLG++ L+ + Sbjct: 427 -PAAEVVL---RCPNHRHCPAQRLRALIHFCGKAGLDIEGLGQKVLEQLTAA---GLVGD 479 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 IP DIF L+ ++ + G+G+ N+ ++N+RR + L R + +LGIRH+G Sbjct: 480 IP-DIFRLR------AAQLAPLPGWGEKKAANVIAAVNRRRRVELGRLLAALGIRHIGEV 532 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A+ LA+ + + + ++A +D+L + +G A A+V ++ P N + Sbjct: 533 TAQLLARRFGT-------LEGLLAAGEEDFLD---IEGIGPQAAAALVTYFAAPGNREIL 582 Query: 626 ----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 E L E+ P G + S + ++ +FTGTL R +A+ V +LG V+ L Sbjct: 583 RQLQEELGLEIQPEGGPEQ---SQPLGDRVFLFTGTLSNWSRSEAKARVKELGGEVATSL 639 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +R+ ++ G PGSKL KA+++G+ I++EEQF LL Sbjct: 640 NRRVTHLVCGSKPGSKLPKAREMGLTILDEEQFRRLL 676 >gi|307609752|emb|CBW99264.1| DNA ligase [Legionella pneumophila 130b] Length = 650 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 242/685 (35%), Positives = 371/685 (54%), Gaps = 48/685 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + +L+++I +D YY +P++ D+EYD + +P P+ P + Sbjct: 7 KESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFL---SPDSPTQR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + G + + V H P LSL ++ ++L+ FI R + + + F EPK+DG Sbjct: 64 VSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDEPN-QQLVFACEPKLDGL 122 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 + + YE G +AA RGDG GE+++A I+ I ++P R+ N P++IEVRGEVYI K Sbjct: 123 AVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIPKA 182 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAKGQ 254 DF A N +G K +ANPRNAA+G LR+LNP R L + +G+G + Sbjct: 183 DFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISANRPLAIYCYGIGAFEDYKLPNSH 242 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L ++ GF V+ R+A G + YY M + R+ LP++IDG+VYK+D SLQ+Q Sbjct: 243 LEQLNLLKEFGFRVSPETRRAVGIEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQQQ 302 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PR+ +HKF + TRL+ +D Q+GRTG +TPVARLEPV++GG ++NATLH Sbjct: 303 LGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNATLH 362 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I +DIR+GD V+++RAG+VIP+VV +I+ +R +A+ P C Sbjct: 363 NFDEIT-----------RKDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPKNC 411 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S VVR+ + A RC GGL C AQ + HF SR A IEGLG +D Sbjct: 412 PVCGSEVVREADE------AIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQL 465 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 D + AD++ L + S ++ G+ S NL ++ K + + RF+ Sbjct: 466 V---DEGIVHHL-ADLYELDLQTLASLPRM------GEKSAKNLLSALEKSKKTTFNRFL 515 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 ++LGIR +G AR LA++Y + A I ++ N+ +G + A +V Sbjct: 516 YALGIREIGEVGARVLAEHYCDVEGLKAATIEELMTLND-----------IGPVAASHVV 564 Query: 614 EFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N+ ++ LLK P + + N + K +V TGTL + R +A+ + Sbjct: 565 HFFAQAHNLEVIDRLLKLGIHWPKSEKIQVNQQNPFFGKTVVLTGTLSTMGREEAKAKLL 624 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGS 696 LGA VS +S KTD ++ G GS Sbjct: 625 ALGAKVSGSVSSKTDYVVAGSEAGS 649 >gi|228919228|ref|ZP_04082598.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840335|gb|EEM85606.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 669 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 394/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E A+K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q D ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGKEEEYR 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD++ L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|225851368|ref|YP_002731602.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1] gi|254781385|sp|C0QSF6|DNLJ_PERMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225645574|gb|ACO03760.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1] Length = 714 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 269/725 (37%), Positives = 391/725 (53%), Gaps = 68/725 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A + L I YHD YY + P+I D EYD L I FP+L P+ P Sbjct: 29 EDAEAIIEDLRDVIRYHDWRYYVLANPVISDYEYDQLFHLLKDIESRFPELI---TPDSP 85 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++ E+ +V H P LSL+ +N EDLR+F R+ + + I + +EPK Sbjct: 86 TQRVPSELTKEFPQVKHLAPMLSLDNSYNEEDLREFDRRVR---EAVGIDIIEYAVEPKF 142 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192 DG I++ YEK FV A RGDG GED++ IR I T+P ++ I IE+RGEV Sbjct: 143 DGAGISLVYEKDMFVRGATRGDGVVGEDITPNIRVIKTVPLSAEFSVYGIDRIEIRGEVL 202 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 I+K F +N + + G P ANPRNAA+G LR +P ++ R L FV+ + T + Sbjct: 203 INKEKFKEINHQRLEEGLPPLANPRNAAAGSLRLQDPKEVAKRGLEAFVYQI--TYAVDK 260 Query: 252 KG----------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYD 298 G Y+ ++ + LGF + ++ GI + Y E + R PY+ Sbjct: 261 DGNNLLGNKLRYHYDSIKILYELGF--KSPYKEIKVCRGIDEVIDYCREWERKRDDYPYE 318 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KV++ SL +LG + PRW I+ KF +QA+T+++ + Q+GRTG +TPVA+L Sbjct: 319 IDGMVIKVNDISLYDRLGVTSHHPRWAIAFKFRARQATTKIIKVVFQVGRTGAVTPVAKL 378 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV IGG +++ +L NED+IK +DIRVGD VL++RAG+VIP VV ++ Sbjct: 379 EPVEIGGVTVSSVSLINEDFIK-----------EKDIRVGDLVLIERAGDVIPYVVKVVT 427 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R +P FP CP C S +V+ A RC + C AQ +ER+ +F S+ Sbjct: 428 EARTGKEKPIQFPKECPSCGSPLVKPAGE------AVWRCI-NINCPAQVVERIIYFASK 480 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 DA +I GLG+ + F++ F IP DI+ L KI + GFG SV NL Sbjct: 481 DAMDIRGLGEANIRKFYQL---GFLRSIP-DIYRL------PYDKIIQLEGFGQKSVENL 530 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL-- 596 +I + +N + R I LGIR VG AR+L A+ IN + + DW Sbjct: 531 KKAIEESKNRPINRLITGLGIRFVGKVTARTL----------AENINCV--EDLKDWSVE 578 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 L R+P VG ++A +I +F+ NP NI ++ L + + E+ V + E K VFTG Sbjct: 579 DLERLPDVGYVVAHSIYDFFHNPDNIKMIQELKRLGVQTCKEKEEVVENIFEGKTFVFTG 638 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL R AQE V +LG S+ +SRKT ++VG+NPGSK KA LGV+I++E+QF+ Sbjct: 639 TLSCCSREIAQEIVERLGGHASSSVSRKTSYVVVGENPGSKYRKALSLGVQILDEKQFIE 698 Query: 717 LLQQY 721 +++ + Sbjct: 699 MIKDH 703 >gi|257387145|ref|YP_003176918.1| NAD-dependent DNA ligase LigA [Halomicrobium mukohataei DSM 12286] gi|257169452|gb|ACV47211.1| DNA ligase, NAD-dependent [Halomicrobium mukohataei DSM 12286] Length = 700 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/719 (35%), Positives = 385/719 (53%), Gaps = 52/719 (7%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + P+E S ++AR++ L + I YHD YY + P+I D YDAL R +A+ AF D Sbjct: 22 EFEPVEDFSDDEAREQAQRLREAIRYHDHRYYVLADPVIGDRAYDALFARLEALEDAF-D 80 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDD 123 L R P ++GGE L V H P S+++ ++R+F R+ R D Sbjct: 81 LDRE---ASPTQRVGGEPLDELASVEHVAPMGSIDQGGEASEVREFDRRVRDRLSDAGYD 137 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 I + EPK DG + I YE G+F AA RGDG GEDV+ +R I ++P+ L + P+ Sbjct: 138 GEIEYFCEPKFDGLSVEIVYEDGQFQRAATRGDGAVGEDVTENVRTIASVPQRLRGDYPD 197 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 + VRGEVY+ ++ F A N E I G P+ANPRNAA+G LR+L+P+ R L+ F+ G Sbjct: 198 YLAVRGEVYMPRDAFTAYNSERIERGEDPFANPRNAAAGTLRQLDPSVTAERPLSIFLFG 257 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + S F + ++ G V + + + Y + R L Y+IDG+ Sbjct: 258 VLDASVDF-DSHGALHERFPEWGLRVCDRTTVVDDIDAAIDYRDRQLDARDDLDYEIDGV 316 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD+ + LG +R+PRW ++KF ++ T L DI +Q+GRTG LTPVA L+PV Sbjct: 317 VIKVDDRRACELLGATSRAPRWAFAYKFPARKERTTLRDIAVQVGRTGRLTPVALLDPVE 376 Query: 363 IGGALITNATLHNEDYIK--GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 +GG ++ A+LHN I+ G+DA GD V +KRAG+VIP VV+++ + Sbjct: 377 VGGVTVSRASLHNPAQIEELGVDA-------------GDTVRIKRAGDVIPDVVEVVESS 423 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 FSFP CP+C+S V RD G + CTGGLAC AQ+ ++H+ SRDA Sbjct: 424 GE---ATFSFPDRCPVCESAVERD-----GPMAF---CTGGLACPAQRERAIEHYASRDA 472 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +IEG+G++ + +E + PAD++ L + ++ + G+G S NL Sbjct: 473 LDIEGVGEKAVAKLLDAE----LVESPADLYDL------TVDELAALSGWGQRSAENLVA 522 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ R L F+ +LGI VG AR+LA+ + S++ + A D + Sbjct: 523 EVDASREPPLANFLVALGIHDVGTVTARNLAREFGSFEAIRE------AGAAGDTDAFEA 576 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 V VG ++A++I EF++ RN ++ LL V P E ++ + VFTG+L Sbjct: 577 VDDVGPVVAESICEFFRGERNEAVLDDLLDHVDPQPADTE--TGDALDGQTFVFTGSLAG 634 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 R +AQ+ V G ++ +S TD ++VGDNPG SK + A+ GV+ +++E F LL Sbjct: 635 YTRSEAQDLVEAHGGSATSSVSGNTDYLVVGDNPGQSKRDDAEAEGVETIDQESFEELL 693 >gi|254796855|ref|YP_003081692.1| DNA ligase, NAD-dependent [Neorickettsia risticii str. Illinois] gi|254590064|gb|ACT69426.1| DNA ligase, NAD-dependent [Neorickettsia risticii str. Illinois] Length = 670 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 257/710 (36%), Positives = 400/710 (56%), Gaps = 53/710 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A+KE+ L +++ H+ YYQ P I D+EYD++K R + A P L G Sbjct: 2 KAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKGRYLKLLEANPSL-------GFP 54 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 IG + KV H P LSL I++ E+L ++I R RF K N + F EPKID Sbjct: 55 VVIGYPASEKFQKVKHLSPMLSLRNIFSEEELVEYIERTKRFLNLK--NELEFLCEPKID 112 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + RY GK + A RGDG GE++ ++ I P + +++P+++EVRGEV++ Sbjct: 113 GVSFSARYINGKLLSCATRGDGKIGENIIDNMKVINGFP-IEIVDVPDLLEVRGEVFLDH 171 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG 253 + F L + ++NPRNAA+G LR+LNP +IT R L +F + + K I + Sbjct: 172 DTFQTL---------EGFSNPRNAAAGSLRQLNP-EITKERNLQYFAYSISKIDGI--EH 219 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q ++L + GF N ++ I+S+Y+ + RS + YDIDGLVYKV+ L Sbjct: 220 QEDVLHFLSERGFMTNPLRLASSKVPEIMSFYDSVYRGRSQIKYDIDGLVYKVNNLKLHA 279 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG + +PRW I+HKF + T L I + +GRTGI+TPVA L+P+ IGG +I+ A+L Sbjct: 280 RLGTLSDAPRWAIAHKFPSHRGKTILEKIKLSVGRTGIITPVAHLKPITIGGVVISRASL 339 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 +NED + +DIR GD V V+RAG+VIPKV+++ ++ R + + F FP Sbjct: 340 YNEDEL-----------ARKDIREGDLVTVERAGDVIPKVLEVDISYR-TNQERFIFPDK 387 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S ++R N AA RC C+ Q ++++KH VS AF+I+G+G + F Sbjct: 388 CPSCSSTLIRKNNE------AAIRCNNRKKCTEQVIQQIKHLVSAQAFDIDGIGTSHISF 441 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F + E I PADIF L + + +I+ G+G+ SV N+ SI K R ISLE+F Sbjct: 442 FIEKE----FISEPADIFCLDKHRD----EIKKYDGWGEKSVDNILTSIEKSRKISLEKF 493 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IFSLGI++VG + A LA+ + S+ N+ ++ +I+ + + + +G + ++++ Sbjct: 494 IFSLGIKNVGEKTAYMLAQQFKSFANWFDKM-SILKDDTQTENEIRNLDGMGSCVCESLL 552 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +F+ +P N V++L V I H ++ + KK VFTGTL I R +A+E V + Sbjct: 553 DFFSDPDNCNMVKSLSNHV--MITDHAISIGGPLSGKKFVFTGTLLSITREEAKEIVKKA 610 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 G +V +S++ D ++ G+ GSKL KA +LG+ I+ E+ + NT Sbjct: 611 GGIVLNSVSKQVDYVVAGEKAGSKLVKANELGIAIIEEKTLIEFTTGNNT 660 >gi|227551668|ref|ZP_03981717.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330] gi|293377659|ref|ZP_06623848.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1] gi|227179231|gb|EEI60203.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330] gi|292643659|gb|EFF61780.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1] Length = 679 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 246/714 (34%), Positives = 399/714 (55%), Gaps = 63/714 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 6 MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KVTH IP SL +++ E+L F R+ QK + + E Sbjct: 63 DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG GE+++ ++ + ++P + L P IEVRGE Sbjct: 119 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ + IT R L+ F++ + + Sbjct: 177 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGSM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + +Y E R LPY+IDG+V KV+EF Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V L+ + A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 405 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + D + AD++ L + + KI+ + S N+ +I+ ++ S Sbjct: 458 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSR----------SDYESIIALDTIGDIIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660 ++V ++ N V L+ E+ + E + V S + K +V TG L + Sbjct: 558 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTR 613 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + R +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q Sbjct: 614 LTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 667 >gi|261207462|ref|ZP_05922148.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6] gi|289565873|ref|ZP_06446314.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF] gi|294618097|ref|ZP_06697694.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679] gi|260078353|gb|EEW66058.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6] gi|289162333|gb|EFD10192.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF] gi|291595669|gb|EFF26965.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679] Length = 679 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 247/714 (34%), Positives = 398/714 (55%), Gaps = 63/714 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 6 MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KVTH IP SL +++ E+L F R+ QK + + E Sbjct: 63 DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG GE+++ ++ + ++P + L P IEVRGE Sbjct: 119 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ + IT R L+ F++ + + Sbjct: 177 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + SY E R LPY+IDG+V KV+EF Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 296 SLQDQLGFTVKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V L+ + A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 405 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + D + AD++ L + + KI+ + S N+ +I+ ++ S Sbjct: 458 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSK----------SDYESIIALDTIGDIIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660 ++V ++ N V L+ E+ + E + V S + K +V TG L + Sbjct: 558 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTR 613 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q Sbjct: 614 FTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 667 >gi|257895732|ref|ZP_05675385.1| NAD-dependent DNA ligase [Enterococcus faecium Com12] gi|257832297|gb|EEV58718.1| NAD-dependent DNA ligase [Enterococcus faecium Com12] Length = 678 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 246/714 (34%), Positives = 399/714 (55%), Gaps = 63/714 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 5 MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 61 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KVTH IP SL +++ E+L F R+ QK + + E Sbjct: 62 DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG GE+++ ++ + ++P + L P IEVRGE Sbjct: 118 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ + IT R L+ F++ + + Sbjct: 176 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGSM 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + +Y E R LPY+IDG+V KV+EF Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V L+ + A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 404 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 456 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + D + AD++ L + + KI+ + S N+ +I+ ++ S Sbjct: 457 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 506 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSR----------SDYESIIALDTIGDIIA 556 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660 ++V ++ N V L+ E+ + E + V S + K +V TG L + Sbjct: 557 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTR 612 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + R +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q Sbjct: 613 LTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 666 >gi|51893963|ref|YP_076654.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863] gi|81388077|sp|Q67KI8|DNLJ_SYMTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|51857652|dbj|BAD41810.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863] Length = 673 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 248/703 (35%), Positives = 383/703 (54%), Gaps = 47/703 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L + I +H+ YY ++P I D+ +D L + + AFPDL R P+ P Sbjct: 6 AERRIPELIETIRHHEYLYYVKNEPEISDAAFDELMQELKQLEEAFPDLRR---PDSPTQ 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG KV H P SL+ ++ DLR F R+ + + + E KIDG Sbjct: 63 RVGGATAPDFAKVPHQPPMYSLDNAFSEADLRDFDRRVR---EGLGGEPVSYVCELKIDG 119 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVYI 193 I++RYE G FV A RGDG +GEDV+ +R I +IP L +P + VRGEVY+ Sbjct: 120 LSISLRYEDGLFVQGATRGDGETGEDVTENLRTIGSIPLRLDGTEAPVPPRLIVRGEVYM 179 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252 +K LN + A G+ NPRNAA+G LR+ +P R L+ F++ + + Sbjct: 180 TKQVLEELNAALAAEGKPLLQNPRNAAAGGLRQKDPRKTRERRLDAFLYQVVDAEALGIA 239 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + LQ+++ F VN A+T ++ + ++ R LPY+IDGLV KV++ + Q Sbjct: 240 DHWSALQRLQAWRFKVNPHRHLAHTIDEVLDWVAGWQARRHELPYEIDGLVIKVNDLAQQ 299 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG ++ PRW I++KF ++ T ++ I +++GRTG++TP A L PV I G + AT Sbjct: 300 RRLGFTSKFPRWAIAYKFPAEERETTVVGISLEVGRTGVVTPSADLAPVRIAGTTVKRAT 359 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNEDYI+ +DIRVGD V+V++AGE+IP+VV ++ +R PDAQP++FP Sbjct: 360 LHNEDYIR-----------EKDIRVGDTVIVRKAGEIIPEVVRVVPEKRPPDAQPWTFPK 408 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + +VR G+ AA RCT L C AQQ + HF SRDA NIEGLG+ + Sbjct: 409 TCPACGAELVR----IEGE--AATRCTNNL-CPAQQYRAILHFASRDAMNIEGLGEALVQ 461 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 I AD++ L ++ + ++E + G+ SV NL +I+ R L R Sbjct: 462 SLLDH----GLIEDAADLYRLHEKRD-ALIRLERM---GEKSVDNLLAAIDATRQNPLHR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 IF+LGIRHVG AR LA ++ S + Q + L +P +G IA+++ Sbjct: 514 LIFALGIRHVGERAARLLADHFGSMEAIEQAGLD----------ELTAIPGLGPKIAESV 563 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 ++ +PR+ + L +G + + +V TGTL + R + +E + Sbjct: 564 KNYFASPRSHQLLAKLRAAGVNMVGEKKAGPAEGPLAGMTVVVTGTLVRWSRKEIEELIQ 623 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 QLG + +SRKT ++ G+ GSKL+KAQ+LG+ ++ E++F Sbjct: 624 QLGGKAAGSVSRKTSFVVAGEAAGSKLQKAQELGIPVLTEDEF 666 >gi|206967609|ref|ZP_03228565.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134] gi|228950848|ref|ZP_04112971.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068048|ref|ZP_04201356.1| DNA ligase [Bacillus cereus F65185] gi|229077651|ref|ZP_04210281.1| DNA ligase [Bacillus cereus Rock4-2] gi|229176884|ref|ZP_04304280.1| DNA ligase [Bacillus cereus 172560W] gi|206736529|gb|EDZ53676.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134] gi|228606557|gb|EEK63982.1| DNA ligase [Bacillus cereus 172560W] gi|228705592|gb|EEL57948.1| DNA ligase [Bacillus cereus Rock4-2] gi|228715056|gb|EEL66923.1| DNA ligase [Bacillus cereus F65185] gi|228808777|gb|EEM55273.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 669 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 394/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E +K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q D ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TISSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD++ L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|256617609|ref|ZP_05474455.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200] gi|257089149|ref|ZP_05583510.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188] gi|312904259|ref|ZP_07763421.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635] gi|256597136|gb|EEU16312.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200] gi|256997961|gb|EEU84481.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188] gi|310632355|gb|EFQ15638.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635] gi|315578805|gb|EFU90996.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0630] Length = 676 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 245/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMV 668 >gi|329767007|ref|ZP_08258535.1| DNA ligase [Gemella haemolysans M341] gi|328837732|gb|EGF87357.1| DNA ligase [Gemella haemolysans M341] Length = 663 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 249/711 (35%), Positives = 399/711 (56%), Gaps = 54/711 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++Q ++++S L ++ + YY P I D+EYD L ++ + + P+ N Sbjct: 1 MKQVQEKISKLVSLLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEENHPEYILE---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + K+TH +P LSL ++ EDLR F RI + D+S+ + E K Sbjct: 58 PTQRVGDRVLDEFEKITHKVPMLSLSNTFSTEDLRDFDARISKLVP---DHSVEYICELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+I+YE G+ V AA RGDG GEDV+ I+ I +IP+VL N EVRGEVY+ Sbjct: 115 IDGLAISIKYEDGRLVSAATRGDGSIGEDVTENIKTIFSIPKVLKDN--RTFEVRGEVYL 172 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251 + F LN E + +ANPRNAA+G LR+L+ + IT R L+ F++ + I + Sbjct: 173 PRKSFELLNSERESNNEVLFANPRNAAAGSLRQLD-SKITAKRRLSAFIYSIVGDDSIVS 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q L + PVN + ++ Y N + LPYDIDG+V KV+ +S Sbjct: 232 --QENALNTAKEYDLPVNPNFKLCKNIDEVIDYINYWTEHKKDLPYDIDGIVIKVNSYST 289 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+++G +SPRW ++KF E++ +T+LLD+++ +GRTGI+TPVA L+P+ I G+ ++ A Sbjct: 290 QEKVGYTQKSPRWATAYKFPEEELATKLLDVELSVGRTGIITPVAILDPIVISGSTVSKA 349 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN+D I+ L DI + D V+VK+AGE+IPKVV ++ R + + P Sbjct: 350 SLHNKDIIEEL-----------DIHIDDMVVVKKAGEIIPKVVRVVRELRTESSTKYVMP 398 Query: 432 SFCPIC-QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP C Q ++ +P T RC C Q + R+ HF SRDA NIEGLG + Sbjct: 399 NTCPSCGQQTYTKENDPFT-------RCKNP-DCPDQNIRRIIHFASRDALNIEGLGDKV 450 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++ A +I D+F+L+R + S ++ G+ S NL ++I + SL Sbjct: 451 VATLYEKGIIAHTI----DLFSLEREKLISLDRM------GEKSADNLLNAIENSKKSSL 500 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++ IF+LGI +VG + + LA+ YL+ N N L+ + VG I A+ Sbjct: 501 DKVIFALGILNVGKKAGKILAEKYLNLSNLM----------NATLDELVNLDDVGQITAE 550 Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +I+++ + NI + L+K ++P E N + K +V TG L ++ R++A+EY Sbjct: 551 SILDYLSDENNIKFINDLIKVGMNPQYEIQEVNTDNIFAGKTVVLTGKLVELTRNEAKEY 610 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + GA V+ ++ KTD++I G+ GSKL KA+QLG+K++NEE+F ++++ Sbjct: 611 LEKYGAKVTGSVTSKTDLVIAGEKAGSKLAKAEQLGIKVINEEEFANMVRE 661 >gi|329770498|ref|ZP_08261876.1| DNA ligase [Gemella sanguinis M325] gi|328836247|gb|EGF85916.1| DNA ligase [Gemella sanguinis M325] Length = 666 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 251/715 (35%), Positives = 414/715 (57%), Gaps = 62/715 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ ++E+ L + ++ + YY P I D+EYD L ++ + + +P+L + N Sbjct: 1 MKEIKEEIYKLVKLLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEKEYPELIQE---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + KVTH +P LSL ++ EDLR F RI + + I + E K Sbjct: 58 PTQRVGDVVLSEFEKVTHKVPMLSLSNTFSTEDLRDFDNRIKKVVANR---KIEYICELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+I Y GK + AA RGDG GE+V+ I+ I +IP+VL N + EVRGEVY+ Sbjct: 115 IDGLAISINYVNGKLISAATRGDGTVGEEVTDNIKTIFSIPKVLKDN--KTFEVRGEVYL 172 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251 K F LN+E +ANPRNAA+G LR+L+ + IT R L+ F++ + + I Sbjct: 173 PKKSFNILNEERKENNEVLFANPRNAAAGSLRQLD-SKITAQRRLSAFIYSVVGDNTI-- 229 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + Q + L+ PVNN + +++Y R LPY+IDG+V KV+ +SL Sbjct: 230 ESQLQALKTAEEYELPVNNNYKLCKNIDEVINYIEYWDINRKNLPYEIDGIVIKVNSYSL 289 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+++G +SPRW + KF E++ +T+LLD+++ +GRTGI+TPVA+L+P+ I G+ ++ A Sbjct: 290 QEEIGYTQKSPRWATAFKFPEEELATKLLDVELSVGRTGIVTPVAQLDPIVISGSTVSKA 349 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN+D I L DI +GD V+VK+AGE+IPKVV ++ R +++ + P Sbjct: 350 SLHNKDVIDEL-----------DIHIGDMVIVKKAGEIIPKVVRVLKELRLENSEKYIMP 398 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S +V + K + RC C Q + ++ HF SRDA NIEGLG + + Sbjct: 399 NRCPSCNSELV---SKKDDPFI---RCVNP-ECPEQNIRKIIHFASRDALNIEGLGDKVV 451 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 ++ + +I D+F+L+R K+ ++ G+ SV NL +I +N SL+ Sbjct: 452 ATLYEQGIISHTI----DLFSLERE------KLIDLDRMGEKSVDNLLKAIENSKNSSLD 501 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + I++LGI +VG + A+ LA+ YL+ + ++ D+ LI +P +G I A++ Sbjct: 502 KVIYALGILNVGKKAAKILAEKYLN-------LTTLMTATVDE---LINLPDIGLITAES 551 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHK 665 +++F N NI + L+ SIG + + +IE+ K +V TG L ++ R++ Sbjct: 552 VIDFLSNEINIKFINDLI-----SIGMNPQYKVQKIEDDNIFSGKTIVLTGKLVELTRNE 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+EY+ +LGA V+ ++ KTD+++ G+ GSKL KA+QLG+++++EE+F+ +L + Sbjct: 607 AKEYLEKLGAKVTGSVTTKTDLVLAGEKAGSKLAKAEQLGIQVISEEEFISMLGE 661 >gi|227517688|ref|ZP_03947737.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104] gi|257083650|ref|ZP_05578011.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1] gi|227074843|gb|EEI12806.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104] gi|256991680|gb|EEU78982.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1] gi|315146961|gb|EFT90977.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4244] Length = 676 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 245/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLSTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668 >gi|257884412|ref|ZP_05664065.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501] gi|257898303|ref|ZP_05677956.1| NAD-dependent DNA ligase [Enterococcus faecium Com15] gi|257820250|gb|EEV47398.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501] gi|257836215|gb|EEV61289.1| NAD-dependent DNA ligase [Enterococcus faecium Com15] Length = 678 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 246/714 (34%), Positives = 399/714 (55%), Gaps = 63/714 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 5 MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 61 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KVTH IP SL +++ E+L F R+ QK + + E Sbjct: 62 DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG GE+++ ++ + ++P + L P IEVRGE Sbjct: 118 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ + IT R L+ F++ + + Sbjct: 176 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + +Y E R LPY+IDG+V KV+EF Sbjct: 235 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 295 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V L+ + A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 404 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 456 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + D + AD++ L + + KI+ + S N+ +I+ ++ S Sbjct: 457 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 506 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSR----------SDYESIIALDTIGDIIA 556 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660 ++V ++ N V L+ E+ + E + V S + K +V TG L + Sbjct: 557 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTR 612 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + R +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q Sbjct: 613 LTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 666 >gi|328954073|ref|YP_004371407.1| DNA ligase [Desulfobacca acetoxidans DSM 11109] gi|328454397|gb|AEB10226.1| DNA ligase [Desulfobacca acetoxidans DSM 11109] Length = 676 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 399/712 (56%), Gaps = 51/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IE A + + L +I YHD YY P I D+EYD L R + + +P+L P Sbjct: 7 ITIEIAARA-ARLRDQIHYHDYRYYVLDDPEISDAEYDLLFRELERLEEEYPELV---TP 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG VTH P LSLE ++ ++++F R+ RF ++ + + LE Sbjct: 63 DSPTQRVGGGPAEKFESVTHRQPMLSLENAFSEGEVQEFEPRLKRFLHQQAE--FDYVLE 120 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188 PK+DG + + YE G A RGDGH GE+V+ +R I TIP VL + P +EVR Sbjct: 121 PKMDGVAVNLTYEDGLLAIGATRGDGHRGENVTQNLRTIKTIPLVLRRETTPAPAFLEVR 180 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVYI +F LN A G+ +ANPRNAA+G LR+L+P R L + +G+G+ + Sbjct: 181 GEVYIELAEFKKLNAAREAQGQPAFANPRNAAAGSLRQLDPAVTAGRPLKIYCYGIGEVA 240 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 +E++Q ++ G VN V + V+Y++ ++ +R LPY+IDG+V KVD Sbjct: 241 GREFSSHWEVMQTLKTWGLRVNPYVDRCQGIEAAVAYHHRLEGLRHGLPYEIDGVVIKVD 300 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +LG ++RSPRW +++KFA QA+T++ I +Q+GRTG +TP A + PV +GG Sbjct: 301 SLELQTRLGIKSRSPRWALAYKFAATQATTQVRKIIVQVGRTGAVTPTAIMAPVEVGGVT 360 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNED +V R +D+R GD VL++RAG+VIP+VV +I + R +P Sbjct: 361 VSRATLHNED---------EVAR--KDVREGDWVLIQRAGDVIPEVVKVITSRRTGREKP 409 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP+C + +VR A RC CSAQ ++HF S+ A +I+GLG Sbjct: 410 FKMPERCPVCDTPLVRPQGE------AVTRCPNP-DCSAQLKRAIRHFASKGAMDIDGLG 462 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ + D+ L R Q + +E F + S N+ +I + Sbjct: 463 EKIIEQLIDQG-------LVQDVADLYRLQASDLLPLER---FAEKSAQNIVQAIAGSKK 512 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL RFI++LGIR+VG A LA+++ Q +N + A +D L+ + +G Sbjct: 513 PSLGRFIYALGIRYVGEATANLLARHF-------QTLNALKAAAVED---LLLIEGIGPQ 562 Query: 608 IAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +A +I +++QNP+N + LL+ + P + +++ + + VFTG LQ++ R +A Sbjct: 563 VAASIRDYFQNPKNQALLAKLLQANLQPQAA--TQVLTTPLAGQTFVFTGRLQQLSRDEA 620 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + VT G VS+ +S KTD ++VG +PG+K +A +LG+ I++E F L+ Sbjct: 621 KALVTAQGGKVSSSVSAKTDYLVVGKDPGTKYAQALELGLTILDEAGFAQLI 672 >gi|293571852|ref|ZP_06682868.1| DNA ligase, NAD-dependent [Enterococcus faecium E980] gi|291608106|gb|EFF37412.1| DNA ligase, NAD-dependent [Enterococcus faecium E980] Length = 679 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 246/714 (34%), Positives = 399/714 (55%), Gaps = 63/714 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 6 MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KVTH IP SL +++ E+L F R+ QK + + E Sbjct: 63 DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG GE+++ ++ + ++P + L P IEVRGE Sbjct: 119 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ + IT R L+ F++ + + Sbjct: 177 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + +Y E R LPY+IDG+V KV+EF Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVMDKRPKDSEEYQ 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V L+ + A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 405 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + D + AD++ L + + KI+ + S N+ +I+ ++ S Sbjct: 458 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSR----------SDYESIIALDTIGDIIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660 ++V ++ N V L+ E+ + E + V S + K +V TG L + Sbjct: 558 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTR 613 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + R +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q Sbjct: 614 LTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 667 >gi|229188563|ref|ZP_04315602.1| DNA ligase [Bacillus cereus ATCC 10876] gi|228594752|gb|EEK52532.1| DNA ligase [Bacillus cereus ATCC 10876] Length = 669 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 394/712 (55%), Gaps = 56/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E +K + L ++ + Y+ P + D+EYD + + P+ SED Sbjct: 1 MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFM-SED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GG + L +F KVTH P LSL +N DLR F R+ Q D ++ + Sbjct: 59 -SPSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGANVRYIC 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E RGE Sbjct: 114 ELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL E Sbjct: 172 AYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEK 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ Sbjct: 232 TISSHGESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDV 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 292 ALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVR 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + + + Sbjct: 352 RASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYR 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 401 MPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGER 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F ++ IR AD++ L + Q + FG+ S TNL +I + S Sbjct: 454 VITQLFDAD----YIRTFADLYALTKEQLLQLER------FGEKSATNLIQAIENSKENS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVGA+ AR+ A+++ + + + N+ +G+ +A Sbjct: 504 LERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINE----------IGEKMA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQR 663 Q++V ++ N ++ + KE ++ +NV S K +V TG L+ + R Sbjct: 554 QSVVTYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLEVMGR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 613 SEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 664 >gi|116873191|ref|YP_849972.1| NAD-dependent DNA ligase LigA [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466434|sp|A0AJL1|DNLJ_LISW6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116742069|emb|CAK21193.1| DNA ligase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 670 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 258/711 (36%), Positives = 384/711 (54%), Gaps = 66/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P+ P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PDSPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N +DL F RI + K + I + E KIDG Sbjct: 62 GGEVLEGFTKVAHDTPMLSLANAFNRDDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K F Sbjct: 118 VSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIPMKLQKDFS--IEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ E Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVTTHSE 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N + +Y +E R+ L YDIDG+V K+++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNNLEEVYAYIDEWTEKRAELAYDIDGIVLKLNDLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CGSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L S K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 E----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N + ND +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKMADKETLTSIND----------IGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667 N V LL+E+ + G +++S E K +V TG L+K+ R+ A+ Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|225620892|ref|YP_002722150.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1] gi|254781267|sp|C0QVE5|DNLJ_BRAHW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225215712|gb|ACN84446.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1] Length = 663 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 245/708 (34%), Positives = 397/708 (56%), Gaps = 50/708 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IE+A++ + L + I+YH+ YY P I D EYD L R + + FP+L + Sbjct: 1 MNIEEAKQRIEQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKD--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P NK+GG + K H I SL + N E+ +F R+ + + + I +T+E Sbjct: 58 DSPTNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLEFDNRMQKELNQ---SKIKYTVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + + YEKGK A+ RGDG GE+V+ ++ + +P+ S+ + + VRGE Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMSNVPK--SIKEKKKLIVRGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 I+K DF ALN E + P+AN RNAASG LR+L+ + R L FF + + + Sbjct: 173 LITKKDFEALNKEREELEEIPFANARNAASGGLRQLDSAESKKRRLKFFAYQIANYKDFD 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +Y+ ++ + LGF V GV ++ Y +++ RS + Y+IDGLV KVD+ Sbjct: 233 LTNEYKSMEFLSELGFTVE-GVHPNIDAKKVLETYYDIQEKRSKMDYEIDGLVIKVDDVK 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG +R+PR+ ++ KF ++ T L +I++Q+GRTG LTPVA+LEPV +GG ++N Sbjct: 292 HQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 TLHN + IK +DIR+GD V+V R+G+VIPK+ +++ +R D++PF F Sbjct: 352 VTLHNPNEIK-----------SKDIRIGDTVVVIRSGDVIPKITRVVLEKRTADSKPFEF 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C D G ++ RC C ++ +++FVS+ A N+E +GK+ Sbjct: 401 PKKCPVCGG----DTAVTDGDVIV--RCINE-ECPSKITRYIEYFVSKPAMNMERIGKEW 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI-ENILGFGDVSVTNLYDSINKRRNIS 549 + F KS ++ PAD++ + R ++ E + G+ + +SI +N + Sbjct: 454 IAVFTKSG----LVKTPADLYKITRDDLFKFERMGEKLAGY-------MLESIENSKNTT 502 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L+RFI++LGIR VG A LAKY+ S +NF + DD L + +G+I A Sbjct: 503 LKRFIYALGIRQVGETTADLLAKYFTSIENFKK-------ATIDD---LQNIEGIGEISA 552 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++I +F N + + ++ LL + V S + K +V TG+++ R+ A+E Sbjct: 553 KSIYDFLHNEKTLKLIDDLLASGVNPVFEKVVTVESPLTGKNVVITGSIEGFTRNSAKEA 612 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +LGA V + +S+ T+I+IVG+ GSKL+KAQ LGV+IM ++F+ L Sbjct: 613 AERLGATVQSAVSKNTNILIVGEKAGSKLKKAQDLGVEIMEADEFIKL 660 >gi|330813743|ref|YP_004357982.1| DNA ligase [Candidatus Pelagibacter sp. IMCC9063] gi|327486838|gb|AEA81243.1| DNA ligase [Candidatus Pelagibacter sp. IMCC9063] Length = 672 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 249/722 (34%), Positives = 405/722 (56%), Gaps = 67/722 (9%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 SI+ +K+L L Q +D YY+ P I D EYD +K++ Sbjct: 4 SIDDYKKKLKLLNQ----YDHNYYETDSPKITDGEYDEIKKKLLEFEKKNSQYKFVS--- 56 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 NK+G + KV H+ LSL ++IED+ F +I + + I EP Sbjct: 57 ---NKVGFAPSKKFSKVKHTEKMLSLGNAFSIEDMNGFYKKIKNYLNYEAGQDIILVAEP 113 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR-VLSLNIPEIIEVRGEV 191 KIDG ++ Y+ G V RGDG GE+++ + IP IP+ ++ N P+++E+RGEV Sbjct: 114 KIDGISASLLYQNGILVQGLSRGDGEYGEEITENLMTIPDIPKKIIYKNFPKLMEIRGEV 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 YI K DF + + +ANPRNAA G LR+ + L FF + +++ Sbjct: 174 YIGKKDFKNIENN--------FANPRNAAGGSLRQKDFKKTAAIPLKFFAYSTIQSNYSH 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + QYE L+ ++ F N R + YN+++ +RS L YDIDG+VYK+++ + Sbjct: 226 FQSQYEFLEFLKYSNFKTNPLSRIIKNIKELEKNYNDLEQLRSGLDYDIDGIVYKINDLN 285 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQK+LG + SPRW I+HKF+ ++A T++ DI+IQ+GRTG LTPVA+++P+N+GG +++N Sbjct: 286 LQKRLGNLSNSPRWAIAHKFSAEKAFTKINDIEIQVGRTGALTPVAKVDPINVGGVMVSN 345 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED +++R +DIR+GD V ++RAG+VIP+VV + +++R + ++F Sbjct: 346 ATLHNED---------EIIR--KDIRIGDTVCIQRAGDVIPQVVYVDLSKRGRKTEAYNF 394 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + +++ N + K+ A RC G CS E+LKH +S+DA NI+G GK+ Sbjct: 395 PAKCP-CGNDTIKEYNEISKKIDAVRRCPDVGYECSYMAKEKLKHLISKDALNIDGFGKK 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F+ + I++P+DIF L + I+ + G+G++S NL SI K + +S Sbjct: 454 VVDNFWNLK----LIKVPSDIFKLDYKA------IKELEGWGELSCNNLIKSIEKSKTLS 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ---------EINNIIAHNNDDWLSLIR 600 L +FI+++GIRH+G E A+ LA Y+ S F + E+NN LI Sbjct: 504 LTKFIYAIGIRHIGQENAKILASYFKSITKFKKLFAPSLIKAELNN-----------LIE 552 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G+ +A+ F+ N +NI + L++ + I E S NK L+FTG K Sbjct: 553 IDGIGETQIKALEIFFSNKKNIKVINDLVECL--QISNFENITSGIFTNKTLMFTGGFSK 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A+ G V +S+K + ++VGD+ +K++KA+ L V+I++E+++ LL Sbjct: 611 MSRSEAKTLAESQGGKVLGSISKKLNYLVVGDSKPTNNKVQKAKDLQVEIISEKKWHELL 670 Query: 719 QQ 720 ++ Sbjct: 671 KR 672 >gi|303327018|ref|ZP_07357460.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3] gi|302863006|gb|EFL85938.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3] Length = 711 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 262/730 (35%), Positives = 386/730 (52%), Gaps = 65/730 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q R+ L E+ H+ Y+ P I D +YDAL R + +P L P+ P Sbjct: 22 QERERARRLSAELERHNYLYHTLDAPEISDEQYDALFRELTELEERWPGL---RSPHSPT 78 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI--FFTLEPK 133 ++GG + L K H L+ +++ ED R F+ R+ R W + + + F +PK Sbjct: 79 LRVGGRLLDGLAKKAHRRRMYGLDNVFSDEDWRDFVERMQRAWDAELNGPLPLGFWCDPK 138 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEV 191 +DG + I YE G + A RGDG GE V+ +R I T+P L P +EVRGEV Sbjct: 139 LDGLALEIIYENGLLIEALTRGDGEIGEVVTEAVRTIRTVPLRLRGEGPFPARLEVRGEV 198 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIF 250 + K DF ALN + A+GRK +ANPRNAA+G LR+L+ +R L F + LG+ Sbjct: 199 VMFKKDFEALNAQQEALGRKTFANPRNAAAGTLRQLDISVTESRPLRFLAYSLGEADWAP 258 Query: 251 AKG---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 AK Q+E++ ++ GF R + +Y ++ R P +IDG V K D Sbjct: 259 AKPCLFQHELMARLTAYGFLTPPDGRLCAGADEVEAYAAWVREHRQDFPMEIDGAVAKED 318 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q+ LG AR+PR+ ++ KF QA TRL IDIQ+GRTG+LTPVA LEPV +GG + Sbjct: 319 NLEAQEALGFTARAPRFAVAFKFPAMQAETRLTGIDIQVGRTGVLTPVAVLEPVPVGGVM 378 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNED I+ RD+RVGD V+V+RAG+VIP+VV +++ R PDA Sbjct: 379 VSRATLHNEDEIR-----------ARDVRVGDTVIVQRAGDVIPEVVGPVLSRRPPDAVE 427 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP C V R+ AA RC L+C A +L + HFVS+ +I+G+G Sbjct: 428 FVFPHTCPACGEAVHREPGE------AAWRCD-NLSCPAVRLRAISHFVSKAGLDIQGVG 480 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINK 544 ++ + S ++ PAD+FTL K E +L F G+V D++++ Sbjct: 481 QKWIAQLVTSG----RVQSPADLFTL---------KAEELLDFERMGEVLARKFVDALDE 527 Query: 545 RRNI-SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R+ +L R I +LGIRHVG + AR LA ++ + + D +L +P Sbjct: 528 ARHTATLPRLISALGIRHVGEQTARLLAGHFRDLDDLGRA----------DAETLQALPD 577 Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVS----SEIENKKLVFT 655 VG +A +I FY++P N +E L +SP + + ++ K ++FT Sbjct: 578 VGPEVAASIRNFYESPANRAQLERFREMGLWPLSPLADANSAETAQTQVGPLQGKNILFT 637 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL +QR KAQ GA+ + +++K D ++VGD PGSKL+KA+ LG+ +++E F Sbjct: 638 GTL-SLQRGKAQHLAEAAGAIPAGSVNKKLDFLVVGDKPGSKLDKARTLGIAVLDEAGFR 696 Query: 716 FLLQQYNTTL 725 LL L Sbjct: 697 ELLAASGIPL 706 >gi|254283004|ref|ZP_04957972.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B] gi|219679207|gb|EED35556.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B] Length = 675 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 245/714 (34%), Positives = 383/714 (53%), Gaps = 61/714 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E++ L + I YYQ P + D++YDA RR + A P+LA P+ P ++G Sbjct: 8 EVAELRERIKRWALEYYQQDAPSVPDADYDAAFRRLHELESAHPELA---SPDSPTRRVG 64 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH +P LSL+ ++ +D F R+ ++ N+I + EPK+DG + Sbjct: 65 AQPIAGFEQVTHRLPMLSLDNAFSSDDFDAFDQRVS---ERLGKNAIDYCCEPKLDGIAV 121 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198 ++ YE+GK AA RGDG GED++ +R I IP L P+++EVRGEV++ + F Sbjct: 122 SLIYERGKLTQAATRGDGVVGEDITHNVRTIEAIPLALEGGGFPDVLEVRGEVFMPRVGF 181 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE- 256 LND A G K + NPRNAA+G LR+L+P R L+F + +G F GQ Sbjct: 182 ERLNDRARASGDKLFVNPRNAAAGSLRQLDPRVTARRPLDFCCYSVG-----FCSGQIRD 236 Query: 257 -------MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ ++ G PV+ ++ A +YY + R LP+DIDG+V+KVD+ Sbjct: 237 LGDRHSAVIARLGEWGLPVSQWMKVATAAEACEAYYQWLAGERDGLPFDIDGIVFKVDDL 296 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+ LG +R+PRW I+ KF ++ TR+LD++ Q+GRTG +TPVARL+PV +GG ++ Sbjct: 297 ESQRILGFVSRAPRWAIARKFPAQEQRTRVLDVEFQVGRTGAITPVARLDPVFVGGVTVS 356 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L + +GD V+++RAG+VIP+VV +I+ ER + Sbjct: 357 NATLHNADEIERL-----------GLCIGDSVIIRRAGDVIPQVVAVILEERDESVRAVV 405 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP C S V R G+ AA RC GGL C AQ+ L+HF SR A +I+GLG++ Sbjct: 406 FPDHCPACGSEVER----VEGE--AAFRCVGGLICPAQRRASLQHFASRKAMDIDGLGEK 459 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ E + DI L + ++ + G+ S NL +++K + + Sbjct: 460 VIEQLVARE-------LITDIAGLYGLDLETLVSLDRM---GEKSAENLVAALDKSKATT 509 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI++LGIR VG AR+LA ++ S ++ +D VG ++A Sbjct: 510 LARFIYALGIREVGESTARALAMHFGSLDAIEGAGQEVLEEVDD----------VGPVVA 559 Query: 610 QAIVEFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I F+ N +EAL++ + + + V +G L+ + R +A Sbjct: 560 THIRNFFSEAANRRTIEALIEAGVHWPDPVDSMAAGEEGALAGESWVVSGKLESMSRDQA 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S KT ++ G GSKL+KA+ LG+ +++E FL LL++ Sbjct: 620 SDRLRSLGARVTGGVSNKTTRLLAGPGAGSKLKKAESLGLPVLDESDFLALLEE 673 >gi|69246831|ref|ZP_00604140.1| NAD-dependent DNA ligase [Enterococcus faecium DO] gi|260560049|ref|ZP_05832227.1| NAD-dependent DNA ligase [Enterococcus faecium C68] gi|293559999|ref|ZP_06676507.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162] gi|294621040|ref|ZP_06700232.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317] gi|314937827|ref|ZP_07845144.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04] gi|314941627|ref|ZP_07848507.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C] gi|314948874|ref|ZP_07852243.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082] gi|314951008|ref|ZP_07854075.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A] gi|314993009|ref|ZP_07858405.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B] gi|314996456|ref|ZP_07861499.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01] gi|68195064|gb|EAN09526.1| NAD-dependent DNA ligase [Enterococcus faecium DO] gi|260073884|gb|EEW62208.1| NAD-dependent DNA ligase [Enterococcus faecium C68] gi|291599354|gb|EFF30379.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317] gi|291606087|gb|EFF35513.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162] gi|313589438|gb|EFR68283.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01] gi|313592532|gb|EFR71377.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B] gi|313596863|gb|EFR75708.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A] gi|313599518|gb|EFR78361.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C] gi|313642858|gb|EFS07438.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04] gi|313644664|gb|EFS09244.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082] Length = 679 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 247/714 (34%), Positives = 398/714 (55%), Gaps = 63/714 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 6 MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KVTH IP SL +++ E+L F R+ QK + + E Sbjct: 63 DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG GE+++ ++ + ++P + L P IEVRGE Sbjct: 119 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ + IT R L+ F++ + + Sbjct: 177 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + SY E R LPY+IDG+V KV+EF Sbjct: 236 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 296 SLQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V L+ + A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 405 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + D + AD++ L + + KI+ + S N+ +I+ ++ S Sbjct: 458 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSK----------SDYESIIALDTIGDIIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660 ++V ++ N V L+ E+ + E + V S + K +V TG L + Sbjct: 558 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTR 613 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q Sbjct: 614 FTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 667 >gi|300861866|ref|ZP_07107946.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11] gi|300848391|gb|EFK76148.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11] Length = 676 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 246/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + SY E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668 >gi|315161924|gb|EFU05941.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0645] Length = 676 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 246/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + SY E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 295 FALQDELGFTLKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668 >gi|257878462|ref|ZP_05658115.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933] gi|257889341|ref|ZP_05668994.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410] gi|257894353|ref|ZP_05674006.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408] gi|258616016|ref|ZP_05713786.1| DNA ligase, NAD-dependent [Enterococcus faecium DO] gi|257812690|gb|EEV41448.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933] gi|257825701|gb|EEV52327.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410] gi|257830732|gb|EEV57339.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408] Length = 678 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 247/714 (34%), Positives = 398/714 (55%), Gaps = 63/714 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 5 MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 61 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KVTH IP SL +++ E+L F R+ QK + + E Sbjct: 62 DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG GE+++ ++ + ++P + L P IEVRGE Sbjct: 118 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ + IT R L+ F++ + + Sbjct: 176 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + SY E R LPY+IDG+V KV+EF Sbjct: 235 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 295 SLQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 355 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V L+ + A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 404 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 456 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + D + AD++ L + + KI+ + S N+ +I+ ++ S Sbjct: 457 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 506 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 507 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSK----------SDYESIIALDTIGDIIA 556 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660 ++V ++ N V L+ E+ + E + V S + K +V TG L + Sbjct: 557 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTR 612 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q Sbjct: 613 FTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 666 >gi|257882881|ref|ZP_05662534.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502] gi|257818539|gb|EEV45867.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502] Length = 674 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 247/714 (34%), Positives = 398/714 (55%), Gaps = 63/714 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 1 MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KVTH IP SL +++ E+L F R+ QK + + E Sbjct: 58 DSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG GE+++ ++ + ++P + L P IEVRGE Sbjct: 114 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ + IT R L+ F++ + + Sbjct: 172 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 230 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + SY E R LPY+IDG+V KV+EF Sbjct: 231 QAKTQYDALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEF 290 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 291 SLQDQLGFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 350 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 351 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V L+ + A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 400 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 452 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + D + AD++ L + + KI+ + S N+ +I+ ++ S Sbjct: 453 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 502 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 503 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSK----------SDYESIIALDTIGDIIA 552 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660 ++V ++ N V L+ E+ + E + V S + K +V TG L + Sbjct: 553 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRNAQLQEVESPFKEKTVVLTGKLTR 608 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q Sbjct: 609 FTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 662 >gi|229083590|ref|ZP_04215919.1| DNA ligase [Bacillus cereus Rock3-44] gi|228699722|gb|EEL52378.1| DNA ligase [Bacillus cereus Rock3-44] Length = 669 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/715 (35%), Positives = 402/715 (56%), Gaps = 62/715 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +S E+A++ + L ++ C YQY P + D+EYD + + P+ + Sbjct: 1 MSKEKAKQRIEELRDMLNA---CNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFL-T 56 Query: 69 EDPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ED P ++GG + L +F KVTH P LSL +N DLR F R+ Q D ++ Sbjct: 57 ED--SPTVRVGGAV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDSANVR 110 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + E KIDG +++ YEKG+FV A RGDG +GED++ ++ I IP L L +E Sbjct: 111 YICELKIDGLAVSLHYEKGRFVQGATRGDGVTGEDITQNLKTIKAIP--LRLKEEVTLEA 168 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGE Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL Sbjct: 169 RGEAYMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLADV 228 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E + L + LGF N R T +++Y E + R L Y+IDG+V KV Sbjct: 229 EEKTIVSHSDSLNFLGELGFKTNPNRRTCETIEDVITYVEEWQEKRPDLDYEIDGIVIKV 288 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G Sbjct: 289 DDVALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGT 348 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ A+LHNED I+ +DIR+GD V+VK+AG++IP+VV+++ ++R + + Sbjct: 349 IVRRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEE 397 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + P+ CP C S +VR L + A RC AC AQ E L HFVSR+A NI+GL Sbjct: 398 EYHMPTHCPTCDSELVR-LEEEV-----ALRCINP-ACPAQIREGLIHFVSRNAMNIDGL 450 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ + F+++ IR AD++ L + Q + FG+ S + L +I + Sbjct: 451 GERVITQLFEAD----YIRTFADLYPLTQEQLLQLER------FGEKSASKLVQAIEASK 500 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 SLER +F LGIRHVGA+ AR+LA+++ E +++ ++ L I +G+ Sbjct: 501 ENSLERLLFGLGIRHVGAKAARTLAEHF--------ETMDLLVKATEEELKEINE--IGE 550 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVS-----PSIGRHE-KNVSSEIENKKLVFTGTLQK 660 +AQ+IV ++ N ++ + KE I R + +NV S K +V TG L+ Sbjct: 551 KMAQSIVTYFDN-EDVLELLQQFKEYGVNMTYKGIKRADLQNVESYFAGKTIVLTGKLEV 609 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R +A++ + +LG V+ +S+ TD+++ G+ GSKL +A++ +++ NEE+FL Sbjct: 610 MGRSEAKKKIEELGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNIEVWNEERFL 664 >gi|195953269|ref|YP_002121559.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1] gi|254781349|sp|B4U8X0|DNLJ_HYDS0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|195932881|gb|ACG57581.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1] Length = 700 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 257/723 (35%), Positives = 410/723 (56%), Gaps = 68/723 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS E+A K +++L + I+YHD YY ++P+I D+EYDA+ + +I +PDL P Sbjct: 28 LSKEEAIKIINTLRELINYHDYRYYVLNQPVISDAEYDAIYKFLKSIEDNYPDLIT---P 84 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++ +++ + +V H P LSL+ +N +DLR F R+ K+ I + +E Sbjct: 85 DSLTQRVSSDISSTFPQVKHLAPMLSLDNTYNEDDLRDFDRRVKELSGKE---HIEYCVE 141 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE----IIEV 187 PK DG I++ YE FV A RGDG GEDV+ ++ I TIP L N + ++E+ Sbjct: 142 PKYDGAGISLLYENDLFVRGATRGDGEVGEDVTKNLKTIKTIP--LRANFSKQGIRLLEI 199 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-- 244 RGEV I+K+DF +N+E +A PYANPRN A+G +R +P ++ R L V+ + Sbjct: 200 RGEVIINKDDFKKINEERMAENLPPYANPRNLAAGSIRLQDPQEVVKRPLTALVYQITYV 259 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + + K Y ++ + LGF ++ ++ Y +S R +LPY+IDG+V Sbjct: 260 EPTNNMPKTHYGAIKMLHDLGFKTPFLDMKLCKNIQEVIDYCRYFESKRESLPYEIDGMV 319 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++ SL +LG + +PRW + KF KQA+T +LD+ +GR G +TPVA+LEPV++ Sbjct: 320 IKVNDISLYDELGFTSHAPRWATAFKFKAKQATTIILDVIFSVGRVGNITPVAKLEPVSL 379 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG I++ +L NED+I+ +DI + D V+++RAGEVIP VV ++ R Sbjct: 380 GGVTISSVSLFNEDFIR-----------EKDIHIKDTVIIERAGEVIPYVVSVVKEARPK 428 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA+P FP +CP C S++V+ G++ A RC ++C AQ + R++HF S+DA +I Sbjct: 429 DAKPIVFPKYCPSCGSKLVK----APGEV--AWRCI-NISCPAQVVLRIRHFASKDAMDI 481 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG+ + ++ ++ ADI+ L+ + + + F S NL D+I Sbjct: 482 KGLGEAVAQLLYDAK----LVKNIADIYYLK------FSDLVRLPRFAKKSAQNLIDAIE 531 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + L R ++ LGIR+VG A+ LA YY ++I NI+ + +D L + Sbjct: 532 ASKRRGLARVLYGLGIRYVGLTTAKKLASYY-------KDIWNIVKASEED---LRNIED 581 Query: 604 VGDIIAQAIVEFYQNPRNICAVE------ALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 +GDI+A++I EF+ +NI ++ LLKEVS + VS+++ + VFTGT Sbjct: 582 IGDIVARSIKEFFGLEQNINTIKRLEEAGVLLKEVSEA-------VSNKLAGLQFVFTGT 634 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716 L R A++ V LGA S ++ T ++VG +PG +KL KA LG+K ++EE+FL Sbjct: 635 LSCCTREVARQMVESLGATTSDSVTHHTSYLVVGQDPGATKLRKANMLGIKTISEEEFLR 694 Query: 717 LLQ 719 LL+ Sbjct: 695 LLE 697 >gi|255973805|ref|ZP_05424391.1| NAD-dependent DNA ligase [Enterococcus faecalis T2] gi|256964440|ref|ZP_05568611.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704] gi|257080988|ref|ZP_05575349.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol] gi|307272536|ref|ZP_07553789.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855] gi|307284516|ref|ZP_07564678.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860] gi|255966677|gb|EET97299.1| NAD-dependent DNA ligase [Enterococcus faecalis T2] gi|256954936|gb|EEU71568.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704] gi|256989018|gb|EEU76320.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol] gi|306503193|gb|EFM72447.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860] gi|306510821|gb|EFM79838.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855] gi|315151576|gb|EFT95592.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0012] gi|315170712|gb|EFU14729.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1342] gi|327534312|gb|AEA93146.1| NAD-dependent DNA ligase LigA [Enterococcus faecalis OG1RF] Length = 676 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 245/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668 >gi|29375318|ref|NP_814472.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583] gi|227554838|ref|ZP_03984885.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22] gi|256761492|ref|ZP_05502072.1| NAD-dependent DNA ligase [Enterococcus faecalis T3] gi|257415292|ref|ZP_05592286.1| NAD-dependent DNA ligase [Enterococcus faecalis AR01/DG] gi|257418334|ref|ZP_05595328.1| NAD-dependent DNA ligase [Enterococcus faecalis T11] gi|81437298|sp|Q837V6|DNLJ_ENTFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29342778|gb|AAO80542.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583] gi|227176007|gb|EEI56979.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22] gi|256682743|gb|EEU22438.1| NAD-dependent DNA ligase [Enterococcus faecalis T3] gi|257157120|gb|EEU87080.1| NAD-dependent DNA ligase [Enterococcus faecalis ARO1/DG] gi|257160162|gb|EEU90122.1| NAD-dependent DNA ligase [Enterococcus faecalis T11] gi|315031451|gb|EFT43383.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0017] gi|315166929|gb|EFU10946.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1341] gi|315575350|gb|EFU87541.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309B] gi|315581380|gb|EFU93571.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309A] Length = 676 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 245/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLAQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668 >gi|256957407|ref|ZP_05561578.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5] gi|257077597|ref|ZP_05571958.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1] gi|294779927|ref|ZP_06745308.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1] gi|256947903|gb|EEU64535.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5] gi|256985627|gb|EEU72929.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1] gi|294452976|gb|EFG21397.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1] gi|295114065|emb|CBL32702.1| DNA ligase, NAD-dependent [Enterococcus sp. 7L76] gi|315036101|gb|EFT48033.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0027] gi|315172192|gb|EFU16209.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1346] Length = 676 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 245/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMV 668 >gi|258422981|ref|ZP_05685880.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9635] gi|257846768|gb|EEV70783.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9635] Length = 667 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 253/702 (36%), Positives = 386/702 (54%), Gaps = 58/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +DLRKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y G FV RGDG +GED++ ++ I IP L + P +EVRGE Y+ + FL Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E L Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q ++G Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I R DA + P+ CP C Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++SE Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L ++ G V NL +I + ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + ++ LA+ Y + I+ ++ + L+ + +GD +AQ++V + +N Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558 Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +I A+ LK+ + I + E K +V TG L K+ R++A +++T Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHKMTRNEASKWLTSQ 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659 >gi|77919807|ref|YP_357622.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380] gi|123756590|sp|Q3A2F5|DNLJ_PELCD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77545890|gb|ABA89452.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380] Length = 671 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 248/697 (35%), Positives = 381/697 (54%), Gaps = 52/697 (7%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 E+ H YY Y +P I D+EYD L R + A+P+L + P+ ++G Sbjct: 16 ELHRHSRLYYTYDRPEITDAEYDRLFRELLELEKAYPELVTAASPS---LRVGASPLSQF 72 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 V HS P LSLE ++L F RI + D + + E K+DG + + Y G Sbjct: 73 TPVPHSRPMLSLENALTEDELYDFDARIRKLL--ASDAPVRYVCELKMDGVAVELVYRDG 130 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 + RGDG +GE ++ +R IP+IP VLS P ++EVRGEVYI +DF LN E Sbjct: 131 ILSVGSTRGDGTTGEGITENLRTIPSIPLVLSGEAPALLEVRGEVYIDLDDFQKLNHERE 190 Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 G + +ANPRNAA+G LR+L+ R L F +G+G+ S + +L+ M G Sbjct: 191 EEGLQVFANPRNAAAGSLRQLDSAVTAKRPLKIFCYGIGQLSGEHPASHHSLLKCMHRWG 250 Query: 266 FPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 VN + + T GI Y+ +++ R LPY+IDG+V KVD+ +LQ++LGE+ R+P Sbjct: 251 LRVN--LEHSRTLEGIEQVTDYFRQLQQRRDELPYEIDGMVVKVDDLALQRELGEKTRTP 308 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 RW I+ KF +QA T + DI +Q+GRTG +TPVA+L+PV + G ++ A+LHN D I L Sbjct: 309 RWAIACKFPPRQAVTVVEDIVLQVGRTGAITPVAQLKPVEVSGVTVSRASLHNWDEIARL 368 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 D+ +GD V+V+RAG+VIP VV ++ R+ + P CP C VV Sbjct: 369 -----------DVLIGDTVVVERAGDVIPDVVKVLTEHRNGQERSVPLPQSCPACGGPVV 417 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 + G++V RC ++C A+ E +KHFV+R A +I+GLG++ ++ K E Sbjct: 418 K----LEGEVVP--RCQ-EMSCPARLRESIKHFVARRAMDIDGLGERTIEQLLKRE---- 466 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 I+ AD++ L + ++ D S L +I + L RF+F+LGIRHV Sbjct: 467 LIKSVADLYHLTKEDLLLCERL------ADKSAEKLLTAIAASKTRPLGRFLFALGIRHV 520 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G +A LA+ + S + ++H + L+ + +G +A ++ +F+ RN Sbjct: 521 GEHLASLLARQFGSL--------DALSHATRE--ELLAIHEIGPQVADSVTDFFAKSRNR 570 Query: 623 CAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 + AL + V+P EK + K VFTG+L + R +AQE V +LG S + Sbjct: 571 EILAALQRAGVAPQA--EEKRSGGPLTGKSFVFTGSLTRFSRKQAQEMVERLGGRASGSV 628 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S+KTD ++ G+ GSKLEKA+QL ++I++EE+FL ++ Sbjct: 629 SKKTDCVVAGEAAGSKLEKARQLNIQILSEEEFLQMI 665 >gi|78043193|ref|YP_359946.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans Z-2901] gi|123743192|sp|Q3AD38|DNLJ_CARHZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77995308|gb|ABB14207.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans Z-2901] Length = 664 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/705 (36%), Positives = 393/705 (55%), Gaps = 55/705 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E +K + L + YH+ YY +P I D+EYD + R ++ +P+ P+ P Sbjct: 4 EAVKKRIEELRALLHYHNYRYYVLDQPEISDAEYDRMLRELISLEQQYPEFI---TPDSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE+ +V H P SL+ + EDL++F R+ ++ + + +E KI Sbjct: 61 SQRVGGEVAKEFREVAHLKPMYSLDNAFGPEDLKEFDRRVRSLLPGQE---VEYEVELKI 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I++ YE G V A RG+G +GED++A ++ I IP L IP ++EVRGE Y+ Sbjct: 118 DGLAISLVYENGVLVRGATRGNGTTGEDITANVKTIKAIPLKLRNPIP-LLEVRGEAYMP 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K F LN++ G +ANPRNAA+G LR+L+P R L+ F++ +G+ K Sbjct: 177 KESFARLNEQREERGEPLFANPRNAAAGSLRQLDPKVTAERDLSAFMYAIGEVQGYEPKT 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q E+++ + LGF VN N +++Y R +LPY IDGLV KV+ + Q+ Sbjct: 237 QAELMEWLSELGFKVNPYREVFNNIDDVINYCQSWHEKRFSLPYVIDGLVIKVNSLAQQE 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG A+SPRW I++KF + A TRL DI +++GRTG+LTP A EPV++ G +T A+L Sbjct: 297 ALGFTAKSPRWAIAYKFPAEIAETRLKDIIVRVGRTGVLTPTAIFEPVSLAGTTVTRASL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNEDYI+ +DIR+GD + V++AGE+IP+VV+++ +R + F P Sbjct: 357 HNEDYIR-----------EKDIRIGDIIRVQKAGEIIPEVVEVVKEKRTGAEKEFVMPDT 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+CQ + VR G+ AA RCT +C AQ E + HF SR A NIEGLG + Sbjct: 406 CPVCQGKAVR----LPGE--AAWRCTNA-SCPAQLKEGIVHFASRGAMNIEGLGPAVAEL 458 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + A I AD++ L S ++ + G S NL ++I K + SLER Sbjct: 459 LLE----AGLIHNYADLYYL------SAEEVARLPRMGKKSAENLINAIEKSKQNSLERL 508 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+ LGIR VG + AR LA ++ +E++ +IA ++ ++ +P VG +A +I Sbjct: 509 IYGLGIRLVGEKAARDLAVHF-------KELDKLIAAGEEEIMA---IPSVGPKMAASIK 558 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVS----SEIENKKLVFTGTLQKIQRHKAQEY 669 F+ N+ +E L + G + K ++ + +E V TGTL R +A++ Sbjct: 559 AFFAQKENLELIEKL-----KAAGVNTKYLAEVRDNRLEGLTFVLTGTLSSFTRKEAEQL 613 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + LG VS+ +S+KT ++VG++PGSKL KA++LG+ I+ EE+F Sbjct: 614 ILSLGGKVSSSVSKKTSYVVVGEDPGSKLTKAKELGIPILTEEEF 658 >gi|327475237|gb|AEA77213.1| DNA ligase [Bacillus aquimaris] Length = 668 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/713 (35%), Positives = 399/713 (55%), Gaps = 64/713 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S E+ KEL + + +Y Y+ KP + DSEYD L R + FPDL S+ P+ Sbjct: 5 SAEKRVKELHDVLNQYNYE---YHVLDKPSVPDSEYDQLLRELIELEDQFPDLKTSDSPS 61 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++GG + S KV H P LSL +N EDLR F R+ + DD S + E Sbjct: 62 ---ERVGGSILESFEKVEHRTPMLSLGNAFNEEDLRDFDRRVRQ--SVGDDFS--YVCEL 114 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +++RYE G FV A RGDG GED+++ ++ I +IP L ++ P EVRGE + Sbjct: 115 KIDGLAVSLRYEDGVFVQGATRGDGTIGEDITSNLKTIRSIP--LKISEPISFEVRGEAF 172 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + K F ALN +P+ANPRNAA+G LR+L+P +R L+ F++ L + Sbjct: 173 MPKGSFEALNKVKEEKEEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYALADVGDTGI 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + E L ++ LGF N R+ T ++ + R LPYDIDG+V KVD Sbjct: 233 ESHSEGLDRLERLGFKTNQERRRCATIEEVIEFVEGWTDKRPNLPYDIDGIVIKVDALQQ 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG A+SPRW I+ KF ++ T L DI++ IGRTG+LTP A L+PV + G + A Sbjct: 293 QQQLGTTAKSPRWAIAFKFPAEEVVTVLKDIELSIGRTGVLTPTAILDPVRVAGTTVQRA 352 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED I+ +DI++GD V++K+AG++IP+VV+++ ++R + Q F P Sbjct: 353 SLHNEDLIR-----------EKDIKIGDHVVIKKAGDIIPEVVNVLEDKRTGEEQEFKMP 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 402 THCPECDSELVR----LEGEV--ALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEKVI 454 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F+ + I AD++ L+R Q ++ G+ SV NL ++I + SLE Sbjct: 455 SQLFREK----LIEDVADLYRLEREQLLQLERM------GEKSVDNLLEAIEASKENSLE 504 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LG+RHVGA+ A++LA+ + S + ++ + D+ L + +G+ +A A Sbjct: 505 KLLFGLGVRHVGAKAAKTLAQQFHSME-------KLMTVSKDE---LTDINEIGEKMAAA 554 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQKIQ 662 IV ++ N V+ L++E+ + E V S K +V TG ++ + Sbjct: 555 IVAYFDNEE----VKELIEELKEAGVNLEYKGPKPVKVSEVDSYFAGKTVVLTGKIEVLS 610 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R++A++ + LG V+ +S+KTD++I G++ GSKL KA +L +++ +E++ + Sbjct: 611 RNEAKDKIEMLGGKVTGSVSKKTDLVIAGEDAGSKLAKANELNIEVWDEDKLM 663 >gi|257086082|ref|ZP_05580443.1| NAD-dependent DNA ligase [Enterococcus faecalis D6] gi|256994112|gb|EEU81414.1| NAD-dependent DNA ligase [Enterococcus faecalis D6] gi|315025779|gb|EFT37711.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2137] Length = 676 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 244/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D +++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHIIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668 >gi|125973550|ref|YP_001037460.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405] gi|256003369|ref|ZP_05428360.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360] gi|281417755|ref|ZP_06248775.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20] gi|166215580|sp|A3DE88|DNLJ_CLOTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|125713775|gb|ABN52267.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405] gi|255992659|gb|EEU02750.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360] gi|281409157|gb|EFB39415.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20] gi|316940208|gb|ADU74242.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 1313] Length = 663 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 238/703 (33%), Positives = 398/703 (56%), Gaps = 46/703 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L + ++YH YY P I D EYD L R + + PDL P+ P +I Sbjct: 5 KRILELREILNYHSHKYYVEDAPEISDFEYDELYRELEKLEQERPDLI---TPDSPTQRI 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG+ KV H++ SL +++ E+L F R+ ++ + + + +E KIDG Sbjct: 62 GGKPLEGFKKVVHAVQMQSLSDVFSREELLAFDRRV----REAVGDDVEYVVEKKIDGLS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +++ YE G F A RGDG GEDV+ ++ I TIP L ++P ++EVRGEV+ISK DF Sbjct: 118 VSLVYENGVFTRGATRGDGLVGEDVTQNLKTIRTIPLRLKRDLP-LLEVRGEVFISKKDF 176 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 + +N+E A G++ +ANPRNAA+G LR+L+P + R L+ FV + + K E Sbjct: 177 IKINEEQEAAGQQLFANPRNAAAGSLRQLDPKVTSQRKLDIFVFNIQRIEGQSFKTHSET 236 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+ ++ LGF + G + + + N + R + ++IDG V KV+ ++ LG Sbjct: 237 LEFLKELGFKTSPGYKVCKDINAVWEEINRIGEERGEIDFEIDGAVVKVNSLEQREILGS 296 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW +++K+ + T + I + +GRTG+LTP+A +PV + G+ ++ ATLHN D Sbjct: 297 TIKAPRWAVAYKYPAEVKETVVKKITVNVGRTGVLTPIAIFDPVRLAGSTVSRATLHNMD 356 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YIK +DIR+GD V +++AG++IP+VVD++ +R + F+ P CP+C Sbjct: 357 YIK-----------EKDIRIGDTVRIRKAGDIIPEVVDVVFEKRSGNEAEFNMPEQCPVC 405 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + VVR+ AA+RCT G+ CSAQ ++ HF SRDA NIEGLG ++ + Sbjct: 406 GADVVREEGE------AAYRCT-GIECSAQLYRKIVHFASRDAMNIEGLGPAIIEVLLEK 458 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I+ AD++ L + ++T + NI G SV NL SI K + +++R IF Sbjct: 459 ----GLIKEIADLYYLHKEKET----LVNIERMGKKSVENLLASIEKSKQNNIDRLIFGF 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G A+ L+ +NF + ++ ++ + +D ++ +P G+ +A+++ +F++ Sbjct: 511 GIRHIGLRAAQLLS------ENF-ESLDALMNASAEDIMA---IPEFGEKMAKSVEQFFR 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +N VE L ++ +K + + E K V TGTL R +A+E + G Sbjct: 561 QKQNRDTVEKLKAAGVNTVSFGKKKIKDNRFEGKTFVLTGTLPSFTRKEAEEIIKSFGGK 620 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 S +S+KTD ++ G++ GSKL+KA++LG++I++E++F +++ Sbjct: 621 TSGSVSKKTDYVLAGEDAGSKLQKAKELGIEIIDEDKFRKMIE 663 >gi|152981161|ref|YP_001353755.1| DNA ligase (polydeoxyribonucleotide synthase) [Janthinobacterium sp. Marseille] gi|166215814|sp|A6SZQ8|DNLJ_JANMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151281238|gb|ABR89648.1| DNA ligase (Polydeoxyribonucleotide synthase) [Janthinobacterium sp. Marseille] Length = 692 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/704 (36%), Positives = 381/704 (54%), Gaps = 51/704 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E++ H+ Y+ P I D+EYD L R A+ + P+L + P ++G + Sbjct: 33 LRDELNRHNYSYHVLDNPSIPDAEYDKLFRELQALETSHPELLVFDSPT---QRVGA-LA 88 Query: 84 LSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 LS F +VTHS+P LSL + ED+ F R+ + I + E K DG I +R Sbjct: 89 LSAFPQVTHSVPMLSLGNGFEDEDIIAFDKRVS---DGLNSTEIEYATELKFDGLAINLR 145 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLAL 201 YE G V AA RGDG +GE+V+ IR + IP R+ + P++++VRGEV + K D L Sbjct: 146 YEDGILVEAATRGDGATGENVTTNIRTVRAIPLRLHTATPPKVLDVRGEVMMYKADLAKL 205 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEML 258 N G K +ANPRNAA+G LR+L+ + IT R L FF +G+G +L Sbjct: 206 NARQRDAGGKEFANPRNAAAGSLRQLD-SRITAQRTLRFFAYGIGMLEGAEMPPSHSALL 264 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 LG PV G++ +Y + R TLPY+IDG+VYKV+ Q+QLG Sbjct: 265 DWYAELGLPVCAERAVVKGAAGLLEFYKAVGQKRPTLPYEIDGVVYKVNRVEQQQQLGFV 324 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +R+PR+ I+HKF ++A T + I++Q+GRTG +TPVARL PV +GG +TNATLHNED Sbjct: 325 SRAPRYAIAHKFPAEEALTTVQGIEVQVGRTGAITPVARLAPVLVGGVTVTNATLHNEDE 384 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 ++ +DI++GD V+V+RAG+VIP+VV + +R DAQPF P+ CP+C Sbjct: 385 VR-----------RKDIQIGDTVIVRRAGDVIPEVVAYVPEKRPVDAQPFVMPTNCPVCN 433 Query: 439 SRVVRDLNPKTGKLVAAHRCTGG-LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V+ + A RC+GG + C+AQ+ L HFVSR A ++EGLG Q ++ Sbjct: 434 SPIVKLEDE------AIARCSGGWVKCAAQRKGGLLHFVSRRAMDVEGLGDQLVEQLVDK 487 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I AD++ L R ++ D S N+ ++ K ++ +L RFI++L Sbjct: 488 H----IITTAADLYKLGFRALAELDRM------ADKSAQNVMAALEKSKSTTLARFIYAL 537 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG A+ LA+++ + + Q L+ V +G ++AQ+I F Sbjct: 538 GIRHVGEATAKELARHFGNLEALLQASEE----------QLLEVADIGPVVAQSIRSFLS 587 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 +P N+ +E L +N K V TGTL + R +A E + G V Sbjct: 588 DPLNMELIEQLQAAGVRWPEHVVENKPKPFAGKTFVLTGTLPTLSRDQAAEKIEAAGGKV 647 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + +S+KT ++ G + GSKL KA++LG+ I++E L LL + Sbjct: 648 AGSVSKKTSYVVAGADAGSKLAKAEELGITILDESALLQLLDTH 691 >gi|225849186|ref|YP_002729350.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1] gi|254781434|sp|C1DW63|DNLJ_SULAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225644062|gb|ACN99112.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1] Length = 701 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 259/734 (35%), Positives = 409/734 (55%), Gaps = 61/734 (8%) Query: 2 KKRQLIPIEALSIEQARKE--LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 K R+ + ++ SI++ + E + L + I +HD YY ++P+I D EYD L + I Sbjct: 13 KTREFLNLDIKSIDRKKAESIIEDLREVIRFHDWRYYVLAQPVISDYEYDKLFKLLKDIE 72 Query: 60 HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 +PDL P+ P ++ E+ +V H P LSL+ +N DLR F R+ Sbjct: 73 SKYPDLI---TPDSPTQRVPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVRELTG 129 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RV 176 + I + +EPK DG I++ YEK F A RGDG GED++ ++ I +IP + Sbjct: 130 LE---KIEYAVEPKFDGAGISLIYEKDLFKRGATRGDGEVGEDITNNLKVIKSIPLSAKF 186 Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235 S I ++ E+RGEV I K+ F +N++ + G +ANPRNAA+G +R +P ++ R Sbjct: 187 SSYGIDKV-EIRGEVLIRKDIFKRINEQRLEEGLPLFANPRNAAAGSIRLQDPKEVAKRG 245 Query: 236 LNFFVHGLGKTSE-------IFAKGQYEMLQKMRCLGFPVNNGV-RQANTFHGIVSYYNE 287 L FV+ + + K + ++ + LGF V + N ++ Y E Sbjct: 246 LEAFVYQITYAEKDGKNLLGTVLKKHSDNIKMLHLLGFKTPYEVLKVCNGIDEVIDYCRE 305 Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347 + R PY+IDG+V KV++ SL ++LG + PRW I++KF +QA+T+++D+ Q+G Sbjct: 306 WERKRDNYPYEIDGMVIKVNDISLYEKLGFTSHHPRWAIAYKFKARQATTKIIDVVFQVG 365 Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 RTG +TPVA+L+PV IGG ++++ +L NED+I+ +DIR+GD VLV+RAG Sbjct: 366 RTGAITPVAKLQPVEIGGVIVSSVSLFNEDFIR-----------EKDIRIGDTVLVERAG 414 Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 +VIP VV +I R + +P FP CP C S +V+ L A +RC + C AQ Sbjct: 415 DVIPYVVMVIKEARTGNEKPIEFPKNCPSCGSPLVKPLGE------AVYRCI-NINCPAQ 467 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527 +ER+ HF S+DA +I+GL + + F+K IP DI+ L R I+NI Sbjct: 468 VIERIIHFASKDAMDIKGLSEATVKKFYKL---GLLKSIP-DIYRLDFRI------IKNI 517 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 GFG+ SV NL +I + +N L R I+ LGIR+VG A++LA S N +++ N Sbjct: 518 QGFGEKSVNNLKQAIEESKNRPLYRLIYGLGIRYVGEVTAKTLA----SAVNCLEDLKNF 573 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 + L+++P +GD +A I F+ N +N+ ++ LKE+ ++ ++ ++ Sbjct: 574 TITD------LMKLPDIGDKVATEIYNFFHNEQNLKMIQQ-LKELGVNVCNPKEEKRGKL 626 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GV 706 VFTG L+ R KA+E V LG V +S+K ++VG+ PGSKL+KAQ++ + Sbjct: 627 AGLNFVFTGALKCCSREKAKEIVESLGGNVLDTVSKKVHYLVVGEEPGSKLQKAQKIPTI 686 Query: 707 KIMNEEQFLFLLQQ 720 KI+NEE+FL ++ Q Sbjct: 687 KIINEEEFLKMIGQ 700 >gi|315145225|gb|EFT89241.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2141] Length = 676 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 246/713 (34%), Positives = 397/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + SY E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTG 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668 >gi|255971181|ref|ZP_05421767.1| NAD-dependent DNA ligase [Enterococcus faecalis T1] gi|255962199|gb|EET94675.1| NAD-dependent DNA ligase [Enterococcus faecalis T1] Length = 676 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 245/713 (34%), Positives = 398/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 RAEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668 >gi|229546559|ref|ZP_04435284.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322] gi|256854411|ref|ZP_05559775.1| DNA ligase [Enterococcus faecalis T8] gi|307274689|ref|ZP_07555861.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134] gi|307296388|ref|ZP_07576212.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411] gi|229308304|gb|EEN74291.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322] gi|256709971|gb|EEU25015.1| DNA ligase [Enterococcus faecalis T8] gi|306496043|gb|EFM65628.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411] gi|306508618|gb|EFM77716.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134] gi|315029103|gb|EFT41035.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4000] gi|315157732|gb|EFU01749.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0312] gi|323479918|gb|ADX79357.1| DNA ligase, NAD-dependent [Enterococcus faecalis 62] Length = 676 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 245/713 (34%), Positives = 397/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 295 FVLQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMV 668 >gi|88608555|ref|YP_506384.1| DNA ligase, NAD-dependent [Neorickettsia sennetsu str. Miyayama] gi|123736355|sp|Q2GDR2|DNLJ_NEOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|88600724|gb|ABD46192.1| DNA ligase, NAD-dependent [Neorickettsia sennetsu str. Miyayama] Length = 670 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 252/710 (35%), Positives = 401/710 (56%), Gaps = 53/710 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A+KE+ L +++ H+ YYQ P I D+EYD++K R + A P L G Sbjct: 2 EAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKDRYLKLLEANPSL-------GFP 54 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +G + KV H P LSL I++ E+L ++I + RF K +++ F EPKID Sbjct: 55 VVVGYPASEKFQKVKHLSPMLSLRNIFSEEELVEYIEKTKRFLNLK--SALEFLCEPKID 112 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + RY GK V A RGDG GE++ ++ I P + +++P+++EVRGEV++ Sbjct: 113 GVSFSARYVNGKLVSCATRGDGKIGENIIDNMKVINGFP-IEIMDVPDLLEVRGEVFLDH 171 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG 253 + F L + ++NPRNAA+G LR+LNP +IT R L +F + K I + Sbjct: 172 DTFQTL---------EGFSNPRNAAAGSLRQLNP-EITNERNLQYFAYSASKIDGI--EH 219 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q ++L + GF N ++ I+S+Y+ + RS + YDIDGLVYKV++ L Sbjct: 220 QEDVLHFLSGRGFMTNPLRLASSKVPEIMSFYDSVYRRRSQIKYDIDGLVYKVNDLKLHA 279 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG + +PRW I+HKF +A T L I + +GRTGI+TPVA L+P+ IGG +I+ A+L Sbjct: 280 RLGTLSDAPRWAIAHKFPSHRAKTILEKIKLSVGRTGIITPVAHLKPITIGGVVISRASL 339 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 +NED ++ +DIR GD V+V+RAG+VIPKV+++ ++ R + + F FP Sbjct: 340 YNEDELE-----------RKDIREGDLVIVERAGDVIPKVLEVDISYR-TNQERFIFPDK 387 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S ++R N AA RC C Q ++++KH VS AF+I+G+G + F Sbjct: 388 CPSCSSTLIRKNNE------AATRCNNSKKCPEQVIQQIKHLVSAQAFDIDGIGTSHISF 441 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F + F I PADIF L + + +I+ G+G+ SV N+ +I R ISLE+F Sbjct: 442 FI---EKGF-ISEPADIFRLDKHRD----EIKKYDGWGEKSVENILKNIKNSRKISLEKF 493 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IFSLGI+++G + A LA+ + S+ N+ ++ +++ + + + +G I ++++ Sbjct: 494 IFSLGIKNIGEKTAYMLAQQFKSFANWFDKM-SMLKDDTQTEDEIRNLDGMGSCICESLL 552 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +F+ + N V++L V I H N+ + KK VFTGTL I R +A+E + + Sbjct: 553 DFFSDSDNCNMVKSLSNHV--MITDHTVNIGGSLSGKKFVFTGTLLSITREEAKEIIKKA 610 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 G +V +S++ D ++ G+ GSKL KA +LG+ I+ E+ + NT Sbjct: 611 GGIVVNSISKQIDYVVAGEKAGSKLAKANELGIAIIEEKTLIEFTNGNNT 660 >gi|27468507|ref|NP_765144.1| DNA ligase [Staphylococcus epidermidis ATCC 12228] gi|81843559|sp|Q8CRU0|DNLJ_STAES RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|27316054|gb|AAO05188.1|AE016749_134 DNA ligase [Staphylococcus epidermidis ATCC 12228] Length = 665 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 247/711 (34%), Positives = 396/711 (55%), Gaps = 61/711 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +K + L ++ + YY P + DSEYD L I +P+ ++ P Sbjct: 1 MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GGE S KV H P LSL +N EDLRKF RI + + + E K Sbjct: 60 --VRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDSIGKVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP L + P EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + +E A Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+++ LGF N + + G+++Y + S R +L YDIDG+V KV++ S Q Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V++K+AG++IP+VV I++ R +++ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++++ I+ ADIF L+ ++ G V NL +I K + SLE Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + + + LI + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRH 664 V + +N + +L++++S ++ K + ++EIE K +V TG L+++ R+ Sbjct: 553 VTYLEN----SDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRN 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A E++ GA V++ +++ TDI+I G + GSKL KA++ G +I E F+ Sbjct: 609 EASEWLKMQGAKVTSSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFI 659 >gi|268323600|emb|CBH37188.1| DNA ligase [uncultured archaeon] Length = 667 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 249/699 (35%), Positives = 404/699 (57%), Gaps = 57/699 (8%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L ++I YH+ YY +P I D+EYD L + + +P+L P+ P +IG Sbjct: 14 IAQLREKIHYHNYRYYVLDEPEISDAEYDRLFVELEELERKYPELI---TPDSPTQRIGA 70 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + H IP LSL + +R F R+ R ++ I + +EPKIDG + Sbjct: 71 KPVAEFGTYKHRIPMLSLNSVNTEVAVRDFDERVRRMLGVEE---IEYVVEPKIDGLAME 127 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 + YE G F+ + RGDG +GE+++ ++ + T+P R+LS P ++EVRGEV++ + F Sbjct: 128 LVYENGVFIVGSTRGDGKTGENITQNLKTVKTLPLRILSETAP-LLEVRGEVFMPVSKFK 186 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEML 258 LND + A G + +ANPRNAA+G +R+L+ +R L+FF +G+G+T Q+E+L Sbjct: 187 ELNDLLGAKGDRMFANPRNAAAGSVRQLDSRVTASRPLDFFAYGIGRTEGKTFSTQWEVL 246 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + +GF V+ +R+ F ++ Y++E+K R L Y+IDG+V KV+ Q++LG Sbjct: 247 MYLHKIGFKVSPLIRRFKVFEDVIKYHDEVKEKRDELDYEIDGIVVKVNGIEQQERLGLI 306 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +RSPRW I++KF ++ T + DI +Q+GRTG LTPVA L PV I G ++ ATLHNE+ Sbjct: 307 SRSPRWAIAYKFPAREEFTTVNDIVVQVGRTGALTPVAILAPVQISGVTVSRATLHNENE 366 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 ++ +D+R+GD V+V+RAG+VIP+VV +I ++R + F P CPIC Sbjct: 367 LR-----------RKDVRIGDTVVVERAGDVIPEVVSVIKSKRTGAEKEFRMPGRCPICG 415 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + V+ K G +V RC G++CSAQ E +KHF S A NI+GLG++ + + Sbjct: 416 ADVL-----KEGPIV---RCI-GVSCSAQLKEWIKHFASLRAMNIDGLGEKVIAQLCDRK 466 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 + AD+F L +R+ ++ GD S N+ +++ K ++ +L R I++LG Sbjct: 467 ----MVSDAADLFFLTKRELLKLDRM------GDKSARNILNALEKSKHTTLSRLIYALG 516 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVGA A LA NF+ E+ ++ + DD L+ +P +G +A++I+ F++ Sbjct: 517 IRHVGAHTASLLA------DNFS-ELESLRNASYDD---LVHIPEIGPEVAKSIILFFKQ 566 Query: 619 PRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + LL ++ + +EK + +E K VFTG + + R +A+ V +LG Sbjct: 567 ----GGTKDLLGKLERAGVWYEKKKAAAEARLEGKTFVFTGRIS-MPREEAKSLVERLGG 621 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 V++ +S+KTD ++ G+ GSK EKA++LGVKI+ E +F Sbjct: 622 KVASSVSKKTDYVVAGEEAGSKREKAEKLGVKIIGESEF 660 >gi|293557127|ref|ZP_06675681.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039] gi|294614139|ref|ZP_06694060.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636] gi|291592989|gb|EFF24577.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636] gi|291600696|gb|EFF30994.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039] Length = 679 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 245/714 (34%), Positives = 398/714 (55%), Gaps = 63/714 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I++A K L ++ YY KP + D YD AI +PDL S Sbjct: 6 MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITS--- 62 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG++ KV H IP SL +++ E+L F R+ QK + + E Sbjct: 63 DSPTQRVGGKVLEGFEKVIHDIPLYSLNDVFSKEELIAFDQRV----QKAVGRVVDYCCE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG GE+++ ++ + ++P + L P IEVRGE Sbjct: 119 LKIDGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVP--IKLKEPMNIEVRGEC 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 ++ K F+ LN + A G+ +ANPRNAA+G LR+L+ + IT R L+ F++ + + Sbjct: 177 FMPKRSFVQLNQDREAEGKDIFANPRNAAAGSLRQLD-SKITAKRNLDTFLYTVADFGPM 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QY+ L+++ +GF N R ++ + +Y E R LPY+IDG+V KV+EF Sbjct: 236 EAKTQYDALEELEKIGFHTNREKRLCHSIDEVWAYIEEYHDKRVDLPYEIDGIVIKVNEF 295 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ QLG ++PRW ++KF ++ T + +I+ +GRTG++TP A + PV + G ++ Sbjct: 296 SLQDQLGFTVKAPRWATAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVS 355 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DYIK +DIR+ D VL+ +AG++IP+V +++++R D++ + Sbjct: 356 RASLHNGDYIK-----------LKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQ 404 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C S +V L+ + A RC C AQ E L HFVSR+A NI+GLG + Sbjct: 405 LPTHCPVCGSELVH-LDEE-----VALRCINP-KCPAQMKEGLNHFVSRNAMNIDGLGPR 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + D + AD++ L + + KI+ + S N+ +I+ ++ S Sbjct: 458 VLEQMY---DKKLVADV-ADLYKLTEEELLTLDKIK------EKSANNILTAIDNSKDNS 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +ER IF LGIRHVGA+ A+ LA+++ + ++ D+ S+I + +GDIIA Sbjct: 508 VERLIFGLGIRHVGAKAAKILAEHFGDLETLSR----------SDYESIIALDTIGDIIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE---------KNVSSEIENKKLVFTGTLQK 660 ++V ++ N V L+ E+ + E + V S + K +V TG L + Sbjct: 558 DSVVTYFSNEE----VHELMNELKQAGVNFEYKGLRSTQLQEVESPFKEKTVVLTGKLTR 613 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + R +A+E + LG V+ +S+KTDI++ G++ GSKL KAQ+LG+++ E+Q Sbjct: 614 LTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEVWTEDQM 667 >gi|325928155|ref|ZP_08189364.1| DNA ligase, NAD-dependent [Xanthomonas perforans 91-118] gi|325541451|gb|EGD12984.1| DNA ligase, NAD-dependent [Xanthomonas perforans 91-118] Length = 833 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 262/836 (31%), Positives = 424/836 (50%), Gaps = 169/836 (20%) Query: 32 DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 +D Y+Y +P + D++YD L R +A+ A P+LA ++ P ++G + Sbjct: 19 EDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPT---QRVGHLAASRFAE 75 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H++P LSL ++ E++ +F+ RI ++ + F+ EPK+DG I++RYE G+F Sbjct: 76 VRHALPMLSLGNAFSDEEVTEFVRRIS---ERLEVKQPLFSAEPKLDGLAISLRYENGEF 132 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RGDG +GEDVSA +R + IP R+ P+++EVRGEVY+ + F A N +M A Sbjct: 133 VQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRAAFEAYNAQMRA 192 Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265 G K ANPRN A+G LR+L+ R L+FF +G+G+ SE + +L ++R G Sbjct: 193 QGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQTHSAILAQLRAWG 252 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 FPV+ V G+++YY + + R L +DIDG+VYK+D+ + Q+++G +R+PRW Sbjct: 253 FPVSALVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQREMGFVSRAPRWA 312 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN D I LD Sbjct: 313 IAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-- 370 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +RVGD V+V+RAG+VIP+V ++ ++R P Q + P+ CP+C S++VR+ Sbjct: 371 ---------VRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSQIVRE- 420 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL-------------D 492 G+ V RC+G L C AQ+ E +HFVSR A +++GLG++ + D Sbjct: 421 ---EGQAV--WRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVAD 475 Query: 493 FFFKSEDPAFSIRI-----PADIFTLQRRQQTST---TKIE-NILGFG-------DVSVT 536 + S D +R+ F + R+ ++ ++E +++G G DV T Sbjct: 476 LYLLSVDQLLQLRLISTAESPHAFLREAREHLASGAYAQLETSVVGIGVDLAGERDVPQT 535 Query: 537 --------------------------NLYDSINKRRNISLERFIFSLGIRHV-------- 562 NL ++I R+ +LERF+F+LGI HV Sbjct: 536 WQADLLRAGLPRFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKAL 595 Query: 563 ------------------------GAEIARSLAKYY------------------------ 574 G E+ARSL ++ Sbjct: 596 SAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDTHP 655 Query: 575 --------LSY-----------------QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LS+ Q A +++ A +L + + ++A Sbjct: 656 PSPKLREALSFASVLEDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVVA 715 Query: 610 QAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A++++ P N A + ++ V + + + + ++ + +V TGTL + R A Sbjct: 716 -ALLQWLDRPENTALANAAQQAMETVLARLPQADALQTGPLDGQTVVITGTLAALTRDAA 774 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L L + Sbjct: 775 KQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGDHG 830 >gi|229548668|ref|ZP_04437393.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200] gi|257420983|ref|ZP_05597973.1| DNA ligase [Enterococcus faecalis X98] gi|312953107|ref|ZP_07771956.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102] gi|229306184|gb|EEN72180.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200] gi|257162807|gb|EEU92767.1| DNA ligase [Enterococcus faecalis X98] gi|310628941|gb|EFQ12224.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102] gi|315153982|gb|EFT97998.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0031] gi|315156746|gb|EFU00763.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0043] Length = 676 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 245/713 (34%), Positives = 397/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ANSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE+ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQAMV 668 >gi|78047224|ref|YP_363399.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123744002|sp|Q3BV14|DNLJ_XANC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78035654|emb|CAJ23345.1| DNA ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 833 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 262/836 (31%), Positives = 423/836 (50%), Gaps = 169/836 (20%) Query: 32 DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 +D Y+Y +P + D++YD L R +A+ A P+LA ++ P ++G + Sbjct: 19 EDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPT---QRVGHLAASRFAE 75 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H++P LSL ++ E++ +F+ RI ++ + F+ EPK+DG I++RYE G+F Sbjct: 76 VRHALPMLSLGNAFSEEEVTEFVRRIS---ERLEVKQPLFSAEPKLDGLAISLRYENGEF 132 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RGDG +GEDVSA +R + IP R+ P+++EVRGEVY+ + F A N +M A Sbjct: 133 VQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRAAFEAYNAQMRA 192 Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265 G K ANPRN A+G LR+L+ R L+FF +G+G+ SE + +L ++R G Sbjct: 193 QGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQTHSAILAQLRAWG 252 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 FPV+ V G+++YY + + R L +DIDG+VYK+D+ + Q+++G +R+PRW Sbjct: 253 FPVSALVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQREMGFVSRAPRWA 312 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN D I LD Sbjct: 313 IAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-- 370 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +RVGD V+V+RAG+VIP+V ++ ++R P Q + P+ CP+C S++VR+ Sbjct: 371 ---------VRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSQIVRE- 420 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL-------------D 492 G+ V RC+G L C AQ+ E +HFVSR A +++GLG++ + D Sbjct: 421 ---EGQAV--WRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVAD 475 Query: 493 FFFKSEDPAFSIRI-----PADIFTLQRRQQTST---TKIE-NILGFG-------DVSVT 536 + S D +R+ F + R+ ++ ++E +++G G DV T Sbjct: 476 LYLLSVDQLLQLRLISTAESPHAFLREAREHLASGAYAQLETSVVGIGVDLAGERDVPQT 535 Query: 537 --------------------------NLYDSINKRRNISLERFIFSLGIRHV-------- 562 NL ++I R+ +LERF+F+LGI HV Sbjct: 536 WQADLLRAGLPRFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKAL 595 Query: 563 ------------------------GAEIARSLAKYY------------------------ 574 G E+ARSL ++ Sbjct: 596 SAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDTHP 655 Query: 575 --------LSY-----------------QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LS+ Q A +++ A +L + + ++A Sbjct: 656 PSPKLREALSFASVLEDMDIPKVTPVRAQQLAASVDSFAALRTAGADALQQAGVPAPVVA 715 Query: 610 QAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A++++ P N A + ++ V + + + + ++ + +V TGTL + R A Sbjct: 716 -ALLQWLDRPENTALANAAQQAMETVLARLPQADALQTGPLDGQTVVITGTLAALTRDAA 774 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I E + L L + Sbjct: 775 KQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWGEARLLAFLGDHG 830 >gi|169831769|ref|YP_001717751.1| NAD-dependent DNA ligase [Candidatus Desulforudis audaxviator MP104C] gi|254781311|sp|B1I551|DNLJ_DESAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169638613|gb|ACA60119.1| DNA ligase, NAD-dependent [Candidatus Desulforudis audaxviator MP104C] Length = 672 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 256/707 (36%), Positives = 376/707 (53%), Gaps = 47/707 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+AR L +EI YHD YY P+I D+EYD L R A+ A+P+L P+ P Sbjct: 4 EEARARAEELRREIEYHDHRYYVLDDPVIEDAEYDRLVRELVALETAYPELV---TPDSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG V H P LSL +N DL F R+ +D + + +E K Sbjct: 61 TQRVGGRPREGFVTVQHRAPMLSLANAFNAADLADFDRRVRTGLADED---VDYVVELKF 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG +++ YE G+ V A RGDG +GE+++ +R I +IP R+ P +IEVRGEVY+ Sbjct: 118 DGVAVSLTYEHGRLVRGATRGDGVTGEEITPNLRTIRSIPLRLRQPGAPNVIEVRGEVYM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 K F LN+ G +ANPRNAA+G LR+L+P R L+ +++G+G T I Sbjct: 178 PKEAFARLNERREDAGLPLFANPRNAAAGSLRQLDPGITAERKLDIWLYGIGYTDGIVFG 237 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E L + GF VN R +T + + + R LPY IDGLV KVD Q Sbjct: 238 RHSEALAWLGEQGFRVNPHTRIFSTLEEVERHLEHWREARFELPYVIDGLVLKVDRLDQQ 297 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +SPRW +++K+ +QA T + DI I++GRTG+LTP A L PV + G ++ A+ Sbjct: 298 ERLGTTLKSPRWAVAYKYPPEQAETTVEDIIIRVGRTGVLTPTAVLSPVRLAGTTVSRAS 357 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I+ +DIR+GD VL+ +AG++IP+++ +R PF+ P Sbjct: 358 LHNEDLIR-----------EKDIRIGDVVLIHKAGDIIPEILGSRPEKRTGRETPFAMPV 406 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S +VR G++ C+ +AC A+ L HFVSR+AF I GLG + Sbjct: 407 QCPECASLLVR----PEGEV--GVYCS-NVACPARLERSLLHFVSRNAFAINGLGPAVIQ 459 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + + PAD+FTL R + +I G S NL +I + SL R Sbjct: 460 QLLERR----LVADPADLFTLTREELVGLERI------GPKSADNLLKAIQNSKRNSLAR 509 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 IFSLGIRHVG AR LA+ + S + ++A ++ L VP +G IA ++ Sbjct: 510 LIFSLGIRHVGERAARLLAERFGS-------LAGLMAAGREE---LEAVPEIGPKIADSV 559 Query: 613 VEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + F+ +N V L++ V+ R + + K V TGTL++ R +A + Sbjct: 560 LNFFAREQNRRVVAKLVRAGVNTVADRPAAAGTGPLAGKTFVLTGTLEEFSRAEAAARIE 619 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +LG V + +SR+TD +++G NPG K +KA +LGV I+ E +F LL Sbjct: 620 ELGGRVVSNVSRRTDYVVLGKNPGGKYDKAVKLGVNIIEEPEFKRLL 666 >gi|330685564|gb|EGG97210.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU121] Length = 668 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 254/703 (36%), Positives = 394/703 (56%), Gaps = 62/703 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P+ P ++G Sbjct: 10 ELHDLLNQYSYE---YYVQDNPSVPDSEYDKLLHELIHIEEEHPEF---KTPDSPTVRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N EDLRKF RI +++ + + E KIDG + Sbjct: 64 GEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RENIGKVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++YE G+FV RGDG +GED++ +R I IP L + P EVRGE Y+ + F+ Sbjct: 119 SLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYMPRKSFM 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + ++ A Q L Sbjct: 177 NLNEEKEKNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSINDFTDFEATTQSGAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N+ + + G++ Y + + R TLPYDIDG+V KV++ Q ++G Sbjct: 237 DELDQLGFKTNHERERVSDIDGVLKYIEKWTAERETLPYDIDGIVIKVNDLEQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I++ R DA+ + P+ CP C Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIDRRPEDAETYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++++ Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQQLYEND 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L+ ++ G V NL ++I + ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLEEEDLLPLERM------GSKKVENLLEAIKQAKSQSLEHLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + +R LA+ Y + ++ ++ ++ LI + +G +AQ++V + +N Sbjct: 509 IRHLGVKASRVLAEKY-------ETMDRLLTVTEEE---LIAIHDIGGKLAQSVVTYLEN 558 Query: 619 PRNICAVEALLKEVSPSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRHKAQEYVT 671 +I A+ LK+ + K V ++EIE K +V TG L+++ R++A +++ Sbjct: 559 D-DIRALIQKLKD--KDVNMTYKGVKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASQWLQ 615 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 GA V+ +++ TDI+I G + GSKL KA++ G +I EE+F Sbjct: 616 MQGAKVTNSVTKSTDILIAGADAGSKLTKAEKFGTEIWTEEEF 658 >gi|307269776|ref|ZP_07551106.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248] gi|306513886|gb|EFM82488.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248] Length = 676 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 245/713 (34%), Positives = 397/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTG 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMV 668 >gi|297583057|ref|YP_003698837.1| DNA ligase [Bacillus selenitireducens MLS10] gi|297141514|gb|ADH98271.1| DNA ligase, NAD-dependent [Bacillus selenitireducens MLS10] Length = 668 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 248/710 (34%), Positives = 395/710 (55%), Gaps = 59/710 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + +K + +L + ++ + YY +P + D+EYD L + + + A P+L RS+ P+ Sbjct: 5 QDVQKRIDTLTETVNDYAHHYYVLDQPKVPDAEYDRLLQELEELEAAHPELKRSDSPS-- 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI--FFTLEP 132 ++GGE KV H IP LSL +N E+LR F R+ +D + +++E Sbjct: 63 -ERVGGEPLDHFRKVQHDIPMLSLSNAFNEEELRDFDRRV------RDGLGVNPTYSVEL 115 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG IT++YE G+FV A RGDG +GED++ ++ IP+IP L L +EVRGE + Sbjct: 116 KIDGLAITLKYEAGEFVLGATRGDGTTGEDITRNLKTIPSIP--LKLKESVTLEVRGEAF 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + K F LN+ G +ANPRNAA+G LR+L+P R L+ FV+ +G+ Sbjct: 174 MPKASFNRLNEAREEKGEALFANPRNAAAGSLRQLDPKIAAKRNLDMFVYSVGQIEGKTI 233 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 E L + LGF +N + N +V Y N R L Y+IDG+V KVD Sbjct: 234 DSHTETLDYVSKLGFKINPEAKHCNGIEEVVDYVNSWLDRRGDLDYEIDGIVIKVDSLDH 293 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG A+SPRW + KF ++ T+L+DI++ IGRTG++TP A LEPV++ G + A Sbjct: 294 QEELGFTAKSPRWATAFKFPAEEVVTKLIDIELSIGRTGVVTPTAILEPVSVAGTTVQRA 353 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED I+ +D+++GDRV +K+AG++IPKVV+++ +R + FS P Sbjct: 354 SLHNEDLIR-----------QQDVKIGDRVTIKKAGDIIPKVVNVLTEQRDGSEEDFSMP 402 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C+S +VR G++ A RC C AQ E L HF SRDA NI+GLG++ + Sbjct: 403 EHCPACESELVR----IDGEV--ALRCVNP-ECPAQIREGLIHFASRDAMNIDGLGERVI 455 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 E +R AD++ L++ + ++ G+ S TNL ++I ++ SLE Sbjct: 456 TQLHSRE----LVRNVADLYRLEKEAIMALERM------GEKSATNLVEAIEATKSNSLE 505 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIR VG++ A++LA ++ + + D +LI V +GD +A + Sbjct: 506 KLLFGLGIRFVGSKAAKTLAMHFETMDALMEA----------DKEALIAVDEIGDKMADS 555 Query: 612 IVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 IV ++ P + AL + P E++ S + K +V TG++++ R + Sbjct: 556 IVMAFEQPGMKHLIGALKDLGVNMTYTGPKRITAEES-DSPLAGKTVVITGSMEQYSRKE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 A+ V G V+ +S+KTD++I G+ GSKL+KA +LG+++ +E +F+ Sbjct: 615 AKTEVEARGGKVTGTVSKKTDLVIAGEKAGSKLDKANELGIEVWDEARFI 664 >gi|15606063|ref|NP_213440.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5] gi|7673992|sp|O66880|DNLJ_AQUAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2983242|gb|AAC06838.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5] Length = 720 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 250/725 (34%), Positives = 402/725 (55%), Gaps = 51/725 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 R++ ++ LS E+A+K L + I YHD YY + P+I D +YD L R I +P Sbjct: 19 RKIKDVKVLSFEEAKKLAEDLREVIRYHDYKYYVEANPVIPDYDYDRLFRALKEIEKKYP 78 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 +L P+ P ++ E++ V H P LSL+ ++ ++LR+F R+ Q Sbjct: 79 ELI---TPDSPTQRVASEISGEFPTVKHYTPMLSLDNAYSEDELREFDRRVR---QITGL 132 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-- 181 + + +EPK+DG I + YE FV A RGDG GED++ ++ I TIP + Sbjct: 133 EVVEYAVEPKLDGAGIALVYENDLFVRGATRGDGEYGEDITNNLKTIKTIPLKAEFSRFG 192 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240 ++ E+RGEV I K++F LN E + G P+ANPRNAA+G +R+ +P ++ R L V Sbjct: 193 IKLAEIRGEVVIRKDEFQKLNKERMEEGLPPFANPRNAAAGSIRQKDPKEVAKRNLEAIV 252 Query: 241 HGLG--KTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + L + E YE L+ + LGF + + ++ Y E + R + PY Sbjct: 253 YHLSYVEPPETEPPTHYESLKMLHTLGFKTLFKDTKVCKGIDEVIEYCKEWEKKRDSYPY 312 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG+V KV++ L K LG + PRW I++KF ++A T+L+D+ Q+GRTG +TPV + Sbjct: 313 EIDGMVVKVNDRRLWKVLGYTSHHPRWAIAYKFKPRRAVTKLVDVVFQVGRTGTITPVGK 372 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV +GG +++ +L NED+I+ +DIR+GD V+V+RAG+VIP VV+++ Sbjct: 373 LEPVELGGVTVSSVSLFNEDFIR-----------EKDIRIGDWVVVERAGDVIPYVVEVL 421 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +R + +P FP +CP C S +V+ P+ A RC ++C AQ + R+KH+ S Sbjct: 422 KEKRTGEEKPVEFPKYCPSCGSELVK--LPEE----VAIRCI-NISCPAQSVLRIKHWAS 474 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 RDA +I GLG + F + A + D++ L+ T I + GFG+ S N Sbjct: 475 RDAMDIRGLGDATIKLLF-NRGLAKDV---GDLYYLK------LTDILKLPGFGEKSAMN 524 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +I + +N L+R ++ LGIR+VG A+ +A+ IN++ + Sbjct: 525 LLKAIEESKNRPLDRVLYGLGIRYVGQTTAKKIAEI----------INSVWDLKDIPLEK 574 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 L+R+ +G +A++I EF+ P+N+ ++ L K + ++ V+ ++ K VFTGT Sbjct: 575 LMRLEGIGYKVARSIKEFFNIPQNLEVLKKLEKAGVNLAKKVKEKVADVLKGKTFVFTGT 634 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716 L R KA E V LG S ++ KTD ++VG +PG +KL KA++ GVK + EE+F+ Sbjct: 635 LDCCSREKAGEIVEMLGGKFSNSVTSKTDYLVVGKDPGATKLSKAKKYGVKTITEEEFVN 694 Query: 717 LLQQY 721 +++ Y Sbjct: 695 MIKDY 699 >gi|172056504|ref|YP_001812964.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15] gi|254781332|sp|B1YJ17|DNLJ_EXIS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171989025|gb|ACB59947.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15] Length = 664 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 256/716 (35%), Positives = 406/716 (56%), Gaps = 63/716 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQAR E L Q+++ + YY +P + DS YD L R + A P+L P+ Sbjct: 2 IEQARIE--ELRQKLNQYSYEYYVQDQPTVPDSTYDQLLRELTELETAHPELI---TPDS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + KVTH +P LSL +++ ++R+++ RI R + S + E K Sbjct: 57 PTQRVGAAALDAFEKVTHDLPMLSLGNVFDETEIREWVARIERSLGR----STTYVAELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG I+++YE G+ V A RGDG GE+++ +R I +P L N E +EVRGE Y+ Sbjct: 113 FDGLAISLKYEDGQLVRGATRGDGTVGENITQNLRTIKALPLRLRRN--ETVEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 K F LN + A +ANPRNAA+G LR+L+ + +R L+ FV+G+G + + A+ Sbjct: 171 PKQSFERLNADRAAREEALFANPRNAAAGSLRQLDSSITASRNLSLFVYGVGVNT-LSAR 229 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E + ++ LG P N ++ T I++Y RS LPY+IDG+V KVD + Q Sbjct: 230 SHSEAMLQLAELGLPTNKEMQTCETVEEILAYIAHWTMERSNLPYEIDGIVLKVDRYDDQ 289 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG A+SPR+ ++KFA ++ T + ++D +GRTG +TP AR PV + G+ ++ AT Sbjct: 290 EELGFTAKSPRFATAYKFAAEEVMTTVEEVDFSVGRTGKVTPRARFAPVVVAGSTVSYAT 349 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D+I +DIR+ D+V++K+AG+VIP VV ++V+ER + QP FP+ Sbjct: 350 LHNADFIT-----------EKDIRLHDQVIIKKAGDVIPAVVSVVVSERTGNEQPIEFPA 398 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C+S +VR G+ A RC C AQ +E + HFVSR A NI+GLG++ + Sbjct: 399 HCPACESELVR----LEGE--ADIRCVSP-ECPAQLVEGIIHFVSRQAMNIDGLGEKVVR 451 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++ E +IR AD++ L R + + ++ G+ SV NL +I + SLER Sbjct: 452 QLYEHE----AIRTLADLYRLDRDELLTYERM------GETSVDNLLTAIEASKQNSLER 501 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 +F LGIR VG + A LA+ + S AQ E +I+A + +G IA + Sbjct: 502 LMFGLGIRLVGQKAAYLLAERFDSLDGIAQAEYEDILAIDG-----------IGSKIADS 550 Query: 612 IVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + +++++P +AL+K+++ +G+ ++ + K +V TGTL+ ++R + Sbjct: 551 VTKYFEHPE----AQALIKDLAELGLNQQFLGQRVDQSNAPLAGKTIVLTGTLESLKRSE 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 A + + LGA V+ +S+KTDI++ G+ GSKL KA+ LG++I NE Q L L +Y Sbjct: 607 AGKRLELLGADVTGSVSKKTDILVAGEKAGSKLTKAESLGIEIWNETQLLEELAKY 662 >gi|319399869|gb|EFV88116.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis FRI909] Length = 665 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 248/707 (35%), Positives = 389/707 (55%), Gaps = 53/707 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +K + L ++ + YY P + DSEYD L I +P+ ++ P Sbjct: 1 MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTV 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GGE S KV H P LSL +N EDLRKF RI + + + E K Sbjct: 61 ---RVGGEAQSSFKKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDSIGQVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP L + P EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + +E A Sbjct: 171 PRRSFIHLNNEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+++ LGF N + + G+++Y + S R +L YDIDG+V KV++ S Q Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRESLSYDIDGIVIKVNDLSQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V++K+AG++IP+VV I++ R +++ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++++ I+ ADIF L+ ++ G V NL +I K + SLE Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + + + LI + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALL-KEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 V + +N +E L K V+ S I E + + K +V TG L+++ R++A E Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIDGHPDFSGKTIVLTGKLEQMTRNEASE 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 ++ GA V+ +++ TDI+I G + GSKL KA++ G +I E F+ Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFI 659 >gi|52079149|ref|YP_077940.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580] gi|52784516|ref|YP_090345.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580] gi|319647076|ref|ZP_08001302.1| DNA ligase [Bacillus sp. BT1B_CT2] gi|81386291|sp|Q65MR2|DNLJ_BACLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52002360|gb|AAU22302.1| DNA ligase [Bacillus licheniformis ATCC 14580] gi|52347018|gb|AAU39652.1| LigA [Bacillus licheniformis ATCC 14580] gi|317390900|gb|EFV71701.1| DNA ligase [Bacillus sp. BT1B_CT2] Length = 667 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 249/712 (34%), Positives = 401/712 (56%), Gaps = 54/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A++ + L I+ ++ Y+ P + DSEYD L + A+ PDL + P+ P Sbjct: 4 EAAKRRVEQLHALINKYNYEYHTLDDPSVPDSEYDKLMKELIALEEEHPDL---KTPDSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + + KV H P LSL +N EDLR F R+ + + + +E KI Sbjct: 61 SQRVGGAVLDAFQKVQHKTPMLSLGNAFNEEDLRDFDRRVRQAV-----GDVEYNVEFKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I IP + ++ IEVRGE ++ Sbjct: 116 DGLAVSLRYENGVFVRGATRGDGTTGEDITENLKTIRNIPLRMKRDLS--IEVRGEAFMP 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F LN I +P+ANPRNAA+G LR+L+P R L+ FV+ + + E+ + Sbjct: 174 KRSFELLNKARIERDEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVET 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + L + LGF N+ ++ +T ++ E+K+ R+ LPY+IDG+V KVD Q+ Sbjct: 234 QSQGLDFLDELGFKTNHERKKCSTIEEVIEIVEELKTKRADLPYEIDGIVIKVDSLDQQE 293 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T LLDI++ +GRTG +TP A LEPV + G + A+L Sbjct: 294 ELGFTAKSPRWAIAYKFPAEEVVTTLLDIELSVGRTGAVTPTAILEPVKVAGTTVQRASL 353 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED IK +DIR+ D+V+VK+AG++IP+VV+++V +R + F+ P Sbjct: 354 HNEDLIK-----------EKDIRLLDKVVVKKAGDIIPEVVNVLVEQRTGKEKEFNMPKE 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 403 CPECGSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVITQ 455 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ ED ++ AD++ L R Q + N+ G+ S NL +SI K + SLER Sbjct: 456 LFR-EDLVHNV---ADLYKLTREQ------LINLERMGEKSTDNLLNSIEKSKKNSLERL 505 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR +GA+ A++LA ++ + + LI V +GD +A A+V Sbjct: 506 LFGLGIRFIGAKAAKTLAMHFETLDKLKKATKE----------ELIEVDEIGDKMADALV 555 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQRHKAQE 668 +++ + ++ L + ++ + K ++E + K +V TG L ++ R+ A+ Sbjct: 556 TYFEKEEILKLLDELEELGVNTVYKGPKKAAAEASDSYFAGKTIVLTGKLSEMSRNDAKA 615 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LG ++ +S+KTD++I G+ GSKL KA+ L +++ +E + + L++ Sbjct: 616 EIEALGGKITGSVSKKTDLVIAGEAAGSKLAKAEDLNIEVWDEARLISELKK 667 >gi|254832503|ref|ZP_05237158.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 10403S] Length = 671 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 257/711 (36%), Positives = 384/711 (54%), Gaps = 66/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N EDL F RI + K + I + E KIDG Sbjct: 62 GGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K F Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R ++ + +Y +E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKAIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L S K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N + + ND +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKVADKETLTNIND----------IGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667 N V LL+E+ + G +++S E K +V TG L+K+ R+ A+ Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|320160951|ref|YP_004174175.1| DNA ligase [Anaerolinea thermophila UNI-1] gi|319994804|dbj|BAJ63575.1| DNA ligase [Anaerolinea thermophila UNI-1] Length = 674 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 260/710 (36%), Positives = 386/710 (54%), Gaps = 63/710 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E +L+++I YHD YY P+I D+EYD L R I A P+ P+ P ++ Sbjct: 8 QEYENLKKQIHYHDYRYYVLDDPVISDAEYDRLILRLKQIEFAHPEWI---TPDSPSQRV 64 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF---FTLEPKID 135 GG KV H P LSL + D+ +I RI +K D + F LEPKID Sbjct: 65 GGMPQDKFNKVRHPSPILSLANGFEKSDVLAWIERI-----RKLDARVATADFVLEPKID 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGE 190 G + + Y+ G FV A RGDG GED++A +R I ++P V+ + +PE + VRGE Sbjct: 120 GLTVVLTYQNGVFVQGATRGDGEVGEDITANLRTIRSLPLVIPVEQNNVPVPEWVVVRGE 179 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 ++ DF LN + G K Y NPRN A+G LR+L+P+ +R +N FV+ + +S Sbjct: 180 AFMFIKDFEELNKRLEQSGEKTYLNPRNTAAGSLRQLDPSLTASRPINIFVYAIVASSAP 239 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + Q+E LQ ++ GFPV + V+ + ++ ++ + R TLPY+ DG+V K+++ Sbjct: 240 LPQTQWEQLQTLKAWGFPVASDVQYCASVEEVLKGLDQWREKRDTLPYEADGVVIKINDL 299 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 L LG + PR ++ KF ++ STRLLDI + +GRTG+LTP A LEPV IGG ++ Sbjct: 300 ELASSLGYVGKDPRGALAFKFPAREISTRLLDIGVNVGRTGVLTPYAILEPVEIGGVIVK 359 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN D+I+ +DIR+GDRV+VKRAG+VIP V+ IV R D + F Sbjct: 360 QATLHNFDFIR-----------EKDIRIGDRVMVKRAGDVIPYVIGPIVELRTGDERVFI 408 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C V + G++ A C + C AQ + ++HFVSR A +I GLG + Sbjct: 409 PPEMCPACGQPV----SHVEGEV--AWYCL-NVTCPAQIIRNVEHFVSRGAMDIVGLGIK 461 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + F ++ PAD++ L S + + GF D N+ +I R+ Sbjct: 462 IVEQLVEK---GF-VQSPADLYFL------SKEDLLTLEGFADKKAENILQAIQNSRSRP 511 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R I +LGIR VG +A LAK++ N+ A + L+ + VG IA Sbjct: 512 LSRLITALGIRGVGEVMAGELAKHF----------KNLDALSKATVQQLMEIEGVGPNIA 561 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRH 664 Q+IVE++ + N E L K + E+ +E+ L V TGTL++ R Sbjct: 562 QSIVEWFTHSGN---QEFLRKLREAGVWPTEQTPVESVESLPLAGLTFVVTGTLKEFSRE 618 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + Y+ +LGA V+ +SR T ++VG+NPGSKLEKA+QLGV+I+ EE+ Sbjct: 619 GIKGYLERLGAKVTDSVSRNTSYLLVGENPGSKLEKARQLGVRIITEEEL 668 >gi|152974127|ref|YP_001373644.1| NAD-dependent DNA ligase LigA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|190359228|sp|A7GKJ1|DNLJ_BACCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152022879|gb|ABS20649.1| DNA ligase, NAD-dependent [Bacillus cytotoxicus NVH 391-98] Length = 669 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 252/710 (35%), Positives = 399/710 (56%), Gaps = 57/710 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +++Q +EL L +Y Y+ P + D+EYD + + P+ + P+ Sbjct: 5 AVQQRIEELRDLLNTFNYQ---YHVLDNPSVSDAEYDRNMQELIKLETENPEFITEDSPS 61 Query: 73 GPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++GG + L +F KVTH P LSL +N DLR F R+ Q D ++ + E Sbjct: 62 ---VRVGGAV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDGVNVRYICE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YEKG+F+ + RGDG +GED++ ++ I IP L L +EVRGE Sbjct: 115 LKIDGLAVSLHYEKGRFIQGSTRGDGITGEDITQNLKTIKAIP--LRLQEEVTLEVRGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K F+ LN+E G +ANPRNAA+G LR+L+P R L+ FV+GL Sbjct: 173 YMPKRSFVKLNEEKEQNGEAVFANPRNAAAGSLRQLDPKIAAKRNLSMFVYGLADIEGKT 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LGF N R T +++Y E + R L Y+IDG+V KVD+ + Sbjct: 233 ITSHSEALDFLGELGFKTNPNRRICETIEEVIAYVEEWQEKRPNLDYEIDGIVIKVDDVT 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G ++ Sbjct: 293 LQERLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V+VK+AG++IP+VV+++ ++R + + Sbjct: 353 ASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVVFDKRTGKEEAYHM 401 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR L + A RC AC AQ E L HFVSR+A NI+GLG++ Sbjct: 402 PTHCPTCDSGLVR-LEEEV-----ALRCINP-ACPAQIREGLIHFVSRNAMNIDGLGERV 454 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ A IR AD++ L + Q + FG+ S +NL +I + SL Sbjct: 455 ITQLFE----ANYIRTFADLYGLTKDQLLQLDR------FGEKSASNLVQAIEASKENSL 504 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR+LA+++ + ++N++ ++ L + +G+ +AQ Sbjct: 505 ERLLFGLGIRHVGAKAARTLAEHF-------ETMDNLVKAGEEE---LKAINEIGEKMAQ 554 Query: 611 AIVEFYQNPRNICAVEAL----LKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHK 665 +IV ++ N + ++ + I R + +N++S K +V TG L+ + R + Sbjct: 555 SIVTYFDNEDVLHLIQQFKDYGVNMTYKGIKRADLQNIASYFAGKTVVLTGKLEVMGRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 A++ + LG V+ +S+ TD++I G+ GSKL +A++ ++I NEE+FL Sbjct: 615 AKKKIEALGGKVTGSVSKSTDLVIAGEAAGSKLAQAEKHNIEIWNEERFL 664 >gi|242241743|ref|ZP_04796188.1| DNA ligase [Staphylococcus epidermidis W23144] gi|242234833|gb|EES37144.1| DNA ligase [Staphylococcus epidermidis W23144] Length = 665 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 248/707 (35%), Positives = 389/707 (55%), Gaps = 53/707 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +K + L ++ + YY P + DSEYD L I +P+ ++ P Sbjct: 1 MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTV 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GGE S KV H P LSL +N EDLRKF RI + + + E K Sbjct: 61 ---RVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDSIGQVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP L + P EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + +E A Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+++ LGF N + + G+++Y + S R +L YDIDG+V KV++ S Q Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRESLSYDIDGIVIKVNDLSQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V++K+AG++IP+VV I++ R +++ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++++ I+ ADIF L+ ++ G V NL +I K + SLE Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKERSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + + + LI + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALL-KEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 V + +N +E L K V+ S I E + + K +V TG L+++ R++A E Sbjct: 553 VTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIDGHPDFSGKTIVLTGKLEQMTRNEASE 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 ++ GA V+ +++ TDI+I G + GSKL KA++ G +I E F+ Sbjct: 613 WLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFI 659 >gi|223044011|ref|ZP_03614051.1| DNA ligase, NAD-dependent [Staphylococcus capitis SK14] gi|222442554|gb|EEE48659.1| DNA ligase, NAD-dependent [Staphylococcus capitis SK14] Length = 667 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 250/701 (35%), Positives = 386/701 (55%), Gaps = 58/701 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVQDNPSVPDSEYDKLLHELIDIEEKHPEYKTA---DSPTVRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N EDLRKF RI +++ ++ + E KIDG + Sbjct: 64 GEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RENIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y+ G+FV RGDG +GED++ +R I IP L + P EVRGE Y+ + F+ Sbjct: 119 SLKYQNGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYMPRQSFM 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN E G +P+ANPRNAA+G LR+L+ R L+ F++ + +E A Q L Sbjct: 177 NLNAEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFDATTQSGAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 Q++ LGF N + G++ Y + R +L YDIDG+V KV++ Q+++G Sbjct: 237 QELDDLGFKTNQERERVADIDGVLDYIEKWTEKRESLSYDIDGIVIKVNDLDQQEEMGYT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ ++LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVSKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I++ R DA+ + P+ CP C Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPKDAKTYHMPTLCPSCD 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + +++E Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQQLYENE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L+ ++ G+ V NL +I K ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLKEEDLLPLERM------GNKKVENLLAAIEKAKDNSLEHLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + ++ LA+ Y + N+ L+ + +GD +AQ++V + +N Sbjct: 509 IRHLGVKASQVLAEKYETMDRLL----NVTEE------ELVAIHDIGDKLAQSVVTYLEN 558 Query: 619 PRNICAVEALLKEVS-----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ++I A+ LK+ + I E E K +V TG L+++ R +A +++ Sbjct: 559 -QDIRALIQKLKDKNVNMNYKGIKTTEIEGHPEFNGKTIVLTGKLEQMTRSEATQWLEMQ 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 GA V++ +++ TDI+I G + GSKL KA++ G +I E++F Sbjct: 618 GAKVTSSVTKSTDIVIAGADAGSKLAKAEKFGTEIWTEDEF 658 >gi|255026038|ref|ZP_05298024.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-003] Length = 671 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 258/711 (36%), Positives = 382/711 (53%), Gaps = 66/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N EDL F RI + K + I + E KIDG Sbjct: 62 GGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K F Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKKCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L S K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N + ND +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667 N V LL+E+ + G +++S E K +V TG L+K+ R+ A+ Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|253729682|ref|ZP_04863847.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726568|gb|EES95297.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 667 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/702 (35%), Positives = 386/702 (54%), Gaps = 58/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +DLRKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y G FV RGDG +GED++ ++ I IP L + P +EVRGE Y+ + FL Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E L Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q ++G Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I R DA + P+ CP C Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++SE Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L ++ G V NL +I + ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G ++++ LA+ Y + I+ ++ + L+ + +GD +AQ++V + +N Sbjct: 509 IRHLGVKVSQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558 Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +I A+ LK+ + I + E K +V TG L ++ R++A +++ Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659 >gi|251809892|ref|ZP_04824365.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis BCM-HMP0060] gi|282874546|ref|ZP_06283431.1| DNA ligase (NAD(+)) [Staphylococcus epidermidis SK135] gi|293367782|ref|ZP_06614431.1| DNA ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|251806557|gb|EES59214.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis BCM-HMP0060] gi|281296685|gb|EFA89194.1| DNA ligase (NAD(+)) [Staphylococcus epidermidis SK135] gi|291318121|gb|EFE58518.1| DNA ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|329734727|gb|EGG71033.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU045] gi|329734798|gb|EGG71103.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU028] Length = 665 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 247/711 (34%), Positives = 395/711 (55%), Gaps = 61/711 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +K + L ++ + YY P + DSEYD L I +P+ ++ P Sbjct: 1 MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GGE S KV H P LSL +N EDLRKF RI + + + E K Sbjct: 60 --VRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDSIGKVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP L + P EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + +E A Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+++ LGF N + + G+++Y + S R +L YDIDG+V KV++ S Q Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V++K+AG++IP+VV I++ R +++ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++++ I+ ADIF L+ ++ G V NL +I K + SLE Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + + + LI + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRH 664 V + +N + +L++++S ++ K + ++EIE K +V TG L+++ R+ Sbjct: 553 VTYLEN----SDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRN 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A E++ GA V+ +++ TDI+I G + GSKL KA++ G +I E F+ Sbjct: 609 EASEWLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFI 659 >gi|300087757|ref|YP_003758279.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527490|gb|ADJ25958.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 687 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 252/720 (35%), Positives = 401/720 (55%), Gaps = 59/720 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++A+K + +L ++I++H+ YY +P I D EYD L R + + FP+LA E P Sbjct: 1 MDEAKKRIDTLRKQITHHNYLYYVKDEPEISDQEYDILFRELQILENEFPELASDESPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 +G + + + ++ H P LSL ++ E+L+ + RI + + ++ F E K Sbjct: 60 --KIVGAKPSKTFSRIKHVKPLLSLANAFSHEELKVWYERIIKSLSPE---TVEFVCEHK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG + + Y +GK V A RGDG +GEDV+ ++ I ++P ++ N+P+ EVRGEV++ Sbjct: 115 IDGLAVAVAYHEGKLVTGATRGDGETGEDVTNNLKTIYSLPHTVADNVPDKFEVRGEVFL 174 Query: 194 SKNDFLALNDEMIAVGRKP-YANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-F 250 ++FL LN +M R P +ANPRNAA+G +R+L+P R L+ F++GLG F Sbjct: 175 PTDNFLRLN-QMRLKQRLPLFANPRNAAAGSVRQLDPNVTAQRPLDIFIYGLGWAEPADF 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A ++ LQK+ +GF +N R +T I SYY E R LPY+ DG+V KV+++S Sbjct: 234 ADNHWDTLQKLGEIGFKINPNNRLCHTLEDIQSYYQEWLGKRDQLPYEADGIVIKVNDYS 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG+ AR PRW I+ KF QA TRL DI I +GRTG L P A LEPV +GG I Sbjct: 294 QQESLGQIAREPRWAIAFKFPAPQAITRLKDIGISVGRTGTLNPFAILEPVKLGGVTIQR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNE+ I+ +DIR+GD+V+V+RAG+VIP++V I+ + A+ FS Sbjct: 354 ATLHNEEDIR-----------RKDIRIGDKVIVQRAGDVIPQIVRPIIEDSSNRAEVFSI 402 Query: 431 PS---------FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 CP+C + V R G+++ + C AC AQ E+L+HFVS+ Sbjct: 403 TEKLKGPDSKPHCPVCNAVVTR----TAGEVM--YYCP-NTACPAQLAEKLEHFVSKSGM 455 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I G+G ++L F +E I+ AD++ L+ T + G + S L S Sbjct: 456 DIRGMG-EKLSTAFLNEG---LIKDVADLYNLK------TEHLVGREGMKEKSAEKLITS 505 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I+ +N L I++LGIRH+GAE A+SLA+ + S A+ LI + Sbjct: 506 ISNSKNRPLHNVIYALGIRHIGAENAQSLAREFGSLSELAKA----------SLERLISI 555 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 P +G IA +++ ++ P N V L + E + + SS I K++V TG+L+ Sbjct: 556 PGIGVKIADSMLNYFSEPHNQKIVSRLNEILETPTMLPANNAQFSSLISGKEVVITGSLK 615 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + RH A E + + G + A ++ KT ++ G+ G+K++KA++ + I++E+ L +++ Sbjct: 616 SMTRHDAWEMIRRAGGIPKADITTKTSYLVAGEKGGTKIKKAKEGKIPIISEDDLLAMVE 675 >gi|302871618|ref|YP_003840254.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47] gi|302574477|gb|ADL42268.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47] Length = 673 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/703 (35%), Positives = 392/703 (55%), Gaps = 49/703 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L I+YHD YY P I D EYD L R + +P+ P+ P + Sbjct: 6 KKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVL---PDSPTQR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ +V H +P LSL ++N +L F R+ D + + +E KIDG Sbjct: 63 VGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTLDFD---YVVEYKIDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG+ GEDV+ ++ I +IP L ++ I VRGEV++ K++ Sbjct: 120 SVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLRLKEDVS--IVVRGEVFMPKDE 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F+ LN E +ANPRNAA+G LR+L+P R L+ FV + + E + E Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNV-QWCEKELETHAE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ +R LGF V+ +++ R LP++IDG V K+++ L+ G Sbjct: 237 ALEFLRHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 E A+SPRW +++KF ++ T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQEKIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCT G+ C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMIVKTLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + N+ FG S NL +I +N L+R I++ Sbjct: 459 RG----LIKTPADIYYLKFED------LVNLERFGVKSTNNLLKAIQASKNRPLDRLIYA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S I+++ + LSL P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEEQLLSL---PDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E LK + +K S ++ V TG L K R++A+E + LGA Sbjct: 559 KQEQTRHLIER-LKAAGVNTVSEKKAKSDILKGYTFVLTGALSKYSRNEAKEILESLGAK 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT +IVG +PGSK KAQQLGVKI+NEE F L++ Sbjct: 618 VTESVSKKTTAVIVGQDPGSKYTKAQQLGVKILNEEDFERLVK 660 >gi|315303635|ref|ZP_07874170.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596] gi|313627998|gb|EFR96596.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596] Length = 678 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 259/720 (35%), Positives = 390/720 (54%), Gaps = 66/720 (9%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ ++ +EL ++ + SY YY P + D+EYD + I A P+ Sbjct: 6 EEMADKKRYEELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLQIEAAHPEWVT-- 60 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P P N++GGE+ KV H P LSL +N +DL F RI + K + + Sbjct: 61 -PESPSNRVGGEVLEGFQKVAHDTPMLSLANAFNKDDLADFDRRI----RDKVGEDVAYM 115 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG ++++YE GK+ A RGDG +GED++A +R I +IP + L IEVRG Sbjct: 116 CELKIDGLAVSLQYENGKYKQGATRGDGTTGEDITANLRTIRSIP--MKLQKSYSIEVRG 173 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTS 247 E ++ K F LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + Sbjct: 174 EAFMPKRSFQKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFG 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ L + LG VN R +T + +Y +E R+ L YDIDG+V K++ Sbjct: 233 EMGVTTHSAGLAMLETLGLKVNKERRLCSTLEEVYAYIDEWTEKRAGLAYDIDGIVLKLN 292 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q+Q+G A+SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G Sbjct: 293 DLEQQRQMGTTAKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVVTPTAVLEPVRVAGTT 352 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+LHNED I +DIR+GD VL+K+AG++IP+V+ I ER D +P Sbjct: 353 VGRASLHNEDLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSIAEERTGDEEP 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P+ CP C S +VR L + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 402 FHMPANCPTCGSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLG 454 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + F I+ AD+F L S K+ + G+ SVTNL SI + + Sbjct: 455 EKVIIQLFTH----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEQSKQ 504 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SLE+ +F LGIRHVGA+ A+SLA Y+ + D +L R+ +G+ Sbjct: 505 NSLEKLLFGLGIRHVGAKAAKSLAIYFETMDKLKLA----------DKETLTRINDIGEK 554 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTL 658 +A +IV ++ N V LL E+ + G ++S E K +V TG L Sbjct: 555 MADSIVTYFANEE----VHNLLDELKRAGVNMTYTGPKLDDMSEEELVFAGKTVVLTGKL 610 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R+ A+ + LG VS +S+KTD+++ G + GSKL KA++L + I +E + L Sbjct: 611 EQLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYL 670 >gi|117927902|ref|YP_872453.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B] gi|166215382|sp|A0LSQ7|DNLJ_ACIC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|117648365|gb|ABK52467.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B] Length = 695 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 254/720 (35%), Positives = 382/720 (53%), Gaps = 53/720 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I A + + AR+ + L +EI H YY P I D+EYDAL R + I +A+P+L Sbjct: 9 IPASAADAARRH-AELVKEIEEHAYRYYVLDAPTISDAEYDALMRELEEIENAYPEL--- 64 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P K+ G V H LSL+ ++ +LR +I R+ +K+ + Sbjct: 65 RTPDSPTQKVQGAPAAHFAPVEHLERMLSLDNVFTEGELRAWIARV----EKEVGTDAAY 120 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIE 186 EPK+DG + + YE G V A RGDG GEDV+A I+AI +P L N+P ++E Sbjct: 121 LCEPKVDGLAVDLVYEDGVLVRGATRGDGRVGEDVTANIKAIRNVPHRLHRDGNLPALLE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 VRGEVY DF LN ++A G+ P+ANPRNAA+G LR+ +P +R L VHG+G Sbjct: 181 VRGEVYFPVADFAELNAGLVAAGKAPFANPRNAAAGSLRQKDPRVTASRPLRLVVHGIGA 240 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + A Q E + G PV+ + A T I+ Y R L ++IDG+V K Sbjct: 241 HQGLAAARQSEAYVALAAWGLPVSERAKVATTTKEILDYIAYYAEHRHDLEHEIDGVVVK 300 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+F+LQ++LG A++PRW +++K+ ++ +T+LLDI + +GRTG +TP A +EPV + G Sbjct: 301 VDQFALQRRLGATAKAPRWAVAYKYPPEEVTTKLLDIQVNVGRTGRVTPFAVMEPVRVAG 360 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + +TNATLHN D IK R G + +GD V+V++AG+VIP+VV +V R Sbjct: 361 STVTNATLHNADEIK---------RKG--VLIGDTVVVRKAGDVIPEVVGPVVALRDGSE 409 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F FPS CP C + +VR+ G + RC +C AQ ERL H SR A +IE Sbjct: 410 REFVFPSHCPACGTPLVRE---NGGVDI---RCPNARSCPAQLRERLFHIASRGALDIES 463 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + + +S+ A D+F L + + G + L +++ Sbjct: 464 LGYEAANALLESKLLADE----GDLFLLTPEKLRTVPFFTKKDGELSANAVKLLENLESA 519 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L R + +L IRHVG AR+LA+ E +I A N L V VG Sbjct: 520 KTRPLWRVLVALSIRHVGPTAARALAR----------EFGSIDAIRNASVDELAAVEGVG 569 Query: 606 DIIAQAI-----VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 +IA++I V+++Q + A + +++ + + +V TGTL + Sbjct: 570 RVIAESIRDWFAVDWHQE------IVAKWSAAGVRMAEEQRSAAKPLAGITVVVTGTLSR 623 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R A E + G + +S+KTD ++VG+NPGSK +KA+QLG+ I++EE F LL + Sbjct: 624 WSRDSAIEAIQDAGGRAAGSVSKKTDFVVVGENPGSKYDKARQLGIPILDEEGFATLLTK 683 >gi|268316781|ref|YP_003290500.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252] gi|262334315|gb|ACY48112.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252] Length = 712 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 254/722 (35%), Positives = 383/722 (53%), Gaps = 54/722 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +EA+ ++A + L + ++ H YY P+I D++YD L + + FP+L Sbjct: 30 LEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV-- 87 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI-- 126 P+ P ++GG KV H P LSL + ED+R + R R ++ + Sbjct: 88 -TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAERLGQPVQP 146 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----- 181 T E KIDG + + YE G A RGDG GE+V+ +R IP IP + ++ Sbjct: 147 AVTAELKIDGLAMALTYENGVLTVGATRGDGIEGENVTQNVRTIPAIPLRIPVDPAVGPP 206 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFV 240 P +EVRGEVY+ K DF LN+++ A G +P+ANPRNAA+G +R+LNP R L+FF Sbjct: 207 PTRLEVRGEVYMRKRDFERLNEQLQARGERPFANPRNAAAGSVRQLNPQVTALRPLSFFA 266 Query: 241 HGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 +G+G QYE+LQ + LGFPVN R+ ++ Y R L Y+I Sbjct: 267 YGIGPVEGAEVPDSQYEVLQWLGRLGFPVNEHARRFEHLDDVLEYCRYWTEHRDELDYEI 326 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V K+D Q LG + +PRW +++KF ++A TRLLDI + +GRTG++ PVA LE Sbjct: 327 DGVVLKIDHRPWQALLGAISNAPRWAVAYKFPAREAITRLLDIMVSVGRTGVVKPVAVLE 386 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ ATLHNEDY++ RDIR+GD V+V RAG+VIP+VV +V Sbjct: 387 PVEVGGVTVSQATLHNEDYVR-----------SRDIRIGDLVVVIRAGDVIPQVVRPVVE 435 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R + +P+ P CP C S++VR VA+ C AQ + L+HF RD Sbjct: 436 ARTGNERPWRMPERCPSCGSQLVRLPGEADYYCVASD-------CPAQFVRLLEHFAGRD 488 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEG+G Q +S +R +D++ + + + GF + NL Sbjct: 489 AMDIEGMGSQVARQLAES----GLVRRLSDLY------RLKLEDLLKLEGFAETRARNLL 538 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I + L R +F LGIRHVG A L + + S I+ + A D+ +L Sbjct: 539 RAIEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFAS-------IDELAAATIDELAAL- 590 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTG 656 VG I A++I +++ N +E LKE+ + R S + K V TG Sbjct: 591 --EGVGPITAESIANWFRVEDNRRLIEE-LKELGVNTQRLPEEAPAAESPVRGKTFVLTG 647 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L + R +A+E + + G V++ +SR TD ++VG+NPGSK ++A+QLG+ +++E+ L Sbjct: 648 ALPHLTRKEAEELIKRAGGRVASSVSRNTDYVVVGENPGSKYDRARQLGIPMLDEDGLLR 707 Query: 717 LL 718 LL Sbjct: 708 LL 709 >gi|315660157|ref|ZP_07913014.1| NAD-dependent DNA ligase LigA [Staphylococcus lugdunensis M23590] gi|315494838|gb|EFU83176.1| NAD-dependent DNA ligase LigA [Staphylococcus lugdunensis M23590] Length = 667 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 252/701 (35%), Positives = 388/701 (55%), Gaps = 56/701 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ ++ P ++G Sbjct: 10 ELHDLLNQYSYE---YYVQDNPSVPDSEYDKLLHELIQIEADHPEYKTTDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N EDL++F RI + + + E KIDG + Sbjct: 64 GEAQSSFEKVRHDTPMLSLGNAFNEEDLKRFDQRI-----RDHIGEVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++YE GKFV RGDG +GED++ +R I IP L L P EVRGE Y+ + F+ Sbjct: 119 SLKYENGKFVQGLTRGDGTTGEDITENLRTIHAIP--LKLKEPLNFEVRGEAYMPRASFM 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 +LN + +P+ANPRNAA+G LR+L+ R L+ F++ + S+ A Q + L Sbjct: 177 SLNKQKEKNNEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFSDFNATTQSDAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF NN + G+++Y + + R +L YDIDG+V KV++ + Q+++G Sbjct: 237 DELDRLGFKTNNERECVSDIDGVLAYIEKWTAKRESLAYDIDGIVIKVNDLAQQEEMGYT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ TRLLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTRLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I+ R DA+ + P+ CP C Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIERRPNDAETYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 ++VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++ E Sbjct: 406 HKLVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQHE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L ++ G V NL +I+K ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLTEEDLLPLERM------GKKKVENLLQAIDKAKSNSLEHLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+GA+ + LA+ Y + I ++ D+ LI + +GD +AQ++V + +N Sbjct: 509 IRHLGAKASYVLAEKY-------ETIERLLTVTEDE---LISIHDIGDKLAQSVVTYLEN 558 Query: 619 PRNICAVEALL-KEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + L K+V+ + + E E ++K +V TG L+++ R +A +++ G Sbjct: 559 EDIQSLISKLANKDVNMTFKGVKISELAGHPEFQDKTIVLTGKLEQMTRKEAADWLQLQG 618 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 A V+ +++ TD++I G++ GSKL KAQ+ G +I +E F+ Sbjct: 619 AKVTNSVTKNTDLVIAGEDAGSKLTKAQKFGTEIWSESDFI 659 >gi|1352292|sp|P49421|DNLJ_RHOMR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|607820|gb|AAA93198.1| DNA ligase [Rhodothermus marinus] Length = 712 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 254/722 (35%), Positives = 383/722 (53%), Gaps = 54/722 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +EA+ ++A + L + ++ H YY P+I D++YD L + + FP+L Sbjct: 30 LEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV-- 87 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI-- 126 P+ P ++GG KV H P LSL + ED+R + R R ++ + Sbjct: 88 -TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAERLGQPVQP 146 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----- 181 T E KIDG + + YE G A RGDG GE+V+ +R IP IP + ++ Sbjct: 147 AVTAELKIDGLAMALTYENGVLSVGATRGDGIEGENVTQNVRTIPAIPLRIPVDPAVGPP 206 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFV 240 P +EVRGEVY+ K DF LN+++ A G +P+ANPRNAA+G +R+LNP R L+FF Sbjct: 207 PTRLEVRGEVYMRKRDFERLNEQLQARGERPFANPRNAAAGSVRQLNPQVTALRPLSFFA 266 Query: 241 HGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 +G+G QYE+LQ + LGFPVN R+ ++ Y R L Y+I Sbjct: 267 YGIGPVEGAEVPDSQYEVLQWLGRLGFPVNEHARRFEHLDDVLEYCRYWTEHRDELDYEI 326 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V K+D Q LG + +PRW +++KF ++A TRLLDI + +GRTG++ PVA LE Sbjct: 327 DGVVLKIDHRPWQALLGAISNAPRWAVAYKFPAREAITRLLDIMVSVGRTGVVKPVAVLE 386 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ ATLHNEDY++ RDIR+GD V+V RAG+VIP+VV +V Sbjct: 387 PVEVGGVTVSQATLHNEDYVR-----------SRDIRIGDLVVVIRAGDVIPQVVRPVVE 435 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R + +P+ P CP C S++VR VA+ C AQ + L+HF RD Sbjct: 436 ARTGNERPWRMPERCPSCGSQLVRLPGEADYYCVASD-------CPAQFVRLLEHFAGRD 488 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEG+G Q +S +R +D++ + + + GF + NL Sbjct: 489 AMDIEGMGSQVARQLAES----GLVRPLSDLY------RLKLEDLLKLEGFAETRARNLL 538 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I + L R +F LGIRHVG A L + + S I+ + A D+ +L Sbjct: 539 RAIEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFAS-------IDELAAATIDELAAL- 590 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTG 656 VG I A++I +++ N +E LKE+ + R S + K V TG Sbjct: 591 --EGVGPITAESIANWFRVEDNRRLIEE-LKELGVNTQRLPEEAPAAESPVRGKTFVLTG 647 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L + R +A+E + + G V++ +SR TD ++VG+NPGSK ++A+QLG+ +++E+ L Sbjct: 648 ALPHLTRKEAEELIKRAGGRVASSVSRNTDYVVVGENPGSKYDRARQLGIPMLDEDGLLR 707 Query: 717 LL 718 LL Sbjct: 708 LL 709 >gi|47569950|ref|ZP_00240615.1| DNA ligase, NAD-dependent [Bacillus cereus G9241] gi|47553396|gb|EAL11782.1| DNA ligase, NAD-dependent [Bacillus cereus G9241] Length = 615 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 243/656 (37%), Positives = 374/656 (57%), Gaps = 55/656 (8%) Query: 68 SEDPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 SED P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ Sbjct: 2 SEDS--PSIRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANV 55 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E Sbjct: 56 RYICELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLE 113 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 RGE Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL Sbjct: 114 ARGEAYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLAN 173 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 E E L + LGF N R T +++Y E + RS L Y+IDG+V K Sbjct: 174 VEEKTIPSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRSHLDYEIDGIVIK 233 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G Sbjct: 234 VDDVALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAG 293 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A+LHNED I+ +DIR+GD V+VK+AG++IP+VV++I ++R + Sbjct: 294 TIVRRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEE 342 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + + P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+G Sbjct: 343 EEYHMPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDG 395 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ + F ++ IR AD+++L + Q + FG+ S TNL +I Sbjct: 396 LGERVITQLFDAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENS 445 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + SLER +F LGIRHVGA+ AR+ A+++ + + + N+ +G Sbjct: 446 KENSLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKAINE----------IG 495 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQ 659 + +AQ++V ++ N ++ + KE ++ +NV S K +V TG L+ Sbjct: 496 EKMAQSVVAYFDN-EDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKTVVLTGKLE 554 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 555 VMGRSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 610 >gi|57867376|ref|YP_189011.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis RP62A] gi|81674000|sp|Q5HN30|DNLJ_STAEQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|57638034|gb|AAW54822.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis RP62A] Length = 665 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 247/711 (34%), Positives = 395/711 (55%), Gaps = 61/711 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +K + L ++ + YY P + DSEYD L I +P+ ++ P Sbjct: 1 MQGVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GGE S KV H P LSL +N EDLRKF RI + + + E K Sbjct: 60 --VRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDSIGKVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP L + P EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + +E A Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+++ LGF N + + G+++Y + S R +L YDIDG+V KV++ S Q Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V++K+AG++IP+VV I++ R +++ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++++ I+ ADIF L+ ++ G V NL +I K + SLE Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + + + LI + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRH 664 V + +N + +L++++S ++ K + ++EIE K +V TG L+++ R+ Sbjct: 553 VTYLEN----SDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRN 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A E++ GA V+ +++ TDI+I G + GSKL KA++ G +I E F+ Sbjct: 609 EASEWLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFI 659 >gi|217964094|ref|YP_002349772.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23] gi|254781360|sp|B8DFG5|DNLJ_LISMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|217333364|gb|ACK39158.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23] gi|307571338|emb|CAR84517.1| DNA ligase, NAD-dependent [Listeria monocytogenes L99] Length = 671 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 258/711 (36%), Positives = 382/711 (53%), Gaps = 66/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N EDL F RI + K + I + E KIDG Sbjct: 62 GGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K F Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L S K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N + ND +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667 N V LL+E+ + G +++S E K +V TG L+K+ R+ A+ Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|290893414|ref|ZP_06556399.1| DNA ligase [Listeria monocytogenes FSL J2-071] gi|290557065|gb|EFD90594.1| DNA ligase [Listeria monocytogenes FSL J2-071] Length = 671 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 258/711 (36%), Positives = 383/711 (53%), Gaps = 66/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N EDL F RI + K + I + E KIDG Sbjct: 62 GGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K F Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +DIR+GD VL+K+AG++IP+V+ I ER + +PF P CP Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGNEEPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L S K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N + ND +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667 N V LL+E+ + G +++S E K +V TG L+K+ R+ A+ Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|296132371|ref|YP_003639618.1| DNA ligase, NAD-dependent [Thermincola sp. JR] gi|296030949|gb|ADG81717.1| DNA ligase, NAD-dependent [Thermincola potens JR] Length = 665 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 243/700 (34%), Positives = 379/700 (54%), Gaps = 47/700 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A K ++ L ++I H+ YY +P I D+EYD L R + +PDL P+ P Sbjct: 6 AAKRINELRKQIEEHNYYYYVLDRPRITDAEYDRLMRELTELEQQYPDLV---TPDSPTQ 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG V H P LSL ++ DL F R+ + + +E KIDG Sbjct: 63 RVGGAPAQGFQSVRHLAPMLSLSNAFSAADLLDFDKRVRNGLAGA---RVEYVVELKIDG 119 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +++ YE G+FV A RGDG GED++ ++ I +IP L ++ E++EVRGE Y+ K Sbjct: 120 LAVSLLYENGRFVRGATRGDGEVGEDITQNLKTIKSIPLRLRQDL-ELLEVRGEAYMPKK 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQ 254 +F +N+ G +ANPRNAA+G LR+L+P R L+ F++ LG + K Sbjct: 179 EFARVNEAREEAGEPLFANPRNAAAGSLRQLDPAVTAERSLDIFLYALGAVQGQAPVKTH 238 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L ++ LGF +N + + ++ Y R LPY+IDG+V KV+ + Q Sbjct: 239 LEGLHLLKDLGFRINPNIVLLPNINEVIDYCQNWTEKRHDLPYEIDGMVIKVNSLAQQAA 298 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++SPRW I++KF +QA T++ I +++GRTG+LTP A LEPV + G+ I++ATLH Sbjct: 299 LGFTSKSPRWAIAYKFPAEQAVTKVKRIYVRVGRTGVLTPTAELEPVRVAGSTISSATLH 358 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED I+ +DIR+GD V++ +AG+VIP++++++ +R Q F P+ C Sbjct: 359 NEDIIR-----------EKDIRIGDTVIIHKAGDVIPEIIEVVKEKRTGQEQEFFMPAEC 407 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C V + G++ A RC C + E L HFVSRDA +IEGLG +D Sbjct: 408 PVCHGPVRK----PAGEV--AVRCVNK-DCPGRGREGLIHFVSRDAMDIEGLGPAVIDQL 460 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 A ++ AD++ L K+E + G SV NL ++I + + L I Sbjct: 461 LT----AGLVKDAADLYYL---NAEDLIKLERM---GKKSVENLLNAIERSKQKDLASLI 510 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIRHVGA + LA ++ S + L +P +G +A++IV Sbjct: 511 FALGIRHVGARAGKILAAHFGSMDRLKEARQE----------ELTAIPEIGPKMAESIVA 560 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++++P ++ +E L + +E K V TG L+K R +AQE + +LG Sbjct: 561 YFRDPAHLRLIERLRGAGVKMTQDIPERGERPLEGKTFVLTGALEKYSRKEAQELIEKLG 620 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 VS+ +S+KTD ++ G +PGSKLEKA+QLG+ +++E+ F Sbjct: 621 GKVSSSVSKKTDYVLAGADPGSKLEKARQLGITVISEDDF 660 >gi|282889962|ref|ZP_06298497.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500155|gb|EFB42439.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 668 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 235/709 (33%), Positives = 400/709 (56%), Gaps = 49/709 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S Q+ +EL + +I H+ YY +P+I D E+D L + + + P+ S P Sbjct: 5 SSHQSYQELCN---QIWSHNKAYYVDHRPVISDEEFDHLMHQLEQMEKEHPEWISSASPT 61 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++G + V H P LSL ++ ++++ FI R+ + + +D + F+ E Sbjct: 62 ---QRVGEMLTEGFQTVAHRTPMLSLANSYSKDEVQDFIHRVKKLTRSQD---VAFSCEL 115 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG I+ ++EKG FV RGDG G+D++ +R + P +++ + P+ +EVRGE+ Sbjct: 116 KMDGIAISAQFEKGIFVRGITRGDGKKGDDITQNLRTVAAFPLQLIGPSAPDFLEVRGEI 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIF 250 ++ K F LN E G +ANPRNAA+G L+ L+P + R L+ +G+G+ S+ Sbjct: 176 FMPKQVFQKLNAEKELEGEDLWANPRNAAAGSLKLLDPNETRRRKLDVVFYGIGQDSQDA 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q+ ++ G P+ + V + +T I + +++++R++LP++IDG+V K+D + Sbjct: 236 LTSQFACHALLKSYGLPILHQVEKCHTLEEIWEFVEKVRTLRASLPFEIDGVVVKLDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 QK+LG ++PRW +++KFA +QA T + I +Q+GRTG+LTPVA L+PV + G+ I Sbjct: 296 EQKRLGSTGKNPRWAVAYKFAAEQAETDIYSITVQVGRTGVLTPVAELKPVFLAGSTIAR 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNE+ +V+R +DIR GD V++++ G+VIPKVV + ++R D+ P+ Sbjct: 356 ATLHNEE---------EVLR--KDIREGDSVIIEKGGDVIPKVVSVNFDKRKSDSHPWKM 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + V R ++ A +C L C QQL RL +F + A +IE +G++ Sbjct: 405 PTHCPSCGALVARSVDE------VAVKCPNTLHCPEQQLRRLIYFAGKFAMDIEHMGEKV 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + F ++ P+DI+ L Q + + GF SV NL SI K +++S Sbjct: 459 VEQLVRL---GF-VKRPSDIYALTSEQ------LFQLEGFKTKSVENLITSIEKSKDVSF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI +LGI+HVG A LAK A ++ ++ ++ L+++ +G+ +A Sbjct: 509 SRFIMALGIKHVGEGTAELLAKR-------AGNVHILMQMTTEE---LLQIEGIGEKVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 AIVE++ + RN ++ LL+ V P + + + K V TGTL++ R A Sbjct: 559 AIVEYFADARNQEEIQLLLQRGVLPQEVKSISHKGHPFDAKTFVLTGTLKQYTRPAAATL 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + G V+ +S KTD ++ G++PGSKL+KA+ L V+I+ EE+F +L Sbjct: 619 IKERGGKVTNSVSSKTDYLLAGEDPGSKLDKAKSLQVRILTEEEFQAML 667 >gi|319655032|ref|ZP_08009103.1| DNA ligase [Bacillus sp. 2_A_57_CT2] gi|317393299|gb|EFV74066.1| DNA ligase [Bacillus sp. 2_A_57_CT2] Length = 668 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 396/712 (55%), Gaps = 57/712 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + ++ A K + L ++ ++ Y+ +P + D+EYD L R + FP+L ++ED Sbjct: 1 MDLQLAEKRVKDLHNLLNQYNYEYHVLDQPSVPDAEYDRLMRDLIELEGQFPEL-KTED- 58 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++GGE+ L +F KV H LSL ++ +DLR F R+ ++ ++ + Sbjct: 59 -SPTQRVGGEI-LDMFEKVEHQSQMLSLGNAFSEQDLRDFDRRV----RQGAGENVSYVC 112 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++RYE G F A RGDG GE+++A ++ I +IP L L +EVRGE Sbjct: 113 ELKIDGLAVSLRYEDGLFTLGATRGDGSIGENITANLKTIRSIP--LRLKESVTMEVRGE 170 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249 ++ + F LN G +P+ANPRNAA+G LR+L+P R L+ FV+G+ + Sbjct: 171 AFMPRRSFEKLNKAKEENGEEPFANPRNAAAGSLRQLDPRLAAKRNLDIFVYGIANVGDT 230 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF N ++ + ++ Y R L YDIDG+V KVD Sbjct: 231 GVVSHSEGLDYLDSLGFKTNKERKRCESIEKVIEYVQGWTDKRPNLSYDIDGIVIKVDSL 290 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG A+SPRW I++KF ++ T L DI++ +GRTG++TP A LEPV + G + Sbjct: 291 ESQEQLGTTAKSPRWAIAYKFPAEEVVTTLRDIELSVGRTGVVTPTALLEPVRVAGTTVQ 350 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DI++GD+V+VK+AG++IP+VV+++ + R + Q F+ Sbjct: 351 RASLHNEDLIR-----------EKDIKIGDQVVVKKAGDIIPEVVNVLADRRTGEEQDFN 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S +VR L+ + A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 400 MPTHCPECESELVR-LDGEV-----ALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEK 452 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + F I+ ADI+ L Q ++ G+ SV NL +I + S Sbjct: 453 VISQLFAEN----LIKDVADIYKLTYEQLIQLERM------GEKSVNNLIQAIENSKGNS 502 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LE+ +F LGIRHVGA+ A++L AQE ++ A +L + +G+ +A Sbjct: 503 LEKLLFGLGIRHVGAKAAKTL----------AQEFGHMEALEKASRDNLTAINEIGEKMA 552 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSE-----IENKKLVFTGTLQKIQR 663 +IV F+ + + A LK ++ + K VS+E K +V TG L+ + R Sbjct: 553 DSIVSFF-DQEEAHELIAELKAAGVNMAYNGPKPVSAENSDSFFAGKTVVLTGKLEIMSR 611 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 ++A+E + LG VS +S+KTD++I G+ GSKL KAQ+LGV++ NEE+ + Sbjct: 612 NEAKEKIEALGGKVSGSVSKKTDVVIAGEEAGSKLTKAQELGVEVWNEERLV 663 >gi|300870442|ref|YP_003785313.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000] gi|300688141|gb|ADK30812.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000] Length = 663 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 246/711 (34%), Positives = 399/711 (56%), Gaps = 56/711 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E+ARK++ L I+YH+ YY P I D EYD L R + + FP+L + + P Sbjct: 1 MNLEEARKKIEQLTATINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKDDSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 NK+GG + K H I SL + N E+ +F R+ ++ + + I +T+E Sbjct: 61 T---NKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLEFDNRM---QKELNASKIKYTVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + + YEKGK A+ RGDG GE+V+ ++ + +P+ S+ + + VRGE Sbjct: 115 NKFDGLALELIYEKGKLTVASTRGDGQVGENVTNNVKMMNNVPK--SIKETKKLIVRGEA 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 I+K DF LN E + P+AN RNAASG LR+L+ ++ R L FF + + + Sbjct: 173 LITKKDFEILNKEREELEEIPFANARNAASGGLRQLDSSESKKRRLKFFAYQIANYKDFD 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +Y+ ++ + LGF V + + +YYN ++ RS + Y+IDGLV KVD+ Sbjct: 233 LTNEYKSMEFLSELGFTVEGVHPNIDAKKVLETYYN-IQEKRSKMDYEIDGLVIKVDDVK 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG +R+PR+ ++ KF ++ T L +I++Q+GRTG LTPVA+LEPV +GG ++N Sbjct: 292 YQEKLGFLSRAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSN 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 TLHN + IK +DIR+GD V+V R+G+VIPK+V +++ +R D++ F F Sbjct: 352 VTLHNPNEIK-----------SKDIRIGDTVVVIRSGDVIPKIVRVVLEKRPSDSKVFEF 400 Query: 431 PSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C V D G ++ RC C ++ +++FVS+ A N+E +GK+ Sbjct: 401 PKKCPVCGGETAVTD-----GDVIV--RCINE-ECPSKITRYIEYFVSKPAMNMERIGKE 452 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRR 546 + F KS ++ PAD++ + R +++ F G+ + + +SI + Sbjct: 453 WIAVFTKSG----LVKTPADLYKITR---------DDLFKFERMGEKLASYMLESIENSK 499 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 N +L+RFI++LGIR VG A LAKY+ S +NF + DD L + +G+ Sbjct: 500 NTTLKRFIYALGIRQVGETTADLLAKYFTSVENFKK-------ATIDD---LQNIEGIGE 549 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I A++I +F N + + ++ LL + V S + K +V TG+++ R A Sbjct: 550 ISAKSIYDFLHNKKTLKLIDDLLDAGVNPVFEKLTTVESPLTGKNVVITGSIEGFTRTSA 609 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +E +LGA V + +S+ TDI+IVG+ GSKL+KAQ+LG++IM + F+ L Sbjct: 610 KETAERLGATVQSAVSKNTDILIVGEKAGSKLKKAQELGIQIMEADDFIKL 660 >gi|312900318|ref|ZP_07759629.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470] gi|311292506|gb|EFQ71062.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470] Length = 676 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 244/713 (34%), Positives = 397/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTL Y+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLTYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ IGRTG++TP A + PV + G + Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVTVWNEQEMV 668 >gi|295397184|ref|ZP_06807287.1| NAD-dependent DNA ligase LigA [Aerococcus viridans ATCC 11563] gi|294974573|gb|EFG50297.1| NAD-dependent DNA ligase LigA [Aerococcus viridans ATCC 11563] Length = 670 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 248/712 (34%), Positives = 397/712 (55%), Gaps = 61/712 (8%) Query: 13 SIEQARKE-LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S + AR E L+ L + +Y YY P I D+EYD L R + +P ++E P Sbjct: 8 STDVARIEALTRLLNDYAYQ---YYALDNPTISDTEYDKLYRELQDLEAKYPTFIQAESP 64 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++G ++ + KVTHS P +SL +N +++ KF+ + +K + + F E Sbjct: 65 T---QRVGDVVSEAFTKVTHSQPMMSLGNAFNFDEVAKFVEDV----KKNVNGQVRFVCE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + I+YE G++V AA RGDG GED++ +R I ++P L +I IEVRGE+ Sbjct: 118 LKIDGLSVAIQYENGRYVRAATRGDGVVGEDITNNVRTIKSVPMKLRQDID--IEVRGEI 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+ K+ FLALN++ G +ANPRN+A+G +R+L+ +R LN F++ + E+ Sbjct: 176 YMPKDAFLALNEKREEAGLPTFANPRNSAAGSIRQLDSKVTASRNLNIFLYSGVFSDELP 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q ++ Q GF VN R TF I +Y EM + R L Y IDG+V KVD+FS Sbjct: 236 IKSQQDLFQHFPDYGFRVNPLTRVCETFEEIQAYIEEMTAKRHELSYGIDGIVIKVDDFS 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG ++P+W I++KF ++ T + DI+ +GRTG++TP A +EPV + G+ + Sbjct: 296 DQETLGYTVKAPKWAIAYKFQAEEVETTIHDIEWTVGRTGVVTPTAIMEPVLLDGSTVQR 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D I+ +DIR+ D V++ +AG++IP+VV +++++R D+ P+ Sbjct: 356 ASLHNMDLIE-----------AKDIRLNDTVVIHKAGDIIPEVVTVVLDKRPEDSTPYPK 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S +V + A RC AC AQ E+L HFVSR+A NI G+G Sbjct: 405 PTTCPVCHSDLVHLEDE------VALRCVNP-ACPAQAKEKLYHFVSRNAMNITGVGPSV 457 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L+ + + + PAD++ +++ Q + KI GD + + +I + SL Sbjct: 458 LEQMYDKAN----VHSPADLYQVKKDQLMALDKI------GDKASDKIIQAIEDSKENSL 507 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ AR +A+ Y S Q I+ D L + +G+ IA Sbjct: 508 ERLLFGLGIRHVGAKAARQIAEVYPSMQ-------EIMTKERTD---LTNIEGIGETIAD 557 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-------NKKLVFTGTLQKIQR 663 +IV F+ ++AL++ + +++ V +E+E K +V TG L + R Sbjct: 558 SIVAFFATDGVRETIDALVE--NGVNMQYKGPVKAEVEAIDSFWSGKTVVLTGKLSQYTR 615 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + +E+ + Sbjct: 616 PEAKKAIEALGGNVTGSVSKKTDILVAGEDAGSKLAKAENLGVTVFSEQDMV 667 >gi|16803798|ref|NP_465283.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes EGD-e] gi|224499523|ref|ZP_03667872.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes Finland 1988] gi|224503316|ref|ZP_03671623.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL R2-561] gi|81508669|sp|Q8Y6D0|DNLJ_LISMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|16411212|emb|CAC99836.1| lmo1758 [Listeria monocytogenes EGD-e] Length = 671 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 257/711 (36%), Positives = 383/711 (53%), Gaps = 66/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N EDL F RI + K + I + E KIDG Sbjct: 62 GGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K F Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R ++ + +Y +E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKKCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L S K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N + ND +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667 N V LL+E+ + G +++S E K +V TG L+K+ R+ A+ Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|258421012|ref|ZP_05683943.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9719] gi|257842960|gb|EEV67378.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9719] Length = 667 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/702 (35%), Positives = 385/702 (54%), Gaps = 58/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +DLRKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVGYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y G FV RGDG +GED++ ++ I IP L + P +EVRGE Y+ + FL Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E L Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q ++G Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I R DA + P+ CP C Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++SE Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L ++ G V NL +I + ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + ++ LA+ Y + I+ ++ + L+ + +GD +AQ++V + +N Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558 Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +I A+ LK+ + I + E K +V TG L ++ R++A +++ Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659 >gi|226310273|ref|YP_002770167.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599] gi|254781268|sp|C0Z4D6|DNLJ_BREBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226093221|dbj|BAH41663.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599] Length = 671 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 249/710 (35%), Positives = 395/710 (55%), Gaps = 54/710 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A ++ L + I H+ Y++ +P I D EYD L R + +FPDL + P+ P Sbjct: 6 AETKIKELAKRIERHNRLYHEEDRPEISDQEYDQLMRELRELETSFPDL---QSPDSPSL 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GGE KV H P LSL +N ED+R F R+ Q ++ + E KIDG Sbjct: 63 RVGGEPLPFFEKVVHKTPMLSLGNAFNEEDIRDFDRRVR---QAVGSQAVRYVAELKIDG 119 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +++ YE G FV A RGDG +GED++ ++ I +IP L L P +EVRGE Y+SK Sbjct: 120 LAVSLHYENGLFVRGATRGDGTTGEDITQNLKTIRSIP--LRLTKPLTLEVRGEAYMSKG 177 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 F LN E G +ANPRN+A+G LR+L+P +R L+ F++G+G + Sbjct: 178 AFEKLNKEREERGEALFANPRNSAAGSLRQLDPKIAASRQLDTFIYGIGDLQGETVESHS 237 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L + LGF VN R + ++++ R LPY+IDG+V KVD ++ Q++L Sbjct: 238 EGLDLLETLGFMVNQERRVFDDVDELLAFIAGWTEKRPHLPYEIDGMVIKVDSYAQQEEL 297 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A T L I++ +GRTG +TP A L+PV++ G + A+LHN Sbjct: 298 GFTAKSPRWAIAYKFPAEEAVTILEGIEVSVGRTGNVTPTALLKPVSLAGTTVKRASLHN 357 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED I+ + + +GD V+VK+AG++IP+++ ++ R + PF+ P+ CP Sbjct: 358 EDIIR-----------EKGLLIGDHVVVKKAGDIIPEIIAVLPERRTGNEVPFAMPTHCP 406 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S +VR L + A RC + C A E + HFVSR A NI+GLG++ + + Sbjct: 407 ECGSELVR-LEEEV-----ALRCINPM-CPALIREGMIHFVSRTAMNIDGLGEKVVAQLY 459 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I AD++ L +Q+ + +E + G+ SV NL +I + SLER +F Sbjct: 460 RD----GIIHSVADLYYLH-QQRDALLGLERM---GEKSVDNLLAAIEASKENSLERVLF 511 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR VGA+ AR LA+++ I+ I+ + ++ + ++ +G +A ++V + Sbjct: 512 GLGIRLVGAKAARVLAEHF-------GNIDTIMQASEEE---ITQIDEIGPKMAASLVNY 561 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTLQKIQRHKAQEY 669 + P+ +E L + + K + E K +V TGTL ++ R +A+E Sbjct: 562 FAQPQAQAVIERLR---AAGVNMEYKGIRIESGADLPFSGKTIVLTGTLTQMSRQEAEEA 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +LG V+ +S+KTD++I G+ GSKLEKA++LGV +M+E FL +L+ Sbjct: 619 IARLGGKVTGSVSKKTDLVIAGEKAGSKLEKAEKLGVAVMDEAGFLQVLE 668 >gi|313632855|gb|EFR99806.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL N1-067] Length = 678 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 259/720 (35%), Positives = 389/720 (54%), Gaps = 66/720 (9%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ ++ +EL ++ + SY YY P + D+EYD + I A P+ Sbjct: 6 EEMADKKRYEELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLQIEAAHPEWIT-- 60 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P P ++GGE+ KV H P LSL +N +DL F RI + K I + Sbjct: 61 -PESPSKRVGGEVLEGFQKVAHDTPMLSLANAFNKDDLADFDRRI----RDKVGEDIAYM 115 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG ++++YEKGK+ A RGDG +GED++A +R I +IP L + IEVRG Sbjct: 116 CELKIDGLAVSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDYS--IEVRG 173 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTS 247 E ++ K F LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + Sbjct: 174 EAFMPKRSFQKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFG 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ + L + LG VN R + +Y +E R+ L YDIDG+V K++ Sbjct: 233 EMGVTTHSDGLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLN 292 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q+Q+G A+SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G Sbjct: 293 DLEQQRQMGTTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTT 352 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ A+LHNED I +DIR+GD VL+K+AG++IP+V+ I ER + +P Sbjct: 353 VSRASLHNEDLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGEEEP 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP C S +VR L + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 402 FHMPKNCPTCGSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLG 454 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + F I+ AD+F L S K+ + G+ SVTNL SI + + Sbjct: 455 EKVIIQLFTH----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEQSKQ 504 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SLE+ +F LGIRHVGA+ A+SLA ++ + N + ND +G+ Sbjct: 505 NSLEKLLFGLGIRHVGAKAAKSLAIHFETMDNLKLADKETLTSIND----------IGEK 554 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTL 658 +A +IV ++ N V LL E+ + G +N+S E K +V TG L Sbjct: 555 MADSIVTYFANEE----VHDLLDELKRANVNMTYTGPKLENMSEEELIFAGKTVVLTGKL 610 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R+ A+ + LG VS +S+KTD+++ G + GSKL KA++L + I +E + L Sbjct: 611 EQLTRNDAKSLIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYL 670 >gi|57650655|ref|YP_186789.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus COL] gi|81694155|sp|Q5HEL8|DNLJ_STAAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|57284841|gb|AAW36935.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus COL] Length = 667 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/702 (35%), Positives = 385/702 (54%), Gaps = 58/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +DLRKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y G FV RGDG +GED++ ++ I IP L + P +EVRGE Y+ + FL Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E L Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q ++G Sbjct: 237 DELNKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I R DA + P+ CP C Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++SE Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L ++ G V NL +I + ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + ++ LA+ Y + I+ ++ + L+ + +GD +AQ++V + +N Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558 Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +I A+ LK+ + I + E K +V TG L ++ R++A +++ Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659 >gi|302333569|gb|ADL23762.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus subsp. aureus JKD6159] Length = 667 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/702 (35%), Positives = 385/702 (54%), Gaps = 58/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +DLRKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y G FV RGDG +GED++ ++ I IP L + P +EVRGE Y+ + FL Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E L Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q ++G Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I R DA + P+ CP C Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++SE Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L ++ G V NL +I + ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + ++ LA+ Y + I+ ++ + L+ + +GD +AQ++V + +N Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558 Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +I A+ LK+ + I + E K +V TG L ++ R++A +++ Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659 >gi|329726878|gb|EGG63336.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU144] Length = 665 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 246/711 (34%), Positives = 395/711 (55%), Gaps = 61/711 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +K + L ++ + YY P + D+EYD L I +P+ ++ P Sbjct: 1 MQDVKKRVGKLHDLLNQYSYEYYVQDNPSVPDNEYDKLLHELIEIEEKYPEFKSTDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GGE S KV H P LSL +N EDLRKF RI + + + E K Sbjct: 60 --VRVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDSIGKVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++YE G+FV RGDG +GED++ +R I IP L + P EVRGE Y+ Sbjct: 113 IDGLAVSLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + F+ LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + +E A Sbjct: 171 PRRSFIHLNNEKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNAT 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+++ LGF N + + G+++Y + S R +L YDIDG+V KV++ S Q Sbjct: 231 TQSEALEELDQLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGYTQKSPRWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I RDIR+GD V++K+AG++IP+VV I++ R +++ + P+ Sbjct: 351 LHNEDLIH-----------ERDIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + Sbjct: 400 HCPSCGHELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIH 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++++ I+ ADIF L+ ++ G V NL +I K + SLE Sbjct: 453 QLYENQ----LIKDVADIFYLKEEDLLPLERM------GKKKVDNLLLAIEKSKEQSLEH 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + + + LI + +GD +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAERYETMDQLFKVTES----------ELIEIQDIGDKLAQSV 552 Query: 613 VEFYQNPRNICAVEALLKEVS-PSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRH 664 V + +N + +L++++S ++ K + ++EIE K +V TG L+++ R+ Sbjct: 553 VTYLEN----SDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTGKLEQMTRN 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A E++ GA V+ +++ TDI+I G + GSKL KA++ G +I E F+ Sbjct: 609 EASEWLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFI 659 >gi|313637419|gb|EFS02883.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL S4-171] Length = 671 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 259/711 (36%), Positives = 383/711 (53%), Gaps = 66/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLQIEEAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N DL F RI + K I + E KIDG Sbjct: 62 GGEVLEGFQKVAHDTPMLSLANAFNKGDLADFDRRI----RDKVGEDIAYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YEKGK+ A RGDG +GED++A +R I +IP L + IEVRGE ++ K F Sbjct: 118 VSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVTTHSD 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R + +Y +E R+ L YDIDG+V K+++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +DIR+GD VL+K+AG++IP+V+ I ER D +PF P CP Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGDEKPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CGSDLVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L S K+ + G+ SVTNL SI + + SLE+ +F Sbjct: 457 H----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEQSKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N + ND +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFETMDNLKLADKETLTSIND----------IGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667 N V LL E+ + G +N+S E K +V TG L+++ R+ A+ Sbjct: 557 ANEE----VHDLLDELKRANVNMTYTGPKLENMSEEELVFAGKTVVLTGKLEQLTRNDAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +E + L Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYL 663 >gi|15924894|ref|NP_372428.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu50] gi|15927478|ref|NP_375011.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus subsp. aureus N315] gi|148268377|ref|YP_001247320.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH9] gi|150394439|ref|YP_001317114.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH1] gi|156980220|ref|YP_001442479.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu3] gi|253316913|ref|ZP_04840126.1| DNA ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006691|ref|ZP_05145292.2| DNA ligase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258408884|ref|ZP_05681166.1| DNA ligase [Staphylococcus aureus A9763] gi|258430016|ref|ZP_05688386.1| DNA ligase [Staphylococcus aureus A9299] gi|258443466|ref|ZP_05691808.1| DNA ligase [Staphylococcus aureus A8115] gi|258445324|ref|ZP_05693515.1| DNA ligase [Staphylococcus aureus A6300] gi|258447888|ref|ZP_05696022.1| DNA ligase [Staphylococcus aureus A6224] gi|258453321|ref|ZP_05701306.1| DNA ligase [Staphylococcus aureus A5937] gi|269203557|ref|YP_003282826.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus ED98] gi|282894571|ref|ZP_06302799.1| DNA ligase, NAD-dependent [Staphylococcus aureus A8117] gi|282928077|ref|ZP_06335684.1| DNA ligase, NAD-dependent [Staphylococcus aureus A10102] gi|295407285|ref|ZP_06817084.1| DNA ligase [Staphylococcus aureus A8819] gi|296275664|ref|ZP_06858171.1| DNA ligase [Staphylococcus aureus subsp. aureus MR1] gi|297246190|ref|ZP_06930041.1| DNA ligase [Staphylococcus aureus A8796] gi|81705420|sp|Q7A4Q5|DNLJ_STAAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81781309|sp|Q99SY3|DNLJ_STAAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216246|sp|A7X432|DNLJ_STAA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359291|sp|A6U309|DNLJ_STAA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359292|sp|A5IU71|DNLJ_STAA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|13701697|dbj|BAB42990.1| DNA ligase [Staphylococcus aureus subsp. aureus N315] gi|14247676|dbj|BAB58066.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu50] gi|147741446|gb|ABQ49744.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH9] gi|149946891|gb|ABR52827.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH1] gi|156722355|dbj|BAF78772.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu3] gi|257840331|gb|EEV64793.1| DNA ligase [Staphylococcus aureus A9763] gi|257849610|gb|EEV73578.1| DNA ligase [Staphylococcus aureus A9299] gi|257851351|gb|EEV75291.1| DNA ligase [Staphylococcus aureus A8115] gi|257855842|gb|EEV78766.1| DNA ligase [Staphylococcus aureus A6300] gi|257858820|gb|EEV81689.1| DNA ligase [Staphylococcus aureus A6224] gi|257864529|gb|EEV87272.1| DNA ligase [Staphylococcus aureus A5937] gi|262075847|gb|ACY11820.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus ED98] gi|282590141|gb|EFB95222.1| DNA ligase, NAD-dependent [Staphylococcus aureus A10102] gi|282763058|gb|EFC03190.1| DNA ligase, NAD-dependent [Staphylococcus aureus A8117] gi|285817585|gb|ADC38072.1| DNA ligase [Staphylococcus aureus 04-02981] gi|294967860|gb|EFG43890.1| DNA ligase [Staphylococcus aureus A8819] gi|297176897|gb|EFH36154.1| DNA ligase [Staphylococcus aureus A8796] gi|312830277|emb|CBX35119.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129286|gb|EFT85280.1| DNA ligase [Staphylococcus aureus subsp. aureus CGS03] gi|329724802|gb|EGG61306.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21172] Length = 667 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/702 (35%), Positives = 385/702 (54%), Gaps = 58/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +DLRKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y G FV RGDG +GED++ ++ I IP L + P +EVRGE Y+ + FL Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E L Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q ++G Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I R DA + P+ CP C Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++SE Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L ++ G V NL +I + ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + ++ LA+ Y + I+ ++ + L+ + +GD +AQ++V + +N Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558 Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +I A+ LK+ + I + E K +V TG L ++ R++A +++ Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659 >gi|258510685|ref|YP_003184119.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477411|gb|ACV57730.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 684 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 249/723 (34%), Positives = 389/723 (53%), Gaps = 64/723 (8%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ALS+E+AR L ++I YH+ YY P I D+E+DAL R + +P+L D Sbjct: 9 ALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELV---D 65 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P P ++G KV H +P LSL ++ EDL + R+ ++ + + + Sbjct: 66 PASPTQRVGAPALEGFAKVVHEVPMLSLANAYSTEDLLDWDRRV----RQAVGDDVRYVC 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + +RY+ G+ V A RGDG GED++A IR I +P L L+ P +EVRGE Sbjct: 122 ELKVDGLAVALRYQDGRLVLGATRGDGSVGEDITANIRTIRNVP--LELSEPVSLEVRGE 179 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K +F+ LN+ G +ANPRNAA+G LR+L+P +R L V+ L + Sbjct: 180 AYMPKREFMRLNELREQQGEPLFANPRNAAAGSLRQLDPAVAASRRLGVIVYQLVRAEAH 239 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + L + LG P + +++Y R LPY DG+V KVD Sbjct: 240 GCETHSQALDYVARLGLPAHRERHVCANIEDVIAYIEAWADKRHELPYATDGMVVKVDSL 299 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ +LG A+SPRW I++K+A +QA T L I++ +GRTG++TP A +PV + G ++ Sbjct: 300 ALQARLGATAKSPRWAIAYKYAAEQAETTLRAIELNVGRTGVVTPTAVFDPVQLAGTTVS 359 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED ++ +DIRVGD ++V++AG++IP+V+ + R F Sbjct: 360 RASLHNEDLVR-----------EKDIRVGDVIVVQKAGDIIPEVIRSLPERRTEPLPEFR 408 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C SR+VR L+ + A RC C A E L HF SRDA NIEGLG+Q Sbjct: 409 MPETCPQCGSRLVR-LDGEV-----AWRCINP-DCPALLREGLIHFCSRDAMNIEGLGEQ 461 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + D +R AD++ L++ ++ GD L +I + + S Sbjct: 462 WITVLL---DRGL-VRTHADLYRLRKADLVQLDRM------GDKLADKLLHNIQESKRNS 511 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVG + A++LA+++++ I+ +++ + +D L+ VP +G +A Sbjct: 512 LERLLFGLGIRHVGEKAAKTLAEHFVT-------IDALMSASEED---LMAVPDIGPKVA 561 Query: 610 QAIVEFYQNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 Q+I +++ PR V L++E V+ + +K + K +V TG LQ R Sbjct: 562 QSIRQYFDTPR----VRQLIQELKDLGVNMTYLGPQKVSDGPLAGKTVVLTGVLQAADRK 617 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFL 717 +A ++ Q+G V++ +S KTD++I GD GSKL KAQ++ ++I +E FL L Sbjct: 618 QATAWIEQMGGKVASSVSAKTDVLIAGDKAGSKLAKAQEILRNHPDAKLEIWDEAAFLRL 677 Query: 718 LQQ 720 + + Sbjct: 678 VDE 680 >gi|21283574|ref|NP_646662.1| DNA ligase [Staphylococcus aureus subsp. aureus MW2] gi|49486723|ref|YP_043944.1| DNA ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|87161485|ref|YP_494537.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195803|ref|YP_500613.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222054|ref|YP_001332876.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus str. Newman] gi|161510127|ref|YP_001575786.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140357|ref|ZP_03564850.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253734986|ref|ZP_04869151.1| DNA ligase [Staphylococcus aureus subsp. aureus TCH130] gi|258451030|ref|ZP_05699066.1| DNA ligase, NAD-dependent [Staphylococcus aureus A5948] gi|282923243|ref|ZP_06330924.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9765] gi|284024951|ref|ZP_06379349.1| DNA ligase [Staphylococcus aureus subsp. aureus 132] gi|294849453|ref|ZP_06790195.1| DNA ligase [Staphylococcus aureus A9754] gi|297208934|ref|ZP_06925338.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300913009|ref|ZP_07130447.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus TCH70] gi|304379092|ref|ZP_07361839.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|75410712|sp|Q9AIU7|DNLJ_STAAU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81649030|sp|Q6G829|DNLJ_STAAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81704301|sp|Q7A0H1|DNLJ_STAAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123098079|sp|Q2G1Y0|DNLJ_STAA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123749595|sp|Q2FFJ1|DNLJ_STAA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359293|sp|A6QID2|DNLJ_STAAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359294|sp|A8Z2R8|DNLJ_STAAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|13182984|gb|AAK15020.1| DNA ligase [Staphylococcus aureus] gi|21205015|dbj|BAB95710.1| DNA ligase [Staphylococcus aureus subsp. aureus MW2] gi|49245166|emb|CAG43632.1| DNA ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|87127459|gb|ABD21973.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203361|gb|ABD31171.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374854|dbj|BAF68114.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus str. Newman] gi|160368936|gb|ABX29907.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253727168|gb|EES95897.1| DNA ligase [Staphylococcus aureus subsp. aureus TCH130] gi|257861272|gb|EEV84084.1| DNA ligase, NAD-dependent [Staphylococcus aureus A5948] gi|269941376|emb|CBI49773.1| DNA ligase [Staphylococcus aureus subsp. aureus TW20] gi|282593154|gb|EFB98153.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9765] gi|294823590|gb|EFG40017.1| DNA ligase [Staphylococcus aureus A9754] gi|296886424|gb|EFH25353.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|298695246|gb|ADI98468.1| DNA ligase [Staphylococcus aureus subsp. aureus ED133] gi|300885787|gb|EFK80994.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus TCH70] gi|302751777|gb|ADL65954.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342327|gb|EFM08219.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320139715|gb|EFW31584.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus MRSA131] gi|320142368|gb|EFW34182.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus MRSA177] gi|323439848|gb|EGA97564.1| DNA ligase [Staphylococcus aureus O11] gi|323443011|gb|EGB00632.1| DNA ligase [Staphylococcus aureus O46] gi|329314581|gb|AEB88994.1| DNA ligase [Staphylococcus aureus subsp. aureus T0131] gi|329728576|gb|EGG65006.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21189] gi|329731482|gb|EGG67845.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21193] Length = 667 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/702 (35%), Positives = 385/702 (54%), Gaps = 58/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +DLRKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y G FV RGDG +GED++ ++ I IP L + P +EVRGE Y+ + FL Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E L Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q ++G Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I R DA + P+ CP C Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++SE Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L ++ G V NL +I + ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + ++ LA+ Y + I+ ++ + L+ + +GD +AQ++V + +N Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558 Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +I A+ LK+ + I + E K +V TG L ++ R++A +++ Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659 >gi|47095684|ref|ZP_00233291.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854] gi|254900737|ref|ZP_05260661.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes J0161] gi|254913778|ref|ZP_05263790.1| DNA ligase [Listeria monocytogenes J2818] gi|254938165|ref|ZP_05269862.1| DNA ligase [Listeria monocytogenes F6900] gi|284802202|ref|YP_003414067.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578] gi|284995344|ref|YP_003417112.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923] gi|47015969|gb|EAL06895.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854] gi|258610778|gb|EEW23386.1| DNA ligase [Listeria monocytogenes F6900] gi|284057764|gb|ADB68705.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578] gi|284060811|gb|ADB71750.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923] gi|293591794|gb|EFG00129.1| DNA ligase [Listeria monocytogenes J2818] Length = 671 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 257/711 (36%), Positives = 383/711 (53%), Gaps = 66/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N EDL F RI + K + I + E KIDG Sbjct: 62 GGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K F Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R ++ + +Y +E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L S K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N + ND +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667 N V LL+E+ + G +++S E K +V TG L+K+ R+ A+ Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|282919739|ref|ZP_06327471.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus C427] gi|282316377|gb|EFB46754.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus C427] Length = 667 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/702 (35%), Positives = 386/702 (54%), Gaps = 58/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTVDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +DLRKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y G FV RGDG +GED++ ++ I IP L + P +EVRGE Y+ + FL Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKDPLNVEVRGEAYMPRRSFL 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E L Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + + G++ Y + S R +LPYDIDG+V KV++ Q ++G Sbjct: 237 DELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I R DA + P+ CP C Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++SE Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L ++ G V NL +I + ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + ++ LA+ Y + I+ ++ + L+ + +GD +AQ++V + +N Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558 Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +I A+ LK+ + I + E K +V TG L ++ R++A +++ Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA V++ +++ TD++IVG++ GSKL KAQ LG++I E+QF+ Sbjct: 618 GAKVTSSVTKNTDVVIVGEDAGSKLTKAQSLGIEIWTEQQFV 659 >gi|78357136|ref|YP_388585.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123768784|sp|Q30ZK6|DNLJ_DESDG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78219541|gb|ABB38890.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 705 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/724 (34%), Positives = 402/724 (55%), Gaps = 72/724 (9%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ++ +EQ +EL +L + YH YY +P I D+EYDAL R + P+ Sbjct: 11 DSAKVEQRMEELRTL---LEYHGHRYYVMDEPEISDAEYDALFRELVRLEEEHPEHIH-- 65 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P P +K+GG++ L HS+ SL+ + IE+ R+F+ R+ R + D + F Sbjct: 66 -PGSPTHKVGGQILDGLKPREHSLRMYSLDNAFGIEEFREFVERVVRL---EPDAPLEFW 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI--PEIIEV 187 ++PK+DG + + YE G F+ A RGDG GEDV+ +R + + L+ I P +EV Sbjct: 122 VDPKMDGLAMELVYENGVFLLAVTRGDGSMGEDVTHTMRTVRNVRMRLNPEIEAPVRLEV 181 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEV I++ DF ALN G K +ANPRNAA+G +R+L+ + R L F +G+G+ Sbjct: 182 RGEVIITRADFEALNARQQQKGGKLFANPRNAAAGSVRQLDSSVAAARPLRFMAYGVGQV 241 Query: 247 SEIFAKG------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 ++A G QY++++ ++ LGF V + R + + + E+ + R LP++ID Sbjct: 242 --VWADGRQRWRTQYDIMRGLQELGFAVPSQGRLCAAPADVEAAFTELSAARHELPFEID 299 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K+++ LQ+ LG AR+PRW I+ KF QA TRL DI IQ+GRTG++TPVA LEP Sbjct: 300 GVVAKLNDLDLQEALGFTARAPRWAIALKFPAHQARTRLKDIRIQVGRTGVMTPVAELEP 359 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GG +++ATLHNED I+ + + +GD V+V+RAG+VIP+VV + E Sbjct: 360 VTVGGVTVSSATLHNEDEIR-----------AKGLMLGDVVIVQRAGDVIPEVVRAVPEE 408 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R + + FP+ CP+C S VR G+ AA RCT + C A + + + HFVS+ Sbjct: 409 RTGAEREYVFPAVCPVCGSAAVR------GEGEAAWRCT-NMQCPAVRKQAIIHFVSKAG 461 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG---FGDVSVTN 537 +I+G+G++ ++ S + PAD+F + R E++LG G+ +N Sbjct: 462 LDIDGVGRKWIEQLVDS----GRVVSPADLFRITR---------EDLLGMERMGEKLASN 508 Query: 538 LYDSINKRRNIS-LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 ++ + R+ S L+RFI +LGIRHVG + AR+LA + + + + D Sbjct: 509 FIEAFDSARHESTLQRFICALGIRHVGEQTARTLAARFGNMDELMRADQETLQSLRD--- 565 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENKK 651 +G +A +I F+ N +N ++ L E G + + + KK Sbjct: 566 -------IGGEVAGSIRAFFANGQNRELLQQFKNLGLWPEEQQPAG--DSTPVTPLAGKK 616 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 ++FTG+L ++ R +A+ + GA V + +S + DI++ GD PGSKLEKA+ LG+ ++ E Sbjct: 617 ILFTGSLVRMTRSEAKAMAEKAGAAVMSGVSARLDILVAGDKPGSKLEKARSLGITVLTE 676 Query: 712 EQFL 715 ++F+ Sbjct: 677 DEFI 680 >gi|20807100|ref|NP_622271.1| NAD-dependent DNA ligase [Thermoanaerobacter tengcongensis MB4] gi|81482513|sp|Q8RC42|DNLJ_THETN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|20515592|gb|AAM23875.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Thermoanaerobacter tengcongensis MB4] Length = 666 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 257/707 (36%), Positives = 397/707 (56%), Gaps = 51/707 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+ARK + L ++I+YH+ YY +P I D EYD L R + +P+ + P+ P Sbjct: 4 EEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---KTPDSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE TH +P LSL + E++++F R+ K+ + + +EPKI Sbjct: 61 SQRVGGEPLDEFEPFTHIVPMLSLANAFTAEEIKEFDRRV-----KEAVGEVEYVVEPKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + + YE G F + RGDG GE+V+ ++ I +IP L ++ + VRGEV++ Sbjct: 116 DGLSVELVYENGMFTVGSTRGDGIVGENVTPNLKTIKSIPLRLKDSVNLV--VRGEVFMP 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K F LN+E G +ANPRNAA+G +R+L+P R L+ F+ L + K Sbjct: 174 KASFAKLNEERAERGESLFANPRNAAAGSVRQLDPKVTAKRDLDIFIFNLQRIEGRDFKT 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L+ ++ GF V +++ T ++ E+ ++ +LPYDIDG V KV+E ++ Sbjct: 234 HVEALEFLKEQGFKVIPLIKKCTTIEEVIKAIEELGEMKDSLPYDIDGAVIKVNELDKRE 293 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG+ A+ RW I+ K+ + T+++DI +Q+GRTG LTP A LEPV I G++++ ATL Sbjct: 294 ILGQTAKDYRWAIAFKYPAEMKKTKIVDIVVQVGRTGALTPTAVLEPVVISGSVVSRATL 353 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNEDYIK +DIR+GD VLV +AG +IP+VV+++ ER D + F P Sbjct: 354 HNEDYIK-----------EKDIRIGDTVLVHKAGGIIPEVVEVVKEERTGDEKAFVMPDK 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + VR G+ A RCT GL C AQ R+ HF S+DA +IEGLG + Sbjct: 403 CPECGALAVR----LPGE--AVRRCT-GLNCPAQIARRIIHFASKDAMDIEGLGPAIISQ 455 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 I+ AD++ L+ R + ++ GD S NL ++I K + L+R Sbjct: 456 LLSKG----LIQNVADLYYLKYRDLITLERM------GDKSARNLLEAIEKSKKRDLDRL 505 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGI +G++ A+ +A+++ S ++NI+ +D+L L P +G +A++IV Sbjct: 506 LFGLGINLIGSKAAQVIAEHFKS-------MDNIMKAKYEDFLEL---PDIGPKMARSIV 555 Query: 614 EFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ +N VE LKE ++ + VS+ E K V TG L+ R +A + + Sbjct: 556 TFFSEEQNRRVVER-LKEAGVNMEKLSTGKVSNIFEGKIFVLTGALKNYTRDEAARLIVE 614 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ +S+KTD +IVG +PGSKL+KAQ+LGVKI+NEEQF +L+ Sbjct: 615 RGGKVTNSVSKKTDYLIVGADPGSKLKKAQELGVKIINEEQFEAMLK 661 >gi|312622179|ref|YP_004023792.1| DNA ligase, nad-dependent [Caldicellulosiruptor kronotskyensis 2002] gi|312202646|gb|ADQ45973.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kronotskyensis 2002] Length = 673 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 249/703 (35%), Positives = 392/703 (55%), Gaps = 49/703 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L I+YHD YY P I D EYD L R + +P+ P+ P + Sbjct: 6 KKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ +V H +P LSL ++N +L F R+ + + + +E KIDG Sbjct: 63 VGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFD---YVVEYKIDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G F+ A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K++ Sbjct: 120 SVALEYENGLFIRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKDE 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F+ LN E +ANPRNAA+G LR+L+P R L+ FV + + E + E Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPRITAQRKLDIFVFNV-QWCEKELETHAE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ LGF V+ +++ R LP++IDG V K+++ L+ G Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 E A+SPRW +++KF ++ T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCT G+ C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + N+ FG S NL +I +N L+R I++ Sbjct: 459 KG----LIKTPADIYYLKFED------LVNLERFGVKSTNNLLKAIQASKNRPLDRLIYA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S I+++ + LSL P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEEQLLSL---PDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E LK + +K S ++ V TG L K R++A+E + LGA Sbjct: 559 RQDQTKHLIER-LKAAGVNTVSEKKAKSDILKGYTFVLTGALSKYSRNEAKEILESLGAK 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT +IVG +PGSK KAQQLGVKI+NEE F L++ Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660 >gi|297616809|ref|YP_003701968.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680] gi|297144646|gb|ADI01403.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680] Length = 668 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 248/710 (34%), Positives = 385/710 (54%), Gaps = 53/710 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E R+ L +EI HD YY +P+I D+EYD L R + A+PDL P+ Sbjct: 1 METPRERAEKLREEIRKHDYHYYVLDQPLISDAEYDRLFRELVELEQAYPDLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GGE+ V H +P LSL+ +N +LR F R+ ++ D ++ + E K Sbjct: 58 PTQRVGGEVLKGFTPVQHRVPLLSLDNAFNERELRDFNRRLK---ERLGDEAVAYVCELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I + Y+ G + A RGDG GEDV+A IR I ++P L+ +P + EVRGEVY+ Sbjct: 115 IDGVSIALVYQDGVLMSGATRGDGIVGEDVTANIRTIKSLPLRLTYPLPRV-EVRGEVYM 173 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 K F LN E G K +ANPRNAA+G +R+L+P R L V+ + Sbjct: 174 PKEAFARLNREREDRGEKTFANPRNAAAGSIRQLDPKVTAGRTLGLLVYDILHLEGKEID 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+ + LGFPV+ R + ++ Y E + R LPY+IDG+V K++ + Sbjct: 234 SQRETLEFLSELGFPVDRNFRWCASLDEVLEYCEEWQGRRHELPYEIDGVVVKLNSLPAR 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG A+SPRW I++KF ++ T+++ I++ +GRTG++TP A +EPV++ G ++ A+ Sbjct: 294 QLLGATAKSPRWAIAYKFPAEEKETKIVAIELNVGRTGVITPTAVMEPVSLAGTTVSRAS 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ +DIRVGD V+V +AG++IP+VV + +R F P Sbjct: 354 LHNYDLIR-----------EKDIRVGDMVVVHKAGDIIPEVVRSLPEKRTGKEIEFKMPD 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C SRVVR +G++ A+RC + C A+ E L F SR+A +IEGLG ++ Sbjct: 403 KCPACGSRVVR----FSGEV--AYRCD-NINCPARLKESLIFFASREAMDIEGLGPALVE 455 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 D + AD++ L+ + ++ G S NL ++ + + L R Sbjct: 456 QLV---DRGMVSNV-ADLYYLRAEELAGLERM------GQKSAANLIRALEQSKGRPLHR 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + +LGIR+VG + AR LA++Y + F+ + D L+ +P +G+ IA+++ Sbjct: 506 LLNALGIRYVGLKTARILAEHYRDIERFS----------DIDREELMSIPEIGEKIAESV 555 Query: 613 VEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 F+ PRN ++ L K V P + S+ K V TG L+ + R++A + Sbjct: 556 TAFFAEPRNWDSIHKLKKAGVNTVEPEFSMAQ---DSQFAGKTFVLTGALESMTRNEATK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G V+ +SRKTD ++ G +PGSK +KA LGV +++E QFL LL Sbjct: 613 AIEDRGGKVTNSVSRKTDFVVAGRDPGSKYDKAVALGVTVLDENQFLQLL 662 >gi|261854791|ref|YP_003262074.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2] gi|261835260|gb|ACX95027.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2] Length = 685 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 263/714 (36%), Positives = 384/714 (53%), Gaps = 60/714 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R L +L EI H+ YY P I D+ +D L R I A P+ P+ P + Sbjct: 18 RARLLALRDEIERHNFRYYVLDDPEISDAAFDRLMRELQQIESAHPEWI---TPDSPTQR 74 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G + F VTH LSL+ ++++E+ F RI + K D + F EPK DG Sbjct: 75 VGSPTFTTRFAPVTHHQAMLSLDNVFSVEEWDAFTQRIQD--RLKRDAPLVFAAEPKFDG 132 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEVYIS 194 I + Y +G+ V AA RGDG +GEDV+ +R I IP+ L SL +++EVRGE+ +S Sbjct: 133 LAINLIYRQGQLVQAATRGDGQTGEDVTLNVRTIAAIPQQLPDSLLSCDLLEVRGEIVMS 192 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAK 252 F ALN A G K + NPRNAA+G LR+ +P R L FF +G+G Sbjct: 193 HKAFAALNAAADARGDKRFVNPRNAAAGSLRQKDPRITAKRQLQFFAYGVGAVDGADLPD 252 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q +L + LGF V+ R+ +++Y EM + RS L YDIDG+V+K++ S Q Sbjct: 253 SQLGLLDWLADLGFTVSEWRRRCEGRDEVLAYQQEMSARRSQLDYDIDGVVFKINAQSEQ 312 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG A++PRW I+ KF ++A++R+ +D Q+GRTG LTPVAR++PV +GG ++N T Sbjct: 313 DALGFVAKAPRWAIAFKFPAEEATSRVHAVDFQVGRTGALTPVARIDPVFVGGVTVSNIT 372 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I +DIR+GD V+V+RAG+VIP+VV ++ R DA+ + P+ Sbjct: 373 LHNIDEIT-----------RKDIRIGDTVVVRRAGDVIPEVVRVLPELRPADARLVALPA 421 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S VVR G+ +A RC+GGL C AQ+ E +KHF SR A NI+GLG++ ++ Sbjct: 422 TCPVCGSEVVR----AEGEAIA--RCSGGLFCPAQRREAIKHFASRKAMNIDGLGEKWIE 475 Query: 493 FFFKSE-----DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + D F + +P + TL R G+ S NL D+++ + Sbjct: 476 LLLEHKLVEHVDDLFHLTVP-QVLTLPR--------------MGEKSAQNLVDALSAAKQ 520 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RF+++LGIR VG A LA ++ N+ A N L VP VG + Sbjct: 521 TTLPRFLYALGIREVGEVTAAGLAAHF----------RNLDALNAATLEDLQAVPDVGPV 570 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +AQ + F + P N + L+ P+I + N + + + V TGTL + R + Sbjct: 571 VAQHVFTFLRQPHNQEVIRNLIDAGVHWPAIVATDAN-ALPLAGRTYVLTGTLVGMSREE 629 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A E + LGA VS +S KT +I G GSKL KA LGV +++E LL+ Sbjct: 630 AGERLKALGAKVSGSVSSKTTAVIAGSEAGSKLTKANDLGVPVLDETDLQKLLR 683 >gi|332525978|ref|ZP_08402119.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2] gi|332109529|gb|EGJ10452.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2] Length = 686 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 252/718 (35%), Positives = 385/718 (53%), Gaps = 51/718 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S A + + L + +S+H YY P I D+EYD L + AI PDL P Sbjct: 1 MSPTSAAERAAELRRILSHHAHRYYVLDAPEIPDAEYDRLFQELQAIESEHPDLL---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKDDNS-IFF 128 + P +I G++ L V H++ LS+ E F R+ R + DD + + Sbjct: 58 DSPTQRIIGQVLPGLVPVRHAVAMLSIRTETDTTAAGAEAFDARVRRELELGDDAPPVEY 117 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E K DG I +RY G V AA RGDG +GEDV+ IR I IP L P ++EVR Sbjct: 118 AAELKFDGLAINLRYVAGLLVQAATRGDGETGEDVTHNIRTIGQIPLRLFGTAPPVLEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247 GEVY+ ++DF LN+ G K + NPRN A+G +R+L+ + + L+F+ +GLG+ Sbjct: 178 GEVYMRRDDFERLNERQREKGAKTFINPRNTAAGAVRQLDSRSLADKRLSFYAYGLGEVQ 237 Query: 248 EIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + L + G PVN G+V+++ + + R LP+DIDG+VYKV Sbjct: 238 GWEQPPTHSGTLDALAAFGLPVNGERAVVQGADGLVAFHRRIAAARDALPFDIDGVVYKV 297 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQK+LG R PRW ++HK+ ++ TRL I+IQ+GRTG LTPVA+LEPV +GG Sbjct: 298 NDIALQKRLGFVTREPRWAVAHKYPAQEQMTRLNAIEIQVGRTGKLTPVAKLEPVFVGGT 357 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN ++ R G +RVGD V+V+RAG+VIP+VV + ER Sbjct: 358 TVSNATLHNLFELR---------RKG--VRVGDDVIVRRAGDVIPEVVGRVPGERAGYVP 406 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P CP+C S V R+ HRC+GGL C+AQ+ + L HF R A +IEGL Sbjct: 407 NFRMPRQCPVCGSAVARERGGID------HRCSGGLFCAAQRKQALLHFAGRRAMDIEGL 460 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D IR +++TL K+ + + S NL ++++ + Sbjct: 461 GDKLVDQLVDG----GLIRTLPELYTL------GVAKLSALERMAEKSAANLVAALDRSK 510 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RF+++LGIR VG A+ LA+++ ++ ++ + + L+ V VG Sbjct: 511 QTTLARFLYALGIRQVGEATAKDLARHFGG-------LDRVMDASVE---QLLEVRDVGP 560 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-----KNVSSEIENKKLVFTGTLQKI 661 I+AQ+I F++ P N VE L+ HE + + K LV TGTL + Sbjct: 561 IVAQSIRTFFEQPHNREVVEQ-LRAAGIRWDEHEGAAVANAAALPLAGKTLVLTGTLPTL 619 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+E + G V+ +S+KT ++ G+ GSKL+KA++LG+++++E+ LLQ Sbjct: 620 SREQAKEMIEAAGGKVAGSVSKKTHYVVAGEEAGSKLDKARELGIEVLDEDGLRRLLQ 677 >gi|254829489|ref|ZP_05234176.1| DNA ligase [Listeria monocytogenes FSL N3-165] gi|258601904|gb|EEW15229.1| DNA ligase [Listeria monocytogenes FSL N3-165] Length = 671 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 255/710 (35%), Positives = 381/710 (53%), Gaps = 64/710 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N EDL F RI + K + I + E KIDG Sbjct: 62 GGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K F Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAG 235 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L + LG VN R ++ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 236 LDMLETLGLKVNKERRLCSSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGT 295 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNED Sbjct: 296 TVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNED 355 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP C Sbjct: 356 LIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPTC 404 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 405 DSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQ 457 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I+ AD+F L S K+ + G+ SVTNL SI + SLE+ +F L Sbjct: 458 ----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFGL 507 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA+ A+SLA ++ + N + + ND +G+ +A +IV ++ Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKVADKETLTNIND----------IGEKMADSIVTYFA 557 Query: 618 NPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQE 668 N V LL+E+ + G +++S E K +V TG L+K+ R+ A+ Sbjct: 558 NEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKA 613 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 614 LIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|312793814|ref|YP_004026737.1| DNA ligase, nad-dependent [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180954|gb|ADQ41124.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kristjanssonii 177R1B] Length = 673 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 250/703 (35%), Positives = 391/703 (55%), Gaps = 49/703 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L I+YHD YY P I D EYD L R + +P+ P+ P + Sbjct: 6 KKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ +V H +P LSL ++N +L F R+ + + + +E KIDG Sbjct: 63 VGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFD---YVVEYKIDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K++ Sbjct: 120 SVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKDE 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F+ LN E +ANPRNAA+G LR+L+P R L+ FV + + E + E Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNV-QWCEKEIETHAE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ LGF V+ +++ R LP++IDG V K+++ L+ G Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW +++KF ++ T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 ATAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCT G+ C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + N+ FG S NL +I +N L+R I++ Sbjct: 459 RG----LIKTPADIYYLKFED------LVNLERFGVKSTNNLLKAIQASKNRPLDRLIYA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S I+++ D LSL P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEDQLLSL---PDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E LK + +K S ++ V TG L K R++A+E + LGA Sbjct: 559 RQEQTRHLIER-LKAAGVNTVSEKKAKSDILKGYTFVLTGALSKYSRNEAKEILESLGAK 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT +IVG +PGSK KAQQLGVKI+NEE F L++ Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660 >gi|254993539|ref|ZP_05275729.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-064] Length = 665 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 257/711 (36%), Positives = 382/711 (53%), Gaps = 66/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N EDL F RI + K + I + E KIDG Sbjct: 62 GGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K F Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +DIR+GD VL+K+AG++IP+V+ I +R +PF P CP Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L S K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N + ND +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667 N V LL+E+ + G +++S E K +V TG L+K+ R+ A+ Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|312877316|ref|ZP_07737282.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A] gi|311795879|gb|EFR12242.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A] Length = 673 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 250/703 (35%), Positives = 391/703 (55%), Gaps = 49/703 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L I+YHD YY P I D EYD L R + +P+ P+ P + Sbjct: 6 KKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ +V H +P LSL ++N +L F R+ + + + +E KIDG Sbjct: 63 VGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFD---YVVEYKIDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K++ Sbjct: 120 SVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKDE 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F+ LN E +ANPRNAA+G LR+L+P R L+ FV + + E + E Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNV-QWCEKEIETHAE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ LGF V+ +++ R LP++IDG V K+++ L+ G Sbjct: 237 ALEFLKRLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW +++KF ++ T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 ATAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCT G+ C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + N+ FG S NL +I +N L+R I++ Sbjct: 459 RG----LIKTPADIYYLKFED------LVNLERFGVKSTNNLLKAIQASKNRPLDRLIYA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S I+++ D LSL P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEDQLLSL---PDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E LK + +K S ++ V TG L K R++A+E + LGA Sbjct: 559 RQEQTRHLIER-LKAAGVNTVSEKKAKSDILKGYTFVLTGALSKYSRNEAKEILESLGAK 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT +IVG +PGSK KAQQLGVKI+NEE F L++ Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660 >gi|312127350|ref|YP_003992224.1| DNA ligase, nad-dependent [Caldicellulosiruptor hydrothermalis 108] gi|311777369|gb|ADQ06855.1| DNA ligase, NAD-dependent [Caldicellulosiruptor hydrothermalis 108] Length = 673 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 248/703 (35%), Positives = 393/703 (55%), Gaps = 49/703 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L I+YHD YY P I D EYD L R + +P+ P+ P + Sbjct: 6 KKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ +V H +P LSL ++N +L F R+ + + + +E KIDG Sbjct: 63 VGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFD---YVVEYKIDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K++ Sbjct: 120 SVALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLKLKEDIS--IVVRGEVFMPKDE 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F+ LN E +ANPRNAA+G LR+L+P R L+ FV + + E + + Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNV-QWCEKELETHAQ 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ LGF V+ +++ R LP++IDG V K+++ L+ G Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 E A+SPRW +++KF ++ T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCT G+ C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + N+ FG S NL +I +N L+R I++ Sbjct: 459 RG----LIKTPADIYYLKFED------LVNLERFGVKSTNNLLKAIQASKNRPLDRLIYA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S I+++ + LSL P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEEQLLSL---PDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E LK + +K S ++ V TGTL K R++A+E + LGA Sbjct: 559 RQDQTRHLIER-LKAAGVNTVSEKKAKSDILKGYTFVLTGTLSKYSRNEAKEILESLGAK 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT ++VG +PGSK KAQQLG+KI+NEE F L++ Sbjct: 618 VTESVSKKTTAVVVGQDPGSKFTKAQQLGIKILNEEDFEKLVK 660 >gi|314934069|ref|ZP_07841432.1| DNA ligase, NAD-dependent [Staphylococcus caprae C87] gi|313653180|gb|EFS16939.1| DNA ligase, NAD-dependent [Staphylococcus caprae C87] Length = 667 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 251/703 (35%), Positives = 392/703 (55%), Gaps = 62/703 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVQDNPSVPDSEYDKLLHELIDIEEKHPEYKTA---DSPTVRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N EDLRKF RI + + + + E KIDG + Sbjct: 64 GEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDNIGKVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y+ G+FV RGDG +GED++ +R I IP L + P EVRGE Y+ + F+ Sbjct: 119 SLKYQNGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYMPRRSFM 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN E G +P+ANPRNAA+G LR+L+ R L+ F++ + ++ A Q E L Sbjct: 177 NLNAEKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTDFDATTQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 Q + LGF N + G++ Y ++ R +L YDIDG+V KV++ Q+++G Sbjct: 237 QGLDDLGFKTNQERERVADIDGVLDYIDKWTEKRESLSYDIDGIVIKVNDLDQQEEMGYT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ ++LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVSKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I++ R DA+ + P+ CP C Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPKDAETYHMPTHCPSCD 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + +++E Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQQLYENE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L+ ++ G V NL +I K ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLKEEDLLPLERM------GSKKVENLLAAIEKAKDNSLEHLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + ++ LA+ Y + ++ ++ ++ L+ + +GD +AQ++V + +N Sbjct: 509 IRHLGVKASQVLAEKY-------ETMDRLLDVTEEE---LVAIHDIGDKLAQSVVTYLEN 558 Query: 619 PRNICAVEALLKEVSPSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRHKAQEYVT 671 +I A+ LK+ ++ + K + +SEIE K +V TG L+++ R +A +++ Sbjct: 559 -EDIRALIQKLKD--KNVNMNYKGIKTSEIEGHPEFNGKTIVLTGKLEQMTRSEATQWLE 615 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 GA V+ +++ TDI+I G + GSKL KA++ G +I E++F Sbjct: 616 MQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKFGKEIWTEDEF 658 >gi|289550377|ref|YP_003471281.1| DNA ligase [Staphylococcus lugdunensis HKU09-01] gi|289179909|gb|ADC87154.1| DNA ligase [Staphylococcus lugdunensis HKU09-01] Length = 667 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 251/701 (35%), Positives = 387/701 (55%), Gaps = 56/701 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ ++ P ++G Sbjct: 10 ELHDLLNQYSYE---YYVQDNPSVPDSEYDKLLHELIQIEADHPEYKTTDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N EDL++F RI + + + E KIDG + Sbjct: 64 GEAQSSFEKVRHDTPMLSLGNAFNEEDLKRFDQRI-----RDHIGEVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++YE GKFV RGDG +GED++ +R I IP L L P EVRGE Y+ + F+ Sbjct: 119 SLKYENGKFVQGLTRGDGTTGEDITENLRTIHAIP--LKLKEPLNFEVRGEAYMPRASFM 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 +LN + +P+ANPRNAA+G LR+L+ R L+ F++ + S+ A Q + L Sbjct: 177 SLNKQKEKNNEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFSDFNATTQSDAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + G+++Y + + R +L YDIDG+V KV++ + Q+++G Sbjct: 237 DELDRLGFKTNKERECVSDIDGVLAYIEKWTAKRESLAYDIDGIVIKVNDLAQQEEMGYT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ TRLLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTRLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I+ R DA+ + P+ CP C Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVKSIIERRPNDAETYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 ++VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++ E Sbjct: 406 HKLVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQHE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L ++ G V NL +I+K ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLTEEDLLPLERM------GKKKVENLLQAIDKAKSNSLEHLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+GA+ + LA+ Y + I ++ D+ LI + +GD +AQ++V + +N Sbjct: 509 IRHLGAKASYVLAEKY-------ETIERLLTVTEDE---LISIHDIGDKLAQSVVTYLEN 558 Query: 619 PRNICAVEALL-KEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + L K+V+ + + E E ++K +V TG L+++ R +A +++ G Sbjct: 559 EDIQSLISKLANKDVNMTFKGVKISELAGHPEFQDKTIVLTGKLEQMTRKEAADWLQLQG 618 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 A V+ +++ TD++I G++ GSKL KAQ+ G +I +E F+ Sbjct: 619 AKVTNSVTKNTDLVIAGEDAGSKLTKAQKFGTEIWSESDFI 659 >gi|283779823|ref|YP_003370578.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068] gi|283438276|gb|ADB16718.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068] Length = 676 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/707 (34%), Positives = 388/707 (54%), Gaps = 58/707 (8%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 L +L + I HD YY ++P I D EYD L + I +FP+L P+ P ++G Sbjct: 12 LQALREAIRRHDYLYYVRAQPEISDLEYDRLMQDLTTIEASFPELV---TPDSPTQRVGE 68 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 E L +V H P LS+E + +EDL+KF R + D ++ + +E K+DG I+ Sbjct: 69 EPMEGLVQVAHRAPMLSIENSYTVEDLQKFAERTSKSL---DGEAVEWVVELKVDGVAIS 125 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 +RYE G V A RG+G G+DV+ +R I +P R+ IP ++EVRGEVY++ +D + Sbjct: 126 VRYENGLLVQALTRGNGEVGDDVTHNVRTIADVPLRLYGDKIPAVLEVRGEVYMTNSDLV 185 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258 LN +G++ YAN RN ASG +R L+P R L VHG+G + A+ + L Sbjct: 186 LLNKRQQELGKELYANTRNVASGTIRLLDPKLCAERKLRMLVHGVGVCEGMTAENHMQFL 245 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 +++ LG P + TF V Y E+ L +++DGLV KV+ F + +LG+R Sbjct: 246 EQVSSLGLPPTPHCKCFATFSEAVKYCEEIPERLHELDFEVDGLVLKVNRFDQRAKLGQR 305 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++SPRW+I++KF + +A+T+LL I +Q+G+TG +TPVA LEPV + G ++ A+LHN D Sbjct: 306 SKSPRWVIAYKFEKYEATTKLLGISVQVGKTGAITPVAELEPVQLAGTTVSRASLHNAD- 364 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 +++R +DIR+GD V+V++AG++IP +V + ER D F FP+ CP+C Sbjct: 365 --------EIVR--KDIRIGDIVVVEKAGKIIPHIVRVEAAERTTDLPVFQFPTHCPVCG 414 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S V +D + G + RCT +C AQ E+L+ F +R A +IEGLG + +D S+ Sbjct: 415 SDVAKD---EGGVYI---RCTNP-SCPAQLREKLRFFATRGAMDIEGLGDKLVDQLVASK 467 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 + D++ L + TS ++ G+ S T L + I ++ L R + L Sbjct: 468 ----LVTCYGDLYRLTLDKLTSLERM------GEKSATKLLEGIVASKSRPLSRLLNGLS 517 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G+ ++ LA+++ + Q A D L RV VG+I A ++ EF + Sbjct: 518 IRHIGSNGSQVLARHFGTLDAIRQ------ATLED----LSRVSEVGEITAASVYEFLHS 567 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEI-------ENKKLVFTGTLQKIQRHKAQEYVT 671 ++ L+ ++G + + S I K V TGTL K R + ++ + Sbjct: 568 DYGKTTIDDLV-----ALGLNTQEPKSAIPTGEGIFAGKTFVVTGTLSKFSRDEVEDLIE 622 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G S+ +S+KTD ++ G GSKL KA+ LGVKI++E F+ LL Sbjct: 623 KHGGKASSSVSKKTDYLLAGAEAGSKLAKAESLGVKILSEADFIALL 669 >gi|188997338|ref|YP_001931589.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1] gi|254781435|sp|B2V5U1|DNLJ_SULSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188932405|gb|ACD67035.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1] Length = 704 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 257/724 (35%), Positives = 394/724 (54%), Gaps = 57/724 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ E+A+K + L + I +HD YY ++P+I D EYD L + I +P+L P Sbjct: 25 LTKEEAKKIVEDLREVIRFHDWRYYVLAQPVISDYEYDKLFKLLKDIEGKYPELI---TP 81 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ E+ +V H P LSL+ +N DLR F R+ + + +++E Sbjct: 82 DSPTQRVPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVRELTGL---DKVEYSVE 138 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRG 189 PK DG I++ YEK FV A RGDG GE+++ ++ I TIP + I +E+RG Sbjct: 139 PKFDGAGISLIYEKDLFVRGATRGDGEVGEEITNNLKVIKTIPLSAKFSQYGIDKVEIRG 198 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EV I K+ F +N+E + G +ANPRNAA+G +R +P+++ R L FV+ + + Sbjct: 199 EVLIRKDLFKKMNEERLEEGLPLFANPRNAAAGSIRLQDPSEVAKRNLEAFVYQITYAEK 258 Query: 249 -------IFAKGQYEMLQKMRCLGFPVNNGVRQANT-FHGIVSYYNEMKSIRSTLPYDID 300 K + ++ + LGF V + ++ Y E + R PY+ID Sbjct: 259 DGKNLLGTVLKKHSDNIKMLHELGFKTPYPVMKVCIGIEEVIQYCEEWQRKRDAYPYEID 318 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KV++ SL +LG + PRW I+ KF +QA+T+++++ Q+GRTG +TPVA+LEP Sbjct: 319 GMVIKVNDISLYDKLGFTSHHPRWAIAFKFKARQATTKIINVVFQVGRTGAITPVAKLEP 378 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V IGG ++++ +L NED+I+ +DIR+GD VLV+RAG+VIP VV +I Sbjct: 379 VEIGGVIVSSVSLINEDFIR-----------EKDIRIGDTVLVERAGDVIPYVVMVIKEA 427 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R + +P FP CP C S +V+ A +RC + C AQ +ERL HF S+DA Sbjct: 428 RTGNEKPIEFPKTCPSCGSPIVKPPGE------AVYRCV-NINCPAQVIERLIHFASKDA 480 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+GL + + F+ + +R DI+ L I+NI GFG SV NL + Sbjct: 481 MDIKGLSEATIRKFYNLK----LVRTIPDIYRL------DYNLIKNIPGFGPKSVENLKN 530 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I + + L R I+ LGIR+VG A++L A + I N L++ Sbjct: 531 AIEESKKRPLYRLIYGLGIRYVGEVTAKTL----------ASAVRCIDDLKNFTITDLMK 580 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 +P +G +A I F+ N N+ +E L+E+ E+ ++ VFTGTL+ Sbjct: 581 LPDIGYKVASEIYNFFHNQENLKMIEE-LRELRVKTCHEEEEKKGKLAGLNFVFTGTLKC 639 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719 R KA+E V LG V +S+K ++VG+ PGSKL+KAQ+LG VKI+NEE+FL L+ Sbjct: 640 CSREKAKEIVESLGGNVLDTVSKKVHYLVVGEEPGSKLQKAQKLGTVKIINEEEFLKLIG 699 Query: 720 QYNT 723 NT Sbjct: 700 GENT 703 >gi|289435095|ref|YP_003464967.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171339|emb|CBH27881.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 671 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 258/711 (36%), Positives = 383/711 (53%), Gaps = 66/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLQIEAAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N DL F RI + K I + E KIDG Sbjct: 62 GGEVLEGFQKVAHDTPMLSLANAFNKGDLADFDRRI----RDKVGEDIAYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YEKGK+ A RGDG +GED++A +R I +IP L + IEVRGE ++ K F Sbjct: 118 VSLQYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVTTHSD 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R + +Y +E R+ L YDIDG+V K+++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTAKSPRWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +DIR+GD VL+K+AG++IP+V+ I ER + +PF P CP Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGEEEPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CGSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFT 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L S K+ + G+ SVTNL SI + + SLE+ +F Sbjct: 457 H----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEQSKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N + ND +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFETMDNLKLADKETLTSIND----------IGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667 N V LL E+ + G +N+S E K +V TG L+++ R+ A+ Sbjct: 557 ANEE----VHDLLDELKRANVNMTYTGPKLENMSEEELIFAGKTVVLTGKLEQLTRNDAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +E + L Sbjct: 613 SLIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLIEYL 663 >gi|242371787|ref|ZP_04817361.1| DNA ligase [Staphylococcus epidermidis M23864:W1] gi|242350488|gb|EES42089.1| DNA ligase [Staphylococcus epidermidis M23864:W1] Length = 667 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 250/706 (35%), Positives = 384/706 (54%), Gaps = 68/706 (9%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVQDNPSVPDSEYDKLLHELIEIETEHPEYKTA---DSPTVRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N EDLRKF RI +++ ++ + E KIDG + Sbjct: 64 GEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RENIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y+ GKFV RGDG +GED++ +R I IP L + P EVRGE Y+ + F+ Sbjct: 119 SLKYQDGKFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYMPRRSFM 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN + G +P+ANPRNAA+G LR+L+ R L+ F++ + ++ A Q L Sbjct: 177 NLNKQKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFTDFNATTQSGAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + + G++ Y + R +L YDIDG+V KV++ Q+++G Sbjct: 237 NELDQLGFKTNQERERVSDIEGVLKYIEKWTDKRESLSYDIDGIVIKVNDLDQQEEMGYT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I++ R DA+ + P+ CP C Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVKSILDRRPDDAETYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + +++E Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQQLYENE 458 Query: 499 DPAFSIRIPADIFTLQRR-----QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 I+ ADIF LQ ++ T K+EN+L +I K ++ S E Sbjct: 459 ----LIKDVADIFYLQEEDLLPLERMGTKKVENLLA-----------AIEKAKDNSFEHL 503 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIRH+G + ++ LA+ Y + + L+ + +GD +AQ++V Sbjct: 504 LFGLGIRHLGVKASQVLAEKYETMDRLLEVTE----------AELVEIHDIGDKLAQSVV 553 Query: 614 EFYQNPRNICAVEALLKEVS-----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + +N +I A+ LK+ + I E E K +V TG L+++ R +A + Sbjct: 554 TYLEN-EDIRALIQKLKDKNVNMSYKGIKTTEIEGHPEFSGKTIVLTGKLEQMTRSEASQ 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 ++ GA V+ +++ TDI+I G + GSKL KA++ G +I EE+F Sbjct: 613 WLEMQGAKVTNSVTKSTDIVIAGADAGSKLTKAEKFGTEIWTEEEF 658 >gi|71275191|ref|ZP_00651478.1| NAD-dependent DNA ligase [Xylella fastidiosa Dixon] gi|170731182|ref|YP_001776615.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa M12] gi|71164000|gb|EAO13715.1| NAD-dependent DNA ligase [Xylella fastidiosa Dixon] gi|167965975|gb|ACA12985.1| DNA ligase (NAD(+)) [Xylella fastidiosa M12] Length = 837 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 250/688 (36%), Positives = 372/688 (54%), Gaps = 107/688 (15%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +IP++ Q EL QE +YH Y+ +P I D++YD + R DA+ +PDL Sbjct: 7 MIPLDP---AQRAAELRRRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEATYPDL 60 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 A P+ P ++G + + +V H++P LSL ++ ++ +F+ RI + + + Sbjct: 61 A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRIT---ARLGETA 114 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184 F+ EPK+DG I++RY+ G F+ A RGDG +GEDV+A +R +PTIP R+ S P + Sbjct: 115 PSFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 174 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 +EVRGEVY+ + DF A N + G K ANPRN A+G LR+L+P R L+F+ +G+ Sbjct: 175 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 234 Query: 244 GKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ ++ + E+L +R GFPV+ V G+++YY M++IR TLP+DIDG+ Sbjct: 235 GEVADDVSFHSHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGI 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYK+D+ S Q ++G AR+PRW I+HKF ++ +T + I+IQIGRTG TPVARL PV Sbjct: 295 VYKLDDLSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G +T+ATLHN D I L D+R+GD V+V+RAG+VIP+VV +I + R Sbjct: 355 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRP 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P +S P CP+C S +VR+ TG A RC+G LAC AQ+ E ++HFVSR A + Sbjct: 404 PGVTAWSMPMACPVCGSEIVRE----TG--AAVWRCSGELACPAQRKEAIRHFVSRRAMD 457 Query: 483 IEGLGKQQLDFFF--------------------------KSEDPAFSIRIPADIFTLQRR 516 +EGLG + ++ ++ P +R D T R Sbjct: 458 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 517 Query: 517 QQTSTTKIENIL--------GFGDVS--------------------------VTNLYDSI 542 QQ +E IL G GDV NL +I Sbjct: 518 QQ-----LEEILRTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAI 572 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 ++ R +LERF+F+LG+ HVG A++LA S+ + A II W VP Sbjct: 573 DRSRQTTLERFLFALGMTHVGETTAKALAH---SFGDLA-----II--RQLPWPLFKCVP 622 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK 630 +G +A+AI F P N A++ L++ Sbjct: 623 DIGGEVARAIGHFMDQPANQQAIDDLVE 650 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 11/121 (9%) Query: 609 AQAIVEFYQNPRNIC-------AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 AQ++ E++Q+P NI + LL ++ PS R ++ + + +V TG L + Sbjct: 719 AQSLTEWFQSPDNISLARRLQHCCDVLLAQL-PSPDRAH---TAPLNGQSVVLTGKLASL 774 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R A + LGA + +S+KT ++ G++PGSKL+KA L V I +E + L L+QY Sbjct: 775 TREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHALHVDIWDEARLLDFLEQY 834 Query: 722 N 722 + Sbjct: 835 S 835 >gi|283471175|emb|CAQ50386.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus ST398] Length = 667 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 248/701 (35%), Positives = 383/701 (54%), Gaps = 56/701 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +DLRKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y G FV RGDG +GED++ ++ I IP L + P +EVRGE Y+ + FL Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E L Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + + G++ Y + S R +LPYDIDG+V KV++ Q ++G Sbjct: 237 DELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I R DA + P+ CP C Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++SE Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L ++ G V NL +I + ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + ++ LA+ Y + I+ ++ + L+ + +GD +AQ++V + +N Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558 Query: 619 PRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++ L + + I + E K +V TG L ++ R++A +++T G Sbjct: 559 EDIRALIQKLKYKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLTSQG 618 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 A V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ Sbjct: 619 AKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659 >gi|327475239|gb|AEA77214.1| DNA ligase [Bacillus sp. 15.4] Length = 668 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 257/711 (36%), Positives = 394/711 (55%), Gaps = 60/711 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S EQ EL +L + +Y Y+ KP + D+EYD + AI + FP+L R+ D Sbjct: 5 SAEQKVAELHNLLNQYNYE---YHVLDKPSVPDAEYDRVMNELIAIENKFPEL-RTAD-- 58 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG + KV H P LSL +N EDLR F ++ + DD S + E Sbjct: 59 SPTQRVGGSTLQAFEKVQHRTPMLSLGNAFNKEDLRDFDRKVRQ--AAGDDYS--YVCEL 114 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGE 190 KIDG +++RYE G F A RGDG GED++A ++ I +IP L IPE +EVRGE Sbjct: 115 KIDGLAVSLRYEDGLFRQGATRGDGTVGEDITANLKTIKSIP----LRIPEPMTMEVRGE 170 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249 ++ K F ALN +P+ANPRNAA+G LR+L+P +R L+ +++ + E Sbjct: 171 AFMPKRSFEALNKAKEEREEEPFANPRNAAAGSLRQLDPRIAASRNLDIYLYSIADVGET 230 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 L + GF N ++ T ++ Y R L YDIDG+V KVD Sbjct: 231 GVVSHSSGLDLLDKFGFKTNKERKKCQTIDEVIEYVEGWVERRPDLQYDIDGIVIKVDSL 290 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+QLG A+SPRW I++KF ++ T+L +I++ +GRTG++TP A LEPV + G + Sbjct: 291 ELQEQLGTTAKSPRWAIAYKFPAEEVVTQLKEIELSVGRTGVVTPTAILEPVRVAGTTVQ 350 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED I+ +DI++GD V+VK+AG++IP+VV+++ R + F Sbjct: 351 RASLHNEDLIR-----------EKDIKIGDYVVVKKAGDIIPEVVNVLEERRTGGEKDFL 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C+S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ Sbjct: 400 MPEGCPECESGLVR----LEGEV--ALRCINP-KCPAQIREGLIHFVSRNAMNIDGLGEK 452 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + FK I ADI+ L+R Q ++ G+ SV NL ++I + S Sbjct: 453 VISQLFKE----GLIEDVADIYRLERDQLLQLERM------GEKSVDNLLNAIEASKANS 502 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LE+ +F LGIRHVGA+ A++LA Q F +I+ ++ + DD L + +GD +A Sbjct: 503 LEKLLFGLGIRHVGAKAAKTLA------QEFG-DIDTLMNASKDD---LTAINEIGDKMA 552 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRH 664 A+V +++ + + L + + K V +E + +V TG ++++ R+ Sbjct: 553 DAVVAYFEKEEAVELIGELRTAGVNTEYKGPKPVKAEEIDSYFAGRTVVLTGKMEQLGRN 612 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A++ + +LG V+ +S+KTD++I G+ GSKL KAQ+L ++I +EE+ L Sbjct: 613 EAKQKIEELGGKVTGSVSKKTDLLIAGEEAGSKLAKAQELDIEIWDEEKLL 663 >gi|291278945|ref|YP_003495780.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1] gi|290753647|dbj|BAI80024.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1] Length = 663 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 254/708 (35%), Positives = 395/708 (55%), Gaps = 58/708 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E KE L EI+YHD YY + P+I D EYD L +R I +P++ P P Sbjct: 3 ESILKEYQKLVDEINYHDYRYYVLNDPVISDYEYDQLYKRLKEIESKYPEII---SPYSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G +L V H + LSL+ +N +L+ F R+ + + F +EPKI Sbjct: 60 TQRVGYAPVSNLKTVKHEVKMLSLDNTYNEGELKDFYNRVLKNLESVPS----FVVEPKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++ YE G A RGDG +GEDV+ ++ I +IP L + + + VRGEV++ Sbjct: 116 DGAAVSLTYEDGILQIGATRGDGVTGEDVTHNVKTIKSIP--LKIAVKGKLVVRGEVFLP 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG--LGKTSEIFA 251 K++F +NDE + G +P+ANPRNAA+G L+ L+P R L+ F++ +G+ + Sbjct: 174 KSEFERINDERVKNGLEPFANPRNAAAGTLKLLDPRIAAQRNLDIFIYSVDIGRKHDT-- 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++ L ++ LGF VN +++ +F I+S+ + +R L Y+IDG V KV+E+S Sbjct: 232 --HFDDLNYLKGLGFKVNPLIKKVESFEDIISHIENLGKMRDELDYEIDGAVIKVNEYSY 289 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLGE + PRW ++ K+ + +T L D+ Q+GRTGI+TPVA LEPV+I G+++ A Sbjct: 290 QEQLGETIKYPRWAVAFKYPPELKTTVLKDVIFQVGRTGIITPVAVLEPVHISGSVVKRA 349 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED I+ L D+++GD V V+++GE+IPK++ ++ +R + FP Sbjct: 350 TLHNEDEIRRL-----------DVKIGDTVFVEKSGEIIPKIIKVVKEKRTGKEKEIVFP 398 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C +VR N A + C CSA+ + HF SRDA +I+GLG+ + Sbjct: 399 EKCPVCNG-LVRKEN-------AYYVCLNP-DCSAKLKASIIHFASRDAMDIKGLGEAIV 449 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F D F ++ ADI+TL KI + GFG S NL SI +N S + Sbjct: 450 ERFV---DLGF-LKSIADIYTLD------FEKIALLDGFGKKSAENLKKSIEDSKNRSFD 499 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R +++LGIRHVG + AR L ++ NI L+ + VG+IIA++ Sbjct: 500 RVLYALGIRHVGIKTARILTNHF----------KNIEKLQKATIEELVSIDEVGEIIAKS 549 Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + ++ + +E L + S+ ++N S +++ K V TGTL K R+ E + Sbjct: 550 VYYTLRDENFLKLIERLKSYGLKFSMEDDKENKSEKLKGLKFVITGTLSK-PRNYYVELI 608 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +LG VS+ +S+KTD +IVG++PGSK KA LGVK +NEE+F L+ Sbjct: 609 EKLGGEVSSSVSKKTDYVIVGEDPGSKYNKAISLGVKTINEEEFYKLI 656 >gi|226224361|ref|YP_002758468.1| DNA ligase [Listeria monocytogenes Clip81459] gi|254781359|sp|C1KW57|DNLJ_LISMC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225876823|emb|CAS05532.1| Putative DNA ligase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 671 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 257/711 (36%), Positives = 382/711 (53%), Gaps = 66/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N EDL F RI + K + I + E KIDG Sbjct: 62 GGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K F Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +DIR+GD VL+K+AG++IP+V+ I +R +PF P CP Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L S K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N + ND +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667 N V LL+E+ + G +++S E K +V TG L+K+ R+ A+ Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|171914081|ref|ZP_02929551.1| DNA ligase, NAD-dependent [Verrucomicrobium spinosum DSM 4136] Length = 669 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 248/714 (34%), Positives = 387/714 (54%), Gaps = 56/714 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A ++E A ++ L +EI +H+ YYQ + P I D +DAL R + A P L Sbjct: 4 AAALETASLRVAHLREEIEHHNRLYYQNAAPEISDQAFDALLRELQDLEKAHPSLI---T 60 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P ++GG ++ H +P +SL+ ++ E++R F R+ + ++ + T+ Sbjct: 61 PDSPTQRVGGTPLDGFKQIAHPVPMMSLDNTYSEEEMRDFFQRLVKGLGRE---KVRCTI 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 EPK+DG + +RYE G YAA RGDG G+D++ +R I +P L +P+ EVRGE Sbjct: 118 EPKVDGVAVAVRYEAGALKYAATRGDGRMGDDITQNLRTIRALPLRLPAKVPQTFEVRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249 VY+++ F +N E G +ANPRNA +G L++L+P + R L +G+G E Sbjct: 178 VYMTRAGFDKMNQEREEAGEPRFANPRNATAGSLKQLDPRLVAKRPLQVIFYGVGDVGEA 237 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q ++ + + G P+ + A + +++ +++ R LPYD DG V KVD F Sbjct: 238 RLTSQDDIHKLLHDAGLPMAAHIWHAESADEVIAAIHQLDEKRKALPYDTDGAVVKVDAF 297 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+ LG +++PRW I++K+ +QA TRLL +DIQ+GRTG LTPVARL PV + G+ ++ Sbjct: 298 AEQRDLGATSKAPRWAIAYKYQPEQAETRLLSVDIQVGRTGALTPVARLVPVFLSGSTVS 357 Query: 370 NATLHN-EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 NATLHN E+ ++ +DIRVGD V++++AGE+IP VV + +R + + Sbjct: 358 NATLHNFEEIVR------------KDIRVGDFVIIEKAGEIIPAVVAVNKEKRTGEEKEV 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+CQS VV+D + A RCT C Q RL+HF R A +I GLG+ Sbjct: 406 PVPVHCPVCQSPVVKD------EAQVAIRCTNP-NCPEQVKRRLEHFTHRGAMDIRGLGE 458 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 Q + D +I PAD++ L +T + + G S+ NL + + + Sbjct: 459 QMVAQLV---DAHLAI-TPADLYDL------NTHALSKLERQGAKSIENLLKGLEESKKQ 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + R IF LGI HVGA ARSL ++ + A+ A D L++V +G I+ Sbjct: 509 APWRLIFGLGILHVGASSARSLMDHFGAVDALAR------ASVED----LLKVQDIGGIV 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRH 664 AQ+I ++Q P N +ALL + S + + + S V TGTL + + Sbjct: 559 AQSIHGWFQVPAN----QALLDRLRSSGLQFDNPKTEQASDTFAGTSWVITGTLSESREV 614 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ T G +VS++ S KT ++ G+ GSKLEKA +LGVK+++E F +L Sbjct: 615 IAELIRTHGGKMVSSV-SSKTTYLLAGEEAGSKLEKAAKLGVKVLSEADFRAML 667 >gi|28199807|ref|NP_780121.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa Temecula1] gi|182682559|ref|YP_001830719.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa M23] gi|81438262|sp|Q87A88|DNLJ_XYLFT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254782314|sp|B2I9S4|DNLJ_XYLF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28057928|gb|AAO29770.1| DNA ligase [Xylella fastidiosa Temecula1] gi|182632669|gb|ACB93445.1| DNA ligase, NAD-dependent [Xylella fastidiosa M23] gi|307578838|gb|ADN62807.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 831 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 251/688 (36%), Positives = 374/688 (54%), Gaps = 107/688 (15%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +IP++ Q EL QE +YH Y+ +P I D++YD + R DA+ +PDL Sbjct: 1 MIPLDP---AQRAAELRRRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEATYPDL 54 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 A P+ P ++G + + +V H++P LSL ++ ++ +F+ RI + + + Sbjct: 55 A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRIT---ARLGETA 108 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184 F+ EPK+DG I++RY+ G F+ A RGDG +GEDV+A +R +PTIP R+ S P + Sbjct: 109 PGFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 168 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 +EVRGEVY+ + DF A N + G K ANPRN A+G LR+L+P R L+F+ +G+ Sbjct: 169 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 228 Query: 244 GKTSEIFAKGQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ ++ A ++ E+L +R GFPV+ V G+++YY M++IR TLP+DIDG+ Sbjct: 229 GEVTDDVAFHRHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGI 288 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYK+D+ S Q ++G AR+PRW I+HKF ++ +T + I+IQIGRTG TPVARL PV Sbjct: 289 VYKLDDLSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 348 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G +T+ TLHN D I L D+R+GD V+V+RAG+VIP+VV +I + R Sbjct: 349 VAGVTVTSVTLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRP 397 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P A +S P CP+C S +VR+ TG A RC+G LAC AQ+ E ++HFVSR A + Sbjct: 398 PGATAWSMPMACPVCGSEIVRE----TG--AAVWRCSGELACPAQRKEAIRHFVSRRAMD 451 Query: 483 IEGLGKQQLDFFF--------------------------KSEDPAFSIRIPADIFTLQRR 516 +EGLG + ++ ++ P +R D T R Sbjct: 452 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 511 Query: 517 QQTSTTKIENIL--------GFGDVS--------------------------VTNLYDSI 542 QQ +E IL G GDV NL +I Sbjct: 512 QQ-----LEEILRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAI 566 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 ++ R +LERF+F+LG+ HVG A++LA S+ + A II W VP Sbjct: 567 DRSRQTTLERFLFALGMTHVGETTAKALAH---SFGDLA-----II--RQLPWPLFKCVP 616 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK 630 +G +A+AI F P N A++ L++ Sbjct: 617 DIGGEVARAIGHFMDQPANQQAIDDLVE 644 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 13/122 (10%) Query: 609 AQAIVEFYQNPRNI--------CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 AQ++ E++Q+P NI C L + +SP ++ ++ + + +V TG L Sbjct: 713 AQSLTEWFQSPDNISLARRLQHCCDVLLAQLLSP-----DRAHTAPLNGQSVVLTGKLAS 767 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R A + LGA + +S+KT ++ G++PGSKL+KA L V I +E + L L+Q Sbjct: 768 LTREAAATRLESLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHALHVDIWDEARLLAFLEQ 827 Query: 721 YN 722 Y+ Sbjct: 828 YS 829 >gi|71899829|ref|ZP_00681979.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1] gi|254782317|sp|B0U5G7|DNLJ_XYLFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71730420|gb|EAO32501.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1] Length = 831 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 250/688 (36%), Positives = 372/688 (54%), Gaps = 107/688 (15%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +IP++ Q EL QE +YH Y+ +P I D++YD + R DA+ +PDL Sbjct: 1 MIPLDP---AQRAAELRRRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEATYPDL 54 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 A P+ P ++G + + +V H++P LSL ++ ++ +F+ RI + + + Sbjct: 55 A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRIT---ARLGETA 108 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184 F+ EPK+DG I++RY+ G F+ A RGDG +GEDV+A +R +PTIP R+ S P + Sbjct: 109 PSFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 168 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 +EVRGEVY+ + DF A N + G K ANPRN A+G LR+L+P R L+F+ +G+ Sbjct: 169 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 228 Query: 244 GKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ ++ + E+L +R GFPV+ V G+++YY M++IR TLP+DIDG+ Sbjct: 229 GEVADDVSFHSHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGI 288 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYK+D+ S Q ++G AR+PRW I+HKF ++ +T + I+IQIGRTG TPVARL PV Sbjct: 289 VYKLDDLSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 348 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G +T+ATLHN D I L D+R+GD V+V+RAG+VIP+VV +I + R Sbjct: 349 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRP 397 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P +S P CP+C S +VR+ TG A RC+G LAC AQ+ E ++HFVSR A + Sbjct: 398 PGVTAWSMPMACPVCGSEIVRE----TG--AAVWRCSGELACPAQRKEAIRHFVSRRAMD 451 Query: 483 IEGLGKQQLDFFF--------------------------KSEDPAFSIRIPADIFTLQRR 516 +EGLG + ++ ++ P +R D T R Sbjct: 452 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 511 Query: 517 QQTSTTKIENIL--------GFGDVS--------------------------VTNLYDSI 542 QQ +E IL G GDV NL +I Sbjct: 512 QQ-----LEEILRTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAI 566 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 ++ R +LERF+F+LG+ HVG A++LA S+ + A II W VP Sbjct: 567 DRSRQTTLERFLFALGMTHVGETTAKALAH---SFGDLA-----II--RQLPWPLFKCVP 616 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK 630 +G +A+AI F P N A++ L++ Sbjct: 617 DIGGEVARAIGHFMDQPANQQAIDDLVE 644 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 11/121 (9%) Query: 609 AQAIVEFYQNPRNIC-------AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 AQ++ E++Q+P NI + LL ++ PS R ++ + + +V TG L + Sbjct: 713 AQSLTEWFQSPDNISLARRLQHCCDVLLAQL-PSPDRAH---TAPLNGQSVVLTGKLASL 768 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R A + LGA + +S+KT ++ G++PGSKL+KA L V I +E + L L+QY Sbjct: 769 TREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHALHVDIWDEARLLDFLEQY 828 Query: 722 N 722 + Sbjct: 829 S 829 >gi|47092911|ref|ZP_00230693.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858] gi|254825997|ref|ZP_05230998.1| DNA ligase [Listeria monocytogenes FSL J1-194] gi|254853668|ref|ZP_05243016.1| DNA ligase [Listeria monocytogenes FSL R2-503] gi|254932796|ref|ZP_05266155.1| DNA ligase [Listeria monocytogenes HPB2262] gi|300765954|ref|ZP_07075926.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017] gi|47018737|gb|EAL09488.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858] gi|258607047|gb|EEW19655.1| DNA ligase [Listeria monocytogenes FSL R2-503] gi|293584349|gb|EFF96381.1| DNA ligase [Listeria monocytogenes HPB2262] gi|293595236|gb|EFG02997.1| DNA ligase [Listeria monocytogenes FSL J1-194] gi|300513340|gb|EFK40415.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017] gi|328466510|gb|EGF37653.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 1816] gi|328473899|gb|EGF44721.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 220] gi|332312198|gb|EGJ25293.1| DNA ligase [Listeria monocytogenes str. Scott A] Length = 671 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 257/711 (36%), Positives = 382/711 (53%), Gaps = 66/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N EDL F RI + K + I + E KIDG Sbjct: 62 GGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K F Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 NTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +DIR+GD VL+K+AG++IP+V+ I +R +PF P CP Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPA 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L S K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 Q----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIQASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N + ND +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSIND----------IGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667 N V LL+E+ + G +++S E K +V TG L+K+ R+ A+ Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|62185205|ref|YP_219990.1| NAD-dependent DNA ligase LigA [Chlamydophila abortus S26/3] gi|81312632|sp|Q5L5Q2|DNLJ_CHLAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|62148272|emb|CAH64037.1| putative DNA ligase [Chlamydophila abortus S26/3] Length = 660 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 248/705 (35%), Positives = 395/705 (56%), Gaps = 54/705 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +R++ SL ++I D YY P I D +YD R+ +I P+ P+ Sbjct: 6 SREQYISLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLWSPS---M 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G + S V H+ P LS+ + +E+L +F +RI +K + +TLE KIDG Sbjct: 63 RLGDRTSGSFPIVAHAHPMLSIANAYTLEELYEFFSRI----EKTLGYTPKYTLEIKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + IRYE+ V A RG+G GED++A IR I ++P LS PE +EVRGEV+ S+ Sbjct: 119 IAVAIRYEQRVLVQALSRGNGRKGEDITANIRTIRSLPLRLSKEAPEFLEVRGEVFFSRA 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N + +ANPRNAA G L+ L+ + + N + G +E + YE Sbjct: 179 TFCQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQR-NLEISIYGSLAEENKRSHYE 237 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + GFPV RQ T +V+ +E++ R+ LP +IDG+V KVD+ QK LG Sbjct: 238 NLLLCKEWGFPVFGQPRQCQTIEKVVASLHEIEVARAQLPMEIDGVVIKVDDIEDQKVLG 297 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+ ++ A+L+NE Sbjct: 298 MTAKHYRWALAYKYAPERAETILEDIIVQVGRTGVLTPVAKLRPVVLSGSRVSRASLYNE 357 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +DIR+GD V V++ GE+IP+VV + + +R QP+ P +CP+ Sbjct: 358 DEIE-----------RKDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGTQPWVMPEYCPV 406 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C +V R+ + + RCT L CSA +E+++ F RDA +I+ LG++ + F Sbjct: 407 CHQKVTRESDK------VSVRCTNSL-CSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFD 459 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I DIF Q + + + GF D S+ N+ SI K +++ L+RFI + Sbjct: 460 ----LGCIHRRCDIF------QITEEDLRQVPGFKDKSIRNVLKSIEKAKSVPLDRFITA 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +VG A +LA+++LS + +++A + DD L + +GD +A++IV ++ Sbjct: 510 LGIPYVGIGGANALAQHFLS-------LESVMAASLDD---LKAIEGIGDKVAESIVAYF 559 Query: 617 QNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 P ++ ++ +L S+G H SS K V TGTL+K+ R +A+ Y+ Sbjct: 560 HQPEHLEEIQKML-----SLGVHILPCHRASSSCLGKAFVITGTLEKLTRSEAETYIRNC 614 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G V + +S+ TD ++VG +PGSKL++AQ+LGV I++E++ L LL Sbjct: 615 GGKVGSSVSKNTDYLVVGQDPGSKLKRAQELGVPILSEDELLKLL 659 >gi|238020272|ref|ZP_04600698.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147] gi|237868666|gb|EEP69670.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147] Length = 797 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 271/808 (33%), Positives = 415/808 (51%), Gaps = 136/808 (16%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +QA++++ +L +++ + YY P + DSEYD L R +A+ +P P P Sbjct: 21 QQAQQKIQTLTAQLNQYAHEYYTLDAPTVPDSEYDRLYRELEALETEYPQF---RLPESP 77 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED----------LRKFITRIYRFWQKKDDN 124 N++GG + V H++P LSL ++ D +R F R+ + Sbjct: 78 TNRVGGAVLDGFETVIHAVPMLSLANAFSPRDDEAGTFDHAEMRAFDERVCKDLGAAHTE 137 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPE 183 + +EPK DG I++ Y+ G + AA RGDG +GEDV+ I+ + IP R+ +P+ Sbjct: 138 ---YIIEPKFDGLAISLLYQNGILIQAATRGDGTTGEDVTENIKTVRNIPLRLHGDEVPD 194 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVH 241 +IEVRGEV + K DF ALN + G+KP+ANPRNAA+G LR+LN + IT R L+FF + Sbjct: 195 LIEVRGEVLMLKADFAALNARQLDAGQKPFANPRNAAAGSLRQLN-SAITAQRKLHFFGY 253 Query: 242 GLGKTSEIF--AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYD 298 G+ + S F + + ++ + LGF +R ++ +Y M R LPY+ Sbjct: 254 GIARLSTAFRQPENHAQEIELLARLGFSEPQAQIRVCANIQEVLDFYETMAQQRPQLPYE 313 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KV++ Q+QLG +R+PRW I+HKF ++A T + ID+Q+GRTG +TPVARL Sbjct: 314 IDGMVVKVNDLRQQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGSITPVARL 373 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV +GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +++ Sbjct: 374 KPVFVGGVTVTNATLHNQDEV-----------ARKDVRVGDTVVVRRAGDVIPEVVRVVL 422 Query: 419 NER------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466 R P F P CP+C S V R++ G+ VA RCTGG+ C A Sbjct: 423 ERRPMRNVDLLGERQEPQHPAFRLPETCPVCGSAVEREI----GEAVA--RCTGGIVCKA 476 Query: 467 QQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ-RRQQTSTTKIE 525 Q+ + L HF SR A +I GLG +Q++ + +D S ADI+ L + QT I+ Sbjct: 477 QRAQGLIHFASRKAMDIVGLGDKQIEALVE-QDVLHSF---ADIYQLDIAKLQT----IK 528 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--- 582 + + N+ D++ R L RF+F+LGIRHVG A+ LA + + + Sbjct: 529 DSKSGANKWTHNILDAVAASRQPPLARFLFALGIRHVGESTAKQLAAAFGDWDTVRRAPE 588 Query: 583 -------EINNIIAHN-------------NDDWLSLI----------------------R 600 +I +++AH+ DD L + R Sbjct: 589 PVLACLPDIGSVVAHSIAHFFRLPEQQKLLDDLLHFVSPQEAAIATLVLEYATPARWLAR 648 Query: 601 VP--------------LVGDIIAQAIVE---------FYQNP------RNICAVEALLKE 631 +P L G IAQ + + + + P R+I A A L E Sbjct: 649 LPDYKISEKRAQELWDLAGGSIAQLLADDALPSDWQAWRRQPENARLLRDIDAFFAQLPE 708 Query: 632 VS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 + P+ ++ +EI K V TGTL ++R +A + G VS +S+KTD ++ Sbjct: 709 HALPADNAVSGSLKNEITGKIFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFVVA 768 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G GSKLEKAQ LG+ +++EE+ L +L Sbjct: 769 GAEAGSKLEKAQSLGITVLSEEELLGML 796 >gi|222094064|ref|YP_002528121.1| nad-dependent DNA ligase liga [Bacillus cereus Q1] gi|221238119|gb|ACM10829.1| DNA ligase, NAD-dependent [Bacillus cereus Q1] Length = 615 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 241/656 (36%), Positives = 374/656 (57%), Gaps = 55/656 (8%) Query: 68 SEDPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 SED P ++GG + L +F KVTH P LSL +N DLR F R+ Q DD ++ Sbjct: 2 SEDS--PSVRVGGTV-LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVR---QGIDDANV 55 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + E KIDG +++ YEKG+F+ A RGDG +GED++ ++ I IP L LN +E Sbjct: 56 RYICELKIDGLAVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIP--LRLNEEVTLE 113 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 RGE Y+ K F+ LN+E G +ANPRNAA+G +R+L+P R L+ FV+GL Sbjct: 114 ARGEAYMPKRSFVKLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLAN 173 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 E E L + LGF N R T +++Y E + R L Y+IDG+V K Sbjct: 174 VEEKTILSHSESLDFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIK 233 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ +LQ+ LG A+SPRW I++KF ++ TRL I++ +GRTG++TP A LEPV + G Sbjct: 234 VDDVALQESLGTTAKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAG 293 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A+LHNED I+ +DIR+GD V+VK+AG++IP+VV+++ ++R + Sbjct: 294 TIVRRASLHNEDLIR-----------EKDIRIGDYVVVKKAGDIIPEVVNVLFDKRTGEE 342 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + + P+ CP C+S +VR L + A RC C AQ E L HFVSR+A NI+G Sbjct: 343 EEYHMPTHCPACESELVR-LEEEV-----ALRCINP-TCPAQIREGLIHFVSRNAMNIDG 395 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ + F+++ IR AD+++L + Q + FG+ S TNL +I Sbjct: 396 LGERVITQLFEAD----YIRTFADLYSLTKEQLLQLER------FGEKSATNLVQAIENS 445 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + SLER +F LGIRHVGA+ AR+ A+++ + + + N+ +G Sbjct: 446 KENSLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEELKAINE----------IG 495 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQ 659 + +AQ++V ++ N ++ + KE ++ +NV S K +V TG L+ Sbjct: 496 EKMAQSVVAYFDN-EDVLELLQQFKEYGVNMTYKGMKIADLQNVESYFAGKTVVLTGKLE 554 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R +A++ + LG V+ +S+ TD+++ G+ GSKL +A++ V++ NEE+FL Sbjct: 555 VMGRSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNEERFL 610 >gi|46907988|ref|YP_014377.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes serotype 4b str. F2365] gi|81565576|sp|Q71YR0|DNLJ_LISMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|46881258|gb|AAT04554.1| DNA ligase, NAD-dependent [Listeria monocytogenes serotype 4b str. F2365] Length = 671 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 255/710 (35%), Positives = 380/710 (53%), Gaps = 64/710 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N EDL F RI + K + I + E KIDG Sbjct: 62 GGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRI----RDKVGDDIAYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YE GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K F Sbjct: 118 VSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 LN+ G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAG 235 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L + LG VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G Sbjct: 236 LDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGN 295 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNED Sbjct: 296 TVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNED 355 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I +DIR+GD VL+K+AG++IP+V+ I +R +PF P CP C Sbjct: 356 LIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPAC 404 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 405 DSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQ 457 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I+ AD+F L S K+ + G+ SVTNL SI + SLE+ +F L Sbjct: 458 ----HLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIQASKQNSLEKLLFGL 507 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA+ A+SLA ++ + N + ND +G+ +A +IV ++ Sbjct: 508 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSIND----------IGEKMADSIVTYFA 557 Query: 618 NPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQE 668 N V LL+E+ + G +++S E K +V TG L+K+ R+ A+ Sbjct: 558 NEE----VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFTGKTVVLTGKLEKLTRNDAKA 613 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 614 LIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|328957928|ref|YP_004375314.1| NAD-dependent DNA ligase LigA [Carnobacterium sp. 17-4] gi|328674252|gb|AEB30298.1| NAD-dependent DNA ligase LigA [Carnobacterium sp. 17-4] Length = 645 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 253/697 (36%), Positives = 386/697 (55%), Gaps = 77/697 (11%) Query: 41 PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100 P I D++YD L A+ AFPDL ++ P +IGG + KV H +P LSL Sbjct: 5 PSIPDTDYDKLYNELVALEEAFPDLISNDSPT---QRIGGTILPGFEKVVHEVPMLSLGN 61 Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160 +N DL F RI +K D + E KIDG +++ YEKGK V AA RGDG G Sbjct: 62 AFNEGDLLDFDRRI----KKITDQPFSYICELKIDGLAVSLTYEKGKLVRAATRGDGTVG 117 Query: 161 EDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220 E+V+ IR + ++P L L P IEVRGE Y+ K+ F+ LN E G +ANPRNAA Sbjct: 118 ENVTQNIRTVKSVP--LRLKNPYSIEVRGECYMPKDSFIKLNQEREENGEAIFANPRNAA 175 Query: 221 SGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFH 279 +G LR L+P + R LN F++ +G E+ A Q + L ++ LG N+ R T Sbjct: 176 AGGLRNLDPKETAKRNLNTFLYTIGDFGELTAVSQEDALHQLDELGLRTNHDRRVFQTIE 235 Query: 280 GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRL 339 + +Y E + R+ LPY+IDG+V KV+EF++Q+++G ++PRW I++KF ++A T + Sbjct: 236 EVWAYTQEFQEKRTALPYEIDGIVIKVNEFAVQEEVGFTVKAPRWAIAYKFPAEEAHTVI 295 Query: 340 LDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGD 399 DI+ +GRTG++TP A ++PV + G + A+LHNED I RDIR+ D Sbjct: 296 RDIEWSVGRTGVVTPTAIMDPVQLAGTTVQRASLHNEDLIH-----------ERDIRLLD 344 Query: 400 RVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV--------RDLNPKTGK 451 V+V +AG++IP+V +I++ER D+QP++ P+ CP C S ++ R +NPK Sbjct: 345 TVVVHKAGDIIPEVTRVILDERPEDSQPYAIPTHCPACDSDLIHLEEEVALRCMNPK--- 401 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 C AQ E L HFVSR+A NI+GLG + L F+ + + AD++ Sbjct: 402 ------------CPAQITEGLSHFVSRNAMNIDGLGIRVLMQMFEKD----MVHDVADLY 445 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL Q + KI+ + S NL ++I+ R+ SLER +F LGIRHVGA+ A+ +A Sbjct: 446 TLTFDQLVTLDKIK------EKSANNLLNAIDASRSNSLERLLFGLGIRHVGAKAAKLIA 499 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + + + + Q ++I +G+IIA+++V ++ P V L++E Sbjct: 500 ERFETMEAVQQAEKDMIISIE----------GIGEIIAESVVAYFSLPE----VNELIQE 545 Query: 632 VSPS------IGRHE---KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 + S +G+ + V S K +V TG L R +A+E + LG V+ +S Sbjct: 546 LKNSQVNMNYLGKKKVEVATVDSYFNGKTVVLTGKLTHFTREEAKERIENLGGNVTGSVS 605 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +KTD+++ G+ GSKL KA+ L + + +E+Q L L+ Sbjct: 606 KKTDLVVAGEEAGSKLAKAESLNILVWDEDQLLETLE 642 >gi|239638039|ref|ZP_04678998.1| DNA ligase, NAD-dependent [Staphylococcus warneri L37603] gi|239596322|gb|EEQ78860.1| DNA ligase, NAD-dependent [Staphylococcus warneri L37603] Length = 668 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 252/703 (35%), Positives = 394/703 (56%), Gaps = 62/703 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L L + SY YY P + DSEYD L I P+ + P+ P ++G Sbjct: 10 DLHDLLNQYSYE---YYVQDNPSVPDSEYDKLLHELIHIESEHPEF---KTPDSPTVRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N EDLRKF RI +++ ++ + E KIDG + Sbjct: 64 GEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RENIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++YE G+FV RGDG +GED++ +R I IP L + P EVRGE Y+ + F+ Sbjct: 119 SLKYENGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKIKEPLNFEVRGEAYMPRKSFM 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E G +P+ANPRNAA+G LR+L+ R L+ F++ + ++ A Q L Sbjct: 177 NLNEEKEKNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSIFLYSINDFTDFEATTQSGAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N+ + + G++ Y + + R LPYDIDG+V KV++ Q ++G Sbjct: 237 DELDELGFKTNHERERVSDIDGVLKYIEKWTAEREMLPYDIDGIVIKVNDLEQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I++ R DA+ + P+ CP C Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVRSIIDRRPEDAETYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++++ Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLIEGLIHFVSRQAMNIDGLGTKIIQQLYEND 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L+ ++ G V NL ++I + ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLEEEDLLPLERM------GSKKVENLLEAIKQAKSQSLEHLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + +R LA+ Y + ++ ++ ++ LI + +G +AQ++V + +N Sbjct: 509 IRHLGVKASRVLAEKY-------ETMDRLLTVTEEE---LIAIHDIGGKLAQSVVTYLEN 558 Query: 619 PRNICAVEALLKEVSPSIGRHEKNV-SSEIE------NKKLVFTGTLQKIQRHKAQEYVT 671 +I A+ LK+ + K V ++EIE K +V TG L+++ R++A +++ Sbjct: 559 D-DIRALIQKLKD--KDVNMTYKGVKTTEIEGHPDFSGKTIVLTGKLEQMTRNEASQWLQ 615 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 GA V+ +++ TDI+I G + GSKL KA++ G +I EE+F Sbjct: 616 MQGAKVTNSVNKSTDILIAGADAGSKLTKAEKFGTEIWTEEEF 658 >gi|298528094|ref|ZP_07015498.1| DNA ligase, NAD-dependent [Desulfonatronospira thiodismutans ASO3-1] gi|298511746|gb|EFI35648.1| DNA ligase, NAD-dependent [Desulfonatronospira thiodismutans ASO3-1] Length = 679 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 262/713 (36%), Positives = 385/713 (53%), Gaps = 61/713 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +EI+ H+ YY P+I D EYD + + P L S P K+G Sbjct: 15 LRREINLHNYYYYVLDDPLISDVEYDRMLAELKDLEEKHPGLKHS---GSPTMKVGAPPA 71 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 HS+P SL+ +++E++R+F+ RI + + D +F EPK+DG + I Y Sbjct: 72 GQFEHREHSLPMYSLDNSFSLEEVREFVQRIKK---QIPDADPYFWAEPKLDGLAVEIIY 128 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEVYISKNDFLAL 201 E G FV A+ RGDG+ GEDV+ IR I +P L PE +EVRGEV I + +F L Sbjct: 129 ENGLFVAASTRGDGYVGEDVTDNIRTIRNLPLTLFYTEFFPEYLEVRGEVVIPRQEFTRL 188 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT---SEIFAKGQYEM 257 N++ G K +ANPRNAA+G +R+L+ +R + FF +G G + S + Q E+ Sbjct: 189 NEDKARKGEKVFANPRNAAAGSVRQLDSRITASRPVYFFSYGTGISRFKSGAGWQSQEEI 248 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 + + LG PV G R + Y E R ++IDGLV KV++ LQ++LG Sbjct: 249 ARGLNALGLPVVPGGRICRDPAEVEECYREQLDRREQSDFEIDGLVIKVNDIGLQQRLGF 308 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PRW ++ KF Q T+L DI +Q+GRTG+LTPVA LEP+N+GG +++ A+LHNE+ Sbjct: 309 TSRAPRWAMAVKFPALQGRTKLKDIQVQVGRTGVLTPVAILEPLNLGGVVVSRASLHNEN 368 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +D++VGD VLV+RAG+VIP+VV ER + F FP CP C Sbjct: 369 EIR-----------AKDLKVGDTVLVQRAGDVIPEVVRPETRERDGTQKEFVFPEKCPAC 417 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS V R + AA RC ++C A+ ++L +F + +IEGLG+Q + K Sbjct: 418 QSPVARIDDE------AAIRCL-NMSCPARLEQQLIYFAGKQGLDIEGLGRQWIKVLVKK 470 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN-KRRNISLERFIFS 556 + PADIF L K+ G N+ DSI + +L R I + Sbjct: 471 G----LLCSPADIFRLSLDDLLPLDKM------GRKLAQNMLDSIRLAAQKATLPRLIAA 520 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG E A+ LA Y A N SL + +G +A +I F+ Sbjct: 521 LGIRHVGVETAKRLAANYKDLDELAAAEKN----------SLQMIEDIGPEVASSIAGFF 570 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQRHKAQEYVT 671 NP+N LL+E IG ++ ++ E+ KKLVFTG + + R +A+E V Sbjct: 571 ANPQN----RKLLEEFK-EIGLWPEHAAAAGEDLPLKGKKLVFTGGMHNLSRDRAREIVE 625 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +LG VS +S TD++I GDNPGSKL KA++LG+ I++E++FL L++ ++ + Sbjct: 626 KLGGKVSGSVSGNTDMVIAGDNPGSKLSKARELGLDILSEQEFLDLIENWSAS 678 >gi|49484145|ref|YP_041369.1| DNA ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257426036|ref|ZP_05602458.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus 55/2053] gi|257428709|ref|ZP_05605104.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus 65-1322] gi|257431319|ref|ZP_05607695.1| DNA ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257434037|ref|ZP_05610388.1| DNA ligase [Staphylococcus aureus subsp. aureus E1410] gi|282904535|ref|ZP_06312420.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus C160] gi|282906308|ref|ZP_06314160.1| DNA ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282909224|ref|ZP_06317040.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911529|ref|ZP_06319329.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus WBG10049] gi|282925143|ref|ZP_06332803.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus C101] gi|283958665|ref|ZP_06376111.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus A017934/97] gi|293507779|ref|ZP_06667621.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus 58-424] gi|293510281|ref|ZP_06668987.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M809] gi|293539336|ref|ZP_06672015.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M1015] gi|295428486|ref|ZP_06821113.1| DNA ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590042|ref|ZP_06948682.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus MN8] gi|81650789|sp|Q6GFF3|DNLJ_STAAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49242274|emb|CAG40981.1| DNA ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271179|gb|EEV03336.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus 55/2053] gi|257274353|gb|EEV05865.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus 65-1322] gi|257277968|gb|EEV08624.1| DNA ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257280963|gb|EEV11107.1| DNA ligase [Staphylococcus aureus subsp. aureus E1410] gi|282313101|gb|EFB43499.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus C101] gi|282324538|gb|EFB54850.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus WBG10049] gi|282326792|gb|EFB57089.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330505|gb|EFB60022.1| DNA ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595091|gb|EFC00058.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus C160] gi|283789705|gb|EFC28527.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus A017934/97] gi|290919871|gb|EFD96940.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M1015] gi|291094842|gb|EFE25110.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus 58-424] gi|291466645|gb|EFF09165.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M809] gi|295127468|gb|EFG57107.1| DNA ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577170|gb|EFH95884.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus MN8] gi|312437629|gb|ADQ76700.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus TCH60] gi|315193434|gb|EFU23831.1| DNA ligase [Staphylococcus aureus subsp. aureus CGS00] Length = 667 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 250/702 (35%), Positives = 385/702 (54%), Gaps = 58/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTVDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +DLRKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y G FV RGDG +GED++ ++ I IP L + P +EVRGE Y+ + FL Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E L Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + + G++ Y + S R +LPYDIDG+V KV++ Q ++G Sbjct: 237 DELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I R DA + P+ CP C Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++SE Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L ++ G V NL +I + ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + ++ LA+ Y + I+ ++ + L+ + +GD +AQ++V + +N Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558 Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +I A+ LK+ + I + E K +V TG L ++ R++A +++ Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659 >gi|259047691|ref|ZP_05738092.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175] gi|259035882|gb|EEW37137.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175] Length = 668 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 243/720 (33%), Positives = 392/720 (54%), Gaps = 84/720 (11%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ +++L+ E YY KP D+EYD A+ P+ ++ P Sbjct: 11 IEQLKEQLNRWSHE-------YYVEDKPTATDAEYDKAYHELLALEKEHPEFVTADSPT- 62 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GGE+ KVTH+ P LSL ++ EDL +F R+ +K + +I + E K Sbjct: 63 --QRVGGEVLEQFQKVTHTNPMLSLSNAFSKEDLEEFDARL----RKLTNRAIEYVCELK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I + Y+ G+ A RGDG +GEDV+ +R I ++P LSL P IEVRGE Y+ Sbjct: 117 IDGLSIALTYQNGQLQLGATRGDGTTGEDVTGNVRTIKSVP--LSLKEPWNIEVRGECYM 174 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 K F+ALN G + +ANPRNAA+G LR+L+P R L+ F++ E+ Sbjct: 175 PKKSFVALNKSREEEGLEVFANPRNAAAGSLRQLDPKIAAKRNLSVFLYSSPSVEELNVS 234 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E+L+KM +GF N + T + +Y + + R LPY+IDG+V KV++F+ Q Sbjct: 235 TQEELLRKMAEIGFVTNPERLKCQTIDEVWNYIETIGAKRQELPYEIDGMVIKVNDFATQ 294 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G ++PRW I++KF ++A T + D++ +GRTG++TP A ++PV + G + A+ Sbjct: 295 EEIGYTVKAPRWAIAYKFPAEEAQTVVRDVEWTVGRTGVVTPTAVMDPVQLAGTTVRRAS 354 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D +K RDIR+ D V++ +AG++IP+V +I+ +R +QP+ FP+ Sbjct: 355 LHNIDLMK-----------ERDIRLEDTVVIHKAGDIIPEVTRVILEKRPATSQPYEFPT 403 Query: 433 FCPICQSRV--------VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 CP+C ++ +R LNPK C AQ E + HFVSR+A N+ Sbjct: 404 TCPVCHEKLEHLEDEVAIRCLNPK---------------CPAQLTEGMSHFVSRNAMNMS 448 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + FF+ E + AD++ L Q KI+ S N+ ++I Sbjct: 449 GIGPSIIKQFFE-EGLVLDV---ADLYKLTLDQLLELDKIQQ------KSAENILEAIEN 498 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + SLER + LGIRHVG + A+ LA+++ N+ A L+ + + Sbjct: 499 SKANSLERLLTGLGIRHVGTKAAKELAQHF----------ENMKALQEASIEQLLEIDGL 548 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFT 655 GDIIA ++ +++ P +V+ L++E+ +G+ + + + + K +V T Sbjct: 549 GDIIAYSVKTYFEQP----SVQELIQELQDRGVNMSYLGKTKADSEASGHILSGKTVVLT 604 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL+++ R A+E + LGA V+ +S+KTD++I G + GSKL+KA LG+++ +E+QFL Sbjct: 605 GTLEQLTRQDAKEKLESLGAKVTGSVSKKTDVVIAGYSAGSKLDKANSLGIEVWSEQQFL 664 >gi|16800936|ref|NP_471204.1| NAD-dependent DNA ligase LigA [Listeria innocua Clip11262] gi|81526387|sp|Q92AQ0|DNLJ_LISIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|16414371|emb|CAC97100.1| lin1870 [Listeria innocua Clip11262] Length = 671 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 257/711 (36%), Positives = 382/711 (53%), Gaps = 66/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N +DL F RI + K + I + E KIDG Sbjct: 62 GGEVLEGFKKVEHDTPMLSLANAFNRDDLADFDRRI----RDKVGDDISYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YE GK+ A RGDG GED++A +R I +IP + L IEVRGE ++ K F Sbjct: 118 VSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIP--MKLKKAYSIEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R + + +Y +E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCSNLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGSEKPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L S K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 ----MHLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N + ND +G+ +A +IV ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKIADKETLTSIND----------IGEKMADSIVTYF 556 Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667 N V LL+E+ + G +N+S E K +V TG L+K+ R+ A+ Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLENMSEEELVFAGKTVVLTGKLEKLTRNDAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|222529603|ref|YP_002573485.1| DNA ligase, NAD-dependent [Caldicellulosiruptor bescii DSM 6725] gi|254781543|sp|B9MK54|DNLJ_ANATD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222456450|gb|ACM60712.1| DNA ligase, NAD-dependent [Caldicellulosiruptor bescii DSM 6725] Length = 673 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 248/703 (35%), Positives = 391/703 (55%), Gaps = 49/703 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 RK + L I+YHD YY P I D EYD L R + +P+ P+ P + Sbjct: 6 RKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSPTQR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ +V H +P LSL ++N +L F R+ + + + +E KIDG Sbjct: 63 VGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELIGTSNFD---YVVEYKIDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G F+ A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K++ Sbjct: 120 SVALEYENGLFIRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMPKDE 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F+ LN E +ANPRNAA+G LR+L+P R L+ FV + + E + + Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNI-QWCEKELETHAQ 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ LGF V+ +++ R LP++IDG V K+++ L+ G Sbjct: 237 ALEFLKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 E A+SPRW +++KF ++ T+LLDI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 ETAKSPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCT G+ C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + N+ FG S NL +I +N L+R I++ Sbjct: 459 KG----LIKTPADIYYLKFED------LVNLERFGVKSTNNLLKAIQASKNRPLDRLIYA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S I+++ + L L P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEEQLLCL---PDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + +E LK + +K S ++ V TG L K R++A+E + LGA Sbjct: 559 RQEQTRHLIER-LKAAGVNTVSEKKAKSDILKGYTFVLTGALSKYSRNEAKEILESLGAK 617 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT +IVG +PGSK KAQQLGVKI+NEE F L++ Sbjct: 618 VTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK 660 >gi|329576880|gb|EGG58365.1| DNA ligase [Enterococcus faecalis TX1467] Length = 676 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 243/713 (34%), Positives = 396/713 (55%), Gaps = 55/713 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLIT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ + K + + Sbjct: 62 -PDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGK----PVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+LQ +LG ++PRW I++KF ++A T + DI+ I TG++TP A + PV + G + Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIDCTGVVTPTAVMAPVRVAGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN D+I+ +DIR+ D V++ +AG++IP+V ++V +R D+QP+ Sbjct: 355 SRASLHNADFIQ-----------MKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPY 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NI+GLG Sbjct: 404 EMPTHCPICHSELVH-LDEEV-----ALRCINP-KCPAQIKEGLNHFVSRNAMNIDGLGP 456 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + L + D ++ AD++ L Q + KI+ + S N+Y +I + Sbjct: 457 RVLAQMY---DKGL-VKDVADLYFLTEEQLMTLDKIK------EKSANNIYTAIQGSKEN 506 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER IF LGIRHVGA+ A+ LA+++ ++ ++ + +G+ I Sbjct: 507 SVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSRATAE----------EIVALDSIGETI 556 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEK--NVSSEIENKKLVFTGTLQKIQ 662 A ++V +++N + + A L++ ++ R E+ V S ++K +V TG L + Sbjct: 557 ADSVVTYFEN-EEVHELMAELEKAQVNLTYKGLRTEQLAEVESPFKDKTVVLTGKLTQYT 615 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LG V+ +S+KTDI++ G++ GSKL KA+ LGV + NE++ + Sbjct: 616 REEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVSVWNEQEMV 668 >gi|218289368|ref|ZP_03493602.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1] gi|218240474|gb|EED07655.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1] Length = 684 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 248/723 (34%), Positives = 389/723 (53%), Gaps = 64/723 (8%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ALS+E+AR L ++I YH+ YY P I D+E+DAL R + +P+L D Sbjct: 9 ALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELV---D 65 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P P ++G KV H +P LSL ++ EDL + R+ ++ + + + Sbjct: 66 PASPTQRVGAPALEGFAKVVHEVPMLSLSNAYSTEDLLDWDRRV----RQAVGDDVRYVC 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + +RY+ G+ V A RGDG GED++A IR I +P L L+ P +EVRGE Sbjct: 122 ELKVDGLAVALRYQDGRLVLGATRGDGSVGEDITANIRTIRNVP--LELSEPVSLEVRGE 179 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 Y+ K +F+ LN+ G +ANPRNAA+G LR+L+P +R L V+ L + Sbjct: 180 AYMPKREFMRLNELREQQGEPLFANPRNAAAGSLRQLDPAVAASRRLGVIVYQLVRAEAH 239 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + L + LG P + +++Y R LPY DG+V KVD Sbjct: 240 GCETHSQALDYVARLGLPAHRERHVCANIEDVIAYIEAWADKRHELPYATDGMVVKVDSL 299 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ +LG A+SPRW I++K+A +QA T L I++ +GRTG++TP A +PV + G ++ Sbjct: 300 ALQSRLGATAKSPRWAIAYKYAAEQAETTLRAIELNVGRTGVVTPTAVFDPVQLAGTTVS 359 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED ++ +DIRVGD ++V++AG++IP+V+ + R F Sbjct: 360 RASLHNEDLVR-----------EKDIRVGDVIVVQKAGDIIPEVIRSLPERRTEPLPEFR 408 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C SR+VR L+ + A RC C A E L HF SRDA NIEGLG+Q Sbjct: 409 MPETCPQCGSRLVR-LDGEV-----AWRCINP-DCPALLREGLIHFCSRDAMNIEGLGEQ 461 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + D +R AD++ L++ ++ GD L +I + + S Sbjct: 462 WITVLL---DRGL-VRTHADLYRLRKSDLIQLDRM------GDKLADKLLHNIQESKRNS 511 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER +F LGIRHVG + A++LA+++ + I+ +++ + ++ L+ VP +G +A Sbjct: 512 LERLLFGLGIRHVGEKAAKTLAEHFGT-------IDALMSASEEE---LMAVPDIGPKVA 561 Query: 610 QAIVEFYQNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 Q+I +++ PR V L++E V+ + +K + K +V TG LQ R Sbjct: 562 QSIRQYFDTPR----VRQLIQELKDLGVNMTYLGPQKVSDGPLAGKTVVLTGVLQAADRK 617 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFL 717 +A E++ ++G V++ +S KTD++I GD GSKL KAQ++ ++I +E FL L Sbjct: 618 QATEWIERMGGKVASSVSAKTDVLIAGDKAGSKLAKAQEILRNHPDAKLEIWDEAAFLRL 677 Query: 718 LQQ 720 + + Sbjct: 678 VDE 680 >gi|194016164|ref|ZP_03054779.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061] gi|194012519|gb|EDW22086.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061] Length = 668 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 244/714 (34%), Positives = 405/714 (56%), Gaps = 57/714 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A++ + L Q ++ ++ Y+ +P + D+EYDA R ++ PDL ++ P+ Sbjct: 4 EAAKRRIEELHQILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAADSPS-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + + KV H P LSL +N +DL F R+ ++ + I + +E KI Sbjct: 62 -QRVGGAVLDAFQKVRHGTPMLSLGNAFNEQDLLDFDRRV----RQAVGDDIAYNVELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I +IP L + P IEVRGE ++ Sbjct: 117 DGLAVSLRYENGLFVRGATRGDGTTGEDITENLKTIRSIP--LKIKRPLSIEVRGEAFMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252 K F ALN++ + +P+ANPRNAA+G LR+L+ T I R L+ FV+ + + EI + Sbjct: 175 KPSFEALNEKRLQNEEEPFANPRNAAAGSLRQLD-TKIAAKRNLDIFVYSIAELDEIGVE 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L + LGF N R T ++ +K+ R+ Y+IDG+V KVD + Q Sbjct: 234 SQSEGLDLLDELGFKTNKERRMCQTIEEVIELIETLKTKRADFSYEIDGIVIKVDSLAQQ 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG A+SPRW +++KF ++ T+LLDI++ +GRTG++TP A LEPV + G + A+ Sbjct: 294 EELGFTAKSPRWAVAYKFPAEEVVTKLLDIELSVGRTGVITPTAILEPVKVAGTTVQRAS 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED IK +DIR+ D+V+VK+AG++IP+VV +++++R + +PF P+ Sbjct: 354 LHNEDLIK-----------EKDIRLFDQVIVKKAGDIIPEVVGVLIDQRTGEEKPFHMPT 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 403 ECPECHSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVIT 455 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F+ + R+ +D++ L + + ++ G+ SV NL SI + + SLER Sbjct: 456 QLFQEQ---LVSRV-SDLYRLTKEELIQLERM------GEKSVDNLLRSIEQSKENSLER 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIR +G++ A++LA ++ Q + L+ V +G+ +A A+ Sbjct: 506 LLFGLGIRFIGSKAAKTLAMHFGDIDQLKQATKD----------QLLEVDEIGEKMADAV 555 Query: 613 VEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 V +++ + + L + P + E++ S K +V TG L+++ R+ A Sbjct: 556 VTYFEKEEILNLLNELKELGVNMTYTGPKPVKVEES-DSYFAGKTIVLTGKLEEMARNDA 614 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LG ++ +S+KTD++I G+ GSKL KA++L ++I +E + L L++ Sbjct: 615 KTAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDEAKMLEELKK 668 >gi|82751560|ref|YP_417301.1| DNA ligase [Staphylococcus aureus RF122] gi|123754599|sp|Q2YU70|DNLJ_STAAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|82657091|emb|CAI81528.1| DNA ligase [Staphylococcus aureus RF122] Length = 667 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 250/702 (35%), Positives = 384/702 (54%), Gaps = 58/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +DLRKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y G FV RGDG +GED++ ++ I IP L + P +EVRGE Y+ + FL Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E L Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q ++G Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I R A + P+ CP C Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEGAVTYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++SE Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L ++ G V NL +I + ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + ++ LA+ Y + I+ ++ + L+ + +GD +AQ++V + +N Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558 Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +I A+ LK+ + I + E K +V TG L ++ R++A +++ Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659 >gi|27262356|gb|AAN87459.1| NAD-dependent DNA ligase [Heliobacillus mobilis] Length = 677 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 241/711 (33%), Positives = 391/711 (54%), Gaps = 54/711 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A + L + I +H+ YY P I D++YDAL R AI +P+L ++ P Sbjct: 16 EAEVRVKELREIIRHHEYRYYVLDAPEITDADYDALMRELQAIEDTYPELVEADSPT--- 72 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG+ + V H +P LSL ++ DLR+F R +++ + + +EPKID Sbjct: 73 RRVGGQPLAAFNSVRHRVPLLSLANAFDEHDLREFDRRA----RERAGRDLTYVVEPKID 128 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + YE+G+FV A RGDG +GED++ ++ I TIP L ++P +++VRGE Y+ K Sbjct: 129 GLTVVLTYEQGRFVRGATRGDGETGEDITENLKTIRTIPLRLKTDLP-VLDVRGEAYLPK 187 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN+E G +ANPRNAA+G LR+L+P +R L F + + A+ Q Sbjct: 188 GAFATLNEEREERGEPVFANPRNAAAGSLRQLDPKVTASRPLRAFFYNILLLEGAEAQEQ 247 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + L+ + G PVN + + +++Y R LP++IDG+V KV+E ++ Sbjct: 248 RQALELIEQWGLPVNKERKFCLSIEEVIAYCRYWTEHRHDLPFEIDGMVVKVNELDEYER 307 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++SPR+ I+ KF +QA T++ I +++GRTG++TP A LEPV + G ++ ATLH Sbjct: 308 LGVTSKSPRYAIAFKFPAEQAVTQVRSITVKVGRTGVITPTAELEPVRVAGTTVSRATLH 367 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED I+ +DI VGD V++++AG++IP+VV ++ R + QPFS P C Sbjct: 368 NEDIIR-----------EKDIHVGDYVIIQKAGDIIPEVVSVLKERRTGEEQPFSMPQAC 416 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S R G++ A RCT C AQ E L H+ SRDA NIEGLG ++ Sbjct: 417 PECGSPASR----LEGEV--ALRCTSS-TCPAQAKEGLIHYASRDAMNIEGLGPAIVNLL 469 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + + + PAD++ L + ++ + G S NL +I + ++ L F Sbjct: 470 WDT----GLVHNPADLYDL------TVDQVAPLERMGKKSAANLIAAIEQSKSRGLAAFT 519 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LG+R VG A++LA ++ S + ++A ++ L +P +G +A ++ Sbjct: 520 FALGLRLVGQTAAKTLASHFGS-------MEKLMAATQEE---LQAIPEIGPKMADSLKN 569 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKAQEYV 670 ++ P N VE +L+ V + + + + + + K +V TGTLQ + R +AQ + Sbjct: 570 YFSIPAN---VEMILRLVEKGVQMNAQQSTVDSPQTLAGKMIVLTGTLQSMDRREAQRLL 626 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 GA +S+ +S+KT ++I G+ GSKLEKA +L V ++ EE FL L+ + Sbjct: 627 EARGAKISSSVSKKTSMVIAGEEAGSKLEKALELKVPVLREEDFLKLIDHH 677 >gi|254556107|ref|YP_003062524.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1] gi|300766626|ref|ZP_07076543.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180104|ref|YP_003924232.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III] gi|254045034|gb|ACT61827.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1] gi|300495726|gb|EFK30877.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045595|gb|ADN98138.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III] Length = 679 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 239/718 (33%), Positives = 390/718 (54%), Gaps = 71/718 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++EQA E ++L Q ++ YY P + DS YD R + FP L P Sbjct: 8 MTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQLVT---P 64 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +GG + KVTH IP LSL +++ +L++F+ R+ ++ + + + E Sbjct: 65 DSPTQLVGGTVKAGFDKVTHEIPMLSLGDVFSQAELQEFVDRL----EQNVGHPVDYNCE 120 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G V + RG+G GED++A I+ I +IP+ L+ P I+VRGE Sbjct: 121 LKIDGLALSLRYEDGVLVQGSTRGNGTVGEDITANIKTIKSIPQRLTR--PLTIDVRGEC 178 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 Y+ K F ALN+ A G +ANPRNAA+G LR+L+ + R L+ F++ + + Sbjct: 179 YMPKAAFAALNERREAAGEPVFANPRNAAAGTLRQLDSRVVAERQLSTFMYNIADYEPLT 238 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A+ Q +ML + LGF +N + A++ + SY + ++ R L Y IDG+V K + Sbjct: 239 ARTQSDMLTEFADLGFAINPDFKVAHSMADVFSYIDHYQNERPELAYGIDGIVIKANPLP 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG + PRW I+ KF + T L D++ +GRTG++TP A +EPV + G + Sbjct: 299 LQRSLGATVKVPRWAIAFKFPPDEQPTLLKDVEWTVGRTGVVTPTAVMEPVQLAGTTVAR 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY+ +D+R+GD VL+ +AG++IP++ + + +R DAQP Sbjct: 359 ASLHNPDYV-----------AAKDVRIGDTVLLHKAGDIIPEISSVDLAKRPKDAQPLVI 407 Query: 431 PSFCPICQSRVV--------RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P+ CP C + +V R +NPK C AQ E L HF SR+A N Sbjct: 408 PTTCPSCGAPLVHLEDEVALRCINPK---------------CPAQVQEGLVHFASRNAMN 452 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLG + + + + R+ +D+ L R + ++ I D S L +I Sbjct: 453 IDGLGPRIIAQLYAN-------RLVSDVAGLYRLTKAQLLTLDKI---KDKSAEKLLTAI 502 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 ++ R+ SLER +F LGIRHVGA++AR +A+++ + I ++A + ++ + + Sbjct: 503 DRSRDNSLERLLFGLGIRHVGAKVARLIAQHFGT-------IEALMAASQEE---IAAID 552 Query: 603 LVGDIIAQAIVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 +GD+IA A+V+++++ R + AV PS E + +S K++V TG Sbjct: 553 SMGDVIANAVVQYFESDEVHTLIRELQAVNVNTTYQGPSATVAEDS-NSWFAGKRVVLTG 611 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 L+ R A +++ GA V+ +S+KTD++I G + GSKL+KAQQL + + +E +F Sbjct: 612 KLESFTRPDATQWLQAHGATVTGSVSKKTDLVIAGSDAGSKLQKAQQLDITVWDEARF 669 >gi|71898271|ref|ZP_00680445.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1] gi|71732010|gb|EAO34067.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1] Length = 831 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 248/683 (36%), Positives = 369/683 (54%), Gaps = 97/683 (14%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +IP++ Q EL QE +YH Y+ +P I D++YD + R DA+ +PDL Sbjct: 1 MIPLDP---AQRAAELRRRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEATYPDL 54 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 A P+ P ++G + + +V H++P LSL ++ ++ +F+ RI + + Sbjct: 55 A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRIT---AHLGETA 108 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184 F+ EPK+DG I++RY+ G F+ A RGDG +GEDV+A +R +PTIP R+ S P + Sbjct: 109 PGFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 168 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 +EVRGEVY+ + DF A N + G K ANPRN A+G LR+L+P R L+F+ +G+ Sbjct: 169 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 228 Query: 244 GK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ T ++ E+L +R GFPV+ V G+++YY M++IR TLP+DIDG+ Sbjct: 229 GEVTDDVSFHRHSEILASLRAWGFPVSPLVELVYGSEGLLNYYRRMETIRDTLPFDIDGI 288 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYK+D+ S Q ++G AR+PRW I+HKF ++ +T + I+IQIGRTG TPVARL PV Sbjct: 289 VYKLDDLSGQHEMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 348 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G +T+ATLHN D I L D+R+GD V+V+RAG+VIP+VV +I + R Sbjct: 349 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVAVITDSRP 397 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P +S P CP+C S +VR+ TG A RC+G LAC AQ+ E ++HFVSR A + Sbjct: 398 PGVTAWSMPMACPVCGSEIVRE----TG--AAVWRCSGELACPAQRKEAIRHFVSRRAMD 451 Query: 483 IEGLGKQQLDFFF--------------------------KSEDPAFSIRIPADIFTLQRR 516 +EGLG + ++ ++ P +R D T R Sbjct: 452 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 511 Query: 517 QQTSTTKIE---NILGFGDVS--------------------------VTNLYDSINKRRN 547 QQ + ++ G GDV NL +I+ R Sbjct: 512 QQLEEILLTVGVDLSGEGDVPEHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAIDHSRQ 571 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +LERF+F+LG+ HVG A++LA S+ + A II W VP +G Sbjct: 572 TTLERFLFALGMTHVGETTAKALAH---SFGDLA-----II--RQLPWPLFKCVPDIGGE 621 Query: 608 IAQAIVEFYQNPRNICAVEALLK 630 +A+AI F P N A++ L++ Sbjct: 622 VARAIGHFMDQPANQQAIDDLVE 644 Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 11/121 (9%) Query: 609 AQAIVEFYQNPRNIC-------AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 AQ++ E++Q+P NI + LL ++ PS R ++ + + +V TG L + Sbjct: 713 AQSLTEWFQSPDNISLARRLQHCCDVLLAQL-PSPDRAH---TAPLNGQSVVLTGKLASL 768 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R A + LGA + +S+KT ++ G++PGSKL+KA L V I +E + L L+QY Sbjct: 769 TREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHALHVDIWDEARLLAFLEQY 828 Query: 722 N 722 + Sbjct: 829 S 829 >gi|257436941|ref|ZP_05612983.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M876] gi|282914702|ref|ZP_06322487.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M899] gi|257283730|gb|EEV13855.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M876] gi|282321416|gb|EFB51742.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus M899] Length = 667 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 249/702 (35%), Positives = 384/702 (54%), Gaps = 58/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTVDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +D RKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFNKVNHDTPMLSLGNAFNEDDFRKFDQRI-----REQIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y G FV RGDG +GED++ ++ I IP L + P +EVRGE Y+ + FL Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E L Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + + G++ Y + S R +LPYDIDG+V KV++ Q ++G Sbjct: 237 DELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I R DA + P+ CP C Sbjct: 357 IH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCG 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++SE Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L ++ G V NL +I + ++ SLE +F LG Sbjct: 459 ----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + ++ LA+ Y + I+ ++ + L+ + +GD +AQ++V + +N Sbjct: 509 IRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN 558 Query: 619 PRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +I A+ LK+ + I + E K +V TG L ++ R++A +++ Sbjct: 559 -EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQ 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ Sbjct: 618 GAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659 >gi|116490507|ref|YP_810051.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1] gi|122277306|sp|Q04GN6|DNLJ_OENOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116091232|gb|ABJ56386.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1] Length = 684 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 255/728 (35%), Positives = 402/728 (55%), Gaps = 69/728 (9%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 Q PIE L+ QA+ E+ L E++ YY+ P + D YDA R A+ A+P Sbjct: 6 QFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALEKAYPS 65 Query: 65 LARSEDPNGPLNKIGGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKF--ITRIYRFWQK 120 LA + P + N S L KV H +P LSL +++I++L + +T Q+ Sbjct: 66 LAMPDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWDLVTTKNAGSQQ 125 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K + LE KIDG I++RYE G+ + A+ RGDG GE+V+ ++ I IP+VL N Sbjct: 126 K------YNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVL--N 177 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P IEVRGE+Y+ K F LN + G+ +ANPRNAA+G LR+L+P R+L+ F Sbjct: 178 EPLTIEVRGEIYMRKEAFADLNQQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRHLSSF 237 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + + Q ++L++ R LGFPVN+ + + + Y +E R LPY I Sbjct: 238 IYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPYGI 297 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV++ ++ +LG + PRW I++KF ++A T + DI +GRTG++TP A ++ Sbjct: 298 DGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAIMD 357 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G + A+LHN DY++ +D+R+GD V + +AG++IP+V +I+ Sbjct: 358 PVFLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVILK 406 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DAQ + P +CP C+S++V G++ A RC C AQ E L HF SR+ Sbjct: 407 KRPADAQAYPIPVYCPSCKSKLVH----VQGEV--ALRCINP-ECPAQIKEGLIHFASRN 459 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NI+GLG + ++ IR +D++ L Q T+ K F D+S NL Sbjct: 460 AMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTTLDK------FADLSSKNLI 509 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDW 595 +I++ R S+ER I +LGIR VGA+ A+ LA ++ + +N A+EI I Sbjct: 510 QAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIAEIDG------ 563 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE------N 649 VG ++A AI +++ N +V +L+ E+ + +S ++ N Sbjct: 564 --------VGQVMADAIRQYF----NSESVASLINELENFQVNFDYLTTSTVDEKNYFFN 611 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K++V TG L R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++ Sbjct: 612 KRIVLTGKLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVI 671 Query: 710 NEEQFLFL 717 NE+ F+ L Sbjct: 672 NEQDFINL 679 >gi|328950509|ref|YP_004367844.1| DNA ligase [Marinithermus hydrothermalis DSM 14884] gi|328450833|gb|AEB11734.1| DNA ligase [Marinithermus hydrothermalis DSM 14884] Length = 676 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 244/712 (34%), Positives = 388/712 (54%), Gaps = 51/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+A+K + L Q I YH+ YY P I D+EYDAL R A+ +PDL P Sbjct: 1 MTREEAKKRVLELRQAIRYHNYRYYVLDDPEISDAEYDALMRELKALEARYPDLV---TP 57 Query: 72 NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P +G M S F+ + H P SL+ +N+E++R+F R+ R + +T+ Sbjct: 58 DSPTQVVGAGMIESSFREIQHPTPLYSLDNAFNLEEVREFEARLERALGRP--GPFEYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG + + YE+G V+ A RG+G +GE+V+ + IP +PR L P +EVRGE Sbjct: 116 EYKIDGLSVNLYYEEGFLVWGATRGNGRTGEEVTQNLLTIPDVPRRLE-GAPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG-KTSE 248 VY+ ++ FL LN G P+ NPRNAA+G LR+ +P TR L + +G+G E Sbjct: 175 VYMPRDTFLKLNQAREEAGLPPFKNPRNAAAGSLRQQDPRVTATRGLRAYFYGIGLGLQE 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q E+L ++ GFPV R GI + Y + R T+P++ DG+V K++ Sbjct: 235 TGVETQAELLDYLKRAGFPVEPHARVVRGVEGIETAYQAFLAQRHTVPFEADGVVVKLNN 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q +LG A+SPRW +++KF ++ TR+L++ Q+GRTG +TPVA LEPV + G + Sbjct: 295 LAWQDELGYTAKSPRWAVAYKFPAEEKKTRVLEVIFQVGRTGRVTPVAVLEPVLLDGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + +LHNE Y++ L + +GD VLV +AG +IP+V+ ++ ER +P Sbjct: 355 SRVSLHNEAYLEEL-----------GLMLGDWVLVHKAGGIIPEVLRVLKEERTGTERPL 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C +V + GK+ HRC L C AQ ER++H+ SR A +I+GLG+ Sbjct: 404 VFPDACPACGHALVLE-----GKI---HRCPNPL-CPAQAFERIRHYASRRAMDIQGLGE 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + IR PAD++ L + S + FG+ S NL I + Sbjct: 455 RHIEQMLEK----GLIRTPADLYRLTKADLVSLER------FGEKSAENLLAQIEASKTR 504 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 LER +F+LGI VG +AR+LA+ + + ++ ++ ++ L+ V VG++ Sbjct: 505 GLERLLFALGIPQVGEALARTLARRFGT-------LDRLLEATPEE---LLEVEDVGELT 554 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+ I E +P + +E L+ S E+ S + V TG L + R + + Sbjct: 555 ARRIHETLHDPAMLELIEQ-LRAAGVSFEAKERPRSDALAGLTFVLTGELSR-PRAEVKR 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V++ +S+KT ++ G GSKL+KA++LG+ +++E L+QQ Sbjct: 613 RLEALGAKVASAVSKKTSYVVAGAGAGSKLQKARELGIPVLDEAGLEALIQQ 664 >gi|118587526|ref|ZP_01544950.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163] gi|118431977|gb|EAV38719.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163] Length = 684 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 255/728 (35%), Positives = 402/728 (55%), Gaps = 69/728 (9%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 Q PIE L+ QA+ E+ L E++ YY+ P + D YDA R A+ A+P Sbjct: 6 QFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALERAYPS 65 Query: 65 LARSEDPNGPLNKIGGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKF--ITRIYRFWQK 120 LA + P + N S L KV H +P LSL +++I++L + +T Q+ Sbjct: 66 LAMPDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWDLVTTKNAGSQQ 125 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K + LE KIDG I++RYE G+ + A+ RGDG GE+V+ ++ I IP+VL N Sbjct: 126 K------YNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVL--N 177 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P IEVRGE+Y+ K F LN + G+ +ANPRNAA+G LR+L+P R L+ F Sbjct: 178 EPLTIEVRGEIYMRKESFADLNRQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRRLSSF 237 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + + Q ++L++ R LGFPVN+ + + + Y +E R LPY I Sbjct: 238 IYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPYGI 297 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV++ ++ +LG + PRW I++KF ++A T + DI +GRTG++TP A ++ Sbjct: 298 DGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAIMD 357 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV++ G + A+LHN DY++ +D+R+GD V + +AG++IP+V +I+ Sbjct: 358 PVSLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVILK 406 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DAQ + P +CP C+S++V G++ A RC C AQ E L HF SR+ Sbjct: 407 KRPADAQAYPIPVYCPSCKSKLVH----VQGEV--ALRCINP-ECPAQIKEGLIHFASRN 459 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NI+GLG + ++ IR +D++ L Q T+ K F D+S NL Sbjct: 460 AMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTTLDK------FADLSSKNLI 509 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDW 595 +I++ R S+ER I +LGIR VGA+ A+ LA ++ + +N A+EI I Sbjct: 510 QAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIAEIDG------ 563 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE------N 649 VG ++A AI +++ N +V +L+ E+ + +S ++ N Sbjct: 564 --------VGQVMADAIRQYF----NSESVASLINELENFQVNFDYLTTSTVDEKNYFFN 611 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K++V TG L R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++ Sbjct: 612 KRIVLTGKLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVI 671 Query: 710 NEEQFLFL 717 NE+ F+ L Sbjct: 672 NEQDFINL 679 >gi|282917251|ref|ZP_06325006.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus D139] gi|283771054|ref|ZP_06343945.1| DNA ligase [Staphylococcus aureus subsp. aureus H19] gi|282318878|gb|EFB49233.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus D139] gi|283459648|gb|EFC06739.1| DNA ligase [Staphylococcus aureus subsp. aureus H19] Length = 667 Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust. Identities = 251/704 (35%), Positives = 386/704 (54%), Gaps = 62/704 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELINIEEEHPEYKTVDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +DLRKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEVYISKND 197 +++Y G FV RGDG +GED++ ++ I IP + SLN+ EVRGE Y+ + Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKESLNV----EVRGEAYMPRRS 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 FL LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E Sbjct: 175 FLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSE 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q ++G Sbjct: 235 ALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 FTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I RDIR+GD V+VK+AG++IP+VV I R DA + P+ CP Sbjct: 355 DLIH-----------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPS 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + ++ Sbjct: 404 CGHELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQ 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +E I+ ADIF L ++ G V NL +I + ++ SLE +F Sbjct: 457 NE----LIKDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + ++ LA+ Y + I+ ++ + L+ + +GD +AQ++V + Sbjct: 507 LGIRHLGVKASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYL 556 Query: 617 QNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +N +I A+ LK+ + I + E K +V TG L ++ R++A +++ Sbjct: 557 EN-EDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLA 615 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA V++ +++ TD++I G++ GSKL KAQ LG++I E+QF+ Sbjct: 616 SQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 659 >gi|16125769|ref|NP_420333.1| DNA ligase, NAD-dependent [Caulobacter crescentus CB15] gi|221234527|ref|YP_002516963.1| NAD-dependent DNA ligase [Caulobacter crescentus NA1000] gi|81535469|sp|Q9A842|DNLJ_CAUCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781280|sp|B8H5Y7|DNLJ_CAUCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|13422903|gb|AAK23501.1| DNA ligase, NAD-dependent [Caulobacter crescentus CB15] gi|220963699|gb|ACL95055.1| NAD-dependent DNA ligase [Caulobacter crescentus NA1000] Length = 783 Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust. Identities = 235/579 (40%), Positives = 334/579 (57%), Gaps = 25/579 (4%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP+ L+ QA ++L L ++ HD Y+Q P + D+EYDALKRR I FP L Sbjct: 4 IPVADLTEAQAVEDLERLADLLATHDIAYHQEDNPTVSDAEYDALKRRNLDIETRFPHLV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R N P ++G V H +P LSL+ ++ ++ +F R+ RF + ++ Sbjct: 64 RD---NSPSMRVGATRAEQFAPVEHGVPMLSLDNAFSNDEAIEFDARVRRFLRISPSETV 120 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 +T EPKIDG ++RYEKG V A RGDG GEDV+A +R I IP R+ P++I Sbjct: 121 AYTAEPKIDGLSASLRYEKGVLVQGATRGDGRVGEDVTANLRTIADIPHRLKGSGWPDVI 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY+ F A N G++ YANPRN A+G LR+++P R L FF + G Sbjct: 181 EVRGEVYVELAAFAAFNKAAEEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFFGYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 SE FA Q+ L+++ GF Q G++ Y + + +R TL +DIDG+V Sbjct: 241 LVSEGFADSQWGALERLAEWGFVTTAPPAQRVLNAQGLLDIYAQFEVLRPTLGFDIDGVV 300 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD+ LQ++LG +RSPRW I+ KF ++A T L ID+Q+GRTG +TPVARL+PV + Sbjct: 301 YKVDDLELQRRLGFVSRSPRWAIARKFPAQRARTVLEAIDLQVGRTGAITPVARLKPVTV 360 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI-IVNERH 422 GG +TNATLHN D I L D+RVGD V+++RAG+VIP++V++ + Sbjct: 361 GGVSVTNATLHNGDEIARL-----------DVRVGDTVVIQRAGDVIPQIVEVALDARPD 409 Query: 423 PDAQPFSFPSFCPI-CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P P+ FP CP Q+ + R++ +G+ RCTG AC Q++E L+HFVSR AF Sbjct: 410 PAPPPYEFPHVCPCPLQTPLAREVT-ASGQESVVRRCTGEFACPFQRVEHLRHFVSRRAF 468 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG++QL FF+ I PADIF L R + E G+G+ SV NL Sbjct: 469 DIEGLGEKQLQAFFEEG----WITEPADIFKLARDAEKLAVLRER-EGYGETSVANLVKG 523 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580 I RR I ++R I+ LG R +G + LA+ + +++ Sbjct: 524 IEARRTIGMDRMIYGLGARDIGETTSTVLARNFDRFEDL 562 Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 2/151 (1%) Query: 569 SLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +LA+ Y ++ FA + DD+L L + VG + AQ++ F+ N V Sbjct: 632 ALAQRYGTWDAFADGLVAAASGAPGDDYLHLAAIDGVGPVAAQSLARFFAEDHNRQKVAN 691 Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 L+ E+ K + + K +VFTG+L+K+ R +A+ LGA V++ +S+KTD+ Sbjct: 692 LVAELDIQPVAKPKT-DTAVAGKTIVFTGSLEKMTRDEAKAQAEGLGAKVASSVSKKTDL 750 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ G GSKL+ A LG+++M E+++L L+ Sbjct: 751 VVAGPGAGSKLKTATDLGIQVMTEDEWLELV 781 >gi|290889907|ref|ZP_06552994.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429] gi|290480517|gb|EFD89154.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429] Length = 684 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 255/728 (35%), Positives = 402/728 (55%), Gaps = 69/728 (9%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 Q PIE L+ QA+ E+ L E++ YY+ P + D YDA R A+ A+P Sbjct: 6 QFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALEKAYPS 65 Query: 65 LARSEDPNGPLNKIGGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKF--ITRIYRFWQK 120 LA + P + N S L KV H +P LSL +++I++L + +T Q+ Sbjct: 66 LAMPDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWDLVTTKNAGSQQ 125 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K + LE KIDG I++RYE G+ + A+ RGDG GE+V+ ++ I IP+VL N Sbjct: 126 K------YNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVL--N 177 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P IEVRGE+Y+ K F LN + G+ +ANPRNAA+G LR+L+P R+L+ F Sbjct: 178 EPLTIEVRGEIYMRKEAFADLNRQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRHLSSF 237 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + + Q ++L++ R LGFPVN+ + + + Y +E R LPY I Sbjct: 238 IYYTAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPYGI 297 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV++ ++ +LG + PRW I++KF ++A T + DI +GRTG++TP A ++ Sbjct: 298 DGVVVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAIMD 357 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G + A+LHN DY++ +D+R+GD V + +AG++IP+V +I+ Sbjct: 358 PVFLAGTKVKRASLHNPDYLQ-----------EKDVRIGDTVTLHKAGDIIPEVGQVILK 406 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DAQ + P +CP C+S++V G++ A RC C AQ E L HF SR+ Sbjct: 407 KRPADAQAYPIPVYCPSCKSKLVH----VQGEV--ALRCINP-ECPAQIKEGLIHFASRN 459 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NI+GLG + ++ IR +D++ L Q T+ K F D+S NL Sbjct: 460 AMNIDGLGPRVVEQLLSKN----LIRKISDLYALTESQLTTLDK------FADLSSKNLI 509 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDW 595 +I++ R S+ER I +LGIR VGA+ A+ LA ++ + +N A+EI I Sbjct: 510 QAIDRSRQNSVERLITALGIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIAEIDG------ 563 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE------N 649 VG ++A AI +++ N +V +L+ E+ + +S ++ N Sbjct: 564 --------VGQVMADAIRQYF----NSESVASLINELENFQVNFDYLTTSTVDEKNYFFN 611 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K++V TG L R + Q ++ + GA VS+ +S KTD++I G + GSKLE+A +LG+K++ Sbjct: 612 KRIVLTGKLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKLERANKLGIKVI 671 Query: 710 NEEQFLFL 717 NE+ F+ L Sbjct: 672 NEQDFINL 679 >gi|122879187|ref|YP_201049.6| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzae KACC10331] gi|166216280|sp|Q5H057|DNLJ_XANOR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 841 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 270/863 (31%), Positives = 429/863 (49%), Gaps = 184/863 (21%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE+AR+ L + I D YY + P I D++YD L R + +P+L ++ P+ Sbjct: 6 IERARE----LRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTADSPS- 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GG + S KV HSIP LSL ++ +++ F+ RI+R + N + F++EPK Sbjct: 61 --MRVGGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFR--RMGSSNPLEFSVEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++RYE GKFV RGDG GEDVS IR I ++P ++ N+P I+EVRGEVY Sbjct: 117 FDGLAISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEVRGEVY 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG------- 244 + ++ F N +A G K ANPRN A+G LR+L+ R L+FF +G+G Sbjct: 177 MPRDGFSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLIQVEQD 236 Query: 245 ---KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + + A ML ++R GFPV++ V G+++YY + R LP+DIDG Sbjct: 237 LFEEIPQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYK+D+ + Q+++G +R+PRW ++HKF ++ ST + I+IQIGRTG TPVARL+PV Sbjct: 297 VVYKLDDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPV 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 ++ G ++TNATLHN D I LD +RVGD V+V+RAG+VIP+V ++ ++R Sbjct: 357 HVAGVIVTNATLHNADQIARLD-----------VRVGDTVIVRRAGDVIPEVAAVVADQR 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P Q + P+ CP+C S +VR+ G+ A RC+G L C AQ+ E +HFVSR A Sbjct: 406 PPATQSWQMPTQCPVCGSEIVRE----EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAM 459 Query: 482 NIE-------------GLGKQQLDFFFKSEDPAFSIRI-----PADIFTLQRRQQTST-- 521 +++ G+ + D + + D +R+ F + R+ ++ Sbjct: 460 DVDGLGEKFIEVLVDSGVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGA 519 Query: 522 -TKIE-NILGFG-DVS--------------------------------VTNLYDSINKRR 546 ++E ++G G D++ NL ++I R Sbjct: 520 YAQLEATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSR 579 Query: 547 NISLERFIFSLGI---------------------RH-----------VGAEIARSLAKYY 574 + +LERF+F+LGI RH +G E+ARSL ++ Sbjct: 580 DTTLERFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFF 639 Query: 575 LSYQNFAQEINNIIAHNN------------------DDWLSLIRVPLVGDI--------- 607 N + I++++A + L + +P V I Sbjct: 640 DQPGN-QKAIDHLLARKVRIGDTHPPSPKLRGELRLANLLEDLEIPKVTPIRAAQIATAF 698 Query: 608 ----------------------IAQAIVEFYQNPRN-ICAVEA-----LLKEVSPSIGRH 639 +A+++ + P N AV+A L + P G Sbjct: 699 GSIDALRNGGPEPLVEAGVPQSVAESLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEE 758 Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 + + ++ + +V TGTL + R A++ + LGA V+ +S+KT ++ G+ GSKL+ Sbjct: 759 K---TGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLD 815 Query: 700 KAQQLGVKIMNEEQFLFLLQQYN 722 KAQ LGV+I +E + L L ++ Sbjct: 816 KAQSLGVEIWDEARLLAFLGEHG 838 >gi|86605509|ref|YP_474272.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab] gi|123765626|sp|Q2JW63|DNLJ_SYNJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86554051|gb|ABC99009.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab] Length = 673 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 241/701 (34%), Positives = 385/701 (54%), Gaps = 54/701 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQ +EL +L Q+ S YY + PI+ DS YD L R + A+P+L P+ Sbjct: 5 LEQRARELRALLQKASI---AYYVHDAPILEDSVYDRLYRELQELERAYPELI---TPDS 58 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEP 132 P ++G + V+H IP SLE +N+E+L+++ R++R + ++ + + E Sbjct: 59 PTQRVGEKPAEQFPTVSHRIPLYSLENAFNLEELKEWQERLWRVLGRTPEEGELEYVCEL 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 KIDG + + Y G A RGDG SGED++ IRAIP+IP R+ + P ++EVRGE Sbjct: 119 KIDGAALALTYVDGLLQRGATRGDGQSGEDITPNIRAIPSIPLRLATAAPPPVLEVRGEA 178 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL----GKT 246 Y+ +F +N E + G P+ANPRN A+G LR+L+ + R L+FF + L G Sbjct: 179 YLPIAEFERINRERCSAGDPPFANPRNCAAGTLRQLDSRVVAARKLSFFAYALHWPEGWP 238 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S + Q+E LQ+++ LG PVN + +V +Y + ++ LPY DG+V K+ Sbjct: 239 SGDPPQTQWECLQRLKDLGLPVNPLSQVCRGLEEVVQFYERWR--QAQLPYACDGVVVKL 296 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + LQ++ G + PRW I+ K+ ++ TR+ I +GRTG +TPVA LEPV + G Sbjct: 297 NSLRLQEEAGFTQKFPRWAIALKYPAQEVPTRIRAIVASVGRTGAVTPVAELEPVLLAGT 356 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ A+LHN D ++ L D+ +GD +V++AGE+IP+VV I+ R PDA Sbjct: 357 TVSRASLHNADRLEEL-----------DVHIGDTAIVRKAGEIIPEVVGILKELRPPDAV 405 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ PS CP C + +VR G+ + RC AC A+ +L+H+ SRDA +IEGL Sbjct: 406 PYRLPSHCPECGTLLVR----PAGEAIT--RCPNP-ACPAKIRGQLQHWASRDAMDIEGL 458 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++++ + +R AD++ L + +E++ G G S L +I + R Sbjct: 459 GEKRVAQLVEK----LGVRTVADLYRL------TPEHLESLEGMGSRSSQKLVQAIQRSR 508 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 ER ++ LGI HVG A+ LA+++ + + AQ IA +G Sbjct: 509 QQPWERVLYGLGIPHVGVVTAQILAQHFPAPELLAQARAEDIAQIYG----------IGA 558 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHK 665 IA+A+V ++ +P + ++ L + P++ R VS + KK V TGTL + R + Sbjct: 559 EIAEAVVAWFADPAHQKLLQELRELGIPALPRQAAPAVSQVLAGKKFVITGTLPTLSRQQ 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 A+ ++ G V+A +SR+TD ++VG +PGSKL++AQ LG+ Sbjct: 619 AKAWIESRGGKVTASVSRQTDYVVVGSDPGSKLKQAQALGI 659 >gi|302037359|ref|YP_003797681.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii] gi|300605423|emb|CBK41756.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii] Length = 675 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 242/711 (34%), Positives = 387/711 (54%), Gaps = 52/711 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A + ++ L ++I +HD YY +P I D+EYD L R + A PDL + P Sbjct: 9 QTAEQRIADLRRQIRHHDHLYYTKDRPEISDAEYDRLFRELVDLETAHPDLVTGDSPT-- 66 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G L KV+H P LSL+ I + +D+R F R+ R + + + I +T EPK Sbjct: 67 -QRVGAPPLDELTKVSHEKPMLSLDSITDQDDVRAFDARMKR---ELETDQIVYTAEPKF 122 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEVY 192 DG + + Y++G FV A RGDG GEDV+ +R I +P L ++P + VRGEVY Sbjct: 123 DGLSVELVYDRGAFVRGATRGDGMVGEDVTINLRTIRALPLQLDPQPSLPAHLVVRGEVY 182 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + ++F LN M G + +ANPRNAA+G LR+L+ +R L + + S Sbjct: 183 MRLDEFQVLNRRMTERGEEAFANPRNAAAGSLRQLDSRITASRPLTLTCYDIMAISGTAP 242 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++ L + G PV ++ + ++S+ ++R +LP++IDG+V K+D + Sbjct: 243 PTHWDELDALAAWGLPVPEHRQRCRSIDEVLSFQQATDAMRDSLPFEIDGVVVKLDRRTW 302 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q QLG ++RSPRW I++KFA ++ T + DI + +GRTG LTP+A L+PV +GG I+ A Sbjct: 303 QDQLGSKSRSPRWAIAYKFAPRKEITVIQDIAVSVGRTGTLTPLALLKPVEVGGVTISRA 362 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D + +D+RVGD V V+RAG+VIP + + + +PF P Sbjct: 363 TLHNADEV-----------ARKDVRVGDTVKVERAGDVIPAIAERVPVPGETRQEPFVMP 411 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S V R+ A CTG C AQ ++HF S+ A +I+G+GK+ + Sbjct: 412 DHCPVCGSAVARE--------GAYFYCTGQTVCVAQLKGAIEHFASKSALDIDGMGKKTI 463 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +R AD+++L + Q I + GF D S L +SI + +++SL+ Sbjct: 464 AQLVD----VGLVRDLADLYSLTKDQ------ILTLEGFADRSANLLLESIERSKSVSLD 513 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + LGIR VG IAR LAK + + ++ +++ +D L++V +G I+ + Sbjct: 514 RLLMGLGIRQVGQHIARVLAKQFGT-------LSKLMSATQED---LLQVREIGPEISAS 563 Query: 612 IVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F+ RN + L++ ++P + S + K VFTG L+ R +A+E Sbjct: 564 LTSFFSEERNRAVIARLIERGLTIAPPTTENTTG-SQHLAGKTFVFTGGLEGYSRDQAKE 622 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V Q G VS+ +S+K ++ G +PGSKL++AQ+LGV+I+ E +F L++ Sbjct: 623 LVEQQGGQVSSSVSKKASFVVAGTDPGSKLDQAQKLGVRILTEAEFTALVR 673 >gi|28377923|ref|NP_784815.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1] gi|81631729|sp|Q88XQ0|DNLJ_LACPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28270757|emb|CAD63662.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1] Length = 679 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 239/718 (33%), Positives = 389/718 (54%), Gaps = 71/718 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++EQA E ++L Q ++ YY P + DS YD R + FP L P Sbjct: 8 MTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQLVT---P 64 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +GG + KVTH IP LSL +++ +L++F+ R+ ++ + + + E Sbjct: 65 DSPTQLVGGTVKAGFDKVTHEIPMLSLGDVFSQAELQEFVDRL----EQNVGHPVDYNCE 120 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G V + RG+G GED++A I+ I +IP+ L+ P I+VRGE Sbjct: 121 LKIDGLALSLRYEDGVLVQGSTRGNGTVGEDITANIKTIKSIPQRLTR--PLTIDVRGEC 178 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 Y+ K F ALN+ A G +ANPRNAA+G LR+L+ + R L+ F++ + + Sbjct: 179 YMPKAAFAALNERREAAGEPVFANPRNAAAGTLRQLDSRVVAERQLSTFMYNIADYEPLT 238 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A+ Q +ML + LGF +N + A++ + SY + ++ R L Y IDG+V K + Sbjct: 239 ARTQSDMLTEFADLGFAINPDFKVAHSMADVFSYIDHYQNERPELAYGIDGIVIKANPLP 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG + PRW I+ KF + T L D++ +GRTG++TP A +EPV + G + Sbjct: 299 LQRSLGATVKVPRWAIAFKFPPDEQPTLLKDVEWTVGRTGVVTPTAVMEPVQLAGTTVAR 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY+ +D+R+GD VL+ +AG++IP++ + + +R DAQP Sbjct: 359 ASLHNPDYV-----------AAKDVRIGDTVLLHKAGDIIPEISSVDLAKRPKDAQPLVI 407 Query: 431 PSFCPICQSRVV--------RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P+ CP C + +V R +NPK C AQ E L HF SR+A N Sbjct: 408 PTTCPSCGAPLVHLEDEVALRCINPK---------------CPAQVQEGLVHFASRNAMN 452 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLG + + + + R+ +D+ L R + ++ I D S L +I Sbjct: 453 IDGLGPRIIAQLYAN-------RLVSDVAGLYRLTKAQLLTLDKI---KDKSAEKLLTAI 502 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 ++ R+ SLER +F LGIRHVGA++AR +A+++ + I ++A + ++ + + Sbjct: 503 DRSRDNSLERLLFGLGIRHVGAKVARLIAQHFGT-------IEALMAASQEE---IAAID 552 Query: 603 LVGDIIAQAIVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 +GD+IA A+V+++++ R + AV PS E + +S K++V TG Sbjct: 553 SMGDVIANAVVQYFESDEVHTLIRELQAVNVNTTYQGPSATVAEDS-NSWFAGKRVVLTG 611 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 L+ R A +++ GA V +S+KTD++I G + GSKL+KAQQL + + +E +F Sbjct: 612 KLESFTRPDATQWLQAHGATVMGSVSKKTDLVIAGSDAGSKLQKAQQLDITVWDEARF 669 >gi|58426627|gb|AAW75664.1| DNA ligase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 961 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 269/863 (31%), Positives = 427/863 (49%), Gaps = 184/863 (21%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE+AR+ L + I D YY + P I D++YD L R + +P+L ++ P+ Sbjct: 126 IERARE----LRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTADSPS- 180 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GG + S KV HSIP LSL ++ +++ F+ RI+R + N + F++EPK Sbjct: 181 --MRVGGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFR--RMGSSNPLEFSVEPK 236 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++RYE GKFV RGDG GEDVS IR I ++P ++ N+P I+EVRGEVY Sbjct: 237 FDGLAISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEVRGEVY 296 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG------- 244 + ++ F N +A G K ANPRN A+G LR+L+ R L+FF +G+G Sbjct: 297 MPRDGFSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLIQVEQD 356 Query: 245 ---KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + + A ML ++R GFPV++ V G+++YY + R LP+DIDG Sbjct: 357 LFEEIPQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDG 416 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYK+D+ + Q+++G +R+PRW ++HKF ++ ST + I+IQIGRTG TPVARL+PV Sbjct: 417 VVYKLDDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPV 476 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 ++ G ++TNATLHN D I LD +RVGD V+V+RAG+VIP+V ++ ++R Sbjct: 477 HVAGVIVTNATLHNADQIARLD-----------VRVGDTVIVRRAGDVIPEVAAVVADQR 525 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P Q + P+ CP+C S +VR+ A RC+G L C AQ+ E +HFVSR A Sbjct: 526 PPATQSWQMPTQCPVCGSEIVREEGQ------AVWRCSGELTCPAQRKEAFRHFVSRRAM 579 Query: 482 NIE-------------GLGKQQLDFFFKSEDPAFSIRI-----PADIFTLQRRQQTST-- 521 +++ G+ + D + + D +R+ F + R+ ++ Sbjct: 580 DVDGLGEKFIEVLVDSGVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGA 639 Query: 522 -TKIE-NILGFG-DVS--------------------------------VTNLYDSINKRR 546 ++E ++G G D++ NL ++I R Sbjct: 640 YAQLEATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSR 699 Query: 547 NISLERFIFSLGI---------------------RH-----------VGAEIARSLAKYY 574 + +LERF+F+LGI RH +G E+ARSL ++ Sbjct: 700 DTTLERFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFF 759 Query: 575 LSYQNFAQEINNIIAHNN------------------DDWLSLIRVPLVGDI--------- 607 N + I++++A + L + +P V I Sbjct: 760 DQPGN-QKAIDHLLARKVRIGDTHPPSPKLRGELRLANLLEDLEIPKVTPIRAAQIATAF 818 Query: 608 ----------------------IAQAIVEFYQNPRN-ICAVEA-----LLKEVSPSIGRH 639 +A+++ + P N AV+A L + P G Sbjct: 819 GSIDALRNGGPEPLVEAGVPQSVAESLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEE 878 Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 + + ++ + +V TGTL + R A++ + LGA V+ +S+KT ++ G+ GSKL+ Sbjct: 879 K---TGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLD 935 Query: 700 KAQQLGVKIMNEEQFLFLLQQYN 722 KAQ LGV+I +E + L L ++ Sbjct: 936 KAQSLGVEIWDEARLLAFLGEHG 958 >gi|84623945|ref|YP_451317.1| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|123752764|sp|Q2P334|DNLJ_XANOM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|84367885|dbj|BAE69043.1| DNA ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 841 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 270/863 (31%), Positives = 428/863 (49%), Gaps = 184/863 (21%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE+AR+ L + I D YY + P I D++YD L R + +P+L ++ P+ Sbjct: 6 IERARE----LRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTADSPS- 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GG + S KV HSIP LSL ++ +++ F+ RI+R + N + F++EPK Sbjct: 61 --MRVGGAVRKSFVKVRHSIPMLSLANAFDEVEVKNFVDRIFR--RMGSSNPLEFSVEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++RYE GKFV RGDG GEDVS IR I ++P ++ N+P I+EVRGEVY Sbjct: 117 FDGLAISLRYELGKFVQGVTRGDGDVGEDVSENIRTIRSVPLKLKGNNVPAILEVRGEVY 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG------- 244 + ++ F N +A G K ANPRN A+G LR+L+ R L+FF +G+G Sbjct: 177 MPRDGFSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRISAQRPLSFFAYGVGLIQVEQD 236 Query: 245 ---KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + + A ML ++R GFPV++ V G+++YY + R LP+DIDG Sbjct: 237 LFEEIPQSIASTHSAMLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYK+D+ + Q+++G +R+PRW ++HKF ++ ST + I+IQIGRTG TPVARL+PV Sbjct: 297 VVYKLDDLAGQREMGFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPV 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 ++ G ++TNATLHN D I LD +RVGD V+V+RAG+VIP+V ++ ++R Sbjct: 357 HVAGVIVTNATLHNADQIARLD-----------VRVGDTVIVRRAGDVIPEVAAVVADQR 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P Q + P+ CP+C S +VR+ G+ A RC+G L C AQ+ E +HFVSR A Sbjct: 406 PPATQSWQMPTQCPVCGSEIVRE----EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAM 459 Query: 482 NIE-------------GLGKQQLDFFFKSEDPAFSIRI-----PADIFTLQRRQQTST-- 521 +++ G+ + D + + D +R+ F + R+ ++ Sbjct: 460 DVDGLGEKFIEVLVDSGVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGA 519 Query: 522 -TKIE-NILGFG-DVS--------------------------------VTNLYDSINKRR 546 ++E ++G G D++ NL ++I R Sbjct: 520 YAQLEATLVGIGVDLAGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSR 579 Query: 547 NISLERFIFSLGI---------------------RH-----------VGAEIARSLAKYY 574 + +LERF+F+LGI RH +G E+ARSL ++ Sbjct: 580 DTTLERFLFALGIEHVGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFF 639 Query: 575 LSYQNFAQEINNIIAHNN------------------DDWLSLIRVPLVGDI--------- 607 N + I++++A + L + +P V I Sbjct: 640 DQPGN-QKAIDHLLARKVRIGDTHPPSPKLRGELRLANLLEDLEIPKVTPIRAAQIATAF 698 Query: 608 ----------------------IAQAIVEFYQNPRN-ICAVEA-----LLKEVSPSIGRH 639 +A+++ + P N AV A L + P G Sbjct: 699 GSIDALRNGGPEPLVEAGVPQSVAESLATWLLVPANDTLAVNAQKKLSALLAMMPEAGEE 758 Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 + + ++ + +V TGTL + R A++ + LGA V+ +S+KT ++ G+ GSKL+ Sbjct: 759 K---TGPLDGQTVVITGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLD 815 Query: 700 KAQQLGVKIMNEEQFLFLLQQYN 722 KAQ LGV+I +E + L L ++ Sbjct: 816 KAQSLGVEIWDEARLLAFLGEHG 838 >gi|21242377|ref|NP_641959.1| NAD-dependent DNA ligase LigA [Xanthomonas axonopodis pv. citri str. 306] gi|81803317|sp|Q8PM07|DNLJ_XANAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21107814|gb|AAM36495.1| DNA ligase [Xanthomonas axonopodis pv. citri str. 306] Length = 833 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 266/836 (31%), Positives = 424/836 (50%), Gaps = 169/836 (20%) Query: 32 DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 +D Y+Y +P + D++YD L R +A+ A P+LA ++ P ++G + Sbjct: 19 EDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPT---QRVGHLAASRFAE 75 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H++P LSL ++ E++ +F+ RI ++ + F+ EPK+DG I++RYE G+F Sbjct: 76 VRHAMPMLSLGNAFSDEEVTEFVRRIS---ERLEVRQPLFSAEPKLDGLAISLRYENGEF 132 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RGDG +GEDVSA +R + IP R+ P ++EVRGEVY+ + F A N +M A Sbjct: 133 VQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPRVLEVRGEVYMPRAAFEAYNAQMRA 192 Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265 G K ANPRN A+G LR+L+ R L+FF +G+G+ SE + +L ++R G Sbjct: 193 QGGKILANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQAHSAILAQLRAWG 252 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 FPV+ V G+++YY + R L +DIDG+VYK+D+ + Q+++G +R+PRW Sbjct: 253 FPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLDDLAGQREMGFVSRAPRWA 312 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN D I LD Sbjct: 313 IAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-- 370 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +RVGD V+V+RAG+VIP+V ++ ++R P Q + P+ CP+C S +VR+ Sbjct: 371 ---------VRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVRE- 420 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL-------------D 492 G+ A RC+G L C AQ+ E +HFVSR A +++GLG++ + D Sbjct: 421 ---EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVAD 475 Query: 493 FFFKSEDPAFSIRI--PAD---IFTLQRRQQTST---TKIE-NILGFG-------DVSVT 536 + S D +R+ AD F + R+ ++ ++E +++G G DV T Sbjct: 476 LYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYAQLEASVVGIGVDLAGERDVPQT 535 Query: 537 --------------------------NLYDSINKRRNISLERFIFSLGIRH--------- 561 NL ++I R+ +LERF+F+LGI H Sbjct: 536 WQADLLRAGLPSFDWNRKKIATKWAENLIEAIEISRDTTLERFLFALGIEHVGESTAKAL 595 Query: 562 -----------------------VGAEIARSLAKYYLSYQNFAQEINNIIAH-------- 590 +G E+ARSL ++ N + I++++A Sbjct: 596 SAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGN-QKAIDHLLARKVRIGDTH 654 Query: 591 ----------NNDDWLSLIRVPLVGDI-------------------------------IA 609 + + L + +P V I +A Sbjct: 655 PPSPKLRGELSLANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLVEAGVPQSVA 714 Query: 610 QAIVEFYQNPRN-ICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +++ + P N AV A L E+ + + + ++ + +V TGTL + R A Sbjct: 715 ESLAAWLLVPANDTLAVNAQRKLSELLAMLPEAGEEKTGPLDGQTVVITGTLAALTRDAA 774 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L L + Sbjct: 775 KQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGDHG 830 >gi|227530245|ref|ZP_03960294.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540] gi|227349834|gb|EEJ40125.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540] Length = 680 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 246/719 (34%), Positives = 404/719 (56%), Gaps = 59/719 (8%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 Q IP+ L+++QA++E+ L ++I+ YY+ P + D YD +R I FP+ Sbjct: 4 QSIPVAQLTLDQAKEEIGPLRKQIAQWGKEYYEQDSPTVEDYVYDRQYQRLVQIEQRFPE 63 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-D 123 L + P+ P ++GGE L KV H IP LS+ +++IE+L F +R + +D D Sbjct: 64 L---QTPDSPTQQVGGEAESQLTKVRHEIPMLSMGDVFSIEELMDFN---HRQQENRDVD 117 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + LE KIDG +++ YE GK + + RG+G+ GEDV+ +R I ++P+ L P Sbjct: 118 VEAEYNLELKIDGLSLSLVYENGKLIQGSTRGNGNIGEDVTENVRTIKSVPQ--ELPEPL 175 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242 +E RGE Y+ K F LN + G+ +ANPRNAA+G LR+L+P R L+ F++ Sbjct: 176 SVEFRGECYMPKESFAKLNAQREDDGQPIFANPRNAAAGSLRQLDPKVTAKRDLDTFMYY 235 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + ++ Q E L +MR LGF VN R + I Y NE + R L Y IDG+ Sbjct: 236 VPEYQKLGVTTQAEALDRMRELGFKVNPHNRVVHNRQEIEDYINEYTAKRDQLAYGIDGI 295 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KV++ ++ LG + PRW I++KF ++ T + DI+ +GRTG +TP A ++PV Sbjct: 296 VEKVNDLETEEALGNTVKVPRWEIAYKFPPEEQPTIIRDIEWTVGRTGNVTPTAVMDPVQ 355 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ A+LHN DY+K +D+R+GD V + +AG++IP++ + +++R Sbjct: 356 LAGTTVSRASLHNPDYLK-----------EKDVRLGDTVYLHKAGDIIPEISKVNLSKRP 404 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D++P+ P+ CP C S +V L+ + A RC + C AQ E L HF SR+A + Sbjct: 405 ADSEPYQIPTKCPACDSELVH-LDDE-----VALRCINPM-CPAQIKEGLAHFASRNAMD 457 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I GLG + ++ + + I A ++ L Q + K FG+ S TNL SI Sbjct: 458 IAGLGPKIIEQLWNKK----LIHDVAGLYALTEDQLLTLDK------FGEKSATNLLTSI 507 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 N RN S+ER +F LGIRHVGA+ AR + ++ +++ ++ + D+ + V Sbjct: 508 NNSRNNSVERLLFGLGIRHVGAKAARLIMAHF-------NDLDQLMGASADE---ISAVD 557 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEK-NVSSEIENKKLVFT 655 +G I +++ ++ N + V++L++E+ S +G + SS+ K++V T Sbjct: 558 GIGPTIGESVETYFANEQ----VQSLIEELRQSGLNFTYLGSTTTVDESSDWNGKRVVLT 613 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 G L ++ R +A++++ GA V+ +S+KTDI+I G+ GSKL KAQ+LGV + +E++F Sbjct: 614 GKLVEMTRTEAKDWLEVHGAKVTGSVSKKTDIVIAGEKAGSKLTKAQELGVDVWDEQRF 672 >gi|292657108|ref|YP_003537005.1| DNA ligase, NAD-dependent [Haloferax volcanii DS2] gi|291370943|gb|ADE03170.1| DNA ligase, NAD-dependent [Haloferax volcanii DS2] Length = 699 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 250/716 (34%), Positives = 386/716 (53%), Gaps = 50/716 (6%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P E+LS E A + + L + + HD YY + P++ D+ YDAL R A+ AF DL Sbjct: 23 PAESLSREAAEGQAALLREAVREHDHRYYVAADPLVSDAAYDALFSRLVALEDAF-DLDT 81 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + N P N++GGE +L V H P LS+++ + +DLR+F R+ +++ ++ Sbjct: 82 T---NSPTNRVGGEPIDALETVEHVAPMLSIDQSTDADDLREFDERV-----RREVGAVD 133 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + EPK DG + + YE G+FV AA RGDG G+DVSA ++ IPT+P L + P+ + V Sbjct: 134 YVCEPKFDGLSVEVVYEDGEFVRAATRGDGRRGDDVSAQVKTIPTVPLSLRGDHPDRLAV 193 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 RGE+Y+ K+DF LN + G +ANPRNAA+G LR L+P+ + R L F + + Sbjct: 194 RGEIYMPKSDFSDLNARRVEAGEDAFANPRNAAAGTLRNLDPSVVADRPLAVFFYDILDA 253 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S Q+ L ++R G V + + +A + Y + M++ R L Y+IDG V KV Sbjct: 254 S-ARPDSQWAALDRLREWGLRVTDRIERAEDVAEAIDYRDRMQAARDDLDYEIDGTVIKV 312 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D +++LGE++RS RW ++KF + T + DI +Q+GRTG LTPVA L+PV++GG Sbjct: 313 DSRDARERLGEKSRSVRWAFAYKFPARHEVTTVRDIVVQVGRTGRLTPVAILDPVDVGGV 372 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATLHN D R + VGDRV VKRAG+VIP+VV++ + Sbjct: 373 TVSRATLHNPDE-----------RAALGVAVGDRVRVKRAGDVIPQVVEVTED----GGG 417 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + FP CP+C S V RD G L C+GGL+C AQ+ + HF + A +I+GL Sbjct: 418 CYEFPDECPVCGSAVDRD-----GPLAF---CSGGLSCPAQREASIGHFAVKGAMDIDGL 469 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++++ A + AD++ L + + + G+G+ S NL ++ + Sbjct: 470 GEERVAQLVD----AGLVETVADLYDL------TADDLAELEGWGETSAENLVAAVENAK 519 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + SL+ F+ L I VG AR LA+ + S + F E + + L VP VG+ Sbjct: 520 HPSLDSFLVGLSIPEVGEATARGLAREFGSIEAFPIEADAEEDEFDAFEERLTTVPDVGE 579 Query: 607 IIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A+ + +F++N N + ALL + V P ++ E++ V TGTL R Sbjct: 580 TVARRVRDFFENADNRAVIRALLDRGVDPE---PVESGGDELDGLTFVVTGTLAA-SRSD 635 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 E V G V+ +S TD ++VG+NPG SK + A+ V + E +F LL + Sbjct: 636 VTELVESHGGNVTGSVSGNTDYLVVGENPGRSKRDDAEANDVPTLAETEFEALLAE 691 >gi|332653279|ref|ZP_08419024.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16] gi|332518425|gb|EGJ48028.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16] Length = 657 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 247/704 (35%), Positives = 387/704 (54%), Gaps = 54/704 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E+ L +E++ + YY P + D +YD RR + + A P+L P+ P ++ Sbjct: 5 QEILELRKELNQANFEYYVKDDPTMSDYDYDHKLRRLEELEGAHPELIT---PDSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG+ S +VTH +P SL+ +++ ++LR F R+ K + +++EPK+DG Sbjct: 62 GGKALESFQQVTHRVPLESLQDVFDFDELRAFDQRVRGVEPK-----VSYSVEPKVDGLS 116 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKND 197 + + Y+ G+FV A RGDG GEDV+ ++ + +IP LS+ ++P + VRGEVY+ K Sbjct: 117 VALEYQDGQFVRGATRGDGLVGEDVTENLKTVKSIP--LSIPDVPGTLIVRGEVYMPKKV 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F ALN+E G +ANPRNAA+G LR+L+P R L+ V + E Sbjct: 175 FHALNEEREKRGEALFANPRNAAAGSLRQLDPKIAAQRRLDIAVFNIQWAENEDFHSHTE 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + + GF V V +T V + R P+DIDG V KVD+ + ++ LG Sbjct: 235 GINYLADKGFKVIPHV-ICSTIEEAVEQVKAIGEGRENYPFDIDGAVIKVDDLAQRQTLG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ PRW ++K+ + +RL DI IQ+GRTG+LTP A LEPV + G +TNATLHN+ Sbjct: 294 STAKFPRWAAAYKYPPEVKPSRLTDIVIQVGRTGVLTPKAVLEPVRLAGTTVTNATLHNQ 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD VLV++AGE+IP+V+ +++ +R DA P+ FP CP Sbjct: 354 DFIT-----------EKDIRIGDTVLVRKAGEIIPEVLSVVMEKRPVDAVPYRFPDVCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + V RD + AH RCTG C AQ L L HF SRDA +IEGLG ++ Sbjct: 403 CGAPVARDED-------GAHIRCTGA-ECPAQLLRNLAHFASRDAMDIEGLGIAVVENLV 454 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 K A ++ P D++ L + ++E + G S NL +I K ++ L R +F Sbjct: 455 K----AGLVKTPGDLYFL---HEEDVAELERM---GKKSAQNLLSAIEKSKSQDLSRLLF 504 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 + GIR VG + + LA+ + S ++N+ A ++ L +V +G I AQ+IV++ Sbjct: 505 AFGIRQVGQKAGKILAQRFGS-------LDNLQAATVEE---LTQVDDIGAITAQSIVDW 554 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + +P++ + A LKE ++ +K K V TGTL + R +A + + G Sbjct: 555 FASPQSQHLI-ARLKEAGVNMQAEQKGEDQRFAGKTFVLTGTLDRFTRAEATKMIEDRGG 613 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +S+KT ++ G+ GSKL KAQ+LGV ++ +E+FL L++ Sbjct: 614 KAAGSVSKKTTYVVAGEAAGSKLRKAQELGVPVLTQEEFLALME 657 >gi|9107768|gb|AAF85353.1|AE004063_2 DNA ligase [Xylella fastidiosa 9a5c] Length = 837 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 247/688 (35%), Positives = 369/688 (53%), Gaps = 107/688 (15%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +IP++ Q EL QE +YH Y+ +P I D++YD + R DA+ A+PDL Sbjct: 7 MIPLDP---AQRAAELRCRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEAAYPDL 60 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 A P+ P ++G + + +V H++P LSL ++ ++ +F+ RI + + Sbjct: 61 A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITAC---LGETA 114 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184 F+ EPK+DG I++RY+ G F+ A RGDG +GEDV+A +R +PTIP R+ S P + Sbjct: 115 PGFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 174 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 +EVRGEVY+ + DF A N + G K ANPRN A+G LR+L+P R L+F+ +G+ Sbjct: 175 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 234 Query: 244 GK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ T ++ E+L +R GFPV+ V +++YY M++IR TLP+DIDG+ Sbjct: 235 GEVTDDVSFHRHSEILASLRAWGFPVSPLVELVYGSEELLNYYRRMETIRDTLPFDIDGI 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYK+D+ S Q+++G AR+PRW I+HKF ++ +T + I+IQIGRTG TPVARL PV Sbjct: 295 VYKLDDLSGQREMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G +T+ATLHN D I L D+R+GD V+V+RAG+VIP+VV +I + R Sbjct: 355 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVTVITDSRP 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 A +S P CP+C S +VR+ TG A RC+G LAC AQ+ E ++HFVSR A + Sbjct: 404 LGATAWSMPMACPVCGSEIVRE----TG--AAVWRCSGELACPAQRKEAIRHFVSRRAMD 457 Query: 483 IEGLGKQQLDFFF--------------------------KSEDPAFSIRIPADIFTLQRR 516 +EGLG + ++ ++ P +R D T R Sbjct: 458 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 517 Query: 517 QQTSTTKIENIL--------GFGDVS--------------------------VTNLYDSI 542 QQ +E IL G GDV NL +I Sbjct: 518 QQ-----LEEILRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAI 572 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 ++ R +LERF+F+LG+ HVG A++LA + ++ W VP Sbjct: 573 DRSRQTTLERFLFALGMTHVGETTAKALAHSF----------GDLAIIRQLPWPLFKCVP 622 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK 630 +G +A+AI F P N A++ L++ Sbjct: 623 DIGGEVARAIGHFMDQPANQQAIDDLVE 650 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 11/121 (9%) Query: 609 AQAIVEFYQNPRNIC-------AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 AQ++ E++Q+P NI + LL ++ PS R ++ + + +V TG L + Sbjct: 719 AQSLTEWFQSPDNISLARRLQHCCDVLLAQL-PSADRAH---TAPLNGQSVVLTGKLASL 774 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R A + LGA + +S+KT ++ G++PGSKL+KA L V I +E + L L QY Sbjct: 775 TREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHALHVDIWDEARLLAFLGQY 834 Query: 722 N 722 + Sbjct: 835 S 835 >gi|146296740|ref|YP_001180511.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166215569|sp|A4XK85|DNLJ_CALS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145410316|gb|ABP67320.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 673 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 247/699 (35%), Positives = 393/699 (56%), Gaps = 51/699 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L I+YHD YY P I D EYD L R + +P+ P+ P + Sbjct: 6 KKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYIF---PDSPTQR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ +V H +P LSL +++ +L F R+ D N + +E KIDG Sbjct: 63 VGGKVKEGFKEVVHRVPLLSLSNVFSEGELYDFDRRLRELLGTDDFN---YVVEYKIDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ K++ Sbjct: 120 SVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLKLKDDIN--IVVRGEVFMPKDE 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F+ LN E +ANPRNAA+G LR+L+P R L+ FV + + E K E Sbjct: 178 FIKLNQEREENEEPLFANPRNAAAGSLRQLDPRITAQRKLDIFVFNV-QWCEKELKTHDE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ LGF V+ + +++ R LP++IDG V K+++ +L+ G Sbjct: 237 ALRYLKYLGFKVSPDYVVCSNIKEAYEAIKKVEEKRGLLPFEIDGAVVKLNQLALRDVAG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW +++KF ++ T+L+DI++ +GRTGILTP A LEPV I G++++ ATLHN Sbjct: 297 STAKSPRWAVAYKFPPEKKETKLIDIEVNVGRTGILTPTAVLEPVRISGSVVSRATLHNM 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DIR+GD V+V++A E+IP+VV+++ ++R + + F P CP+ Sbjct: 357 DYIR-----------QKDIRIGDTVVVQKAAEIIPEVVEVVFSKRTGNERIFEMPKKCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V++ + A+RCT G+ C A+ + HFVSRDA +I G+G+ + F+ Sbjct: 406 CGADVIKFEDE------VAYRCT-GVECPAKSYRLILHFVSRDAMDIAGMGEMIVKNLFE 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ PADI+ L+ + N+ FG S NL +I + L+R IF+ Sbjct: 459 RG----LIKTPADIYDLK------FDDLVNLERFGVKSTNNLLKAIEASKKRPLDRLIFA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G + A++LA++ S I+++ ++ L+++P G+ +A+++V F+ Sbjct: 509 LGIRHIGQKAAKTLAEHISS-------IDDLFTITEEE---LLKLPDFGEKMAKSVVTFF 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + + +E L K ++ EK S+I + V TG L K R +A+E + LGA Sbjct: 559 RQDQTKHLIERLKKAGVNTVA--EKKAKSDILKGYTFVLTGALSKYSRSQAKEILESLGA 616 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 VS +S+KT +IVG++PGSKL KAQ+L VKI+ E+ F Sbjct: 617 RVSESVSKKTTAVIVGEDPGSKLTKAQELNVKILYEQDF 655 >gi|77747612|ref|NP_299833.2| NAD-dependent DNA ligase LigA [Xylella fastidiosa 9a5c] gi|166216281|sp|Q9PAG2|DNLJ_XYLFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 831 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 247/688 (35%), Positives = 369/688 (53%), Gaps = 107/688 (15%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +IP++ Q EL QE +YH Y+ +P I D++YD + R DA+ A+PDL Sbjct: 1 MIPLDP---AQRAAELRCRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEAAYPDL 54 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 A P+ P ++G + + +V H++P LSL ++ ++ +F+ RI + + Sbjct: 55 A---TPDSPTQRVGHTIATAFSEVRHTVPMLSLNNAFSDPEVLEFVRRITAC---LGETA 108 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184 F+ EPK+DG I++RY+ G F+ A RGDG +GEDV+A +R +PTIP R+ S P + Sbjct: 109 PGFSAEPKLDGLAISLRYQNGIFIQGATRGDGVTGEDVTANLRTLPTIPQRLQSDTWPTV 168 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 +EVRGEVY+ + DF A N + G K ANPRN A+G LR+L+P R L+F+ +G+ Sbjct: 169 LEVRGEVYMPRPDFEAYNTQARLRGWKVLANPRNGAAGSLRQLDPHITAQRPLSFYAYGI 228 Query: 244 GK-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ T ++ E+L +R GFPV+ V +++YY M++IR TLP+DIDG+ Sbjct: 229 GEVTDDVSFHRHSEILASLRAWGFPVSPLVELVYGSEELLNYYRRMETIRDTLPFDIDGI 288 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYK+D+ S Q+++G AR+PRW I+HKF ++ +T + I+IQIGRTG TPVARL PV Sbjct: 289 VYKLDDLSGQREMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLTPVQ 348 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G +T+ATLHN D I L D+R+GD V+V+RAG+VIP+VV +I + R Sbjct: 349 VAGVTVTSATLHNADQIARL-----------DVRIGDTVIVRRAGDVIPEVVTVITDSRP 397 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 A +S P CP+C S +VR+ TG A RC+G LAC AQ+ E ++HFVSR A + Sbjct: 398 LGATAWSMPMACPVCGSEIVRE----TG--AAVWRCSGELACPAQRKEAIRHFVSRRAMD 451 Query: 483 IEGLGKQQLDFFF--------------------------KSEDPAFSIRIPADIFTLQRR 516 +EGLG + ++ ++ P +R D T R Sbjct: 452 VEGLGVKCIELLVDAAVVHGVADLYHLSLDQLLRLRLVTNAQTPTMLLREARDHVTGMRY 511 Query: 517 QQTSTTKIENIL--------GFGDVS--------------------------VTNLYDSI 542 QQ +E IL G GDV NL +I Sbjct: 512 QQ-----LEEILRTVGVDLSGEGDVPKHWQIDVLRAQWPDFDWNHKKIATKWAQNLIAAI 566 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 ++ R +LERF+F+LG+ HVG A++LA + ++ W VP Sbjct: 567 DRSRQTTLERFLFALGMTHVGETTAKALAHSF----------GDLAIIRQLPWPLFKCVP 616 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLK 630 +G +A+AI F P N A++ L++ Sbjct: 617 DIGGEVARAIGHFMDQPANQQAIDDLVE 644 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 11/121 (9%) Query: 609 AQAIVEFYQNPRNIC-------AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 AQ++ E++Q+P NI + LL ++ PS R ++ + + +V TG L + Sbjct: 713 AQSLTEWFQSPDNISLARRLQHCCDVLLAQL-PSADRAH---TAPLNGQSVVLTGKLASL 768 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R A + LGA + +S+KT ++ G++PGSKL+KA L V I +E + L L QY Sbjct: 769 TREAAATRLEMLGAKIVGSVSKKTSFLVAGEDPGSKLDKAHALHVDIWDEARLLAFLGQY 828 Query: 722 N 722 + Sbjct: 829 S 829 >gi|157691416|ref|YP_001485878.1| NAD-dependent DNA ligase LigA [Bacillus pumilus SAFR-032] gi|190359234|sp|A8FAQ1|DNLJ_BACP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157680174|gb|ABV61318.1| DNA ligase (NAD(+)) [Bacillus pumilus SAFR-032] Length = 668 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 243/714 (34%), Positives = 403/714 (56%), Gaps = 57/714 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A++ + L + ++ ++ Y+ +P + D+EYDA R ++ PDL ++ P+ Sbjct: 4 EAAKRRIEELHEILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAADSPS-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + + KV H P LSL +N +DL F R+ ++ + I + +E KI Sbjct: 62 -QRVGGAVLDAFQKVRHGTPMLSLGNAFNEQDLLDFDRRV----RQAVGDDIAYNVELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I +IP L + P IEVRGE ++ Sbjct: 117 DGLAVSLRYENGVFVRGATRGDGTTGEDITENLKTIRSIP--LKIKRPLSIEVRGEAFMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252 K F ALN++ + +P+ANPRNAA+G LR+L+ T I R L+ FV+ + + EI + Sbjct: 175 KPSFEALNEKRLQNEEEPFANPRNAAAGSLRQLD-TKIAAKRNLDIFVYSIAELDEIGVE 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L + LGF N R T ++ +K+ R+ Y+IDG+V KVD + Q Sbjct: 234 SQSEGLDLLDELGFKTNKERRTCQTIEEVIELIETLKTKRADFSYEIDGIVIKVDSLAQQ 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG A+SPRW +++KF ++ T+LLDI++ +GRTG++TP A LEPV + G + A+ Sbjct: 294 EELGFTAKSPRWAVAYKFPAEEVVTKLLDIELSVGRTGVITPTAILEPVKVAGTTVQRAS 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED IK +DIR+ D+V+VK+AG++IP+V +++++R + +PF P+ Sbjct: 354 LHNEDLIK-----------EKDIRLLDQVIVKKAGDIIPEVAGVLIDQRTGEEKPFHMPT 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S +VR G++ A RC C AQ E L HFVSR+A NI+GLG++ + Sbjct: 403 ECPECHSELVR----IEGEV--ALRCINP-ECPAQIREGLIHFVSRNAMNIDGLGERVIT 455 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FK + R+ +D++ L + + ++ G+ SV NL SI + + SLER Sbjct: 456 QLFKEQ---LVSRV-SDLYRLTKEELIQLERM------GEKSVENLLRSIEQSKENSLER 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIR +G++ A++LA ++ Q L+ V +G+ +A A+ Sbjct: 506 LLFGLGIRFIGSKAAKTLALHFGDIDQLKQATKE----------QLLEVDEIGEKMADAV 555 Query: 613 VEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 V +++ + + L + P + E++ S K +V TG L+++ R+ A Sbjct: 556 VTYFEKEEILNLLNELKELGVNMTYTGPKPVKVEES-DSYFAGKTIVLTGKLEEMARNDA 614 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LG ++ +S+KTD++I G+ GSKL KA++L ++I +E + L L++ Sbjct: 615 KAAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDEVKMLEELKK 668 >gi|313623350|gb|EFR93577.1| DNA ligase, NAD-dependent [Listeria innocua FSL J1-023] Length = 671 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 255/711 (35%), Positives = 380/711 (53%), Gaps = 66/711 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL ++ + SY YY P + D+EYD + I A P+ P P ++ Sbjct: 8 EELINILDQYSYD---YYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVT---PESPSKRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ KV H P LSL +N +DL F RI + K + I + E KIDG Sbjct: 62 GGEVLEGFKKVEHDTPMLSLANAFNRDDLADFDRRI----RDKVGDDISYMCELKIDGLA 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 ++++YE GK+ A RGDG GED++A +R I +IP + L IEVRGE ++ K F Sbjct: 118 VSLQYENGKYKQGATRGDGTVGEDITANLRTIRSIP--MKLKKAYSIEVRGEAFMPKRSF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYE 256 LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ + Sbjct: 176 QKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSA 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LG VN R + + +Y +E R+ L YDIDG+V K++ Q+Q+G Sbjct: 235 GLDMLETLGLKVNKERRLCSNLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNE Sbjct: 295 TTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP Sbjct: 355 DLIT-----------EKDIRIGDTVLIKKAGDIIPEVIKSITEERTGSEKPFHMPKNCPT 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR L + A RC C AQ E L HFVSR+A NI+GLG++ + F Sbjct: 404 CDSELVR-LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD+F L S K+ + G+ SVTNL SI + SLE+ +F Sbjct: 457 ----MHLIKDVADLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVGA+ A+SLA ++ + N + ND +G+ +A + ++ Sbjct: 507 LGIRHVGAKAAKSLAVHFETMDNLKIADKETLTSIND----------IGEKMADSXXTYF 556 Query: 617 QNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQ 667 N V LL+E+ + G +N+S E K +V TG L+K+ R+ A+ Sbjct: 557 ANEE----VHDLLEELKRAGVNMTYTGPKLENMSEEELVFAGKTVVLTGKLEKLTRNDAK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + L Sbjct: 613 ALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYL 663 >gi|327475235|gb|AEA77212.1| DNA ligase [Exiguobacterium sp. EPVM] Length = 664 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 252/705 (35%), Positives = 399/705 (56%), Gaps = 53/705 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + ++ Q+++ + YY +P + D+EYD L I +P+L RS P+ P ++GG Sbjct: 7 VEAIRQKLNQYGYEYYVLDRPSVPDAEYDRLMNELIEIETDYPEL-RS--PDSPTQRVGG 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + KVTH P LSL +++ E+L +++ RI +K S F E K DG ++ Sbjct: 64 APLDAFVKVTHDTPMLSLGNVFSKEELVEWVDRI----EKDLGYSPLFVAELKFDGLAVS 119 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 ++YE G+FV A RGDG +GED++ +R I +IP L LN EVRGE Y+ K F Sbjct: 120 LKYEDGRFVRGATRGDGTTGEDITQNLRTIRSIP--LRLNEDVTFEVRGEAYMPKRSFEH 177 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 LNDE +G +ANPRNAA+G LR+L+ +R L FF +GL T ++ A E L+ Sbjct: 178 LNDERERLGEPLFANPRNAAAGSLRQLDSKIAASRNLAFFAYGLVSTDDLVAS-HDESLE 236 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 +R LG V+ A+T + Y + RS LPY+IDG+V KV + Q+QLG A Sbjct: 237 YLRHLGIAVSQEYTTAHTAEELWGYIETYVTKRSELPYEIDGIVIKVAGYEEQEQLGFTA 296 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 +SPRW +++KF ++ T + D+D +GRTG +TP AR PV++ G+ +T ATLHNED+I Sbjct: 297 KSPRWAVAYKFPAEEVVTTIEDVDFSVGRTGKVTPRARFAPVSVAGSTVTYATLHNEDFI 356 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 +D+ +GDRV++K+AG+VIP VV +V+ER + FP+ CP C+S Sbjct: 357 L-----------EKDLHIGDRVVIKKAGDVIPAVVSALVSERTGEETEIVFPTHCPACES 405 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 +VR G+ A HRC C AQ LE L HFVSR A NI+GLG++ + S+ Sbjct: 406 ELVR----LEGE--ADHRCVNP-ECPAQLLEGLIHFVSRPAMNIDGLGEKVITQLHASD- 457 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 + AD++ L R + ++ G+ SVTNL +I++ + SLER +F+LGI Sbjct: 458 ---LVHNVADLYRLDRDALLALDRM------GETSVTNLLAAIDQSKQNSLERVLFALGI 508 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 R VG + A +A+ + + + ++ + D+ L + +G +A++I +++ P Sbjct: 509 RLVGQKAAVLIAERF-------ETMEAVMEASIDE---LTSIDGIGTKMAESISLYFEKP 558 Query: 620 RNICAVEALLKE-VSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V L + V+ + +++V ++ + K +V TG L ++ R +A + + LGA Sbjct: 559 EARDLVRELGEAGVNLTFKGAKRSVDTDAPLAGKTVVLTGKLHEMTRGEAGKKLELLGAS 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL-FLLQQ 720 V+ +S+ TD+++ G+ GSKL KA+ LG+++ +E L FL +Q Sbjct: 619 VTGSVSKNTDLLVAGEKAGSKLTKAESLGIEVWDEAALLAFLAEQ 663 >gi|227512904|ref|ZP_03942953.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577] gi|227083904|gb|EEI19216.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577] Length = 675 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 249/717 (34%), Positives = 386/717 (53%), Gaps = 59/717 (8%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + E ++ +QA L ++++ D YY Y P + DS YD ++ + FP + Sbjct: 1 MAFEDMTEQQAESAARELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV 60 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P K+G KV H IP LSL +++IE+L+ F R+ D S+ Sbjct: 61 T---PDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADRL------SDSESV 111 Query: 127 FF--TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 F E KIDG I++RYE G V A RG+G GED++ ++ I +IP+ LS P Sbjct: 112 PFEYNCELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIPQRLSR--PIN 169 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 IEVRGE Y+ K F+ LN + G P+ANPRNAA+G LR+L+ R L+ F++ + Sbjct: 170 IEVRGECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNV 229 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 ++ + Q ML++++ LGF +N+ + A+ I Y R TL Y IDG+V Sbjct: 230 ANYDDLESDTQSGMLEELKKLGFTINSDYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIV 289 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ LQ+ LG + PRW I++KF ++A T + DI+ +GRTG++TP A ++ V + Sbjct: 290 IKVNSLPLQRSLGATVKVPRWAIAYKFPPEEAETTVRDIEWTVGRTGVVTPTAVMDEVTL 349 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ A+LHN DY++ +DIR+GD V + +AG++IP++ + ++R Sbjct: 350 AGTTVSRASLHNPDYLQ-----------EKDIRIGDTVRLHKAGDIIPEISTYVKDKRQV 398 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D+QP+ P+ CP C S +V L+ + A RC C AQ E L HF SRDA NI Sbjct: 399 DSQPYEIPTECPSCGSELVH-LDEE-----VALRCINP-QCPAQLKEGLTHFASRDAMNI 451 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG + + FK + A ++ L Q + K FG+ S NL +I+ Sbjct: 452 DGLGPKIIGQLFKKH----MLTDVAGLYGLTFDQLMTLDK------FGEKSAGNLLTAID 501 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 RN S ER +F LGIRHVGA+ AR +A+ + + IA + Sbjct: 502 NSRNNSCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDATAQEIAE----------IDT 551 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHE---KNVSSEIENKKLVFTGT 657 +G IIA ++V ++ P++ + + LK+V + +G + K S K+LV TG Sbjct: 552 MGMIIADSVVTYFSMPQSKELI-SQLKQVGVNMDYLGATDEALKESDSVFNGKRLVLTGK 610 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LQ I R +A ++ GA VS +S+KTDI++VG++PGSK +KA+ LG+ + +E +F Sbjct: 611 LQHITRPEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIDVWDENRF 667 >gi|294626370|ref|ZP_06704972.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599371|gb|EFF43506.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 833 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 263/836 (31%), Positives = 422/836 (50%), Gaps = 169/836 (20%) Query: 32 DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 +D Y+Y +P + D++YD L R +A+ A P+LA ++ P ++G + Sbjct: 19 EDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPT---QRVGHLAASRFAE 75 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H++P LSL ++ E++ +F+ RI ++ + F+ EPK+DG I++RYE G+F Sbjct: 76 VRHALPMLSLGNAFSDEEVAEFVRRIG---ERLEVKQPLFSAEPKLDGLAISLRYENGEF 132 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RGDG +GEDVSA +R + IP R+ P+++EVRGEVY+ + F A N +M A Sbjct: 133 VQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRAAFEAYNAQMRA 192 Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265 G K ANPRN A+G LR+L+ R L+FF +G+G+ SE + +L ++R G Sbjct: 193 QGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQTHSAILAQLRAWG 252 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 FPV+ V G+++YY + R L +DIDG+VYK+D+ + Q+++G +R+PRW Sbjct: 253 FPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLDDLAGQREMGFVSRAPRWA 312 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN D I LD Sbjct: 313 IAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-- 370 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +RVGD V+V+RAG+VIP+V ++ ++R P Q + P+ CP+C S +VR+ Sbjct: 371 ---------VRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVRE- 420 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL-------------D 492 G+ A RC+G L C AQ+ E +HFVSR A +++GLG++ + D Sbjct: 421 ---EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVAD 475 Query: 493 FFFKSEDPAFSIRI--PAD---IFTLQRRQQTST---TKIE-NILGFG-------DVSVT 536 + S D +R+ AD F + R+ ++ ++E +++G G DV T Sbjct: 476 LYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYAQLEASVVGIGVDLAGERDVPQT 535 Query: 537 --------------------------NLYDSINKRRNISLERFIFSLGI----------- 559 NL ++I R+ +LERF+F+LGI Sbjct: 536 WQADLLRAGLPSFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKAL 595 Query: 560 ----------RH-----------VGAEIARSLAKYY------------------------ 574 RH +G E+ARSL ++ Sbjct: 596 SAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDTHP 655 Query: 575 --------LSY-----------------QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LS+ Q A +++ A +L + + ++A Sbjct: 656 PSPKLREALSFASVLDDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVVA 715 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++++ P N A + + + R + + ++ + +V TGTL + R A Sbjct: 716 -TLLQWLDRPENAALASAAQQAMETVLARLPEADALQTGPLDGQTVVITGTLAALTRDAA 774 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L L + Sbjct: 775 KQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLVFLGDHG 830 >gi|294665962|ref|ZP_06731226.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604265|gb|EFF47652.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 833 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 263/836 (31%), Positives = 422/836 (50%), Gaps = 169/836 (20%) Query: 32 DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 +D Y+Y +P + D++YD L R +A+ A P+LA ++ P ++G + Sbjct: 19 EDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPT---QRVGHLAASRFAE 75 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H++P LSL ++ E++ +F+ RI ++ + F+ EPK+DG I++RYE G+F Sbjct: 76 VRHALPMLSLGNAFSDEEVAEFVRRIG---ERLEVKQPLFSAEPKLDGLAISLRYENGEF 132 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RGDG +GEDVSA +R + IP R+ P+++EVRGEVY+ + F A N +M A Sbjct: 133 VQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRAAFEAYNAQMRA 192 Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265 G K ANPRN A+G LR+L+ R L+FF +G+G+ SE + +L ++R G Sbjct: 193 QGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQTHSAILAQLRAWG 252 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 FPV+ V G+++YY + R L +DIDG+VYK+D+ + Q+++G +R+PRW Sbjct: 253 FPVSALVEVVQGSDGLLAYYQRIGEARDGLAFDIDGVVYKLDDLAGQREMGFVSRAPRWA 312 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN D I LD Sbjct: 313 IAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-- 370 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +RVGD V+V+RAG+VIP+V ++ ++R P Q + P+ CP+C S +VR+ Sbjct: 371 ---------VRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVRE- 420 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL-------------D 492 G+ A RC+G L C AQ+ E +HFVSR A +++GLG++ + D Sbjct: 421 ---EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVAD 475 Query: 493 FFFKSEDPAFSIRI--PAD---IFTLQRRQQTST---TKIE-NILGFG-------DVSVT 536 + S D +R+ AD F + R+ ++ ++E +++G G DV T Sbjct: 476 LYLLSVDQLLQLRLISTADSPHAFLREAREHLASGAYAQLEASVVGIGVDLAGERDVPQT 535 Query: 537 --------------------------NLYDSINKRRNISLERFIFSLGI----------- 559 NL ++I R+ +LERF+F+LGI Sbjct: 536 WQADLLRAGLPSFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKAL 595 Query: 560 ----------RH-----------VGAEIARSLAKYY------------------------ 574 RH +G E+ARSL ++ Sbjct: 596 SAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDTHP 655 Query: 575 --------LSY-----------------QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LS+ Q A +++ A +L + + ++A Sbjct: 656 PSPKLREALSFASVLDDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVVA 715 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++++ P N A + + + R + + ++ + +V TGTL + R A Sbjct: 716 -TLLQWLDRPENAALASAAQQAMETVLARLPEADALQTGPLDGQTVVITGTLAALTRDAA 774 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L L + Sbjct: 775 KQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLVFLGDHG 830 >gi|294789790|ref|ZP_06755020.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453] gi|294482296|gb|EFG29993.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453] Length = 798 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 277/813 (34%), Positives = 416/813 (51%), Gaps = 147/813 (18%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++++ + YY P + DSEYD L R +A+ A+P P P ++GG + Sbjct: 14 LTEKLNRYAHEYYTLDAPSVPDSEYDRLYRELEALEMAYPTFRL---PESPTQRVGGAIL 70 Query: 84 LSLFKVTHSIPTLSLEKIWN-IEDLRKFI-TRIYRFWQK-KDD---NSIFFTLEPKIDGT 137 V H IP LSL ++ ++D KFI T F ++ + D + + +T+EPK DG Sbjct: 71 REFASVRHKIPMLSLNNAFSPLDDNGKFIHTETLAFDERVRKDLELSKVEYTIEPKFDGL 130 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++ Y+ G F+ AA RGDG +GEDV+ I+ + IP ++ IP++IEVRGEV + K Sbjct: 131 AISLLYQDGIFIQAATRGDGITGEDVTENIKTVRNIPLKLQGQYIPDLIEVRGEVLMLKK 190 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI----FA 251 DF LN IA +K +ANPRNAA+G LR+LN R L+FF +G+ + S I Sbjct: 191 DFEQLNQRQIAQNQKTFANPRNAAAGSLRQLNSRIAAERKLHFFGYGIAQFSGIQPENAP 250 Query: 252 KGQYEMLQKMRCLGF--PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 K E L ++ LGF P N AN ++ Y + + RSTLPY+IDG+V KV+ Sbjct: 251 KTHAEELLWLQDLGFSLPTGNWHICANIAE-VLQQYENLNAKRSTLPYEIDGMVIKVNSL 309 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q++LG +R+PRW I+HKF ++A T++ ID+Q+GRTG +TPVARL+PV++GG ++ Sbjct: 310 AEQEKLGFVSRAPRWAIAHKFPAEEAMTQVETIDVQVGRTGAITPVARLKPVSVGGVIVI 369 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------- 422 NATLHN+D + +DIR+GD V+V+RAG+VIP+VV +++ R Sbjct: 370 NATLHNQDEV-----------SRKDIRIGDTVVVRRAGDVIPEVVRVVLEHRPMKIVEIQ 418 Query: 423 -----------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACS 465 P+ PF P CP+C S + R+ G+ +A RCTGG+ C Sbjct: 419 SNNIQDDLFPTTKTQSVPEFPPFRLPENCPVCGSAIERE----AGEAIA--RCTGGMICK 472 Query: 466 AQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL--QRRQQTSTTK 523 AQ+ + L HF SR A +I GLG +Q++ ++D S ADI+ L ++ QQ +K Sbjct: 473 AQRSQGLIHFASRKAMDIVGLGDKQIEALV-TQDILHSF---ADIYQLDIEKLQQIKDSK 528 Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY--LSYQNFA 581 N+ I R L RF++SLGIRHVG A+ LA + L+ A Sbjct: 529 -----SSATKWAENILIGIENSRKPLLSRFLYSLGIRHVGESTAKQLANAFGDLATVRHA 583 Query: 582 QE--------INNIIAHN-------------NDD------------------------WL 596 E I +++AH+ DD WL Sbjct: 584 PEPVLACLPDIGSVVAHSIAHYFRQPEQQKLLDDLLRFVEPQHTVLTINICDFAKPARWL 643 Query: 597 SLIRVPLVGDIIAQAIVEF-----------------YQNPRNICAVEALLKEVSPSIGRH 639 S + + + AQ + + +Q+ R I ALL+E+ S+ + Sbjct: 644 SRLPSYKLSEKRAQELWDLAGNSVDGLLTDRVLPREWQDWRKIAENAALLREIDESLTKF 703 Query: 640 EK-------------NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 + ++ SEI K V TGTL ++R A + G VS +S+KTD Sbjct: 704 DSKQNEAYYLPLGTGSLKSEITGKTFVLTGTLPTLKREDAAAMIEAAGGKVSGSVSKKTD 763 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ G+ GSKLEKA LG+ ++NE++FL + Q Sbjct: 764 FVVAGEAAGSKLEKALSLGITVLNEDEFLAMFQ 796 >gi|306819948|ref|ZP_07453599.1| NAD-dependent DNA ligase LigA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551984|gb|EFM39924.1| NAD-dependent DNA ligase LigA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 675 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 237/717 (33%), Positives = 405/717 (56%), Gaps = 60/717 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 SI++AR ++ L+ EI ++ YY+ P+I D +YD + R+ ++ +P+L + P+ Sbjct: 3 SIDEARVKIEELKAEIEKNNKLYYEDDNPVISDYDYDMMMRQLISLEEKYPEL---KTPD 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P N++GG+ ++ H +SL + +LR F ++I + + + +E Sbjct: 60 SPSNRVGGKALSKFEQIRHDRVMMSLSNAFTAGELRDFDSKIKEYTKNPK-----YVVEF 114 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG + ++YEKG + A RGDG +GE+V+ + I +IP L + +EVRGE + Sbjct: 115 KIDGLTLVLKYEKGILISAGTRGDGVTGENVTQNAKTIKSIPLKLKEEVD--VEVRGEAF 172 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL-----GKT 246 I K F A+N+ I K +ANPRN A+G LR+L+P +R L+ F+ + GK Sbjct: 173 IPKEVFYAINEMQIENDEKTFANPRNMAAGSLRQLDPKITASRKLDIFIFSVENDIEGKN 232 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S +E+L ++ LG ++ + N +++ + R LP++IDG+V K+ Sbjct: 233 S------HFELLDYVKDLGMKISPEKKLCNDIEEVIAEIEKWTDKRFDLPFEIDGMVVKL 286 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +L+ ++G +++P+W I++KF ++ T++ DI +Q+GRTG+LTP A L+ V I G+ Sbjct: 287 DDIALRDEIGSTSKAPKWAIAYKFPPEKVRTKVEDIIVQVGRTGVLTPTAILDTVRISGS 346 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++ ATLHNEDYIK +DI++GD V +++AGE+IP+V ++ N R + + Sbjct: 347 MVSRATLHNEDYIK-----------EKDIKIGDYVYIQKAGEIIPEVYEVDKNARTGEER 395 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P CP+C + VR N A+ +CT ++C AQ ++ HFVS+ A +I+G Sbjct: 396 EFEMPHNCPVCGEKTVRFENE------ASWKCT-NISCKAQLQRKIIHFVSKGAMDIDGF 448 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ + F+ I+ +DI+TL+ ++N+ G+ S NL ++I + Sbjct: 449 GEKIVIQLFEEG----LIKDISDIYTLK------ADVLKNLERMGEKSANNLINAIENSK 498 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 N+SL++FIF+LGIR +GA + LAK ++ N Q + + + L + +G+ Sbjct: 499 NVSLDKFIFALGIRFIGANAGKVLAK---NFDNIGQLMESSVDR-------LTAIDEIGE 548 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +A +IVEF++ N VE LL I + + S N K+V TGTL+K +R Sbjct: 549 KMAMSIVEFFEIQSNRDLVEKLLALGVNPISKSNSSQKSIFLNLKVVATGTLEKFKRDDI 608 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 Q+ V + G +S+ +S+KT+ ++ G+ GSKL+KA QLGVK+++E F LL +T Sbjct: 609 QKIVEENGGKLSSSVSKKTNFVVAGEAAGSKLDKANQLGVKVISENDFEKLLTLDDT 665 >gi|331702040|ref|YP_004398999.1| DNA ligase [Lactobacillus buchneri NRRL B-30929] gi|329129383|gb|AEB73936.1| DNA ligase [Lactobacillus buchneri NRRL B-30929] Length = 675 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 241/715 (33%), Positives = 398/715 (55%), Gaps = 55/715 (7%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + E +S +QA + L ++++ D YY Y P + D+ YD ++ A+ + FP + Sbjct: 1 MAFENMSEQQAAAKAGDLRKQLNQWADEYYTYDAPSVEDAVYDQTYQQLVALENQFPQIV 60 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P K+G KV H IP LSL +++ E+L +F+ R+ + D + Sbjct: 61 T---PDSPTQKVGDHTLPGFTKVNHEIPMLSLGDVFSKEELAEFVDRL----SENDSVAF 113 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + E KIDG I +RYE G FV + RG+G GED++ ++ I +IP+ L+ P IE Sbjct: 114 DYNCELKIDGLAINLRYENGVFVQGSTRGNGQIGEDITRNLKTIKSIPQKLTR--PINIE 171 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 VRGE Y+ K F LN++ G +P+ANPRNAA+G LR+L+P +R L+ F++ + Sbjct: 172 VRGECYMPKESFAKLNEQRQLDGEEPFANPRNAAAGSLRQLDPRVTRSRKLSTFMYNVAD 231 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 ++ + Q ML +++ LGF +N + A+ I +Y ++ K +R LPY IDG+V K Sbjct: 232 IDDLQSDTQSGMLAELKELGFTINPDFKVAHNMADIDNYVDKYKDLRDGLPYGIDGIVIK 291 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ LQ+ LG + PRW I++KF ++ T + DI+ +GRTG++TP A ++PV + G Sbjct: 292 VNSLPLQRSLGATVKVPRWAIAYKFPPEEVQTIVRDIEWTVGRTGVVTPTAVMDPVTLAG 351 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ++ A+LHN DY+ +DIRVGD V + +AG++IP++ + ++R ++ Sbjct: 352 STVSRASLHNPDYL-----------AEKDIRVGDTVKLHKAGDIIPEISQYLPDKRPANS 400 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 Q + P+ CP C S +V L+ + A RC C AQ E L HF SRDA NI+G Sbjct: 401 QAYEIPTQCPSCGSTLVH-LDQEV-----ALRCINP-QCPAQLKEGLTHFASRDAMNIDG 453 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + + F+ + A ++ L Q + K FG+ S T L +I+ Sbjct: 454 LGPKIIAQLFEKH----MVSDVAGLYDLSFDQLLTLDK------FGEKSATKLLAAIDNS 503 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R+ S ER ++ LGIRHVG + AR +A+ + + I+ ++ + D + + +G Sbjct: 504 RSNSCERLLYGLGIRHVGIKAARLIAQRF-------KNIDKVMQASAQD---IAEIATMG 553 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVS---SEIENKKLVFTGTLQ 659 IIA ++V ++ P + ++ LK+V + +G ++ ++ S KK V TG LQ Sbjct: 554 MIIADSVVTYFSMPESKQLIDQ-LKQVGVNMDYLGVTDEQLAESDSFFTGKKFVLTGKLQ 612 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 I R A +++ GA VS+ +S+ TDI++VG++PGSK +KA+ LG++ +E +F Sbjct: 613 NITRPDATQWLEDHGAKVSSSVSKNTDIVVVGEDPGSKYDKAKSLGIQTWDEARF 667 >gi|227523032|ref|ZP_03953081.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290] gi|227089850|gb|EEI25162.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290] Length = 675 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 249/717 (34%), Positives = 386/717 (53%), Gaps = 59/717 (8%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + E ++ +QA L ++++ D YY Y P + DS YD ++ + FP + Sbjct: 1 MAFEDMTEQQAESAARELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV 60 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P K+G KV H IP LSL +++IE+L+ F R+ D S+ Sbjct: 61 T---PDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADRL------SDSESV 111 Query: 127 FF--TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 F E KIDG I++RYE G V A RG+G GED++ ++ I +IP+ LS P Sbjct: 112 PFEYNCELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIPQRLSR--PIN 169 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 IEVRGE Y+ K F+ LN + G P+ANPRNAA+G LR+L+ R L+ F++ + Sbjct: 170 IEVRGECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNV 229 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 ++ + Q ML++++ LGF +N+ + A+ I Y R TL Y IDG+V Sbjct: 230 ANYDDLESDTQSGMLEELKKLGFTINSDYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIV 289 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ LQ+ LG + PRW I++KF ++A T + DI+ +GRTG++TP A ++ V + Sbjct: 290 IKVNSLPLQRSLGATVKVPRWAIAYKFPPEEAETTVRDIEWTVGRTGVVTPTAVMDEVTL 349 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ A+LHN DY++ +DIR+GD V + +AG++IP++ + ++R Sbjct: 350 AGTTVSRASLHNPDYLQ-----------EKDIRIGDTVRLHKAGDIIPEISTYVKDKRQV 398 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D+QP+ P+ CP C S +V L+ + A RC C AQ E L HF SRDA NI Sbjct: 399 DSQPYEIPTECPSCGSELVH-LDEE-----VALRCINP-QCPAQLKEGLTHFASRDAMNI 451 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG + + FK + A ++ L Q + K FG+ S NL +I+ Sbjct: 452 DGLGPKIIGQLFKKH----MLTDVAGLYGLTFDQLMTLDK------FGEKSAGNLLAAID 501 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 RN S ER +F LGIRHVGA+ AR +A+ + + IA + Sbjct: 502 NSRNNSCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDATAQEIAE----------IDT 551 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHE---KNVSSEIENKKLVFTGT 657 +G IIA ++V ++ P++ + + LK+V + +G + K S K+LV TG Sbjct: 552 MGMIIADSVVTYFSMPQSKELI-SQLKQVGVNMDYLGATDEALKESDSVFNGKRLVLTGK 610 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LQ I R +A ++ GA VS +S+KTDI++VG++PGSK +KA+ LG+ + +E +F Sbjct: 611 LQHITRPEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIDVWDENRF 667 >gi|313903518|ref|ZP_07836909.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965] gi|313466339|gb|EFR61862.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965] Length = 817 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 235/614 (38%), Positives = 347/614 (56%), Gaps = 51/614 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E AR + +L ++I +HD YY +P I D+ YDAL R+ + FP+L P+ Sbjct: 54 LEAARARVEALREQIRHHDYLYYVLDRPEIDDAAYDALMRQLRELEQRFPELV---TPDS 110 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG +V H+ P LSL+ ++ E+L F R+ R DD + + E K Sbjct: 111 PTQRVGGRPAAPFARVEHAEPMLSLDNAFSREELEAFDQRVRR--AVGDD--VAYVAELK 166 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGE 190 IDG I + YE G+FV A RGDG +GEDV+A +R I ++P R +P +E+RGE Sbjct: 167 IDGLSIALTYEGGRFVRGATRGDGEAGEDVTANLRTIRSLPLRLRDRERPVPRRVEIRGE 226 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTS 247 VY++ + F LN E A G P+ANPRNAA+G +R+L+P +R LN +V+ L + Sbjct: 227 VYMTFDAFRRLNQEQEARGLAPFANPRNAAAGSVRQLDPAVTASRSLNLWVYALAGWEGD 286 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E + Q+E+LQ +R G PVN R+ + +Y +E R LPY DG+V KVD Sbjct: 287 EPAPRSQWEVLQTLRAWGLPVNPHARRCTGLDELFAYIDEWAERRHQLPYLTDGIVIKVD 346 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q+QLG ARSPRW I++KF ++A TR+ DI + +GRTG LTPVA L+PV + G Sbjct: 347 DLEQQRQLGATARSPRWAIAYKFPAEKARTRVRDILVSVGRTGALTPVAVLDPVLLAGTT 406 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ A+LHN DYI+ +D+R+GD V+V +AGE+IP+VV+++ R +P Sbjct: 407 VSRASLHNADYIR-----------EKDVRIGDLVVVHKAGEIIPEVVEVVKEARTGAERP 455 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 FS P CP C S VVR G+ AA RC AC AQQLER++HF SRDA +IEGLG Sbjct: 456 FSMPERCPACGSPVVR----VEGE--AATRCPNA-ACPAQQLERIRHFASRDAMDIEGLG 508 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ +R AD++ L+ + + G S NL +I+ R Sbjct: 509 PAIIEQLVGR----GLVRDVADLYHLE------PEPLAQLERMGPKSAANLVAAIDASRG 558 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R ++ LGIR VG +A LA+++ + I ++A D+ L+ VP +G Sbjct: 559 RPLRRLLYGLGIRFVGERVAGLLARHFGT-------IQRLMAAGPDE---LMAVPEIGPR 608 Query: 608 IAQAIVEFYQNPRN 621 IA+++V F+++ N Sbjct: 609 IAESVVIFFRDEHN 622 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 47/77 (61%) Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 V + K VFTG L + R +AQE V LG + +SRKTD ++ G+ GSKL +A Sbjct: 734 EVRERVAGKTFVFTGGLASMTRDEAQELVEALGGRATGSVSRKTDYVVAGEGAGSKLARA 793 Query: 702 QQLGVKIMNEEQFLFLL 718 ++LG+ +++E FL L+ Sbjct: 794 RELGIPVLDEAAFLRLV 810 >gi|270307958|ref|YP_003330016.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS] gi|270153850|gb|ACZ61688.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS] Length = 680 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 250/718 (34%), Positives = 377/718 (52%), Gaps = 65/718 (9%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ +L +EI+ H+ YY P I DSEYDAL RR + A P+L PN P ++G Sbjct: 10 EIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELV---TPNSPTQRVG 66 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTM 138 E + V H P LSL ++ +L + R+ + N+ F EPK+DG Sbjct: 67 AEPLKAFGIVNHPYPLLSLANAFSDTELEAWYLRVKKLL----GNAAFQIDCEPKMDGLA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + Y GKF A RGDG GE+++ +R I +IP + P + E+RGEVY+ K F Sbjct: 123 VALTYRNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPPVFEIRGEVYLPKEGF 182 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYE 256 LN E G +ANPRNAA+G LR+L+P R L+ F++ LG + + ++ Sbjct: 183 AKLNCERADKGLSLFANPRNAAAGSLRQLDPLVTAERPLDIFIYALGYAEDSLLPDSHWQ 242 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ LGF +N R NT YY EM R +LPY+ DG+V+KVD SLQK+LG Sbjct: 243 ILEYFSRLGFRINPRNRLVNTLAEAKEYYREMTENRDSLPYEADGVVFKVDSVSLQKKLG 302 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + R PRW I++KF +Q +T L I I +GRTG L P A LEPVN+GG ++ A+LHNE Sbjct: 303 DAGREPRWAIAYKFPAEQVTTLLRKIGISVGRTGTLNPYAILEPVNVGGVVVKQASLHNE 362 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF------ 430 D ++R +DIR GD V+++RAGEVIP+VV ++ +R P+++PFS Sbjct: 363 D---------DILR--KDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSMEETLFN 411 Query: 431 PSF----CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C + R A H C ++C AQ +L+HFVSR A +I G+ Sbjct: 412 PKLSRPACPVCGGEIYRPAGE------AMHYC-ANVSCPAQFERQLEHFVSRGAMDIRGI 464 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + L E ++ +D++ L + + + G+ S N+ +I+ + Sbjct: 465 G-ESLSVILAQEGLVKNV---SDLYYL------TAADLLKLPRMGEKSADNIIKAISDSK 514 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + L+R IF LGIRHVG E A L+ Y +I A L +P +G Sbjct: 515 SRPLDRVIFGLGIRHVGNETAALLSSRY----------GDIWALAGAGLDKLQTIPDIGA 564 Query: 607 IIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 IA +I ++ +NI + L +K S H+ S +E V TG L+ + Sbjct: 565 KIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPSHKSLPLSGVE---FVVTGKLESLS 621 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + Q+ + LG +++ T ++VG + GSKL KA+ +GVK ++E++ + +L+Q Sbjct: 622 REETQQKIRSLGGTAKDNVTKATRYLVVGADAGSKLAKARSMGVKELSEQELINMLEQ 679 >gi|91204173|emb|CAJ71826.1| strongly similar to DNA ligase [Candidatus Kuenenia stuttgartiensis] Length = 674 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 250/713 (35%), Positives = 391/713 (54%), Gaps = 57/713 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L I YHD YY + P I D EYD L R + A P+L P+ P + Sbjct: 6 KEKIEQLRCIIRYHDYKYYVENNPEISDYEYDQLLRELQNLESAHPELI---TPDSPTQR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + + V H P LS++ ++ E+L++F RI R + +I + +E KIDG Sbjct: 63 VADQPISQFPTVEHKKPMLSIDNTYSNEELKEFDQRIKRMAGIDANTNIEYVVELKIDGI 122 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGEVY 192 IT+ YE G FV A RGDG G+DV+A ++ I IP LS++ IP ++E+RGE+Y Sbjct: 123 AITLWYENGLFVRGATRGDGFRGDDVTANLKTIRQIPLKLSVSGAHYKIPPVVEIRGEIY 182 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + +F +N+E G +ANPRNAA+G L+ L+P R L F + +G + Sbjct: 183 LPNKEFQRINEEREEKGEIQFANPRNAAAGSLKLLDPRITAKRRLKMFAYVIGYVEGMEL 242 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + + L ++ +G PVN+ + +V Y NE R L Y +DG+V KV+ +L Sbjct: 243 ESHVQCLDFIKAIGLPVNSYAQLCKNIDEVVRYCNEWDKRRGILDYMVDGMVIKVNSLAL 302 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG +++PRWMIS KF +QA TR+ +I +Q+G+TG LTPVA L PV + G ++ A Sbjct: 303 QEQLGATSKAPRWMISFKFQPEQAITRIEEIVVQVGKTGTLTPVANLAPVLLAGTTVSRA 362 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN D +K +D+RVGD V+V++AGE+IP+VV ++ +R + F P Sbjct: 363 SLHNFDEVK-----------RKDVRVGDYVVVQKAGEIIPQVVKVLEEKRSGREKVFVEP 411 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C+ V RD + RC L C AQ R+++F RDA +IEGLG + Sbjct: 412 ACCPVCKGPVHRDNSE------VYLRCHNPL-CKAQTKRRIQYFAGRDAMDIEGLGPAII 464 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + D + +DIF+LQ + N+ G S +NL +I R L+ Sbjct: 465 EQLV---DKGL-VDDYSDIFSLQ------YDDLVNLERMGKKSSSNLISAIENSRGRDLD 514 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R I +LGI +VG A L++++ S + ++ D+ L ++ +G ++AQ+ Sbjct: 515 RLICALGIHNVGLHTAEVLSEHFDS-------LGKLLNATADE---LKKIHEIGPVVAQS 564 Query: 612 IVEFYQNPRNICAVEALL------KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 IVEF+QN ++ L+ ++++ I R SS++ K V TG LQK R Sbjct: 565 IVEFFQNKHTREIIKKLVAKGVNTEKLTSDIPRK----SSKVAGKSFVITGKLQKYSRSD 620 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A++ + +LG VS+ +S KT+ +I G++PGSKL KA++LGV I++EE F L+ Sbjct: 621 AEKLIKRLGGRVSSAVSGKTNYLIAGEDPGSKLGKAKELGVVILDEEAFDLLV 673 >gi|225025741|ref|ZP_03714933.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC 23834] gi|224941522|gb|EEG22731.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC 23834] Length = 778 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 274/806 (33%), Positives = 409/806 (50%), Gaps = 139/806 (17%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + +L Q ++ + YY P + D+EYD L R +A+ P P P + Sbjct: 5 QQRIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELEALEAEHPQF---RLPESPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIED-------LRKFITRIYRFWQKKDDNSIFFTL 130 +GG + V H++P LSL ++ D +F+ R ++ + + Sbjct: 62 VGGAVLDGFETVVHAVPMLSLNNAFSPRDDETGAFDHAEFLAFDERVCKELGVAQVEYAA 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189 EPK DG +++ Y+ G V AA RGDG +GE+V+ I+ + IP R+ P ++EVRG Sbjct: 122 EPKFDGLAVSLLYQNGILVQAATRGDGTTGENVTENIKTVRNIPLRLHGEKQPALLEVRG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247 EV + K DF ALN + G+KP+ANPRNAA+G LR+L+ + IT R L+FF +G+ + S Sbjct: 182 EVLMLKADFAALNQRQLEAGQKPFANPRNAAAGSLRQLD-SKITAQRKLHFFAYGIAQLS 240 Query: 248 --EIFAKGQYEMLQKMRCLGFPVNNGVRQANT-FHGIVSYYNEMKSIRSTLPYDIDGLVY 304 E + E L + +GF + G A T ++ Y + R LPY+IDG+V Sbjct: 241 GVERLPESHMEELALLHEIGFSLPKGYFGAYTGAAAVLREYERLAEHRPRLPYEIDGMVV 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q+QLG +R+PRW I+HKF ++A T + ID+Q+GRTG +TPVARL PV +G Sbjct: 301 KVNSLAEQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGAVTPVARLAPVFVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER--- 421 G +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +++ R Sbjct: 361 GVTVTNATLHNQD---------EVAR--KDVRVGDTVVVRRAGDVIPEVVRVLLERRPMQ 409 Query: 422 ---------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472 P +PF P CP+C S V R+ G+ VA RCTGG+ C AQ+ + L Sbjct: 410 PVDLLGEQMEPLHEPFRLPETCPVCGSAVERE----AGEAVA--RCTGGMLCQAQRAQGL 463 Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532 HF SR A +I GLG +Q++ ++ + ADI+ L K++ I G Sbjct: 464 IHFASRKAMDIAGLGDKQIEALVAAD----VLHSFADIYRL------DIAKLQTIKD-GK 512 Query: 533 VSVT----NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ------ 582 + T N+ DSI + R L RF+F+LGIRHVG A+ LA + + + Sbjct: 513 SAATKWAQNILDSIAQSRTPPLARFLFALGIRHVGESTAKQLAAAFGNLDTVRRAPEPIL 572 Query: 583 ----EINNIIAHN-------------NDDWLS----------------------LIRVP- 602 +I +++AH DD L L R+P Sbjct: 573 ACLPDIGSVVAHAIAHYFRQPAQQKMLDDLLQHVAPQAAAPSPQTRANAAPEQWLQRLPN 632 Query: 603 -------------LVGDIIA----QAIVEFYQNPRNICAVEALLKEVSP----------- 634 L G + A QA+ + +QN R A ALL+E++ Sbjct: 633 IKLSEKRAAELWQLAGSLHALQTDQALPQEWQNWRRQPAHAALLQEITAFTEALPESSTD 692 Query: 635 --SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 S H +N I K V TGTL ++R +A + G VS +S+KTD ++ G+ Sbjct: 693 NVSGSLHPEN--HPIAGKTFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFVVAGE 750 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLL 718 GSKLEKAQ LGV +++EE+ L +L Sbjct: 751 AAGSKLEKAQALGVAVLSEEELLGML 776 >gi|126659779|ref|ZP_01730906.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110] gi|126618931|gb|EAZ89673.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110] Length = 677 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 245/718 (34%), Positives = 389/718 (54%), Gaps = 52/718 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E L +EQ ++ L Q++ + YY PI+ D+ YD L R D + P L Sbjct: 3 VENLGVEQ---RVTQLRQQLQKANYAYYVLDDPIMEDAVYDQLYRELDNLEKEHPQLIT- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P ++G + VTH+IP SLE +N+++L+ + R R+ +K+D ++I + Sbjct: 59 --PDSPTQRVGDKPASQFVSVTHNIPLYSLENAFNLDELKAWKNRWQRYSEKEDLDTIEY 116 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEV 187 E KIDG+ + + YE G + RGDG +GED++ IR I +IP L+L N P +IEV Sbjct: 117 VCELKIDGSALALTYENGLLIRGVTRGDGTTGEDITQNIRTIRSIPLKLNLDNPPPMIEV 176 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246 RGE ++ ++F +N E G +ANPRNAA+G LR+L+P + R L FF + L Sbjct: 177 RGEAFLPLDEFDRINQEREEKGEALFANPRNAAAGTLRQLDPKIVDQRRLQFFAYTL-HL 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E Q++ L ++ GF VN + + + Y+ + ++ R LPY DG+V K+ Sbjct: 236 EETEISSQWQSLNYLQNSGFLVNPHRKLCQSLDEVADYFKQWETARKDLPYMTDGVVVKI 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 +++SLQK LG + PRW I+ K+ ++A T + DI + +GRTG +TP+A ++PV++ G Sbjct: 296 NDYSLQKALGFTQKFPRWAIALKYPAEEAPTIVKDIIVNVGRTGAVTPMAVMKPVHLAGT 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D I L DIRVGD V++++AGE+IP+VV ++ R PD Q Sbjct: 356 TVQKATLHNSDRISQL-----------DIRVGDTVIIRKAGEIIPEVVRVLKELRPPDTQ 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ P CP C S ++R P+ L RC L+C+A L H+ SRDA +I GL Sbjct: 405 PYEMPDRCPECNSLLIRP--PEEAVL----RCM-NLSCNAILKGSLVHWSSRDALDIRGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ + +E + AD++ L + KI N+ G S NL +I + Sbjct: 458 GERIVVLLIDNE----LVNSIADLYYL------TPEKIANLERMGSKSADNLIKAIEGSK 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 R ++ LGIR+VG+ A L + +LS +Q + SL V VG Sbjct: 508 QQPFSRVLYGLGIRYVGSVTANLLTENFLSIDQLSQA----------SFTSLCSVYGVGG 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 IAQ+I++++ +N ++ L K E++ S ++ + + K V TGTL + Sbjct: 558 EIAQSIIDWFSIQKNYDLIQQLKKVGLQLEITSSEKNTVESSLTPLSGKTFVITGTLPTL 617 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+ + + G V+ +S+KTD +++G+N GSKL KAQ+LG+ ++E L LQ Sbjct: 618 NRTEAKTLIEKAGGKVTGSISKKTDYLLLGENAGSKLIKAQELGITQLSEADLLAFLQ 675 >gi|289663144|ref|ZP_06484725.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 833 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 261/836 (31%), Positives = 416/836 (49%), Gaps = 169/836 (20%) Query: 32 DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 +D Y+Y +P + D +YD L R +A+ +P LA ++ P ++G + Sbjct: 19 EDANYRYHVLDEPQMADVDYDRLMRELEALEAEYPQLASADSPT---QRVGHLAASRFAE 75 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H++P LSL +N E++ +F+ RI ++ + F+ EPK+DG I++RYE G+F Sbjct: 76 VRHALPMLSLGNAFNDEEVTEFVRRIS---ERLEVKQPLFSAEPKLDGLAISLRYENGEF 132 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RGDG +GEDVSA +R + IP R+ P+++EVRGEVY+ + F + N +M A Sbjct: 133 VQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPQVLEVRGEVYMPRAAFESYNAQMRA 192 Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265 G K ANPRN A+G LR+L+ R L+FF +G+G+ SE + + +L ++R G Sbjct: 193 QGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGVLPQTHSAILAQLRAWG 252 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 FPV++ V G+++YY + + R L +DIDG+VYK+D+ + Q+++G +R+PRW Sbjct: 253 FPVSSLVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQREMGFVSRAPRWA 312 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN D I LD Sbjct: 313 IAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-- 370 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +RVGD V+V+RAG+VIP+V ++ ++R P Q + P+ CP+C S +VR+ Sbjct: 371 ---------VRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVRE- 420 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ---------------- 489 G+ A RC+G L C AQ+ E +HFVSR A +++GLG++ Sbjct: 421 ---EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVQGVAD 475 Query: 490 ----------QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE---NILGFGDVSVT 536 QL +E P +R + Q TT + ++ G +V T Sbjct: 476 IYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAYAQLETTVVGIGVDMAGEREVPPT 535 Query: 537 --------------------------NLYDSINKRRNISLERFIFSLGI----------- 559 NL ++I R+ +LERF+F+LGI Sbjct: 536 WQADLLRAGLPKFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKAL 595 Query: 560 ----------RH-----------VGAEIARSLAKYYLSYQNFAQEINNII---------- 588 RH +G E+AR+L ++L Q I++++ Sbjct: 596 SAWFGDLELIRHLPWPLFKRVPDIGGEVARALG-HFLDQPGNQQAIDDLLQRGVRIGDTH 654 Query: 589 --------AHNNDDWLSLIRVPLVGDIIAQ------------------------------ 610 A + L + +P V + AQ Sbjct: 655 PPSPKLREALSFASVLEDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVV 714 Query: 611 -AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A++++ P N A + + + R + + ++ + +V TGTL + R A Sbjct: 715 AALLQWLDRPENAALASAAQQAMETVLARLPEADALQTGPLDGQSVVITGTLAALTRDAA 774 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV I +E + L L ++ Sbjct: 775 KQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVDIWDEARLLAFLSEHG 830 >gi|284166901|ref|YP_003405180.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511] gi|284016556|gb|ADB62507.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511] Length = 692 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 250/722 (34%), Positives = 381/722 (52%), Gaps = 52/722 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 P+ LS ++AR+++ L + I HD YY S P+I D YDAL R + AF Sbjct: 20 FAPVGELSEDEAREQVELLREAIREHDRRYYVESDPVIADRTYDALFARLRDLEDAF--- 76 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 E P+ P +GGE V H P LS+++ D+R+F R+ R D Sbjct: 77 -GLEHPDSPTRSVGGEPLEEFETVEHVAPMLSIDQSGEEADVREFADRVQREVGDVD--- 132 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + EPK DG + YE G+ AA RGDG G+DV+ R I ++P+ L + PE + Sbjct: 133 --YVCEPKFDGVSMEFVYEDGRLERAATRGDGREGDDVTRNARTIGSVPQKLHGDYPEFL 190 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244 VRGEVY+ K+ F A N E I G +P+ANPRNA +G +R+L+P+ + R L F + Sbjct: 191 AVRGEVYMPKDAFQAHNRERIERGEEPFANPRNATAGTIRQLDPSIVADRPLEVFFFDVL 250 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ E L++ G V + V A+ ++Y + M R L Y+IDG V Sbjct: 251 EASDLEDSHSAE-LERFPDWGLRVTDHVELADDIDEAIAYRDRMLEARDDLNYEIDGTVI 309 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD+ +++LG AR R+ ++KF + T ++D+ +Q+GRTG LTPVA LEPV++G Sbjct: 310 KVDDRESREELGRTARHDRYAFAYKFPARAEVTPIVDVAVQVGRTGRLTPVALLEPVDVG 369 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ A+LHN D I+ +++ VGD V V+RAG+VIP V +++ E+ + Sbjct: 370 GVTVSRASLHNPDEIE-----------EKNVNVGDTVRVQRAGDVIPYVEEVV--EKDSE 416 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + P CP+C S V RD G + CTGGLAC AQ ++++ D ++E Sbjct: 417 GH-YDLPDRCPVCDSAVERD-----GPMAF---CTGGLACDAQLRRSIEYYAGDDGLDLE 467 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ + A + AD++ L R T ++ G+G+ S N+ I Sbjct: 468 GLGEKSVRQLVD----AGLLESVADLYELDREDLT------DLEGWGETSAENVLAEIEA 517 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R L F+ +LGI HVG AR LA+ + +++ F + D+ L VP V Sbjct: 518 SREPPLAEFLSALGIPHVGPTTARELAREFGTFEAFREAA-------EDEPERLEDVPDV 570 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G+ +A+ + EF+ + N AV+ LL+ VSP E E+E VFTG+L+ + R Sbjct: 571 GETVAEQLHEFFTSEANAAAVDDLLEHVSPQESDLETG-GDELEGLTFVFTGSLEGMTRG 629 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +AQE V GA + +S TD ++VG+NPG +K + A V I++E++F LL Y Sbjct: 630 EAQEAVEAHGANATGSVSGNTDYLVVGENPGQTKRDDAAANDVPIIDEDEFRELLAGYGI 689 Query: 724 TL 725 L Sbjct: 690 DL 691 >gi|163789388|ref|ZP_02183827.1| DNA ligase, NAD-dependent [Carnobacterium sp. AT7] gi|159875242|gb|EDP69307.1| DNA ligase, NAD-dependent [Carnobacterium sp. AT7] Length = 673 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 254/723 (35%), Positives = 386/723 (53%), Gaps = 76/723 (10%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +Q +L +L + SY YY P I D++YD L A+ FPDL ++ P Sbjct: 8 SAKQRVFDLRTLLDKYSYE---YYVKDTPSIPDADYDKLYHELVALEEEFPDLISNDSPT 64 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++GG + KV H +P LSL +N DL F RI +K D + E Sbjct: 65 ---QRVGGTILPGFEKVVHEVPMLSLGNAFNEGDLLDFDRRI----KKLTDKPFSYICEL 117 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG ++++YEKGK V AA RGDG GE+V+ IR + ++P L L IEVRGE Y Sbjct: 118 KIDGLAVSLKYEKGKLVRAATRGDGTVGENVTQNIRTVKSVP--LRLKNAYSIEVRGECY 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + K+ F+ LN + G +ANPRNAA+G LR L+ + R LN F++ +G E+ A Sbjct: 176 MPKDSFIKLNQDREENGEAIFANPRNAAAGGLRNLDTKETAKRNLNTFLYTVGDFGELTA 235 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q + L ++ LG N R T + +Y E + R+ LPY+IDG+V KV+EF + Sbjct: 236 ISQEDALHQLDELGLRTNQDRRVFQTIEEVWAYTQEFQEKRTALPYEIDGIVIKVNEFDV 295 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 QK++G ++PRW I++KF ++A T + DI+ +GRTG++TP A ++PV + G + A Sbjct: 296 QKEVGFTVKAPRWAIAYKFPAEEAHTVIRDIEWSVGRTGVVTPTAIMDPVQLAGTTVQRA 355 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHNED I RDIR+ D V+V +AG++IP+V ++++ER ++QP+ P Sbjct: 356 SLHNEDLIH-----------ERDIRLLDTVVVHKAGDIIPEVTRVVLDERPEESQPYLIP 404 Query: 432 SFCPICQSRVV--------RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + CP C S ++ R +NPK C AQ E L HFVSR+A NI Sbjct: 405 THCPACDSELIHLEEEVALRCMNPK---------------CPAQITEGLSHFVSRNAMNI 449 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG + L F+ E + AD++TL Q + KI+ + S NL +I+ Sbjct: 450 DGLGIKVLLQMFEKE----MVHDVADLYTLTFNQLVTLDKIK------EKSANNLLTAID 499 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-------EINNIIAHNNDDWL 596 R+ SLER +F LGIRHVGA+ A+ +A+ + + + Q I I D + Sbjct: 500 ASRSNSLERLLFGLGIRHVGAKAAKLIAERFETIEAVQQAEKEAIIAIEGIGEIIADSVV 559 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 + +P V ++I E + N+ + +EV+ V S K +V TG Sbjct: 560 AYFSLPEVTELIQ----ELKNSQVNMTYLGKKKEEVA--------TVDSYFNGKTIVLTG 607 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L R +A+E + LG V+ +S+KTD+++ G+ GSKL+KA+ L + + +E+Q L Sbjct: 608 KLTHFTREEAKERIENLGGNVTGSVSKKTDLVVAGEEAGSKLDKAESLNILVWDEDQLLK 667 Query: 717 LLQ 719 L+ Sbjct: 668 ALE 670 >gi|325915467|ref|ZP_08177781.1| DNA ligase, NAD-dependent [Xanthomonas vesicatoria ATCC 35937] gi|325538349|gb|EGD10031.1| DNA ligase, NAD-dependent [Xanthomonas vesicatoria ATCC 35937] Length = 833 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 266/836 (31%), Positives = 415/836 (49%), Gaps = 169/836 (20%) Query: 32 DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 +D Y+Y +P + D +YD L R +A+ P LA ++ P ++G + Sbjct: 19 EDANYRYHVLDEPQMADVDYDRLMRELEALEAEHPALATADSPT---QRVGHLAASRFAE 75 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H++P LSL ++ E++ +F+ RI ++ + F+ EPK+DG I++RYE G+F Sbjct: 76 VRHALPMLSLGNAFSDEEVSEFVRRIS---ERLEVKQPVFSAEPKLDGLAISLRYEDGEF 132 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RGDG +GEDVSA +R + IP R+ P+++EVRGEVY+ + F A N M A Sbjct: 133 VQGATRGDGATGEDVSANLRTVKAIPLRLRGQGWPKVLEVRGEVYMPRAAFEAYNAHMRA 192 Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCLG 265 G K ANPRN A+G LR+L+ R L+FF +G+G+ + +L ++R G Sbjct: 193 QGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVGNGALPQTHSAILAQLRDWG 252 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 FPV+ V G+++YY + + R L +DIDG+VYK+D+ + Q+++G +R+PRW Sbjct: 253 FPVSQLVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQREMGFVSRAPRWA 312 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN D I LD Sbjct: 313 IAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-- 370 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +RVGD V+V+RAG+VIP+V ++ ++R P Q + P+ CP+C S +VR+ Sbjct: 371 ---------VRVGDTVIVRRAGDVIPEVAGVVADQRQPGTQEWRMPTHCPVCGSEIVRE- 420 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL-------------D 492 G+ A RC+G L C AQ+ E +HFVSR A +++GLG++ + D Sbjct: 421 ---EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVQGVAD 475 Query: 493 FFFKSEDPAFSIRI--PAD---IFTLQRRQQTST-------------------------T 522 + + D +R+ AD F + R+ +T T Sbjct: 476 LYLLTVDQLLQLRLISTADSPHAFLREAREHLATGAYAQLEATMMRIGVDLAGEHEAPQT 535 Query: 523 KIENILGFGDVS------------VTNLYDSINKRRNISLERFIFSLGIRHV-------- 562 ++L G S NL ++I RN +LERF+F+LGI HV Sbjct: 536 WQADLLRAGLPSFDWNRRKIATKWAENLIEAIETSRNTTLERFLFALGIEHVGESTAKAL 595 Query: 563 ------------------------GAEIARSLAKYYLSYQNFAQEINNII--------AH 590 G E+ARSL ++ N Q I++++ AH Sbjct: 596 SAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQPGN-QQAIDDLLQRGVRIGDAH 654 Query: 591 NND----DWLSLIRV------PLVGDIIAQ------------------------------ 610 D LS V P V + AQ Sbjct: 655 PPSPKLRDALSFASVLEDMDIPKVTPVRAQQLAAAVPSFDALRDAGSDALLQAGVPAPVV 714 Query: 611 -AIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A++++ P N + + + + R E + ++ + +V TGTL + R A Sbjct: 715 AALLQWLDRPENAALATSAQRAMETVLARLPEAEAVQAGPLDGQTVVITGTLTALTRDAA 774 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L L ++ Sbjct: 775 KQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLAEHG 830 >gi|297544111|ref|YP_003676413.1| NAD-dependent DNA ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841886|gb|ADH60402.1| DNA ligase, NAD-dependent [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 662 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 243/706 (34%), Positives = 395/706 (55%), Gaps = 49/706 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L ++I+YH+ YY +P I D EYD L R + +P+L + P+ P + Sbjct: 4 KERIKELREKINYHNYKYYVLDQPEISDYEYDMLMRELIELEEKYPEL---KTPDSPSQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE TH +P LSL ++ +L+ F R+ ++ + + +E KIDG Sbjct: 61 VGGEPLKEFEPFTHIVPMLSLANAFSEGELKDFDRRV-----REAVGDVEYVVELKIDGL 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G F + RGDG +GE+V+ ++ I +IP L N+ + VRGEV++ + Sbjct: 116 SVELIYENGIFTVGSTRGDGITGENVTPNLKTIKSIPLRLKDNVSLV--VRGEVFMPRAS 173 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E +G +ANPRNAA+G LR+L+P R L+ F+ L + K E Sbjct: 174 FERLNTEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQRVEGRKFKTHVE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ GF V ++ + ++ E+++++ LPYDIDG V KV++ ++ LG Sbjct: 234 TLEFLKEQGFKVIPIHKKCSNIDEVIREIEEIRNLKDKLPYDIDGAVVKVNDLEKREILG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + A+ PRW I+ K+ ++ T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE Sbjct: 294 QTAKEPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYIK +DIR+GD V++++AGE+IP+VV++I ER + F P CP+ Sbjct: 354 DYIK-----------EKDIRIGDTVIIQKAGEIIPEVVEVIKEERTGQEREFVMPDRCPV 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VR G+ A RCT + C AQ L + HF S+DA +IEGLG ++ Sbjct: 403 CGALAVR----LPGE--AVRRCT-SVNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I AD++ L+ ++ GD SV NL ++I + + L+R +F Sbjct: 456 N----GLIHNIADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G++ A+ +A+++ + I++I+ +D+ L P VG +A++IV F+ Sbjct: 506 LGINLIGSKAAQVIAEHF-------KTIDDIMKAKFEDFTKL---PDVGPKMARSIVSFF 555 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +N+ +E L K ++ VSS E K V TG L R +A + + G Sbjct: 556 AEKQNVETIEKLKKAGVNMKKLSKEKVSSIFEGKTFVLTGALGNYTREEATRIIEERGGK 615 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 V+ +S+KTD ++VG +PGSKL+KAQ+LG++I++E+QF +L+ N Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIEIIDEKQFEEMLKGEN 661 >gi|256847801|ref|ZP_05553246.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN] gi|256715490|gb|EEU30466.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN] Length = 674 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 242/717 (33%), Positives = 406/717 (56%), Gaps = 50/717 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E +++ +A+KE+ L Q++ YY+ P + D YD +R + FP+L Sbjct: 4 EQITLAEAKKEIGPLRQQLIQWGKEYYEQDNPSVEDYVYDRQYQRLVELEARFPELVT-- 61 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG+ + L KVTH IP LS+ ++++E+L F R + D I + Sbjct: 62 -PDSPTQRVGGQTDTQLAKVTHDIPMLSMGDVFSVEELHAFNER--QQSNLLDTAPIEYD 118 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 LE KIDG +++ YE G+ + A+ RG+G GED++A I IP L P +E RG Sbjct: 119 LELKIDGLSLSLVYENGRLIQASTRGNGVIGEDITANAMTIKDIPH--QLPEPLSLEFRG 176 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248 E Y+ K F+ LN E A G+ +ANPRNAA+G LR+L+P R L F++ + + + Sbjct: 177 ECYMPKESFVKLNAEREANGQPVFANPRNAAAGSLRQLDPQVTARRNLATFMYYVPEYEK 236 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q E LQ+MR LGF VN + ++ + Y E + R L Y IDG+V KV++ Sbjct: 237 LGVTTQEEALQRMRDLGFNVNPHNQTVHSEKELAEYIGEYTAQRDQLAYGIDGIVEKVND 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ +LG + PRW I++KF ++ +T + +I +GRTG +TP A ++PV + G + Sbjct: 297 LHLQTKLGNTVKVPRWEIAYKFPPEEQATVVREIVWTVGRTGNVTPTAVMDPVQLAGTTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN DY++ +DIR+GD VL+ +AG++IP++ +I+ +R +++ + Sbjct: 357 SRASLHNPDYLR-----------EKDIRLGDTVLLHKAGDIIPEISRVIIEKRPVNSEEY 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP+C+S++V G++ A RC + C AQ E L HF SR+A NI+GLG Sbjct: 406 QIPTQCPVCESKLVH----LDGEV--ALRCVNPM-CPAQIKEGLAHFASRNAMNIDGLGP 458 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + + +R AD++ L Q + K FG+ S TNL SI+ R+ Sbjct: 459 KIIEQLWDKK----LVRDFADLYRLNEEQLLTLDK------FGEKSATNLLTSIDNSRHN 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+ER +F LGIRHVGA++AR +A+ + S ++ ++ + +D + V +G I Sbjct: 509 SVERLLFGLGIRHVGAKVARLIAEKFGS-------LDAVMKASAED---IAAVDTIGPTI 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++ ++ N + ++ LK+V ++ ++SSE +++V TG L R + Sbjct: 559 GDSVATYFANTQVHQLIQE-LKDVQVNMEYTAASHVDLSSEWNGQRVVLTGKLAMFTRGE 617 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+E++ + GA V+ +S+KT+++I G+ GSKL+KAQ LG+ I +E++F +++ N Sbjct: 618 AKEWLEEHGAQVTGSVSKKTNLLIAGEKAGSKLQKAQGLGIPIWDEQRFSQAMKEDN 674 >gi|70726048|ref|YP_252962.1| DNA ligase [Staphylococcus haemolyticus JCSC1435] gi|84028902|sp|Q4L7L9|DNLJ_STAHJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|68446772|dbj|BAE04356.1| DNA ligase [Staphylococcus haemolyticus JCSC1435] Length = 667 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 251/714 (35%), Positives = 378/714 (52%), Gaps = 82/714 (11%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + Y YY P + DSEYD L R I A P+ + P+ P ++G Sbjct: 10 ELHDLLNQYGYE---YYVQDNPSVPDSEYDKLLRELIDIEEAHPEF---KSPDSPTVRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE+ S KV H P LSL +N ++LR+F RI ++ S+ + E KIDG + Sbjct: 64 GEVQSSFEKVNHDTPMLSLGNAFNEQELRRFDQRI-----REQVGSVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y +G+FV RGDG +GED++ +R I IP L +N P EVRGE Y+ ++ F+ Sbjct: 119 SLKYVEGRFVQGLTRGDGTTGEDITENLRTIHAIP--LKINEPLSFEVRGEAYMPRSSFI 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E +P+ANPRNAA+G LR+L+P R L+ F++ + ++ A Q L Sbjct: 177 RLNEEKEKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFDATTQSGAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N+ + G++ Y + R L YDIDG+V KV++ Q ++G Sbjct: 237 DELDRLGFKTNHERMRVGDIEGVLEYIEKWTKQREQLSYDIDGIVIKVNDIEQQDEMGYT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T L DI++ IGRTG++TP A L+PV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTTLQDIELSIGRTGVVTPTAILDPVRVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I RDIR+GD V+VK+AG++IP+VV I R P+S P+ CP C Sbjct: 357 IH-----------ERDIRIGDSVVVKKAGDIIPEVVKSITERRPEGTLPYSMPTHCPSCD 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---QQL---- 491 +VR G++ A RC C AQ +E L HFVSR A NI+GLG QQL Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYHHN 458 Query: 492 ------DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 D F+ +ED D+ L+R G V NL +I Sbjct: 459 VINDVADIFYLTED---------DLLPLER--------------MGSKKVENLLKAIEDA 495 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + SLE +F LGIRH+G + ++ LA+ Y + + LI + +G Sbjct: 496 KANSLEHLLFGLGIRHLGVKASQVLAEKYETMDRLLEVTEE----------ELISIHDIG 545 Query: 606 DIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 D +AQ++V + +N +E L + V I + + +NK +V TG LQ++ Sbjct: 546 DKLAQSVVTYLENEDIKALIEKLKYKNVNMVYNGIKTSDIEGHPDFKNKTIVLTGKLQQL 605 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A ++ GA V++ +++KTD++I G++ GSKL KA++ G +I EEQF+ Sbjct: 606 TRKEASAWLELQGAKVTSSVTKKTDLVIAGEDAGSKLTKAEKFGTEIWTEEQFV 659 >gi|88703478|ref|ZP_01101194.1| DNA ligase [Congregibacter litoralis KT71] gi|88702192|gb|EAQ99295.1| DNA ligase [Congregibacter litoralis KT71] Length = 674 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 237/715 (33%), Positives = 386/715 (53%), Gaps = 64/715 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + SL +++ + YY P + D EYD R + A P+L D + P + Sbjct: 7 RNRVHSLREQLERWNHEYYILDSPTVPDQEYDGALRELQTLEEAHPEL---RDASSPTQR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI-FFTLEPKIDG 136 +G + V H +P LSL+ ++ E+L F+ R+ + D +S+ EPK+DG Sbjct: 64 VGAAPLSAFSSVEHPMPMLSLDNAFSDEELAAFLKRVV---DRLDVDSVPELVAEPKLDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 +++ Y +G AA RGDG GED++ +R I ++P ++ + P ++E+RGE+++ + Sbjct: 121 IAVSLIYREGLLERAATRGDGTYGEDITLNVRTIRSVPLKLRGASCPALVEIRGEIFMPR 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK-TSEIFAK 252 F A N+ G KP+ NPRNAA+G LR+L+ + IT R L F + G+ E + Sbjct: 181 AGFEAFNEHARRHGEKPFVNPRNAAAGSLRQLD-SKITARRPLEFCAYASGQHPEEGWPG 239 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 +++LQ G P++ + + + Y++ + R L +DIDG+VYKV++F+ Q Sbjct: 240 SHWDVLQLFASWGVPISRYAERLSGLDDCIDYFHRLGDERDALSFDIDGIVYKVNDFAAQ 299 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG AR+PRW I+ KF ++A T++ ++ Q+GRTG +TPVARLEPV +GG ++NAT Sbjct: 300 RELGFVARAPRWSIARKFPAQEAVTKVTGVEFQVGRTGAITPVARLEPVFVGGVTVSNAT 359 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I L ++ GD V+V+RAG+VIP+VV +I R + P P Sbjct: 360 LHNMDEIARL-----------NLHHGDSVVVRRAGDVIPQVVSVIAERREESSAPIDAPP 408 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+CQS V R T RCTGGL C+AQ ++HF SR A +I+GLG++ ++ Sbjct: 409 SCPVCQSPVERVAGEAT------LRCTGGLVCAAQLKAAVRHFASRRAMDIDGLGEKIVE 462 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +R AD+F L +Q + +E + G+ S L +I+ R +L R Sbjct: 463 QLVDRG----LVRDVADLFKL---EQGALLSLERM---GEKSAAKLLAAIDASRQTTLPR 512 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF+LG+R VG A +LA ++ + A + D L+ VP VG ++A+ + Sbjct: 513 FIFALGVREVGEATALALANHF----------GTLEALSGADLDDLLEVPDVGPVVAEHV 562 Query: 613 VEFYQNPRNICAVEALLK--------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 F++ N+ + LL+ V+P +G ++ + V +G L+ R Sbjct: 563 HGFFRADANLGVLRRLLEAGIAWPAVAVAPEVG-------GALDGQVWVVSGKLESQSRD 615 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ + LGA + +S KT +++ G GSKL KA+ LGV++++E +FL L+ Sbjct: 616 EAEAALRALGARTAKSVSGKTTVLLAGPGAGSKLSKAESLGVEVISEAEFLTRLE 670 >gi|73662196|ref|YP_300977.1| NAD-dependent DNA ligase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|84028903|sp|Q49YU8|DNLJ_STAS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|72494711|dbj|BAE18032.1| NAD-dependent DNA ligase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 667 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 242/701 (34%), Positives = 388/701 (55%), Gaps = 56/701 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ R+ D P ++G Sbjct: 10 ELHRLLNQYSYE---YYVKDNPSVPDSEYDKLLHELIDIETQHPEY-RTAD--SPTVRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G + KV H P LSL +N EDLRKF RI + + ++ + E KIDG + Sbjct: 64 GSAQSTFEKVNHDTPMLSLGNAFNEEDLRKFDQRI-----RDNIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++YE G+FV RGDG +GED++ ++ I IP L +N EVRGE Y+ + F+ Sbjct: 119 SLKYENGRFVQGLTRGDGTTGEDITENLKTIHAIP--LKINESRTFEVRGEAYMPRKSFV 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+ A +P+ANPRNAA+G LR+L+ R L+ F++ + ++ A Q E L Sbjct: 177 NLNEAKAANEEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFTQFNADTQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N ++ T +++Y ++ R LPYDIDG+V KV+ Q+ LG Sbjct: 237 DELDQLGFKTNQERQRVQTIEEVMTYIDKWTKQRENLPYDIDGIVIKVNALEQQETLGFT 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW I++KF ++ T LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED Sbjct: 297 QKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAVLEPVRVAGTTVSRASLHNEDL 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR+GD V++K+AG++IP+V+ +++ R DA+ + PS CP C+ Sbjct: 357 IH-----------DKDIRIGDSVVIKKAGDIIPEVIKSVLDRRPDDAEIYHMPSHCPSCE 405 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +VR G++ A RC C AQ +E L HFVSR A NI+GLG + + +++E Sbjct: 406 HELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYENE 458 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I+ ADIF L + ++ G+ V NL ++I K ++ SLE+ +F LG Sbjct: 459 ----KIKDVADIFYLTKEDLLPLDRM------GEKKVDNLLNAIEKAKSNSLEQLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRH+G + ++ +A+ Y + + H ++ +L+ + VG +AQ++V + +N Sbjct: 509 IRHLGVKASQVIAEKYGTIDE--------LFHVTEE--ALMDIHDVGHKLAQSVVTYLEN 558 Query: 619 PRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++ L + + + E + ++K +V TG L ++ R++A ++ G Sbjct: 559 EDIRALIDKLKAKNVNMIYKGVKTTELEGHPDFKDKTIVLTGKLYQMTRNEASNWLALQG 618 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 A V+ +++ TD++I G++ GSKL KA++ G +I +EE F+ Sbjct: 619 AKVTNSVTKNTDLVIAGEDAGSKLAKAEKFGTEIWSEEAFV 659 >gi|159897339|ref|YP_001543586.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779] gi|254781348|sp|A9AXP4|DNLJ_HERA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|159890378|gb|ABX03458.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779] Length = 673 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 374/712 (52%), Gaps = 54/712 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQ +SL E++ ++ YY P++ D++YD+L AI +P+L P+ P Sbjct: 5 EQTVARAASLRDELNLYNHHYYTLDAPLVSDAQYDSLLNELRAIEAEYPEL---RTPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G KV H +P LSL +N +DL + R + + + +T+EPKI Sbjct: 62 TQRVGSAPLSKFPKVQHPVPMLSLGNAFNADDLAAWRRRAEQIIGTQ---PMSYTVEPKI 118 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGE 190 DG + + Y G F A RG+G GED++A +R I +P L +PE IEVRGE Sbjct: 119 DGLAVALTYINGVFSVGATRGNGEIGEDITANLRTIRDVPLRLQPIDGQALPERIEVRGE 178 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ F LN+ G K +ANPRNAA+G LR+L+ T +R L FF + +G S + Sbjct: 179 VYLPIESFNQLNERQAHAGEKVFANPRNAAAGSLRQLDSTITASRPLRFFAYAVGPFSGV 238 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 K Q + L +R GF VN R F ++ Y +E S R +L Y++DG+V K+++F Sbjct: 239 ELKSQAQTLDTLRTYGFSVNPDTRLFADFEAVIEYCHEWMSRRESLSYEVDGVVVKINDF 298 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++Q++LG R PRW I++KF ++ +T LL+I I +GRTG L P A LEPV++GG + Sbjct: 299 AMQRELGVVGRDPRWAIAYKFPAREETTTLLNIVINVGRTGKLIPNAVLEPVSLGGTTVQ 358 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 +A+LHN DYI RDIR+GDRV+VKRAG+VIP V+ IV R D + + Sbjct: 359 HASLHNADYII-----------SRDIRIGDRVVVKRAGDVIPYVIGPIVEARTGDERVWP 407 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C V + G V + C C A+ + ++H+VSR A +I G+G++ Sbjct: 408 APTHCPTCGQPV-----EQIGDEVDIY-CVNN-TCPARLIRSIEHWVSRGAMDIVGMGER 460 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 Q F + IP DI+ L + G+G+ V NL ++I + + Sbjct: 461 QASQFVEM---GLIKSIP-DIYRL------TVDSFGGREGYGERRVANLLNAIEESKRRP 510 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L+R I +LGI VG A LA+Y+ S AQ L + +G A Sbjct: 511 LDRVITALGINGVGTVAAADLARYFRSLPALAQATIE----------QLTAIEGIGGSTA 560 Query: 610 QAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 Q++V+F+ P N I + AL + PS + S + K V TGTL I R A Sbjct: 561 QSVVDFFNTPANQQLIAELLALGLKAEPS--EVAELQSDRLAGKSFVITGTLPGISREAA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 Q + G V +S+KTD ++ G+ GSKL KAQ LGVK+++ ++ LL Sbjct: 619 QALIEAHGGKVGGSVSKKTDYLLAGEAAGSKLTKAQSLGVKVLSMDELHALL 670 >gi|241662937|ref|YP_002981297.1| DNA ligase [Ralstonia pickettii 12D] gi|240864964|gb|ACS62625.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12D] Length = 813 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 240/680 (35%), Positives = 367/680 (53%), Gaps = 67/680 (9%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E++ + YY +P + D+EYD L R +A+ P+L + P+ P ++GG + Sbjct: 20 LRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPEL---KTPDSPTLRVGGAVL 76 Query: 84 LSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMIT 140 V H IP LS+ E R F + R D D + + E K DG I+ Sbjct: 77 PEFAAVRHVIPMLSIRTETDTTPNGARAFDASVRRELGLDDTDPPVEYAAELKFDGLAIS 136 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKND 197 +RYE+G V AA RGDG +GEDV+ IR I IP LS ++P+++EVRGEVY+ ++D Sbjct: 137 LRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHVPDVLEVRGEVYMRRDD 196 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAKGQ 254 F LN G K + NPRN A+G +R+L+P R L+FF +GLG+ + + Sbjct: 197 FEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEVAGWKGMPGTH 256 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ML ++ GFPV+N G+V ++ +++ R +LP+DIDG+VYKV+ +LQ++ Sbjct: 257 SSMLDVLQAFGFPVSNERAAVAGGEGLVRFHEAIRAKRDSLPFDIDGVVYKVNSLALQRE 316 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG R+R PRW ++HK+ ++A T + ID+Q+GRTG +TPVARL PV +GG +TNATLH Sbjct: 317 LGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITPVARLVPVFVGGVTVTNATLH 376 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER------------- 421 NED ++ +D+RVGD V+V+RAG+VIP+VV ++++ R Sbjct: 377 NEDEVR-----------RKDVRVGDTVIVRRAGDVIPEVVSVVLDRRPMDDVPGSDLFNP 425 Query: 422 --HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 P PF P CP+C S VVR+ G+ VA RC+GGL CSAQ+ E ++HF R Sbjct: 426 QQQPKYPPFELPKTCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAGRR 479 Query: 480 AFNIEGLGKQ------QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 +IEGLG++ +LD+ D + + + D ++RR + G + Sbjct: 480 MMDIEGLGERYIDNLVELDYVHGIAD-LYKLTL-EDFLEMKRRADERDGVTPETVSAGKI 537 Query: 534 SVT---NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + NL + I + L RF+F+LGIRHVG A++LA + S + ++ Sbjct: 538 ATKWAENLLEGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAMIRRAPAPLLLA 597 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIE 648 D VG +A+AI +F+ P+N A++ALL+ G H N ++E Sbjct: 598 LPD----------VGATVAEAIADFFAEPKNQQALDALLEAGVAPQGEHAPNAKLREKLE 647 Query: 649 NKKLVFTGTLQKIQRHKAQE 668 +L T + K+ +A++ Sbjct: 648 PAELYATLGVPKLTATRAKQ 667 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 49/74 (66%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +V TGTL + R +A+ + GA VS +S+KTD ++ G++ GSKL KA++L V Sbjct: 734 LAGKTVVLTGTLPNLTRDEAKAMLEAAGAKVSGSVSKKTDYVVAGEDAGSKLAKAEELNV 793 Query: 707 KIMNEEQFLFLLQQ 720 K+++E L LL++ Sbjct: 794 KVLDEAGMLALLKK 807 >gi|294102358|ref|YP_003554216.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261] gi|293617338|gb|ADE57492.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261] Length = 684 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 251/719 (34%), Positives = 401/719 (55%), Gaps = 49/719 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A + + +L +EI+ H YY P I D EYDAL R ++ AFP+ +DP+ P Sbjct: 5 EALQRIEALREEINRHAHLYYVLDTPEIADHEYDALFRELASLEEAFPEF---DDPDSPT 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +++GG KV H P LSL+ + E++ F R++ ++ + E KID Sbjct: 62 HRVGGAPLDRFEKVIHESPLLSLDNALSKEEVWSFCDRVFSGLGL---GNLEYLCELKID 118 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++ YE G F+ A RGDG GEDV+A +R I ++P L + +EVRGEV +++ Sbjct: 119 GLAVSLIYEDGVFIRGATRGDGLVGEDVTANLRTIRSLPLRLREKVSGRMEVRGEVLMTR 178 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F ALN E G +ANPRNAA+G LR+L+ + +R L+ F++ + E + Q Sbjct: 179 EQFAALNQEREEGGELLFANPRNAAAGSLRQLDSSITASRKLSIFLYYVAHPQEHGLRTQ 238 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E+L ++ LGFPV + +T I ++ E + R +LPY DG+V K+++ + Sbjct: 239 QEVLHWLQHLGFPVQSAWGVCSTRQDIDAFIEEWREKRLSLPYSTDGVVLKINQVDFWED 298 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A++PRW I+ K+ ++ ++R+LDI++ +GRTG LTPVA LEPV++ G ++ A+LH Sbjct: 299 LGTTAKAPRWAIAFKYPPEEKTSRILDIEVSVGRTGTLTPVAHLEPVHLAGTVVRRASLH 358 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED I+ +DIR+ D+V+V++AGE+IP+VV ++ R + F P C Sbjct: 359 NEDEIR-----------RKDIRIKDKVVVRKAGEIIPEVVRVLTEGRDGNEVEFQMPDTC 407 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S V+R G++ A RC +C AQ E + HF SR A +I GLG + + Sbjct: 408 PACGSHVMR----IPGEV--ALRCPNRASCPAQLREGIAHFASRAAMDIRGLGDKLITQL 461 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + IR AD++TL+R S ++ G+ S +NL ++++ +N L I Sbjct: 462 VDRQ----LIRNMADLYTLKREDLLSLDRM------GEKSASNLLEALSVSKNRFLSNLI 511 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +LGIR VG ++A LA + S + ++ ++ LS I VG IA +I Sbjct: 512 TALGIRLVGKKVAEILADRFHSL--------DALSSAQEEGLSSIDG--VGPKIAASIKA 561 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ + N + + LK+ + EK++SS +E+++ VFTG LQ + R +A+ V Sbjct: 562 FFDDEANKEMI-SRLKDAGVRV-VEEKSMSSVEGPLEDQRFVFTGELQSMSRGEAEALVK 619 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730 LG S+ +S+KT I++ G GSKL+KA++LG+ I+NEE+FL +++ Y H D Sbjct: 620 NLGGASSSSVSKKTSIVVAGPGAGSKLQKARELGITIINEEEFLQMIRPYERVFSKHTD 678 >gi|170016835|ref|YP_001727754.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20] gi|254781358|sp|B1MXQ8|DNLJ_LEUCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169803692|gb|ACA82310.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20] Length = 681 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 248/721 (34%), Positives = 396/721 (54%), Gaps = 63/721 (8%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + P+ L+ + A++E+++L++ ++ + YY+ P++ D YDA R + FP Sbjct: 4 EFTPVNNLTTQMAQQEIATLQKRLTDYGVAYYEEDAPLVEDYIYDAFYARLVLLEAQFPQ 63 Query: 65 LARSEDPNGPLNKIGG-EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 P+ P +GG ++ L KV H P LSL ++++E+L+++ R + + + Sbjct: 64 FVT---PDSPTQNVGGAKVKSGLAKVVHPAPMLSLGDVFSLEELQEWDERTTKTLGFQSE 120 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + LE KIDG + + Y GK V A+ RG+G GEDV+A ++ I +IP+ L+ P Sbjct: 121 ----YNLELKIDGLAVALTYVDGKLVQASTRGNGSIGEDVTANVKTIRSIPQTLTE--PI 174 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVH 241 IEVRGE+Y+ K+ F LN + A G +P+ANPRNAA+G LR+LN IT R L+ FV+ Sbjct: 175 TIEVRGEIYMPKSSFATLNKQREADGLEPFANPRNAAAGSLRQLN-VAITKKRELSAFVY 233 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 I Q L++ LG P ++ R T I +Y E S R L Y IDG Sbjct: 234 YTADPDAIGVTTQSGALERFAALGLPTDDHNRVIATMADIDAYIAEYTSQRERLAYGIDG 293 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KV++ Q LG + PRW I++KF ++A T + DI+ +GRTG +TP A ++PV Sbjct: 294 VVVKVNQLDNQLDLGHTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAVMDPV 353 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G + A+LHN DY+ +DIR+GD V + +AG++IP++ +++ ER Sbjct: 354 QLAGTTVQRASLHNPDYLN-----------AKDIRIGDTVTLHKAGDIIPEIGQVLLAER 402 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + Q + P+FCP C S +V L+ + A RC C AQ E+L HF SR+A Sbjct: 403 PANNQVYDIPTFCPACHSELVH-LDGEV-----ALRCINPF-CVAQIQEKLTHFASRNAM 455 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI+G+G + + K A I+ A I+ LQ Q S K F + SVTNL + Sbjct: 456 NIDGMGPRVVSQLLK----ANYIQDVASIYRLQETQLLSLDK------FKEKSVTNLLSA 505 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I ++ SLER +F LGIR VGA+ AR +A+ + + Q A + + + + Sbjct: 506 ITTSKSNSLERLLFGLGIRMVGAKAARLIAEKFKTLQAIA----------DASVIDIASI 555 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-------KKLVF 654 +G+ IA ++V++++ P + LL E+ + G ++ +S I + KK+V Sbjct: 556 AGIGETIALSVVQYFKTPE----AKQLLIELQEA-GVNQTYLSDVIVDETSFFYGKKIVL 610 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG L+K R +A +++ GA V+ +S KTD++I G++ GSKL+KA LGV + +E+ F Sbjct: 611 TGKLEKGSRTEATKWLQDHGAQVTGSVSAKTDLLIAGEDAGSKLDKANALGVTVWDEQAF 670 Query: 715 L 715 + Sbjct: 671 I 671 >gi|55379625|ref|YP_137475.1| NAD-dependent DNA ligase LigA [Haloarcula marismortui ATCC 43049] gi|74516349|sp|Q5UY84|DNLJ_HALMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|55232350|gb|AAV47769.1| DNA ligase [Haloarcula marismortui ATCC 43049] Length = 691 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 243/713 (34%), Positives = 374/713 (52%), Gaps = 53/713 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E + E AR++ L + + YHD YY + P+I D YDAL R + AF + Sbjct: 23 VEDVDAETAREQADQLREALRYHDYRYYVENDPVIGDRAYDALFSRLQRLESAF-----N 77 Query: 69 EDPNG-PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 D +G P ++GGE L V H S+++ D+R+F +R+ D + Sbjct: 78 LDTDGSPTQRVGGEPLDELPDVEHVARMGSIDQGGEEADVREFDSRVRNGL----DGDVQ 133 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + EPK DG + I YE G + AA RGDG GEDV+ +R I ++P+ L + P+ + V Sbjct: 134 YFCEPKFDGLSVEIVYEDGVYQRAATRGDGEVGEDVTENVRTISSVPQRLRGDYPDFLAV 193 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVYI ++ F N E + G P+ANPRNAA+G LR+L+P+ R L+ F G+ Sbjct: 194 RGEVYIPRDAFTTFNRERVERGEDPFANPRNAAAGTLRQLDPSVTAERPLSIFFFGVLDA 253 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S F + E+ ++ G V + + + Y NE + R L Y+IDG+V KV Sbjct: 254 SVDF-ESHSELHERFPEWGLRVCDRTAVVDDIDAAIDYRNEQQQARDDLDYEIDGVVIKV 312 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ LG AR+PRW ++KF ++ T + DI +Q+GRTG LTPVA ++PV +GG Sbjct: 313 DDMDACDDLGSTARAPRWAFAYKFPARKEETTVRDIVVQVGRTGRLTPVALMDPVEVGGV 372 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ A+LHN I L + VGDRV +KRAG+VIP VV+++ ++ Sbjct: 373 TVSRASLHNPSLIADL-----------GVDVGDRVRIKRAGDVIPDVVEVLDDDGD---G 418 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F FP CP C S V D G + CTGGL C AQ+ ++H+ SRDA +IEG+ Sbjct: 419 HFEFPETCPACDSPVEHD-----GPMAF---CTGGLTCPAQRERSVEHYASRDALDIEGV 470 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ + A + PAD++ L + + + G+G+ S NL D ++ R Sbjct: 471 GEKAVQQLLD----AGLVSDPADLYDL------TVEDLTGLEGWGETSARNLVDGMDSAR 520 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L F+ +LGI VG AR+LA+ + +++ + A + D + VP VG Sbjct: 521 EPPLADFLVALGIPEVGTVTARNLAQEFGTFEAI------LDAADEGDTDAFEAVPDVGQ 574 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +A++IVEF++ N ++ LL V P E+ ++ + VFTG+L R +A Sbjct: 575 TVARSIVEFFEGEGNRAVIDRLLDHVEPQAA--EETDGDALDGQTFVFTGSLDGYTRGEA 632 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLL 718 QE V + ++ +S TD +++GDNPG K + A V+ + E++F LL Sbjct: 633 QELVERNDGSATSSVSGNTDYLVLGDNPGQRKQDDAAAHDVETLTEDEFEELL 685 >gi|94986686|ref|YP_594619.1| NAD-dependent DNA ligase [Lawsonia intracellularis PHE/MN1-00] gi|123385090|sp|Q1MRS8|DNLJ_LAWIP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94730935|emb|CAJ54298.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Lawsonia intracellularis PHE/MN1-00] Length = 682 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 250/722 (34%), Positives = 397/722 (54%), Gaps = 66/722 (9%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P +L ++ ++ + L + I++H+ YY P I DSEYD + + + FP L Sbjct: 6 PQYSLPSKKEKQRVRELRKFINHHNYLYYTLDDPEISDSEYDKAFQELLTLENTFPSLKT 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI--------YRFWQ 119 + N P K+G + L + H SL+ +++ ++ F+ R+ + FW Sbjct: 66 N---NSPTQKVGNNILKKLEEQPHRQRMYSLDNVFSNDEWEGFLKRLANALPEVPFSFW- 121 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-- 177 +PK+DG + + YEKG+ A RGDG GE V+ +R I IP+ L Sbjct: 122 ----------CDPKMDGLALELIYEKGQLTSALTRGDGDIGEVVTEAVRTISNIPKRLKH 171 Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYL 236 S+N PE++E+RGEV IS+ DF LN E +K +ANPRNAASG +R+L+PT +R L Sbjct: 172 SINAPELLEIRGEVVISRADFKKLNKEQEKKKKKLFANPRNAASGSVRQLDPTITASRPL 231 Query: 237 NFFVHGLG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 F +G+G + S + +E++ ++ GF + + + SYY +++ R + Sbjct: 232 RFLAYGIGEIQPSSLKWNTYHELMSYLKEYGFETPPKGKLCISSTEVQSYYTRLQAQRYS 291 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L Y+IDG+V K+D+ Q++LG +R+PR+ I+ KF Q TRLL I IQ+GRTG+LTP Sbjct: 292 LRYEIDGIVMKLDDIQSQEKLGYTSRAPRFAIAWKFPATQVQTRLLQIHIQVGRTGVLTP 351 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA LEP+N+GGA I+ ATLHNED IK +DIR GD V+V+RAG+VIP++V Sbjct: 352 VAELEPINVGGATISRATLHNEDEIK-----------NKDIRPGDMVIVQRAGDVIPEIV 400 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 I+++R ++PF FP CP+C +V R N A RC L+C A +L+ + + Sbjct: 401 SPILSDRSAKSKPFVFPKICPVCHEKVYRINNE------VAWRCI-NLSCPAIRLQSIIY 453 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVS+ NI+G+G++ ++ S I+ PAD+FTL + ++ L + Sbjct: 454 FVSKSGLNIQGIGQRLIELLVTSG----CIKTPADLFTLTTADLLTYKRMGAKLAAKTIQ 509 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 +L ++ +SL R I +LGIRHVG + AR LA ++ +++ + + + +D Sbjct: 510 ALSL-----AKQTMSLHRLICALGIRHVGEQTARILASSFI-------DLDALSSASLED 557 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLV 653 L ++ +G +A +I F++N NI + + + P ++ KKL+ Sbjct: 558 ---LQQLSEIGPEVASSIQAFFKNKANIQMINQFREMNIWPIQQVNDTTTKGFFTGKKLL 614 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTGTL++ R + + + GA+V +S K D +I G NPGSKL KAQ+L + I++E Sbjct: 615 FTGTLER-PRAEMKRLAEEAGAIVMTGISHKLDYVIAGKNPGSKLNKAQELHISILDEPT 673 Query: 714 FL 715 FL Sbjct: 674 FL 675 >gi|329942957|ref|ZP_08291736.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10] gi|332287548|ref|YP_004422449.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC] gi|313848123|emb|CBY17124.1| putative DNA ligase [Chlamydophila psittaci RD1] gi|325506604|gb|ADZ18242.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC] gi|328815217|gb|EGF85206.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10] gi|328914798|gb|AEB55631.1| DNA ligase, NAD-dependent [Chlamydophila psittaci 6BC] Length = 660 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 243/705 (34%), Positives = 397/705 (56%), Gaps = 54/705 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +R++ SL ++I D YY P I D +YD R+ +I P+ P+ Sbjct: 6 SREQYLSLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLWSPS---M 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G + S V H+ P LS+ + +E+L +F +R+ +K + +TLE KIDG Sbjct: 63 RLGDRASGSFPIVAHAHPMLSIANAYTLEELYEFFSRM----EKALGYTPKYTLEIKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + +RYE+ + A RG+G GED++A IR I T+P LS PE +EVRGEV+ S+ Sbjct: 119 IAVALRYEQRVLLQALSRGNGRKGEDITANIRTIRTLPLRLSKEAPEFLEVRGEVFFSRA 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N + +ANPRNAA G L+ L+ + + N + G +E + YE Sbjct: 179 TFRQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQR-NLEISIYGSLAEENKRSHYE 237 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L R GFPV RQ T +V+ +E++++R LP +IDG+V KVD+ QK LG Sbjct: 238 NLLLCREWGFPVLGQPRQCQTIDEVVASLHEIEALRDQLPMEIDGVVIKVDDIEDQKVLG 297 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+ ++ A+L+NE Sbjct: 298 MTAKHYRWALAYKYAPERAETILEDILVQVGRTGVLTPVAKLRPVVLSGSRVSRASLYNE 357 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +DIR+GD V V++ GE+IP+VV + + +R +QP+ P +CP+ Sbjct: 358 DEIE-----------RKDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGSQPWVMPEYCPV 406 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C +V R+ + + RCT L CSA +E+++ F RDA +I+ LG++ + F Sbjct: 407 CHGKVTRESDK------VSVRCTNPL-CSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFD 459 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I DIF Q + + ++ GF D S+ N+ SI K +++ L+RF+ + Sbjct: 460 ----LGCIHRRCDIF------QITEEDLRHVPGFKDKSIRNVLKSIEKAKSVPLDRFLTA 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +VG A +LA+++LS + ++++ + DD L V +GD +A++IV ++ Sbjct: 510 LGIPYVGIGGANALAQHFLS-------LESVMSASLDD---LKSVEGIGDKVAESIVAYF 559 Query: 617 QNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 P + ++ +L S+G H + SS K V TG+L+K+ R +A+ Y+ Sbjct: 560 NQPEHREEIQIML-----SLGVHVLPYRRESSSCLGKTFVITGSLEKLTRSEAETYIRNC 614 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G V + +S+ TD ++VG +PGSKL+KAQ+L + I++E++ L +L Sbjct: 615 GGKVGSSVSKNTDYLVVGKDPGSKLQKAQELEIPILSEDELLKIL 659 >gi|229917963|ref|YP_002886609.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b] gi|229469392|gb|ACQ71164.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b] Length = 664 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 250/712 (35%), Positives = 394/712 (55%), Gaps = 66/712 (9%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L Q ++ + YY +P + DSEYD L I +P+L P+ P ++GG Sbjct: 7 VEELRQTLNQYGYEYYVLDRPSVPDSEYDRLMNELIQIETDYPEL---RTPDSPTQRVGG 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + KVTH P LSL +++ E+L +++ RI +K + F E K DG ++ Sbjct: 64 APLDAFVKVTHDTPMLSLGNVFSKEELVEWVERI----EKDLGYTPTFVAELKFDGLAVS 119 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 ++YE G+ V A RGDG +GED++ ++ I +IP L LN EVRGE Y+ K F Sbjct: 120 LKYENGRLVRGATRGDGTTGEDITQNLKTIRSIP--LRLNEDVTFEVRGEAYMPKRSFEQ 177 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 LNDE +G +ANPRNAA+G LR+L+ +R L FF +GL ++ A E L Sbjct: 178 LNDERERIGEPLFANPRNAAAGSLRQLDSKIAASRNLAFFAYGLVSQDDLVAS-HDESLD 236 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 ++ LG V+ T + Y + RS LPY+IDG+V KV + Q+QLG A Sbjct: 237 YLKRLGVAVSGDYTTCQTADELWDYIETYVTKRSDLPYEIDGIVIKVAGYEEQEQLGFTA 296 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 +SPRW +++KF ++ T + D+D +GRTG +TP AR PV++ G+ +T ATLHNED+I Sbjct: 297 KSPRWAVAYKFPAEEVVTTIEDVDFSVGRTGKVTPRARFAPVSVAGSTVTYATLHNEDFI 356 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 K +D+ +GDRV++K+AG+VIP VV + +ER + + FP+ CP C S Sbjct: 357 K-----------EKDLHIGDRVVIKKAGDVIPAVVSALASERSGEERVIEFPTHCPACGS 405 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 ++R G+ A HRC C AQ LE L HFVSR A NI+GLG++ + + Sbjct: 406 ELIR----LEGE--ADHRCVNP-ECPAQLLEGLIHFVSRQAMNIDGLGEKVITQLHE--- 455 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERFIFS 556 A + AD++ L R +++LG G+ SVTNL +I + + SLER +F+ Sbjct: 456 -AGLVHNVADLYRLDR---------DDLLGLERMGETSVTNLLSAIEQSKQNSLERVLFA 505 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG + A +A+ + + ++ IIA ++ L + +G +A++IV ++ Sbjct: 506 LGIRLVGQKAASLIAERF-------ETMDAIIAATVEE---LTSIDGIGTKMAESIVLYF 555 Query: 617 QNPRNICAVEALLKEVSPS----IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEY 669 + P L+KE++ S + K ++E + K +V TG L ++ R +A + Sbjct: 556 EKPE----ARELVKELAESGVNLSFKGMKRPTTEGAPLSGKTVVLTGKLHEMTRGEAGKQ 611 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + LGA V+ +S+ TD+++ G+ GSKL KA+ LG+++ +E + L L+++ Sbjct: 612 LELLGASVTGSVSKNTDLLVAGEKAGSKLAKAESLGIEVWDEAKLLDFLKEH 663 >gi|262276888|ref|ZP_06054681.1| DNA ligase, NAD-dependent [alpha proteobacterium HIMB114] gi|262223991|gb|EEY74450.1| DNA ligase, NAD-dependent [alpha proteobacterium HIMB114] Length = 672 Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust. Identities = 250/705 (35%), Positives = 397/705 (56%), Gaps = 45/705 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KE + ++ ++ YY + P I D+ YD LK++ I + + SE + I Sbjct: 6 KEYQEKKNKLFEYNKFYYDKNSPKIDDATYDRLKKQL--IFYEKTNQI-SEKEKKVSDTI 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + KV H+ LSLE ++ ED+ +F +I + K + EPKIDG Sbjct: 63 GFSPSKKFSKVKHAESMLSLENAFDQEDIFEFYKKINNYLNFKSSHREELFAEPKIDGIS 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++Y G + RGDG GED++ +R I +P R+ N E+I VRGEVYI K++ Sbjct: 123 ASLKYVNGYLIQGLSRGDGQFGEDITENLRTIDDVPKRLKKFNSGELI-VRGEVYIPKSE 181 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYE 256 F ++D+ +ANPRNAASG LR+ N T+ + L FF +G + Q + Sbjct: 182 FKNISDK--------FANPRNAASGSLRQKNATNTAKIPLRFFAYGTIFMNHNLQSKQSK 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L ++ GF +N + + Y ++++ RS L YDIDG+VYKVD F LQ++LG Sbjct: 234 FLDFLKLEGFKINPLGIIIKDEKDLFANYTKIENKRSELDYDIDGIVYKVDNFKLQQRLG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 SPRW I+HKF+ ++ +++ +I+IQ+GRTG LTPVA++ P+NIGG +++NATLHNE Sbjct: 294 NLTNSPRWAIAHKFSAERGISKIKNIEIQVGRTGALTPVAKINPINIGGVIVSNATLHNE 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +DIR+GD ++V+RAG+VIP+VV++ ++R ++ F FP CP Sbjct: 354 DEIE-----------RKDIRIGDTIVVQRAGDVIPQVVEVDKSKRDKSSKKFIFPKKCP- 401 Query: 437 CQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C +++ N T K A RC G C+ E++KH+VS+DA NIEGLGK+ ++ F+ Sbjct: 402 CGFETIKEFNKLTKKYDAVRRCPDKGYECNLITKEKIKHYVSKDAMNIEGLGKKVVENFW 461 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 +++P DI+ L + KI + G+G +S NL SINK + ISLE+FI+ Sbjct: 462 DLN----LVKLPHDIYKL------NFEKISQLEGWGKISANNLKKSINKTKKISLEKFIY 511 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 SLGIRH+G E A+ LAK++ S + F + ++ N+ + L+ + +G+ ++ F Sbjct: 512 SLGIRHIGQENAKILAKFFQSIKIFKK----LVFEKNNLFKDLLELDGIGETQINSLRNF 567 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + N N E L+K + SI + NK +FTG ++K+ R +A++ V G Sbjct: 568 FSNNTNKKVFEELIKNL--SILDFIIQSKGKFINKTFMFTGGMEKMSRSEAKQIVENEGG 625 Query: 676 VVSAILSRKTDIIIVGDNPGS--KLEKAQQLGVKIMNEEQFLFLL 718 V LS+K D ++ GD+ + K+ +A+ LG KI+ E+ + L+ Sbjct: 626 KVLGSLSKKLDYLVAGDSKPTLKKINQAKDLGTKILKEKDWYKLI 670 >gi|227509971|ref|ZP_03940020.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190577|gb|EEI70644.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 675 Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust. Identities = 247/717 (34%), Positives = 386/717 (53%), Gaps = 59/717 (8%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + E ++ +QA L ++++ D YY Y P + DS YD ++ + FP + Sbjct: 1 MAFEDMTEQQAESAAQELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIV 60 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P K+G KV H IP LSL +++IE+L+ F R+ D S+ Sbjct: 61 T---PDSPTQKVGDHTLPGFTKVPHEIPMLSLGDVFSIEELKAFADRL------SDSESV 111 Query: 127 FF--TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 F E KIDG I++RYE G V A RG+G GED++ ++ I +IP+ LS P Sbjct: 112 PFEYNCELKIDGLAISLRYEDGILVQGATRGNGQIGEDITRNLKTIKSIPQRLSR--PIN 169 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 IEVRGE Y+ K F+ LN + G P+ANPRNAA+G LR+L+ R L+ F++ + Sbjct: 170 IEVRGECYMPKESFVELNQQRQVEGVAPFANPRNAAAGSLRQLDSRVTAHRKLSTFMYNV 229 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 ++ + Q ML++++ LGF +N + A+ I Y R TL Y IDG+V Sbjct: 230 ANYDDLESDTQSGMLEELKKLGFTINADYQVAHNMDDIDQYVERYTKQRDTLAYGIDGIV 289 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ LQ+ LG + PRW I++KF ++A T + DI+ +GRTG++TP A ++ V + Sbjct: 290 IKVNSLPLQRSLGATVKVPRWAIAYKFPPEEAETIVRDIEWTVGRTGVVTPTAVMDEVTL 349 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ A+LHN DY++ +DIR+ D V + +AG++IP++ + ++R Sbjct: 350 AGTTVSRASLHNPDYLR-----------EKDIRISDTVKLHKAGDIIPEISTYVKDKRQV 398 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D+QP+ P+ CP C S +V L+ + A RC C AQ E L HF SRDA NI Sbjct: 399 DSQPYEIPTKCPSCDSELVH-LDEE-----VALRCINP-QCPAQLKEGLTHFASRDAMNI 451 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG + + FK + A ++ L Q + K FG+ S NL +I Sbjct: 452 DGLGPKIIAQLFKKH----MLTDVAGLYELTFDQLMTLDK------FGEKSAGNLLTAIA 501 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 RN S ER +F LGIRHVGA+ AR +A+ + + IA + Sbjct: 502 NSRNNSCERLLFGLGIRHVGAKAARLIAQRFKNIDKVMDATAQEIAE----------IDT 551 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNV---SSEIENKKLVFTGT 657 +G IIA ++V ++ P++ + + LK+V + +G ++++ S K+LV TG Sbjct: 552 MGMIIADSVVTYFSMPQSKELI-SQLKQVGVNMDYLGATDEDLKESDSVFNGKRLVLTGK 610 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LQ I R +A ++ GA VS +S+KTDI++VG++PGSK +KA+ LG+++ +E +F Sbjct: 611 LQHITRPEATRWLENHGAKVSGSVSKKTDIVVVGEDPGSKYDKARNLGIEVWDENRF 667 >gi|224476961|ref|YP_002634567.1| DNA ligase [Staphylococcus carnosus subsp. carnosus TM300] gi|254781419|sp|B9DMU3|DNLJ_STACT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222421568|emb|CAL28382.1| DNA ligase [Staphylococcus carnosus subsp. carnosus TM300] Length = 668 Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust. Identities = 235/705 (33%), Positives = 384/705 (54%), Gaps = 57/705 (8%) Query: 20 ELSSLEQEISY----HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 EL++ QE+ + + YY P + DSEYD L R I +A P+ ++ED P Sbjct: 3 ELATRVQELHHLLNKYSHEYYVQDNPSVPDSEYDKLLRELIDIENAHPEY-KTED--SPT 59 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE + KV H P LSL +N E+LR+F R+ ++ + + E KID Sbjct: 60 VRVGGEAQATFNKVRHDTPMLSLGNAFNEEELRRFDARV-----REKAGKVEYMCELKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G ++++YE G+FV RGDG GED++A +R I IP L +N P EVRGE Y+ K Sbjct: 115 GLAVSLKYENGRFVQGLTRGDGTIGEDITANLRTIRAIP--LRINKPLTFEVRGEAYMPK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN + G + +ANPRNAA+G LR+L+ R L+ F++ + + A+ Q Sbjct: 173 KSFEHLNQQKEEAGEQAFANPRNAAAGSLRQLDSKLAAKRRLSIFLYSVNDFTNFHAESQ 232 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L ++ LGF N ++ + G++ Y + R LPYDIDG+V KV++ Q++ Sbjct: 233 SEALDELDELGFKTNQNRKRVSDIDGVLEYIKYWTAHREELPYDIDGIVIKVNDLEEQEE 292 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SPRW I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LH Sbjct: 293 LGYTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAVLEPVRVAGTTVSRASLH 352 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED I +DIR+GD V++K+AG++IP+V+ + + R +P+ P+ C Sbjct: 353 NEDLIH-----------EKDIRIGDSVVIKKAGDIIPEVIRSLPDRRPEGTEPYHMPTHC 401 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C +VR L+ + A RC C AQ +E + HFVSR A NI+GLG + + Sbjct: 402 PSCGHELVR-LDGE-----VALRCINP-KCPAQLVEGMIHFVSRQAMNIDGLGTKIIMQL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 +++E I+ D++ L + ++ G+ NL ++I + SLE + Sbjct: 455 YENE----IIKDVGDLYYLTKDDLLPLERM------GEKKADNLLNAIEASKKNSLEHLL 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIRH+G + ++ +A+ + + + L+ + +GD +A +++ Sbjct: 505 FGLGIRHLGVKASQVIAERFETMDRLFKVTEE----------ELLEIHDIGDKLATSLIT 554 Query: 615 FYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + N I +E L ++ I E SE K +V TG L + R +A +++ Sbjct: 555 YLNNKDIIALIEKLRRKNVNMTYEGIKTSEIQTDSEFNGKTVVLTGKLHNMTRTEASKWL 614 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GA ++ +++ TD++I G++ GSKL KA++LG ++ +E++F+ Sbjct: 615 EAQGAKTTSSVTKNTDLVIAGEDAGSKLTKAEKLGTEVWSEDEFI 659 >gi|303247047|ref|ZP_07333322.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ] gi|302491473|gb|EFL51358.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ] Length = 693 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 249/724 (34%), Positives = 381/724 (52%), Gaps = 59/724 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A L L +I HD YY P+I D+ YDAL R + A P+L +DPN P Sbjct: 7 AAARLRELRAQIHEHDYRYYVLDDPVIEDAAYDALYRELRKLETAHPEL---DDPNSPTK 63 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFTLEPKID 135 ++GG + + H + SL+ + E+ R F+TR +++ + F ++PK D Sbjct: 64 RVGGTVLPAFVSKPHRLAMYSLDNAMSEEEWRDFVTRAANKLEREGQPFTRTFWVDPKFD 123 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-------SLNIPEIIEVR 188 G + I YE G + A RGDG GEDV+ +R + +P L +L +P ++EVR Sbjct: 124 GLALEIIYENGVYAGALTRGDGEVGEDVTENVRTVKNVPLDLRPHAVRANLPVPALLEVR 183 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV +++ DF LN+ G K +ANPRNAA+G +R+L+ +R L FF + +G Sbjct: 184 GEVVMTRQDFYELNERQREQGGKIFANPRNAAAGSVRQLDSKISASRPLTFFAYAIGAQD 243 Query: 248 EIFAKGQYE----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 A + ++ + LG PV + A + Y+ M R LP++IDG+V Sbjct: 244 WAGADPGWTTHSGIMAGLGKLGLPVAREGKVAGE-DAVYPYFKTMGVRRPDLPFEIDGVV 302 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVD + Q+ LG R+PR+ I+ KF +A T L I++Q+GRTG+LTPVA LEPV++ Sbjct: 303 VKVDSLADQEALGFTGRAPRFAIALKFPAHEAETVLKRIEVQVGRTGVLTPVAILEPVSL 362 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ ATLHNED IK +D+R GD V+V+RAG+VIP+VV ++ +R Sbjct: 363 AGVTVSRATLHNEDEIK-----------AKDLRAGDTVVVRRAGDVIPEVVRVVPEKRPA 411 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA+PF FP CP C S VR G+ AA RC LAC A + +FVS+ +I Sbjct: 412 DAEPFPFPHICPSCHSPAVR----APGE--AAWRCV-NLACPAMLRRGIAYFVSKSGLDI 464 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EG+G + + ++ PAD+F L ++ + S N ++ Sbjct: 465 EGIGNKWVKTLIDKG----MVKTPADLFNLTEMDLIPMERM------AEKSAANFVAAVE 514 Query: 544 K-RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K ++N +L + I +LG+R VG AR+LA+++ ++++ + A ++D L +P Sbjct: 515 KAQQNATLAKLIAALGMRQVGTRTARTLAEHF-------RDLDGLAAATSED---LTALP 564 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQ 659 +G +A +I EF+ N N +E + + + V E + KK +FTGTL Sbjct: 565 DIGPEVAGSIREFFDNAANRELIERFRQIGLWPVSEPKTAVPPEATPLGGKKFLFTGTLP 624 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R KA+ V G V +S+K D ++VG +PGSKL KAQ LG+ I++ E F LL Sbjct: 625 GMSREKAEALVEAAGGRVMKSISKKLDYLVVGADPGSKLAKAQSLGITILDAEAFQELLG 684 Query: 720 QYNT 723 + N Sbjct: 685 EENA 688 >gi|57234606|ref|YP_181338.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195] gi|123759715|sp|Q3Z8W1|DNLJ_DEHE1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|57225054|gb|AAW40111.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195] Length = 677 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 248/720 (34%), Positives = 378/720 (52%), Gaps = 65/720 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R E+ +L +EI+ H+ YY P I DSEYDAL RR + A P+L ++ P + Sbjct: 5 RTEIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELVTADSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136 +G E + V H P LSL ++ +L + R+ + N+ F EPK+DG Sbjct: 62 VGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYLRVKKLL----GNAAFQIDCEPKMDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + Y GKF A RGDG GE+++ +R I +IP + P + E+RGEVY+ K Sbjct: 118 LAVALTYRNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPPVFEIRGEVYLPKE 177 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQ 254 F LN E G +ANPRNAA+G LR+L+P+ R L+ F++ LG + + Sbjct: 178 GFAKLNRERADKGLSLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYAEDSLLPDSH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +++L+ LGF +N R NT YY EM R +LPY+ DG+V+KVD SLQ++ Sbjct: 238 WQILEYFSRLGFKINPRNRLVNTLEEAKEYYREMAENRDSLPYEADGVVFKVDSVSLQQK 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG+ R PRW I++KF +Q +T L I I +GRTG L P A LEPVN+GG ++ A+LH Sbjct: 298 LGDAGREPRWAIAYKFPAEQVTTLLRKIGISVGRTGTLNPYAILEPVNVGGVVVKQASLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF---- 430 NED ++R +DIR GD V+++RAGEVIP+VV ++ +R P+++PFS Sbjct: 358 NED---------DILR--KDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSMEETL 406 Query: 431 --PSF----CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P CP+C + R A H C ++C AQ +L+HFVSR +I Sbjct: 407 FNPKLSRPACPVCGGEIYRPAGE------AMHYC-ANVSCPAQFERQLEHFVSRGTMDIR 459 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + L E ++ +D++ L + + + G+ S N+ +I Sbjct: 460 GIG-ESLSVILAQEGLVKNV---SDLYYL------TAADLLKLPRMGEKSADNIIKAIAD 509 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 ++ L+R IF LGIRHVG E A L+ Y +I A L +P + Sbjct: 510 SKSRPLDRVIFGLGIRHVGNETAALLSSRY----------GDIWALAGAGLDELQTIPDI 559 Query: 605 GDIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 G IA +I ++ +NI + L +K S ++ S +E V TG L Sbjct: 560 GAKIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPSYKPLPLSGVE---FVVTGKLDS 616 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R +AQ+ + LG +++ T ++VG + GSKL KA+ +GVK ++E++F+ +L+Q Sbjct: 617 LSREEAQQKIRSLGGTAKDNVTKATRYLVVGADAGSKLAKARSMGVKELSEQEFINMLEQ 676 >gi|304415222|ref|ZP_07395930.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola LSR1] gi|304282928|gb|EFL91383.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola LSR1] Length = 674 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 240/707 (33%), Positives = 396/707 (56%), Gaps = 65/707 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 + +H+ Y+ P I D+EYD L + +P+L ++ P + G + L++F Sbjct: 15 LQHHEYQYHVLDNPEIPDAEYDRLMNELRELETQYPELICADSPTQRV----GAVPLNIF 70 Query: 88 -KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 +V H P LSL+ +++ + F R++ ++ + F EPK+DG +++ YEKG Sbjct: 71 EQVKHESPMLSLDNVFDEKSYLAFHQRLHNRLNLTEE--LAFCCEPKLDGVAVSLLYEKG 128 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205 + V AA RGDG GE+++A +R I TIP R+ +IP+ IE+RGEV++ F N+ Sbjct: 129 ELVRAATRGDGSIGENITANVRTIRTIPLRLRGDDIPQQIEIRGEVFMPLIGFAQFNEAA 188 Query: 206 -IAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEIFAKGQYEMLQKMR 262 +K ++NPRNAA+G LR+L+P R L+FF +G+G + + L + + Sbjct: 189 RHKAEKKFFSNPRNAAAGSLRQLDPRITAKRPLDFFCYGMGLLKGGALPQHHLQRLLQFK 248 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 G PV+N +++ I+++Y ++ R L +DIDG+V KVD+ SLQ++LG AR+P Sbjct: 249 AWGLPVSNQIKRCIGSDQIIAFYRHLEQQRDRLDFDIDGVVIKVDDLSLQERLGFSARAP 308 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 RW + KF ++ T++ ++ Q+GRTG +TPVARLEP+ + G +++NATLHN D IK L Sbjct: 309 RWATAFKFPAQEKMTQVRQVEFQVGRTGAITPVARLEPIQLAGVMVSNATLHNADEIKRL 368 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 D+ +GD V+++RAG+VIPK+V +++N R +AQ SFP CP+C S Sbjct: 369 -----------DLHIGDTVIIRRAGDVIPKIVSVVMNARPLEAQEVSFPLHCPVCGS--- 414 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 D+ G+ +A RC+G L C+AQ+ + LKHFVSR A +++G+G + ++ E Sbjct: 415 -DIERLEGETIA--RCSGALLCTAQRKKMLKHFVSRRALDVDGMGDKIIEQLVTKE---- 467 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKR-RNISLERFIFSLG 558 ++ PAD+F L +E ++G G S NL ++ KR + + Sbjct: 468 YVKHPADLFHL---------TVEKLMGLNRMGAKSAHNLIAALEKRNKRLXXXXXXXXXX 518 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 R VG A +LA ++ + + + D +L +V VG ++A ++ F Sbjct: 519 XREVGETTAANLAAHFRTLSHL----------RSADVETLQQVADVGVVVATHVINFLAQ 568 Query: 619 PRN---ICAVEALLKEVSP----SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N I A+EA++ P ++ N+ + +K +V TG+L + R A++ + Sbjct: 569 EHNQHVINALEAVIHWPEPEQIIAVAEESNNIFT---SKTIVLTGSLNSLSRENAKDRLV 625 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA VS +S+KTD++I G+ GSKL KAQ+LG+K++ E++ L LL Sbjct: 626 ALGAKVSNSVSKKTDLVIAGEGAGSKLIKAQELGIKVITEDEMLRLL 672 >gi|146307768|ref|YP_001188233.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina ymp] gi|190359273|sp|A4XVY5|DNLJ_PSEMY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145575969|gb|ABP85501.1| DNA ligase, NAD-dependent [Pseudomonas mendocina ymp] Length = 786 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 231/659 (35%), Positives = 354/659 (53%), Gaps = 50/659 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + +S L E+ H+ YY +P + D+EYD L R A+ P+L P P Sbjct: 4 AAQRISELRNELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELV---TPESPTQ 60 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTL 130 ++GGE + +V H +P LSL + +DLR F + + + ++ Sbjct: 61 RVGGEALSAFGEVRHEVPMLSLGNAFEEDDLRAFDRSVQSGLGLAGGDLFGGGAEVEYSC 120 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189 EPK+DG +++RYE G+ V A RGDG +GED+SA +R I +P ++ P+++EVRG Sbjct: 121 EPKLDGLAVSLRYENGQLVRGATRGDGSTGEDISANVRTIRNVPLKLQGEGWPQVLEVRG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV++ K F LN G K +ANPRNAA+G LR+L+P +R L F +G+G+ S Sbjct: 181 EVFMPKAGFEELNARQAEAGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVGQVSG 240 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q MLQ+++ G P++ ++ A + YY ++ R +L YDIDG+V+KV+ Sbjct: 241 ELPGTQVAMLQQLKAWGIPISRELKLAKGVEACLDYYRDIGQRRMSLAYDIDGVVFKVNN 300 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+QLG RAR+P W I+HKF ++ T LLD++ Q+GRTG +TPVARL+PV + G ++ Sbjct: 301 IEDQQQLGFRARTPHWAIAHKFPAQEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMV 360 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 NATLHN D + L + +GD V+++RAG+VIP+V+ ++ R DA+P Sbjct: 361 ANATLHNMDEVARL-----------GVMIGDTVIIRRAGDVIPQVMAVVPERRPADARPV 409 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAA------HRCTGGLACSAQQLERLKHFVSRDAFN 482 P CP+C S V R K K A+ +RC G L+C AQ + + HFVSR A + Sbjct: 410 HIPEQCPVCGSAVERTQLIKRSKGKASVSEGSVYRCVGRLSCQAQLKQAIIHFVSRRAMD 469 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG + ++ + I PAD++ L Q I + GF +VS L +I Sbjct: 470 IEGLGDKTIEQLVDEK----LIGSPADLYKLTYEQ------IIGLEGFAEVSSNKLLAAI 519 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + SL RFI++LGI VG E A+ LA+ S + Q + ++ + +P Sbjct: 520 ENSKRPSLARFIYALGIPDVGEETAKVLARSLASLERVRQALPEVLTY----------LP 569 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G +A I F+++ N + ALL E + + E +S+E + G L K+ Sbjct: 570 DIGLEVAHEIHSFFEDAHNQQVISALLGECGLEL-QDEGELSAEF-SAVATLGGMLDKL 626 Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 14/155 (9%) Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ---NPRNICAVEALLKEV 632 + Q A+ ++ N DWL + + + + A+A+ EF+ N + A+E L+E Sbjct: 635 AAQKLAERFGSLEGVLNGDWLDMRQA--LPERQAKAVREFFDETANAQRARAIEQQLRE- 691 Query: 633 SPSIGRH---EKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 G H EK V+ + + V TGTL+ + R A+E + LGA V+ +S KT Sbjct: 692 ---FGMHWESEKKVAEGLPLAGQTWVLTGTLEVMSRDVAKEKLESLGAKVAGSVSAKTHC 748 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ G GSKL KA +LGVK+++E QFL L+ Y Sbjct: 749 VVAGPGAGSKLAKASELGVKVLDEAQFLEQLKSYG 783 >gi|197121145|ref|YP_002133096.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K] gi|254781542|sp|B4UDH6|DNLJ_ANASK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|196170994|gb|ACG71967.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K] Length = 687 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 242/715 (33%), Positives = 373/715 (52%), Gaps = 58/715 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L I D YY +P++ D+EYD L A+ P+L ++ P ++ G + Sbjct: 13 LRDRIRAADHAYYVLDQPLLADAEYDRLMHELQALEADHPELVTADSPT---QRVSGAPS 69 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 +V H P LSL + + ++L++F R+ R D + + +EPK+DG + + Y Sbjct: 70 ERFERVVHREPMLSLGNVQSDDELQEFDARVRRLLGLPDGEPVGYVVEPKLDGLAVELVY 129 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPT------IPRVLSLNIPEIIEVRGEVYISKND 197 G F + RGDG +GEDV+A +R + +P L P +EVRGEV + K Sbjct: 130 RDGAFTSGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGRPPPRVEVRGEVLLFKEH 189 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F A+N +++ G P+ANPRNAA+G LR+L+ R L+F + + + +E Sbjct: 190 FEAMNRQLVRAGEAPFANPRNAAAGTLRQLDWRVTARRPLSFIAYEALLPGDDPWRTHWE 249 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+++ GF N R+ +++Y + M R LPYD DG+V KVD+ +++LG Sbjct: 250 KLEELAAWGFETNAENRRCRGLAEVLAYRDRMAERRFELPYDTDGIVVKVDDLDWRRRLG 309 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++ PRW ++ K+ ++ +TR+ I +GRTG+LTPV +PV + GA++ ATLHNE Sbjct: 310 AASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLSGAMVARATLHNE 369 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D ++ +DI GD VLV+RAGEVIP+VV + R QPF FP+ CP+ Sbjct: 370 DEMR-----------RKDILEGDWVLVRRAGEVIPEVVKPLPERRTGAEQPFRFPAECPV 418 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-------- 488 C +RVVR+ K +RCTG AC AQ + RL HF R A +IEGLG+ Sbjct: 419 CGARVVREEGEKV------YRCTGA-ACPAQLVGRLCHFAQRRALDIEGLGEKLAAGLVE 471 Query: 489 --QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 Q DF ++ A + +F+ R++Q + E + S N+ ++ + R Sbjct: 472 RGQVKDF---ADLYAVPFEVWQQLFSRPRKEQDAGAARE----LPEKSAQNMVAALERSR 524 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RF+F+LGI VG A +LA+++ + + D +L V VG Sbjct: 525 KTTLRRFLFALGIPQVGEATAATLARHF----------GGLARVMDADEEALKGVRDVGP 574 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A I + Q P+N VE LL V+P E K +V TG L + R Sbjct: 575 ETAAEIRAWTQEPQNRRVVERLLAAGVTPEAEVVE--ARGPFAGKTVVLTGGLSTMSRDD 632 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + + G VS +SRKTD+++ G++ GSKLEKA+ LGV+I EE+F+ LL++ Sbjct: 633 AKAEIERRGGRVSGSVSRKTDLVVAGEDAGSKLEKARSLGVRIAGEEEFVRLLKE 687 >gi|300173629|ref|YP_003772795.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811] gi|299888008|emb|CBL91976.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811] Length = 681 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 255/720 (35%), Positives = 396/720 (55%), Gaps = 61/720 (8%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 +L PIE LS E A+ E++ L+ ++ + YY+ PI+ D YDAL R A+ FP Sbjct: 4 ELKPIEKLSREAAQHEIAKLQDDLRQYGIAYYEQDAPIVEDYIYDALYARLVALETVFPQ 63 Query: 65 LARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 +P+ P +GG M S L KV H P LSL ++++E+L ++ +R + + D Sbjct: 64 FI---NPDSPTQNVGGAMTKSGLEKVVHPAPMLSLGDVFSLEELDEWDSRTTKSLGFQSD 120 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + LE KIDG + + Y GK V A+ RG+G GEDV+A ++ I IP+VL N P Sbjct: 121 ----YNLELKIDGLAVALTYVSGKLVQASTRGNGTIGEDVTANVKMIKAIPQVL--NEPI 174 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242 IEVRGE+Y+ K+ F LN + G P+ANPRNAA+G LR+LN + R L+ FV+ Sbjct: 175 TIEVRGEIYMPKSSFSTLNKQRELDGLAPFANPRNAAAGSLRQLNAKIMKQRNLSAFVYY 234 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + + Q + L++ LG P + R I +Y E R L Y IDG+ Sbjct: 235 TAEPDILGSTTQSDALKRFSSLGLPTDTHNRVMTKMADINNYIAEYTVTRDNLAYGIDGV 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KV++ Q LG + PRW I++KF ++A T + I+ +GRTG +TP A ++PV Sbjct: 295 VVKVNQLDDQLDLGNTVKIPRWAIAYKFPPEEALTVVRAIEWTVGRTGAVTPTAVMDPVQ 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G + A+LHN DY+ + +R+ D V + +AG++IP++ +I+++R Sbjct: 355 LAGTTVQRASLHNPDYLN-----------EKGVRLEDTVTLHKAGDIIPEIGQVILSKRP 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 ++ + P FCP CQS +V G++ A RC CSAQ E L HF SR+A N Sbjct: 404 TGSEAYEIPVFCPACQSELVH----IEGEV--ALRCINPF-CSAQIQEGLTHFASRNAMN 456 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEG+G + ++ K++ I+ A I+ L Q S K F + +V NL SI Sbjct: 457 IEGMGPKVIEQLLKAD----YIKDVAAIYRLTSEQLFSLDK------FKEKAVNNLLMSI 506 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + ++ SLE+ +F LGIR VGA+ AR LA + + Q+ A IA+ + Sbjct: 507 ARSKDNSLEKLLFGLGIRMVGAKAARVLAGKFKNLQSIATATTEDIAN----------ID 556 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIE------NKKLVFT 655 +GD IA++IV+++ P + + LL+E++ + G ++K +S EI+ +K++V T Sbjct: 557 GIGDRIARSIVQYFDMPES----KQLLQELTDA-GVNQKYLSDVEIDENNFFYHKRIVLT 611 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G L+K R +++ GA VS +S KTD++I G+ GSKL KA +LGV E++F+ Sbjct: 612 GKLEKNSRSMVTKWLQDHGASVSGAVSAKTDLLIAGEAAGSKLRKANELGVPTWTEQEFI 671 >gi|239994967|ref|ZP_04715491.1| DNA ligase, NAD-dependent [Alteromonas macleodii ATCC 27126] Length = 593 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 228/609 (37%), Positives = 349/609 (57%), Gaps = 47/609 (7%) Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179 KD ++ F+ EPK+DG ++I YE G+ V AA RGDG GE+++A +R I +P L Sbjct: 22 KDSATLDFSCEPKLDGLAVSILYENGELVRAATRGDGQVGENITANVRTISNVPLTLRGE 81 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLN 237 + PE +EVRGEV++ + F LN+ G K +ANPRNAA+G LR+L+ + IT R L Sbjct: 82 HYPERVEVRGEVFMPREGFAKLNEHQKETGGKVFANPRNAAAGSLRQLD-SKITAKRPLM 140 Query: 238 FFVHGLG---KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 F+ + LG S E L+++ G P+ + A G ++YYN + R + Sbjct: 141 FYAYSLGVVQPESFELPTTHSERLKQLGNWGLPLCPDIDTAEGGKGCLAYYNHILEKRDS 200 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LPYDIDG+V+KV+ LQ LG AR+PRW I+ KF ++ T+LLD++ Q+GRTG +TP Sbjct: 201 LPYDIDGVVFKVNRIDLQDALGFVARAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITP 260 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARLEPV +GG ++NATLHN+D I L ++VGD V+++RAG+VIP+VV Sbjct: 261 VARLEPVFVGGVTVSNATLHNQDEISRL-----------GVKVGDTVVIRRAGDVIPQVV 309 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 ++ R +FPS CP+C S+V + + A RCTGGL C+AQ+ + LKH Sbjct: 310 SVVEANRTGSETDITFPSQCPVCDSQVEKLEDE------AVARCTGGLICAAQRKQALKH 363 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F SR AF+I+GLG + +D ++ + PAD FTL S + + + S Sbjct: 364 FASRKAFDIDGLGDKLVDQLVDAD----LVHSPADFFTL------SLGDVVGLERMAEKS 413 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + L S+ + +L +F+++LGIR VG A +LA ++ + + A Sbjct: 414 ASKLLASLEASKQTTLAKFLYALGIREVGEATAANLAAHFETLE----------AIREAS 463 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKL 652 +L+ V VG+++A I F+ N ++ALLKE P+I + + + + +E K Sbjct: 464 LEALVEVQDVGEVVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDSD-NLPLEGKTC 522 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL ++ R A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+L V++ +E Sbjct: 523 VITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELDVEVWDEA 582 Query: 713 QFLFLLQQY 721 + L ++ Sbjct: 583 ALIAFLSEH 591 >gi|254480787|ref|ZP_05094034.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148] gi|214039370|gb|EEB80030.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148] Length = 677 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 250/699 (35%), Positives = 388/699 (55%), Gaps = 59/699 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD R+ FP+L +ED P ++G + +VTH +P Sbjct: 24 YYVLDDPSVPDAEYDRYLRQLQGFEEQFPELV-TED--SPTQRVGSKPLSQFSQVTHEVP 80 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ ++ +L F R+ R + D +I ++ EPK+DG +++ Y G A R Sbjct: 81 MLSLDNAFDATELVDFERRL-RDRLGEPDLAIEYSCEPKLDGIAVSLLYRDGILERGATR 139 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 GDG +GED++ +R IP+IP L + P+I+EVRGE+Y+ F LN + G K + Sbjct: 140 GDGTTGEDITQNVRTIPSIPLQLRGDGYPQILEVRGEIYMPLAGFDQLNRRALEKGEKVF 199 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQY--EMLQKMRCL---GF 266 NPRNAA+G LR+L+ + IT R L + +G + GQ E + CL G Sbjct: 200 VNPRNAAAGSLRQLD-SRITAQRPLEMCCYSVG----LVQGGQLPPEHAAVLDCLHRWGL 254 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 +N + YY + R +LPYDIDG+VYKV+ Q +LG +R+PRW I Sbjct: 255 RINAESQVVTGVQACEQYYESLAKRRDSLPYDIDGIVYKVNRLDQQSRLGFVSRAPRWAI 314 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 + KF ++ T+LLD++ Q+GRTG +TPVARLEPV +GG ++NATLHN D I+ L Sbjct: 315 ARKFPAQEEMTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNADEIERL---- 370 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 +RVGD V+V+RAG+VIPKVV +++++R D++ FPS CP+C S R+ + Sbjct: 371 -------GLRVGDFVVVRRAGDVIPKVVSVVLDKRPGDSRAVEFPSHCPVCNSATEREPD 423 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 A RC GGL C+AQQ +KHF SR A +I+GLG + ++ D + Sbjct: 424 E------AVIRCMGGLVCAAQQKAAIKHFASRRAMDIDGLGDKLVEQMV---DEGLLENV 474 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 A +++L + Q + ++ G+ S NL ++ ++ SL RFIF+LGIR VG Sbjct: 475 -ASLYSLHKDQLMALERM------GEKSADNLLAALAASKDTSLPRFIFALGIREVGEAT 527 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 A +LA+++ S+ ++A + + SL+ V VG ++A + +F+ + + E Sbjct: 528 ALNLARHFGSWP-------ELVAASEE---SLLDVDDVGPVVADHLRQFFDSTSGMAVAE 577 Query: 627 ALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 A L+E P I ++V + + V TG L+ + R++A+ + LGA V+ +S Sbjct: 578 A-LREAGVRWPDIEIAAESVLP-LAGQTWVVTGKLELMGRNEAKAALQTLGAKVAGSVSA 635 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 KT ++ G GSKL KAQ LGV++++E F+ LL+Q+ Sbjct: 636 KTHCVVAGPGAGSKLAKAQDLGVEVIDEITFVALLEQHG 674 >gi|153003607|ref|YP_001377932.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5] gi|166215389|sp|A7H8A2|DNLJ_ANADF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152027180|gb|ABS24948.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5] Length = 699 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 246/730 (33%), Positives = 384/730 (52%), Gaps = 62/730 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A + L I D YY +P++ D+EYD L R I A P+LA S+ P Sbjct: 8 DSAETRAAELRARILDADHAYYVLDRPVLADAEYDRLVRELAEIEAAHPELATSDSPT-- 65 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++ G + +V H P LSL I + +L +F R++R D + + EPK+ Sbjct: 66 -QRVSGAPSERFERVVHREPMLSLGNIQSDGELDEFDARVHRLLGLAGDVQVGYVAEPKL 124 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP------TIPRVLSLNIPEIIEVR 188 DG + + YE G+ V + RGDG +GEDV+A +R + +P L+ +P +EVR Sbjct: 125 DGLAVELVYEGGRLVQGSTRGDGVNGEDVTANLRTVGRTRANRGVPERLAGEVPPRVEVR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH------ 241 GEV + K F A+N +++ G +P+ANPRNAA+G LR+L+ R L+F + Sbjct: 185 GEVLLFKEHFEAMNRQILRAGDEPFANPRNAAAGSLRQLDWRVTARRPLSFIAYEALVPG 244 Query: 242 ---GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 G + + E L+ + GF N + + +Y + M R LPYD Sbjct: 245 AEPGGARAGPWAWRTHAEKLEALARWGFETNAENERCEGIAAVKAYRDRMAERRFALPYD 304 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 DG+V KVD+ +++LG ++ PRW ++ K+ ++ +TR+ I +GRTGILTPV Sbjct: 305 TDGVVVKVDDLDWRRRLGAASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGILTPVVDF 364 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + GA+++ ATLHNED ++ +D+ GD +LV+RAGEVIP+VV + Sbjct: 365 EPVRLSGAMVSRATLHNEDEMR-----------RKDVLEGDWILVRRAGEVIPEVVMPLK 413 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R + +PF+FP+ CPIC ++VVR+ K +RCTG AC AQ + RL HF R Sbjct: 414 ERRTGEERPFAFPAECPICGAKVVREEGEKV------YRCTGA-ACPAQLVGRLTHFAQR 466 Query: 479 DAFNIEGLG-KQQLDF----FFKSEDPAFSIRIPA--DIFTLQRRQQTSTTKIENILGFG 531 A +I+GLG K L K +++ PA ++F+ R+++ K E Sbjct: 467 RAMDIDGLGDKLALGLVERGLVKDFADLYAVPFPAWQELFSRPRKEERD-AKAE----LP 521 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 S N+ D++ + + +L R +F+LGI VG A +LA+++ E+ + + Sbjct: 522 QKSAQNMVDALERSKATTLRRLLFALGIPQVGEATAATLARHF-------GELARFMDAS 574 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENK 650 D +L+ V VG A+ I + + P+N VE LL V P+ + K Sbjct: 575 ED---ALLAVRDVGPETAREIRAWTEEPQNRRVVERLLAAGVRPAP--ETVDAGGPFAGK 629 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG L + R A+ + + G VS +SRKTD+++ G GSKLEKAQ LGV+++ Sbjct: 630 TVVLTGGLAALSRDDAKAEIERRGGKVSGSVSRKTDLVVAGAEAGSKLEKAQALGVRVVG 689 Query: 711 EEQFLFLLQQ 720 EE+FL +L++ Sbjct: 690 EEEFLRMLEE 699 >gi|312144161|ref|YP_003995607.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus'] gi|311904812|gb|ADQ15253.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus'] Length = 670 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 239/687 (34%), Positives = 396/687 (57%), Gaps = 50/687 (7%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 Y+ P I D+E+D L + + FP+L + + P ++GGE+ KV HS Sbjct: 27 YFVLDDPQISDAEFDKLMQDLLKLESQFPELVTA---DSPTQRVGGEVLDEFEKVEHSTE 83 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ +N E+LR F R+ + ++D + +E KIDG IRY+ G F A R Sbjct: 84 MLSLDNSFNAEELRGFDQRVKKNTTERDYQ---YIVEHKIDGLSAVIRYQGGSFQLGATR 140 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 G+G GE+++ ++ I ++P L + +E+RGE+Y+SK++F +N++ + +KP+A Sbjct: 141 GNGEVGENITENMKTIRSLP--LKIEDKAELELRGEIYLSKSEFERINEKRLENEKKPFA 198 Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G +R+L+ +R L+ ++ L S + E+ + GF VN + Sbjct: 199 NPRNAAAGSVRQLDSKIAASRRLSILIYDLISHSNREFETHLEVFAYLEEQGFNVN-WHK 257 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 +A+ ++ E + R +L ++IDGLV K++ +L+++LG ARSPRW I++KF + Sbjct: 258 KADDIGKVIEICQEWEEKRESLDFEIDGLVVKINNLNLREELGSTARSPRWAIAYKFPAQ 317 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 Q +TR+ I+I +GRTG LTP A LEPV I G+ ++ ATLHNED IK + Sbjct: 318 QKTTRVKSIEISLGRTGALTPTAVLEPVEIAGSTVSRATLHNEDEIK-----------RK 366 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIR+GD VLV++AG+VIP+VV +I +R + F P CP+C ++V R P+ Sbjct: 367 DIRIGDIVLVQKAGDVIPEVVKVIKEKRDGCEKEFEMPDHCPVCGTKVKR---PEGE--- 420 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RCT ++C AQ+ E++ HFVSRDA NIEG+G +D +++ I D++ L Sbjct: 421 AVTRCT-NISCPAQRKEKILHFVSRDAMNIEGVGPALVDQLLEND----LIDDYGDLYFL 475 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 ++ ++N+ G+ S N+ D+I + ++ R I++LGIRHVG AR+L+ Sbjct: 476 KKHH------LQNLERMGEKSSQNVIDAIKQSKDREFFRVIYALGIRHVGLGAARTLSDN 529 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 Y S I+ ++ +N++ L + +G +IA +I++F+ +N + + L++ Sbjct: 530 YSS-------ISQLMEASNEE---LEEIDEIGPVIADSIIDFFAEKQNRDLI-SRLRQAG 578 Query: 634 PSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 ++ R + +E K VFTG+L R + ++ V + G + +S KTD +++GD Sbjct: 579 INLSRENTEEKEKFLEGLKFVFTGSLNDFTRSEVKDLVEKAGGRSVSSVSSKTDYLVIGD 638 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 NPGSK +KAQ+LG+KI++E +F LL+ Sbjct: 639 NPGSKYQKAQELGIKILSESEFKELLE 665 >gi|187928361|ref|YP_001898848.1| DNA ligase [Ralstonia pickettii 12J] gi|254781397|sp|B2UB00|DNLJ_RALPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|187725251|gb|ACD26416.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12J] Length = 817 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 240/680 (35%), Positives = 365/680 (53%), Gaps = 67/680 (9%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E++ + YY +P + D EYD L R +A+ P+L + P+ P ++GG + Sbjct: 24 LRAELNRYAHEYYVLDQPSVPDVEYDRLYRELEALETEHPEL---KTPDSPTLRVGGAVL 80 Query: 84 LSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMIT 140 V H IP LS+ E R F + R D D + + E K DG I Sbjct: 81 PEFAAVRHVIPMLSIRTETDTTANGARAFDASVRRELGLDDTDPPVEYAAELKFDGLAIN 140 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKND 197 +RYE+G V AA RGDG +GEDV+ IR I IP LS ++P+++EVRGEVY+ ++D Sbjct: 141 LRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHVPDVLEVRGEVYMRRDD 200 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAKGQ 254 F LN G K + NPRN A+G +R+L+P R L+FF +GLG+ + + Sbjct: 201 FEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEVAGWKGMPGTH 260 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ML ++ GFPV+N G+V ++ +++ R +LP+DIDG+VYKV+ +LQ++ Sbjct: 261 SSMLDVLQAFGFPVSNERAAVAGGEGLVRFHEAIRAKRDSLPFDIDGVVYKVNSLALQRE 320 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG R+R PRW ++HK+ ++A T + ID+Q+GRTG +TPVARL PV +GG +TNATLH Sbjct: 321 LGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITPVARLVPVFVGGVTVTNATLH 380 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER------------- 421 NED ++ +D+RVGD V+V+RAG+VIP+VV ++++ R Sbjct: 381 NEDEVR-----------RKDVRVGDTVIVRRAGDVIPEVVSVVLDRRPLDDVPGSDLFNP 429 Query: 422 --HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 P PF P CP+C S VVR+ G+ VA RC+GGL CSAQ+ E ++HF R Sbjct: 430 QQQPKYPPFELPKTCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAGRR 483 Query: 480 AFNIEGLGKQ------QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 +IEGLG++ +LD+ D + + + D ++RR + G + Sbjct: 484 MMDIEGLGERYIDNLVELDYVHGIAD-LYKLTL-EDFLEMKRRADERDGVTPETVSAGKI 541 Query: 534 SVT---NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + NL + I + L RF+F+LGIRHVG A++LA + S + ++ Sbjct: 542 ATKWAENLLEGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAMIRRAPAPLLLA 601 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIE 648 D VG +A+AI +F+ P+N A++ALL+ G H N ++E Sbjct: 602 LPD----------VGATVAEAIADFFAEPKNQQALDALLEAGVAPQGEHAPNAKLREKLE 651 Query: 649 NKKLVFTGTLQKIQRHKAQE 668 +L T + K+ +A++ Sbjct: 652 PAELYATLGVPKLTATRAKQ 671 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 50/74 (67%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 ++ K +V TGTL + R +A+ + GA VS +S+KTD ++ G++ GSKL KA++L V Sbjct: 738 LDGKTVVLTGTLPNLTRDEAKAMLEAAGAKVSGSVSKKTDYVVAGEDAGSKLAKAEELNV 797 Query: 707 KIMNEEQFLFLLQQ 720 K+++E L LL++ Sbjct: 798 KVLDEAGMLALLKK 811 >gi|294661389|ref|YP_003573265.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus 5a2] gi|254781251|sp|C3L496|DNLJ_AMOA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|227336540|gb|ACP21137.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus 5a2] Length = 671 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 227/711 (31%), Positives = 381/711 (53%), Gaps = 50/711 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQARKE+ L ++YH+ YY+ ++P I D E+D L + A+ + FPDL PN P Sbjct: 4 EQARKEIKRLTALVAYHNKLYYEEAQPEISDYEFDQLLEKLIALENQFPDLRL---PNSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE + V H P LSL ++ E++ +F+ R ++ + +I F E K Sbjct: 61 TQRVGGEPSKKFATVYHQYPMLSLSNTYSAEEVMQFVKRAHK---QLPGATIEFFCELKF 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYI 193 DG I++ Y++GK RGDG G+D++ + IP IP+++ ++P EVRGE ++ Sbjct: 118 DGVAISLLYKEGKLDKVVTRGDGFKGDDITENAKQIPNIPQIIEHKDLPPAFEVRGEAFM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 S DF LN + +A G +P ANPRNA +G L+ L T R+L+ +++ L T Sbjct: 178 SLADFEKLNRDRLAHGLEPLANPRNATAGTLKTLKSTGPKRWLDCYMYSLLSTDMDLPTH 237 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + +Q + F V+ ++ T +++Y +S +++LP IDG+V KV++ Q Sbjct: 238 EV-CIQWLEKWCFHVSPTYKKCRTLEEVMAYIEYWESAKNSLPVAIDGVVIKVNDTLQQN 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++K+ + +T L +D Q+GRTG++TPVA L+P+ + G ++ ATL Sbjct: 297 KLGLTAKSPRWAIAYKYKPENLATILESVDYQVGRTGVITPVAHLKPILLAGTIVKRATL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN +G++ R D+ +GD V +++ GE+IPK+ V++R D++P F + Sbjct: 357 HN---------AGEIQR--LDLHLGDTVFIEKGGEIIPKITGTDVSKRSLDSEPVKFVTH 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + +V+ A + C C Q LKHFV R A +I +GKQ ++ Sbjct: 406 CPACGTELVKRYEK------ALYYCPNTKGCPYQLQGLLKHFVHRKAMDIRSIGKQTIEM 459 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + PAD+++L+ + I ++ GF D++ N+ I + ER Sbjct: 460 LINRG----LVHTPADLYSLKYQD------IRSLEGFKDLATRNVLSGIESSKQRPFERV 509 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIRHVG IA + +YY +I +N LI +P +G IA ++ Sbjct: 510 LFALGIRHVGEVIADKITQYY----------TDIDTLSNATVEDLIAIPFIGTEIAHSVT 559 Query: 614 EFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +++NP N+ ++ L L+ P + S + K V +GT Q +R + +E Sbjct: 560 NYFENPENLALIDVLKQAGLQLSRPQLATVFATQSLPLSGKTFVISGTFQNFEREELKEL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G + +S K + +I+G+NPG K+ +AQ LG+ +NE + L +L+ Sbjct: 620 IKKKGGGILTNISAKLNYLIIGENPGPGKVAQAQALGISTINETEILQMLE 670 >gi|332982281|ref|YP_004463722.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON] gi|332699959|gb|AEE96900.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON] Length = 665 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 246/707 (34%), Positives = 383/707 (54%), Gaps = 48/707 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + ++ L Q I +H+ YY P I D+EYDAL R + + +P++ P+ P Sbjct: 5 EDVIQRVNELRQIIEHHNYMYYVLDSPEISDAEYDALMRELEQLESKYPEII---TPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG+++ V HS+P LSL +++ ++R F R+ + + + + LE KI Sbjct: 62 TQRVGGQVSGQFQPVVHSVPLLSLNDVFSESEIRDFDRRV----RAALNEDVQYVLEVKI 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + + Y+ G F+ A RGDG GEDV+A +R I +IP L L +P +EVRGEV++ Sbjct: 118 DGLSVALTYQDGLFIRGATRGDGFVGEDVTANLRTIRSIP--LRLKMPINVEVRGEVFMP 175 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K F LN++ G +ANPRNAA+G +R+L+P R+L+ FV L + + Sbjct: 176 KKYFYKLNEQREKDGLPLFANPRNAAAGSVRQLDPAITAQRHLDIFVFNLQRIEGYAFET 235 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L ++ GF + + +T + + R LPY+IDGLV KV+ ++ Sbjct: 236 HVESLMFLKEQGFKIMPYLIPCDTIDEAIEQCRLWEGKRYELPYEIDGLVIKVNSLRQRE 295 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG +++PRW +++KF ++ + + I +Q+GRTG+LTP A LEPV + G ++ ATL Sbjct: 296 ILGNTSKTPRWAVAYKFPAERKESIIKHIVVQVGRTGVLTPTAVLEPVRLAGTTVSRATL 355 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNEDYIK +DIR+GD VLV++AG++IP+VV +I +R D + F P Sbjct: 356 HNEDYIK-----------EKDIRIGDHVLVQKAGDIIPEVVSVIKEKRTGDERIFEMPDK 404 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C + VR G+ AA RCT G++C AQ L HF SRDA +IEGLG + Sbjct: 405 CPVCGADAVR----IDGE--AARRCT-GVSCPAQVERGLIHFASRDAMDIEGLGPAVVRQ 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + IR ADI+ L+ K+E + G S NL ++I ++ L R Sbjct: 458 LLNKK----LIRDEADIYYLKYE---DLVKLERM---GPKSAQNLINAIQASKDRGLARL 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++LGI VG A LA+ + +I D L +P +G IA+++V Sbjct: 508 LYALGIPLVGTRAASILAERF----------GDIYELMKADQAQLTAIPEIGPKIAESVV 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F++ + ++ L ++ ++ + V TGTL K R +A E + L Sbjct: 558 TFFKQEQTKDLIKRLETAGVRLTADKKQKGNAPLAGLTFVLTGTLSKYTREQATEIIEGL 617 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G V+ +S+KTD +I GD PGSKL+KA QLGVK+++E +F +L+ Q Sbjct: 618 GGKVTGSVSKKTDYVIAGDGPGSKLDKALQLGVKVIDENEFEWLIGQ 664 >gi|238026897|ref|YP_002911128.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1] gi|237876091|gb|ACR28424.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1] Length = 747 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 257/769 (33%), Positives = 390/769 (50%), Gaps = 104/769 (13%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q + + L QE+ + YY +P +LD+EYD L R I PD P+ P Sbjct: 13 QPSERAAWLRQELERANHAYYVLDQPELLDAEYDRLFRELQQIEAEHPDFI---TPDSPT 69 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFTL 130 ++GGE V H P LSL + ED+ F R+ K D + + Sbjct: 70 QRVGGEAADGFTPVLHDAPMLSLNNGFTDEDIAAFDKRVADALGKAVDLAGTAEPVEYAC 129 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRG 189 E K DG I++RY GKF AA RGDG +GEDV+ +R I +IP L + P +++VRG Sbjct: 130 ELKFDGLAISLRYVHGKFTQAATRGDGTTGEDVTENVRTIKSIPLTLKGKHPPALLDVRG 189 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247 EV + K DF LN+ A ++ +ANPRNAA+G LR+L+ + +T R L+FF +G+G Sbjct: 190 EVLMYKRDFARLNERQRAAEQREFANPRNAAAGSLRQLD-SKVTAQRPLSFFAYGIGVLD 248 Query: 248 EIFAKGQYE-MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + +L LG PVN G++ ++ ++ R LPYDIDG+VYKV Sbjct: 249 GAPMPDTHSGLLDWYESLGLPVNRERAVVQGAEGLLDFFRKVGEKREALPYDIDGVVYKV 308 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + Q +LG +R+PR+ ++HKF ++A TRL+ I++Q+GRTG +TPVARLEPV +GGA Sbjct: 309 NRRDEQDRLGFVSRAPRFALAHKFPAQEARTRLVAIEVQVGRTGAITPVARLEPVFVGGA 368 Query: 367 LITNATLHNEDYIKGLD------------------------------------------- 383 +TNATLHNED ++ D Sbjct: 369 TVTNATLHNEDEVRRKDIRVGDTVIVRRAGDVIPEVVGRDGPHAMQVRVRFRGVRTVARR 428 Query: 384 -------ASGKVMR-GGRDIRVGDRVLVK-RAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 +SG+ M R ++ DR ++ R G + P + + + E PF P+ C Sbjct: 429 NRLRAAASSGRPMTWKPRLLKPTDRRGIRVRRGCLRPSLFEFVEQE------PFRMPTEC 482 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C SR+ R + A RCTGGL C AQ+ + L HF R A +I+GLG++ +D Sbjct: 483 PVCGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQL 536 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + +R PAD+F L + + F + S NL DS+ K R+ +L RFI Sbjct: 537 VEQN----LVRTPADLFHL------GFATLAALDRFAEKSAQNLLDSLEKARHTTLARFI 586 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIRHVG A+ LAK++ + Q + + ND VG ++A+++ + Sbjct: 587 YALGIRHVGESTAKDLAKHFGALQPIMDASIDALLEVND----------VGPVVAESLHQ 636 Query: 615 FYQNPRNICAVEALLKEV----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F+ N + L ++V P R + V + K +V TGTL + R +A+ + Sbjct: 637 FFAEEHNRTVIAQLREKVDWPEGPPAPREPQGV---LAGKTVVLTGTLPTLSRDEAKALL 693 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ LL+ Sbjct: 694 EAAGAKVTGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMHQLLK 742 >gi|119503165|ref|ZP_01625249.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080] gi|119460811|gb|EAW41902.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080] Length = 673 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 233/697 (33%), Positives = 374/697 (53%), Gaps = 57/697 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY+ P + DSEYD + FP L ++ P ++G V H +P Sbjct: 24 YYRNDAPTVSDSEYDRTLLALRELEQKFPHLVSADSPT---QRVGAAPLEGFETVVHRLP 80 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ +N +DL F R+ ++ D + + EPK+DG ++I +++G+ AA R Sbjct: 81 MLSLDNAFNADDLLDFDRRVR---ERLDGAQVRYACEPKLDGIAVSIVWQEGELTLAATR 137 Query: 155 GDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 GDG +GE+++ +R I ++P R+ NIP +E RGE+++ + F A N G KP+ Sbjct: 138 GDGRTGENITQNVRTIDSVPLRLSGENIPRYLEARGEIFMPRAGFEAFNARARRDGGKPF 197 Query: 214 ANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAK--GQYEMLQKMRCLGFPVN 269 NPRNAA+G LR+L+ + ITR L+F +GLG + E + ++ G P++ Sbjct: 198 VNPRNAAAGSLRQLD-SSITRRRPLSFCAYGLGYVEGMSGALLSHTEAMAQLNQWGLPIS 256 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 R G YY ++ +R L +DIDG+V+KVD F+ Q++LG +R+PRW I+ K Sbjct: 257 EHSRSVPGIDGCERYYEDLSQVREGLGFDIDGIVFKVDTFAEQERLGFVSRAPRWAIARK 316 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 F ++ T +L ++ Q+GRTG +TPVARL+PV +GG ++NATLHN D I L Sbjct: 317 FPAQEEMTVVLGVEFQVGRTGAVTPVARLDPVFVGGVTVSNATLHNADEIARL------- 369 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449 I+VGD V+V+RAG+VIP+V ++V+ R P A+ +FP CP C S +VR+ Sbjct: 370 ----GIKVGDTVIVRRAGDVIPQVAGVVVDRRLPQAEDVAFPDSCPACDSVLVREPGE-- 423 Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509 A RC G AC AQ+ ++HFVSR A +I+G G++ +D + I+ +D Sbjct: 424 ----AVWRCDAGSACPAQRRAAIEHFVSRRAMDIDGCGEKIIDQLVDLD----LIKTASD 475 Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 ++ L Q + +E + G S NL +I +N +L RFI++LGIR VG AR Sbjct: 476 LYEL---SQDTLAGLERM---GTKSAKNLQAAIEDSKNTTLSRFIYALGIREVGETTARQ 529 Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 LA+Y+ + + + D VG I+A + F+ +P + +L+ Sbjct: 530 LAEYFGALAPLFTATDEQLQEVED----------VGPIVAGHLQRFFADPGRQEMINSLI 579 Query: 630 KE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 +P + + +S + V TG L+++ R +A+E + GA VS+ +S KT Sbjct: 580 SHGVYWPAPEVQIGDLPLS----GQTWVVTGKLEQMSRDQAEERLRVFGAKVSSSVSGKT 635 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ G GSKL+KA L V +++E +F+ ++ + Sbjct: 636 SCVVAGPGAGSKLKKAHSLEVSVIDEAEFIIQMEGWQ 672 >gi|319787332|ref|YP_004146807.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1] gi|317465844|gb|ADV27576.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1] Length = 788 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 260/802 (32%), Positives = 422/802 (52%), Gaps = 128/802 (15%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + L + I + Y++ P I D++YDAL R +A+ P+LA +ED P ++G Sbjct: 12 AELRRRIEDANRRYHELDAPDITDAQYDALVRELEALEREHPELA-AED--SPTRRVGAT 68 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 + VTH++P LSL + E++ F+ RI R +++D + F+ EPK+DG I++ Sbjct: 69 PSGRFAAVTHAVPMLSLGNAFTDEEVADFVRRI-RQRLEREDGDLAFSAEPKLDGLAISL 127 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLA 200 RYE G FV A RGDG +GEDV+A +R I IP L+ P ++EVRGEVY+ + DF Sbjct: 128 RYEDGVFVQGATRGDGATGEDVTANLRTIGDIPHQLAGKGWPRVLEVRGEVYMGRADFER 187 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--KTSEIFAKGQYEM 257 N+ G K ANPRN A+G LR+ +P R L+FF +G+G + E+ Sbjct: 188 WNEHARLHGGKVLANPRNGAAGSLRQQDPKITAQRPLSFFAYGVGLVEGGEL-PPSHSAT 246 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+++R GFPV++ V+ G++ YY + R LP+DIDG+VYK+D+ Q+++G Sbjct: 247 LRQLRDWGFPVSDLVQVVRGLDGLLGYYRHIGEARDGLPFDIDGVVYKLDDQEGQREMGF 306 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PRW I+HKF ++ +T + +++ +GRTG +TP A ++PV +GG +T ATLHN D Sbjct: 307 VSRAPRWAIAHKFPAQEQTTVVESVEVSVGRTGAVTPWALMQPVLVGGVTVTRATLHNAD 366 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 ++ LD +R GD V+V+RAG+VIP+VV +++++R PDA+P+S P+ CP C Sbjct: 367 HVARLD-----------VRNGDTVIVRRAGDVIPEVVQVVIDQRPPDARPWSMPATCPAC 415 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---QQLDFF 494 S VVR+ + A RC+G L+C AQ ++ + HF SR A +I+GLG+ + L F Sbjct: 416 GSEVVRE------EGAAVWRCSGELSCPAQLVQSVFHFASRRAMDIDGLGERYIESLAEF 469 Query: 495 FKSEDPAFSIRIPAD-IFTLQRR--QQTSTTKI---ENILGFGDVS---VTNLYDSINKR 545 D + R+ D + ++RR ++ TT + ++ + G V+ NL +I+ Sbjct: 470 GYLRDVSDLYRLTLDDLLEMKRRADEREGTTPVAPAKSGVKSGKVATRWADNLLAAIDTS 529 Query: 546 RNISLERFIFSLGI---------------------RH-----------VGAEIARSLAKY 573 RN +L RF+++LGI RH +G E+AR+L + Sbjct: 530 RNTTLARFLYALGIQHVGESTAKALAQWLGDLELIRHLPWPLFRRLPDIGGEVARALGHF 589 Query: 574 YLSYQNFAQEINNII--------AHNND-------------------------------- 593 + N A I+ ++ +H D Sbjct: 590 FDQPGNQAV-IDRLLERGVRIGDSHAPDPRLGATLDLASLLADLEIPKITPVRAAQLASA 648 Query: 594 -DWLSLIRVPLVGDIIA-------QAIVEFYQNPRNI------CAVEALLKEVSPSIGRH 639 D +L+ PL + A A+V + + P N +A ++ + P+ Sbjct: 649 FDAQALVDAPLHNLVTAGLPPETASALVAWLEAPGNAELLLRSAQAQARVRALLPAA--- 705 Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 + S +E +V TGTL + R +A+E + LGA + +S+KT ++ G+ GSKL Sbjct: 706 DAVASGPLEGMTVVLTGTLSSMSRDEAKEKLEALGAKAAGSVSKKTSFVVAGEAAGSKLA 765 Query: 700 KAQQLGVKIMNEEQFLFLLQQY 721 KA +LG+++ +E + L L+Q+ Sbjct: 766 KAGELGIEVWDEARLLAFLEQH 787 >gi|199597353|ref|ZP_03210784.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001] gi|199591869|gb|EDY99944.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001] Length = 674 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 254/723 (35%), Positives = 391/723 (54%), Gaps = 65/723 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A E++ L ++++ YY P + D+ YD R A+ AFP L Sbjct: 5 PAAQFTLEEAEAEVAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLVT 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ Q +++ Sbjct: 65 ---PDSPTQQVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QANVGHAVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE G+ V + RGDG+ GEDV+ + I ++P+ +L P +EV Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNIGEDVTKNVLTIASVPK--TLKRPLSLEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245 RGE Y+ K F LN A G P+ANPRNAA+G LR+LNP IT R L+ F++ L Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPK-ITAGRELDTFIYTLID 234 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K Q+E + M+ LGF N A+ I +Y + S R LPY IDG+V K Sbjct: 235 ADRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 295 VNDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V ER + Sbjct: 355 TTVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVKERPANT 403 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P P CP C ++V L+ + A RC + C AQ E+L HF SR+A NI+G Sbjct: 404 PPAPIPEKCPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDG 456 Query: 486 LGKQ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 LG + QL + ++ D+ L R + T +E + F + S+ NL ++I Sbjct: 457 LGPKIIAQLQ----------AKKLVTDVADLYR---LTATDLEKLDKFKEKSINNLLNAI 503 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 N R S+ER IF LGIRHVG + AR LA+++ S ++ ++A + D + +P Sbjct: 504 NNSRQNSVERLIFGLGIRHVGGKAARILAEHFGS-------LDELMAADQD---QVAAIP 553 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTG 656 +G IA+A+V +++ VE L L+ P+ S + K +V TG Sbjct: 554 NIGPTIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPT---RPAVSDSFVSGKTVVITG 610 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + R + + + QLGA V+ +S+KTD++I GD GSKL KAQ L V IM+E L Sbjct: 611 KFAEFSRPELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLT 670 Query: 717 LLQ 719 L+ Sbjct: 671 NLK 673 >gi|322368190|ref|ZP_08042759.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253] gi|320552206|gb|EFW93851.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253] Length = 685 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 250/717 (34%), Positives = 383/717 (53%), Gaps = 61/717 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+ + A ++ L + I +HD YY + P I D YDAL R + AF Sbjct: 21 PVAEMDEAGASEQAELLREAIRHHDYRYYVENDPRIGDRTYDALFTRLQELEEAF----D 76 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P+ P ++GGE L V H P LS++ ED+R F RI+R + + Sbjct: 77 VQTPDSPTRRVGGEPLDELESVEHVAPMLSIDSSGEAEDVRGFDDRIHR-----EVGDVE 131 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +PK DG + + YE G+FV AA RGDG +GEDV+ +R I +IP L + P+ + V Sbjct: 132 YVCDPKFDGLSLEVVYEDGEFVRAATRGDGETGEDVTENVRTIASIPHHLRGDYPDYLAV 191 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+ + F N E + G P+ANPRNAA+G LR+L+P+ R L+ F + + Sbjct: 192 RGEVYLPLDAFTEFNRERVEQGEDPFANPRNAAAGSLRQLDPSVTAERPLDCFFYDVLAA 251 Query: 247 SEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 SE F +YE L + G VN+ + + + Y +E+ + R+ L Y+IDG V Sbjct: 252 SEEFPTHWSEYEALPE---FGLKVNDRTERVDDIEDCIEYRDELMADRADLNYEIDGTVI 308 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ +LG ARS RW ++KF + T ++D+ +Q+GRTG LTPVA LEPV++G Sbjct: 309 KVNDREKCAELGTTARSYRWAYAYKFPARSERTSIMDVTVQVGRTGRLTPVALLEPVDVG 368 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ A+LHN D I +DI VGD V VKRAG+VIP V +++ E+H + Sbjct: 369 GVTVSRASLHNPDEI-----------AEKDINVGDEVQVKRAGDVIPYVSEVV--EKHSE 415 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + P CP+C S V RD G + CTGGLAC+AQ + + ++ S D +I+ Sbjct: 416 GH-YELPDRCPVCGSPVERD-----GPIA---YCTGGLACTAQLRQAVAYYGSDDGLDID 466 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG+++++ + + +L + ++ + G+G+ S NL I K Sbjct: 467 GLGEERVNQLIDA----------GLLESLPDLYELDEKELLELEGWGEKSAENLLAEIEK 516 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + SL F+ ++GI VG E AR LA+ + S +++++ ++D+ L VP + Sbjct: 517 SKRPSLADFLSAIGIPRVGTETARELARTFES-------MDDVMNADSDE---LEAVPDI 566 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G +A I EF+ + RN VE LLK V P R E E+ + VFTG+L + R Sbjct: 567 GPKVAAGIREFFDSERNRSVVEQLLKHVEPE--REEVAGGDELADLTFVFTGSLSE-PRS 623 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 E V GA + +S TD ++VG+NPG SK A + V I++E++F LL++ Sbjct: 624 DISELVENHGANATGSVSGNTDYLVVGENPGESKPNDADENDVPILSEDEFWNLLEE 680 >gi|313497885|gb|ADR59251.1| LigA [Pseudomonas putida BIRD-1] Length = 776 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 220/621 (35%), Positives = 344/621 (55%), Gaps = 44/621 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + L E+ H+ YY +P + D+EYD L A+ P L P+ P Sbjct: 3 AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + +V H +P LSL + DLR+F R+ + ++ ++ EPK+DG Sbjct: 60 RVGGAAMAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 +++ Y G+ V A RGDG +GED+SA +R + IP ++ P ++EVRGEVY+SK Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN G K +ANPRNAA+G LR+L+ +R L F +G+G+ SE Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSESIGDSH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L++++ G P++ ++ A ++YY ++ R++LPY+IDG+V+KV+ + Q++ Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T +LD++ Q+GRTG +TPVARL+PV + G ++NATLH Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L +R+GD V+++RAG+VIP+V+ +++ R DA+P PS C Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQDARPVEVPSEC 406 Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S+ V R +T A +RC G LAC AQ + + H+VSR A +I+GLG+ Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ D I PAD++ LQ Q + + GF +VS L D+I + Sbjct: 467 KSVEQLV---DEGL-IGSPADLYKLQFEQ------VVGLEGFAEVSTQKLLDAIEASKRP 516 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL RFI++LGI VG E A+ LA+ S Q + ++ + +P +G + Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566 Query: 609 AQAIVEFYQNPRNICAVEALL 629 A I F+++ N ++ LL Sbjct: 567 AYEIHNFFEDEHNQKVIQQLL 587 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 13/121 (10%) Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRH---EKNVSS--EIENKKLVFTGTLQK 660 A A+ EF+++ N + L +++ + G H EK V+ + + V TGTL++ Sbjct: 656 ADAVREFFKDEAN----QKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLER 711 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL-FLLQ 719 + R A++ + LGA V+ +S KT ++ G GSKL KA +LGVK+++E+ F+ FL + Sbjct: 712 MSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFLAE 771 Query: 720 Q 720 Q Sbjct: 772 Q 772 >gi|116617684|ref|YP_818055.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272115|sp|Q03YP0|DNLJ_LEUMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116096531|gb|ABJ61682.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 680 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 252/718 (35%), Positives = 390/718 (54%), Gaps = 63/718 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PIE L+ + A++E + L++++ + YY+ P++ D YDAL R A+ FP Sbjct: 7 PIEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEKFPQYVI 66 Query: 68 SEDPNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P +G + L KV H P LSL ++++++L + R K N Sbjct: 67 ---PDSPTQNVGSADTKSELQKVVHPAPMLSLGDVFSLDELNDWDART----TKSLGNQA 119 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + LE KIDG + + Y G+ V A+ RG+G GEDV+A ++ I IP+ L P IE Sbjct: 120 PYNLELKIDGLAVALTYVDGQLVQASTRGNGIVGEDVTANVKTIKAIPK--KLTEPLTIE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF--FVHGLG 244 VRGE+Y+ K F ALN + A G +P+ANPRNAA+G LR+LN IT+ N FV+ Sbjct: 178 VRGEIYMPKASFAALNKQREADGLEPFANPRNAAAGSLRQLN-VKITKSRNLAAFVYYTA 236 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + + Q L++ LG P + R N I Y +E S R +L Y IDG+V Sbjct: 237 EPEMLGVTTQSGALERFAELGLPTDTHNRVINKMADIADYIDEYTSERESLSYGIDGVVV 296 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ LQ LG + PRW I++KF ++A T + DI+ +GRTG +TP A ++PV + Sbjct: 297 KVNQLDLQFDLGNTVKIPRWAIAYKFPPEEALTIVCDIEWTVGRTGAVTPTAVMDPVLLA 356 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + A+LHN DY++ +DI++GD V + +AG++IP++ +I+ +R D Sbjct: 357 GTTVQRASLHNPDYLR-----------EKDIQIGDTVTLHKAGDIIPEIGQVILEKRPTD 405 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 ++ + P+ CP C+S +V G++ A RC CSAQ E L HF SR+A NI+ Sbjct: 406 SETYQVPTICPACESNLVH----IEGEV--ALRCINPF-CSAQIQEGLTHFASRNAMNID 458 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + + K A I+ A I+ + Q + K F + S L D+IN Sbjct: 459 GMGPRVVGQLLK----AGYIKDVASIYRITVEQLLTLDK------FQEKSAVKLIDAINS 508 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + SLER +F LGIR VGA+ AR +A+ + + ++ IA+ N + Sbjct: 509 SKENSLERLLFGLGIRMVGAKAARLIAEKFRTLSAVSEASVEDIANING----------I 558 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--EN-----KKLVFTGT 657 G IAQ+IV+++ P + + LL E++ S G ++ +S + EN KK+V TG Sbjct: 559 GHTIAQSIVQYFSTPES----KQLLVELASS-GVNQSYLSDTVIDENSFFYGKKVVLTGK 613 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 L++ R A +++ GA V+ +S KTD++I G+ GSKL+KA QLGV + E+QF+ Sbjct: 614 LEQSSRPAATKWLQDHGANVAGSVSVKTDLVIAGEAAGSKLDKASQLGVTVWTEQQFV 671 >gi|167034833|ref|YP_001670064.1| NAD-dependent DNA ligase LigA [Pseudomonas putida GB-1] gi|190359275|sp|B0KPX3|DNLJ_PSEPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166861321|gb|ABY99728.1| DNA ligase, NAD-dependent [Pseudomonas putida GB-1] Length = 776 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 222/621 (35%), Positives = 344/621 (55%), Gaps = 44/621 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + L E+ H+ YY +P + D+EYD L A+ P L P+ P Sbjct: 3 AETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GGE + +V H +P LSL + DLR+F R+ + ++ ++ +PK+DG Sbjct: 60 RVGGEALSAFSQVRHEVPMLSLGNAFEETDLREFGRRVVEGLDQP--GAVDYSCKPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 +++ Y G+ V A RGDG +GED+SA +R + IP ++ P ++EVRGEVY+SK Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGEGWPAVLEVRGEVYMSK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN G K +ANPRNAA+G LR+L+ +R L F +G+G+ SE Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L++++ G P++ +R A ++YY ++ R++LPY+IDG+V+KV+ + Q++ Sbjct: 238 IGVLEQLKAWGMPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNNLAAQRE 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T +LD++ Q+GRTG +TPVARL+PV + G ++NATLH Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L +R+GD V+++RAG+VIP+V+ +++ R DA+P PS C Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPDDARPVEVPSAC 406 Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S+ V R +T A +RC G LAC AQ + + H+VSR A +I+GLG+ Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ D I PAD++ L Q I + GF +VS L D+I + Sbjct: 467 KSVEQLV---DEGL-IGSPADLYKLAFEQ------IVGLEGFAEVSSKKLLDAIEASKRP 516 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL RFI++LGI VG E A+ LA+ S Q + ++ + +P +G + Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566 Query: 609 AQAIVEFYQNPRNICAVEALL 629 A I F+++ N +E LL Sbjct: 567 AYEIHNFFEDEHNQKVIEQLL 587 Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 13/121 (10%) Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRH---EKNVSS--EIENKKLVFTGTLQK 660 A A+ EF+++ N + L +++ + G H EK V+ + + V TGTL++ Sbjct: 656 ADAVREFFKDEAN----QKLARDIEAQLLAFGMHWSCEKKVAEGLPLAGQTWVLTGTLER 711 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL-FLLQ 719 + R A++ + LGA V+ +S KT ++ G GSKL KA +LGVK+++E+ F+ FL + Sbjct: 712 MSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEDAFVTFLAE 771 Query: 720 Q 720 Q Sbjct: 772 Q 772 >gi|217077826|ref|YP_002335544.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B] gi|254781437|sp|B7IDX6|DNLJ_THEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|217037681|gb|ACJ76203.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B] Length = 665 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 240/693 (34%), Positives = 378/693 (54%), Gaps = 48/693 (6%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +EI YH+ YY + P+I D EYD L ++ + +P+ P P K+GG++ Sbjct: 13 LREEIEYHNYRYYVLADPVISDEEYDKLLKKLIELEKKYPEFY---SPTSPTQKVGGKVL 69 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 KV HSIP LSL+ +N E++++F RI + N + + E KIDG + +RY Sbjct: 70 DGFKKVMHSIPMLSLDNTYNEEEIKEFDERIKKLL---GVNEVEYVCELKIDGISVALRY 126 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 E G+FV A RGDG GED+S ++ I +IP L N+ IEVRGE+++ +F N Sbjct: 127 ENGQFVTALSRGDGIEGEDISENVKKIKSIPLRLFKNL--TIEVRGEIFMPVKEFEKYNK 184 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA-KGQYEMLQKM 261 G +P+ANPRNA +G +R+L+ + + R L+ F++ + EI+ K Q+E L+ + Sbjct: 185 IAEEEGLQPFANPRNATAGTIRQLDSSIVAKRNLDSFIYYV-VNPEIYGLKTQWEALKFL 243 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 + +GF N R + + ++ ++ EM R+ L Y IDGLV KV+ F Q++LGE A++ Sbjct: 244 KEIGFKTNPYSRLCHDVNCVIDFWKEMTKKRTQLDYWIDGLVIKVNNFEYQRKLGETAKA 303 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I+ KF +A +++L+I++ +GRTG++TPVA LEP+N+ G+++ A+LHN DYIK Sbjct: 304 PRWAIAFKFPSIKAESKILNIELNVGRTGVITPVAVLEPINLEGSIVKRASLHNFDYIK- 362 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GD V V++AG +IP++V +I +R P CPIC +V Sbjct: 363 ----------EKDIRIGDHVYVEKAGGIIPQIVSVIKEKRTGKELEIEIPKSCPICGGKV 412 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 K + A RC C + ++ FVS+ AFNI GLG++ ++ A Sbjct: 413 -----GKISEEEVAIRCLNP-HCPQKLKRHMEIFVSKSAFNISGLGEKIVEKIVD----A 462 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I ADIF L + + I G G S+ N+ + I K +N L R I LGI Sbjct: 463 RLINDVADIFYL------TPFDLAQISGLGQKSIANILEQIEKAKNTPLYRVIIGLGIPL 516 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG + A+ LA + S + +Q + L + +G +A+ I+E+++N + Sbjct: 517 VGEKTAKILADKFKSIKALSQA----------SYDELTSIEGIGPEVAKNIIEYFKNEKT 566 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 + L + SS++ V TG R + +E + +LG V+ + Sbjct: 567 KEIIRKLENAGVKLEQEEDTKKSSKLAGLTFVITGKFNSFTREEVKEIIEKLGGKVTNTV 626 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 S KTD ++VG+ PGSK +KA +LGVKI+NE++F Sbjct: 627 SSKTDYLLVGEKPGSKYQKALELGVKIINEDEF 659 >gi|227432449|ref|ZP_03914436.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351770|gb|EEJ42009.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 680 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 252/718 (35%), Positives = 390/718 (54%), Gaps = 63/718 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PIE L+ + A++E + L++++ + YY+ P++ D YDAL R A+ FP Sbjct: 7 PIEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEKFPQYVI 66 Query: 68 SEDPNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P +G + L KV H P LSL ++++++L + R K N Sbjct: 67 ---PDSPTQNVGSADTKSELQKVVHPAPMLSLGDVFSLDELNDWDART----TKSLGNQA 119 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + LE KIDG + + Y G+ V A+ RG+G GEDV+A ++ I IP+ L P IE Sbjct: 120 PYNLELKIDGLAVALTYVNGQLVQASTRGNGIVGEDVTANVKTIKAIPK--KLTEPLTIE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF--FVHGLG 244 VRGE+Y+ K F ALN + A G +P+ANPRNAA+G LR+LN IT+ N FV+ Sbjct: 178 VRGEIYMPKASFAALNKQREADGLEPFANPRNAAAGSLRQLN-VKITKSRNLAAFVYYTA 236 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + + Q L++ LG P + R N I Y +E S R +L Y IDG+V Sbjct: 237 EPEMLGVTTQSGALERFAELGLPTDTHNRVINKMTDIAGYIDEYTSERESLSYGIDGVVV 296 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ LQ LG + PRW I++KF ++A T + DI+ +GRTG +TP A ++PV + Sbjct: 297 KVNQLDLQFDLGNTVKIPRWAIAYKFPPEEALTTVRDIEWTVGRTGAVTPTAVMDPVLLA 356 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + A+LHN DY++ +DI++GD V + +AG++IP++ +I+ +R D Sbjct: 357 GTTVQRASLHNPDYLR-----------EKDIQIGDTVTLHKAGDIIPEIGQVILEKRPTD 405 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 ++ + P+ CP C+S +V G++ A RC CSAQ E L HF SR+A NI+ Sbjct: 406 SETYQVPTICPACESNLVH----IEGEV--ALRCINPF-CSAQIQEGLTHFASRNAMNID 458 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + + K A I+ A I+ + Q + K F + S L D+IN Sbjct: 459 GMGPRVVGQLLK----AGYIKDVASIYRITVEQLLTLDK------FQEKSAVKLIDAINS 508 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + SLER +F LGIR VGA+ AR +A+ + + ++ IA+ N + Sbjct: 509 SKENSLERLLFGLGIRMVGAKAARLIAEKFRTLSAVSEASVEDIANING----------I 558 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--EN-----KKLVFTGT 657 G IAQ+IV+++ P + + LL E++ S G ++ +S + EN KK+V TG Sbjct: 559 GHTIAQSIVQYFSTPES----KQLLVELASS-GVNQSYLSDTVIDENSFFYGKKVVLTGK 613 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 L++ R A +++ GA V+ +S KTD++I G+ GSKL+KA QLGV + E+QF+ Sbjct: 614 LEQSSRPAATKWLQDHGANVAGSVSVKTDLVIAGEAAGSKLDKASQLGVTVWTEQQFV 671 >gi|148652285|ref|YP_001279378.1| DNA ligase [Psychrobacter sp. PRwf-1] gi|190359276|sp|A5WCN7|DNLJ_PSYWF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148571369|gb|ABQ93428.1| DNA ligase, NAD-dependent [Psychrobacter sp. PRwf-1] Length = 686 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 252/709 (35%), Positives = 386/709 (54%), Gaps = 55/709 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ +L ++ H++ YY +P I D+EYD L+ + +P+L + P+ P +G Sbjct: 20 KMRTLIAQVRKHNNAYYVMDEPTISDNEYDQLRLSLIELEERYPELTQ---PDSPTASVG 76 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 S +V H I LSL I+N +DL++F+ R+ D N + +E K+DG + Sbjct: 77 DNPLPSFSQVQHDIAMLSLGNIFNYQDLQEFMRRVNDRLSDADRNP-EYEIEMKLDGLAV 135 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198 +++Y G+FV RGDG GED++ ++ I IP V+ + +++EVRGEV + K F Sbjct: 136 SLKYHNGQFVRGVTRGDGQMGEDITQNVKTINNIPLVIEAAQDIDVLEVRGEVLMPKAGF 195 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 LN G K +ANPRNAA+G LR+L+P +R L F+ + + + Q Sbjct: 196 KRLNRLAQENGDKTFANPRNAAAGSLRQLDPAVAASRPLAFYAYSVNQGLPEAITLQSAA 255 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF V++ R T + YY M R+ L ++IDG+V KVD+ +LQ QLG Sbjct: 256 LTWLKQLGFTVSDFER-VKTAQQVQDYYESMIQKRADLAFEIDGMVIKVDDLTLQSQLGA 314 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R PRW ++KF + T L I+ Q+GRTG LTPV +LEPV +GG ++N TLHN Sbjct: 315 LSREPRWATAYKFPAETVMTTLNSIEWQVGRTGQLTPVGKLEPVQVGGVTVSNVTLHNFG 374 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ L D+R GD V V RAG+VIPKV + + R + P+ CP+C Sbjct: 375 EIQRL-----------DVRAGDTVSVHRAGDVIPKVTRVWHDLRPEGTSAVTLPTHCPVC 423 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S VV P+ G+ +A RCTG L C AQQ E L HFVSR A +I+GLG++ L FF+ Sbjct: 424 DSPVVL---PE-GEALA--RCTGELFCPAQQQEALIHFVSRKAMDIDGLGERWLISFFEH 477 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ ADI+ L T + G+ SV+N+ +I + + +L RFI++L Sbjct: 478 G----IVKTVADIYHLNEHADELVT----LEKLGEKSVSNMLRAIEESKKTTLARFIYAL 529 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG A++LA+Y+ ++ ++ + D +L VP VG I A+ I F++ Sbjct: 530 GIRGVGETTAQNLAQYF-------GDLPELMGASID---ALEAVPDVGHITAELIYNFFR 579 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGTL--QKIQRHKAQEY 669 NI + AL + G + V + +E + V TGTL + R A+ + Sbjct: 580 AEHNIEVINALQQ-----AGVYWDKVEQQALDNLPLEGQTWVITGTLVASGMSRDDAKAH 634 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA VS +S KT ++ G+ GSKL KAQ LGV+++ E++FL ++ Sbjct: 635 LQALGAKVSGSVSAKTSALLAGEKAGSKLTKAQSLGVRVVLEDEFLKMI 683 >gi|170722763|ref|YP_001750451.1| NAD-dependent DNA ligase LigA [Pseudomonas putida W619] gi|254781396|sp|B1JC06|DNLJ_PSEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169760766|gb|ACA74082.1| DNA ligase, NAD-dependent [Pseudomonas putida W619] Length = 776 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 221/621 (35%), Positives = 345/621 (55%), Gaps = 44/621 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + +L E+ H+ YY +P + D+EYD L A+ P L P+ P Sbjct: 3 AESRIHALRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + +V H +P LSL + DLR+F R+ + ++ ++ EPK+DG Sbjct: 60 RVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQP--GAVDYSCEPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 +++ Y G+ V A RGDG +GED+SA +R + IP ++ P ++EVRGEV++SK Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVFMSK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN G K +ANPRNAA+G LR+L+ +R L F +G+G+ S + Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSASIGESH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L++++ G P++ +R A ++YY ++ R++LPY+IDG+V+KV+ + Q++ Sbjct: 238 IGILEQLKAWGLPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLASQRE 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T +LD++ Q+GRTG +TPVARL+PV + G ++NATLH Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L +R+GD V+++RAG+VIP+V+ +++ R DA+P PS C Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPVQVPSAC 406 Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S+ V R +T A +RC G LAC AQ + + H+VSR A +I+GLG+ Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ D I PAD++ LQ Q I + GF +VS L D+I + Sbjct: 467 KSVEQLV---DEGL-IGSPADLYKLQFDQ------IVGLEGFAEVSSKKLLDAIEASKRP 516 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL RFI++LGI VG E A+ LA+ S Q + ++ + +P +G + Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566 Query: 609 AQAIVEFYQNPRNICAVEALL 629 A I F+++ N +E LL Sbjct: 567 AYEIHNFFEDEHNCKVIEQLL 587 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 12/125 (9%) Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRH---EKNVSS--EIENKKLVFTGTLQK 660 A+A+ EF+++ N + L +++ + G H EK V+ + + V TGTL++ Sbjct: 656 AEAVREFFKDEAN----QKLARDIEAQLLAFGMHWNSEKKVAEGLPLAGQTWVLTGTLER 711 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R A+E + LGA V+ +S KT ++ G GSKL KA +LGVK+++E+ F+ L + Sbjct: 712 MSRDIAKEKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEDAFVVFLDE 771 Query: 721 YNTTL 725 + Sbjct: 772 QGIAI 776 >gi|148546832|ref|YP_001266934.1| NAD-dependent DNA ligase LigA [Pseudomonas putida F1] gi|190359274|sp|A5W0U0|DNLJ_PSEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148510890|gb|ABQ77750.1| DNA ligase, NAD-dependent [Pseudomonas putida F1] Length = 776 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 220/621 (35%), Positives = 344/621 (55%), Gaps = 44/621 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + L E+ H+ YY +P + D+EYD L A+ P L P+ P Sbjct: 3 AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + +V H +P LSL + DLR+F R+ + ++ ++ EPK+DG Sbjct: 60 RVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 +++ Y G+ V A RGDG +GED+SA +R + IP ++ P ++EVRGEVY+SK Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN G K +ANPRNAA+G LR+L+ +R L F +G+G+ SE Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSESIGDSH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L++++ G P++ ++ A ++YY ++ R++LPY+IDG+V+KV+ + Q++ Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T +LD++ Q+GRTG +TPVARL+PV + G ++NATLH Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L +R+GD V+++RAG+VIP+V+ +++ R DA+P PS C Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQDARPVEVPSEC 406 Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S+ V R +T A +RC G LAC AQ + + H+VSR A +I+GLG+ Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ D I PAD++ LQ Q + + GF +VS L D+I + Sbjct: 467 KSVEQLV---DEGL-IGSPADLYKLQFEQ------VVGLEGFAEVSTQKLLDAIEASKRP 516 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL RFI++LGI VG E A+ LA+ S Q + ++ + +P +G + Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566 Query: 609 AQAIVEFYQNPRNICAVEALL 629 A I F+++ N ++ LL Sbjct: 567 AYEIHNFFEDEHNQKVIQQLL 587 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 13/121 (10%) Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRH---EKNVSS--EIENKKLVFTGTLQK 660 A A+ EF+++ N + L +++ + G H EK V+ + + V TGTL++ Sbjct: 656 ADAVREFFKDEAN----QKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLER 711 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL-FLLQ 719 + R A++ + LGA V+ +S KT ++ G GSKL KA +LGVK+++E+ F+ FL + Sbjct: 712 MSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFLAE 771 Query: 720 Q 720 Q Sbjct: 772 Q 772 >gi|212703192|ref|ZP_03311320.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098] gi|212673458|gb|EEB33941.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098] Length = 729 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 257/730 (35%), Positives = 397/730 (54%), Gaps = 68/730 (9%) Query: 8 PIEALSI-----EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 P + LS+ ++ ++ ++ L + +H+ Y+ KP+I D +YDAL R A+ + Sbjct: 43 PADPLSLPEPPRDRPQERMAWLTTILEHHNYLYHTLDKPVISDDQYDALFRELKALEEDY 102 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P P+ P ++GG + L K H L+ +++ E+ ++F+ R+ R Sbjct: 103 PQW---RSPHSPTLRVGGGLLGGLPKQRHRQRMYGLDNVFSAEEWQEFVARMQR---ALP 156 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLN 180 + + F +PK+DG + I YE G A RGDG GE V+ +R I T+P L + Sbjct: 157 EAPLAFWCDPKLDGLALEIIYEDGVLQQALTRGDGEEGEVVTEAVRTIRTVPLRLRGTGP 216 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFF 239 PE +EVRGEV I K DF A+N+ ++G+K ANPRNAA+G LR+L+ + + L F Sbjct: 217 FPERLEVRGEVVIYKKDFAAINERRESLGQKLLANPRNAAAGALRQLDVANTQQMPLRFL 276 Query: 240 VHGLGKTSEIFAKG---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 + LG+ A+ Q+E+ ++R GF + + +Y ++ R+ P Sbjct: 277 AYSLGEARWGQAEPCHFQHELAARLRDYGFLTPPDGKLCADPAAVEAYVESVRQGRADFP 336 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 +IDG V K D+ Q+ LG AR+PR+ I+ KF Q TRL I+IQ+GRTG+LTPVA Sbjct: 337 MEIDGAVAKQDDLEAQEALGFTARAPRFAIAFKFPAMQVHTRLTGIEIQVGRTGVLTPVA 396 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 +LEPV +GG ++T ATLHNED I +D+RVGD V+V+RAG+VIP+VV Sbjct: 397 QLEPVAVGGVMVTRATLHNEDEIL-----------AKDVRVGDTVIVQRAGDVIPEVVGP 445 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 ++ ER A+PF FP CP+C R+ G+ AA RC G ++C A +L + HFV Sbjct: 446 VLEERPSGARPFEFPHICPVCGEPAHRE----PGE--AAWRC-GNISCPAVRLRSICHFV 498 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDV 533 S+ +++G+G++ ++ S + P +F L ++++L F GDV Sbjct: 499 SKAGLDVQGVGQKWIEQLVSSG----HVTSPKQLFRL---------TVQDLLPFDRMGDV 545 Query: 534 SVTNLYDSI-NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 + D+ + R N +L R I +LGIRHVG + AR LA ++ A Sbjct: 546 LARKIVDAFDDARHNATLARLISALGIRHVGEQTARMLAAHFYDMDALAAA--------- 596 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIE 648 D L+ +P VG +A +I F+++P N + EA L V+ + E ++ Sbjct: 597 -DTQRLLELPDVGPEVASSIRSFFESPANQHMLAGLREAGLWPVA-AAEPAEAAGEGPLQ 654 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K ++FTGTL + R KA++ GAVV +S+K DI++VG+NPGSKLEKAQ LG+ + Sbjct: 655 GKNILFTGTL-SMARGKAKQLAEAAGAVVLGSVSKKLDILVVGENPGSKLEKAQSLGITV 713 Query: 709 MNEEQFLFLL 718 ++E FL LL Sbjct: 714 LDEAAFLDLL 723 >gi|254994698|ref|ZP_05276888.1| DNA ligase [Anaplasma marginale str. Mississippi] Length = 624 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 224/573 (39%), Positives = 332/573 (57%), Gaps = 38/573 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQAR+ L+ L ++ +HD Y+ P + D +YD L + + FPD+++ +D Sbjct: 2 LEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDISQYDDY-- 59 Query: 74 PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 + +G S F KV H P LSLE + ++D+ KFITR+ RF + + D+ + + E Sbjct: 60 -ADVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCEL 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + Y GK A RG+GH GED++ + +P L + PE++EVRGE+Y Sbjct: 119 KMDGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQLD-SAPEVLEVRGEIY 177 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + DF L G +ANPRNAA+G +R+LN + R L++ + + FA Sbjct: 178 MHHEDFEKLR------GSCNFANPRNAAAGSIRQLNQKIVEERNLSYVAYS--AVNSTFA 229 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E+L+++ GF N V + +++YN + + RS L YDIDG+VYKV+ + Sbjct: 230 T-QQEILKQLDEWGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSTNF 288 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 QK LG +SPRW I+HKF +A T+LLDI +Q+GRTG++TP+A LEP+NIGG +++ A Sbjct: 289 QKLLGATGKSPRWAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRA 348 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN + I+ +D+R+GD V+VKRAGEVIP+VVD+ R Q F FP Sbjct: 349 SLHNLNEIE-----------RKDVRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFP 397 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S CP C S++ R+ A RC L+C AQ LER+KHFVSRD NI GLG +Q+ Sbjct: 398 SHCPSCGSKLHREPGE------VALRCVAELSCKAQALERVKHFVSRDGLNIMGLGAKQI 451 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +FF I ADIF+L+ + E+ G+G+ SV NL +I + L Sbjct: 452 EFFCNHG----LIGSIADIFSLEEKLHGINLDTEH--GWGEKSVANLIAAIRNSATVRLS 505 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 FIF+LGIR +G A+ +A++Y SY+N+ Q + Sbjct: 506 NFIFALGIRFIGVGAAKLIAEHYRSYKNWHQAM 538 >gi|319892947|ref|YP_004149822.1| DNA ligase [Staphylococcus pseudintermedius HKU10-03] gi|317162643|gb|ADV06186.1| DNA ligase [Staphylococcus pseudintermedius HKU10-03] Length = 667 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 243/708 (34%), Positives = 382/708 (53%), Gaps = 62/708 (8%) Query: 21 LSSLEQEISYHDDCYYQYS-------KPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +SS+ Q + +QY+ P + DSEYD L I P+L S+ P Sbjct: 1 MSSIAQRVEILHKLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIETKHPELKTSDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GGE S KV H P LSL +N DLRKF R+ + + + E K Sbjct: 60 --VRVGGEAQSSFEKVNHDTPMLSLSNAFNEADLRKFDQRV-----RDAVGEVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y GK V RGDG +GED++ ++ I IP L I EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGKLVQGLTRGDGTTGEDITENLKTIYAIPLTLDKKIS--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+ A +P+ANPRNAA+G LR+L+ R L+ F++ + +E+ A Sbjct: 171 PRQSFLKLNEAKAARDEQPFANPRNAAAGSLRQLDSKLAAARKLDIFLYSINDFTELDAS 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N+ + T ++ Y + + R LPYDIDG+V KV+ Q Sbjct: 231 SQSEALDELDELGFKTNHEREKVKTIDEVLEYIKKWTNQREQLPYDIDGIVIKVNHLEHQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGFTQKSPRWAIAYKFPAEEVITELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I +DIR+GD V++K+AG++IP+VV +I++ R A+ + P+ Sbjct: 351 LHNEDLIH-----------EKDIRIGDSVVIKKAGDIIPEVVRVILDRRPEGAETYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR G++ A RC C AQ +E L HFVSR A NI+GLG + ++ Sbjct: 400 HCPSCDHELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIE 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + I+ ADIF L + ++ G+ L D+I + SLE Sbjct: 453 QLYTHA----LIKDVADIFYLTKEDLLPLERM------GEKKAQKLIDAIETSKARSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + ++ ++ D+ L+ + VG+ +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKY-------ETMDRLLTVTEDE---LVEIYDVGEKLAQSL 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQKIQRHKAQ 667 V + +N +I A+ L+ ++ + +S E K +V TG LQ++ R++A Sbjct: 553 VTYLEN-EDIRALIEKLQSKGVNMTFKGQKLSQIEGHPEFAGKTIVLTGKLQQMTRNEAT 611 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 ++ GA V++ +++ TD++I G++ GSKL KAQ LG I E+ F+ Sbjct: 612 NWLKLQGAKVTSSVTKSTDLVIAGEDAGSKLTKAQSLGTMIWTEQDFI 659 >gi|323464000|gb|ADX76153.1| DNA ligase, NAD-dependent [Staphylococcus pseudintermedius ED99] Length = 667 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 243/708 (34%), Positives = 382/708 (53%), Gaps = 62/708 (8%) Query: 21 LSSLEQEISYHDDCYYQYS-------KPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +SS+ Q + +QY+ P + DSEYD L I P+L S+ P Sbjct: 1 MSSIAQRVEILHKLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIETKHPELKTSDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GGE S KV H P LSL +N DLRKF R+ + + + E K Sbjct: 60 --VRVGGEAQSSFEKVNHDTPMLSLSNAFNEADLRKFDQRV-----RDAVGEVEYMCELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y GK V RGDG +GED++ ++ I IP L I EVRGE Y+ Sbjct: 113 IDGLAVSLKYVDGKLVQGLTRGDGTTGEDITENLKTIYAIPLTLDKKIS--FEVRGEAYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 + FL LN+ A +P+ANPRNAA+G LR+L+ R L+ F++ + +E+ A Sbjct: 171 PRQSFLKLNEAKAARDEQPFANPRNAAAGSLRQLDSKLAAARKLDIFLYSINDFTELDAS 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF N+ + T ++ Y + + R LPYDIDG+V KV+ Q Sbjct: 231 SQSEALDELDELGFKTNHEREKVKTIDEVLEYIKKWTNQREQLPYDIDGIVIKVNHLEHQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +++G +SPRW I++KF ++ T LLDI++ IGRTG++TP A LEPV + G ++ A+ Sbjct: 291 EEMGFTQKSPRWAIAYKFPAEEVITELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I +DIR+GD V++K+AG++IP+VV +I++ R A+ + P+ Sbjct: 351 LHNEDLIH-----------DKDIRIGDSVVIKKAGDIIPEVVRVILDRRPEGAETYHMPT 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +VR G++ A RC C AQ +E L HFVSR A NI+GLG + ++ Sbjct: 400 HCPSCDHELVR----IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIE 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + I+ ADIF L + ++ G+ L D+I + SLE Sbjct: 453 QLYTHA----LIKDVADIFYLTKEDLLPLERM------GEKKAQKLIDAIETSKARSLEN 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+G + ++ LA+ Y + ++ ++ D+ L+ + VG+ +AQ++ Sbjct: 503 LLFGLGIRHLGVKASQVLAEKY-------ETMDRLLTVTEDE---LVEIYDVGEKLAQSL 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVFTGTLQKIQRHKAQ 667 V + +N +I A+ L+ ++ + +S E K +V TG LQ++ R++A Sbjct: 553 VTYLEN-EDIRALIEKLQSKGVNMTFKGQKLSQIEGHPEFAGKTIVLTGKLQQMTRNEAT 611 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 ++ GA V++ +++ TD++I G++ GSKL KAQ LG I E+ F+ Sbjct: 612 NWLKLQGAKVTSSVTKSTDLVIAGEDAGSKLTKAQSLGTMIWTEQDFI 659 >gi|124267002|ref|YP_001021006.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1] gi|166215820|sp|A2SGT2|DNLJ_METPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|124259777|gb|ABM94771.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1] Length = 677 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 246/709 (34%), Positives = 371/709 (52%), Gaps = 57/709 (8%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + L +++ YH YY P I D+EYD L A+ A P L P+ P ++ G Sbjct: 13 AQLREQLEYHAHRYYVLDAPEIPDAEYDRLFTELQALEAAHPGL---RTPDSPTQRVIGA 69 Query: 82 MNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQ-KKDDNSIFFTLEPKIDGTM 138 + L V H++P LS+ E KF + + D + + E K DG Sbjct: 70 VLEGLSAVRHAVPMLSIKTETDTTPTGALKFDAAVRNALKLPPDAPPLRYAAELKFDGLA 129 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I +RY+ G+ V AA RGDG +GEDV+ + I ++P+ L ++EVRGEV++ ++DF Sbjct: 130 INLRYQAGRLVQAATRGDGETGEDVTHTVGTIESVPKQLRGITAPVLEVRGEVFMRRDDF 189 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI-FAKGQYE 256 ALN+ G K + NPRNAA+GI+R+L+ + R L+FF +GLG Sbjct: 190 EALNERQREAGLKTFVNPRNAAAGIVRQLDASIARQRPLSFFAYGLGDVQGWDVPPTHAG 249 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L + LG PV+ + +++ + + R LP+DIDG+VYKVDE +LQ+QLG Sbjct: 250 LLDALAALGLPVDAHRTVVEGGEALAAFHAGIAAERDALPFDIDGVVYKVDERALQQQLG 309 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++R PRW ++HK+ ++ ST+L I+IQ+GRTG LTPVA+L+PV +GG ++NATLHN Sbjct: 310 FKSREPRWAVAHKYPAQEQSTQLAGIEIQVGRTGKLTPVAKLQPVFVGGTTVSNATLHNR 369 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 ++ R G IR+GD V+V+RAG+VIP+VV + R F P CP+ Sbjct: 370 FELR---------RKG--IRIGDTVIVRRAGDVIPEVVGRVPVPRTAYIPNFRMPRACPV 418 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S+ +R+ + +RC+GGL C+AQ+ + L HF R +IEGLG + ++ Sbjct: 419 CGSQALRE------RGSVDYRCSGGLFCAAQRKQALLHFAGRRMMDIEGLGDKLVEQLVD 472 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I TL + K+ + GD S NL ++ + +L RF+FS Sbjct: 473 G----------GIIRTLPELYRLGVAKLVALERMGDKSAANLVAALEASKATTLARFLFS 522 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+G A+ LA+++ + + ND VG ++AQ++ F+ Sbjct: 523 LGIRHIGEATAKDLARHFGALDRVMDASVEQLLEVND----------VGPVVAQSLRTFF 572 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSE-------IENKKLVFTGTLQKIQRHKAQEY 669 P N VE L + G H S E + K V TGTL + R A+E Sbjct: 573 DQPHNREVVEQLR-----AAGVHWDEHSGEADLTPRPLAGKTFVLTGTLPSLGREAAKEL 627 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G V+ +S+KTD ++ G+ GSKLEKAQ LGV +++E LL Sbjct: 628 IEAAGGKVAGSVSKKTDYVVAGEEAGSKLEKAQALGVAVIDEAALRALL 676 >gi|258508011|ref|YP_003170762.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG] gi|257147938|emb|CAR86911.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG] gi|259649339|dbj|BAI41501.1| DNA ligase [Lactobacillus rhamnosus GG] Length = 674 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 253/723 (34%), Positives = 391/723 (54%), Gaps = 65/723 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A E++ L ++++ YY P + D+ YD R A+ AFP L Sbjct: 5 PAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLVT 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ Q +++ Sbjct: 65 ---PDSPTQQVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QANVGHAVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE G+ V + RGDG+ GEDV+ + I ++P+ +L P +EV Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNVGEDVTKNVLTIASVPK--TLKRPLSLEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245 RGE Y+ K F LN A G P+ANPRNAA+G LR+LNP IT R L+ F++ L Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPK-ITAGRELDTFIYTLID 234 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K Q+E + M+ LGF N A+ I +Y + S R LPY IDG+V K Sbjct: 235 ADRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 295 VNDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V +R + Sbjct: 355 TTVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVKKRPANT 403 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P P CP C ++V L+ + A RC + C AQ E+L HF SR+A NI+G Sbjct: 404 PPAPIPEKCPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDG 456 Query: 486 LGKQ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 LG + QL + ++ D+ L R + T +E + F + S+ NL ++I Sbjct: 457 LGPKIIAQLQ----------AKKLVTDVADLYR---LTATDLEKLDKFKEKSINNLLNAI 503 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 N R S+ER IF LGIRHVG + AR LA+++ S ++ ++A + D + +P Sbjct: 504 NNSRQNSVERLIFGLGIRHVGGKAARILAEHFGS-------LDELMAADQD---QVAAIP 553 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTG 656 +G IA+A+V +++ VE L L+ P+ S + K +V TG Sbjct: 554 NIGPTIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPT---RPAVSDSFVSGKTVVITG 610 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + R + + + QLGA V+ +S+KTD++I GD GSKL KAQ L V IM+E L Sbjct: 611 KFAEFSRPELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLT 670 Query: 717 LLQ 719 L+ Sbjct: 671 NLK 673 >gi|167039197|ref|YP_001662182.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X514] gi|256752857|ref|ZP_05493696.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1] gi|300913208|ref|ZP_07130525.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561] gi|307723778|ref|YP_003903529.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X513] gi|254781440|sp|B0K3S1|DNLJ_THEPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166853437|gb|ABY91846.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X514] gi|256748259|gb|EEU61324.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1] gi|300889893|gb|EFK85038.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561] gi|307580839|gb|ADN54238.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X513] Length = 662 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 248/707 (35%), Positives = 399/707 (56%), Gaps = 51/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L ++I+YH+ YY +P I D EYD L R + +P+L + P+ P + Sbjct: 4 KERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEL---KTPDSPSQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE TH +P LSL ++ +LR F R+ ++ + + +E KIDG Sbjct: 61 VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRV-----REAVGDVEYVVELKIDGL 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YEKG F + RGDG GE+V+ ++ I +IP L ++ + VRGEV++ + Sbjct: 116 SVELIYEKGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVSLV--VRGEVFMPRAS 173 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+E +G +ANPRNAA+G LR+L+P R L+ F+ L K K E Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ + GF + ++ + ++ E++++R LPYDIDG V KV++ ++ LG Sbjct: 234 TLEFLNEQGFKIIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + A+ PRW I+ K+ ++ T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLHNE 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYIK +DIR+GD V+V++AGE+IP+VV+++ ER + F P CP Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VR L A RCT GL C AQ L + HF S+DA +IEGLG ++ Sbjct: 403 CGALAVRLLGE------AIRRCT-GLNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLL- 454 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 S+ +I AD++ L+ ++ GD SV NL ++I + + L+R +F Sbjct: 455 SKGLIHNI---ADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G++ A+ +A+++ + ++NI+ +D+ L P +G +A++IV F+ Sbjct: 506 LGINLIGSKAAQVIAEHF-------KTMDNIMKAKFEDFTQL---PDIGPKMARSIVSFF 555 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 +N+ +E LK ++ + K VS+ E K V TG L+ R +A + + G Sbjct: 556 AEKQNVEIIEK-LKNAGVNMKKLSKGKVSNIFEGKTFVLTGALESYTREEATRMIEERGG 614 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 V+ +S+KTD ++VG +PGSKL+KAQ+LG+KI++E+QF +L+ N Sbjct: 615 KVTNSVSKKTDYVLVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGEN 661 >gi|309389839|gb|ADO77719.1| DNA ligase, NAD-dependent [Halanaerobium praevalens DSM 2228] Length = 670 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 245/718 (34%), Positives = 402/718 (55%), Gaps = 56/718 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ E+A K++++L+++I H+ Y+ P I D+E+D L + + FPDL +ED Sbjct: 4 LNKEKASKKITALKEKIRKHEYKYFVLDDPSISDAEFDQLMQELIKLESEFPDLI-TED- 61 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++GG + KV HS LSL+ +N EDL +F R+ + + +D + +E Sbjct: 62 -SPTQRVGGAVLDEFKKVKHSTKMLSLDNAFNKEDLIEFDQRVQKNLKGEDYQ---YVVE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +RY G F A RG+G GED+S ++ I ++P L + +++RGE+ Sbjct: 118 HKIDGLSAVMRYNNGTFELGATRGNGEVGEDISNNMKTIRSLP--LKIEEKAEMQLRGEI 175 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y++K++F LN + + P+ANPRNAA+G +R+L+ R L+ ++ L S+ Sbjct: 176 YLAKSEFKRLNKQRLENDESPFANPRNAAAGSVRQLDSKIAAERSLSILIYDLISHSKRE 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K E+ ++ GF +N + A+ ++ + R L ++IDGLV K+++ + Sbjct: 236 FKTHLEVFAYLKKQGFKIN-WYQAASNIESVIEICQDWHQKREKLDFEIDGLVIKINDLA 294 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L+K+LG ARSPRW I++KF +Q +T++ DI+I +GRTG LTP A L+PV + G+ ++ Sbjct: 295 LRKKLGNTARSPRWAIAYKFPAQQKTTKIKDIEISLGRTGALTPTAILDPVELAGSTVSR 354 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED IK +DI++GD VLV++AG+VIP+VV +I +R + F Sbjct: 355 ATLHNEDEIK-----------RKDIKIGDIVLVQKAGDVIPEVVKVITEKRDGSEKEFEM 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C V+R P+ A RCT ++C AQ+ E + HFVSR+A NI+G+G Sbjct: 404 PKNCPVCGGEVIR---PEGE---AVSRCT-NISCPAQRKESILHFVSRNAMNIDGVGPAL 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + I AD++ L++ + ++++ G+ S N+ +I + Sbjct: 457 IEQLLANN----LIEDYADLYFLKQ------SHLKDLERMGEKSSENVIKAIEASKKREF 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R +++LGIRHVG AR LA+ + S I+ + + DD L + +G +IA Sbjct: 507 FRVLYALGIRHVGIGAARILAENFNS-------IDELKSAKIDD---LKNISEIGPVIAD 556 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTLQKIQRHKA 666 +IV F+Q NI LL + + R + S E EN K VFTG+L R + Sbjct: 557 SIVNFFQERHNI----DLLSRLKQAGIRLKNKASQENENFLDQLKFVFTGSLNDFTRSEI 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 ++ V G + +S KTD +++GDNPGSK +KAQ LG++I+NE +F ++++ ++ Sbjct: 613 KDLVENAGGRAVSSVSSKTDYLVIGDNPGSKYDKAQSLGIEILNESEFKEMIKKKRSS 670 >gi|86608809|ref|YP_477571.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)] gi|123724461|sp|Q2JLU3|DNLJ_SYNJB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86557351|gb|ABD02308.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)] Length = 686 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 239/706 (33%), Positives = 382/706 (54%), Gaps = 59/706 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E+ +EL +L Q+ S YY + PI+ DS YD L R + A+P+L P+ Sbjct: 5 LEERARELRTLLQKASI---AYYVHDAPILEDSVYDRLYRELQELERAYPELV---TPDS 58 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK------KDDNSIF 127 P ++G + V H IP SLE +N E+L ++ R+ R + + + + Sbjct: 59 PTQRVGEKPAEHFPTVFHRIPLYSLENAFNPEELEEWQERLLRVLGRAPVPDSRTEGELE 118 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186 + E KIDG + + Y +G A RGDG +GED++ +RAI +IP R+ + + P ++E Sbjct: 119 YVCELKIDGAALALTYIEGLLERGATRGDGQAGEDITPNVRAIRSIPLRLATADPPPVLE 178 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-- 243 VRGEVY++ +F +N E + G P+ANPRN A+G LR+L+ + R L+FF + L Sbjct: 179 VRGEVYLALAEFERINQERRSAGDPPFANPRNCAAGTLRQLDSRVVAARKLSFFAYALHW 238 Query: 244 --GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G + + Q++ LQ+++ LGFPVN + ++ +Y + + LPY DG Sbjct: 239 PEGWPAGDPPQTQWQCLQQLKELGFPVNPLSQVCRGLGEVIQFYERWRG--AQLPYASDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V K++ LQ++ G + PRW I+ K+ ++ TR+ I +GRTG +TPVA LEPV Sbjct: 297 VVVKLNSLRLQEEAGFTQKFPRWAIALKYPAQEVPTRIRAIVASVGRTGAVTPVAELEPV 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G L++ A+LHN D ++ L D+ +GD +V++AGE+IP+VV I+ R Sbjct: 357 PLAGTLVSRASLHNADRLREL-----------DVHIGDTAIVRKAGEIIPEVVGILKELR 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 DA P+S PS CP C + +VR G+ V RC C A+ +L+H+ SRDA Sbjct: 406 PADAVPYSLPSQCPECHTPLVR----PPGEAVT--RCPNP-ECPAKLRGQLQHWASRDAL 458 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG+++ +S +R AD++ L Q ++ + G G S L + Sbjct: 459 DIEGLGEKRAAQLVES----LGVRTVADLYRLTPEQ------LQGLEGMGSRSSQKLVQA 508 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I + R ER ++ LGI HVG A+ LA ++ + + AQ IA Sbjct: 509 IQRSRQQPWERVLYGLGIPHVGVVTAQILAGHFPTPELLAQASAETIAQIYG-------- 560 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQK 660 +G +A+A+V ++ P + ++ L P++ + E S+I KK V TGTL Sbjct: 561 --IGAEVAEAVVAWFAEPAHRRLLQELQALGIPALPQQENPAVSQILAGKKFVITGTLPT 618 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + R +A+ ++ G V+A +SR+TD ++VG +PGSKLE+AQQLG+ Sbjct: 619 LSRQQAKAWIESRGGKVTASVSRQTDYVVVGSDPGSKLEQAQQLGI 664 >gi|148544657|ref|YP_001272027.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016] gi|184154010|ref|YP_001842351.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112] gi|227363780|ref|ZP_03847887.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3] gi|325682991|ref|ZP_08162507.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A] gi|209572830|sp|A5VLG6|DNLJ_LACRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781354|sp|B2G8T9|DNLJ_LACRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148531691|gb|ABQ83690.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016] gi|183225354|dbj|BAG25871.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112] gi|227071137|gb|EEI09453.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3] gi|324977341|gb|EGC14292.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A] Length = 680 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 247/721 (34%), Positives = 396/721 (54%), Gaps = 56/721 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M ++Q P++ L++++A+ E+ L +++ YY+ P + D YD +R + Sbjct: 1 MSEKQ-TPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP L ++ P ++GG L KV H IP LS+ +++IE+L F R Q+ Sbjct: 60 QFPQLVSADSPT---QRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQR----QQE 112 Query: 121 KDDNSIF--FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 D + + LE KIDG +++ YE GK V + RG+G GEDV+A +R I ++P Sbjct: 113 NRDVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGTIGEDVTANVRTIKSVP--AE 170 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLN 237 L P IEVRGE Y+ K F LN + A G +ANPRNAA+G LR+L+P R L+ Sbjct: 171 LPEPLSIEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELD 230 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F++ + + +I K Q E L +MR LGF VN R + I Y E + R L Y Sbjct: 231 TFMYYVPEYQKIGVKTQAEALDRMRELGFNVNPNNRVVHNRDEIEKYIEEYTAQRDKLTY 290 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 IDG+V KV++ + LG + PRW I++KF ++ +T + DI +GRTG +TP A Sbjct: 291 GIDGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAV 350 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 ++PV + G ++ A+LHN DY++ +DIR+GD V + +AG++IP++ + Sbjct: 351 MDPVQLAGTTVSRASLHNPDYLR-----------EKDIRIGDTVYLHKAGDIIPEISKVD 399 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R D+ + P+ CP+C S +V G++ A RC + C AQ E L HF S Sbjct: 400 LTKRPADSVEYEIPTKCPVCGSELVH----LDGEV--ALRCINPM-CPAQIKEGLAHFAS 452 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R+A NI+GLG + ++ + E I A ++ L Q + K FG+ S N Sbjct: 453 RNAMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLTLDK------FGEKSTAN 502 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L SI+ RN S+ER +F LGIRHVGA+ AR + +++ ++++++ + D+ Sbjct: 503 LLTSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHF-------GDLDSLMKADADE--- 552 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLV 653 + + +G I ++IV ++ N + + ++ L+EV + R N SE +++V Sbjct: 553 ISAISGIGPTIGESIVTYFANQQVVKLIDE-LREVGVNFAYLGSRSNANPDSEWNGRRVV 611 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TG L ++ R +A+ ++ GA V+ +S+KTDI+I G + GSKL KAQ LG+ + NE+Q Sbjct: 612 LTGKLTEMTRGEAKSWLENHGAKVTESVSKKTDIVIAGADAGSKLTKAQNLGIDVWNEQQ 671 Query: 714 F 714 F Sbjct: 672 F 672 >gi|171059186|ref|YP_001791535.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6] gi|254781357|sp|B1Y6D4|DNLJ_LEPCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|170776631|gb|ACB34770.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6] Length = 768 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 262/756 (34%), Positives = 388/756 (51%), Gaps = 91/756 (12%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ A + L + +H YY P + D+EYD L + AI +P L ++ P Sbjct: 31 LQTAAARAAWLRSTLQHHAHLYYVLDAPELPDAEYDRLFQELQAIEAMYPALRTADSPT- 89 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE--DLRKFITRIYRFWQKKDDNS-IFFTL 130 ++ G++ V H++P LS+ + E F R+ R + DD I + Sbjct: 90 --QRVLGQVRDGFVVVRHAVPMLSIRTETDTEASGAVAFDARVRRELELPDDAPPISYAT 147 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---------- 180 E K DG I +RYE G V AA RGDG SGEDV+ IR I IP L Sbjct: 148 ELKFDGLAINLRYEHGVLVQAATRGDGESGEDVTQNIRTIGQIPLRLRWAPTLGADAHSL 207 Query: 181 ---------------------IPEIIEVRGEVYISKNDFLALND---EMIA---VGRKPY 213 P ++EVRGEVY+ ++DF ALN+ E IA G K + Sbjct: 208 PPEGARFALGRPGGETGAPDLAPAVLEVRGEVYMRRDDFEALNERQRERIARGDKGEKTF 267 Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQKMRCLGFPVNNG 271 NPRNAA+G +R+L+P R L+FF +GLG+ +L + G PV Sbjct: 268 VNPRNAAAGAVRQLDPAIAAQRPLSFFAYGLGEVQGWALPHTHAGLLDALAAAGLPVCAE 327 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 G+V+++ + ++R +L +DIDG+VYKVD +LQ++LG R PRW ++HK+ Sbjct: 328 RAVVQGADGLVAFHQRIGALRDSLAFDIDGVVYKVDSLALQQRLGFVTREPRWAVAHKYP 387 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ TRLL I+IQ+GRTG LTPVARLEPV +GG ++NATLHNED + Sbjct: 388 AQEQMTRLLGIEIQVGRTGKLTPVARLEPVFVGGTTVSNATLHNEDEAR----------- 436 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFS----FPSFCPICQSRVVRDLN 446 +D+RVGD V+V+RAG+VIP+VV +++ +R D +PF CP+C S + R Sbjct: 437 RKDVRVGDTVIVRRAGDVIPQVVGVVLEQRPDDVGEPFDLYQRLGGRCPVCGSAIAR--- 493 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 G+ A RCTGGL C+AQ+ + + HF SR +IEGLG + +D A IR Sbjct: 494 -PEGE--ADWRCTGGLFCAAQRKQAILHFASRRMMDIEGLGDKLVDQLVD----AGVIRT 546 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 +++ L K+ + G+ S NL ++ K + +L RF+FSLGIR VG Sbjct: 547 LPELYKL------GVAKLTALERMGEKSAVNLVAALEKSKQTTLARFLFSLGIRQVGEAT 600 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 A++LA+++ + ++ ++ + D L VP VG I+A +I F+ P N VE Sbjct: 601 AKALARHFGA-------LDRVMDASVD---QLQAVPDVGPIVALSIRTFFDQPHNREVVE 650 Query: 627 AL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 L + + K LV TGTL + R A++ + G VS +S Sbjct: 651 QLRAAGIHWAEHEASAAADAAELPLAGKTLVLTGTLPTLGRDAAKDLIEAAGGKVSGSVS 710 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +KT ++ G GSKL+KA++LG+ I++E L LL Sbjct: 711 KKTHFVVAGAEAGSKLDKARELGLVILDEAGLLALL 746 >gi|320450863|ref|YP_004202959.1| DNA ligase, NAD-dependent [Thermus scotoductus SA-01] gi|320151032|gb|ADW22410.1| DNA ligase, NAD-dependent [Thermus scotoductus SA-01] Length = 674 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 251/715 (35%), Positives = 390/715 (54%), Gaps = 58/715 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E+ARK ++ L I YH+ YY P I D+EYD L R + FP+L + P Sbjct: 1 MTLEEARKRINELRDLIRYHNYRYYVLDAPEISDAEYDRLLRELKELEERFPEL---KSP 57 Query: 72 NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + + F+ + H SL+ + +E++R F RI R +K +T+ Sbjct: 58 DSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFTLEEVRTFEERIERALGRK--GPFVYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G V+ A RGDG +GE+V+ + IPTIPR L +PE +EVRGE Sbjct: 116 EHKVDGLSVNLYYEEGILVWGATRGDGETGEEVTQNLLTIPTIPRRLK-GVPERLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247 VY+ FL LN+E+ G K + NPRNAA+G LR+ +P R F+ GLG Sbjct: 175 VYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSLRQKDPRITARRGLRATFYALGLG-LE 233 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E K Q ++L +R GFPV +G +A G+ Y R +LP++ DG+V K+D Sbjct: 234 ESGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVKLD 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E SL ++LG AR+PR+ I++KF ++ TRLL + Q+GRTG +TPV LEPV I G+ Sbjct: 294 ELSLWRELGYTARAPRFAIAYKFPAEEKETRLLQVVFQVGRTGRVTPVGILEPVFIEGSE 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ TLHNE YI+ L D+R+GD VLV +AG VIP+V+ ++ +R + +P Sbjct: 354 VSRVTLHNESYIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKEKRTGEERP 402 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +P CP C R+V K GK+ HRC L C A++ E ++H+ SR A +I GLG Sbjct: 403 IRWPETCPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIGGLG 453 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ + + D+ L R ++ +E + G S NL I + R+ Sbjct: 454 EKLIEKLLEKG-------LVKDVADLYRLKEEDLVGLERM---GKKSAGNLLRQIEESRS 503 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 LER +++LG+ VG +AR+LA ++ + + + + VG++ Sbjct: 504 RGLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEASLEELLQVEE----------VGEL 553 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQRHK 665 A+ I E Q+P A L++ + + E E K L F TG L + R + Sbjct: 554 TARGIYETLQDP----AFRDLIRRLKEAGVEMEAKERGEEALKGLTFVITGELSR-PREE 608 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + +LGA V+ +SRKT ++VG+ PGSKLEKA+ LGV + EE+ L+++ Sbjct: 609 VKALLRRLGAKVTDSVSRKTSYLVVGEAPGSKLEKARALGVPTLTEEELYRLIEE 663 >gi|163782033|ref|ZP_02177032.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1] gi|159882565|gb|EDP76070.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1] Length = 715 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 242/715 (33%), Positives = 390/715 (54%), Gaps = 54/715 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+A++ + L + I+YHD YY + P+I D EYD L R + +P+L P+ P Sbjct: 30 EEAQEYVQELREVINYHDYKYYVQASPVISDYEYDQLFRALRDLEKKYPELI---TPDSP 86 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++ E+ + V H P LSL+ + E+LR F R+ + + +++EPK Sbjct: 87 TQRVASEITGAFPTVRHYTPMLSLDNAYTEEELRDFDRRVREL---TGLDVVEYSVEPKY 143 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVY 192 DG I + Y FV A RGDG +GED++ +R + TIP + I IE+RGEV Sbjct: 144 DGAGIALLYRDDLFVRGATRGDGETGEDITNNLRTVRTIPLKAEFSRFGIRLIELRGEVL 203 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG--KTSEI 249 I++ +F +N+E + G P+ANPRNAA+G +R NP ++ R L+ V+ + + Sbjct: 204 INREEFRKMNEERLEEGLPPFANPRNAAAGSIRLQNPAEVAKRKLDAVVYQVSYVEPESR 263 Query: 250 FAKGQYEMLQKMRCLGF--PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 YE ++ + LGF P + ++ ++ Y E + R PY+IDG+V KV+ Sbjct: 264 HPNTHYEAIEMLHLLGFKTPFPD-MKLCKGIDEVIEYCREWEEKREEYPYEIDGMVVKVN 322 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LG + PRW I+ KF KQA+T+L+D+ Q+GR G +TPV +LEPV IGG + Sbjct: 323 RKEYYEVLGFTSHHPRWAIAFKFKPKQATTKLIDVVFQVGRVGTITPVGKLEPVEIGGVV 382 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +++ +L NED+I+ +DIR+GD VLV+RAG+VIP VV++I R D P Sbjct: 383 VSSVSLFNEDFIR-----------EKDIRIGDLVLVERAGDVIPYVVEVIKEARDGDEVP 431 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 FP CP C S++V+ G++ A RC ++C AQ + RLKH+ SR+A +I GLG Sbjct: 432 IEFPDRCPSCGSKLVK----LPGEV--AWRCI-NISCPAQVVLRLKHWGSREAMDIRGLG 484 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ ++ D++ L+ + + GF + S NLY++I + +N Sbjct: 485 EATSKALYEKG----LVKDVGDLYYLK------VVDLMKLPGFAEKSAMNLYNAIQESKN 534 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L+R ++ LGIR+VG A+ L +Q I++I + L + +GD+ Sbjct: 535 RGLDRVLYGLGIRYVGLTTAKKL----------SQVIDSIWDLRDMPVEKLEAIEGIGDV 584 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A++I EF+ N+ +E L + + R + ++ VFTGTL+ R +A Sbjct: 585 VARSIKEFFSREENVKVIEKLDR-AGVKLRRTKLEKEGPLKGMVFVFTGTLRCCSRERAG 643 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQY 721 E V LG S ++ KT ++VG+ PG +KL +A+QLG+K++NEE FL +++ Y Sbjct: 644 ELVESLGGTFSNSVTSKTTYLVVGEEPGRTKLRRAEQLGIKLLNEEDFLNMVKDY 698 >gi|320102706|ref|YP_004178297.1| NAD-dependent DNA ligase [Isosphaera pallida ATCC 43644] gi|319749988|gb|ADV61748.1| DNA ligase, NAD-dependent [Isosphaera pallida ATCC 43644] Length = 896 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 234/712 (32%), Positives = 387/712 (54%), Gaps = 59/712 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L +EI +H+ YY + P+I D+EYD L + +A+ PDL P+ P + Sbjct: 15 RDRIERLRREIEHHNRLYYVEAAPVISDAEYDRLVKDLEALEAERPDLV---TPDSPTQR 71 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG V H++P LS++ ++ +LR++ TR+ + + I + +E KIDG Sbjct: 72 VGGAPLGEFITVEHTVPMLSIDNAYSEAELREWATRVRKGLTSTE--PIHYVVELKIDGV 129 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYIS 194 I +RYE G+ V A RGDG G+D++A R I IP VL PE++EVRGEV+++ Sbjct: 130 AIGLRYENGRLVRAVTRGDGERGDDITANARTIHDIPLVLDERRTPAPEVLEVRGEVFMT 189 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 +++ LN G PYAN RN +G L++L+P + R L F HGLG+T + + Sbjct: 190 ESELARLNQLRREAGEPPYANSRNLTTGTLKQLDPRQVAKRRLRFTTHGLGETRGLELRS 249 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + +L+++R G P+ + + + + K R++L + DG+V KVD+ ++ Sbjct: 250 YWAILERLRDWGLPIGPHHARYDDIEAVWRHIQTWKIQRASLDFRTDGVVVKVDDLGQRE 309 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG R++SPRW ++ K+ +QA T++ + IQ+G+TG LTPVA LEPV + G ++ A+L Sbjct: 310 RLGTRSKSPRWALAFKYDAEQAITKVRGVTIQVGKTGKLTPVAELEPVLLAGTIVKRASL 369 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN + I +D+R+GD V+V++AGE+IP+VV + +R QPF FP+ Sbjct: 370 HNPEEI-----------ARKDVRIGDTVVVEKAGEIIPQVVRVRTEDRDGTEQPFVFPTR 418 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCT-GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP ++ VV+ G++ RC L C Q E L F RDA +I+GLG++ +D Sbjct: 419 CPCDRADVVK----PPGEVDV--RCPIPALQCHRQFKEWLAWFAHRDAMDIDGLGEKLID 472 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + ++ PAD++ L + + G S NL +I ++ SL+R Sbjct: 473 QLVER----GLVKTPADLYRLD------VPTLAALDRMGKKSAENLVKAIAASKSRSLDR 522 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + L IRHVG A +LA+ + + + A I+ + A VP +G+I+A++ Sbjct: 523 LLVGLTIRHVGVGSAETLARKFGTLEALRAATIDELKA-----------VPDIGEIVAES 571 Query: 612 IVEFYQNPRNICAVEALLK-EVSPS-----IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + ++ ++P NI ++ LL VSP+ + R + K +V TGTL ++R Sbjct: 572 VFQYLRDPANIAMIDDLLSVGVSPTAPPVIVAR----AGLPLAGKTVVLTGTLPTLKRSA 627 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A++ + LG VS +S+ T +++ G + GSKL A +LGV +++E L L Sbjct: 628 AEDLIKSLGGKVSGSVSKTTSLVVAGADAGSKLVNALKLGVTVIDEATLLAL 679 >gi|189485424|ref|YP_001956365.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|254781446|sp|B1H072|DNLJ_UNCTG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|170287383|dbj|BAG13904.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 674 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 251/700 (35%), Positives = 381/700 (54%), Gaps = 56/700 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +E+ H+ YY+ + P I DSEYD L + + I P A P+ P KI G ++ Sbjct: 13 LRKELIRHNGLYYESNNPEISDSEYDNLAKELEQIEKENPLFAL---PDSPTKKISGFVS 69 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 S ++ HS P LSL+ ++ ++ K+ RI + K+ FT+EPKIDG ++ Y Sbjct: 70 SSFEQIKHSSPMLSLDNTYSQKETAKWYERIEKNLNNKNTE---FTIEPKIDGVSASLTY 126 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALN 202 G A RGDG +GED++ I+ + IP L N P E+RGEVYI K+DF LN Sbjct: 127 INGSLTAGATRGDGETGEDITENIKKVKNIPYKLKADNPPYFFELRGEVYIDKSDFRKLN 186 Query: 203 DE-MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 +E +++VG+K +AN RNAASG LR+ NP R L FFVH LGK + Q + LQ Sbjct: 187 EEILMSVGQK-FANSRNAASGSLRQKNPQITAERKLRFFVHSLGKIDGKQFESQSDFLQY 245 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 R GF + + + ++ I+ + M + R L Y+IDGLV KV+ LQK+LG + Sbjct: 246 CRKCGFQLQDNFKICHSLKEIMDFMEIMINNRDLLHYEIDGLVIKVNSLQLQKELGYTNK 305 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 SPRW I+ KF KQA+T+L I +Q+GRTGI+TP A LE V + G I++ATLHN + I+ Sbjct: 306 SPRWAIAFKFPAKQATTKLSRIRVQVGRTGIITPSAILESVTLAGVTISHATLHNFEEIE 365 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 L ++ GD VL++RAG+VIPK+V ++ E +P P CP C S Sbjct: 366 RL-----------NVNEGDTVLIERAGDVIPKIVKVVKKENRGFFKP---PHNCPSCNSG 411 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 +V++ + A+RC C AQ L HFVSR+A +I+G GK +D F + Sbjct: 412 IVKENEEEV-----AYRCINP-ECPAQFRRHLIHFVSRNAMDIDGFGKAVIDQFLDRK-- 463 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILG---FGDVSVTNLYDSINKRRNISLERFIFSL 557 I++ ADI+ L K ++ + F + +NL ++ + L + +F+L Sbjct: 464 --KIQVLADIYYL---------KYDDFIKLDLFKEKKTSNLMKAVAASKKHPLSKLLFAL 512 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR +G +++ +AK + S + A N RVP +G I+A ++ EF++ Sbjct: 513 GIRRIGEKVSEIIAKKFKSME----------ALFNASIEDFTRVPEIGSILALSLKEFFE 562 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 N ++ L+ I + ++ + K V TG L+ R +A + + LG V Sbjct: 563 NKTVRNVIDNLIAAGVNMIEPEAEQSGTQFDGKMFVLTGELKNHTREQAGKIIRSLGGKV 622 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 ++ +S+KTD I+ G N GSKL+KA++L VKI++E +F L Sbjct: 623 ASSVSKKTDYIVAGVNAGSKLKKAKELNVKIVDEAEFDIL 662 >gi|1352293|sp|P49422|DNLJ_THESC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|609276|emb|CAA82645.1| DNA ligase [Thermus scotoductus] gi|1093606|prf||2104272A DNA ligase Length = 674 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 250/718 (34%), Positives = 397/718 (55%), Gaps = 64/718 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E+ARK ++ L I YH+ YY + P I D+EYD L R + FP+L + P Sbjct: 1 MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEL---KSP 57 Query: 72 NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + + F+ + H SL+ +N ++L+ F RI R + + +T+ Sbjct: 58 DSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFNFDELKAFEERIGRALGR--EGPFAYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE G V+ A RGDG GE+V+ + IPTIPR + +PE +EVRGE Sbjct: 116 EHKVDGLSVNLYYEDGVLVWGATRGDGEVGEEVTQNLLTIPTIPRRVK-GVPERLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247 VY+ FL LN+E+ G K + NPRNAA+G LR+ +P R F+ GLG Sbjct: 175 VYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSLRQKDPRITARRGLRATFYALGLG-LE 233 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E K Q ++L +R GFPV +G +A G+ Y R +LP++ DG+V K+D Sbjct: 234 ESGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVKLD 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E SL ++LG AR+PR+ I++KF ++ TRLL + Q+GRTG +TPV LEPV I G++ Sbjct: 294 ELSLWRELGYTARAPRFAIAYKFPAEEKETRLLQVVFQVGRTGRVTPVGILEPVFIEGSV 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ TLHNE YI+ L D+R+GD VLV +AG VIP+V+ ++ +R + +P Sbjct: 354 VSRVTLHNESYIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKEKRTGEERP 402 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +P CP C R+V K GK+ HRC L C A++ E ++H+ SR A +I GLG Sbjct: 403 IRWPETCPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIGGLG 453 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINK 544 ++ ++ + ++ AD++ L++ E++LG G+ S NL I + Sbjct: 454 EKLIEKLLEK----GLVKDVADLYRLKK---------EDLLGLERMGEKSAQNLLRQIEE 500 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + LER +++LG+ VG +AR+LA ++ + + + + V Sbjct: 501 SKGRGLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEASLEELLQVEE----------V 550 Query: 605 GDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 G++ A+ I E Q+P R++ LKE + E+ + ++ V TG L + Sbjct: 551 GELTARGIYETLQDPAFRDLV---RRLKEAGVVMEAKERGEEA-LKGLTFVITGELSR-P 605 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + + + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV + EE+ L+++ Sbjct: 606 REEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLIEE 663 >gi|283850424|ref|ZP_06367713.1| DNA ligase, NAD-dependent [Desulfovibrio sp. FW1012B] gi|283574450|gb|EFC22421.1| DNA ligase, NAD-dependent [Desulfovibrio sp. FW1012B] Length = 697 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 249/719 (34%), Positives = 374/719 (52%), Gaps = 59/719 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R L++L I +H+ YY P I D+ YDAL R + A P+LA DPN P + Sbjct: 9 RARLAALRDLIHFHNHRYYVLDDPQIEDAAYDALYRELVTLEAAHPELA---DPNSPTRR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-SIFFTLEPKIDG 136 +GG + S H + SL+ + + + F+TR ++D F ++PK DG Sbjct: 66 VGGAVLPSFDSKAHGLRMYSLDNAMSETEWQDFLTRAANKLDREDVAFERTFWVDPKFDG 125 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-------RVLSLNIPEIIEVRG 189 + I YEKG + A RGDG GEDV+ +R + +P R L +PE++EVRG Sbjct: 126 LALEILYEKGVYAGALTRGDGVRGEDVTENVRTVRNVPLDLRPHARQAGLPVPELLEVRG 185 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248 EV +++ F LN+ G K +ANPRNAA+G +R+L+ +R L FF +GLG+ Sbjct: 186 EVVMTRQAFFELNERQREQGGKIFANPRNAAAGSVRQLDSRISASRPLTFFAYGLGRQDW 245 Query: 249 IFAKGQYE----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 A + ++ +R LG PV + R G+ Y+ + R LP++IDG+V Sbjct: 246 GEAASPWTTHSGVMAGLRSLGLPVASEGRMVEA-EGVYPYFQALGLRRQELPFEIDGVVA 304 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ+ LG R+PR+ ++ KF +A T L ID+Q+GRTG+LTPVA LEPV++ Sbjct: 305 KVDSLPLQEALGFTDRAPRFALALKFPAHEAETVLRQIDVQVGRTGVLTPVALLEPVSLA 364 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + ATLHNED IK +D+R GD V+V+RAG+VIP+VV +++ +R D Sbjct: 365 GVTVARATLHNEDEIK-----------AKDLREGDTVVVRRAGDVIPEVVKVVLEKRPAD 413 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A F FP CP C S VRD + AA RC LAC A + +FVS+ +IE Sbjct: 414 AAAFEFPHTCPACGSPAVRD------EGAAAWRCV-NLACPAMLRRGIAYFVSKAGLDIE 466 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN- 543 GLG++ ++ ++ PAD+F+L + ++ S +N ++ Sbjct: 467 GLGQKWVETLIAKG----MVKTPADLFSLTEAELLFLDRM------AAKSASNFVAAVEA 516 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R+ +L++ I +LGIR VG AR+LA ++ A + D Sbjct: 517 ARQKATLQKLIAALGIRQVGTRTARTLADHFRDLDALAAATAEELTALPD---------- 566 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI 661 +G +A +I EF+ N N V A K++ K ++S + K+ +FTG L + Sbjct: 567 IGPEVAASIREFFDNEANRQLV-ARFKDLGLWPVSEPKPIASAAPLAGKRFLFTGALPDM 625 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R AQ V G + + +S+K D ++ G +PGSKL KAQ LGV ++ E+F LL + Sbjct: 626 TREAAQALVEAAGGRIVSSVSKKLDYLVAGTDPGSKLAKAQALGVTVLTPEEFSSLLAE 684 >gi|154248881|ref|YP_001409706.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1] gi|190359256|sp|A7HJG6|DNLJ_FERNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|154152817|gb|ABS60049.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1] Length = 681 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 241/713 (33%), Positives = 388/713 (54%), Gaps = 49/713 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+ ++E+ L +EI YH+ YY ++P+I D EYD L +R + +P+L + P+ P Sbjct: 4 EKIKQEVEKLRKEIEYHNYRYYVLAQPVISDEEYDKLMKRLMELEEKYPEL---KTPDSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG++ V HS P LSL+ +N ++R F RI +K + + E KI Sbjct: 61 TQRVGGQLIEGFETVEHSEPMLSLDNTYNENEIRNFHERI-----RKVVRDVQYVAELKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I +RYE G V A RGDG G+DV+A ++ + +IP L L P IEVRGE+++ Sbjct: 116 DGVSIALRYENGLLVRAITRGDGLRGDDVTANVKTVKSIP--LRLPEPLTIEVRGEIFMP 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 F N + G P+ANPRNA +G L L+P+ + R L+ F++ + K + K Sbjct: 174 VQYFEEFNRQREEEGLLPFANPRNATAGTLHLLDPSQVAQRKLDSFMYYIVKPQQYDLKT 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q++ L+ + L F VN + ++ ++ Y+ E R L Y IDG+V KV++F Q Sbjct: 234 QWDALKFLEKLHFKVNPHSKLLSSIEEVIDYWKEWTEKRKKLEYWIDGVVVKVNDFEQQN 293 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I+ KF +Q T++L+I Q+GRTG +TPVA EPV + G+++ A+L Sbjct: 294 ELGWTAKSPRWAIAFKFPAQQVRTKVLNITFQVGRTGTITPVAEFEPVELEGSIVKRASL 353 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN DYIK DIRVGD V +++AG +IP++ ++ R D P Sbjct: 354 HNFDYIK-----------ENDIRVGDYVFIEKAGGIIPQISYVLKELRDGDEIETVPPEK 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C V ++ +G+ V A++C C A+ ++ FVSR A +I+GLG + + Sbjct: 403 CPECGGPVGKE----SGEYV-AYKCLNP-HCPAKLKRHIEVFVSRQAMDIQGLGPKIISK 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 A ++ AD++ L + + I G G ++N+ I K + +E+ Sbjct: 457 IVD----AGLVKDIADLYYL------NIFDLAQISGLGPKMISNILSEIEKSKQNPIEKL 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + LGI VG +IA+ LAK Y S + ++ D L + +G+ IA+ IV Sbjct: 507 LVGLGIPGVGEKIAKVLAKKYKSMEELSKA----------DIKELSEIEGIGEDIAKNIV 556 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 E++ +P+ +E L K ++ E S+ ++ TGTL+ R + + ++ L Sbjct: 557 EYFNSPKTKEILEKLRK-AGVNLESAETTTSNILDGLTFCVTGTLENFSREEIKRFIESL 615 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 G + L++KTD ++VG NPGSKLEKA++ GVK++NE++FL +L++ L+ Sbjct: 616 GGHFTDNLTKKTDYLLVGTNPGSKLEKAKKFGVKVLNEQEFLEMLEKKGVELK 668 >gi|229551868|ref|ZP_04440593.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1] gi|258539286|ref|YP_003173785.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705] gi|229314812|gb|EEN80785.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1] gi|257150962|emb|CAR89934.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705] Length = 674 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 253/723 (34%), Positives = 391/723 (54%), Gaps = 65/723 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A E++ L ++++ YY P + D+ YD R A+ AFP L Sbjct: 5 PAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKLVT 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ Q +++ Sbjct: 65 ---PDSPTQQVGDVINSDFAKVRHPIPMLSMGDVFSFEELSEWDARM----QANVGHAVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE G+ V + RGDG+ GEDV+ + I ++P+ +L P +EV Sbjct: 118 YNVELKIDGLALSLIYENGRLVQGSTRGDGNIGEDVTKNVLTIASVPK--TLKRPLSLEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245 RGE Y+ K F LN A G P+ANPRNAA+G LR+LNP IT R L+ F++ L Sbjct: 176 RGECYMPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPK-ITAGRELDTFIYTLID 234 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K Q+E + M+ LGF N A+ I +Y + S R LPY IDG+V K Sbjct: 235 ADRFNVKTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 295 VNDLALQAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAG 354 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V +R + Sbjct: 355 TTVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVKKRPANT 403 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P P CP C ++V L+ + A RC + C AQ E+L HF SR+A NI+G Sbjct: 404 PPAPIPEECPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDG 456 Query: 486 LGKQ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 LG + QL + ++ D+ L R + T +E + F + S+ NL ++I Sbjct: 457 LGPKIIAQLQ----------AKKLVTDVADLYR---LTATDLEKLDKFKEKSINNLLNAI 503 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 N R S+ER IF LGIRHVG + AR LA+++ S ++ ++A + D + +P Sbjct: 504 NNSRQNSVERLIFGLGIRHVGGKAARILAEHFGS-------LDELMAADQD---QVAAIP 553 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTG 656 +G IA+A+V +++ VE L L+ P+ S + K +V TG Sbjct: 554 NIGPTIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPT---RPAVSDSFVSGKTVVITG 610 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + R + + + QLGA V+ +S+KTD++I GD GSKL KAQ L V IM+E L Sbjct: 611 KFAEFSRPELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNVPIMDETALLT 670 Query: 717 LLQ 719 L+ Sbjct: 671 NLK 673 >gi|213962174|ref|ZP_03390438.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno] gi|213955180|gb|EEB66498.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno] Length = 663 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 240/710 (33%), Positives = 374/710 (52%), Gaps = 59/710 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L +E++ H+ YY P I D E+D + A+ A P+ D N P + Sbjct: 2 KEKIQQLREELNQHNYNYYILDNPTISDYEFDQKLKELQALEQAHPEFY---DENSPTVR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + S V H SL+ ++ EDL ++ RI + + I FT E K DG Sbjct: 59 VGGTITKSFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTL---GSDQINFTCELKYDGA 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I + YE GK A RGDG G+D++A +R I ++P L + PE +RGE+ + K Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-----YLNFFVHGLGKTSEIFAK 252 F LN E IA G P+ NPRN ASG L+ + ++ + L F V G K Sbjct: 176 FENLNKERIAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGNTG------VK 229 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q+E L+K R GF V N + ++ ++ + NE + R TLPY+ DG+V KVD + Q Sbjct: 230 SQFESLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVIKVDSIAQQ 289 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG ++SPRW +++KF +Q T L I Q+GRTG +TPVA L+PV + G ++ A+ Sbjct: 290 EELGYTSKSPRWAMAYKFKAEQVDTILESISYQVGRTGAITPVANLKPVLLAGTVVKRAS 349 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L DIR+GD V V++ GE+IPK+V + +++R DAQP + + Sbjct: 350 LHNADQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREADAQPVQYIT 398 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + ++R+ A H C +C Q +++HF+SR A +IEGLG++ ++ Sbjct: 399 HCPECSTELIRNEGE------AQHYCPNTYSCPPQITGKIQHFISRKAMDIEGLGEETVE 452 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F+ A I AD++ + + K+ + S N+ I K + I ER Sbjct: 453 QLFR----AGIIHTYADLY------EVTVEKLLPLERMAQKSAENIVKGIQKSKEIPFER 502 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F+LGIR+VG +A+ LA++Y NI A N L+ V +G+ IA ++ Sbjct: 503 VLFALGIRYVGETVAKKLARHY----------KNIEALENATIEQLVEVDEIGNQIATSV 552 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQEY 669 V F+ + N ++ LK E++ + K V +G R + + Sbjct: 553 VNFFADDYNRKLIDR-LKSYGLQFALSEESTEGHTDTLKGLTFVVSGVFHLYSRDELKAL 611 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + Q G V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F L+ Sbjct: 612 IEQHGGKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEFQSLI 661 >gi|86157121|ref|YP_463906.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C] gi|123723230|sp|Q2INT9|DNLJ_ANADE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|85773632|gb|ABC80469.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C] Length = 687 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 240/715 (33%), Positives = 377/715 (52%), Gaps = 58/715 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L + I D YY +P++ D+EYD L AI P+L ++ P ++ G + Sbjct: 13 LRERIRAADHAYYVLDQPVLADAEYDRLMHELQAIEAEHPELVTADSPT---QRVSGAPS 69 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 +V H P LSL + + ++L +F R+ R + ++ + +EPK+DG + + Y Sbjct: 70 ERFERVVHREPMLSLGNVQSDDELHEFDARVRRLLGLPEGEAVGYVVEPKLDGLAVELVY 129 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPT------IPRVLSLNIPEIIEVRGEVYISKND 197 G F + RGDG +GEDV+A +R + +P L P +EVRGEV + K Sbjct: 130 RDGAFTGGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGTPPPRVEVRGEVLLFKEH 189 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F A+N +++ G +P+ANPRNAA+G LR+L+ R L+F + + +E Sbjct: 190 FEAMNRQLVRAGDEPFANPRNAAAGTLRQLDWRVTARRPLSFVAYEALVPGGDPWRTHWE 249 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ + GF N R+ +++Y + M R LPYD DG+V KVD+ +++LG Sbjct: 250 KLEALAAWGFETNPENRRCRGLGEVLAYRDRMAERRFELPYDTDGIVVKVDDLDWRRRLG 309 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++ PRW ++ K+ ++ +TR+ I +GRTG+LTPV +PV + GA++ ATLHNE Sbjct: 310 AASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLSGAMVARATLHNE 369 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D ++ +DI GD VLV+RAGEVIP+VV + R + +PF FP+ CP+ Sbjct: 370 DEMR-----------RKDILEGDWVLVRRAGEVIPEVVKPLPERRTGEERPFRFPAECPV 418 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-------- 488 C +RVVR+ K +RCTG AC AQ + R+ HF R A +IEGLG+ Sbjct: 419 CGARVVREEGEKV------YRCTGA-ACPAQLVGRICHFAQRRALDIEGLGEKLAAGLVE 471 Query: 489 --QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 Q DF ++ A + +F+ R++Q + E + S N+ ++ + R Sbjct: 472 RGQVKDF---ADLYAVPFEVWQQLFSRPRKEQDAGAARE----LPEKSAQNMVAALERSR 524 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L RF+F+LGI VG A +LA+++ ++ I+ + + +L V VG Sbjct: 525 STTLRRFLFALGIPQVGEATAATLARHF-------GDLARILDADEE---ALKGVRDVGP 574 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A I + Q P+N VE LL V P E K +V TG L + R Sbjct: 575 ETASEIRAWTQEPQNRRVVERLLAAGVRPEPEVVEAR--GPFAGKTVVLTGGLSAMSRDD 632 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ V + G VS +SRKTD+++ G+ GSKLEKA+ LGV+++ EE+F+ LL++ Sbjct: 633 AKAEVERRGGKVSGSVSRKTDLVVAGEEAGSKLEKARSLGVRVVGEEEFVRLLKE 687 >gi|11967289|gb|AAG42042.1| NAD-dependent DNA ligase [Aquifex pyrophilus] Length = 719 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 241/731 (32%), Positives = 392/731 (53%), Gaps = 55/731 (7%) Query: 2 KKRQLI----PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA 57 K R+L+ ++ LS+E+A++ L++ I +HD YY + P+I D +YD L R Sbjct: 13 KTRELLERIKSLKDLSLEEAKRLAEELKEVIRFHDYKYYVQASPVISDYDYDRLFRALKE 72 Query: 58 IAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF 117 I FP P+ P ++ E+ V H P LSL+ + E+L+++ R+ Sbjct: 73 IERKFPQFI---TPDSPTQRVASEITGEFPTVKHYAPMLSLDNAYTEEELKEWDRRVREL 129 Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177 + +T+EPK+DG I + Y+ FV A RGDG GED++ ++ I TIP Sbjct: 130 ---TGFEVVEYTVEPKLDGAGIALVYKDDIFVRGATRGDGEYGEDITNNLKTIKTIPLKA 186 Query: 178 SLNI--PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-R 234 + ++ E+RGEV I+K +F LN E I G P+ANPRNAA+G +R+ +P ++ R Sbjct: 187 EFSRFGIKLAEIRGEVVINKEEFKKLNQERIEEGLPPFANPRNAAAGSIRQKDPKEVAKR 246 Query: 235 YLNFFVHGLG--KTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSI 291 L V+ L + E K YE L+ + LGF + + ++ Y E + Sbjct: 247 RLEAVVYQLSYVEPPERDPKTHYESLKMLDTLGFKTLFKDTKLCRGIDEVIEYCKEWEEK 306 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R T PY+IDG+V KV++ L ++LG + PRW I++KF ++A T+L+D+ Q+GRTG Sbjct: 307 RDTYPYEIDGMVVKVNDRRLYEKLGYTSHHPRWAIAYKFKPRRAVTQLVDVVFQVGRTGA 366 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPV +LEPV +GG +++ +L NED+I+ +DIR+GD VLV+RAG+VIP Sbjct: 367 ITPVGKLEPVQVGGVTVSSVSLFNEDFIR-----------EKDIRIGDYVLVERAGDVIP 415 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 + D++ +R + + FP CP C S +V+ + A RC + C AQ + R Sbjct: 416 YIADVLKEKRSGEEREIVFPERCPSCGSELVKLPDE------VARRCI-NIGCPAQSVLR 468 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 +KH+ SR+A +I GLG + F + + + + GFG Sbjct: 469 VKHWASREAMDIRGLGDATVKLLFNR----------GLVRDVGDLYYLKLLDLLRLPGFG 518 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL +I + +N ++R ++ LGIR+VG+ A+ +++ IN+I Sbjct: 519 ERSALNLLRAIEESKNRPIDRVLYGLGIRYVGSTTAKKISEI----------INSIWELK 568 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 + ++R+ VG +A++I EF+ P N+ +E L K + + ++ ++ K Sbjct: 569 DIPIERIMRLEGVGYKVAKSIKEFFSVPENLKVLEKLEKAGVNLEKKKTEKIADVLKGKT 628 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTGTL+ R KA E V LG S ++ +TD ++VG PG +KLEKA++ GVK + Sbjct: 629 FVFTGTLECCSREKAGEIVESLGGKFSNSVTSRTDYLVVGKEPGRTKLEKAKKYGVKTIT 688 Query: 711 EEQFLFLLQQY 721 EE+F+ +++ Y Sbjct: 689 EEEFINMIKDY 699 >gi|46580019|ref|YP_010827.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. Hildenborough] gi|81404693|sp|Q72BM7|DNLJ_DESVH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|46449435|gb|AAS96086.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. Hildenborough] Length = 799 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 245/718 (34%), Positives = 385/718 (53%), Gaps = 58/718 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+AR+ + L ++ H+ YY+ P I D+EYDAL R + +P L D P Sbjct: 37 EEARQRAAQLRADLERHNRLYYELDTPEISDAEYDALYRELVGLETRWPAL---RDEASP 93 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE+ L K H++ SL+ ++ ++ FI R+Y D F +PK+ Sbjct: 94 TQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFIQRMY---NALPDAPSAFWCDPKM 150 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193 DG + + YE G F A RG+G GE V+A +R + +P L ++P IEVRGEV I Sbjct: 151 DGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVVI 210 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +K DF LN A G K +ANPRNAA+G +R+L+ T R L F +G+G+ Sbjct: 211 AKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGGT 270 Query: 253 GQYE----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ ++R GF R + + +YY + + R +L +IDG+V K+D+ Sbjct: 271 APWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLDD 330 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+ LG AR+PRW ++ KF QA TRL DI +Q+GRTG+LTPVA LEPV +GG + Sbjct: 331 TEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVEV 390 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHNED I+ + + +GD VLV+RAG+VIP+VV +V ER D +PF Sbjct: 391 SRATLHNEDEIR-----------AKGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERPF 439 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C S VVR G++ AHRC + C A + + + HFVS+ ++ G+G+ Sbjct: 440 VFPENCPECDSPVVR----PQGEV--AHRCV-NVMCPAVRRQSIIHFVSKAGLDVRGVGE 492 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN-KRRN 547 + + + P +F L + + E + G S N +++ R Sbjct: 493 RWVQQLVDG----GHVTSPVGLFLLTK---LDLMRFERM---GPTSAANFVTALDAARTG 542 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L R I +LGIRHVG + AR+LA NF ++ A D +L ++P +G Sbjct: 543 ATLVRLICALGIRHVGEQTARTLAA------NF----TDLDALREADAETLQQLPDIGPE 592 Query: 608 IAQAIVEFYQNPRNICAVEALL-------KEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 +A +I F+ N N+ +E L ++ +P + ++ K++FTG+L + Sbjct: 593 VAGSIRSFFANEGNLELLERLRAIGLWPKRQDAPPASEGADAIVLPLQGLKVLFTGSLTR 652 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A++ GA +++ +++ D+++VG PGSKLEKA++LG+++M E F +L Sbjct: 653 VGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAML 710 >gi|332970057|gb|EGK09055.1| NAD-dependent DNA ligase LigA [Desmospora sp. 8437] Length = 670 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 244/717 (34%), Positives = 393/717 (54%), Gaps = 65/717 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A + + +L +EI HD Y+ ++P+I D EYDA+ R + P+L P+ P Sbjct: 5 EAEQRIEALRREIHEHDHRYHVLNQPVISDQEYDAMMRELLGLEQEHPELV---TPDSPS 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE KV H+ P LSL +N E+L++F RI R + + + + E KID Sbjct: 62 QRVGGEPLPYFEKVRHTQPMLSLANAFNFEELQEFDRRIRRLAEV---DGVDYVCELKID 118 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G ++IRYE+G V A RGDG +GE+++ ++ I ++P L L +EVRGE ++ + Sbjct: 119 GLAVSIRYEEGVMVRGATRGDGTTGENITQNLKTIRSLP--LRLRDAVTLEVRGEAFLPR 176 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 +F +N + + G +ANPRNAA+G LR+L+P R L+ F++G+G+ G Sbjct: 177 KEFERINRQKESRGETLFANPRNAAAGALRQLDPKLTAERALDIFLYGIGEIHGTETPGT 236 Query: 255 Y-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + E L + LG VN ++ + + + R L YDIDG+V KVD+ L++ Sbjct: 237 HTESLDLLSRLGLKVNPDWVTVKGIDDVMQFIDHWREHREELGYDIDGIVIKVDDLELRE 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++ T L ++I++GRTG +TP A L+PV + G + ATL Sbjct: 297 RLGTTAKSPRWAIAYKFPAEEGVTVLRGVEIKVGRTGAVTPTALLDPVILAGTTVQRATL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED+I+ ++I +GD V+VK+AG++IP+VV ++ R + +P+ P+ Sbjct: 357 HNEDFIR-----------EKEILLGDHVIVKKAGDIIPEVVGVVQERRTGEEKPYQMPTE 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S +VR G++ A RC C AQ E + HFVSR A NIEGLG++ + Sbjct: 406 CPECGSELVR----LEGEV--ALRCINP-QCPAQTREGIIHFVSRGAMNIEGLGEKVVTQ 458 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISL 550 F ++ +R PAD++ L K E++L G SV NL +I + + S+ Sbjct: 459 LFNAD----LVRGPADLYDL---------KAEDLLPLERMGKKSVENLLAAIEESKQNSV 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ IF LGIR VGA+ A LA+++ + I+A + ++ L V +G +A+ Sbjct: 506 EKLIFGLGIRFVGAKGALILAQHFGG-------LEAIMAADREE---LEAVDEIGPKMAE 555 Query: 611 AIVEFYQNPR--------NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +I ++ P V + K +P + S K +V TGTL+ + Sbjct: 556 SIETYFDKPEVKETLRRLEAAGVNMMYKGPAPV---QRGDSDSPFAGKTVVLTGTLESMS 612 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A + + G V+ +S+ TD +I G+ GSKL+KA+ LGV +++E+ FL +L+ Sbjct: 613 RKEAADRIEAQGGKVTGSVSKNTDYVIAGEKAGSKLKKARDLGVDVVDEQAFLAMLE 669 >gi|229137131|ref|ZP_04265750.1| DNA ligase [Bacillus cereus BDRD-ST26] gi|228646303|gb|EEL02518.1| DNA ligase [Bacillus cereus BDRD-ST26] Length = 589 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 230/627 (36%), Positives = 359/627 (57%), Gaps = 51/627 (8%) Query: 96 LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRG 155 LSL +N DLR F R+ Q DD ++ + E KIDG +++ YEKG+F+ A RG Sbjct: 2 LSLGNAFNEGDLRDFDRRVR---QGIDDANVRYICELKIDGLAVSLHYEKGRFIQGATRG 58 Query: 156 DGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYAN 215 DG +GED++ ++ I IP L LN +E RGE Y+ K F+ LN+E G +AN Sbjct: 59 DGVTGEDITQNLKTIKAIP--LRLNEEVTLEARGEAYMPKRSFVKLNEEKEQNGEDVFAN 116 Query: 216 PRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274 PRNAA+G +R+L+P R L+ FV+GL E E L + LGF N R Sbjct: 117 PRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKTILSHSESLDFLGELGFKTNPNRRT 176 Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334 T +++Y E + R L Y+IDG+V KVD+ +LQ+ LG A+SPRW I++KF ++ Sbjct: 177 CETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVALQESLGTTAKSPRWAIAYKFPAEE 236 Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394 TRL I++ +GRTG++TP A LEPV + G ++ A+LHNED I+ +D Sbjct: 237 VVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRRASLHNEDLIR-----------EKD 285 Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 IR+GD V+VK+AG++IP+VV+++ ++R + + + P+ CP C+S +VR L + Sbjct: 286 IRIGDYVVVKKAGDIIPEVVNVLFDKRTGEEEEYHMPTHCPACESELVR-LEEEV----- 339 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514 A RC C AQ E L HFVSR+A NI+GLG++ + F+++ IR AD+++L Sbjct: 340 ALRCINP-TCPAQIREGLIHFVSRNAMNIDGLGERVITQLFEAD----YIRTFADLYSLT 394 Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 + Q + FG+ S TNL +I + SLER +F LGIRHVGA+ AR+ A+++ Sbjct: 395 KEQLLQLER------FGEKSATNLVQAIENSKENSLERLLFGLGIRHVGAKAARTFAEHF 448 Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 E + + ++ L I +G+ +AQ++V ++ N ++ + KE Sbjct: 449 --------ETMDALVKATEEELKAINE--IGEKMAQSVVAYFDN-EDVLELLQQFKEYGV 497 Query: 635 SIGRHE------KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 ++ +NV S K +V TG L+ + R +A++ + LG V+ +S+ TD++ Sbjct: 498 NMTYKGMKIADLQNVESYFAGKTVVLTGKLEVMGRSEAKKKIEALGGKVTGSVSKSTDLV 557 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + G+ GSKL +A++ V++ NEE+FL Sbjct: 558 VAGEAAGSKLAQAEKHNVEVWNEERFL 584 >gi|315223456|ref|ZP_07865313.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287] gi|314946629|gb|EFS98620.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287] Length = 662 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 240/702 (34%), Positives = 375/702 (53%), Gaps = 51/702 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L +E++ H+ YY P I D E+D + A+ A+P+ D N P + Sbjct: 2 KEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEFY---DENSPTVR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + S V H SL+ ++ EDL ++ RI + + I FT E K DG Sbjct: 59 VGGSVTKSFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTL---GSDQINFTCELKYDGA 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I + YE GK A RGDG G+D++A +R I ++P L + PE +RGE+ + K Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F LN E IA G P+ NPRN ASG L+ + ++ R L+ ++ L + I K Q+E Sbjct: 176 FENLNKERIAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGNTGI--KSQFE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K R GF V N + ++ ++ + NE + R TLPY+ DG+V KVD + Q++LG Sbjct: 234 SLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVVKVDSIAQQEELG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW +++KF +Q T L I Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTVLESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNA 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIR+GD V V++ GE+IPK+V + +++R DAQP + + CP Sbjct: 354 DQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREVDAQPVKYITHCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +VR+ A H C C Q +++HF+SR A +IEGLG++ ++ F+ Sbjct: 403 CGTELVRNEGE------AQHYCPNAYGCPPQITGKIQHFISRKAMDIEGLGEETVEQLFR 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A I AD++ + + K+ + S N+ I K + I ER +F+ Sbjct: 457 ----AGIIHTYADLY------EVTVEKLLPLERMAQKSAENIVKGIQKSKEIPFERVLFA 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR+VG +A+ LA++Y I A N L+ V +G+ IA +IV F+ Sbjct: 507 LGIRYVGETVAKKLARHY----------KTIEALENATVEQLVEVDEIGNQIASSIVNFF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQEYVTQL 673 + N ++ LK +E+ + + K V +G R + + + Q Sbjct: 557 ADDYNRQLIDR-LKGYGLQFSINEQATEGQTDTLKGLTFVVSGVFHLYSREELKALIEQH 615 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714 G V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F Sbjct: 616 GGKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEF 657 >gi|220915846|ref|YP_002491150.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1] gi|254781252|sp|B8JD56|DNLJ_ANAD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219953700|gb|ACL64084.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1] Length = 687 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 241/715 (33%), Positives = 372/715 (52%), Gaps = 58/715 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L I D YY +P++ D+EYD L A+ P+L ++ P ++ G + Sbjct: 13 LRDRIRAADHAYYVLDQPLLADAEYDRLMHELQALEAEHPELVTADSPT---QRVSGAPS 69 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 +V H P LSL + + ++L +F R+ R D + + +EPK+DG + + Y Sbjct: 70 ERFERVVHREPMLSLGNVQSDDELHEFDARVRRLLGLPDGEPVGYVVEPKLDGLAVELVY 129 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPT------IPRVLSLNIPEIIEVRGEVYISKND 197 G F + RGDG +GEDV+A +R + +P L P +EVRGEV + K Sbjct: 130 RDGAFTSGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGRPPPRVEVRGEVLLFKEH 189 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F A+N +++ G +P+ANPRNAA+G LR+L+ R L+F + + +E Sbjct: 190 FEAMNRQLVRAGEEPFANPRNAAAGTLRQLDWRVTARRPLSFIAYEALLPGGDPWRTHWE 249 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+++ GF N R+ +++Y + M R LPYD DG+V KVD+ +++LG Sbjct: 250 KLEELAAWGFETNAENRRCRGLAEVLAYRDRMAERRFELPYDTDGIVVKVDDLDWRRRLG 309 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++ PRW ++ K+ ++ +TR+ I +GRTG+LTPV +PV + GA++ ATLHNE Sbjct: 310 AASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLSGAMVARATLHNE 369 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D ++ +DI GD VLV+RAGEVIP+VV + R QPF FP+ CP+ Sbjct: 370 DEMR-----------RKDILEGDWVLVRRAGEVIPEVVKPLPERRTGAEQPFRFPAECPV 418 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-------- 488 C +RVVR+ K +RCTG AC AQ + RL HF R A +IEGLG+ Sbjct: 419 CGARVVREEGEKV------YRCTGA-ACPAQLVGRLCHFAQRRALDIEGLGEKLAAGLVE 471 Query: 489 --QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 Q DF ++ A + +F+ R++Q + E + S N+ ++ + R Sbjct: 472 RGQVKDF---ADLYAVPFEVWQQLFSRPRKEQDAGAARE----LPEKSAQNMVAALERSR 524 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L RF+F+LGI VG A +LA+++ ++ + D +L V VG Sbjct: 525 KTTLRRFLFALGIPQVGEATAATLARHF----------GDLARVMDADEEALKGVRDVGP 574 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A I + Q P+N VE LL V+P E K +V TG L + R Sbjct: 575 ETAAEIRAWTQEPQNRRVVERLLAAGVTPEAEVVE--ARGPFAGKTVVLTGGLSTMSRDD 632 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ + + G VS +SRKT +++ G++ GSKLEKA+ LGV+I EE+F+ LL++ Sbjct: 633 AKAEIERRGGKVSGSVSRKTYLVVAGEDAGSKLEKARSLGVRIAGEEEFVRLLKE 687 >gi|307266289|ref|ZP_07547829.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1] gi|306918667|gb|EFN48901.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1] Length = 662 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 250/709 (35%), Positives = 400/709 (56%), Gaps = 51/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++ + L ++I+YH+ YY +P I D EYD L R + +P+ + P+ P Sbjct: 2 EPKERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---KTPDSPS 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE TH +P LSL ++ +LR F R+ ++ + + +E KID Sbjct: 59 QRVGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRV-----REAVGDVEYVVELKID 113 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + YE G F + RGDG GE+V+ ++ I +IP L L + VRGEV++ + Sbjct: 114 GLSVELIYENGIFTVGSTRGDGIVGENVTQNLKTIKSIP--LRLKDDASLVVRGEVFMPR 171 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN+E +G +ANPRNAA+G LR+L+P R L+ F+ L K K Sbjct: 172 TSFEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTH 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L+ ++ GF V ++ + ++ E++++R LPYDIDG V KV++ ++ Sbjct: 232 IETLEFLKEQGFKVIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREI 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG+ A+ PRW I+ K+ ++ T++LDI +Q+GRTG LTP A LEPV I G++++ ATLH Sbjct: 292 LGQTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NEDYIK +DIR+GD V+V++AGE+IP+VV+++ ER + F P C Sbjct: 352 NEDYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + VR G+ A RCT GL C AQ L + HF S+DA +IEGLG ++ Sbjct: 401 PECGALAVR----LPGE--AIRRCT-GLNCPAQLLRGIIHFASKDAMDIEGLGPAIINQL 453 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 S+ +I AD++ L+ ++ GD SV NL ++I + + L+R + Sbjct: 454 L-SKGLIHNI---ADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLL 503 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGI +G++ A+ +A+++ + ++NI+ +D+ L P +G +A++IV Sbjct: 504 FGLGINLIGSKAAQVIAEHF-------KTMDNIMKAKFEDFTQL---PDIGPKMARSIVS 553 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+ +N+ +E LK ++ + K VS+ E K V TGTL+ R +A + + Sbjct: 554 FFAEKQNVEIIEK-LKNAGVNMKKLSKGKVSNIFEGKTFVLTGTLENYTREEATRMIEER 612 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 G V+ +S+KTD I+VG +PGSKL+KAQ+LG+KI++E+QF +L+ N Sbjct: 613 GGKVTNSVSKKTDYILVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGEN 661 >gi|311233982|gb|ADP86836.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris RCH1] Length = 818 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 247/721 (34%), Positives = 388/721 (53%), Gaps = 64/721 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+AR+ + L ++ H+ YY+ P I D+EYDAL R + +P L D P Sbjct: 56 EEARQRAAQLRADLERHNRLYYELDTPEISDAEYDALYRELVGLETRWPAL---RDEASP 112 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE+ L K H++ SL+ ++ ++ FI R+Y D F +PK+ Sbjct: 113 TQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFIQRMY---NALPDAPSAFWCDPKM 169 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193 DG + + YE G F A RG+G GE V+A +R + +P L ++P IEVRGEV I Sbjct: 170 DGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVVI 229 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +K DF LN A G K +ANPRNAA+G +R+L+ T R L F +G+G+ Sbjct: 230 AKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGGT 289 Query: 253 GQYE----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ ++R GF R + + +YY + + R +L +IDG+V K+D+ Sbjct: 290 APWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLDD 349 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+ LG AR+PRW ++ KF QA TRL DI +Q+GRTG+LTPVA LEPV +GG + Sbjct: 350 TEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVEV 409 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHNED I+ + + +GD VLV+RAG+VIP+VV +V ER D +PF Sbjct: 410 SRATLHNEDEIR-----------AKGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERPF 458 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C S VVR G++ AHRC + C A + + + HFVS+ ++ G+G+ Sbjct: 459 VFPENCPECDSPVVR----PQGEV--AHRCV-NVMCPAVRRQSIIHFVSKAGLDVRGVGE 511 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSIN-K 544 + + + P +F L TK+ +++ F G S N +++ Sbjct: 512 RWVQQLVDG----GHVTSPVGLFLL--------TKL-DLMRFERMGPTSAANFVTALDAA 558 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R +L R I +LGIRHVG + AR+LA NF ++ A D +L ++P + Sbjct: 559 RTGATLVRLICALGIRHVGEQTARTLAA------NF----TDLDALREADAETLQQLPDI 608 Query: 605 GDIIAQAIVEFYQNPRNICAVEALL-------KEVSPSIGRHEKNVSSEIENKKLVFTGT 657 G +A +I F+ N N+ +E L ++ +P + ++ K++FTG+ Sbjct: 609 GPEVAGSIRSFFANEGNLELLERLRAIGLWPKRQDAPPASEGADAIVLPLQGLKVLFTGS 668 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L ++ R +A++ GA +++ +++ D+++VG PGSKLEKA++LG+++M E F + Sbjct: 669 LTRVGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAM 728 Query: 718 L 718 L Sbjct: 729 L 729 >gi|307152955|ref|YP_003888339.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 7822] gi|306983183|gb|ADN15064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7822] Length = 682 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 242/721 (33%), Positives = 391/721 (54%), Gaps = 64/721 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQ R EL Q+ SY YY PI+ D+ YD L R + + +P+L P+ Sbjct: 12 VEQLRSEL----QKASY---AYYVLDNPIMEDAVYDQLYRELENLETQYPELI---TPDS 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK--KDDNSIFFTLE 131 P ++G +++ V H IP SLE +N+E+ ++ R WQ+ + + E Sbjct: 62 PTQRVGDKLSEQFTSVKHHIPLYSLENAFNLEEFTRWQER----WQRIAPETKQFEYVCE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 KIDG+ I + YE G V RGDG GE+++ I+ I +IP R+ S + P +EVRGE Sbjct: 118 LKIDGSAIALTYENGLLVRGVTRGDGVVGEEITQNIKTIRSIPLRLQSDHPPARVEVRGE 177 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL---GKT 246 ++ +F +N E A G +ANPRNAA+G LR+L+P + R L FF + L Sbjct: 178 AFLPVEEFERINQEKAATGESLFANPRNAAAGTLRQLDPKIVDRRRLQFFAYTLYIVDTE 237 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ + + Q+E L+ ++ +GF VN + + + YY + R LPY DG+V K+ Sbjct: 238 NQSYPQTQWESLEFLQKIGFLVNPNRKLCQSLEDVEQYYQHWDTRRRNLPYMTDGVVVKI 297 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 +++ LQKQLG + PRW I+ K+A ++A TR+ +I + +GRTG +TP+A +EPV + G Sbjct: 298 NDYDLQKQLGFTQKFPRWAIALKYAAEEAPTRVKNITVNVGRTGAVTPMAIMEPVQLAGT 357 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D + L DIRVGD V++++AGE+IP+VV +I R + Q Sbjct: 358 TVQKATLHNSDRVAQL-----------DIRVGDTVIIRKAGEIIPEVVRVISELRPANTQ 406 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ P+ CP C S +VR PK G+ A RC +C A L H+ SRDA +I GL Sbjct: 407 PYQMPTHCPECNSTLVR---PK-GE--AVTRCVNS-SCPAILRGSLVHWCSRDALDIRGL 459 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ + ++E ++ D++ L+ Q I ++ G S NL ++INK + Sbjct: 460 GEKVVILLIENE----LVKSIVDLYGLKAEQ------IASLERMGTKSANNLVNAINKSK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 R ++ LGIR+VG A+ L + + + ++ + SL V +G Sbjct: 510 QQPWSRVLYGLGIRYVGNVTAKILTDNFPTVEQLSRA----------SFASLESVYGIGS 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 IAQ++ ++++ N+ V+ L + E + ++ + ++ K V TGTL + Sbjct: 560 EIAQSVSDWFKIEANLTLVKQLQQAGLQFETATVTKNTSESTPTPLKGKTFVITGTLPSL 619 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 +R++AQ+ + + G V+ +S KTD ++VG++ GSKL KAQQLG+ ++EE L ++Q Sbjct: 620 KRNEAQQLIEEAGGKVTGSVSAKTDYLVVGEDAGSKLAKAQQLGIIQLSEEALLAMIQGK 679 Query: 722 N 722 N Sbjct: 680 N 680 >gi|26990965|ref|NP_746390.1| NAD-dependent DNA ligase LigA [Pseudomonas putida KT2440] gi|81439923|sp|Q88F25|DNLJ_PSEPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|24985989|gb|AAN69854.1|AE016624_5 DNA ligase, NAD-dependent [Pseudomonas putida KT2440] Length = 776 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 219/621 (35%), Positives = 343/621 (55%), Gaps = 44/621 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + L E+ H+ YY +P + D+EYD L A+ P L P+ P Sbjct: 3 AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + +V H +P LSL + DLR+F R+ + ++ ++ EPK+DG Sbjct: 60 RVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQP--GAVDYSCEPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 +++ Y G+ V A RGDG +GED+SA +R + IP ++ P ++EVRGEVY+SK Sbjct: 118 LAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN G K +ANPRNAA+G LR+L+ +R L F +G+G+ SE Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L++++ G P++ ++ A ++YY ++ R++LPY+IDG+V+KV+ + Q++ Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T +LD++ Q+GRTG +TPVARL+PV + G ++NATLH Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L +R+GD V+++RAG+VIP+V+ +++ R A+P PS C Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPQGARPVEVPSAC 406 Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S+ V R +T A +RC G LAC AQ + + H+VSR A +I+GLG+ Sbjct: 407 PVCGSQVERTRLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ D I PAD++ LQ Q + + GF +VS L D+I + Sbjct: 467 KSVEQLV---DEGL-IGSPADLYKLQFEQ------VVGLEGFAEVSTQKLLDAIEASKRP 516 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL RFI++LGI VG E A+ LA+ S Q + ++ + +P +G + Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566 Query: 609 AQAIVEFYQNPRNICAVEALL 629 A I F+++ N ++ LL Sbjct: 567 AYEIHNFFEDEHNQKVIQQLL 587 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 13/121 (10%) Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI---GRH---EKNVSS--EIENKKLVFTGTLQK 660 A A+ EF+++ N + L +++ + G H EK V+ + + V TGTL++ Sbjct: 656 ADAVREFFKDEAN----QKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLER 711 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL-FLLQ 719 + R A++ + LGA V+ +S KT ++ G GSKL KA +LGVK+++E+ F+ FL + Sbjct: 712 MSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFLAE 771 Query: 720 Q 720 Q Sbjct: 772 Q 772 >gi|309782142|ref|ZP_07676872.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA] gi|308919208|gb|EFP64875.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA] Length = 813 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 241/682 (35%), Positives = 367/682 (53%), Gaps = 71/682 (10%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E++ + YY +P + D+EYD L R +A+ P+L + P+ P ++GG + Sbjct: 20 LRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPEL---KTPDSPTLRVGGAVL 76 Query: 84 LSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYRFWQKKD-DNSIFFTLEPKIDGTMIT 140 V H IP LS+ E R F + R D D + + E K DG I Sbjct: 77 PEFAAVRHVIPMLSIRTETDTTPNGARAFDASVRRELGLDDTDPPVEYAAELKFDGLAIG 136 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEIIEVRGEVYISKND 197 +RYE+G V AA RGDG +GEDV+ IR I IP LS ++P+++EVRGEVY+ ++D Sbjct: 137 LRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHVPDVLEVRGEVYMRRDD 196 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG--- 253 F LN G K + NPRN A+G +R+L+P R L+FF +GLG+ + KG Sbjct: 197 FEKLNVRQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEV--VGWKGMPG 254 Query: 254 -QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ML ++ GFPV+ G+V +++ + + R +LP+DIDG+VYKV+ +LQ Sbjct: 255 THSGMLDALQAFGFPVSAERAAVKGGDGLVEFHDAIGAKRDSLPFDIDGVVYKVNSLALQ 314 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG R+R PRW ++HK+ ++A T + ID+Q+GRTG +TPVARL PV +GG +TNAT Sbjct: 315 RELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITPVARLVPVFVGGVTVTNAT 374 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER----------- 421 LHNED ++ +D+RVGD V+V+RAG+VIP+VV ++++ R Sbjct: 375 LHNEDEVR-----------RKDVRVGDTVVVRRAGDVIPEVVSVVLDRRPLDDVPGSDLF 423 Query: 422 ----HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 P PF P CP+C S VVR+ G+ VA RC+GGL CSAQ+ E ++HF Sbjct: 424 NPRQQPKYPPFELPKTCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAG 477 Query: 478 RDAFNIEGLGKQ------QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 R +IEGLG++ +LD+ D + + + D ++RR + G Sbjct: 478 RRMMDIEGLGERYIDNLVELDYVHGIAD-LYKLTL-EDFLEMKRRADERDGVKPETVSAG 535 Query: 532 DVSVT---NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 ++ NL + I + L RF+F+LGIRHVG A++LA + S + ++ Sbjct: 536 KIATKWAENLLEGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAMIRRAPAPLL 595 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSE 646 D VG +A+AI +F+ P+N A++ALL+ G H N + + Sbjct: 596 LALPD----------VGATVAEAIADFFAEPKNQQALDALLEAGVAPQGEHAPNAKLREK 645 Query: 647 IENKKLVFTGTLQKIQRHKAQE 668 +E +L T + K+ +A++ Sbjct: 646 LEPAELYATLGVPKLTATRAKQ 667 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 49/74 (66%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +V TGTL + R +A+ + GA VS +S+KTD ++ G++ GSKL KA++L V Sbjct: 734 LAGKTVVLTGTLPNLTRDEAKAMLEAAGAKVSGSVSKKTDYVVAGEDAGSKLAKAEELNV 793 Query: 707 KIMNEEQFLFLLQQ 720 K+++E L LL++ Sbjct: 794 KVLDEAGMLALLKK 807 >gi|313893283|ref|ZP_07826858.1| DNA ligase (NAD+) [Veillonella sp. oral taxon 158 str. F0412] gi|313442179|gb|EFR60596.1| DNA ligase (NAD+) [Veillonella sp. oral taxon 158 str. F0412] Length = 667 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 232/703 (33%), Positives = 375/703 (53%), Gaps = 46/703 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L+QE+++ YY P + D EYD R + A P+ P+ P + Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ S KV H P LSL ++N +++R F +R+ + K + +E KIDG Sbjct: 61 VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFASRVEKELGHKPS---AYVVELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L N PE IEVRGE Y+ ++ Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYLE-NAPEFIEVRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P +R L FF + +G Q E Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEEGASIHSQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ + F VN R T ++ N + R LPYD DG+V KV+ F Q+ LG Sbjct: 237 LLKSLENFKFSVNPHYRVCQTIDDVIETINYWEEKRHDLPYDTDGMVIKVNSFDDQEALG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T L DI I +GRTG+LTP LE V + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD V++ +A E+IP+V+ ++ +R PF+ P+ CP+ Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR + G+ AA RCT C A + E++ HF SRDA NI+GLG ++ Sbjct: 406 CESPTVR----REGE--AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ A + D++ L Q + ++ G S NL +I ++ L+R ++ Sbjct: 459 NKLIANVV----DLYHLTVDQLVTMDRM------GKKSAENLVKAIGDSKSRGLDRVLYG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A S + F L+ V +G +A +IVE+ Sbjct: 509 LGIRLIGSKAAATIANVVQSMERFMTITKE----------ELVAVEEIGPTMADSIVEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q+P + +E L + + ++++ + +V TG L+ + R +A + + GA Sbjct: 559 QDPAHAAIIEGLTQAGLKMTVDVVEAAGNQMDGEIVVLTGKLEIMGRSEAGKILEAHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT +++ G++ GSKL KA +LG+++MNEE+F+ LL+ Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVMNEEEFVELLR 661 >gi|269798060|ref|YP_003311960.1| DNA ligase, NAD-dependent [Veillonella parvula DSM 2008] gi|269094689|gb|ACZ24680.1| DNA ligase, NAD-dependent [Veillonella parvula DSM 2008] Length = 667 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 231/704 (32%), Positives = 378/704 (53%), Gaps = 46/704 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L+QE+++ YY P + D EYD R + A P+ P+ P + Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ S KV H P LSL ++N +++R F R+ + K + + +E KIDG Sbjct: 61 VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFGNRVEKELGHKPSS---YVVELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L N PE IEVRGE Y+ ++ Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLFLD-NAPEFIEVRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P R L FF + +G Q E Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITANRNLAFFAYAIGSEVGANIHSQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ + F VN R T ++ + R LPYD DG+V KV+ F Q+ LG Sbjct: 237 LLKSLENFKFSVNPHYRVCKTIDEVIEAIDYWGDKRHELPYDTDGMVIKVNNFDDQEVLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T L DI I +GRTG+LTP+ LE V + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPIGELESVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD V++ +A E+IP+V+ ++ +R+ PF+ P+ CP+ Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR + G+ AA RCT C A + E++ HF SRDA NI+GLG ++ Sbjct: 406 CESPAVR----REGE--AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ I D++ L Q + ++ G S NL +IN ++ L+R ++ Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAINDSKSRGLDRVLYG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A S + F + L+ V +G +A +I+E+ Sbjct: 509 LGIRLIGSKAATTIANVVKSMERFMTITKD----------ELVAVEEIGPTMADSIIEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q+P ++ +E L + + +++E + +V TG L+ + R +A + + GA Sbjct: 559 QDPSHVAIIEGLTQAGLKMTVDVVEAAGNQLEGEIVVLTGKLEVMGRTEAGKILEAHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL++ Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVLNEEEFVELLKE 662 >gi|256820386|ref|YP_003141665.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271] gi|256581969|gb|ACU93104.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271] Length = 662 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 239/702 (34%), Positives = 375/702 (53%), Gaps = 51/702 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L +E++ H+ YY P I D E+D + A+ A+P+ D N P + Sbjct: 2 KEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEFY---DENSPTVR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + S V H SL+ ++ EDL ++ RI + + I FT E K DG Sbjct: 59 VGGSVTKSFPTVIHEYRMYSLDNSYSKEDLEEWEQRIIKTL---GSDQINFTCELKYDGA 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I + YE GK A RGDG G+D++A +R I ++P L + PE +RGE+ + K Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKA 175 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F +LN E A G P+ NPRN ASG L+ + ++ R L+ ++ L + I K Q+E Sbjct: 176 FESLNKERTAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGNTGI--KSQFE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K R GF V N + ++ ++ + NE + R TLPY+ DG+V KVD + Q++LG Sbjct: 234 SLEKAREWGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVVKVDSIAQQEELG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW +++KF +Q T L I Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTVLESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNA 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIR+GD V V++ GE+IPK+V + +++R DAQP + + CP Sbjct: 354 DQIEKL-----------DIRIGDSVYVEKGGEIIPKIVGVNLDKREADAQPVKYITHCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +VR+ A H C C Q +++HF+SR A +IEGLG++ ++ F+ Sbjct: 403 CGTELVRNEGE------AQHYCPNAYGCPPQITGKIQHFISRKAMDIEGLGEETVEQLFR 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A I AD++ + + K+ + S N+ I K + I ER +F+ Sbjct: 457 ----AGIIHTYADLY------EVTVEKLLPLERMAQKSAENIVKGIQKSKEIPFERVLFA 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR+VG +A+ LA++Y I A N L+ V +G+ IA +IV F+ Sbjct: 507 LGIRYVGETVAKKLARHY----------KTIEALENATIEQLVEVDEIGNQIASSIVNFF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQEYVTQL 673 + N ++ LK +E+ + + K V +G R + + + Q Sbjct: 557 ADDYNRQLIDR-LKGYGLQFSINEQATEGQTDTLKGLTFVVSGVFHLYSREELKALIEQH 615 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714 G V + +S KT+ +IVGDN G SK EKA+QLGVK+++EE+F Sbjct: 616 GGKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEF 657 >gi|301066103|ref|YP_003788126.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang] gi|300438510|gb|ADK18276.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang] Length = 674 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 243/720 (33%), Positives = 376/720 (52%), Gaps = 59/720 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A+ E+ L ++++ YY P + D+ YD R A+ A+P L Sbjct: 5 PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLVT 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ Q + + Sbjct: 65 ---PDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE GK V + RGDG+ GEDV+ + I ++P+ L P +EV Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPK--QLKQPLSLEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGE Y+ K F LN G P+ANPRNAA+G LR+L+ R L+ F++ L + Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + Q+E + M+ LGF N A I +Y + + R LPY IDG+V KV Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V +R D Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPVDTP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P CP C ++V L+ + A RC + C AQ E+L HF SR+A NI+GL Sbjct: 405 PAPIPEVCPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ AD++ L + + + F + S+ NL +IN R Sbjct: 458 GPK----IVAQLQAKHLVKDVADLYHL------TAADLAKLDKFKEKSINNLLSAINNSR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+ER IF LGIRHVG + AR LA+++ + IA VP +G Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIAD----------VPNIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQ 659 IA+AIV +++ V+ L+ ++ + G + V S + K +V TG Sbjct: 558 TIAEAIVTYFK----AATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFA 613 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R + + LGA V+ +S+KTD++I GD GSKL KAQ L V IMNE + L L+ Sbjct: 614 EFSRPALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLK 673 >gi|154498024|ref|ZP_02036402.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC 29799] gi|150273014|gb|EDN00171.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC 29799] Length = 664 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 235/720 (32%), Positives = 384/720 (53%), Gaps = 73/720 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E++ L E++ YY P + D ++D RR + + A PD + P ++ Sbjct: 5 QEIALLRAELNKASYEYYVLDNPTMSDYDFDHKLRRLEELEQAHPDQITEDSPT---RRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG++ +VTH +P SL+ ++++E+L F+ R+ Q+ D F +EPK+DG Sbjct: 62 GGQVADGFQEVTHEVPLESLQDVFDLEELGDFVRRV----QESLDGKAEFDVEPKVDGLS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + Y G FV A RGDG GEDV+ ++ I ++P L IP++I VRGEVY+SK F Sbjct: 118 VALEYRDGLFVRGATRGDGRVGEDVTENLKTIRSLPLRLPEPIPQLI-VRGEVYMSKKVF 176 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-----------T 246 LN+E G +ANPRNAA+G LR+L+P +R L+ V + K T Sbjct: 177 EQLNEEREIRGEALFANPRNAAAGSLRQLDPKVAASRKLDIVVFNIQKAEGAEFSTHTET 236 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + + Q+ ++ + C G R A G R PYDIDG V K+ Sbjct: 237 LDYLERQQFRVIPRTLCTSME-EIGTRIAAIGDG-----------REEFPYDIDGAVVKL 284 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + +K LG A+ PRW ++K+ +Q + + DI +Q+GRTG+LTP A ++PV + G Sbjct: 285 NSLADRKILGSTAKFPRWAAAYKYPPEQKESVVEDIVVQVGRTGVLTPKAVVKPVRLAGT 344 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TNATLHN+D+I +DIR+GD VLV++AGE+IP++V ++ +R Sbjct: 345 TVTNATLHNQDFIT-----------EKDIRIGDTVLVQKAGEIIPEIVSVVKEKRPEGTV 393 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ P CP+C + V RD + AH RCTG C AQ L L HF SRDA +I+G Sbjct: 394 PYHLPDHCPVCGAPVARDED-------GAHIRCTGA-ECPAQLLRHLAHFASRDAMDIDG 445 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG ++ A ++ PAD+++L + + + G S NL +I++ Sbjct: 446 LGPAVMEALIS----AGMVKTPADLYSL------APEAVAQLDRMGKKSAENLAAAIDRS 495 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L R +F+ GIR VG + + LA ++ + ++ ++A +D+ + VP VG Sbjct: 496 KGAGLARLLFAFGIRQVGQKAGKILASHFST-------MDALLAATEEDFTA---VPDVG 545 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I A+++ ++ + ++ ++A L+E + + + K V TG+L++ R + Sbjct: 546 AITAKSLWDWLHSHQSQHLIQA-LREAGVVMENTDAPTGDALTGKTFVLTGSLERFTRAE 604 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 A + LG VS +S+KT ++ G+ GSKL+KAQ LG+ ++ EE+FL +L++ T+ Sbjct: 605 AGAQIEALGGKVSGSVSKKTSYVVAGEAAGSKLKKAQDLGIPVLTEEEFLIMLRELGATI 664 >gi|227535466|ref|ZP_03965515.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186876|gb|EEI66943.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 674 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 243/720 (33%), Positives = 376/720 (52%), Gaps = 59/720 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A+ E+ L ++++ YY P + D+ YD R A+ A+P L Sbjct: 5 PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAYPKLVT 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ Q + + Sbjct: 65 ---PDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE GK V + RGDG+ GEDV+ + I ++P+ L P +EV Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPK--QLKQPLSLEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGE Y+ K F LN G P+ANPRNAA+G LR+L+ R L+ F++ L + Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + Q+E + M+ LGF N A I +Y + + R LPY IDG+V KV Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V +R D Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P CP C ++V L+ + A RC + C AQ E+L HF SR+A NI+GL Sbjct: 405 PAPIPEACPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ AD++ L + + + F + S+ NL +IN R Sbjct: 458 GPK----IVAQLQAKHLVKDVADLYHL------TAADLAKLDKFKEKSINNLLSAINNSR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+ER IF LGIRHVG + AR LA+++ + IA VP +G Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIAD----------VPNIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQ 659 IA+AIV +++ V+ L+ ++ + G + V S + K +V TG Sbjct: 558 TIAEAIVTYFK----AATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFA 613 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R + + LGA V+ +S+KTD++I GD GSKL KAQ L V IMNE + L L+ Sbjct: 614 EFSRPALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLK 673 >gi|116494557|ref|YP_806291.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334] gi|122264017|sp|Q03AC3|DNLJ_LACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116104707|gb|ABJ69849.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334] Length = 674 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 243/720 (33%), Positives = 375/720 (52%), Gaps = 59/720 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A+ E+ L ++++ YY P + D+ YD R A+ A+P L Sbjct: 5 PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLVT 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ Q + + Sbjct: 65 ---PDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE GK V + RGDG+ GEDV+ + I ++P+ L P +EV Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPK--QLKQPLSLEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGE Y+ K F LN G P+ANPRNAA+G LR+L+ R L+ F++ L + Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + Q+E + M+ LGF N A I +Y + + R LPY IDG+V KV Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V +R D Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P CP C ++V L+ + A RC + C AQ E+L HF SR+A NI+GL Sbjct: 405 PAPIPEVCPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ AD++ L + + + F + S+ NL +IN R Sbjct: 458 GPK----IVAQLQAKHLVKDVADLYHL------TAADLAKLDKFKEKSINNLLSAINNSR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+ER IF LGIRHVG + AR LA+++ + IA VP +G Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIAD----------VPNIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQ 659 I +AIV +++ V+ L+ ++ + G + V S + K +V TG Sbjct: 558 TIGEAIVTYFK----AATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFA 613 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R + + LGA V+ +S+KTDI+I GD GSKL KAQ L V IMNE + L L+ Sbjct: 614 EFSRPALTKQLEGLGAKVTGSVSKKTDILIAGDAAGSKLAKAQSLNVPIMNETELLANLK 673 >gi|239631844|ref|ZP_04674875.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526309|gb|EEQ65310.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 674 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 243/720 (33%), Positives = 375/720 (52%), Gaps = 59/720 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A+ E+ L ++++ YY P + D+ YD R A+ A+P L Sbjct: 5 PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLVT 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ Q + + Sbjct: 65 ---PDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE GK V + RGDG+ GEDV+ + I ++P+ L P +EV Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPK--QLKQPLSLEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGE Y+ K F LN G P+ANPRNAA+G LR+L+ R L+ F++ L + Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 Q+E + M+ LGF N A I +Y + + R LPY IDG+V KV Sbjct: 236 ERFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V +R D Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P CP C ++V L+ + A RC + C AQ E+L HF SR+A NI+GL Sbjct: 405 PAPIPEVCPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ AD++ L + + + F + S+ NL +IN R Sbjct: 458 GPK----IVAQLQAKHLVKDVADLYHL------TAADLAKLDKFKEKSINNLLSAINNSR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+ER IF LGIRHVG + AR LA+++ + IA VP +G Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIAD----------VPNIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQ 659 IA+AIV +++ V+ L+ ++ + G + V S + K +V TG Sbjct: 558 TIAEAIVTYFK----AATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFA 613 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R + + LGA V+ +S+KTD++I GD GSKL KAQ L V IMNE + L L+ Sbjct: 614 EFSRPALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLK 673 >gi|317121135|ref|YP_004101138.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885] gi|315591115|gb|ADU50411.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885] Length = 764 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 227/602 (37%), Positives = 344/602 (57%), Gaps = 52/602 (8%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 +I +HD YY +P I D+ YDAL R + FP++ P+ P ++GG+ Sbjct: 34 QIRHHDYLYYVLDRPEIDDAAYDALMRELRELEARFPEIV---TPDSPTQRVGGKPAAPF 90 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 +V H+ P LSL+ ++ E+L F R+ R + + E KIDG I + YE+G Sbjct: 91 ARVEHAEPMLSLDNAFSREELEAFDQRVRR----AVGGDVAYVAELKIDGLSIALTYEEG 146 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALND 203 +FV A RGDG +GEDV+A +R I ++P R +P+ +EVRGEVY++ + F LN Sbjct: 147 RFVRGATRGDGEAGEDVTANLRTIRSLPLRLRDRERQVPQRVEVRGEVYMTFDAFRRLNQ 206 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL-GKTSEIFA--KGQYEMLQ 259 E A G+ P+ANPRNAA+G +R+L+P R LN +V+ L G + A + Q+E+LQ Sbjct: 207 EQEARGQAPFANPRNAAAGSVRQLDPAVTAARSLNLWVYALAGWEGDPAAAPRSQWEVLQ 266 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 +R G PVN R+ + +++Y +E + R LPY IDG+V KVD+ + Q++LG A Sbjct: 267 TLRQWGLPVNPHARRCTSLDELLAYIDEWAARRHQLPYLIDGIVIKVDDLAQQRELGTTA 326 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 RSPRW I++KF ++A TR+ DI + +GRTG LTPVA L+PV + G ++ A+LHN DYI Sbjct: 327 RSPRWAIAYKFPAEKARTRVRDILVSVGRTGALTPVAVLDPVLLAGTTVSRASLHNADYI 386 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 + +D+R+GD V+V +AGE+IP+VV+++ R D +PF+ P CP C S Sbjct: 387 R-----------EKDVRIGDLVVVHKAGEIIPEVVEVVKEARTGDERPFTMPERCPACGS 435 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 VVR G+ AA RC AC AQQLER++HF SRDA +IEGLG ++ Sbjct: 436 PVVR----VEGE--AATRCPNA-ACPAQQLERIRHFASRDAMDIEGLGPAVIEQLVAR-- 486 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 +R AD++ L+ + + G S NL +I+ R L R ++ LGI Sbjct: 487 --GLVRDVADLYRLE------AEPVAQLERMGPKSAANLIAAIDASRARPLRRLLYGLGI 538 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 R VG +A LA+++ + I+ ++ + L+ VP +G IA+++ F+++ Sbjct: 539 RFVGERVAGVLARHFGT-------IHRVMEAEPAE---LMAVPEIGPRIAESVAAFFRDE 588 Query: 620 RN 621 N Sbjct: 589 HN 590 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 47/77 (61%) Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 V + K VFTG L + R +A+ V LG + +SRKTD ++ G+ GSKL KA Sbjct: 683 EVRERVAGKTFVFTGGLASMTRDEAEALVEALGGRATGSVSRKTDYVVAGEGAGSKLAKA 742 Query: 702 QQLGVKIMNEEQFLFLL 718 ++LG+ +++E+ FL L+ Sbjct: 743 RELGIPVLDEQAFLRLV 759 >gi|191637997|ref|YP_001987163.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus casei BL23] gi|254781352|sp|B3WD54|DNLJ_LACCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190712299|emb|CAQ66305.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus casei BL23] gi|327382073|gb|AEA53549.1| DNA ligase [Lactobacillus casei LC2W] gi|327385217|gb|AEA56691.1| DNA ligase [Lactobacillus casei BD-II] Length = 674 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 243/720 (33%), Positives = 376/720 (52%), Gaps = 59/720 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++E+A+ E+ L ++++ YY P + D+ YD R A+ A+P L Sbjct: 5 PAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKLVT 64 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G +N KV H IP LS+ +++ E+L ++ R+ Q + + Sbjct: 65 ---PDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARM----QSNVGHPVD 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ YE GK V + RGDG+ GEDV+ + I ++P+ L P +EV Sbjct: 118 YNVELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPK--QLKQPLSLEV 175 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGE Y+ K F LN G P+ANPRNAA+G LR+L+ R L+ F++ L + Sbjct: 176 RGECYMPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEP 235 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + Q+E + M+ LGF N A I +Y + + R LPY IDG+V KV Sbjct: 236 EQFNVTTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ +LQ QLG + PRW I++KF ++A T + DI +GRTG++TP A ++PV + G Sbjct: 296 NDLALQAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGT 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN D I+ +DIR+GD V++ +AG++IP+V ++V +R D Sbjct: 356 TVARATLHNADMIR-----------DKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPVDTP 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P CP C ++V L+ + A RC + C AQ E+L HF SR+A NI+GL Sbjct: 405 PAPIPEACPSCGQKLVH-LDDEV-----ALRCINPM-CPAQVQEQLTHFASRNAMNIDGL 457 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ AD++ L + + + F + S+ NL +IN R Sbjct: 458 GPK----IVAQLQAKHLVKDVADLYHL------TAADLAKLDKFKEKSINNLLSAINNSR 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+ER IF LGIRHVG + AR LA+++ + IA VP +G Sbjct: 508 QNSVERLIFGLGIRHVGGKAARILAEHFGDLDHLMTASQEAIAD----------VPNIGP 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQ 659 IA+AIV +++ V+ L+ ++ + G + V S + K +V TG Sbjct: 558 TIAEAIVTYFK----AATVQKLITQLREADVNLRYTGPTKPVVKDSFVAGKTVVITGKFA 613 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R + + LGA V+ +S+KTD++I GD GSKL KAQ L V IMNE + L L+ Sbjct: 614 EFSRPALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNVPIMNETELLANLK 673 >gi|319937197|ref|ZP_08011604.1| DNA ligase [Coprobacillus sp. 29_1] gi|319807563|gb|EFW04156.1| DNA ligase [Coprobacillus sp. 29_1] Length = 662 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 245/701 (34%), Positives = 386/701 (55%), Gaps = 58/701 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ L E +Y YY P + D EYD L + AI + P+ ++ P+ ++G Sbjct: 8 EIKKLLNEYNYQ---YYVLDNPSVSDQEYDRLMQELQAIENQHPEWLTADSPS---QRVG 61 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G++ S K+TH LSL I+N ++L F R+ + ++ + E KIDG + Sbjct: 62 GQVLDSFTKITHERMMLSLGNIFNEDELMAFDERVRETYP-----NVEYVCELKIDGLAV 116 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ Y G+ YAA RGDG GED++ ++ I +IP L+++ EVRGE+++ K F Sbjct: 117 SLVYADGRLDYAATRGDGTVGEDITHNVKTIKSIP--LTIDYDGDFEVRGEIFMPKKSFN 174 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E G +ANPRNAA+G +R+L+ T R L+ F++ + +E+ E L Sbjct: 175 ELNEERAKAGEALFANPRNAAAGSVRQLDSTIAAKRKLDAFLYMVPTATEVGCTTHKEAL 234 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N ++ + ++ EM R TLPY+IDG+V KV+ Q +LG Sbjct: 235 DYIKELGFKTNPMTHVSSDIQDVWAFIQEMTEKRDTLPYEIDGIVIKVNNLEEQVRLGYT 294 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A+ P+W I++KF ++ T+L DI IGRTG +TP A LEPV + G+ + ATLHNED Sbjct: 295 AKVPKWAIAYKFPAEEVVTKLKDIIFTIGRTGQITPNAILEPVRVAGSTVQRATLHNEDN 354 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 +K +DIR+GD V+V++AG+VIP+VV + R + F +CP C Sbjct: 355 VK-----------NKDIRIGDYVVVRKAGDVIPEVVRSLKERRDGSEEKFKMIEYCPHCG 403 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 SR+VR N AA+ C C +++ER+ HF SRDA NIEGLG++ ++ F+ Sbjct: 404 SRLVRKDNE------AAYYCLND-QCDFKKIERIIHFASRDAMNIEGLGEKIIEQFY--- 453 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 + F I DI+ L + +Q +I +I GFG S+ NL +I K + S+E+ +F LG Sbjct: 454 NLGFVKNIE-DIYDLYKHEQ----EIMDIEGFGKKSMDNLVAAIEKSKENSMEKLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I+ +GA++A +L+K E +I A L+ + VG+ I Q+I F + Sbjct: 509 IKGIGAKMADNLSK----------EFKSIDAMLEASTAKLLSIKDVGETIVQSINHFRND 558 Query: 619 PRNICAVEAL--LKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 P ++E L LK + ++ ++ S + + TGTL+ + R + ++Y+ +L Sbjct: 559 P---ASLELLMNLKALGLNMNYLKETTLLQESIFNGQTVCITGTLELMTRKEMKDYLARL 615 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 GA V+ +S+ TD +I G + GSKLEKA QLGV ++ EE+F Sbjct: 616 GANVTGSVSKNTDFLICGRDAGSKLEKANQLGVTVLTEEEF 656 >gi|330502846|ref|YP_004379715.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01] gi|328917132|gb|AEB57963.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01] Length = 786 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 224/644 (34%), Positives = 350/644 (54%), Gaps = 49/644 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + +S L E+ H+ YY +P + D+EYD L R A+ P+L P P Sbjct: 4 AAQRISELRNELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELV---TPESPTQ 60 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTL 130 ++GGE + +V H +P LSL + +DLR F + D I ++ Sbjct: 61 RVGGEALSAFGEVRHEVPMLSLGNAFEEDDLRAFDRSVQNGLGVSGGDLFGDGAEIEYSC 120 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189 EPK+DG +++RYE G+ V A RGDG +GED+++ +R I +P ++ P+++EVRG Sbjct: 121 EPKLDGLAVSLRYEHGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLQGEGWPQVLEVRG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV++ K+ F LN +G K +ANPRNAA+G LR+L+P +R L F +G+G+ S Sbjct: 181 EVFMPKSGFEELNARQAEIGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVGQVSG 240 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q MLQ+++ G P++ ++ A + YY ++ R +L YDIDG+V+KV+ Sbjct: 241 ELPGTQVAMLQQLKAWGVPISRELKLAKGVEACLDYYRDIGQRRMSLAYDIDGVVFKVNN 300 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+QLG RAR+P W I+HKF ++ T LLD++ Q+GRTG +TPVARL PV + G ++ Sbjct: 301 IEDQQQLGFRARTPHWAIAHKFPAQEELTELLDVEFQVGRTGAVTPVARLHPVKVAGVMV 360 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 NATLHN D + L + +GD V+++RAG+VIP+V+ ++ R +A+P Sbjct: 361 ANATLHNMDEVARL-----------GVMIGDTVIIRRAGDVIPQVMAVVPERRPENARPV 409 Query: 429 SFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P CP+C S V R + GK + +RC G L+C AQ + + HFVSR A + Sbjct: 410 QIPEQCPVCGSAVERTQLVRRSKGKESLSEGSVYRCVGRLSCQAQLKQAIIHFVSRRAMD 469 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG + ++ + I PAD++ L Q I + GF +VS L +I Sbjct: 470 IEGLGDKTIEQLVDEK----LIGSPADLYKLTFEQ------IIGLEGFAEVSSNKLLKAI 519 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + +L RFI++LGI VG E A+ LA+ S + + + ++ + +P Sbjct: 520 EDSKRPALARFIYALGIPDVGEETAKVLARSLASLERVREALPQVLTY----------LP 569 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 +G +A I F+++ N + ALL E + + E +S+E Sbjct: 570 DIGLEVAHEIHSFFEDEHNQQVISALLGECGLEL-QEEGELSAE 612 Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 14/155 (9%) Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNICAVEALLKEV 632 + Q A+ ++ DWL + + + + A+A+ EF+ +N + CA+E L++ Sbjct: 635 AAQKLAERFGSLEGVLGGDWLDMRQA--LPEKQAKAVREFFDSVENAQLACAIEQQLRD- 691 Query: 633 SPSIGRH---EKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 G H EK V+ + + V TGTL+ + R A+ + LGA V+ +S KT Sbjct: 692 ---FGMHWESEKKVAEGLPLAGQTWVLTGTLEVMSRDVAKGKLESLGAKVAGSVSAKTHC 748 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ G GSKL KA +LGVK+++E QFL L+ Y Sbjct: 749 VVAGPGAGSKLAKASELGVKVLDEAQFLDQLKAYG 783 >gi|289422752|ref|ZP_06424592.1| DNA ligase (NAD(+)) [Peptostreptococcus anaerobius 653-L] gi|289156931|gb|EFD05556.1| DNA ligase (NAD(+)) [Peptostreptococcus anaerobius 653-L] Length = 700 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 248/720 (34%), Positives = 382/720 (53%), Gaps = 60/720 (8%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I I +L I+ AR + L ++YH D YY P I D +YD + R + +PDL Sbjct: 18 IDIGSLDIDGARDLVGDLTYTLNYHSDSYYNKDNPEISDYQYDRMMRCLIGLEDKYPDLK 77 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P ++GG + H P LSL +++ E++R F R+ + + Sbjct: 78 A---PDSPSVRVGGRALEKFDQYRHQRPMLSLGNVFSEEEIRDFDRRV----RSSVSGDV 130 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + +E KIDG + + Y++G A RGDG GE+V+ I+ I TIP + ++ + Sbjct: 131 NYVVEFKIDGLSVGLTYDQGVLQIGATRGDGFIGENVTDNIKTIKTIP--IKIDEDRKLI 188 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 RGEVYISK DF A+N I YANPRN A+G LR+L+ R L+ F+ L Sbjct: 189 ARGEVYISKADFEAVNAYQIDHDLPVYANPRNLAAGSLRQLDSRLAAKRPLDIFIFNLEN 248 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 E+ K E + M LG +N G + ++ + R L YDIDG+V K Sbjct: 249 MDELGIKKHSESFEYMESLGLKINKGYKLCTNIDEVIDHIEYWTDKRGQLDYDIDGMVIK 308 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD ++ LG A+SPRW ++KF ++ T+LLDI+I++GRTG LTP A LEP+ + G Sbjct: 309 VDSLDQREVLGFTAKSPRWATAYKFPAEKKKTKLLDIEIEVGRTGTLTPTAVLEPIRLAG 368 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A+LHNEDYIK RDIR+GD VLV++AGE+IP+V+++ +ER Sbjct: 369 TSVSRASLHNEDYIK-----------ERDIRIGDTVLVQKAGEIIPQVLEVDFDERDGSE 417 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 F P CP+C VR G+ AA +C ++C AQ + HFVSRDA +IEG Sbjct: 418 IVFEMPKHCPVCGEETVR----LEGE--AAVKCI-NISCPAQIRRGIIHFVSRDAMDIEG 470 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G+ + E I+ AD++ L +E + G SV NL SI K Sbjct: 471 MGESIVKLLLDKE----LIKDIADLYYLD------PNDLEQLERMGKKSVANLMASIEKS 520 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L R I LGI+ VG + A+ LAK Y ++ I+A +++D LI++ G Sbjct: 521 KTNELWRLINGLGIKFVGLKGAKLLAKAY-------NNLDEIMAASSED---LIKIDEFG 570 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-------IENKKLVFTGTL 658 I++ ++ +F++ +N +E L + G + +N+ E E K+V TGTL Sbjct: 571 TIMSDSVEKFFEEDKNKETIEKLRR-----AGLNFENIKEEKTDRPMLFEGMKIVLTGTL 625 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++R+ A++ + LG ++ +S+ TD ++ G+ GSKL+KA LGVK+++E +F+ +L Sbjct: 626 PTMKRNDAKKIIEDLGGRATSSVSKSTDFVLAGEEAGSKLDKAISLGVKVIDEARFVSIL 685 >gi|21231024|ref|NP_636941.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768971|ref|YP_243733.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv. campestris str. 8004] gi|188992085|ref|YP_001904095.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv. campestris str. B100] gi|81305065|sp|Q4UTB0|DNLJ_XANC8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81794799|sp|Q8PAB5|DNLJ_XANCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254782312|sp|B0RUY2|DNLJ_XANCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21112648|gb|AAM40865.1| DNA ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574303|gb|AAY49713.1| DNA ligase [Xanthomonas campestris pv. campestris str. 8004] gi|167733845|emb|CAP52051.1| DNA ligase (NAD(+)) [Xanthomonas campestris pv. campestris] Length = 833 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 266/849 (31%), Positives = 419/849 (49%), Gaps = 166/849 (19%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + +L Q I + Y+ +P I D EYD L R +A+ A P+LA ++ P ++ Sbjct: 9 QRIDALRQRIEDANYRYHVLDEPQIADVEYDRLLRELEALEAAHPELATADSPT---QRV 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G +V H +P LSL ++ E++ +F+ RI ++K F EPK+DG Sbjct: 66 GYLAASRFAEVRHVLPMLSLGNAFSDEEVAEFVRRISERLERKQP---VFCAEPKLDGLA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 I++RYE+G+FV A RGDG +GEDVSA +R + IP R+ PE++EVRGEVY+ + Sbjct: 123 ISLRYEQGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGTGWPEVLEVRGEVYMPRAA 182 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE-IFAKGQY 255 F A N +M G K ANPRN A+G LR+L+ R L+FF +G+G+ ++ Sbjct: 183 FEAYNAQMRLQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVADGALPPTHS 242 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ML ++R GFPV+ V G+++YY + R LP+DIDG+VYK+D+ + Q+++ Sbjct: 243 TMLAQLREWGFPVSQLVEVVQGSEGLLTYYRRIGEARDGLPFDIDGVVYKLDDLAGQREM 302 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW ++HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN Sbjct: 303 GFVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVVVTNATLHN 362 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I LD +RVGD V+V+RAG+VIP+V ++ +R + P+ CP Sbjct: 363 ADQIARLD-----------VRVGDTVIVRRAGDVIPEVAGVVAEQRPAGTHAWQMPTQCP 411 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE----------- 484 +C S +VR+ G+ A RC+G L C AQ+ E +HFVSR A +++ Sbjct: 412 VCGSEIVRE----EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLV 465 Query: 485 --GLGKQQLDFFFKSEDPAFSIRI--PAD---IFTLQRRQQTST---TKIE-NILGFG-D 532 G+ + D + + D +R+ AD F + R+ + ++E ++G G D Sbjct: 466 DSGVVQGVADLYLLNVDQLLQLRLISTADSPHAFLREAREHLAAGAYAQVEQTMVGIGVD 525 Query: 533 VS--------------------------------VTNLYDSINKRRNISLERFIFSLGIR 560 ++ NL ++I R+ +LERF+F+LGI Sbjct: 526 LAGVQPAPQTWQADLLRAGLPAFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIE 585 Query: 561 HV--------------------------------GAEIARSLAKYYLSYQNFAQEINNII 588 HV G E+ARSL ++ N Q I++++ Sbjct: 586 HVGESTAKALSAWFGELDVIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGN-QQAIDDLL 644 Query: 589 --------AHNNDD----------WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA--L 628 AH L + +P V + AQ + + + A EA L Sbjct: 645 QRGVRIGDAHPPSPKLRGALSFAVLLEDLDIPKVTPVRAQQLAAATASFDALIASEADPL 704 Query: 629 LKEVSPS---------IGRHEKNV-----------------------SSEIENKKLVFTG 656 L+ P+ + R E + ++ + +V TG Sbjct: 705 LQAGVPAPVIASLQQWLARPENAALATAAQRAMDALLAQLPQADAVQAGPLDGQTVVITG 764 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL + R A++ + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L Sbjct: 765 TLAALTRDAAKQRLESLGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLA 824 Query: 717 LLQQYNTTL 725 L ++ + Sbjct: 825 FLSEHGQAV 833 >gi|294793797|ref|ZP_06758934.1| DNA ligase, NAD-dependent [Veillonella sp. 3_1_44] gi|294455367|gb|EFG23739.1| DNA ligase, NAD-dependent [Veillonella sp. 3_1_44] Length = 667 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 235/704 (33%), Positives = 375/704 (53%), Gaps = 46/704 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L+QE+++ YY P + D EYD R + A P+ S + P + Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIVS---SSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ S KV H P LSL +++ +++R F +R+ + K + +E KIDG Sbjct: 61 VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFASRVEKELGHKPSA---YVVELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L N PE IEVRGE Y+ ++ Sbjct: 118 AVNLHYENGMFVRAVTRGDGRIGEDVTANVRTIKSIPLYLE-NAPEFIEVRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P +R L FF + +G Q E Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEVGANIHSQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +LQ + F VN R T ++ N R LPYD DG+V KV+ F Q+ LG Sbjct: 237 LLQSLETFKFSVNPHYRVCKTIDEVIDAINYWGEKRHELPYDTDGMVIKVNSFDDQEVLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T L DI I +GRTG+LTP LE V + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETVLKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD V++ +A E+IP+V+ ++ +R+ PF+ P+ CP+ Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR + G+ AA RCT C A + E++ HFVSRDA NI+GLG ++ Sbjct: 406 CESPAVR----REGE--AAVRCTNK-HCPAIEKEQIIHFVSRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ I D++ L Q + ++ G S NL +I + L+R ++ Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAIADSKTRGLDRVLYG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A S + F L+ V +G +A +IVE+ Sbjct: 509 LGIRLIGSKAAGTIANVVKSMERFMTITKE----------ELVAVEEIGPTMADSIVEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q+P ++ +E L + +++E + +V TG L+ + R +A + + GA Sbjct: 559 QDPAHVEIIEGLTAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL++ Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLRE 662 >gi|258592875|emb|CBE69184.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [NC10 bacterium 'Dutch sediment'] Length = 684 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 244/720 (33%), Positives = 387/720 (53%), Gaps = 66/720 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R ++ L Q I H+ YY +P I D+E+D L +R + P+L P+ P + Sbjct: 8 RAQVDDLRQLIRRHEYLYYVLDRPEITDAEFDTLYQRLQTLETQHPELI---TPDSPTQR 64 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG V H LSL+ +N E+LR+F RI R + + +EPK+DG Sbjct: 65 VGGRPVEGFASVQHKAAMLSLDNAYNAEELREFEARIKRALPGE---RFTYVVEPKVDGL 121 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEVYISK 195 + + YE G+ V A RGDG GEDV+ + + IPR L L +EVRGE++I + Sbjct: 122 SVALLYEGGRLVRGATRGDGRYGEDVTQNLMTVRGIPRYLHGPLAACAALEVRGEIFIWR 181 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP--TDITRYLNFFVHGLGKTSEIFAKG 253 F LN E+ A G +P+ANPRNAA+G +R+ +P T++ R L+ F++G+ Sbjct: 182 QAFEKLNRELEAEGEEPFANPRNAAAGSVRQKDPRITEVRR-LDIFIYGVSYAEPDPFTE 240 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFH----------GIVSYYNEMKSIRSTLPYDIDGLV 303 ++ + ++ GF ++ R+ NT G++ Y E+++ R + D DG+V Sbjct: 241 HWQTMGQLLEAGFLLDPQDRK-NTLERYRRRCADIDGVIQAYLEIEAARDEIGCDCDGVV 299 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVD Q++LG PRW +++KF +QA++ + ID+ +GRTG LTP A L+PV I Sbjct: 300 VKVDAIEQQRRLGSTTHHPRWAVAYKFPARQATSIIRKIDVNVGRTGALTPTALLDPVEI 359 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GA I+ ATLHN D I+ L DIR GD VL++RAG+VIP ++ +I +R P Sbjct: 360 AGATISRATLHNADEIERL-----------DIREGDTVLIERAGDVIPHILRVIQEKRPP 408 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D+ PF FP CP+C ++ R G++V+ RCT AC A+ E L HF +R A +I Sbjct: 409 DSTPFCFPGQCPVCNAQAFR----PEGEVVS--RCTNS-ACLARLKESLLHFGARRAMDI 461 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 E LG+ ++ + +R AD++ L + + S TNL+++I Sbjct: 462 EHLGEAVVEQLVDRK----LVRELADLYRL------DVATLAELERLAQKSATNLHNAIQ 511 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + L R +F+LGIR+VG +A LA++Y S Q +A + Sbjct: 512 GSKGRGLSRLLFALGIRYVGEHVATILARHYGSMDRLEQAPEEELAE----------IFG 561 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQK 660 +G IAQ++ +++ P N +E L+EV S+ E V++E + K V TG L+ Sbjct: 562 IGPRIAQSVALYFRQPENRRQIEQ-LREVGVSM--KEAGVTAEPRPLAGKTFVLTGGLEG 618 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R +A+E + ++G V++ +S+KTD ++VG +PGSK + A++LGV ++E F L+ + Sbjct: 619 LTRDEAKELIVRVGGRVTSTVSKKTDFVVVGKDPGSKFDDAKRLGVPTLDEVAFKELVSR 678 >gi|293401241|ref|ZP_06645385.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305367|gb|EFE46612.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 662 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 242/697 (34%), Positives = 388/697 (55%), Gaps = 53/697 (7%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 +L +++ + YY +P + D+EYD + + +P + DPN ++GG + Sbjct: 9 ALRKQLDTYAYEYYVLDQPSVPDAEYDQAYQELLKLEDTYP---QYRDPNSITQRVGGVV 65 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + KVTH LSL +N+EDL+ F R+ K + + +E K+DG I++ Sbjct: 66 LDAFTKVTHKQQMLSLSNAFNLEDLQAFDERVRSIVPK-----VSYVVELKMDGLAISLH 120 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVYISKNDFLA 200 Y G+FV A RGDG GEDV+ +R I +IP ++I + +EVRGEV++ K F Sbjct: 121 YHDGRFVQAVTRGDGFVGEDVTNNVRTIASIP----MHIERMGDVEVRGEVFMPKKSFAE 176 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 LN + G +ANPRNAA+G +R+L+ +R L+ F++ + E L+ Sbjct: 177 LNAQREKNGEDVFANPRNAAAGSIRQLDSKIAASRKLDAFLYYYEDALGAGIQTHEEALE 236 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 M L VN R N+ + S+ EM R+ LPY+IDG+V KV+E + +QLG Sbjct: 237 TMEQLHIKVNPLRRVCNSMDEVWSFIQEMSEQRNDLPYEIDGMVIKVNELTAWEQLGTTV 296 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 ++PR+ I++KF ++ T+LLDI + +GRTG +TP A L PV + G ++ A LHNED I Sbjct: 297 KAPRYAIAYKFPAEEVVTKLLDIVLTVGRTGRITPNAVLAPVRVAGTSVSAAQLHNEDMI 356 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 K +DIR+ D V+V++AG++IP+VV +++ R+ + FP CP+C S Sbjct: 357 K-----------EKDIRIQDDVVVRKAGDIIPEVVGPLLDRRNGTQARYVFPKECPVCGS 405 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 +VR + AAH C C A+ +E + HF SRDA +I+ LG ++++FF K Sbjct: 406 ALVRLSDE------AAHYCINQ-DCPARVVESIIHFASRDAMDIDTLGDKKVEFFHKEG- 457 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 + DI+ L+ ++T I + GF + S L D+I + LE ++ LGI Sbjct: 458 ---LLNTIEDIYHLKDHKET----ILQMEGFKERSYQKLIDAIEASKQNPLEDLVYGLGI 510 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 R VG + A+ LAK++L+ + ++A + ++ L+ + +GDI AQ+IV F++ P Sbjct: 511 RQVGKKAAKVLAKHFLT-------MEKLMAASEEE---LVAIKDIGDITAQSIVAFFREP 560 Query: 620 RNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 +N+ ++ L+ + E+ + S K +V TG+LQ++ R++A+E + LGA VS Sbjct: 561 KNVELIDH-LRGFGLRMDSEEEIIQESMFTGKTVVLTGSLQQMTRNEAKELLESLGANVS 619 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +S+KTD++I G+ GSKL KAQ LGV M+E FL Sbjct: 620 GSVSKKTDLVIYGEAAGSKLTKAQSLGVATMDEATFL 656 >gi|205372454|ref|ZP_03225267.1| NAD-dependent DNA ligase LigA [Bacillus coahuilensis m4-4] Length = 635 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 244/674 (36%), Positives = 363/674 (53%), Gaps = 53/674 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L Q ++ + YY KP + D EYD+ + AI FP+L + P+ P Sbjct: 6 AEERVKELHQTLNEWNYAYYVLDKPQVSDQEYDSKLQELIAIEQEFPEL---KTPDSPSE 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +IG ++ KV H IP LSL +N EDL+ F +I +++ ++ + E KIDG Sbjct: 63 RIGAQVLEGFTKVQHDIPMLSLGNAFNEEDLKDFDRKI----RERVGDNFAYVCELKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I+++YE G FV A RGDG GED++A +R I +IP L L IEVRGE ++ K Sbjct: 119 LAISLKYEDGLFVQGATRGDGTIGEDITANLRTIRSIP--LRLKDAVTIEVRGEAFMPKR 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 F++LN+ G +P+ANPRNAA+G LR+L+P +R L+ F++ + E+ Sbjct: 177 SFVSLNEAKDEAGEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYSIANGEEVGMTEHA 236 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + L + LGF N RQ T ++ Y E R L Y+IDG+V KV+ FS Q +L Sbjct: 237 KALAYLDSLGFKTNPLRRQCETIEEVMMYVEEWTEKRQDLAYEIDGIVIKVNSFSQQDEL 296 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++ T L DI++ +GRTG +TP A LEPV + G + A+LHN Sbjct: 297 GFTAKSPRWAIAYKFPAEEVITVLKDIELSVGRTGAVTPTAILEPVRVAGTTVQRASLHN 356 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED I+ +DIR+GD V+VK+AG++IP+VV + R + + F PS CP Sbjct: 357 EDLIR-----------EKDIRIGDHVIVKKAGDIIPEVVSSLKERRTGEEKEFFMPSHCP 405 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S ++R + A RC C A E L HFVSR A NI+GLG++ + F Sbjct: 406 ECDSELIRIEDE------VALRCMNP-KCPALIRESLIHFVSRTAMNIDGLGEKVISQLF 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 K E I+ ADI+ L + Q + +I G+ S NL +I+ R SLE+ +F Sbjct: 459 KEE----LIQDVADIYFLTQEQLIALERI------GEKSALNLIQAIDASRENSLEKLLF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIRHVGA+ A++L AQE + + N LIR+ +GD +A +IV++ Sbjct: 509 GLGIRHVGAKAAKTL----------AQEFDTLTNLQNASKEELIRIDEIGDKMADSIVQY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQEYV 670 + P + L K + K ++ E K +V TG L + R++A+E + Sbjct: 559 FSMPEVHELIAELQKAEVNMQYKGPKKIAVEAGETSFAGKVVVLTGKLSILTRNEAKEKI 618 Query: 671 TQLGAVVSAILSRK 684 LG V+ +S+K Sbjct: 619 ELLGGKVTGSVSKK 632 >gi|7674018|sp|Q9ZFY8|DNLJ_THESK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|4235370|gb|AAD13188.1| NAD-dependent DNA ligase [Thermus sp. AK16D] Length = 674 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 244/713 (34%), Positives = 398/713 (55%), Gaps = 54/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E+AR+ ++ L I YH+ YY P I D+EYD L R + FP+L + P Sbjct: 1 MTLEEARRRVNELRDLIRYHNYLYYVLDAPEISDAEYDRLLRELKELEERFPEL---KSP 57 Query: 72 NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + F+ V H SL+ ++++++R F RI R +K +T+ Sbjct: 58 DSPTEQVGARPLEATFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK--GPFLYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G V+ A RGDG +GE+V+ + IPTIPR L+ +P+ +EVRGE Sbjct: 116 ERKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIPTIPRRLT-GVPDRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247 VY+ FL LN E+ G + + NPRNAA+G LR+ +P R F+ GLG Sbjct: 175 VYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATFYALGLG-LE 233 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E K Q+++L +R GFPV +G +A G+ Y R LP++ DG+V K+D Sbjct: 234 ETGLKSQHDLLLWLRERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEADGVVVKLD 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +L ++LG AR+PR+ +++KF ++ TRLL + Q+GRTG +TPV LEPV I G+ Sbjct: 294 DLALWRELGYTARTPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLEPVFIEGSE 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ TLHNE +I+ L D+R+GD VLV +AG VIP+V+ ++ R + +P Sbjct: 354 VSRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKERRTGEEKP 402 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +P CP C ++ K GK+ HRC L C A++ E ++H+ SR A +I+GLG Sbjct: 403 IIWPENCPECGHALI-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIQGLG 453 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ + +R AD++ L++ + N+ G+ S NL I + + Sbjct: 454 EKLIEKLLEK----GLVRDVADLYRLKKED------LVNLERMGEKSAENLLRQIEESKG 503 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 LER +++LG+ VG +AR+LA + ++ ++ +D L+ V VG++ Sbjct: 504 RGLERLLYALGLPGVGEVLARNLALRF-------GHMDRLLEAGLED---LLEVEGVGEL 553 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A+AI+ ++P V LKE + E+ + ++ V TG L + R + + Sbjct: 554 TARAILNTLKDPEFRDLVRR-LKEAGVEMEAKEREGEA-LKGLTFVITGELSR-PREEVK 610 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV ++EE+ L+++ Sbjct: 611 ALLRRLGAKVTDSVSRKTSFLVVGENPGSKLEKARALGVPTLSEEELYRLIEE 663 >gi|319943831|ref|ZP_08018112.1| DNA ligase [Lautropia mirabilis ATCC 51599] gi|319743064|gb|EFV95470.1| DNA ligase [Lautropia mirabilis ATCC 51599] Length = 779 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 224/585 (38%), Positives = 328/585 (56%), Gaps = 45/585 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + +L E+ H+ YY+ P + DS YD L + +P L P+ P + Sbjct: 24 RARVQTLRAELLAHNRAYYEEDAPTVEDSVYDGLFLELQQLEARWPALL---TPDSPTQR 80 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + VTH +P SL ++ D+ F R+ +D F+ PK+DG Sbjct: 81 VGSAPSAGFGTVTHRVPMRSLSNAFSEADVLAFDRRLKSLLGVTED--FAFSATPKLDGL 138 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 T+RYE G+ V A RGDG +GE+++A +R + +P LS PE++EVRGEV + K D Sbjct: 139 AATLRYEHGRLVQGATRGDGVTGENITANLRTVRGVPAQLSGPAPEVLEVRGEVLMLKED 198 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI--FAKGQ 254 FLALN A G K +ANPRNAA+G LR+L+ +R L F+ +G+G+ S+ Q Sbjct: 199 FLALNRAQEARGDKLFANPRNAAAGSLRQLDARVTASRPLTFYAYGIGEVSDPDQVPASQ 258 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + ML + LGF G + ++ YY S+R+TLPY IDG+VY++D+ LQ+Q Sbjct: 259 HGMLVWLGTLGFLPPPGAERVQGVSALLDYYRHTGSVRATLPYAIDGVVYQLDDRHLQEQ 318 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 G AR+PR+ ++HK+A ++A T L DI +Q+GRTG+LTPVARLEPV +GG ++NATLH Sbjct: 319 AGFVARAPRFALAHKYAAEEAVTTLQDIFVQVGRTGVLTPVARLEPVFVGGVNVSNATLH 378 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED ++ + + +GDRV+V+RAG+VIP+VV +++++R DA+ F PS C Sbjct: 379 NEDEVR-----------RKHLLIGDRVIVRRAGDVIPEVVGVVLDQRPADAREFRMPSQC 427 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V R P A RC GGL CSAQ+ L HF R A +I+GLG D Sbjct: 428 PVCGSAVQR--LPSE----ANWRCVGGLFCSAQRKRALWHFAHRRAMDIDGLG----DVL 477 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + + PAD++ L ++ + G+ S NL +I+ R+ SLERF+ Sbjct: 478 VEQLVDGNLVHEPADLYRLD------AATLQALPRMGEKSAANLLAAIDGSRHPSLERFL 531 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 F+LGIR VG E AR LA+ + + F DW +L+ Sbjct: 532 FALGIRAVGEEAARVLARAFGDLEGFLAA----------DWATLL 566 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 40/67 (59%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 + +V TGTL+ + R +A+ + LG + +S +T ++ G+N GSKL KA+ LG+ + Sbjct: 708 GQSIVVTGTLEHLSRDQAEAMIRALGGKPAGSVSGRTAFVVAGENAGSKLTKARSLGISV 767 Query: 709 MNEEQFL 715 + E F Sbjct: 768 LAEADFF 774 >gi|120602570|ref|YP_966970.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4] gi|166215379|sp|A1VDM7|DNLJ2_DESVV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|120562799|gb|ABM28543.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4] Length = 797 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 243/719 (33%), Positives = 386/719 (53%), Gaps = 58/719 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+AR+ + L ++ H+ YY+ P I D+EYD L R + +P L D P Sbjct: 37 EEARQRAAQLRADLERHNRLYYELDTPEISDAEYDVLYRELVGLERRWPAL---RDEASP 93 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE+ L K H++ SL+ ++ ++ F+ R+Y D F +PK+ Sbjct: 94 TQRVGGEVLEGLEKQAHTLRMYSLDNAFSRDEWGAFMQRMY---NALPDAPSAFWCDPKM 150 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193 DG + + YE G F A RG+G GE V+A +R + +P L ++P IEVRGEV I Sbjct: 151 DGLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVVI 210 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +K DF LN A G K +ANPRNAA+G +R+L+ T R L F +G+G+ Sbjct: 211 AKADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGGT 270 Query: 253 GQYE----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ ++R GF R + + +YY + + R +L +IDG+V K+D+ Sbjct: 271 APWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLDD 330 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+ LG AR+PRW ++ KF QA TRL DI +Q+GRTG+LTPVA LEPV +GG + Sbjct: 331 TEAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVEV 390 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHNED I+ + + +GD VLV+RAG+VIP+VV +V ER D +PF Sbjct: 391 SRATLHNEDEIR-----------AKGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERPF 439 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C S VVR G++ AHRC + C A + + + HFVS+ ++ G+G+ Sbjct: 440 VFPENCPECDSPVVR----PQGEV--AHRCV-NVMCPAVRRQSIIHFVSKAGLDVRGVGE 492 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN-KRRN 547 + + + P +F+L + + E + G S N +++ R Sbjct: 493 RWVQQLVDG----GHVTSPVGLFSLTK---LDLMRFERM---GPTSAANFVTALDAARTG 542 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L R I +LGIRHVG + AR+LA NF ++ A D +L ++P +G Sbjct: 543 ATLVRLICALGIRHVGEQTARTLAA------NF----TDLDALREADAETLQQLPDIGPE 592 Query: 608 IAQAIVEFYQNPRNICAVEALL-------KEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 +A +I F+ N N+ +E L ++ +P + ++ K++FTG+L + Sbjct: 593 VAGSIRTFFANEGNLELLERLRAIGLWPKRQDAPPAPEGADAIVRPLQGLKVLFTGSLTR 652 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A++ GA +++ +++ D+++VG PGSKLEKA++LG+++M E F +L+ Sbjct: 653 VGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAMLE 711 >gi|332686164|ref|YP_004455938.1| DNA ligase [Melissococcus plutonius ATCC 35311] gi|332370173|dbj|BAK21129.1| DNA ligase [Melissococcus plutonius ATCC 35311] Length = 678 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 248/724 (34%), Positives = 397/724 (54%), Gaps = 62/724 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++ +A L+++++ + YY KP + D YD L + I A+PDL S+ P Sbjct: 7 LTLTEATDRADELKEQLNQYSYEYYVQDKPSVEDYVYDRLYKELSEIETAYPDLITSDSP 66 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++GG++ KV H SL ++ ED+ F RI+R D + E Sbjct: 67 T---QRVGGKILPGFEKVHHDSTMYSLNDGFSKEDIYNFDERIHRL----TDQPFTYCCE 119 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++RY+ G+ V A RGDG GE+++ ++ + +IP L LN IEVRGE Sbjct: 120 LKIDGLAISLRYKNGELVLGATRGDGTIGENITENLKTVRSIP--LRLNKSISIEVRGEC 177 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F+ LN E G +ANPRNAA+G LR+L+ + IT R LN F++ + + Sbjct: 178 YMPKTSFVRLNQEREEEGCDIFANPRNAAAGSLRQLD-SRITAKRNLNTFLYTVADFGSM 236 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK Q++ L ++ +G N R T + S+ E R+ LPY+IDG+V KV+EF Sbjct: 237 TAKNQFDALNELTTIGIRTNPEKRLCQTIDEVWSFIEEYHEKRNELPYEIDGIVIKVNEF 296 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 S Q +LG ++PRW I++KF ++A T + +I+ +GRTG++TP A ++PV I G ++ Sbjct: 297 SEQNKLGFTVKAPRWAIAYKFPPEEARTTVNEIEWTVGRTGVVTPTAIMDPVRIAGTTVS 356 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN D+I+ +DIR+ D V++ +AG++IP+V +V R ++ P+ Sbjct: 357 RASLHNFDFIQ-----------MKDIRLKDEVIIYKAGDIIPEVAKALVETRTNESVPYQ 405 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 PS CP+CQS +V L+ + A RC C AQ E L HFVSR+A NI GLG + Sbjct: 406 APSHCPVCQSELVH-LDEE-----VALRCINP-KCPAQIKEGLNHFVSRNAMNIAGLGPR 458 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L ++ + ++ AD++ + Q + KI+ + S N+Y +I +N S Sbjct: 459 ILAQLYEKK----LVKDVADLYFVTEEQLMTLEKIK------EKSANNIYQAIAASKNNS 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +E IF LGIRHVGA+ A+ LA+++ + +Q + S++ + +G+IIA Sbjct: 509 VEHLIFGLGIRHVGAKAAKILAEHFGDLKTLSQA----------NQESIMVLDSIGEIIA 558 Query: 610 QAIVEFYQNPRNICAVEALLKEVSP-------SIGRHEK-NVSSEIENKKLVFTGTLQKI 661 +++V +++ V+ LL E+ + R E+ N S +NK +V TG L Sbjct: 559 ESVVAYFEK----IEVQELLVELEKAGINFKYTGTRPEQLNGDSFFKNKTVVLTGKLTNY 614 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+E + LG V+ +S+KTDI+I G+ GSKL A++L V + +E Q L+ + Sbjct: 615 TREEAKEQIESLGGNVTNSVSKKTDIVIAGEASGSKLAAAKELEVTVWDENQLTEALENH 674 Query: 722 NTTL 725 + T+ Sbjct: 675 HPTV 678 >gi|195938757|ref|ZP_03084139.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. EC4024] Length = 556 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 224/593 (37%), Positives = 355/593 (59%), Gaps = 47/593 (7%) Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 1 MDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 60 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 61 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 120 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 121 PDTHLGRLLQ-FKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSL 179 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++ Sbjct: 180 EQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVS 239 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + Sbjct: 240 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVV 288 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP++CP+C S V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 289 FPTYCPVCGSDVER----VEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 342 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 343 IIDQLVEKE----YVHTPADLFKL------TAGKLTGLERMGPKSAQNVVNALEKAKETT 392 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A E +I L +VP VG ++A Sbjct: 393 FARFLYALGIREVGEATAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVA 442 Query: 610 QAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F+ N + LL E +P + E+ + S K +V TG+L ++ R Sbjct: 443 SHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDD 501 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 502 AKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 554 >gi|167038089|ref|YP_001665667.1| NAD-dependent DNA ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116496|ref|YP_004186655.1| NAD-dependent DNA ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|254781439|sp|B0KBN6|DNLJ_THEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166856923|gb|ABY95331.1| DNA ligase, NAD-dependent [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929587|gb|ADV80272.1| DNA ligase, NAD-dependent [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 662 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 247/707 (34%), Positives = 398/707 (56%), Gaps = 51/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L ++I+YH+ YY +P I D EYD L R + +P+L + P+ P + Sbjct: 4 KERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEL---KTPDSPSQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE TH +P LSL ++ +LR F R+ ++ + + +E KIDG Sbjct: 61 VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRV-----REAVGDVEYVVELKIDGL 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YEKG F + RGDG GE+V+ ++ I +IP L ++ + VRGEV++ + Sbjct: 116 SVELIYEKGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVSLV--VRGEVFMPRAS 173 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+E +G +ANPRNAA+G LR+L+P R L+ F+ L K K E Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ + GF + ++ + ++ E++++R LPYDIDG V KV++ ++ LG Sbjct: 234 TLEFLNEQGFKIIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + A+ PRW I+ K+ ++ T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVAISGSVVSRATLHNE 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYIK +DIR+GD V+V++AGE+IP+VV+++ ER + F P CP Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VR L A RCT GL C AQ L + HF S+DA +IEGLG ++ Sbjct: 403 CGALAVRLLGE------AIRRCT-GLNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLL- 454 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 S+ +I AD++ L+ ++ GD SV NL ++I + + L+R +F Sbjct: 455 SKGLIHNI---ADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G++ A+ +A+++ + ++NI+ +D+ L P +G +A++IV F+ Sbjct: 506 LGINLIGSKAAQVIAEHF-------KTMDNIMKAKFEDFTQL---PDIGPKMARSIVSFF 555 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 +N+ +E LK ++ + K V++ E K V TG L R +A + + G Sbjct: 556 AEKQNVEIIEK-LKNAGVNMKKIPKEKVNNIFEGKTFVLTGALGNYTREEATRIIEERGG 614 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 V+ +S+KTD ++VG +PGSKL+KAQ+LG+KI++E+QF +L+ N Sbjct: 615 KVTNSVSKKTDYVLVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGEN 661 >gi|326390897|ref|ZP_08212448.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200] gi|325993045|gb|EGD51486.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200] Length = 662 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 248/707 (35%), Positives = 399/707 (56%), Gaps = 51/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L ++I+YH+ YY +P I D EYD L R + +P+ + P+ P + Sbjct: 4 KERVKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---KTPDSPSQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE TH +P LSL ++ +LR F R+ ++ + + +E KIDG Sbjct: 61 VGGEPLKEFEPFTHVVPMLSLANAFSEGELRDFDRRV-----REAVGDVEYVVELKIDGL 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G F + RGDG GE+V+ ++ I +IP L ++ + VRGEV++ + Sbjct: 116 SVELIYENGIFTVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVSLV--VRGEVFMPRTS 173 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+E +G +ANPRNAA+G LR+L+P R L+ F+ L K K E Sbjct: 174 FEKLNEEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQKIEGRKFKTHIE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ GF V ++ + ++ E++++R LPYDIDG V KV++ ++ LG Sbjct: 234 TLEFLKEQGFKVIPIHKKCSNIDEVIKEIEEIRNLRDKLPYDIDGAVVKVNDLEKREILG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + A+ PRW I+ K+ ++ T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE Sbjct: 294 QTAKDPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYIK +DIR+GD V+V++AGE+IP+VV+++ ER + F P CP Sbjct: 354 DYIK-----------EKDIRIGDTVIVQKAGEIIPEVVEVVKEERTGQEREFVMPDRCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VR G+ A RCT GL C AQ L + HF S+DA +IEGLG ++ Sbjct: 403 CGALAVR----LPGE--AIRRCT-GLNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLL- 454 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 S+ +I AD++ L+ ++ GD SV NL ++I + + L+R +F Sbjct: 455 SKGLIHNI---ADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G++ A+ +A+++ + ++NI+ +D+ L P +G +A++IV F+ Sbjct: 506 LGINLIGSKAAQVIAEHF-------KTMDNIMKAKFEDFTHL---PDIGPKMARSIVSFF 555 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 +N+ +E LK ++ + K VS+ E K V TG L+ R +A + + G Sbjct: 556 AEKQNVEIIEK-LKNAGVNMKKLSKGKVSNIFEGKTFVLTGALENYTREEATRMIEERGG 614 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 V+ +S+KTD I+VG +PGSKL+KAQ+LG+KI++E+QF +L+ N Sbjct: 615 KVTNSVSKKTDYILVGKDPGSKLKKAQELGIKIIDEKQFEEMLKGEN 661 >gi|326334401|ref|ZP_08200613.1| NAD-dependent DNA ligase LigA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693368|gb|EGD35295.1| NAD-dependent DNA ligase LigA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 670 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 226/703 (32%), Positives = 378/703 (53%), Gaps = 54/703 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ +L E++ H+ YY P I D E+D + + H +P + +DPN P ++ Sbjct: 7 QQIETLRTELNEHNYNYYVLDSPTISDYEFDQKLKHLQELEHQYP---QYKDPNSPTVRV 63 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ + + H SL+ ++ E+L+++ R+ + K + I F E K DG Sbjct: 64 GGEITKNFPTIVHEFRMYSLDNSYSKEELKEWEKRVLKLLGK---DKISFVCELKYDGAS 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I + Y+ GK V A RGDG G++++A +R I ++P L + PE +RGE+ I K F Sbjct: 121 IDLTYDAGKLVQAVTRGDGIQGDEITANVRTIRSVPLTLKGDYPEYFHIRGEIIILKEGF 180 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254 +N++ IA G PY NPRN ASG L+ + T++ + L ++V G + + + Q Sbjct: 181 KRMNEQRIAEGEDPYMNPRNTASGSLKLQDTTEVAKRPLDCLLYYVVG----NNLPIQTQ 236 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E L+K R GF V + ++ ++ + N + R LPY+ DG+V KV++F Q++ Sbjct: 237 FEGLRKAREWGFKVPTQSKLCHSTQEVMDFINYWDTHRHDLPYETDGVVIKVNDFQAQQE 296 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++SPRW I++KF ++ +T L I Q+GRTG +TPVA L PV + G ++ A+LH Sbjct: 297 LGYTSKSPRWAIAYKFKAEEVTTTLESISYQVGRTGAITPVANLTPVLLAGTIVKRASLH 356 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L D+ +GD+V V++ GE+IPK+ + +ER +A +F + C Sbjct: 357 NADQIAKL-----------DLHLGDQVFVEKGGEIIPKITGVKTDERKANATTVTFITHC 405 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + +VR+ A H C C Q R++H++SR A +IEGLG + ++ Sbjct: 406 PECGTALVRNEGE------AQHYCPNAYGCPPQITGRIQHYISRKAMDIEGLGSETVELM 459 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ A I AD++ L+ Q I+N+ G+ S N+ + I K + I +R + Sbjct: 460 FR----AGLIHNYADLYELKVEQ------IQNLERMGERSAKNIIEGIEKSKEIPFDRVL 509 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG +A+ A+ Y + + F + + L ++ +GD IAQ+++E Sbjct: 510 FALGIRMVGETVAKKFARIYKTLEAF----------RSATYEQLTQIDEIGDRIAQSVIE 559 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ + RN +E L + N +S ++ K LV +G + R + + + Sbjct: 560 FFADDRNKVILERLQSYGVQFALKETANFPLSDILKGKTLVVSGVFARYSRDELKALIEN 619 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714 G V + +S KT ++ G+N G SKLEKA QLG+ I++E++F Sbjct: 620 HGGKVGSSISSKTSYVVAGENMGPSKLEKATQLGIPILSEKEF 662 >gi|303231514|ref|ZP_07318244.1| DNA ligase (NAD+) [Veillonella atypica ACS-049-V-Sch6] gi|302513857|gb|EFL55869.1| DNA ligase (NAD+) [Veillonella atypica ACS-049-V-Sch6] Length = 666 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 231/703 (32%), Positives = 385/703 (54%), Gaps = 46/703 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L++E+++ YY P + D EYD R + A P+ P+ P + Sbjct: 4 KDRIEQLQKELTHAQYLYYVKDNPTMSDFEYDQKYRELVDLETAHPEYIV---PSSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + + KV H P LSL +++ +++R F R+ + + + + +E KIDG Sbjct: 61 VGIKADGPFEKVVHGRPMLSLSNVFSADEVRAFDQRVTKELGHQ---TKAYVVELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L N PE IE+RGE Y+ ++ Sbjct: 118 AVNLHYENGIFVRAVTRGDGKVGEDVTANVRTIKSIPLYLE-NAPEFIEIRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P +R L FF + +G S Q E Sbjct: 177 FKRINEERDEEGVPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSESGANIHTQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L + F VN R NT ++ N R LPYD DG+V KV++F+ Q+ LG Sbjct: 237 LLHTLENFHFSVNPHYRVCNTIDEVIEAINYWGEKRHELPYDTDGMVIKVNDFNDQEMLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T + DI I +GRTG+LTP LEPV + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETVVKDITINVGRTGVLTPTGELEPVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD VL+ +A E+IP+V+ ++ +R PF+ P+ CP+ Sbjct: 357 DFIT-----------EKDIRIGDHVLIHKAAEIIPEVIRVLPEKRTGSEVPFTIPNRCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR + G+ AA RCT C A + E++ HF SRDA NI+GLG ++ Sbjct: 406 CESPAVR----REGE--AAIRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I D++ L +T I + G S NL +I ++ L+R +F Sbjct: 459 EK----LITNVVDLYHL------TTESIMGMDRMGKKSADNLVKAIADSKSRGLDRVLFG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A N + ++ + + D+ L+ V +G +A +I+E+ Sbjct: 509 LGIRLIGSKAAGTIA-------NVVKSMDRFLTISKDE---LVAVEEIGPTMADSIIEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++P++I + +L++ ++ +E+E + +V TG L+ + R +A + + + GA Sbjct: 559 EDPQHIKIINSLIEAGLKMDVDVQEAAGNEMEGEIVVLTGKLEVMGRSEAGKLLEKHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL+ Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVINEEEFIELLK 661 >gi|56962859|ref|YP_174586.1| NAD-dependent DNA ligase LigA [Bacillus clausii KSM-K16] gi|81366743|sp|Q5WJ30|DNLJ_BACSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56909098|dbj|BAD63625.1| DNA ligase [Bacillus clausii KSM-K16] Length = 671 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 241/709 (33%), Positives = 379/709 (53%), Gaps = 80/709 (11%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 YH YY P + DSEYD L + +PDL + P+ +IGG S KV Sbjct: 22 YH---YYVLDTPKVPDSEYDRLMNELLQLEADYPDLVTEDSPS---VRIGGPPAPSFKKV 75 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H +P +SL +N EDLR F R+ ++ + + E K DG +++ YE GK V Sbjct: 76 AHRVPMMSLSNAFNEEDLRAFDRRV----RQAVGEHVSYVCELKFDGLAVSLTYENGKLV 131 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 A RGDG GED++ +R +P IP L L P IEVRGE Y+ K F LN+ G Sbjct: 132 RGATRGDGTIGEDITNNLRTVPAIP--LRLKQPYSIEVRGEAYMPKASFERLNEAKEQAG 189 Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 + +ANPRNAA+G LR+L+P R L+ F + +G+ + ++ L ++ LGF V Sbjct: 190 EEKFANPRNAAAGSLRQLDPKIAAKRNLSLFAYSIGEVEGKNVQTHFDSLMFLKELGFKV 249 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 N + T +++Y + R LPY+IDG+V KV+ + ++LG A+SPRW + Sbjct: 250 NEEAAECETIEDVIAYTEKWSERRHELPYEIDGVVVKVNSLADHEKLGFTAKSPRWATAF 309 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 KF ++ T L DI++ +GRTG++TP A L+PV + G + A+LHNED I+ Sbjct: 310 KFPAEEVLTVLRDIELNVGRTGVVTPTALLDPVLVAGTTVRRASLHNEDLIR-------- 361 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV------- 441 +D+++GD V+VK+AG++IP+VV ++ ++R + F P+ CP C S + Sbjct: 362 ---EKDVKLGDTVIVKKAGDIIPEVVGVLTDKRTGEEVDFHMPTECPECHSVLERLEGEV 418 Query: 442 -VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 +R LNPK C AQ E L HFVSR+A NI+GLG++ + F + Sbjct: 419 ALRCLNPK---------------CPAQIREGLIHFVSRNAMNIDGLGEKVISQLFLHQ-- 461 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 + AD+ L ++ ++E + G+ SV NL +I + SLER +F LGIR Sbjct: 462 -----LIADVADLYLLEREELLQLERM---GEKSVDNLLAAIEASKENSLERLLFGLGIR 513 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 VGA+ A++LA + + + + + L+ V +G+ +A +IV ++Q P Sbjct: 514 FVGAKAAKTLAYEFETMERLQEAT----------FEQLLAVNEIGEKMADSIVSYFQKPE 563 Query: 621 NICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVT 671 V LL++++ + G + ++ E K +V TG L + R +AQE + Sbjct: 564 ----VATLLEKLANAGVNMTYTGPKKAAIAEEAGVFAGKTVVLTGKLSQWTRKEAQEKIE 619 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LG V+ +S+KTD+++ G++ GSK +KA+ +G++I EEQF ++Q Sbjct: 620 ALGGTVTGSVSKKTDLVVAGEDAGSKQKKAESIGIEIWTEEQFTQAVEQ 668 >gi|227543584|ref|ZP_03973633.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A] gi|300909387|ref|ZP_07126848.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112] gi|227186424|gb|EEI66495.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A] gi|300893252|gb|EFK86611.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112] Length = 680 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 250/721 (34%), Positives = 393/721 (54%), Gaps = 56/721 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M ++Q P++ L++++A+ E+ L +++ YY+ P + D YD +R + Sbjct: 1 MSQKQ-TPVKELTLQEAQDEIKPLRAKLTEWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP L ++ P ++GG L KV H IP LS+ +++IE+L F R Q+ Sbjct: 60 QFPQLLSADSPT---QRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQR----QQE 112 Query: 121 KDDNSIF--FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 D + + LE KIDG +++ YE GK V + RG+G GEDV+A +R I ++P Sbjct: 113 NRDVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGTIGEDVTANVRTIKSVP--AE 170 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLN 237 L P IEVRGE Y+ K F LN + A G +ANPRNAA+G LR+L+P R L+ Sbjct: 171 LPEPLSIEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELD 230 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F++ + + ++ K Q E L +MR LGF VN R + I Y E + R L Y Sbjct: 231 TFIYYVPEYQKLGVKTQAEALDRMRELGFNVNLNNRVVHNREEIEKYIEEYTAQRDKLTY 290 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 IDG+V KV++ + LG + PRW I++KF ++ +T + DI +GRTG +TP A Sbjct: 291 GIDGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAV 350 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 ++PV + G ++ A+LHN DY++ +DIR+GD V + +AG++IP++ + Sbjct: 351 MDPVQLAGTTVSRASLHNPDYLR-----------EKDIRIGDTVYLHKAGDIIPEISKVD 399 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R D+ + P+ CP+C S +V G++ A RC + C AQ E L HF S Sbjct: 400 LTKRPADSVEYEIPTKCPVCSSELVH----LDGEV--ALRCINPM-CPAQIKEGLAHFAS 452 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R+A NI+GLG + ++ + E I A ++ L Q + K FG+ S N Sbjct: 453 RNAMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLTLDK------FGEKSTAN 502 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L SI+ RN S+ER +F LGIRHVGA+ AR + +++ + + NDD +S Sbjct: 503 LLTSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHFGDLDSLMKA--------NDDEIS 554 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLV 653 I +G I ++IV ++ N + + ++ L+EV + R N SE +++V Sbjct: 555 AISG--IGPTIGESIVTYFANQQVVKLIDE-LREVGVNFAYLGSRSNANPDSEWNGRRVV 611 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TG L ++ R +A+ ++ GA V+ +S+KTDI+I G + GSKL KAQ LG+ + NE+Q Sbjct: 612 LTGKLTEMTRGEAKLWLENHGAKVTGSVSKKTDIVIAGADAGSKLTKAQDLGIDVWNEQQ 671 Query: 714 F 714 F Sbjct: 672 F 672 >gi|325274411|ref|ZP_08140498.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51] gi|324100446|gb|EGB98205.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51] Length = 776 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 219/621 (35%), Positives = 342/621 (55%), Gaps = 44/621 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + L E+ H+ YY +P + D+EYD L A+ P L P+ P Sbjct: 3 AETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLV---TPDSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + +V H +P LSL + DLR+F R+ + ++ ++ EPK+DG Sbjct: 60 RVGGAALSAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQP--GAVDYSCEPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 +++ Y G V A RGDG +GED+SA +R + IP ++ P ++EVRGEVY+SK Sbjct: 118 LAVSLLYRDGLLVQGATRGDGTTGEDISANVRTVRNIPLKLHGEGWPAVLEVRGEVYMSK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN G K +ANPRNAA+G LR+L+ +R L F +G+G+ S Sbjct: 178 AGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSASIGDSH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L++++ G P++ ++ A + YY ++ R++LPY+IDG+V+KV+ + Q++ Sbjct: 238 IGILEQLKAWGLPISRELKHAAGIEECLDYYRDIGERRNSLPYEIDGVVFKVNSLAAQRE 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T +LD++ Q+GRTG +TPVARL+PV + G ++NATLH Sbjct: 298 LGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L +R+GD V+++RAG+VIP+V+ +++ R DA+P + PS C Sbjct: 358 NMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLERRPDDARPVAVPSEC 406 Query: 435 PICQSR------VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S+ V R +T A +RC G LAC AQ + + H+VSR A +I+GLG+ Sbjct: 407 PVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGE 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ D I PAD++ LQ Q + + GF +VS L D+I + Sbjct: 467 KSVEQLV---DEGL-IGSPADLYKLQFEQ------VVGLEGFAEVSTRKLLDAIEASKRP 516 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL RFI++LGI VG E A+ LA+ S Q + ++ + +P +G + Sbjct: 517 SLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTY----------LPDIGLEV 566 Query: 609 AQAIVEFYQNPRNICAVEALL 629 A I F+++ N ++ LL Sbjct: 567 AYEIHNFFEDEHNQKVIQQLL 587 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + SL I L I VG A L S ++ IIA + D +R L Sbjct: 606 STSLAGMIAKLDIASVGPTGAEKLVAKLDS-------LDKIIAADGID----LRQALAAK 654 Query: 607 IIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRH---EKNVSS--EIENKKLVFTGTL 658 A A+ EF+++ N A+EA L + G H EK V+ + + V TGTL Sbjct: 655 Q-ADAVREFFKDEANQQLARAIEAQLL----AFGMHWTSEKKVAEGLPLAGQTWVLTGTL 709 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A++ + LGA V+ +S +T ++ G GSKL KA +LGVK+++EE F+ L Sbjct: 710 ERMSRDVAKDKLESLGAKVAGSVSGRTQCVVAGPGAGSKLAKASELGVKVLDEEAFVAFL 769 Query: 719 QQYNTTL 725 T+ Sbjct: 770 AGQGITI 776 >gi|126661836|ref|ZP_01732835.1| DNA ligase [Flavobacteria bacterium BAL38] gi|126625215|gb|EAZ95904.1| DNA ligase [Flavobacteria bacterium BAL38] Length = 663 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 240/701 (34%), Positives = 374/701 (53%), Gaps = 57/701 (8%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + +L +E++ H+ YY PII D E+D ++ + PD D N P ++GG Sbjct: 7 IKNLREELNQHNYNYYVLDNPIISDFEFDQKLKQLQDLEIQNPDFF---DENSPTQRVGG 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + + + H SL+ ++IEDL+ + TRI + D + +T E K DG I+ Sbjct: 64 MVTKNFETIKHEYRMYSLDNSYSIEDLQDWETRIQKVL---GDVPLEYTCELKYDGASIS 120 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 I YE G+ V A RGDG G+DV+ I+ I +P L + PE ++RGE+ + F Sbjct: 121 ISYENGRLVRAVTRGDGVQGDDVTNNIKTIKAVPIHLKGDFPEKFDIRGEIILPFAGFEK 180 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQYE 256 +N E+I +G PY+NPRN ASG L+ + ++ + L +FV G + + K Q+E Sbjct: 181 MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYFVIG----NNLPFKTQFE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQK R GF V N + A + + + N R LPY+ DG+V KV+ Q++LG Sbjct: 237 GLQKARDWGFKVPNQSKLAKNLNEVFEFINYWDKHRHDLPYETDGVVIKVNNIQHQEELG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW +++KF +Q +T+L I Q+GRTG +TPVA LEPV + G ++ A+LHN Sbjct: 297 YTAKSPRWAMAYKFKAEQVTTQLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNA 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIR+GD V V++ GE+IPK+ I V +R A+P + + CP Sbjct: 357 DQIEKL-----------DIRIGDDVFVEKGGEIIPKI--IAVAKRGNQAEPTKYITHCPE 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQ+ +VR A H C C Q + R++HF++R A +I+GLG + + F Sbjct: 404 CQTELVRSEGE------ANHFCPNFYGCPPQIIGRIQHFITRKAMDIDGLGGETVALLFN 457 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A + AD++ L++ Q ++ + S NL + I K + I ER +++ Sbjct: 458 ----AGLVTNYADLYELKKEQIVPLERM------AEKSAENLINGIEKSKTIPFERVLYA 507 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR+VG +A+ LAK+Y S A N + LI V +GD IAQ++++F+ Sbjct: 508 LGIRYVGETVAKKLAKHYKSIDAIA----------NASVMDLILVDEIGDKIAQSVMQFF 557 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 N NI ++ LK + ++ VS +++ K V +G + R + ++ + G Sbjct: 558 DNQENIRIIDK-LKSFGVQLESDVEDVLVSEKLKGKTFVVSGVFEIYSRDELKKSIEDNG 616 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714 V + +S KTD +I GDN G SKLEKA QL + I++E F Sbjct: 617 GKVGSSISSKTDFVIAGDNMGPSKLEKANQLKIAIISEIDF 657 >gi|259502571|ref|ZP_05745473.1| DNA ligase [Lactobacillus antri DSM 16041] gi|259169461|gb|EEW53956.1| DNA ligase [Lactobacillus antri DSM 16041] Length = 678 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 238/713 (33%), Positives = 386/713 (54%), Gaps = 54/713 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ L++ A++E++ L Q+++ YY+ P + D YD +R + FP+L Sbjct: 6 PVDQLTLAAAKQEIAPLRQQLTKWGREYYEQDNPSVEDYVYDRAYQRLVELEQRFPELKT 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 S+ P +GG L KVTH IP LS+ +++I++L F R Q DD ++ Sbjct: 66 SDSPT---QHVGGGPTGELTKVTHEIPMLSMGDVFSIDELMDFNQR----QQDNDDVNVT 118 Query: 128 --FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + LE KIDG +++ YE G+ V + RG+G+ GEDV+A + I ++P L P + Sbjct: 119 PEYNLELKIDGLSLSLVYENGRLVQGSTRGNGNIGEDVTANVMTIKSVPH--QLPEPLSL 176 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLG 244 E RGE Y+ K F+ LN E A G +ANPRNAA+G LR+L+P R L F++ + Sbjct: 177 EFRGECYMPKESFVKLNQEREAAGLPIFANPRNAAAGSLRQLDPQVTARRDLATFMYYVP 236 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + ++ + Q L +MR LGF VN R + I Y E + R L Y IDG+V Sbjct: 237 EYQKLGVRTQAAALNRMRELGFSVNPHNRVVRSRQEITDYIEEYTAQRDQLSYGIDGIVE 296 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ + LG + PRW I++KF ++ +T + +I +GRTG +TP A ++P+ + Sbjct: 297 KVNDLDTENALGNTVKVPRWEIAYKFPPEEQATVVREIVWTVGRTGNVTPTAVMDPIQLA 356 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ A+LHN DY++ +DIR+GD V + +AG++IP++ + + +R D Sbjct: 357 GTTVSRASLHNPDYLR-----------EKDIRLGDTVYLHKAGDIIPEISRVDLKKRPAD 405 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +QP+ P+ CP+C S DL G++ A RC + C AQ E L HF SR+A NI+ Sbjct: 406 SQPYQVPTTCPVCGS----DLVHLDGEV--ALRCVNPM-CPAQIKEGLAHFASRNAMNID 458 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG + + + + + AD+++L Q + K FGD S TNL SI Sbjct: 459 GLGPKIIQQLWDKQ----LVHDVADLYSLTHDQLLTLDK------FGDKSATNLLTSIAN 508 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RN S+ER +F LGIRHVGA+ AR + +++ + + +A + + Sbjct: 509 SRNNSVERLLFGLGIRHVGAKAARLIMEHFQTLERLMAANAEEVAAVDG----------I 558 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKI 661 G I +++ ++ N + + V+ L+ + H + +SE +++V TG L+++ Sbjct: 559 GPTIGESVQTYFANEQVVTLVDE-LRAAGVNFDYHGASAPVAASEWNGRRVVLTGKLEEL 617 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R A+ ++ GA V+ +S+KTDI+I G GSKL KAQ LG+ + +E +F Sbjct: 618 TRTDAKNWLEAHGAKVTGSVSKKTDIVIAGTAAGSKLTKAQDLGITVWDEARF 670 >gi|7674019|sp|Q9ZHI0|DNLJ_THEFI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+]; AltName: Full=Tfi DNA ligase Length = 670 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 253/718 (35%), Positives = 398/718 (55%), Gaps = 64/718 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+AR+ ++ L I YH+ YY + P I D+EYD L R + FP+ + P Sbjct: 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEF---KSP 57 Query: 72 NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G F+ V H SL+ + E++ F R+ R +K +T+ Sbjct: 58 DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALGRK--RPFLYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G V+ A RGDG GE+V+ + IPTIPR L +P+ +EVRGE Sbjct: 116 EHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLK-GVPDRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247 VY+ FL LN+E+ G K + NPRNAA+G LR+ +P + F+ GLG Sbjct: 175 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLG-LE 233 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E K QYE+L ++ GFPV +G +A G+ Y + R LP++ DG+V K+D Sbjct: 234 ESGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPFEADGVVVKLD 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +L ++LG AR+PR+ +++KF ++ TRLLD+ Q+GRTG +TPV LEPV I G+ Sbjct: 294 DLALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSE 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ R + +P Sbjct: 354 VSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERP 402 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +P CP C R+V K GK+ HRC L C A++ E ++H+ SR A +IEGLG Sbjct: 403 IRWPETCPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIEGLG 453 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINK 544 ++ ++ + +R AD++ L++ E++LG G+ S NL I + Sbjct: 454 EKLIERLLEK----GLVRDVADLYHLRK---------EDLLGLERMGEKSAQNLLRQIEE 500 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 ++ LER +++LG+ VG +AR+LA+ + + + + + V Sbjct: 501 SKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELLEVEE----------V 550 Query: 605 GDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 G++ A+AI+E ++P R++ LKE S+ E+ VS + V TG L + Sbjct: 551 GELTARAILETLKDPAFRDLV---RRLKEAGVSMESKEE-VSDLLSGLTFVLTGELSR-P 605 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + + + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV ++ EE+F L++ Sbjct: 606 REEVKALLQRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKE 663 >gi|294791934|ref|ZP_06757082.1| DNA ligase, NAD-dependent [Veillonella sp. 6_1_27] gi|294457164|gb|EFG25526.1| DNA ligase, NAD-dependent [Veillonella sp. 6_1_27] Length = 667 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 373/704 (52%), Gaps = 46/704 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L+QE+++ YY P + D EYD R + A P+ P+ P + Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ S KV H P LSL +++ +++R F +R+ + K + +E KIDG Sbjct: 61 VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFASRVEKELGHKPSA---YVVELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L + PE IEVRGE Y+ ++ Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYLE-DAPEFIEVRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P +R L FF + +G Q E Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEVGANIHSQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +LQ + F VN R T ++ N R LPYD DG+V KV+ F Q+ LG Sbjct: 237 LLQSLETFKFSVNPHYRVCKTIDEVIDAINYWGEKRHELPYDTDGMVIKVNSFEDQEVLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T L DI I +GRTG+LTP LE V + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD V++ +A E+IP+V+ ++ +R PF+ P+ CP+ Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR + G+ AA RCT C A + E++ HF SRDA NI+GLG ++ Sbjct: 406 CESPTVR----REGE--AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ I D++ L Q + ++ G S NL +I + L+R ++ Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAIADSKTRGLDRVLYG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A S + F L+ V +G +A +IVE+ Sbjct: 509 LGIRLIGSKAAGTIANVVKSMERFLTITKE----------ELVAVEEIGPTMADSIVEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q+P ++ +E L + +++E + +V TG L+ + R +A + + GA Sbjct: 559 QDPAHVEIIEGLTAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL++ Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLRE 662 >gi|312870519|ref|ZP_07730638.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3] gi|311093981|gb|EFQ52306.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3] Length = 679 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 243/714 (34%), Positives = 385/714 (53%), Gaps = 55/714 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ L++ A++E++ L +++ YY+ P + D YD +R + FP+L Sbjct: 6 PVDQLTLAAAKQEIAPLREQLIKWGQEYYEQDNPSVEDYVYDRAYQRLVELEQRFPELKT 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 S+ P +GG L KVTH IP LS+ +++I++L F R Q D S+ Sbjct: 66 SDSPT---QHVGGGPTSELTKVTHEIPMLSMGDVFSIDELMDFNQR----QQDNGDVSVT 118 Query: 128 --FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + LE KIDG +++ YE G+ V + RG+G+ GEDV+A + I +IP L P + Sbjct: 119 PEYNLELKIDGLSLSLVYENGRLVQGSTRGNGNIGEDVTANVMTIKSIPH--QLPEPLSL 176 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLG 244 E RGE Y+ K F+ LN E A G +ANPRNAA+G LR+L+P R L F++ + Sbjct: 177 EFRGECYMPKESFVKLNQEREAAGLSVFANPRNAAAGSLRQLDPQVTARRDLATFMYYVP 236 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + ++ + Q L +MR LGF VN R + I Y E + R L Y IDG+V Sbjct: 237 EYQKLGVRTQAAALDRMRELGFSVNPHNRVVHNRQEITDYVEEYTAQRDQLSYGIDGIVE 296 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ + LG + PRW I++KF ++ +T + DI +GRTG +TP A ++PV + Sbjct: 297 KVNDLDTENALGNTVKVPRWEIAYKFPPEEQATVVRDIVWTVGRTGNVTPTAVMDPVQLA 356 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ A+LHN DY+ +DIR+GD V + +AG++IP++ + + +R D Sbjct: 357 GTTVSRASLHNPDYLS-----------EKDIRLGDTVYLHKAGDIIPEISRVDLKKRPAD 405 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +QP+ P+ CP+C S +V L+ + A RC + C AQ E L HF SR+A NI+ Sbjct: 406 SQPYQVPTTCPVCGSDLVH-LDDEV-----ALRCVNPM-CPAQIKEGLAHFASRNAMNID 458 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG + + + E + AD+++L Q + K FGD S NL SI Sbjct: 459 GLGPKIIQQLWDKE----LVHDVADLYSLTHDQLLTLDK------FGDKSAANLLTSIAN 508 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RN S+ER +F LGIRHVGA+ AR + +++ Q ++ ++ + D+ + V + Sbjct: 509 SRNNSVERLLFGLGIRHVGAKAARLIMEHF-------QSLDRLLTASADE---VAAVDGI 558 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV----SSEIENKKLVFTGTLQK 660 G I ++ ++ N + V+ L+ V + H V SE +++V TG L++ Sbjct: 559 GPTIGDSVQTYFANEQVKKLVDE-LRAVGVNFDYHGSVVPAATDSEWNGRRVVLTGKLEE 617 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + R A+ ++ GA V+ +S+KTDI+I G GSKL KAQ LG+ + +E +F Sbjct: 618 LTRADAKHWLEAHGAKVTGSVSKKTDIVIAGTAAGSKLTKAQDLGITVWDEARF 671 >gi|325267489|ref|ZP_08134142.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394] gi|324981014|gb|EGC16673.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394] Length = 804 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 268/800 (33%), Positives = 403/800 (50%), Gaps = 133/800 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A ++ + + +L Q ++ + YY P + D+EYD L R + + +P Sbjct: 22 ACTMSTPQHRIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELETLEAEYPQF---RL 78 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIED-------LRKFITRIYRFWQKKDD 123 P P ++GG + V H++P LSL ++ D +F+ R ++ Sbjct: 79 PESPTQRVGGAVLDGFETVVHAVPMLSLNNAFSPRDDETGAFGHAEFLAFDERVCKELGV 138 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIP 182 + + EPK DG +++ Y+ G V AA RGDG +GE+V+ I+ + IP ++ P Sbjct: 139 AQVEYAAEPKFDGLAVSLLYQNGILVQAATRGDGTTGENVTENIKTVRNIPLKLHGEKQP 198 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFV 240 ++EVRGEV + K DF ALN + G+KP+ANPRNAA+G LR+L+ + IT R L+FF Sbjct: 199 ALLEVRGEVLMLKADFAALNQRQLEAGQKPFANPRNAAAGSLRQLD-SKITAQRKLHFFA 257 Query: 241 HGLGKTS--EIFAKGQYEMLQKMRCLGFPVNNGVRQANT-FHGIVSYYNEMKSIRSTLPY 297 +G+ + S E + E L + LGF + G +T ++ Y + R LPY Sbjct: 258 YGIAQLSGVERLPESHMEELALLHELGFSLPEGYFGTHTGAAAVLREYERLAEHRPRLPY 317 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG+V KV+ + Q+QLG +R+PRW I+HKF ++A T + ID+Q+GRTG +TPVAR Sbjct: 318 EIDGMVVKVNSLAEQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGAITPVAR 377 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L PV +GG +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV ++ Sbjct: 378 LAPVFVGGVTVTNATLHNQD---------EVAR--KDVRVGDTVVVRRAGDVIPEVVRVL 426 Query: 418 VNERHP-------------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLAC 464 + ER P +PF P CP+C S V R+ G+ VA RCTGG+ C Sbjct: 427 L-ERRPMQPVDLLGEQMEAKYEPFRLPETCPVCGSAVERE----AGEAVA--RCTGGMLC 479 Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524 AQ+ + L HF SR A +I GLG +Q++ ++ + ADI+ L Q + I Sbjct: 480 QAQRAQGLIHFASRKAMDIAGLGDKQIEALVAAD----VLHSFADIYRLDIAQLQT---I 532 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-- 582 ++ N+ DSI + R L RF+F+LGIRHVG A+ LA + + + Sbjct: 533 KDSKSAATKWAQNILDSIAQSRTPPLARFLFALGIRHVGESTAKQLAAAFGNLDTVRRAP 592 Query: 583 --------EINNIIAHN-------------NDDWLS----------------------LI 599 +I +I+AH DD L L Sbjct: 593 EPILACLPDIGSIVAHAIAHYFKQPAQQKMLDDLLQHVAPQAAAPSPQTRAHAAPEQWLQ 652 Query: 600 RVP--------------LVGDIIA----QAIVEFYQNPRNICAVEALLKEVSP------- 634 R+P L G + A QA+ + +Q+ R A ALL+E++ Sbjct: 653 RLPNIKLSEKRAAELWQLAGSLHALQTDQALPQEWQDWRKQPAHAALLQEITAFTEALPE 712 Query: 635 ------SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 S H ++ S I K V TGTL ++R +A + G VS +S+KTD + Sbjct: 713 SSTDGVSGSLHPEH--SPIAGKTFVLTGTLPTLKRDQAAALIEAAGGKVSGSVSKKTDFV 770 Query: 689 IVGDNPGSKLEKAQQLGVKI 708 + G+ GSKLEKAQ LGV + Sbjct: 771 VAGEAAGSKLEKAQALGVAV 790 >gi|317051097|ref|YP_004112213.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5] gi|316946181|gb|ADU65657.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5] Length = 660 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 248/705 (35%), Positives = 376/705 (53%), Gaps = 59/705 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ + L + D+ YY + PI+ D EYD L R A+ FP ++ P + Sbjct: 6 RERIDQLTALLQKADEAYYTLADPIMGDGEYDGLYRELRALEARFPQYVHADSPT---RR 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 IG + HS+P LSL + +L F+ ++ R + + FT+EPKIDG Sbjct: 63 IGERLEGGSRAFVHSVPMLSLGNTYEQAELEDFLRKVRR----DSGDHVRFTVEPKIDGV 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVYISK 195 +++ Y G F AA RGDG GE++S IR I ++P L IP +E+RGEVYI + Sbjct: 119 AVSLHYRDGVFSVAATRGDGLQGEEISHNIRTIRSLP----LEIPAAGAMEIRGEVYIPR 174 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 F +N + + G YANPRN A+G L+ L+P +R L F + L Sbjct: 175 QAFERINQQRLEQGESLYANPRNLAAGSLKLLDPAQSSRRGLQIFCYSLQGFPH---DSH 231 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ LQ +R GFPV++ VRQ + + ++ R LP+DIDG V KVD+ L ++ Sbjct: 232 FQCLQTLRDWGFPVSDLVRQCASDAEVWDAVQHIRQQRELLPFDIDGAVIKVDQLHLHEE 291 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+ PR+ I++K+ +Q STRL DI Q+GRTG++TPVA L+PV + G+ I+ ATLH Sbjct: 292 LGTTAKIPRYAIAYKYEAQQVSTRLRDITFQVGRTGVITPVAELDPVLLAGSTISRATLH 351 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N + ++ +DIR+GD+VL+++ G+VIPKVV I+ R DA P C Sbjct: 352 NFEELR-----------RKDIRIGDQVLIEKGGDVIPKVVKPIMALRSADASEVVPPENC 400 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S + N H C AQ+L L HFVSRDA +I G+G++ + F Sbjct: 401 PECGSPLHWSDN-------GVHLYCQNPLCPAQRLGALLHFVSRDAMDIAGMGEKVVQRF 453 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 D IP DI+ L ++ ++ GFG S NL S+ + LER + Sbjct: 454 L---DEGILTDIP-DIYHL------VYERVASLDGFGVKSALNLQASVEASKAHPLERVL 503 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 F+LGIRHVG + A+ LA+++ S + Q I + A V VG+I+A++I Sbjct: 504 FALGIRHVGKKTAQLLARHFGSMERLMQASIEELTA-----------VEEVGEIVARSIY 552 Query: 614 EFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F + P ++ VEAL + ++ V+S + + +VFTG L + R + +E Sbjct: 553 SFLREPASVALVEALKRSGLNMESSAPRAQVASGLSGRSVVFTGKLSR-PRKEYEEMAQL 611 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 GA V + +S D ++ G++ GSKL+KA++LGV I++EE+F+ L Sbjct: 612 GGARVLSGVSGSLDYLVCGEDAGSKLDKARKLGVAIIDEEEFVRL 656 >gi|160902460|ref|YP_001568041.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95] gi|190359269|sp|A9BJX5|DNLJ_PETMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160360104|gb|ABX31718.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95] Length = 668 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 237/703 (33%), Positives = 389/703 (55%), Gaps = 53/703 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ L+ EI H+ YY + PII D EYD L + + +P+L + P+ P + Sbjct: 8 KERYEKLKAEIEEHNYRYYVLADPIISDQEYDKLFKELVELEKKYPEL---KTPDSPTQR 64 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 IGG + KV H IP LSL+ +N E++ F R+ + N + + E KIDG Sbjct: 65 IGGIVVEGFNKVNHLIPMLSLDNTYNEEEILDFHKRVLKNLSL---NHVEYFCELKIDGV 121 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + +RY G A RGDG +GED++ ++ IP+IP L N+ IEVRGE+Y+ K + Sbjct: 122 SVALRYTDGVLTQAITRGDGTTGEDITQNVKTIPSIPLRLRENL--TIEVRGEIYMPKKE 179 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F+ +N E G +ANPRNA +G L+ L+ T++ R L+ F++ + + Q E Sbjct: 180 FVRINSEREEKGLPVFANPRNATAGTLKLLDSTEVAKRKLSSFMYYVIFPQNYNLETQEE 239 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + ++ +GF +N + A ++ ++ E R L Y++DG+V KV+ F LQ+ LG Sbjct: 240 AINFLKEVGFRINPNYKNAQDIGQVIEFWKEWNRRRKELEYEVDGIVVKVNSFELQRLLG 299 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 E ARSPRW I+ KF +Q T+L I +Q+G TGI+TPVA +P+ + G ++ A+LHN Sbjct: 300 ETARSPRWAIAFKFEAEQKETKLKAIKLQVGSTGIITPVAEFDPIQLEGTIVKRASLHNF 359 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DY+K RDIR GD VL+++AG +IP+V+ + +R + + P CP+ Sbjct: 360 DYLK-----------ERDIREGDYVLIEKAGGIIPQVIGPVKEKRTGEEKIIRPPEKCPV 408 Query: 437 CQSRVVRDLNPKTGKLVAAH---RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 C +V GK+ ++ RC +C + L L++FVSR+A NI+GLG + L Sbjct: 409 CGGKV--------GKIKSSEVAIRCLNP-SCPEKLLRTLENFVSRNAMNIQGLGPKIL-- 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 K A ++ AD++ L ++ S + G GD +V N+ I + +N L+R Sbjct: 458 --KRMVDAGLLKDIADLYYLNEQKIRSLGE-----GIGDKTVENILTQIEQSKNRELDRL 510 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I +LGI +VG++ A+ LA ++ + ++++I D+ L+ + +G+ IA AI+ Sbjct: 511 INALGIPNVGSKTAKDLANHF-------KNLDSLIDAKFDE---LVEIEGIGEDIANAII 560 Query: 614 EFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 +F+ + + LK+ ++G + E+ + ++ + TG L K+ R + EYV Sbjct: 561 KFFSQ-EEVKKIVKKLKDAGVNMGKKEEEKLEGPLKGLVICQTGALSKMTRQEFAEYVES 619 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G S +++KT+I++VG+NPGSKL+KAQ G+ IM+EE+F Sbjct: 620 KGGTFSENVTKKTNILVVGENPGSKLDKAQSYGITIMSEEEFF 662 >gi|282850287|ref|ZP_06259666.1| DNA ligase (NAD(+)) [Veillonella parvula ATCC 17745] gi|282579780|gb|EFB85184.1| DNA ligase (NAD(+)) [Veillonella parvula ATCC 17745] Length = 667 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 379/704 (53%), Gaps = 46/704 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L+QE+++ YY P + D EYD R + A P+ P+ P + Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ S KV H P LSL ++N +++R F R+ + K + + +E KIDG Sbjct: 61 VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFGNRVEKELGHKPSS---YVVELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L N PE IEVRGE Y+ ++ Sbjct: 118 AVNLHYENGMFVRAVTRGDGRIGEDVTANVRTIKSIPLFLD-NAPEFIEVRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P R L FF + +G Q E Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITANRNLAFFAYAIGSEVGANIHSQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ + F VN R T ++ + R LPYD DG+V KV+ F Q+ LG Sbjct: 237 LLKSLENFKFSVNPHYRVCKTIDEVIEAIDYWGDKRHELPYDTDGMVIKVNSFDDQEVLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T L DI I +GRTG+LTP LE V + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD V++ +A E+IP+V+ ++ +R+ PF+ P+ CP+ Sbjct: 357 DFID-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRNGSEIPFTIPNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR + G+ AA RCT C A + E++ HF SRDA NI+GLG ++ Sbjct: 406 CESPAVR----REGE--AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ I D++ L Q + ++ G S NL +I+ ++ L+R ++ Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAIDDSKSRGLDRVLYG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A N Q I+ + D+ L+ V +G +A +IVE+ Sbjct: 509 LGIRLIGSKAATTIA-------NVVQSIDRFMTITKDE---LVAVEEIGPTMADSIVEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q+P + +E L + + +++E + +V TG L+ + R +A + + GA Sbjct: 559 QDPAHKEIIEGLTQAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +S+KT +++ G++ GSKL KA +LG++++NEE+F+ LL++ Sbjct: 619 VTGSVSKKTTLVVAGEDSGSKLTKANELGIRVINEEEFVELLKE 662 >gi|283458551|ref|YP_003363181.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18] gi|283134596|dbj|BAI65361.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18] Length = 747 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 251/735 (34%), Positives = 381/735 (51%), Gaps = 61/735 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E R E + L +I YY P + D+EYDAL RR + I P L ++ P Sbjct: 33 EALRAEYAELTDKIRAARRAYYNEDAPFLSDAEYDALYRRLEIIEAEHPHLIANDSPT-- 90 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE + VTH SLE +++ E+LR ++T+ + ++ + E KI Sbjct: 91 -QEVGGEAIEAFAPVTHLQRMYSLEDVFSFEELRAWLTKTEESARNLTGSAPQWLTELKI 149 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYI 193 DG + + Y G V AA RGDG +GEDV+ +R I +IP+ L+ N PE IE+RGEV+I Sbjct: 150 DGLAVNLLYRNGTLVRAATRGDGTTGEDVTHNVRTIASIPQQLTGENHPEEIEIRGEVFI 209 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 S DF LN+ MIA G+ P+ANPRNAA+G LR+ + +R L+ +VHG+G + + Sbjct: 210 SSADFEKLNESMIAAGKNPFANPRNAAAGSLRQKDAAVTASRPLSMYVHGIGSRTGLDIA 269 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 QYE + G PV+ A+ + + N+ R +L ++IDG+V KV++F+ Q Sbjct: 270 TQYETYDLLASWGLPVSPYSEIADNTEAVFDFINKYGEQRHSLVHEIDGIVIKVNDFATQ 329 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 QLG +R PRW +++K+ ++ T+LLDI + +GRTG +TP +EPV + G+ + AT Sbjct: 330 AQLGYTSRVPRWAVAYKYPPEEVHTKLLDIRVDVGRTGRVTPYGVMEPVFVSGSTVERAT 389 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+D +K + + +GD V++++AG+VIP++V +V R + F PS Sbjct: 390 LHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVAPVVALRDGTEREFVMPS 438 Query: 433 FCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C S L P K G + RCT +C AQ ER+ + SR AF+IE LG + Sbjct: 439 ECPSCGS----PLAPGKEGDV--DLRCTNPRSCPAQLTERVYYAASRGAFDIEALGFEAA 492 Query: 492 DFFFKSEDP----------AFSIRIPADI--FTLQRRQQ---TSTTKIENILGF------ 530 P FS+ I D+ T++R ++ T K+E + F Sbjct: 493 KALTSPATPDTPPLTTEAHLFSLNI-EDLREVTIEREKKVKGVGTGKMERVPYFYTKPTK 551 Query: 531 ------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + NL+ + K + L R + +L IRHVG AR+LA + S Q Sbjct: 552 ARPEPKPTKNTLNLFAELEKAKQQPLWRVLVALSIRHVGPTAARALAAEFGSMQ------ 605 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 A D L V VG IA +I+E++ + V++ +++V Sbjct: 606 ----AIREADRERLAAVDGVGTTIADSIIEWFAEDWHAEVVDSWAAAGVRMEDSRDESVE 661 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TGTL R A+E + G S +S+KT ++ G N GSKL+KAQQL Sbjct: 662 RTLEGLTVVVTGTLNGYTRDGAKEAIISRGGKASGSVSKKTHFVVAGANAGSKLDKAQQL 721 Query: 705 GVKIMNEEQFLFLLQ 719 G+KI++EE F LL+ Sbjct: 722 GLKILDEEGFTALLE 736 >gi|285018504|ref|YP_003376215.1| NAD-dependent_DNA_ligase [Xanthomonas albilineans GPE PC73] gi|283473722|emb|CBA16225.1| putative nad-dependent_dna_ligase protein [Xanthomonas albilineans] Length = 838 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 231/657 (35%), Positives = 353/657 (53%), Gaps = 94/657 (14%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY + P I D+EYDAL R +A+ A P LAR + P +G + +V H+IP Sbjct: 25 YYVLADPAIPDAEYDALMRELEALESAHPALAREDSPT---RSVGARPDSGFPEVRHAIP 81 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDN----------SIFFTLEPKIDGTMITIRYE 144 LSL + + + RF + D + F++EPK+DG I++RYE Sbjct: 82 MLSLANAFETPSVAEDADDRIRFAEVADFERRIERELELAAPVFSVEPKLDGLAISLRYE 141 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLAL 201 G FV A RGDG +GEDV+A +R + ++P R L + +P ++EVRGE+Y+ + F A Sbjct: 142 DGVFVQGATRGDGSTGEDVTANLRQVRSVPLRLRELGMPMPAVLEVRGEIYMPRAAFAAW 201 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEI-FAKGQYEML 258 N + K ANPRN A+G LR+L+P +TR L FF + +G+ + + + L Sbjct: 202 NARALERNEKLLANPRNGAAGSLRQLDPA-VTRRRPLAFFAYSVGEVRGLELPETHSQTL 260 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 Q +R GFPV A F G+++Y+ + + R LPYDIDG+VYK+D++ Q +G Sbjct: 261 QLLRRYGFPVAPEADTATGFDGLIAYFRRIGARRDALPYDIDGVVYKLDDYDQQTAMGFV 320 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 AR+PRW ++HKF ++ ST L I++QIGRTG TPVARLEPV + G ++TNATLHN D Sbjct: 321 ARAPRWALAHKFPAQEQSTVLRAIEVQIGRTGAATPVARLEPVQVAGVIVTNATLHNADQ 380 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I L D+RVGD V+V+RAG+VIP+VV +I R P P++ P+ CP+C Sbjct: 381 IARL-----------DVRVGDTVIVRRAGDVIPEVVRVIEARRPPGTLPWTMPAVCPVCG 429 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF----- 493 S +V++ + T RC+GGLAC+AQ+ E ++HF SR A +IEGLG++Q D Sbjct: 430 SELVKEDDAVT------WRCSGGLACAAQRKEAVRHFASRRALDIEGLGERQADALVEFG 483 Query: 494 FFKSEDPAFSIRIPADIFTL-------------QRRQQTSTTKIENILGFGDVS------ 534 F +S +++R+ D+ + Q +++ + + G+ ++ Sbjct: 484 FVQSLADLYALRV-EDLVRMKAALDAASSADLLQAVEESKGALVLDAAGYAALAQQVPGW 542 Query: 535 ----------------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 NL I+ R +L RF+F+LGI H+G A++LA Sbjct: 543 RHADFLRRHLAVDLGGKLATKWAENLLAGIDASRATTLSRFLFALGIPHLGETTAKALA- 601 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 ++L F + ++ L +P +G +A+AI F++ P N V+AL+ Sbjct: 602 HWLGSLAFVRSTPAVL---------LQALPDIGGEVARAIATFFEQPGNAAVVDALI 649 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 18/198 (9%) Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 +GF D S R + L + +L + +G + A+ LA Y + ++ + Sbjct: 653 IGFADESCP----PAALRERLDLAHLLSTLPVDKLGGKSAQRLAATYGT-------LDAL 701 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP---RNICAVEALLKEVSPSIGRHEKNVS 644 + N W A +V + +P + + EA ++ + + + Sbjct: 702 LRANESGWTGAGLS----AAGAANLVAYLADPAQRQGLLDAEAAMQRLLDAAPQQPTRHG 757 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 ++ + V TG+L ++ R A+ + LGA V+ +S+KT ++ G GSKL+KAQ+L Sbjct: 758 GPLDGQTAVLTGSLTQLTRDAAKARLEALGAKVAGSVSKKTSFVVAGSEAGSKLDKAQEL 817 Query: 705 GVKIMNEEQFLFLLQQYN 722 GV + +E Q L L ++ Sbjct: 818 GVVVWDERQLLTFLAEHE 835 >gi|228472685|ref|ZP_04057445.1| DNA ligase, NAD-dependent [Capnocytophaga gingivalis ATCC 33624] gi|228276098|gb|EEK14854.1| DNA ligase, NAD-dependent [Capnocytophaga gingivalis ATCC 33624] Length = 666 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 229/714 (32%), Positives = 379/714 (53%), Gaps = 66/714 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ +L +E++ H+ YY P I D E+D + + +P + +DPN P ++ Sbjct: 6 QQIEALRKELNEHNYNYYVLDTPSISDYEFDQKLKALQDLEAQYP---QYKDPNSPTVRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE+ + VTH SL+ ++ E++ ++ R+ + + + F E K DG Sbjct: 63 GGEITKNFPTVTHEFRMYSLDNSYSKEEVEEWEKRVLKGL---GTDKVSFVCELKYDGAS 119 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I + Y+ G+ V A RGDG G++++A +R I ++P L + P+ +RGE+ I K F Sbjct: 120 IDLTYDHGQLVQATTRGDGVQGDEITANVRTIRSVPLTLKGDYPDHFHIRGEIIILKEGF 179 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254 +N++ IA G PY NPRN ASG L+ + ++ + L ++V G + Q Sbjct: 180 KKMNEQRIAEGEDPYMNPRNTASGSLKLQDTAEVAKRPLDCLLYYVVG----DNLPVDNQ 235 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ LQK R GF V + + ++ ++ + N + R LPY+ DG+V KV+++ Q++ Sbjct: 236 FDSLQKARDWGFKVPSQSKLCHSTDEVMEFINYWDTRRHDLPYETDGVVIKVNDYQAQQE 295 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++SPRW I++KF ++ +T L I Q+GRTG +TPVA L PV + G ++ A+LH Sbjct: 296 LGYTSKSPRWAIAYKFKAEEVTTSLESISYQVGRTGAITPVANLSPVLLAGTIVKRASLH 355 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I L + +GD+V V++ GE+IPK+ + + RH A P +F + C Sbjct: 356 NADQIAKL-----------GLHIGDQVFVEKGGEIIPKITGVRLEARHEQATPVTFITHC 404 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S +VR+ A H C C Q R++HF+SR A NIEGLG + ++ Sbjct: 405 PECGSELVRNEGE------AQHYCPNAYGCPPQITGRIQHFISRKAMNIEGLGSETVELM 458 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ A I AD++ L+ Q I+N+ G S N+ I K + + ER + Sbjct: 459 FR----AGLIHNYADLYELKAEQ------IQNLERMGTRSAQNIITGIEKSKEVPFERVL 508 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG +A+ A+ Y + F + LI+V +GD IAQ+++E Sbjct: 509 FALGIRMVGESVAKKFARIYKTLDAF----------RTAPYEQLIQVDEIGDRIAQSVIE 558 Query: 615 FYQNPRNICAVEAL--------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 F+ + RN +E L LKE + + ++S ++ K LV +G + R + Sbjct: 559 FFADDRNKEILERLQGYGLQFALKETA------QTSLSEALKGKTLVVSGVFARHSRDEI 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G V + +S KT+ ++ G+N G SKLEKA QLG+ I++EE+F ++Q Sbjct: 613 KALIESHGGKVGSSISSKTNYVVAGENMGPSKLEKATQLGIPILSEEEFEKMIQ 666 >gi|157363572|ref|YP_001470339.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO] gi|190359296|sp|A8F541|DNLJ_THELT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157314176|gb|ABV33275.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO] Length = 678 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 241/706 (34%), Positives = 386/706 (54%), Gaps = 53/706 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E +K + L +EI YH+ YY + PII D EYD L + + +P+L P+ P Sbjct: 5 EDIKKRIEKLREEIEYHNYRYYVLADPIISDEEYDRLMQELIELEKKYPELV---TPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ V HS P LSL+ ++ +R+F R+ + +K ++I + E KI Sbjct: 62 SQRVGEKVLDEFRSVEHSEPMLSLDNTYDEAQIREFDKRVRKLLEK---DTIEYVTELKI 118 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + +RYE G+FV RGDG G+D++ ++ + +IP L L P +EVRGE+Y+ Sbjct: 119 DGVSVALRYENGRFVLGLSRGDGTRGDDITENLKKVRSIP--LILREPVTVEVRGEIYMP 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253 +F LN+E V +ANPRNA +G LR+L+ + I R L+ F++ + + Sbjct: 177 TEEFERLNEERKKVDGPLFANPRNATAGTLRQLDTSVIRNRRLDSFIYYVLSPERYGLQT 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q++ L+ ++ +GF VN + ++ Y+ + +S L Y +DG+V KV+ F+ Q Sbjct: 237 QWDALKWLKKIGFKVNPYSQLCQNIDQVIDYWKQWIEKKSELSYWVDGVVVKVNHFNFQS 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG +RSPRW I+ KF ++A TR+L+I +Q+GRTGILTPVA LEP+ + G ++ +L Sbjct: 297 ILGSTSRSPRWAIAFKFPAQRAKTRVLNIIVQVGRTGILTPVAELEPIQLAGTVVKRVSL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN DYI+ +DIR+GD+V V+++G +IP+VV +I +ER+ + PS Sbjct: 357 HNFDYIE-----------EKDIRIGDQVYVEKSGGIIPQVVSVIADERNGSEKKIEIPSK 405 Query: 434 CPICQSRVVRDLNPKTGKLVA---AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 CP+C +V GK+ + A RC C A+ L+ FVSR A NI+GLG++ Sbjct: 406 CPVCSGKV--------GKIDSEDVALRCLNP-HCPAKLKRALETFVSRGALNIKGLGEKL 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D S ++ ADIF L + + G G + NL I + + L Sbjct: 457 IDRLVDSG----LVKDIADIFYLTPFELSQLGS-----GIGQKMIANLLAQIEQAKKTPL 507 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + + LGI VG + AR L + + S I +++ + D+ L ++ +G IA+ Sbjct: 508 HKILTGLGIPLVGEKTARILTQKFRS-------IKRLLSSSVDE---LTQIEGIGIEIAK 557 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEY 669 I E++ N + + L++ ++ E V S+I N TGTL+ R + ++ Sbjct: 558 NIREYFDNEKTRQII-GKLEKAGLNLEEKEAVVQSKILSNLTFAVTGTLKNFTRDQIKQL 616 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 V LG V+ +S+ TD +IVGDNPGSKL KA+ LGVK++ E++FL Sbjct: 617 VQSLGGQVTDSVSKSTDYVIVGDNPGSKLTKARNLGVKLLTEDEFL 662 >gi|29840375|ref|NP_829481.1| NAD-dependent DNA ligase LigA [Chlamydophila caviae GPIC] gi|75539575|sp|Q822R2|DNLJ_CHLCV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29834724|gb|AAP05359.1| DNA ligase [Chlamydophila caviae GPIC] Length = 662 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 239/703 (33%), Positives = 381/703 (54%), Gaps = 50/703 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +R++ SL +E+ D CYY +I D +YD ++ AI P+ P+ Sbjct: 6 SREQYLSLCKELEKDDYCYYVLHNAVISDYDYDMKMQKLLAIEAQHPEWKVLWSPS---M 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++ + V HS P LS+ + +E+L F +R+ +K + +TLE KIDG Sbjct: 63 RLGDRVSGNFPVVAHSHPMLSIANAYTLEELNDFFSRV----EKTLGYAPIYTLELKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + IRYE+G V A RG+G GED++A IR I ++P L + PE +EVRGEV+ + Sbjct: 119 IAVAIRYEQGILVQALSRGNGQKGEDITANIRTIRSLPLRLPKDAPEFLEVRGEVFFKRE 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F +N + +ANPRNAA G L+ L+ + R L V+G S+ + Y Sbjct: 179 TFEQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQRNLELSVYG--SLSDENTESHY 236 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + L + GFP+ RQ T +V +E++ +R LP +IDG+V KVD+ QK L Sbjct: 237 DNLMLCKRWGFPIFGQPRQCQTIAEVVKSLDEIEGLRDQLPMEIDGVVIKVDDVEAQKAL 296 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+ RW +++K+A ++A T L +I IQ+GRTG+LTPVA+L PV + G+ ++ A+L+N Sbjct: 297 GMTAKHYRWALAYKYAPERAETILENILIQVGRTGVLTPVAKLSPVFLSGSRVSRASLYN 356 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 E+ I+ +DIR+GD V V++ GE+IPKVV + + +R QP+ P FCP Sbjct: 357 EEEIE-----------RKDIRIGDTVYVEKGGEIIPKVVGVCLEKRPEGTQPWVMPEFCP 405 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C +V R+ + + RCT L CSA +E+++ FV R A +I+ LG++ + F Sbjct: 406 VCHGKVTRESDK------VSVRCTNPL-CSAGAIEKIRFFVGRGALDIDHLGEKVITKLF 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 I DIF + + + + GF D SV N+ SI K + L+RFI Sbjct: 459 D----LGVIHRCCDIFKI------TEEDLLQVPGFKDKSVKNVLKSIEKAKQAPLDRFIA 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGI +VG +A +LA+++L N+ A L + +GD +A++I + Sbjct: 509 ALGIPYVGVRVASALAQHFL----------NLEAVMGASLEELKSIEGIGDKVAESIEAY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + I ++ +L + H + SS K V TGTL+K+ R +A+ + G Sbjct: 559 FNQQDTIEEIQKMLSLGVNVLPYHRE--SSSCLGKTFVITGTLKKMTRSEAEASIRNCGG 616 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V + +S+ TD ++VG++PGSK +KAQ+L + I+NE L +L Sbjct: 617 KVGSSVSKSTDYLVVGEDPGSKFKKAQELEIPILNENDLLKIL 659 >gi|238019226|ref|ZP_04599652.1| hypothetical protein VEIDISOL_01090 [Veillonella dispar ATCC 17748] gi|237863925|gb|EEP65215.1| hypothetical protein VEIDISOL_01090 [Veillonella dispar ATCC 17748] Length = 667 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 232/703 (33%), Positives = 371/703 (52%), Gaps = 46/703 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L+QE+++ YY P + D EYD R + A P+ P+ P + Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIV---PSSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ S KV H P LSL +++ +++R F R+ + K + +E KIDG Sbjct: 61 VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFANRVEKELGHKPSA---YVVELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L N PE IEVRGE Y+ ++ Sbjct: 118 AVNLHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYLE-NAPEFIEVRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P +R L FF + +G Q E Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEEGASIHSQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ + F VN R T ++ N R LPYD DG+V KV+ F Q+ LG Sbjct: 237 LLKSLESFKFSVNPHYRVCQTIDEVIETINYWDEKRHDLPYDTDGMVIKVNSFDDQEALG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T L DI I +GRTG+LTP LE V + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD V++ +A E+IP+V+ ++ +R PF+ P+ CP+ Sbjct: 357 DFIN-----------EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR + G+ AA RCT C A + E++ HF SRDA NI+GLG ++ Sbjct: 406 CESPAVR----REGE--AAVRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ I D++ L Q + ++ G S NL +I + L+R ++ Sbjct: 459 NK----LITNVVDLYHLTVDQLVTMDRM------GKKSAENLVKAIADSKTRGLDRVLYG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A S + F L+ V +G +A +IVE+ Sbjct: 509 LGIRLIGSKAAATIANVVKSMERFMTITKE----------ELVAVEEIGPTMADSIVEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q+ ++ +E L+ + +++E + +V TG L+ + R +A + + GA Sbjct: 559 QDSAHVEIIEGLIAAGLKMTVDVVEAAGNQMEGEIVVLTGKLEVMGRSEAGKILEAHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT ++I G++ GSKL KA +LG+++MNEE+F+ LL+ Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELLK 661 >gi|303228999|ref|ZP_07315809.1| DNA ligase (NAD+) [Veillonella atypica ACS-134-V-Col7a] gi|302516413|gb|EFL58345.1| DNA ligase (NAD+) [Veillonella atypica ACS-134-V-Col7a] Length = 666 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 232/703 (33%), Positives = 378/703 (53%), Gaps = 46/703 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L++E+++ YY P + D EYD R + + P+ P+ P + Sbjct: 4 KDRIEQLQKELTHAQYLYYVKDNPTMSDFEYDQKYRELVDLETSHPEYIV---PSSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + + KV H P LSL +++ +D+R F R+ + + + + LE KIDG Sbjct: 61 VGIKADGPFEKVVHGRPMLSLSNVFSADDVRAFDQRVTKELGHQ---TKAYVLELKIDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G FV A RGDG GEDV+A +R I +IP L N PE IE+RGE Y+ ++ Sbjct: 118 AVNLHYENGIFVRAVTRGDGKVGEDVTANVRTIKSIPLYLE-NAPEFIEIRGEAYMPHSE 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E G + NPRNAA+G LR+ +P +R L FF + +G S Q E Sbjct: 177 FKRINEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSESGANIHTQEE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L + F VN R T ++ N R LPYD DG+V KV++F Q+ LG Sbjct: 237 LLHTLENFHFSVNPHYRVCKTVDEVIEAINYWGEKRHELPYDTDGMVIKVNDFDDQEVLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ P+W ++K+ ++ T + DI I +GRTG+LTP LEPV + G ++ TLHN+ Sbjct: 297 STAKDPKWATAYKYPPEEVETIVKDITINVGRTGVLTPTGELEPVFVSGTNVSRVTLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD VL+ +A E+IP+V+ ++ +R PF+ P CP+ Sbjct: 357 DFIT-----------EKDIRIGDHVLIHKAAEIIPEVIRVLPEKRTGSEVPFTIPDHCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S VR + G+ AA RCT C A + E++ HF SRDA NI+GLG ++ Sbjct: 406 CESPAVR----RDGE--AAIRCTNK-HCPAIEKEQIIHFASRDAMNIDGLGPSIVENLIN 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I D++ L +T I + G S NL +I ++ L+R +F Sbjct: 459 EK----LITNVVDLYHL------TTESIMGMDRMGKKSADNLVKAIADSKSRGLDRVLFG 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR +G++ A ++A N + ++ + D+ L+ V +G +A +I+E+ Sbjct: 509 LGIRLIGSKAAGTIA-------NVVKSMDRFLTITKDE---LVAVEEIGPTMADSIIEYR 558 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 ++P++I + L+ ++ +E+E + +V TG L+ + R +A + + + GA Sbjct: 559 EDPQHIEIINGLIDAGLKMDVDVQETAGNEMEGETVVLTGKLEVMGRSEAGKLLEKHGAK 618 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V+ +S+KT ++I G++ GSKL KA +LG++++NEE+F LL+ Sbjct: 619 VTGSVSKKTTLVIAGEDSGSKLTKANELGIRVINEEEFTELLR 661 >gi|313125027|ref|YP_004035291.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551] gi|312291392|gb|ADQ65852.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551] Length = 694 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 247/715 (34%), Positives = 380/715 (53%), Gaps = 56/715 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E+LS E A +E L + + HD YY + P++ D YDAL R + AF DL Sbjct: 26 PVESLSAEAAEREARLLREAVREHDHRYYVAADPLVADRTYDALFNRLQELEDAF-DL-- 82 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 +D + P ++GGE L V H P LS+++ D+R F R+ ++ + Sbjct: 83 -DDESSPTRRVGGEPLDELDTVEHVAPMLSIDQSVEAADVRDFDRRV-----REAVGEVR 136 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + EPK DG + + YE G++V AA RGDG G+DV+A +R I +IP L + P+ + V Sbjct: 137 YVCEPKFDGLSVEVVYEDGEYVRAATRGDGERGDDVTAQVRTIRSIPLRLRGDYPDFLTV 196 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+ ++ F LN E I +P+ANPRNAA G LR+L+P+ R L+ F + + Sbjct: 197 RGEVYMPRDAFQELNRERIEADEEPFANPRNAAVGTLRQLDPSVTADRPLDCFFYDVLDA 256 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S++ + Q L ++ G N+ V G ++Y +E+ + R L Y+IDG V KV Sbjct: 257 SDV-PETQTATLSRLDSWGLRTNDRVESVADIDGAIAYRDELMAAREDLNYEIDGTVIKV 315 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D ++QLGE +RS RW ++KF + T + D+ +Q+GRTG LTPVA L+PV++GG Sbjct: 316 DRRDQREQLGETSRSVRWAFAYKFPARSEVTTMTDVVVQVGRTGRLTPVALLDPVDVGGV 375 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ A+LHN + I+ L + +GD V +KRAG+VIP V +++ E+H + Sbjct: 376 TVSRASLHNPEEIERL-----------GVNIGDEVRIKRAGDVIPDVEEVV--EKHSEGT 422 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F FP CP+C S V R+ G L CTGGL C AQ + + H+ R A +IEGL Sbjct: 423 -FDFPEECPVCGSPVNRE-----GPLA---YCTGGLTCEAQLVRAVDHYAMRGALDIEGL 473 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G ++++ D +P D++ L+R + + + G+G S NL I + Sbjct: 474 GGERVEQLV---DEGLIEGLP-DLYRLERDE------LSELEGWGKTSADNLVTEIEATK 523 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + L F+ LGI VG AR+LA+ + S + A + L V VG Sbjct: 524 SPELSSFLVGLGIPEVGGSTARNLARAFGS----------LDAVMDASVEELEEVEDVGP 573 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +A+ I EF+ N A+ A ++ + E E++ VFTG+L + R A Sbjct: 574 TVAEKIREFFDTESNRKAI-AEMRSLGVEPETAETAGGDELDGLTFVFTGSL-AVTRGDA 631 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 QE V GA ++ +S TD +++GDNPG SK + A V +++E++F LL + Sbjct: 632 QELVQAHGANATSSVSGNTDYLVIGDNPGQSKRDDAAANDVPVLDEDEFAELLAE 686 >gi|260773253|ref|ZP_05882169.1| DNA ligase [Vibrio metschnikovii CIP 69.14] gi|260612392|gb|EEX37595.1| DNA ligase [Vibrio metschnikovii CIP 69.14] Length = 591 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 227/629 (36%), Positives = 358/629 (56%), Gaps = 46/629 (7%) Query: 96 LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRG 155 LSL+ + +L F RI + F EPK+DG +++ Y G+ AA RG Sbjct: 2 LSLDNAFADSELDSFFRRIGE--RVAATQHARFCCEPKLDGLAVSLLYIDGRLTQAATRG 59 Query: 156 DGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 DG +GE+++ +R I +IP LS P IEVRGEV++ K F +N + + G+K + Sbjct: 60 DGTTGENITENVRTIKSIPLKLSGTGWPSRIEVRGEVFMPKEGFERMNAQALKKGQKVFV 119 Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNG 271 NPRNAA+G LR+L+ + IT R L F+ + +G + Y+ +++ G PV+ Sbjct: 120 NPRNAAAGSLRQLD-SRITAKRPLAFYAYSVGVVEGAELSTSHYDRFLQLKSWGLPVSPE 178 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 ++ + YY + + R+ LPY+IDG+V KVD+ +LQ++LG AR+PRW I++KF Sbjct: 179 TQRVENAQQVKDYYQTIMAKRADLPYEIDGVVIKVDDIALQEKLGFVARAPRWAIAYKFP 238 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ TRL +++ Q+GRTG +TPVA+LEP+ +GG ++NATLHN D I+ L Sbjct: 239 AQEEMTRLNEVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNADEIERL--------- 289 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 + VGD V+++RAG+VIP++V +++ R +AQP FPS CP+CQS D+ G+ Sbjct: 290 --GVMVGDTVIIRRAGDVIPQIVSVVLERRPQEAQPIIFPSHCPVCQS----DVERVEGE 343 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 VA RCTGGL C AQ+ E LKHFVSR A +++GLG + ++ + E + PAD+F Sbjct: 344 AVA--RCTGGLVCQAQRKEALKHFVSRKAMDVDGLGDKVIEQLVERE----MVETPADLF 397 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L+ + T ++ G S N+ ++ + +L RF+++LGIR VG A +LA Sbjct: 398 KLRAGELTVLDRM------GPKSAQNITQALINAKRTTLARFLYALGIREVGEATAMNLA 451 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL--L 629 +++ + + +Q LI V VG I+A + F+ +N V+ L L Sbjct: 452 QHFCTLEAISQA----------SIEQLIGVQDVGMIVASHVHAFFSQEKNQRVVQELRDL 501 Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 P I + + K +V TG+L ++ R +A+ + LGA V+ +S+ TD++ Sbjct: 502 GVTWPDIEPQDVAKPQPLAGKTVVLTGSLVQLSRTEAKAALQSLGAKVTGSVSKNTDMLF 561 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G+ GSKL KAQ+LG++I +E+ L LL Sbjct: 562 AGEAAGSKLVKAQELGIEIFSEQDLLDLL 590 >gi|304385588|ref|ZP_07367932.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284] gi|304328092|gb|EFL95314.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284] Length = 675 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 245/721 (33%), Positives = 399/721 (55%), Gaps = 59/721 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PIE +++ +A + L +++ + YY P + D YD A+ AFP++A Sbjct: 6 PIEKMNLTEANELAEQLREKLDRWSELYYTKDAPEVEDYVYDENYADLQALEQAFPEIAS 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ ++GGE+ KVTH+ P LS+ +++ E+L +F RI QK + + Sbjct: 66 ---PDSITQRVGGEVLAGFTKVTHTEPMLSMGDVFSKEELAEFDQRI----QKNVGHPVD 118 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG I++ YE GK V + RGDG+ GED++ ++ I ++P+ LS P +EV Sbjct: 119 YNVELKIDGLAISLVYEDGKLVQGSTRGDGNIGEDITKNLKTIKSVPQTLSR--PLSLEV 176 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245 RGE Y+ K F LN++ A G+ +ANPRNAA+G LR+LN T IT R L+ F++ L + Sbjct: 177 RGECYMPKAAFAKLNEQQSAAGKSVFANPRNAAAGSLRQLN-TQITKARELDTFIYTLVE 235 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + Q+E +Q M LGF N ++ + Y + R LPY IDG+V K Sbjct: 236 PEVLGVQTQHEAIQAMAELGFNTNPTQTVCHSLEEVWDYIERYEGQRDDLPYGIDGIVLK 295 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ LQ +LG + PRW I++KF ++ +T + DI+ +GRTG++TP A ++PV + G Sbjct: 296 VNDLGLQAELGHTVKVPRWEIAYKFPPEEEATVVRDIEWSVGRTGVVTPTAVMDPVQLAG 355 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ ATL+N D + +D+R+GD VL+ +AG++IP++ +++++R D Sbjct: 356 TTVSRATLNNVDQLT-----------AKDVRIGDTVLLHKAGDIIPEITRVVLDKRPADV 404 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P+ CP C +V LN + A RC C AQ + RL+HF SR+A NI G Sbjct: 405 ADLTIPNQCPSCGKELVH-LNGEV-----ALRCINP-DCPAQIVARLEHFGSRNAMNIMG 457 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q+ + F I D++ L Q + + GF + V NL ++I+ Sbjct: 458 LGPKQIQQLYAK---GF-IHHFDDLYKLTADQ------LSQLDGFKEKRVNNLLEAIDSS 507 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R SLER + LGI+ VG ++AR+LA+ + S ++ ++ + +++ + V VG Sbjct: 508 RQNSLERLVNGLGIQGVGTKMARTLAEAFGS-------MDRLMEASVEEFDA---VDTVG 557 Query: 606 DIIAQAIVEFYQN--PRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTLQ 659 + +A + F+Q+ RN+ LK V ++ S EN KK+V TG L+ Sbjct: 558 ETLANNLATFFQSEAARNMIDE---LKAVDVNMEYLGAQPSEAPENYFNGKKVVLTGKLE 614 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R++ +E + LGA V+ +S+KTD++I G + GSKL KAQ LGV++++E L L+ Sbjct: 615 HFTRNELKEKLLNLGADVAGSVSKKTDVLIAGADAGSKLTKAQDLGVEVIDEATALEKLE 674 Query: 720 Q 720 Q Sbjct: 675 Q 675 >gi|270290149|ref|ZP_06196375.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4] gi|270281686|gb|EFA27518.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4] Length = 675 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 245/721 (33%), Positives = 400/721 (55%), Gaps = 59/721 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PIE +++ +A + L +++ + YY P + D YD A+ AFP++A Sbjct: 6 PIEKMNLTEANELAEQLREKLDRWSELYYTKDAPEVEDYVYDENYADLQALEQAFPEIAS 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ ++GGE+ KVTH+ P LS+ +++ E+L +F RI QK + + Sbjct: 66 ---PDSITQRVGGEVLAGFTKVTHTEPMLSMGDVFSKEELAEFDQRI----QKNVGHPVD 118 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG I++ YE GK V + RGDG+ GED++ ++ I ++P+ LS P +EV Sbjct: 119 YNVELKIDGLAISLVYEDGKLVQGSTRGDGNIGEDITKNLKTIKSVPQTLSR--PLSLEV 176 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245 RGE Y+ K F LN++ A G+ +ANPRNAA+G LR+LN T IT R L+ F++ L + Sbjct: 177 RGECYMPKAAFAKLNEQQSAAGKSVFANPRNAAAGSLRQLN-TQITKARELDTFIYTLVE 235 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + Q+E +Q M LGF N ++ + Y + R LPY IDG+V K Sbjct: 236 PEVLGVQTQHEAIQAMAELGFNTNPTQTVCHSLDEVWDYIERYEGQRDDLPYGIDGIVLK 295 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ LQ +LG + PRW I++KF ++ +T + DI+ +GRTG++TP A ++PV + G Sbjct: 296 VNDLGLQAELGHTVKVPRWEIAYKFPPEEEATVVRDIEWSVGRTGVVTPTAVMDPVQLAG 355 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ ATL+N D + +D+R+GD VL+ +AG++IP++ +++++R D Sbjct: 356 TTVSRATLNNVDQLT-----------AKDVRIGDTVLLHKAGDIIPEITRVVLDKRPADV 404 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P+ CP C +V LN + A RC C AQ + RL+HF SR+A NI G Sbjct: 405 ADLTIPNQCPSCGKELVH-LNGEV-----ALRCINP-DCPAQIVARLEHFGSRNAMNIMG 457 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q+ + F I D++ L Q + + GF + V NL ++I++ Sbjct: 458 LGPKQIQQLYAK---GF-IHHFDDLYKLTADQ------LSQLDGFKEKRVNNLLEAIDRS 507 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R SLER + LGI+ VG ++AR+LA+ + S ++ ++ + +++ + V VG Sbjct: 508 RQNSLERLVNGLGIQGVGTKMARTLAEAFGS-------MDRLMEASVEEFDA---VDTVG 557 Query: 606 DIIAQAIVEFYQN--PRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTLQ 659 + +A + F+Q+ RN+ LK V ++ S EN KK+V TG L+ Sbjct: 558 ETLANNLATFFQSEAARNMIDE---LKAVDVNMEYLGAQPSEAPENYFNGKKVVLTGKLE 614 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R++ +E + LGA V+ +S+KTD++I G + GSKL KAQ LGV++++E L L+ Sbjct: 615 HFTRNELKEKLLNLGADVAGSVSKKTDVLIAGADAGSKLTKAQDLGVEVIDEATALEKLE 674 Query: 720 Q 720 Q Sbjct: 675 Q 675 >gi|289577826|ref|YP_003476453.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9] gi|289527539|gb|ADD01891.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9] Length = 662 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 242/706 (34%), Positives = 397/706 (56%), Gaps = 49/706 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ ++ L ++I+YH+ YY +P I D EYD L R + +P+L + P+ P + Sbjct: 4 KERINELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEL---KTPDSPSQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE TH +P LSL ++ +L+ F R+ ++ + + +E KIDG Sbjct: 61 VGGEPLKEFEPFTHIVPMLSLANAFSEGELKDFDRRV-----REAVGDVEYVVELKIDGL 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G F + RGDG GE+V+ ++ I +IP L N+ + VRGEV++ + Sbjct: 116 SVELIYENGIFTVGSTRGDGIIGENVTPNLKTIKSIPLRLKDNVSLV--VRGEVFMPRAS 173 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E +G +ANPRNAA+G LR+L+P R L+ F+ L + K E Sbjct: 174 FERLNTEREKLGESLFANPRNAAAGSLRQLDPKVTAKRDLDIFIFNLQRVEGRKFKTHVE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ ++ GF V ++ + ++ E+++++ LPYDIDG V KV++ ++ LG Sbjct: 234 TLQFLKEQGFKVIPIHKKCSNIDEVIREIEEIRNLKDKLPYDIDGAVVKVNDLEKREILG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + A+ PRW I+ K+ ++ T++LDI +Q+GRTG LTP A LEPV I G++++ ATLHNE Sbjct: 294 QTAKEPRWAIAFKYPAERKKTKVLDIIVQVGRTGALTPTAILEPVPISGSVVSRATLHNE 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYIK +DIR+GD V++++AGE+IP+VV+++ ER + F P+ CP+ Sbjct: 354 DYIK-----------EKDIRIGDTVIIQKAGEIIPEVVEVVKEERTGHEREFIMPNKCPV 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VR G+ A RCT + C AQ L + HF S+DA +IEGLG ++ Sbjct: 403 CGALAVR----LPGE--AVRRCT-SVNCPAQLLRGIIHFASKDAMDIEGLGPAIINQLLS 455 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + I AD++ L+ ++ GD SV NL ++I + + L+R +F Sbjct: 456 NG----LIHNIADLYYLKYEDLIQLERM------GDKSVKNLLNAIEESKTRDLDRLLFG 505 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G++ A+ +A+++ + +++I+ +D+ L P VG +A++IV F+ Sbjct: 506 LGINLIGSKAAQVIAEHF-------KTMDDIMKAKFEDFTKL---PDVGPKMARSIVSFF 555 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +N+ +E L K ++ VSS E K V TG L+ R +A + + G Sbjct: 556 AEKQNVETIEKLKKAGVNMKKLSKEKVSSIFEGKTFVLTGALENYTREEATRIIEERGGK 615 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 V+ +S+KTD ++VG +PGSKL+KAQ+LG++I++E+QF +L+ N Sbjct: 616 VTNSVSKKTDYVLVGKDPGSKLKKAQELGIEIIDEKQFEEMLKGEN 661 >gi|300691610|ref|YP_003752605.1| DNA ligase [Ralstonia solanacearum PSI07] gi|299078670|emb|CBJ51328.1| DNA ligase [Ralstonia solanacearum PSI07] Length = 813 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 239/681 (35%), Positives = 362/681 (53%), Gaps = 73/681 (10%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY +P + D+EYD L R +A+ P+L + P+ P ++GG + V H +P Sbjct: 31 YYVLDQPSVPDAEYDRLYRELEALEADHPEL---KTPDSPTLRVGGAVLPEFAPVRHVVP 87 Query: 95 TLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 LS+ E + F + R + D S+ + E K DG I +RYEKG V A Sbjct: 88 MLSIRTETDTTADGALAFDASVRRELGLAESDPSVEYAAELKFDGLAINLRYEKGFLVQA 147 Query: 152 ALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 A RGDG +GEDV+ IR I IP R ++ +P+++EVRGEVY+ ++DF LN Sbjct: 148 ATRGDGTTGEDVTQNIRTIRQIPLGLRPVNGAVPDVLEVRGEVYMRRDDFERLNARQRER 207 Query: 209 GRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEM-------LQK 260 G K + NPRN A+G +R+L+P R L+FF +GLG+ A G EM L Sbjct: 208 GEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGE-----AAGWAEMPGTHAGVLDA 262 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + GFPV++ G+V ++ ++++ R +LP+DIDG+VYKV+ +LQ++LG R R Sbjct: 263 LVAFGFPVSHERAAVTGGEGLVRFHADIRAKRDSLPFDIDGVVYKVNSLALQRELGFRTR 322 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 PRW ++HK+ ++A T + I +Q+GRTG +TPVARL PV +GG +TNATLHNED ++ Sbjct: 323 EPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNATLHNEDEVR 382 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPDA 425 +D+RVGD V+V+RAG+VIP+VV +++ R P Sbjct: 383 -----------RKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPAQQPKY 431 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 PF P CP+C S VVR+ G+ VA RC+GGL CSAQ+ E ++HF R +IEG Sbjct: 432 PPFELPKSCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAGRRMMDIEG 485 Query: 486 LGKQQLDFFFKSE---DPAFSIRIPADIF-TLQRRQQTSTTKIENILGFGDVSVT---NL 538 LG++ +D + E A R+ D F ++RR + G ++ NL Sbjct: 486 LGERYIDNLVELEYVHGIADLYRLTLDDFLEMKRRADERDGVTPETVAAGKIATKWAENL 545 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 I + L RF+F+LGIRHVG A++LA + S + + L Sbjct: 546 LAGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPL----------L 595 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTG 656 + +P VG +A+AI +F+ P+N A++ALL G H ++E +L Sbjct: 596 LTLPDVGATVAEAIADFFAEPKNQQALDALLAAGVTPQGEHPPGAKLRDQLEPAELYAAL 655 Query: 657 TLQKIQRHKAQEYVTQLGAVV 677 + K+ ++++ T + A+ Sbjct: 656 GVPKLTATRSKQLATLVPALA 676 Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 46/73 (63%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +V TGTL + R A+ + GA VS +S+KTD ++ G GSKL +AQ+LGV Sbjct: 734 LSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSKKTDYLVAGVEAGSKLARAQELGV 793 Query: 707 KIMNEEQFLFLLQ 719 ++++E L LLQ Sbjct: 794 RVLDEAGMLALLQ 806 >gi|299820617|ref|ZP_07052507.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601] gi|299818112|gb|EFI85346.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601] Length = 674 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 249/713 (34%), Positives = 386/713 (54%), Gaps = 63/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K +L +E++ + YY P + D YD + I A PD + P+ + Sbjct: 5 KKRYEALIEELNQYSYDYYVQDNPSVEDVVYDKAMQELLKIEEAHPDWITVDSPS---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ KVTH P LSL + +DLR F RI + D + E KIDG Sbjct: 62 VGGEILEGFQKVTHKTPMLSLGNAFGEDDLRDFDRRIQD--RIGDGTEYEYMCELKIDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++ YE G++ A RGDG +GED++A +R + +IP L + IEVRGE Y+ K Sbjct: 120 AVSLIYENGEYRQGATRGDGTTGEDITANLRTVRSIPIKLKETLS--IEVRGETYMPKKS 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQY 255 F LN G +ANPRNAA+G LR+L+ T I R L+ F++ + ++ Sbjct: 178 FQKLNGAREEEGLPLFANPRNAAAGSLRQLD-TKIAAKRNLDIFLYSVADFGDMGVTKHS 236 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L + LG VN R +++Y E + RS L Y+IDG+V K+++ Q+++ Sbjct: 237 EGLDYLEKLGLKVNKERRVCKNIEEVLAYVEEWTAKRSDLAYEIDGIVVKLNDLRQQEEV 296 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +SPRW I++KF ++ T L DI++++GRTG++TP A L+PV++ G ++ A+LHN Sbjct: 297 GYTVKSPRWAIAYKFPAEEVPTVLRDIELRVGRTGVITPTAILDPVHVAGTTVSRASLHN 356 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED IK +DIR+ D V++K+AG++IP+V+ + +R + F P CP Sbjct: 357 EDLIK-----------QKDIRIKDTVMIKKAGDIIPEVIRSLPEKRTGSEEEFHMPVHCP 405 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S +VR G++ A RC C AQ E L HFVSR A NI+GLG++ + F Sbjct: 406 ECGSELVR----LEGEV--ALRCINP-KCPAQLKEGLIHFVSRSAMNIDGLGEKVVRQLF 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 E I AD++ L + + ++ G+ SVTNL +I K + SLER +F Sbjct: 459 THE----LIHDVADLYFLSKEELLQLERM------GEKSVTNLLAAIEKSKQNSLERLLF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 LGIRHVGA+ ARSLA ++ + N + + ++IA N+ +G+I+A +IV Sbjct: 509 GLGIRHVGAKAARSLAIHFETMDNVKEASLEDLIAIND-----------IGEIMADSIVT 557 Query: 615 FYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHK 665 +++N V +LL+E+ + G + V E KK+V TG L++++R + Sbjct: 558 YFENEE----VHSLLQELERAGVNMTYTGPRLEEVPEEDLVFAGKKVVLTGKLEQLKRDE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + LG VS +S+ TDI++ G + GSKLEKA++L + I +E L L Sbjct: 614 AKALIESLGGSVSGSVSKNTDIVVAGSDAGSKLEKAEELSIPIWSENDLLEYL 666 >gi|83748812|ref|ZP_00945825.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551] gi|207743250|ref|YP_002259642.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein [Ralstonia solanacearum IPO1609] gi|83724504|gb|EAP71669.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551] gi|206594647|emb|CAQ61574.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein [Ralstonia solanacearum IPO1609] Length = 813 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 236/670 (35%), Positives = 355/670 (52%), Gaps = 63/670 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY +P + D+EYD L R +A+ P+L P+ P ++GG + V H +P Sbjct: 31 YYVLDQPSVPDAEYDRLYRALEALEAEHPEL---RTPDSPTLRVGGAVLPEFAPVRHVVP 87 Query: 95 TLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 LS+ E + F + R + D I + E K DG I +RYE+G V A Sbjct: 88 MLSIRTETDTTADGALAFDASVRRELGLAESDPPIEYAAELKFDGLAINLRYEQGFLVQA 147 Query: 152 ALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 A RGDG +GEDV+ IR I IP R + +P+++EVRGEVY+ ++DF LN Sbjct: 148 ATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLNARQRER 207 Query: 209 GRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAKGQYEMLQKMRCLG 265 G K + NPRN A+G +R+L+P R L+FF +GLG+ + + ML + LG Sbjct: 208 GEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPETHSGMLDALVALG 267 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 FPV+ G+V ++ + + R +LP+DIDG+VYKV+ +LQ++LG R R PRW Sbjct: 268 FPVSKERAAVMGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNALALQRELGFRTREPRWA 327 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++HK+ ++A T + I +Q+GRTG +TPVARL PV +GG +TNATLHNED ++ Sbjct: 328 VAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEVR----- 382 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPDAQPFSF 430 +D+RVGD V+V+RAG+VIP+VV +++ R P PF Sbjct: 383 ------RKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPAQQPKYPPFEL 436 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S VVR+ G+ VA RC+GGL CSAQ+ E ++HF R +IEGLG++ Sbjct: 437 PKSCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERY 490 Query: 491 LDFFFKSE---DPAFSIRIPADIF-TLQRRQQTSTTKIENILGFGDVSVT---NLYDSIN 543 +D + E A R+ D F ++RR + G ++ NL I Sbjct: 491 IDNLVELEYVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAENLLAGIQ 550 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + L RF+F+LGIRHVG A++LA + S + + L+ +P Sbjct: 551 ASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPL----------LLTLPD 600 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKI 661 VG +A+AI +F+ P+N A++ALL G H + S++E +L + K+ Sbjct: 601 VGATVAEAIADFFDEPKNQQALDALLAAGVAPQGEHPPSAKLRSQLEPAELYAVLGVPKL 660 Query: 662 QRHKAQEYVT 671 ++++ T Sbjct: 661 TATRSKQLAT 670 Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 47/73 (64%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +V TGTL + R A+ + GA VS +S+KTD ++ G+ GSKL KA++LGV Sbjct: 734 LSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSKKTDYVVAGEEAGSKLAKAEELGV 793 Query: 707 KIMNEEQFLFLLQ 719 K+++E L LLQ Sbjct: 794 KVLDEAGMLALLQ 806 >gi|218295128|ref|ZP_03495964.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23] gi|218244331|gb|EED10856.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23] Length = 674 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 244/713 (34%), Positives = 396/713 (55%), Gaps = 54/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E AR+ ++ L I YH+ YY P I D+EYD L R + FP+L + P Sbjct: 1 MTLEAARRRVNELRDLIRYHNYLYYVLDAPEISDAEYDRLLRELKELEERFPEL---QSP 57 Query: 72 NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G S F+ V H SL+ ++++++R F RI R +K +T+ Sbjct: 58 DSPTEQVGARPLESTFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK--GPFLYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G V+ A RGDG +GE+V+ + I TIPR L+ +P+ +EVRGE Sbjct: 116 EHKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIRTIPRRLT-GVPDRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247 VY+ FL LN E+ G + + NPRNAA+G LR+ +P R F+ GLG Sbjct: 175 VYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATFYALGLG-LE 233 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E K Q+++L +R GFPV +G +A G+ Y R LP++ DG+V K+D Sbjct: 234 ETGLKSQHDLLLWLRERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEADGVVVKLD 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +L ++LG AR+PR+ +++KF ++ TRLL + Q+GRTG +TPV LEPV I G+ Sbjct: 294 DLALWRELGYTARAPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLEPVFIEGSE 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ TLHNE +I+ L D+R+GD VLV +AG VIP+V+ ++ R + +P Sbjct: 354 VSRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKERRTGEEKP 402 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +P CP C ++ K GK+ HRC L C A++ E ++H+ SR A +I+GLG Sbjct: 403 ILWPENCPECGHALI-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIQGLG 453 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ + +R AD++ L++ + N+ G+ S NL I + + Sbjct: 454 EKLIEKLLEK----GLVRDVADLYRLKKED------LVNLERMGEKSAENLLRQIEESKG 503 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 LER +++LG+ VG +AR+LA + ++ ++ +D L+ V VG++ Sbjct: 504 RGLERLLYALGLPGVGEVLARNLALRF-------GHMDRLLEAGLED---LLEVEGVGEL 553 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A+AI+ ++P V LKE + E+ + ++ V TG L + R + + Sbjct: 554 TARAILNTLKDPEFRDLVRR-LKEAGVEMEAKEREGEA-LKGLTFVITGELSR-PREEVK 610 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV ++EE+ L+++ Sbjct: 611 ALLRRLGAKVTDSVSRKTGFLVVGENPGSKLEKARALGVPTLSEEELYRLIEE 663 >gi|55981066|ref|YP_144363.1| DNA ligase [NAD+] [Thermus thermophilus HB8] gi|118780|sp|P26996|DNLJ_THET8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+]; AltName: Full=Tth DNA ligase gi|94721|pir||A40363 DNA ligase (NAD) (EC 6.5.1.2) - Thermus aquaticus gi|155088|gb|AAA27486.1| DNA ligase [Thermus thermophilus] gi|155090|gb|AAA27487.1| DNA ligase [Thermus thermophilus] gi|55772479|dbj|BAD70920.1| DNA ligase [NAD+] [Thermus thermophilus HB8] Length = 676 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 255/720 (35%), Positives = 400/720 (55%), Gaps = 67/720 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E+ARK ++ L I YH+ YY + P I D+EYD L R + FP+L + P Sbjct: 1 MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEL---KSP 57 Query: 72 NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + F+ V H SL+ +N+++L+ F RI R +K +T+ Sbjct: 58 DSPTLQVGARPLEATFRPVRHPTRMYSLDNAFNLDELKAFEERIERALGRK--GPFAYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G VY A RGDG GE+V+ + IPTIPR L +PE +EVRGE Sbjct: 116 EHKVDGLSVNLYYEEGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLK-GVPERLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247 VY+ FL LN+E+ G + + NPRNAA+G LR+ +P + F+ GLG Sbjct: 175 VYMPIEAFLRLNEELEERGERIFKNPRNAAAGSLRQKDPRITAKRGLRATFYALGLG-LE 233 Query: 248 EIFAKG---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 E+ +G Q+ +L ++ GFPV +G +A G+ + Y + R LP++ DG+V Sbjct: 234 EVEREGVATQFALLHWLKEKGFPVEHGYARAVGAEGVEAVYQDWLKKRRALPFEADGVVV 293 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+DE +L ++LG AR+PR+ I++KF ++ TRLLD+ Q+GRTG +TPV LEPV + Sbjct: 294 KLDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGILEPVFLE 353 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ R + Sbjct: 354 GSEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGE 402 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P +P CP C R++ K GK+ HRC L C A++ E ++HF SR A +I+ Sbjct: 403 ERPIRWPETCPECGHRLL-----KEGKV---HRCPNPL-CPAKRFEAIRHFASRKAMDIQ 453 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDS 541 GLG++ ++ + ++ AD++ L++ E+++G G+ S NL Sbjct: 454 GLGEKLIERLLEK----GLVKDVADLYRLRK---------EDLVGLERMGEKSAQNLLRQ 500 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I + + LER +++LG+ VG +AR N A N+ L+ V Sbjct: 501 IEESKKRGLERLLYALGLPGVGEVLAR----------NLAARFGNMDRLLEASLEELLEV 550 Query: 602 PLVGDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 VG++ A+AI+E ++P R++ LKE + EK + ++ V TG L Sbjct: 551 EEVGELTARAILETLKDPAFRDLV---RRLKEAGVEMEAKEKGGEA-LKGLTFVITGELS 606 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R + + + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV + EE+ LL+ Sbjct: 607 R-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLE 665 >gi|169335238|ref|ZP_02862431.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM 17244] gi|169257976|gb|EDS71942.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM 17244] Length = 659 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 239/706 (33%), Positives = 388/706 (54%), Gaps = 56/706 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E +KE+ L +E+ H+ YY+ P I D +YD L R+ + +P + Sbjct: 1 MEDIKKEIEKLTEELLEHNRKYYEEDNPSISDYDYDMLIRKLTKLEEEYPQYKKE---YS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +++GG+ + KV H LSL ++ ++L +F R+ KK+ + +TLE K Sbjct: 58 PTDRVGGKALDAFDKVKHEYKQLSLSNAFSYDELLEFDQRV-----KKEIENPVYTLENK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG I + Y+KG A RGDG GEDV+ ++ I +IP L LN + VRGEV I Sbjct: 113 FDGLTIVLTYKKGLLSVGATRGDGEVGEDVTLNVKTIKSIP--LKLNEEVDLTVRGEVLI 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 K++F +N E G +ANPRN A+G +R+L+ R L+ F+ L Sbjct: 171 YKDNFEKINKEREKEGLSLFANPRNMAAGSIRQLDSKIAAKRNLDCFIFNLEHIEGKTLS 230 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM---KSIRSTLPYDIDGLVYKVDEF 309 E L ++ LGF V+ + F + ++E+ + R ++PY+IDG V K+++ Sbjct: 231 SHSESLDYLKSLGFKVS----EYKIFDNMKDIFDELIKKEDSRKSMPYEIDGAVIKLNDL 286 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++ LG ++PRW I++KF+E + T+L DI + +GRTG LTPVA LE V I G+ ++ Sbjct: 287 EERELLGSTNKNPRWAIAYKFSETKVKTKLTDIIVNVGRTGTLTPVAILEGVRIDGSFVS 346 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNEDYI DIR+GD V+VK+AGE+IP+V+ + +R D + F Sbjct: 347 RATLHNEDYI-----------NDNDIRIGDNVIVKKAGEIIPQVISSVKEDRKGDEKLFE 395 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C VVR + G +A +C + C A+ + HF SR+A NI+ LG++ Sbjct: 396 MPKNCPVCGKEVVR----QEGN--SAVKCI-NVDCPAKISREIIHFASREAMNIDTLGER 448 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + + I+ +DI+ L+ +++ IE++ G+ SV+N+ ++I K + S Sbjct: 449 VLETLIEKD----LIQDVSDIYKLEDKKKD----IESLEKMGEKSVSNMLNAIEKSKENS 500 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LE +F+L I VG + A+ LAK + + N N + ++ + +GD +A Sbjct: 501 LEDLLFALSINLVGKQGAKLLAKRFKTMDNLI----------NASYEDIVDINEIGDKMA 550 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I+ F++NP + +E LK V ++ +E+N + E V TGTL K +R +A++ Sbjct: 551 TEIINFFKNPSKLALIER-LKSVGVNMEYINEENEELKFEGMTFVLTGTLSKYKRSEAKK 609 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + G VS+ +S+KT ++ G+N GSK EKA++LGVKI++E++F Sbjct: 610 IIENYGGKVSSSVSKKTTYVLAGENAGSKEEKAKELGVKIISEDEF 655 >gi|22298400|ref|NP_681647.1| NAD-dependent DNA ligase LigA [Thermosynechococcus elongatus BP-1] gi|81743454|sp|Q8DKK2|DNLJ_THEEB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|22294579|dbj|BAC08409.1| DNA ligase [Thermosynechococcus elongatus BP-1] Length = 689 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 249/719 (34%), Positives = 384/719 (53%), Gaps = 67/719 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++L L Q SY YY +PI+ D YD L R + A+P+ P+ P +I Sbjct: 12 QQLRRLLQRASY---AYYALDQPIMEDEVYDQLYRELQELEAAYPEYI---TPDSPTQRI 65 Query: 79 GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFW----QKKDDNSIFFTLEPK 133 G E +S F+ V+H IP SLE + D+ + R R+W Q++ + E K Sbjct: 66 G-EAPVSQFESVSHRIPLYSLENAFTFADMVAWQERWQRYWRTLRQEEPLPPAEYVCELK 124 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG + + YE G V A RGDG GEDV++ +R I IP L+L N P ++EVRGE + Sbjct: 125 MDGVALALTYENGLLVRGATRGDGQRGEDVTSNVRTIRPIPLRLALDNPPPVVEVRGEAF 184 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-------- 243 + F LN E A G P+ANPRNAA+G LR+L+P + R L+FF + L Sbjct: 185 LPLERFHQLNQERQAQGEPPFANPRNAAAGTLRQLDPRIVAQRQLDFFAYALHLPEGGSV 244 Query: 244 --GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+ + Q ++L ++ LGF VN + +YY+ ++ R LPY DG Sbjct: 245 PLGENQAGEPQSQRQVLYALQHLGFRVNPHHADCPDLEAVKAYYDRWQTARHQLPYLTDG 304 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V K+++ LQ+ LG + PR I+ K+ +QA T +L I +Q+GRTG LTPVA L PV Sbjct: 305 IVVKLNDLKLQQTLGFTQKFPRGSIAWKYEPEQAITDVLAITVQVGRTGALTPVAELAPV 364 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G ++ ATLHN DYI L D+ +GD+V++ +AGE+IP++V + R Sbjct: 365 QLAGTTVSRATLHNADYIAEL-----------DLHIGDKVVIHKAGEIIPEIVRVFPELR 413 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P A+PF+ P+ CP C VVR N A RC G C A +++H+ SRDA Sbjct: 414 PPTARPFTMPTACPECHQPVVRPAN------EAVSRC-GNPRCPAIVRGQIRHWASRDAL 466 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I+GLG++ + E +R PAD++ L Q S ++ G S L + Sbjct: 467 DIQGLGEKLVQQLVTKE----LVRTPADLYRLTAAQLLSLERM------GQKSADKLLVA 516 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I + R ++ LGIRHVG+ A+ LA + S + A +A L V Sbjct: 517 IANSKQQPWPRVLYGLGIRHVGSVNAQLLADRFKSVEELA---TATVA-------DLCGV 566 Query: 602 PLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTG 656 +G+ IAQA+ E++Q+P + I ++AL +++ ++ +K +++E + K+ V TG Sbjct: 567 DGIGEEIAQAVQEWFQDPDHQSLIADLQALGLQLAAALHPAQKALTTEKSLNGKRFVITG 626 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 TL + R +A+ + + G VS +SR+TD ++VG+ GSKL +AQ+LG+ +NE + + Sbjct: 627 TLPTLTREQAKALIQKHGGHVSESVSRQTDYLVVGEKAGSKLRRAQELGIPCINETELI 685 >gi|289804564|ref|ZP_06535193.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 551 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 221/593 (37%), Positives = 348/593 (58%), Gaps = 55/593 (9%) Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189 E K+DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRG Sbjct: 2 ELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRG 61 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248 EV++ + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 62 EVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG---- 117 Query: 249 IFAKGQYE-----MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 I G+ L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V Sbjct: 118 ILEGGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVV 177 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + Sbjct: 178 IKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQV 237 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER Sbjct: 238 AGVLVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPE 286 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + +P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A ++ Sbjct: 287 ETRPIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDV 340 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + +D + E + PAD+F L + K+ + G S N+ +++ Sbjct: 341 DGMGDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALE 390 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVP 602 K + + RF+++LGIR VG A LA Y+ + + A I+ L +VP Sbjct: 391 KAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE-----------LQKVP 439 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTL 658 VG ++A + F+ N + LL E +P + + + + S K +V TG+L Sbjct: 440 DVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INAQEIDSPFAGKTVVLTGSL 498 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 ++ R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E Sbjct: 499 SQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDE 551 >gi|42521704|ref|NP_967084.1| DNA ligase [Bdellovibrio bacteriovorus HD100] gi|81618744|sp|Q6MRL9|DNLJ_BDEBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|39574234|emb|CAE77738.1| DNA ligase [Bdellovibrio bacteriovorus HD100] Length = 684 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 251/706 (35%), Positives = 382/706 (54%), Gaps = 53/706 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++K L++ IS HD Y+ KP I D EYD L I L S+ P+ Sbjct: 20 SKKRHEELKKIISEHDHNYHVLDKPTITDYEYDQLFAELLDIEKNPKGLDLSDSPS---Q 76 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + K H +P LSL ++ ED+ +F R+ +F +D + + E K DG Sbjct: 77 RVGGTVLEGFTKAQHRLPMLSLANSYSPEDIFEFDERVRKFLNTED--PVEYLCELKFDG 134 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISK 195 + + YE G+ V A RGDG GEDV+ I+ I +IP LS N P ++EVRGEV + K Sbjct: 135 LSMELIYENGQLVRAITRGDGTVGEDVTHNIKTIKSIPLKLSHKNPPPLLEVRGEVLMFK 194 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 DF LN+ G++ +ANPRNAA+G +R+L+ +R L FF + LG Q Sbjct: 195 EDFARLNETQQENGQQTFANPRNAAAGTVRQLDSRIAASRPLRFFGYALGAVEGETFNTQ 254 Query: 255 YEMLQKMRCLGFPVNNGVRQ-----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + + G P ++ A +V YY+ ++ +R LP+DIDG+V KV+ Sbjct: 255 KNIQEYFNDHGIPTVLPYKEDLLVVAKGPEEVVKYYHHIEKVRPKLPFDIDGVVIKVNSL 314 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+ LG ARSPRW + KF +QA T + DI +Q+GRTG LTPVA ++PV +GG +T Sbjct: 315 RLQEDLGLVARSPRWATAAKFKPEQAQTTVEDIVVQVGRTGALTPVAIMKPVKVGGVTVT 374 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPF 428 NATLHN+D I +DIR+GD V+++RAG+VIP+VV+++ ++ P D P+ Sbjct: 375 NATLHNQDEIT-----------RKDIRIGDTVIIQRAGDVIPEVVEVVNPDKRPADRLPY 423 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 S P CP C S V+ G++V RC L C A E LKHFV+R A NI+ +G Sbjct: 424 SIPERCPACDSVAVK----AEGEVVT--RCVNPL-CIAVVKESLKHFVARRAMNIDKVGD 476 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ D R +D + L + Q S + GD S N+ SI +N Sbjct: 477 RLIETLV---DNKLLTRF-SDFYRLTKEQILSLERQ------GDKSADNIIKSIENSKNP 526 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFIF+LGIR VG + + LA ++L+ F + L++VP +G + Sbjct: 527 TLARFIFALGIRFVGEQTGKHLADHFLTIDKFLEASEE----------ELLQVPEIGAKV 576 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A++I ++ NP+ + V+A++ E+ I + + + TGTL ++R A++ Sbjct: 577 AKSIRDWTGNPKLVDEVKAMI-ELGVKIAGPVRAQEGSLSGMSFLITGTL-PVKRDDAKD 634 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + + G + +S K + ++VGD+PGSK+EKAQ LGVKI++ E+ Sbjct: 635 LIERNGGKILGSVSSKLNYLVVGDDPGSKVEKAQGLGVKIISWEEL 680 >gi|313898151|ref|ZP_07831690.1| DNA ligase (NAD+) [Clostridium sp. HGF2] gi|312957179|gb|EFR38808.1| DNA ligase (NAD+) [Clostridium sp. HGF2] Length = 665 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 247/698 (35%), Positives = 378/698 (54%), Gaps = 52/698 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL S+ ++Y YY +P D EYD + A+ FP + DPN ++G Sbjct: 8 ELRSILDRLAYE---YYVLDQPSKSDQEYDRYYQELVALEDEFP---QYRDPNSITQRVG 61 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G + + KV H LSL +N+EDL F R+ + + +E KIDG + Sbjct: 62 GVVLDAFTKVEHKRTMLSLGNAFNLEDLHAFDERVREVVP-----NARYVVELKIDGLAM 116 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ Y G+FV A RGDG GEDV+ ++ IP+IP + L +EVRGEVY+ F Sbjct: 117 SLIYRDGRFVQALTRGDGVVGEDVTHNVKTIPSIPMHIPLQGE--VEVRGEVYMPNASFQ 174 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E G + +ANPRNAA+G +R+L+ + R L+ F + E E L Sbjct: 175 MLNEEREKNGEELFANPRNAAAGSIRQLDSSVAAKRKLDAFWYYFVNAQEYDIHSHEEAL 234 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 QKM + VN + + + E+ R+ LPY IDG+V KVD+ Q +LG Sbjct: 235 QKMSEMHLRVNPLRKVCERIDEVWQFIEEITEQRNDLPYAIDGMVIKVDDLDAQNRLGST 294 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 + PRW I++KF ++ T+LLDI + +GRTG +TP A LEPV + G ++ A LHNED Sbjct: 295 VKVPRWAIAYKFPAEEVITKLLDIVVTVGRTGRITPNAVLEPVRVAGTTVSAAQLHNEDM 354 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 IK +DIR+ D V+V++AG++IP+VV ++ R+ + FP+ CPIC Sbjct: 355 IK-----------EKDIRIHDDVVVRKAGDIIPEVVRPLLERRNDTQAVYHFPTHCPICG 403 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S +VR P+ AAH C C A+ +E + HF SRDA +I+ LG ++++FF K Sbjct: 404 SELVR--FPEE----AAHYCINQ-DCPARVVESMIHFASRDAMDIDTLGDKKVEFFHKQ- 455 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 F + DI+ L+ +Q ++ ++ GF + SV L D+I + LE I+ LG Sbjct: 456 --GF-LNTIEDIYCLKEHRQ----ELIDLEGFKEKSVDKLLDAIEDSKQNPLEDLIYGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IR VG + A+ LAK++LS ++ ++A N ++ L+ + +G I A++I F+ Sbjct: 509 IRQVGKKAAKVLAKHFLS-------MDALMAANEEE---LVAIKDIGQITAESITAFFHE 558 Query: 619 PRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 P+N+ + A LK + + + S K +V TGTL ++ R+ A+ + LGA V Sbjct: 559 PKNMELI-AHLKGYGLRMDTEAEQIQESSFSGKTIVLTGTLTQMTRNDAKALLESLGANV 617 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 S +S+KTD++I G+ GSKL KA LGV M+E+ F+ Sbjct: 618 SGSVSKKTDLVIYGEAAGSKLTKANSLGVMTMDEDTFM 655 >gi|224543223|ref|ZP_03683762.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM 15897] gi|224523856|gb|EEF92961.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM 15897] Length = 664 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 248/700 (35%), Positives = 387/700 (55%), Gaps = 57/700 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL +L + +Y YY P + D EYD L I P ++ P+ ++G Sbjct: 11 ELKALLNKYNYE---YYVQDNPTVSDQEYDRLMEELIRIEQVNPAWITTDSPS---QRVG 64 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE+ KVTH +SL I+N +++ F R+ + + E K+DG + Sbjct: 65 GEVLEGFKKVTHQRMMMSLGDIFNEDEVYTFNDRVTDVIPNPE-----YICELKLDGLSV 119 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ Y+ G Y A RG+G GED++ ++ I +IP + P +EVRGE+ + K Sbjct: 120 SLVYQDGVLQYGATRGNGTVGEDITHNVKTIRSIPLHIDFKGP--LEVRGEIIMPKKALE 177 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E G +AN RNAA+G +R+L+ R L+ F++ + + S++ A YE L Sbjct: 178 RLNEERTDAGLPLFANCRNAAAGSIRQLDSRVAAKRGLDAFLYHVPEASQLNASTHYECL 237 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 +K++ LGF N R+ T + +Y E+ +R TLPYDIDG+V KV++ Q++LG Sbjct: 238 EKIKDLGFKTNPYTRKCKTIQEVWNYIEEVAKLRPTLPYDIDGVVIKVNDLDSQRKLGYT 297 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A+ P+W I++KF ++ T+L DI IGRTG +TP A LEPV + G+L+ ATLHNED Sbjct: 298 AKVPKWAIAYKFPAEEVITKLKDIIFTIGRTGQITPNAVLEPVRVAGSLVQRATLHNED- 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 +R +DIR+GD V+V++AG+VIP+VV I R PF + CP C Sbjct: 357 --------NCIR--KDIRIGDDVIVRKAGDVIPEVVSAIKERRTGHEIPFKMITVCPKCG 406 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S +VR N AA+ C C ++++E+L HF SR+A NI+GLG + ++ F+ Sbjct: 407 SLLVRKPNE------AAYYCVNE-ECDSKKIEKLIHFASREAMNIDGLGDKIIEQFY--- 456 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 + F I DI+ L ++ +I +I GFG S+ L ++I + SLE+ +F LG Sbjct: 457 NLGFVTCI-EDIYHLGVHEK----EIMDIEGFGKKSMDKLLEAIENSKVNSLEKLLFGLG 511 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I+ +GA++A +LA ++ S A N +++ L + VGD IA ++ F +N Sbjct: 512 IKGIGAKMADTLAYHFGSMD----------ALLNANYVQLTSIKDVGDTIASSLAAFKRN 561 Query: 619 PRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 RN+ + A LKE+ ++ R E + + +K +V TGTL + R + ++Y+T G Sbjct: 562 ERNLELI-AHLKELGLNMDYLKVRQEGD--NPFRDKTVVITGTLTLMTRKQIKDYLTSQG 618 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 A V+ +S+KTD++IVG+NPGSK KA LG+ IMNE F Sbjct: 619 ANVTGSVSKKTDLVIVGENPGSKYTKAVDLGISIMNESAF 658 >gi|241889713|ref|ZP_04777011.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379] gi|241863335|gb|EER67719.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379] Length = 663 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 247/711 (34%), Positives = 393/711 (55%), Gaps = 57/711 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I++ +L SL + SY YY P I D+EYD L ++ + + +P+L N Sbjct: 4 IQEEILKLVSLLNKYSYE---YYVEDNPQITDTEYDTLYKQLEKLEEKYPELILE---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + K+TH IP LSL ++ EDL F R+ + ++ + + E K Sbjct: 58 PTQRVGDRVLDEFEKITHKIPMLSLSNTFSTEDLIDFDARVSKLVPSEN---VEYICELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I+I Y+ GK V AA RGDG GEDV+ I+ I +IP+VL EVRGEVY+ Sbjct: 115 IDGLAISINYDNGKLVSAATRGDGTVGEDVTENIKTIFSIPKVLK--DKRSFEVRGEVYL 172 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251 K F LN E +ANPRNAA+G LR+L+ + IT R L+ F++ + I + Sbjct: 173 PKKSFNILNKEREENNEVLFANPRNAAAGSLRQLD-SKITAKRRLSAFIYSIVGDDSIVS 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q L + PVN + + ++ Y N + LPYDIDG+V KV+ + + Sbjct: 232 --QENALNTAKEYELPVNPNFKLCKSIDEVIDYINYWTEHKQDLPYDIDGIVIKVNSYKV 289 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+Q+G +SPRW ++KF E++ +T+LLD+++ +GRTGI+TPVA L+P+ I G+ ++ A Sbjct: 290 QEQIGFTQKSPRWATAYKFPEEELATKLLDVELSVGRTGIITPVAILDPIVISGSTVSKA 349 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN+D I LD M V+VK+AGE+IPKVV ++ R + + P Sbjct: 350 SLHNKDIIDDLDIHIGDM-----------VVVKKAGEIIPKVVRVVKELRTEGSTKYQMP 398 Query: 432 SFCPIC-QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 S CP C Q V+D +P T RC C Q + ++ HF SRDA NIEGLG + Sbjct: 399 SNCPSCHQETYVKDNDPFT-------RCKNP-DCPDQNIRKIIHFASRDALNIEGLGDKV 450 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + +I D+++L R + + ++ G+ SV NL ++I K + SL Sbjct: 451 VATLYDKGIICHTI----DLYSLDRDKLIALERM------GEKSVDNLLNAIEKSKESSL 500 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++ I++LGI +VG + + LA+ Y++ NF N LI + VG I A+ Sbjct: 501 DKVIYALGILNVGKKAGKILAEKYVNLSNFM----------NATLEELINLDDVGQITAE 550 Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +I+++ + NI + L+ ++P +E ++ K +V TG L ++ R++A+E+ Sbjct: 551 SILDYLSDDNNIKFINDLINIGMNPQYEINEIKSNNIFSGKTVVLTGKLVELTRNEAKEF 610 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + GA V+ ++ KTD++I G+ GSKL KA+QLG++++NEEQF ++++ Sbjct: 611 LEKNGAKVTGSVTSKTDLVIAGEKAGSKLTKAEQLGIEVINEEQFANMVRE 661 >gi|167631047|ref|YP_001681546.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1] gi|254781344|sp|B0TDL0|DNLJ_HELMI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167593787|gb|ABZ85535.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1] Length = 675 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 253/710 (35%), Positives = 387/710 (54%), Gaps = 54/710 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + ++ L ++I HD CYY P I D+EYD L R + + P+L ++ P+ Sbjct: 13 AAQRIAELREQIRRHDYCYYVLDAPEISDAEYDRLMRELLDLEQSHPELVTADSPS---Q 69 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG+ + V+H +P LSL + +DLR+F R +++ D + + +EPKIDG Sbjct: 70 RVGGQPLAAFRAVSHRVPLLSLANAVDDQDLREFDRRA----RERADRPLTYVVEPKIDG 125 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + YE+G+F+ AA RGDG GED++ I+ + +P L +I + +EVRGE Y+ K Sbjct: 126 LTVVLSYEEGRFIRAATRGDGLIGEDITENIKTVRAVPLRLKRDI-KSLEVRGEAYLPKA 184 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG-Q 254 F LN+E G +ANPRNAA+G LR+L+P +R L + + + G Q Sbjct: 185 AFARLNEEREEAGEAAFANPRNAAAGSLRQLDPKVTASRPLRAYFYNILHLEGADGVGEQ 244 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E LQ + LG PVN R T ++ Y R LPY+IDG+V KV+E Sbjct: 245 VEALQMLEDLGLPVNPERRYCRTIDDVIDYCRYWTEHRHDLPYEIDGMVVKVNELDQYPL 304 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LGE A+SPR+ I+ KF +QA TR+ DI +++GRTG++TP A LEPV + G ++ ATLH Sbjct: 305 LGETAKSPRYAIAFKFPPEQAITRVRDITVKVGRTGVITPTAELEPVRLAGTTVSRATLH 364 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED I+ RDI +GD V++++AG++IP+V+ ++ +R + +PF P C Sbjct: 365 NEDIIR-----------ERDIHIGDYVVIQKAGDIIPEVLSVLKEKRTGEERPFFMPQTC 413 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S V R K AA RCT LAC AQ E L HF SRDA NIEGLG ++ Sbjct: 414 PECHSPVSR------LKGEAAIRCT-SLACPAQAKEGLIHFASRDAMNIEGLGPAVVNLL 466 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ A +R PAD++ L Q ++ G S NL +I ++ L I Sbjct: 467 WE----AGLVRDPADLYDLTAEQVAPLERM------GKKSAANLIAAIENSKSRGLAALI 516 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA+++ S + L V +G +A+++ Sbjct: 517 FALGIRLVGQTAAKTLARHFGSMDQLMKATTE----------ELQAVSEIGPKMAESLQR 566 Query: 615 FYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ P N ++ L L+ + G + V K +V TGTL + R +AQ + Sbjct: 567 WFAVPANRQMIDRLAEKGLQMETEKAG--DAGVPQTFAGKTVVLTGTLTTLDRREAQRLL 624 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GA V++ +S+KT ++I G+ GSKLEKA++L + I++E FL L+ + Sbjct: 625 EERGAKVASSVSKKTSLVIAGEAAGSKLEKAKELNIPILSEADFLQLIDR 674 >gi|326693831|ref|ZP_08230836.1| DNA ligase, NAD-dependent [Leuconostoc argentinum KCTC 3773] Length = 681 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 249/724 (34%), Positives = 385/724 (53%), Gaps = 69/724 (9%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + PIE LS A++E++ L+ +++ + YY+ P++ D YDAL R A+ AFP Sbjct: 4 EFTPIEQLSTSAAQQEVAQLQADLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAFPQ 63 Query: 65 LARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 + P +GG + S L KV H P LSL ++++E+L W ++ Sbjct: 64 FVTQDSPT---QNVGGALTKSGLAKVEHPAPMLSLGDVFSLEELAA--------WDERTT 112 Query: 124 NSIFF----TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 S+ F LE KIDG + + Y G+ V A+ RG+G GEDV+ ++ I IP+ L Sbjct: 113 KSLGFQSPYNLELKIDGLAVALTYVDGRLVQASTRGNGTIGEDVTRNVKTIKAIPQ--QL 170 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLN 237 P IEVRGE+Y+ K F ALN + A G +P+ANPRNAA+G LR+L+ +T R L+ Sbjct: 171 TEPLTIEVRGEIYMPKKSFAALNVQREADGLEPFANPRNAAAGSLRQLD-AQVTKQRELS 229 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 FV+ + + Q L + LG P + + I + + R TL Y Sbjct: 230 AFVYYTAEPEVLGVTTQSGALARFAELGLPTDTHNQVIEKMADIADFIATYTAKRDTLAY 289 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 IDG+V KV+ Q +LG + PRW I++KF ++A T + DI+ +GRTG +TP A Sbjct: 290 GIDGVVVKVNALDNQVELGNTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAV 349 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 ++PV + G + A+LHN DY++ +DIR+GD V + +AG++IP+V +I Sbjct: 350 MDPVQLAGTTVQRASLHNPDYLQ-----------QKDIRIGDTVTLHKAGDIIPEVGQVI 398 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +++R D+ + P CP C S +V +G++ A RC C+AQ E L HF S Sbjct: 399 LSQRPADSTAYPIPVVCPACGSELVH----ISGEV--ALRCINPF-CAAQIQEGLTHFAS 451 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R+A NI G+G + +D K A I+ A I+ L Q S K F + S N Sbjct: 452 RNAMNIAGMGPRVIDQLLK----ANYIKDVASIYRLDMTQLLSLDK------FQEKSAAN 501 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +I + + SLER +F LGIR VGA+ AR +A+ + + A+ IA + Sbjct: 502 LLAAITQSKENSLERLLFGLGIRLVGAKAARLVAEKFKTLSAIAEATVPEIASIDG---- 557 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKK 651 +G+ IAQ+IV+++ +P + + LL E++ + + E + +S KK Sbjct: 558 ------IGEAIAQSIVQYFSHPES----QQLLIELTAAGVNQTYLSDVEVDENSFFYGKK 607 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +V TG L++ R A +++ GA V+ +S KTD++I G + GSKLEKA LGV + E Sbjct: 608 IVLTGKLEQSSRPAATKWLQDHGAQVAGSVSAKTDLLIAGADAGSKLEKATALGVLVWTE 667 Query: 712 EQFL 715 ++FL Sbjct: 668 QEFL 671 >gi|312898543|ref|ZP_07757933.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359] gi|310620462|gb|EFQ04032.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359] Length = 672 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 241/710 (33%), Positives = 373/710 (52%), Gaps = 46/710 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 ++A L L +++ ++ YY KP I D +YD L R + I A P+ ++ P Sbjct: 4 DKAYARLLELREKLDFYSYQYYTLDKPTITDYDYDMLYRELETIEGAHPEWVTADSPT-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G +++ K TH P LSL ++N +LR+F R+ ++ + +E KI Sbjct: 62 -QRVGHKISGGFNKYTHDRPMLSLGDVFNDNELREFDRRVRSDLGEQVPQ---YVVELKI 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + YE G FV RGDG GEDV+ +R I TIP + + P I E+RGEVY+ Sbjct: 118 DGLAINLIYENGMFVRGVTRGDGVVGEDVTNNVRTIKTIPLKIDSHSPHI-EIRGEVYMP 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 F ALN + +P+ANPRNAA+G LR+L+P R L+FF + +G T + Sbjct: 177 VRAFDALNIQRSEDELEPFANPRNAAAGSLRQLDPQITAQRNLSFFAYAIGGTVGMTIHS 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q E+L+ ++ L F VN R ++ ++++ + R LPY DG+V KV+ F+ Q+ Sbjct: 237 QEELLEDLKKLRFHVNKEYRVFDSIEDVITFIHSWDERRDELPYATDGMVIKVNSFAQQE 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG + PRW I++KF ++A T++ I + +GRTG+LTP A L PV + G + ATL Sbjct: 297 LLGNTVKIPRWAIAYKFPPERAKTKVEGISVTVGRTGVLTPAADLTPVRLAGTTVKRATL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNEDYIK +DIR+GD V++++AGE+IP+VV +V ER F P+ Sbjct: 357 HNEDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVGPVVKERTGQENVFVMPTH 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C VVR G+ AA RC C A +++ HFVSR+A NI+GLG Sbjct: 406 CPGCGHEVVR----PDGE--AATRCVNP-ECPAILSQKVAHFVSRNAMNIDGLGDAITAQ 458 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + I +DI+ L++ S + GF D S NL ++ + + L R Sbjct: 459 LLQQG----LIHRVSDIYDLKKEDLIS------LEGFADKSADNLLKAVEDSKKVGLARV 508 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VGA+ AR LA+++ S + A L + +G IA+++ Sbjct: 509 LFALGIRFVGAKAARILAEHFGSVEALAAASTE----------ELTDIDEIGPRIAESVH 558 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + + V AL + + S + +V TG L+ + R +A+E V Sbjct: 559 TWIRTDEARKLVAALEAAGVDMTAQKRQTKGSAFRGEIVVLTGKLETMTRKEAEEAVVAG 618 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 G + ++ KT +++ G +PGSK EKA+ LG I++EE+F+ +Q+ T Sbjct: 619 GGKCTGSVTGKTTLVVAGADPGSKYEKARSLGTPIISEEEFIAWIQRDKT 668 >gi|194466912|ref|ZP_03072899.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23] gi|194453948|gb|EDX42845.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23] Length = 680 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 246/721 (34%), Positives = 396/721 (54%), Gaps = 56/721 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M ++Q P++ L++++A+ E+ L +++ YY+ P + D YD +R + Sbjct: 1 MSEKQ-TPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEE 59 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP L ++ P ++GG L KV H IP LS+ +++IE+L F R Q+ Sbjct: 60 QFPQLVSADSPT---QRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQR----QQE 112 Query: 121 KDDNSIF--FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 D + + LE KIDG +++ YE GK V + RG+G GEDV+A +R I ++P Sbjct: 113 NRDVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGAIGEDVTANVRTIKSVP--AE 170 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLN 237 L P IEVRGE Y+ K F LN + A G +ANPRNAA+G LR+L+P R L+ Sbjct: 171 LPEPLSIEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELD 230 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F++ + + ++ K Q E L +MR LGF VN + +T I Y E + R L Y Sbjct: 231 TFMYYVPEYQKLGVKTQAEALDRMRELGFNVNPNNQVVHTREEIEKYIEEYTAQRDKLTY 290 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 IDG+V KV++ + LG + PRW I++KF ++ +T + DI +GRTG +TP A Sbjct: 291 GIDGIVEKVNDLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAV 350 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 ++PV + G ++ A+LHN DY+ +DIR+GD V + +AG++IP++ + Sbjct: 351 MDPVQLAGTTVSRASLHNPDYLH-----------EKDIRIGDTVYLHKAGDIIPEISKVD 399 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R D+ + P+ CP+C S +V G++ A RC + C AQ E L HF S Sbjct: 400 LTKRPADSVEYEIPTKCPVCGSELVH----LDGEV--ALRCINPM-CPAQIKEGLAHFAS 452 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R+A NI+GLG + ++ + E I A ++ L Q + K FG+ S N Sbjct: 453 RNAMNIDGLGPRIIEQLWDKE----LIHDVAGLYRLNHDQLLTLDK------FGEKSTAN 502 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L SI+ RN S+ER +F LGIRHVGA+ AR + +++ ++++++ + D+ Sbjct: 503 LLTSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHF-------GDLDSLMKADADE--- 552 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLV 653 + + +G I ++IV ++ N + + ++ L+EV + R N SE +++V Sbjct: 553 ISAISGIGPTIGESIVTYFANQQVVKLIDE-LREVGVNFAYLGSRSNANPDSEWNGRRVV 611 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TG L ++ R +A+ ++ GA V+ +S+KTDI+I G + GSKL KAQ LG+ + NE+Q Sbjct: 612 LTGKLTEMTRGEAKSWLENHGAKVTGSVSKKTDIVIAGADAGSKLTKAQDLGIDVWNEQQ 671 Query: 714 F 714 F Sbjct: 672 F 672 >gi|21673293|ref|NP_661358.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS] gi|81791793|sp|Q8KF74|DNLJ_CHLTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21646383|gb|AAM71700.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS] Length = 674 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 235/722 (32%), Positives = 385/722 (53%), Gaps = 71/722 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A++E+ L EI H+ YY +KP I D E+D L +R + FP+L P+ P Sbjct: 5 KAQQEIGKLRAEIERHNRLYYLEAKPEISDFEFDKLLKRLIMLEKEFPELV---TPDSPS 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + V H P LSL ++I ++ F R+ + + + + E K D Sbjct: 62 QRVGGGITKEFPTVVHRDPMLSLSNTYSIAEVADFCNRVEKLVAAEGGGTPEYVAELKYD 121 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----------I 185 G I++ Y G V + RGDG G++++A +R IP+IP L L +P++ I Sbjct: 122 GVAISLLYRDGLLVCGSTRGDGRQGDEITANLRTIPSIP--LRLEMPDLPLFGTALSGEI 179 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 EVRGEVY+ K+DF LN+E R +ANPRNA +G L+ + ++ R FV K Sbjct: 180 EVRGEVYMRKDDFERLNEERPEEER--FANPRNATAGTLKLQDSAEVARRRMSFVAYYLK 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + A + L++++ +GF + I + E R TLPY+ DG+V K Sbjct: 238 GYDGEAPTHLKRLEQLKSMGFMTGAAAKLCKGMDEIADFIAEWSEKRWTLPYETDGVVLK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 ++E SL ++LG A+SPRW I++K+ +QA T L + Q+GR G +TPVA L+P + G Sbjct: 298 LNEVSLWERLGATAKSPRWAIAYKYPAQQAKTVLQGVVFQVGRLGTITPVAELKPTRLAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++++ +TLHN D IK L +R+GD V+++++GEVIPKVV ++++ER + Sbjct: 358 SIVSRSTLHNFDEIKRL-----------GVRIGDHVMIEKSGEVIPKVVSVVLDERPAET 406 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 PS CP+C +R+ R G++ C C AQ+ R+ HF SR+A +I+ Sbjct: 407 AEIEVPSECPVCGTRLER----PEGEV--NWYCPNEEGCPAQKRGRILHFASRNALDIQN 460 Query: 486 LGK----QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 LG+ Q +D S+ D+++L + Q ++ S N+ D+ Sbjct: 461 LGESLVTQLVDRGLVSD--------AGDLYSLTQEQLAGLDRM------AAKSAQNVLDA 506 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + K + S R +F+LGIRHVGA AR LA S + D +L V Sbjct: 507 LEKSKKQSYARLLFALGIRHVGAATARELAHACPSIDRLREM----------DEEALAAV 556 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS-----IGRHEKNVSSEIENKKLVFTG 656 P +G +IA +I +F+ P V+A+L++++ + G + V++ E + ++FTG Sbjct: 557 PDIGPVIAASIRDFFAKP----WVQAMLQKLAEAGLPMQAGEEKALVNNNFEGQSVIFTG 612 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L++ R +A+E V + G + + +S+KT +++ G GSKLEKA +LGVK+++E++F Sbjct: 613 ALERHVRQEAEEMVRERGGRIVSSVSKKTTLVVAGKEAGSKLEKAIKLGVKVIDEDEFER 672 Query: 717 LL 718 +L Sbjct: 673 ML 674 >gi|300704237|ref|YP_003745840.1| DNA ligase [Ralstonia solanacearum CFBP2957] gi|299071901|emb|CBJ43230.1| DNA ligase [Ralstonia solanacearum CFBP2957] Length = 813 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 231/636 (36%), Positives = 340/636 (53%), Gaps = 61/636 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY +P + D+EYD L R +A+ P L P+ P ++GG + V H +P Sbjct: 31 YYVLDQPSVPDAEYDRLYRELEALEAEHPAL---RTPDSPTLRVGGAVLPEFAPVRHVVP 87 Query: 95 TLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 LS+ E + F + R + D + + E K DG I +RYE+G V A Sbjct: 88 MLSIRTETDTTADGALAFDASVRRELGLAESDPPVEYAAELKFDGLAINLRYEQGFLVQA 147 Query: 152 ALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 A RGDG +GEDV+ IR I IP R + +P+++EVRGEVY+ ++DF LN Sbjct: 148 ATRGDGTTGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLNARQRER 207 Query: 209 GRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE--MLQKMRCLG 265 G K + NPRN A+G +R+L+P R L+FF +GLG+ + A + ML + LG Sbjct: 208 GEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSAMPETHSGMLDALVALG 267 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 FPV+ G+V ++ + + R +LP+DIDG+VYKV+ +LQ++LG R R PRW Sbjct: 268 FPVSRERAAVKGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNSLALQRELGFRTREPRWA 327 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++HK+ ++A T + I +Q+GRTG +TPVARL PV +GG +TNATLHNED ++ Sbjct: 328 VAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEVR----- 382 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPDAQPFSF 430 +D+RVGD V+V+RAG+VIP+VV +++ R P PF Sbjct: 383 ------RKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNAAQQPKHPPFEL 436 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S VVR+ G+ VA RC+GGL CSAQ+ E ++HF R +IEGLG++ Sbjct: 437 PKSCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERY 490 Query: 491 LDFFFKSE---DPAFSIRIPADIF-TLQRRQQTSTTKIENILGFGDVSVT---NLYDSIN 543 +D + E A R+ D F ++RR + G ++ NL I Sbjct: 491 IDNLVELEYVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAENLLAGIQ 550 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + L RF+F+LGIRHVG A++LA + S + + L+ +P Sbjct: 551 ASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPL----------LLTLPD 600 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639 VG +A+AI +F+ P+N A++ALL G H Sbjct: 601 VGATVAEAIADFFDEPKNQQALDALLAAGVAPQGEH 636 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 46/73 (63%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +V TGTL + R A+ + GA VS +S+KTD ++ G+ GSKL KA +LGV Sbjct: 734 LSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSKKTDYVVAGEEAGSKLAKAAELGV 793 Query: 707 KIMNEEQFLFLLQ 719 K+++E L LLQ Sbjct: 794 KVLDEAGMLALLQ 806 >gi|46199040|ref|YP_004707.1| NAD-dependent DNA ligase [Thermus thermophilus HB27] gi|81405933|sp|Q72JN8|DNLJ_THET2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|46196664|gb|AAS81080.1| NAD-dependent DNA ligase [Thermus thermophilus HB27] Length = 676 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 254/720 (35%), Positives = 398/720 (55%), Gaps = 67/720 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++E+ARK ++ L I YH+ YY + P I D+EYD L R + FP+L + P Sbjct: 1 MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEL---KSP 57 Query: 72 NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G + F+ V H SL+ +N ++L+ F RI R + + +T+ Sbjct: 58 DSPTEQVGARPLEATFRPVRHPTRMYSLDNAFNFDELKAFEERIERALGR--EGPFAYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE G VY A RGDG GE+V+ + IPTIPR L +PE +EVRGE Sbjct: 116 EHKVDGLSVNLYYEDGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLK-GVPERLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247 VY+ FL LN+E+ G + + NPRNAA+G LR+ +P + F+ GLG Sbjct: 175 VYMPVEAFLRLNEELEERGERIFKNPRNAAAGSLRQKDPRITAKRGLRATFYALGLG-LE 233 Query: 248 EIFAKG---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 E+ +G Q+ +L ++ GFPV +G +A G+ + Y + R LP++ DG+V Sbjct: 234 EVEREGVATQFALLHWLKEKGFPVEHGYARAVGAEGVEAVYQDWLKKRRALPFEADGVVV 293 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+DE +L ++LG AR+PR+ I++KF ++ TRLLD+ Q+GRTG +TPV LEPV + Sbjct: 294 KLDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGILEPVFLE 353 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ R + Sbjct: 354 GSEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGE 402 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P +P CP C R++ K GK+ HRC L C A++ E ++HF SR A +I+ Sbjct: 403 ERPIRWPETCPECGHRLL-----KEGKV---HRCPNPL-CPAKRFEAIRHFASRKAMDIQ 453 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDS 541 GLG++ ++ + ++ AD++ L++ E+++G G+ S NL Sbjct: 454 GLGEKLIERLLEK----GLVKDVADLYRLRK---------EDLVGLERMGEKSAQNLLRQ 500 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I + + LER +++LG+ VG +AR N A N+ L+ V Sbjct: 501 IEESKRRGLERLLYALGLPGVGEVLAR----------NLAARFGNMDRLLEASLEELLEV 550 Query: 602 PLVGDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 VG++ A+AI+E ++P R++ LKE + EK + ++ V TG L Sbjct: 551 EEVGELTARAILETLKDPAFRDLV---RRLKEAGVEMEAKEKGGEA-LKGLTFVITGELS 606 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R + + + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV + EE+ LL+ Sbjct: 607 R-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLE 665 >gi|193212122|ref|YP_001998075.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327] gi|254781284|sp|B3QLI5|DNLJ_CHLP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193085599|gb|ACF10875.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327] Length = 674 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 232/716 (32%), Positives = 379/716 (52%), Gaps = 59/716 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A++E+ L EI H+ YY +KP I D E+D L R A+ FP+L P+ P Sbjct: 5 KAQQEIGKLRAEIERHNRLYYLEAKPEISDFEFDKLLERLIALETEFPELV---TPDSPS 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + V H P LSL ++I ++ F TR+ + + + + E K D Sbjct: 62 QRVGGGITKEFPTVIHREPMLSLSNTYSIGEVSDFCTRVEKLVAAEGGGTPEYVAELKYD 121 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--------RVLSLNIPEIIEV 187 G I++ Y G V + RGDG G++++A ++ IP+IP + + +EV Sbjct: 122 GVAISLFYRDGLLVRGSTRGDGRQGDEITANLKTIPSIPLRLQSAGGSLFDAAVNGEVEV 181 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 RGEVY+ K+DF LN+E R +ANPRNA +G L+ + ++ R FV K Sbjct: 182 RGEVYMRKDDFERLNEERPEEER--FANPRNATAGTLKLQDSAEVARRRMSFVAYYLKGH 239 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A L++++C+GF R I ++ E R TLPY+ DG+V K++ Sbjct: 240 DGEAPTHLRRLEQLKCMGFMTGAAARLCKGMDEIANFIGEWSEKRWTLPYETDGVVLKLN 299 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E L +LG A+SPRW I++K+ +QA T L + Q+GR G +TPVA L+P + G+ Sbjct: 300 EVGLWDRLGATAKSPRWAIAYKYPAQQAKTVLQGVVFQVGRLGTITPVAELKPTKLAGST 359 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ +TLHN D I+ L +R+GD V+++++GEVIPKVV ++++ER + Sbjct: 360 VSRSTLHNFDEIERL-----------GVRIGDHVMIEKSGEVIPKVVSVVLDERPAETAE 408 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 PS CP+C +++ R G++ + C C AQ+ R+ HF SR+A +I+ LG Sbjct: 409 IEAPSECPVCGTKLER----HEGEV--SWYCPNEEGCPAQKRGRILHFASRNALDIQNLG 462 Query: 488 K----QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 + Q ++ F S+ D+++L + Q S ++ S N+ D++ Sbjct: 463 ESLVSQLVERGFVSD--------AGDLYSLTQEQLASLDRM------AAKSAQNVLDALE 508 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + S R +F+LGIRHVGA AR LA S I+ + ++ L VP Sbjct: 509 KSKKQSYARLLFALGIRHVGAATARELAHACPS-------IDRLREMGEEE---LAAVPD 558 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQ 662 +G +IA +I +F+ P +E L P EK V++ E + ++FTG L++ Sbjct: 559 IGPVIAASIRDFFAKPWVAAMLEKLAAAGLPMQAGEEKALVNTNFEGQSVIFTGGLERHV 618 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+E V + G + + +S+KT +++ G GSKLEKA +LGV++++E++F +L Sbjct: 619 RQQAEEMVRERGGKIVSSVSKKTTLVVAGKEAGSKLEKAMKLGVRVIDEDEFERML 674 >gi|161598439|ref|YP_120478.2| NAD-dependent DNA ligase LigA [Nocardia farcinica IFM 10152] Length = 710 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 238/706 (33%), Positives = 368/706 (52%), Gaps = 50/706 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +E+ H YY PII D E+DAL R + PDL P+ P +GG Sbjct: 33 LAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDL---RTPDSPTQLVGGGFA 89 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 V H LSL+ ++++++LR + R+ + + + + E KIDG + + Y Sbjct: 90 TDFTPVDHLERMLSLDNVFDVDELRAWAARV----EAETGPDLHYLCEVKIDGVALNLVY 145 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKNDFL 199 E+GK V AA RGDG +GEDV+ R I +P LS +PE++EVRGEVY+ DF Sbjct: 146 ERGKLVRAATRGDGRTGEDVTLNARTIEDVPGELSAGGEFPVPELLEVRGEVYLRLADFE 205 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 ALN ++A G+ PYANPRN A+G LR+ +P R L HGLG+ Q+E Sbjct: 206 ALNAAIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRMICHGLGRIEGYTPASQFEAY 265 Query: 259 QKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + + G PV+ R+ + V+Y+ E R + ++IDG V KVDE SLQ++L Sbjct: 266 RALSAWGLPVSEHTRRVRGIDAVIERVAYWGEH---RHDIEHEIDGQVIKVDETSLQRRL 322 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I++K+ ++A+T+L I++ +GRTG +TP A +EPV I G+ + ATLHN Sbjct: 323 GATSRAPRWAIAYKYPPEEATTKLRAIEVNVGRTGRVTPFAVMEPVVIAGSTVAMATLHN 382 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 +K R G + +GD V +++AG+VIP+V+ +V+ R + F P+ CP Sbjct: 383 ASEVK---------RKG--VLIGDTVTIRKAGDVIPEVLGPVVDARTGAEREFVMPTHCP 431 Query: 436 ICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 C + +L P K G A RC +C AQ ER+ H R AF+IE LG + Sbjct: 432 ECGT----ELAPEKEGD--ADIRCPNQRSCPAQLRERVYHVAGRSAFDIEALGYEAAIDL 485 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 +S +I D+F L + +T+ N G + L ++++ ++ L R + Sbjct: 486 LQS----GAIGDEGDLFDLDEARLLTTSLFTNKNGSLSANGKRLLENLDAAKDRPLWRVL 541 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 L IRHVG AR+LA + S + Q + +A + VG IA A+ E Sbjct: 542 VGLSIRHVGPTAARALAAEFGSMERIEQASVDELAATDG----------VGPTIAAAVAE 591 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++ + V + ++++ +E +V TG+LQ R A+E + G Sbjct: 592 WFTVDWHRAIVAKWRAAGVRMVDERDESIERTLEGLSIVVTGSLQGFSRDGAKEAILARG 651 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +S+KT ++VGD PG+K KA++LGV I++EE F+ LL + Sbjct: 652 GKAAGSVSKKTAFVVVGDAPGAKAAKAEELGVPILDEEGFVRLLAE 697 >gi|116626792|ref|YP_828948.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus Ellin6076] gi|122251346|sp|Q01NV7|DNLJ_SOLUE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116229954|gb|ABJ88663.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus Ellin6076] Length = 662 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 236/704 (33%), Positives = 370/704 (52%), Gaps = 54/704 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ L +++ +H+ YY KP I D+EYDAL R + PDL P+ P ++G Sbjct: 7 EIEKLREQLHHHEHLYYVLDKPEITDAEYDALMHRLQELETKHPDLL---TPDSPTQRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G+ KV HS P LSL+ N +LR F R+ + + E K+DG + Sbjct: 64 GKPREGFIKVRHSSPMLSLDNALNEAELRDFDRRVRDLLGGA---AFRYVTELKMDGLSM 120 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 Y GKF A RGDG +GEDV+ R I ++P + +P EVRGE +S+ F Sbjct: 121 AAHYNNGKFTEAVTRGDGTTGEDVTENARTIRSLPLRVKTKLP-AFEVRGETVMSRRAFE 179 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN + G +ANPRNAA+G LR+L P +R L ++ + L + +E L Sbjct: 180 RLNTDRDEKGLSRFANPRNAAAGSLRQLEPQVTASRRLEYYTYFLLTEGRPAYESHWEAL 239 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ +GF VN+ R ++ ++++ + R LPY+IDG+V KVD Q++LG Sbjct: 240 TALKQMGFKVNDKSRPCDSIDEVLAFCAHWEGERENLPYEIDGVVVKVDSVEQQRRLGFT 299 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A++PRW I++K+ +QA+T + ID+Q+GRTG LTPVA L+PV +GG ++ ATLHNED Sbjct: 300 AKAPRWAIAYKYPARQATTMIEGIDVQVGRTGALTPVANLKPVVVGGVTVSRATLHNEDE 359 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I+ L +++GD V+V+R+G+VIPKVV V+ + +PF PS CP+C Sbjct: 360 IERL-----------GLQIGDEVVVERSGDVIPKVVR--VSSQGSYRKPFKMPSHCPVCN 406 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +++VR+ AA RC C A+ E + HF SR NI+G+G +D E Sbjct: 407 TKIVREEGE------AASRCINA-NCPARLKESILHFASRGVMNIDGMGDALVDQLVDRE 459 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERFIF 555 + AD++ L KIE+++ G S N+ +I+K R SL R + Sbjct: 460 ----IVHNIADLYDL---------KIEDLMDLDRMGVKSAGNVIRNIDKSRRNSLPRVLT 506 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A LA+ + S + + + + VG +A+A+V+F Sbjct: 507 ALGIRFVGERTAVFLAQAFGSMDAIERATVDELQQAEE----------VGPKVAEAVVQF 556 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + P N V+ L K + + + V TGTL + R +A++ + Q G Sbjct: 557 FSIPDNRELVDRLRKADLQFTYAYSRPKGGPLTGSTFVLTGTLPNLSREEAKQLIEQAGG 616 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V++ +S+KT ++ G++ GSKL+KA QL ++++ E + +L+ Sbjct: 617 KVASAVSKKTSYVVAGEDAGSKLDKAHQLNIRVITEAELHAMLR 660 >gi|81429164|ref|YP_396165.1| NAD-dependent DNA ligase [Lactobacillus sakei subsp. sakei 23K] gi|123755813|sp|Q38VC5|DNLJ_LACSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78610807|emb|CAI55858.1| NAD-dependent DNA ligase [Lactobacillus sakei subsp. sakei 23K] Length = 677 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 236/713 (33%), Positives = 385/713 (53%), Gaps = 61/713 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E + +A L +++ + YY P++ D YD L R + + AFP + + Sbjct: 7 VEDYTQSEAASLAQQLRDQLADYSQAYYTQDAPLVEDHVYDELYRDLEQLEAAFPVIVTN 66 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P K+GG++ KVTH IP LS+ +++ +L F R+ +K I + Sbjct: 67 DSPT---QKVGGQVLPGFTKVTHEIPMLSMGDVFSEAELAAFDQRL----RKNTATEIEY 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG I + YEKG+FV A RG+G GED++ ++ I IP+ L+ P IEVR Sbjct: 120 NVELKIDGLAIDLIYEKGRFVRGATRGNGTIGEDITQNLKTIKAIPQKLTR--PVSIEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GE Y+ K F LN + A G+ P+ANPRNAA+G LR+L+ R L+ F++ + Sbjct: 178 GECYMPKAAFADLNQKREAEGQAPFANPRNAAAGSLRQLDAKVAAARQLSAFIYTIVTFD 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ A Q E L + LGF VN + ++ + + R+ L Y IDG+V KV+ Sbjct: 238 DVQATTQSEALHVLAELGFNVNPTSVVCQNMAEVQAFIEQYQGTRNDLAYGIDGVVLKVN 297 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ+QLG + PRW I++KF ++A T + +I+ +GRTG++TP A ++PV + G Sbjct: 298 DLALQRQLGNTVKVPRWEIAYKFPPEEAETVIREIEWTVGRTGVVTPTAVMDPVQLAGTT 357 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+LHN D ++ +D+R+ D VL+ +AG++IP++ +++ +R D+Q Sbjct: 358 VARASLHNADMLR-----------DKDVRLLDTVLLHKAGDIIPEISQVVLAKRPSDSQA 406 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P+ CP C +V L+ + A RC + C AQ E+L HF SR+A NI+GLG Sbjct: 407 YGIPTTCPSCGHDLVH-LDEEV-----ALRCINPM-CPAQMKEQLTHFASRNAMNIDGLG 459 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + + E I AD++ L + + + F + S+ NL ++I+ R Sbjct: 460 PRIITQLLEKE----LIHDVADLYRL------TADDLAQLDKFKEKSINNLLNAIDASRQ 509 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SLER +F LGIRHVGA+ AR LA+++ N+ A D ++I V +G I Sbjct: 510 NSLERLLFGLGIRHVGAKAARLLAEHF----------QNLAALMASDQETIITVDTIGTI 559 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP--------SIGRHEKNVS-SEIENKKLVFTGTL 658 IA ++V ++ + + V+ L+ E+ + + + S S K +V TG L Sbjct: 560 IADSLVTYFADSQ----VQTLMAELEAVGVNLTYTGVTKAQAATSDSYFNGKTVVLTGKL 615 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 ++ R + ++ + GA V+ +S+KTD +I G + GSKLEKAQ L + I+NE Sbjct: 616 EQYTRGELKQLLEDNGAKVTGSVSKKTDALIAGQDAGSKLEKAQSLAIPIINE 668 >gi|104780921|ref|YP_607419.1| NAD-dependent DNA ligase LigA [Pseudomonas entomophila L48] gi|122985912|sp|Q1ICK0|DNLJ_PSEE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|95109908|emb|CAK14613.1| NAD-dependent DNA ligase [Pseudomonas entomophila L48] Length = 784 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 217/627 (34%), Positives = 348/627 (55%), Gaps = 48/627 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + +L E+ H+ YY +P + D+EYD L A+ P L ++ P Sbjct: 3 AESRIHALRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPQLVTADSPT---Q 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTL 130 ++GG + +V H +P LSL + +DLR F R+ + ++ ++ Sbjct: 60 RVGGAALAAFSQVRHEVPMLSLGNAFEEDDLRDFDRRVVEGLDLPGGDLFAAQAAVDYSC 119 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189 EPK+DG +++ Y G+ V A RGDG +GED+S +R + IP ++ P ++EVRG Sbjct: 120 EPKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISTNVRTVRNIPLKLQGEGWPAVLEVRG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVY+SK F LN G K +ANPRNAA+G LR+L+ +R L F +G+G+ SE Sbjct: 180 EVYMSKAGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSE 239 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 F +L+K++ G P++ +R A ++YY ++ + R+ LPY+IDG+V+KV+ Sbjct: 240 PFGDSHIGILEKLKTWGLPISRELRHAAGIEECLAYYRDIGARRNDLPYEIDGVVFKVNS 299 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q++LG RAR PRW I+HKF + T +LD++ Q+GRTG +TPVARL+PV + G ++ Sbjct: 300 LASQRELGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVMV 359 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L +R+GD V+++RAG+VIP+V+ ++++ R +A+P Sbjct: 360 SNATLHNMDEIARL-----------GLRIGDTVIIRRAGDVIPQVMQVVLDRRPENARPV 408 Query: 429 SFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P+ CP+C S+V R + GK A +RC G L+C+AQ + + H+VSR A + Sbjct: 409 EVPTECPVCGSQVERTQLVKRSKGKETISEGAVYRCVGRLSCAAQLKQAIIHYVSRRAMD 468 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLG++ ++ D IR PAD++ L+ Q + + GF +VS L ++I Sbjct: 469 IDGLGEKSVEQLV---DEGL-IRSPADLYKLEFEQ------VVVLEGFAEVSSRKLLEAI 518 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + SL RFI++LGI VG E A+ LA+ S + ++ + +P Sbjct: 519 EASKRPSLARFIYALGIPDVGEETAKVLARSLGSLARVQVALPQVLTY----------LP 568 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALL 629 +G +A I F+++ N + LL Sbjct: 569 DIGLEVAHEIHNFFEDTHNREVIAQLL 595 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 4/121 (3%) Query: 609 AQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664 A+ + EF+++ N A+EA L + +++ + + V TGTL+++ R Sbjct: 664 AEGVREFFRDEANQLLARAIEAQLLDFGMHWSCEKRSAEGLPLAGQTWVLTGTLERMSRD 723 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 A+E + +LGA V+ +S KT ++ G GSKL KA +LGVK+++EEQF+ + + T Sbjct: 724 VAKEQLERLGAKVAGSVSGKTHCVVAGPGAGSKLAKANELGVKVLDEEQFVAFMAEQGIT 783 Query: 725 L 725 L Sbjct: 784 L 784 >gi|81373659|sp|Q5YRS7|DNLJ2_NOCFA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|54017744|dbj|BAD59114.1| putative DNA ligase [Nocardia farcinica IFM 10152] Length = 683 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 238/706 (33%), Positives = 368/706 (52%), Gaps = 50/706 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +E+ H YY PII D E+DAL R + PDL P+ P +GG Sbjct: 6 LAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDL---RTPDSPTQLVGGGFA 62 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 V H LSL+ ++++++LR + R+ + + + + E KIDG + + Y Sbjct: 63 TDFTPVDHLERMLSLDNVFDVDELRAWAARV----EAETGPDLHYLCEVKIDGVALNLVY 118 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKNDFL 199 E+GK V AA RGDG +GEDV+ R I +P LS +PE++EVRGEVY+ DF Sbjct: 119 ERGKLVRAATRGDGRTGEDVTLNARTIEDVPGELSAGGEFPVPELLEVRGEVYLRLADFE 178 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 ALN ++A G+ PYANPRN A+G LR+ +P R L HGLG+ Q+E Sbjct: 179 ALNAAIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRMICHGLGRIEGYTPASQFEAY 238 Query: 259 QKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + + G PV+ R+ + V+Y+ E R + ++IDG V KVDE SLQ++L Sbjct: 239 RALSAWGLPVSEHTRRVRGIDAVIERVAYWGEH---RHDIEHEIDGQVIKVDETSLQRRL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I++K+ ++A+T+L I++ +GRTG +TP A +EPV I G+ + ATLHN Sbjct: 296 GATSRAPRWAIAYKYPPEEATTKLRAIEVNVGRTGRVTPFAVMEPVVIAGSTVAMATLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 +K R G + +GD V +++AG+VIP+V+ +V+ R + F P+ CP Sbjct: 356 ASEVK---------RKG--VLIGDTVTIRKAGDVIPEVLGPVVDARTGAEREFVMPTHCP 404 Query: 436 ICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 C + +L P K G A RC +C AQ ER+ H R AF+IE LG + Sbjct: 405 ECGT----ELAPEKEGD--ADIRCPNQRSCPAQLRERVYHVAGRSAFDIEALGYEAAIDL 458 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 +S +I D+F L + +T+ N G + L ++++ ++ L R + Sbjct: 459 LQS----GAIGDEGDLFDLDEARLLTTSLFTNKNGSLSANGKRLLENLDAAKDRPLWRVL 514 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 L IRHVG AR+LA + S + Q + +A + VG IA A+ E Sbjct: 515 VGLSIRHVGPTAARALAAEFGSMERIEQASVDELAATDG----------VGPTIAAAVAE 564 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++ + V + ++++ +E +V TG+LQ R A+E + G Sbjct: 565 WFTVDWHRAIVAKWRAAGVRMVDERDESIERTLEGLSIVVTGSLQGFSRDGAKEAILARG 624 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +S+KT ++VGD PG+K KA++LGV I++EE F+ LL + Sbjct: 625 GKAAGSVSKKTAFVVVGDAPGAKAAKAEELGVPILDEEGFVRLLAE 670 >gi|218885555|ref|YP_002434876.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|254781315|sp|B8DJT6|DNLJ_DESVM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218756509|gb|ACL07408.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 808 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 247/733 (33%), Positives = 386/733 (52%), Gaps = 86/733 (11%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 +L +++YH YY I D+EYDAL R I +P L P+ P +++G + Sbjct: 39 ALRDQLNYHSHRYYVLDDAEISDAEYDALFRELQDIEAEWPSL---RTPDSPTHRVGDTV 95 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 +L H++ SL+ ++ E+ FI R+ R + D F +PK+DG + + Sbjct: 96 VAALETQAHTLRMYSLDNAFSAEEWDGFIQRMLR---AEPDAPTAFWCDPKMDGLALEVI 152 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVYISKNDFLA 200 YE G F A RGDG GE V+ +R + +P L P +EVRGEV I++ +F A Sbjct: 153 YENGVFTTALTRGDGEKGEIVTTAMRTVRNLPLRLHGEGPHPARLEVRGEVVITRAEFDA 212 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK------TSEIFAKG 253 LN G K +ANPRNAA+G +R+L+ + R L F +G+G+ TS+ A Sbjct: 213 LNAARRGAGEKLFANPRNAAAGSVRQLDASVTAGRPLRFLAYGVGQVVWPAETSDGAASA 272 Query: 254 ----------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 +++ + GF R+ T +++YY ++ RS LP+DIDG+V Sbjct: 273 AQGPEARWATHGQVMAALADYGFGTPPDARRCETPAQVMAYYEDLGRRRSELPFDIDGVV 332 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+D+ S Q LG AR+PRW I+ KF QA+TRL I IQ+GRTG+LTPVA L PV + Sbjct: 333 AKLDDLSAQAALGYTARAPRWAIALKFPAHQATTRLEHIAIQVGRTGVLTPVAELAPVAV 392 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++ ATLHNED I+ +D+RVGD V+V+RAG+VIP+VV +V++R Sbjct: 393 GGVTVSRATLHNEDEIR-----------AKDLRVGDMVVVQRAGDVIPEVVRPLVDQRPA 441 Query: 424 DAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P F FP+ CP+C + V R+ AA RC + C A + + HFVS+ + Sbjct: 442 SGLPEFEFPAECPVCHTPVRREPG------EAAWRCV-NVGCPAVVRQSIIHFVSKAGLD 494 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR-----QQTSTTKIENILGFGDVSVTN 537 I+G+G++ ++ + PAD+F L ++ ++ EN + D + Sbjct: 495 IQGVGRRWVELLVDR----GKVTSPADLFGLDKQTLLAFERMGPKLAENFIAAFDTA--- 547 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 R +L R I +LGIRHVG + AR+LA ++ +++ + A + + Sbjct: 548 -------RTGATLNRLICALGIRHVGEQTARTLAAHF-------ADLDALGAAQAE---T 590 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNV-------SSE 646 L ++P +G +A +I F+ N N +E L L V P R E + S Sbjct: 591 LQQLPDIGPEVAASIRAFFANEGNRALLERLRGVGLWPVRPV--RPEADAAGAPGEGSGP 648 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + +++FTG+L + R A+ GA + +S+K D+++VGD PGSKL+KA +LG+ Sbjct: 649 LAGLRVLFTGSLTTLTRSDAERRAVAAGANILGSVSKKLDLLVVGDKPGSKLDKATKLGI 708 Query: 707 KIMNEEQFLFLLQ 719 +++ E++FL LL+ Sbjct: 709 RVLREQEFLDLLE 721 >gi|257125939|ref|YP_003164053.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b] gi|257049878|gb|ACV39062.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b] Length = 706 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 237/724 (32%), Positives = 391/724 (54%), Gaps = 51/724 (7%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 KK+ + + ++ + +++ L EI YH++ YY PII D EYDAL R + Sbjct: 11 KKQNINNEKNINFSKIQEKYKKLRNEIEYHNNLYYNEDNPIISDMEYDALMRELKQLEQE 70 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---- 117 +P+L + + N P KIGG + KV H P LSL +NI ++ F R+ + Sbjct: 71 YPELLENSE-NSPTKKIGGTASEKFSKVRHRTPMLSLSNTYNISEIEDFDKRVKKIILSQ 129 Query: 118 --WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175 K +D ++ + LE K+DG I++ YE G+ V A RGDG GEDV+ IR I +IP+ Sbjct: 130 IDENKNNDENLEYILELKLDGLSISLIYENGELVQAVTRGDGQIGEDVTENIREISSIPK 189 Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-R 234 L P +EVRGE+ + ++F +N E G +ANPRNAASG +R+L+ T + R Sbjct: 190 --KLKDPVSLEVRGEIILPISNFNRINQEREDDGEDVFANPRNAASGTIRQLDKTIVADR 247 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L+ +++ L E ++ ++ LGF + F + ++ R T Sbjct: 248 GLDCYLYYLVNAENYGINTHLESIEYIKNLGFQTTGVFEKYTDFTELEKSIDKWHDKRKT 307 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L Y+ DGLV KV+ F+L + LG +SPRW I++KF +Q T+L D+ Q+GRTG++TP Sbjct: 308 LDYETDGLVIKVNNFALYETLGYTTKSPRWAIAYKFPAEQVKTKLTDVTFQVGRTGVITP 367 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA LE VN+ G+++ A+LHN D I+ +DI++GD V+V++A E+IP+VV Sbjct: 368 VAELEAVNLSGSVVKRASLHNFDEIR-----------RKDIKIGDNVIVEKAAEIIPQVV 416 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 +++ ++R P+ CP+C S +L+ + G + A +C L C + ++ + Sbjct: 417 NVVFDDRTGKEIEIQEPTNCPVCNS----ELSHEEG--LVALKCHNPL-CPEKVKRQIAY 469 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 FVSRDA NI GLG + ++ F + I+ DI++L++ ++ ++EN+ G S Sbjct: 470 FVSRDAMNISGLGDKIVEKFIE----LGKIKTIVDIYSLEKYRE----ELENLEKMGQKS 521 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-QEINNIIAHNND 593 V NL +SI + + +++LGI VG A L K + + +N Q I N++A Sbjct: 522 VDNLINSIESSKTRDFSKVLYALGIPFVGKFNANLLTKTFKNIENLKNQSIENLLA---- 577 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEKNVSSEIENK 650 V +GD +A A+ F + N I ++ + + + EK + I++K Sbjct: 578 -------VKGIGDKVAVAVNTFLNDENNWKIITDLQNIGLQFAIDETNLEKIADNPIKDK 630 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 + TG LQK +R+ ++ + G +++S+ D +I G+ GSKLEKA++LG++++ Sbjct: 631 NFLATGKLQKYKRNDIKDIILSKGGNYLSVVSKNLDFLIAGEKAGSKLEKAEKLGIRVLT 690 Query: 711 EEQF 714 EE F Sbjct: 691 EEDF 694 >gi|222151884|ref|YP_002561044.1| DNA ligase [Macrococcus caseolyticus JCSC5402] gi|254781362|sp|B9E830|DNLJ_MACCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222121013|dbj|BAH18348.1| DNA ligase [Macrococcus caseolyticus JCSC5402] Length = 663 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 245/715 (34%), Positives = 386/715 (53%), Gaps = 60/715 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IEQ EL L + +Y Y+ P + DSEYD L I P+L +++D Sbjct: 1 MNIEQRVTELHQLLHQYNYE---YHVQDNPSVPDSEYDKLLHELIDIEREHPEL-KTDD- 55 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++GG + KV H P LSL ++ EDL F R+ K + + + +E Sbjct: 56 -SPTVRVGGTPVSAFEKVDHDTPMLSLGNAFSEEDLLAFDKRV-----KDEVGEVEYMVE 109 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG ++++Y G FV RGDG +GE+++ ++ I IP L+L++P EVRGE Sbjct: 110 LKIDGLAVSLKYVDGVFVQGLTRGDGTTGENITQNLKTIHAIP--LTLSVPLTFEVRGEA 167 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ + FLALN VG ANPRNAA+G LR+L+ R L+ F++ + E+ Sbjct: 168 YMPRKSFLALNAYREKVGEPLAANPRNAAAGSLRQLDSKLTAKRKLDIFLYSVNDLRELN 227 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A+ Q E L K+ +GF N+ + + Y R+ L YDIDG+V KV++ S Sbjct: 228 AQSQSEALDKLDEIGFKTNHERKLCRNMEEVFEYIKYWTEKRNDLAYDIDGIVIKVNDLS 287 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG A+SP+W I++KF ++ T L DI++ IGRTG++TP A LEPV + G + Sbjct: 288 KQDELGFTAKSPKWAIAYKFPAEEVITTLNDIELSIGRTGVVTPTAILEPVKVAGTTVGR 347 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ +DIR+GD V++++AGE+IP+VV ++++ R +P++ Sbjct: 348 ASLHNEDLIR-----------EKDIRIGDSVVIRKAGEIIPEVVRVVLDRRPEGTKPYNM 396 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C +VR G++ A RC C A+ +E + HFVSR A NI+GLG++ Sbjct: 397 PEICPSCGHELVR----IEGEV--ALRCINP-KCDAKLVEGVIHFVSRTAMNIDGLGERI 449 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + I AD++TL+R + + ++ G+ V L +I + SL Sbjct: 450 VEVLYNED----IINDVADLYTLERERLLTLERM------GEKKVDKLLAAIEASKTNSL 499 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRH+GA+ + LA+ + + N N +L ++ +G+ +AQ Sbjct: 500 ERLLFGLGIRHLGAKASMVLAREFGTMDNL----------KNATVETLTQIDDIGEKMAQ 549 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE------NKKLVFTGTLQKIQRH 664 ++V + QN I +E L E R+ +IE K +V TG L + R Sbjct: 550 SLVTYLQNEDIINLLEKL--EQYGVNMRYTGVTKDDIELHPVFGEKTIVLTGKLTIMSRS 607 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A + +T LGA V+ +++KTDI+I G + GSK EKA LG+ + E+ + L+ Sbjct: 608 EATKALTNLGAKVTNSVTKKTDIVIAGSDAGSKREKADSLGIPVWTEQMMVDALR 662 >gi|220904693|ref|YP_002480005.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254781312|sp|B8J0Q0|DNLJ_DESDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219868992|gb|ACL49327.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 712 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 246/728 (33%), Positives = 386/728 (53%), Gaps = 68/728 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+ + L E+ H+ Y+ +P I D ++DAL R + +P+L + P Sbjct: 24 EERRRVQWLTAELERHNHLYHTLDRPEISDDQFDALFRELQDLETRWPEL---RSLHSPT 80 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI--FFTLEPK 133 ++GG + L K HS+ L+ +++ ++F R+ R W + + F +PK Sbjct: 81 LRVGGGLLEGLAKKAHSLQMYGLDNVFSAGQWQEFAERMARAWGGDVNGPLPESFWCDPK 140 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEV 191 +DG + I Y G A RGDG GE V+ +R I T+P L+ P +EVRGEV Sbjct: 141 LDGLALEIIYADGVLQEALTRGDGEVGEVVTDAVRTIRTVPLRLAGPGPFPARLEVRGEV 200 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK---TS 247 + KNDF LN++ A+G K +ANPRNAA+G LR+L+ I +R L F + LG+ T Sbjct: 201 VMYKNDFAVLNEKQEALGLKTFANPRNAAAGTLRQLDTAIIGSRPLRFLAYSLGQALWTP 260 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 Q E++ ++R GF R ++ + Y ++ R+ P +IDG V K+D Sbjct: 261 APVCLLQSEVMSRLREYGFLTPPDGRLCSSVAEVEEYAQWVREHRAAFPMEIDGAVAKLD 320 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q+ LG AR+PR+ ++ KF + A T L DI+IQ+GRTG+LTPVA LEPV++GG + Sbjct: 321 NLEAQQALGFTARAPRFAVAFKFPAELAQTLLKDIEIQVGRTGVLTPVAMLEPVSVGGVM 380 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNED I+ RD+RVGD V+V+RAG+VIP+VV ++ +R +A+ Sbjct: 381 VSRATLHNEDEIR-----------NRDVRVGDTVMVRRAGDVIPEVVGPVLEKRPENARE 429 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + FP CP C R+ AA RC +ACSA +L + HFVS+ +I G+G Sbjct: 430 YVFPHTCPACGQPAYREEGE------AAWRCE-NMACSAIRLRAITHFVSKAGLDIAGVG 482 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINK 544 ++ ++ S ++ PAD+FTL ++ +LGF G+V D++ + Sbjct: 483 QKWIEQLVTSG----RVQSPADLFTL---------TVQELLGFERMGEVLAHKFVDALAR 529 Query: 545 R-RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +L R I +LGIRHVG + AR+LA ++ + E+ N A +L+ +P Sbjct: 530 AVHSATLPRLISALGIRHVGEQTARTLALHFETL----DELENAGAE------TLLSLPD 579 Query: 604 VGDIIAQAIVEFYQNPRNICAVE-----------ALLKEVSPSIGRHEKNVSSEIENKKL 652 VG +A +I F+ +P N +E S S + K + Sbjct: 580 VGPEVASSIHNFFNSPANREQLERFRALGLWPRGGRSGGGSSGSTGEGGLASGPLAGKNI 639 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 +FTGTL + R +A++ GA +S+K D ++ G+ GSKLEKAQ LGV ++ EE Sbjct: 640 LFTGTL-SMPRSEAEKLAETAGATPLGGVSKKLDYLVAGEKAGSKLEKAQALGVTVLTEE 698 Query: 713 QFLFLLQQ 720 +F+ +L++ Sbjct: 699 EFMTMLRE 706 >gi|332519658|ref|ZP_08396122.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4] gi|332044217|gb|EGI80411.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4] Length = 665 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 232/706 (32%), Positives = 381/706 (53%), Gaps = 51/706 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E+ L QE+ H+ YY P I D ++D + A+ A P+ D N P + Sbjct: 4 KQEIEQLRQELREHNYNYYVLDNPTISDYDFDIKLKELQALEEAHPEFF---DANSPTLR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ + V H SL+ +++EDL+ + TRI + D I +T E K DG Sbjct: 61 VGGEVTKNFNTVVHEHRMYSLDNSYSLEDLKDWETRIKKLV----DGDISYTCELKYDGA 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G + A RGDG G++V+A I+ I ++P L + P ++RGE+ + Sbjct: 117 SISLTYENGNLLKAVTRGDGFQGDEVTANIKTIKSVPLQLKGDYPAKFDIRGEIVLPFKG 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 FL +N+E +A G +PY NPRN ASG L+ + ++ R L ++ L T+ + + Q+E Sbjct: 177 FLKMNEERVANGEEPYKNPRNTASGSLKLQDSGEVAKRPLECLLYNLTGTN-LGVENQFE 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K R +GF V N R T + + N + R LPY+ DG+V KV+ Q++LG Sbjct: 236 SLEKARKMGFKVPNEARLCKTIDEVFKFINHWDTERHNLPYETDGVVVKVNSLYQQEELG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW +++KF +Q ST L +I Q+GRTG +TPVA LEPV++ G ++ A+LHN Sbjct: 296 YTSKAPRWAMAYKFKAEQVSTILKEITYQVGRTGAITPVANLEPVDLAGTVVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIR+ D V V++ GE+IPK++ + + +R D++P + + CP Sbjct: 356 DQIEKL-----------DIRINDTVFVEKGGEIIPKIIAVDLTQRLQDSKPTKYATHCPE 404 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQ+ + R G+ A H C C Q + R++HF+SR A +IEGLG + + K Sbjct: 405 CQTPLER----LEGE--AKHFCPNYNGCEPQVIGRIQHFISRKAMDIEGLGGETVGLLVK 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I AD++TL + Q ++ + S NL + I + IS ER +F+ Sbjct: 459 E----GLITNYADLYTLTKAQILPLERM------AEKSAENLINGIEASKQISFERVLFA 508 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 +GIR VG +A+ LAK+Y S + Q A D L +V +G IA+++V F+ Sbjct: 509 IGIRFVGETVAKKLAKHYKSIEALEQ------ASIED----LEKVDEIGIKIAESVVSFF 558 Query: 617 QNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + N ++ LK V + N +++++ K V +G K+ R++ ++ + Sbjct: 559 ASEENRNIIKR-LKNVGVQLEISAEKLANQTNKLKGKSFVVSGVFTKVSRNELKKLIEDN 617 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G + +S KTD ++ GD G SK EKA++L + ++ E++FL ++ Sbjct: 618 GGKNVSSISSKTDFVVAGDKMGPSKKEKAEKLNISLITEDEFLQMV 663 >gi|297621454|ref|YP_003709591.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044] gi|297376755|gb|ADI38585.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044] Length = 665 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 230/704 (32%), Positives = 381/704 (54%), Gaps = 46/704 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +L +E+ H+ YY P+I D E+D L + + I P+ DPN P + Sbjct: 3 KENYEALCKEVWEHNKRYYIDHAPLINDEEFDLLLKELEEIEKMHPEWI---DPNSPTQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + H P LSL ++ E++ +FI R+ + K+ + F+ E K+DG Sbjct: 60 VGEMLTEGFPTALHQTPMLSLANTYSKEEVDEFIKRMEKLAGHKE---MAFSCELKMDGI 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 + + YE+G FV A RGDG G+D+SA ++ IP++P +++ IEVRGEVY+ N Sbjct: 117 AVAVTYEQGGFVRAVTRGDGKKGDDISANLKTIPSLPLKLIDGKTLNRIEVRGEVYMPVN 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F LN +ANPRNAA G L+ L+P R L +G+ + QY Sbjct: 177 AFETLNKTRKESNEALFANPRNAAGGSLKLLDPKATAQRSLAVVFYGISDPESLGLHSQY 236 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++ + LG P RQ + I ++ E++ R TL Y IDG+V K+D+ + QK+L Sbjct: 237 DVHGFLGSLGLPTLEYRRQCFSREEIWNFVEEVRKKRETLSYQIDGIVIKLDDLAQQKRL 296 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G + PRW +++KFA +Q TR+ DI +Q+GRTG++TPVA LEPV + G+ I+ ATLHN Sbjct: 297 GSTGKQPRWAVAYKFAAEQTETRIRDIIVQVGRTGVITPVAELEPVLLAGSTISRATLHN 356 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 E+ ++ +D+R+GD L+++ G+VIPKV+ I +R + P+ P CP Sbjct: 357 EEEVE-----------RKDVRIGDSALIEKGGDVIPKVISINPEKRREGSMPWKMPDVCP 405 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C +VR G++ A RC C Q L R+ +FVS++A I+ LG++ + Sbjct: 406 SCGHPLVR----VEGEV--AVRCPNREGCPEQLLRRIAYFVSKEAMEIDHLGEKVVKQLI 459 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + ++ P+DI+TL + Q + N+ GF + + L I +++S RFI Sbjct: 460 R----IGYVKRPSDIYTLTKEQ------LLNLEGFKEKAAERLKQGIENSKHVSFSRFIM 509 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGI++VGA A LA N + +I+ + + L+++ +G+ A++++E+ Sbjct: 510 ALGIKYVGAGTAELLA-------NRSGDIDGL---KQLSYEELLKINGIGEKAAESVIEY 559 Query: 616 YQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + + N+ +E L K V P + + NK V TGTL+ R A + + G Sbjct: 560 FSDAENLKEIERLKKFGVCPQKVERKTFIGHPFNNKTFVLTGTLENYTRTAAASLIKERG 619 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V+ +S+KTD ++ G++PGSKLEKA+ LG++++ E +F+ ++ Sbjct: 620 GKVTGSVSKKTDYLLAGESPGSKLEKAESLGIQVLTESEFVKMI 663 >gi|325570045|ref|ZP_08145970.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC 12755] gi|325156873|gb|EGC69044.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC 12755] Length = 687 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 250/731 (34%), Positives = 395/731 (54%), Gaps = 66/731 (9%) Query: 1 MKKRQLIPIEALSIE-QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 +K ++ I ++ S E Q+R E L +++ + YY +P + D YD L I Sbjct: 4 LKNKEDIRMDVPSKEIQSRAE--ELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIE 61 Query: 60 HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 +P L +ED P ++GG + KVTH IP SL +++ E + F R+ Q Sbjct: 62 TNYPQLV-TED--SPTQRVGGIILPGFEKVTHDIPLYSLNDVFDKEGIVAFDARV----Q 114 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 K ++ + E KIDG I+++YE+G+FV A RGDG GE+++ ++ + +IP L L Sbjct: 115 KALGKAVDYVCELKIDGLSISLKYEEGRFVRGATRGDGTVGENITENLKTVKSIP--LKL 172 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLN 237 P +EVRGE Y+ K FL LN + G + +ANPRNAA+G LR+L+ T I R L+ Sbjct: 173 KEPISLEVRGECYMPKASFLKLNQQREEEGVEVFANPRNAAAGSLRQLD-TRIAAQRNLS 231 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F++ L I A Q+ L ++ LGF N+ R +T + +Y E RS LPY Sbjct: 232 TFLYTLADFGPIEANDQFSALNELDQLGFRTNHERRVCHTIDEVWAYIEEFHDKRSELPY 291 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG+V KV+ F Q LG ++PRW ++KF ++A T + I+ +GRTG++TP A Sbjct: 292 EIDGVVIKVNNFKDQDALGFTVKAPRWAAAYKFPPEEAETVIETIEWTVGRTGVVTPTAV 351 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 + PV + G ++ A+LHN D+IK +DIR+GD V++ +AG++IP+V ++ Sbjct: 352 MTPVRVAGTTVSRASLHNVDFIK-----------MKDIRIGDSVIIYKAGDIIPEVAKVL 400 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +R ++PF P+ CP C S ++ L+ + A RC C AQ E L HFVS Sbjct: 401 EEKRTETSEPFEAPTHCPECGSELIH-LDEEV-----ALRCINP-KCPAQIKEGLSHFVS 453 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R+A NI+GLG + L+ F + ++ AD++ L Q + KI+ + S N Sbjct: 454 RNAMNIDGLGPRVLEQMFDK----YLVKDVADLYFLTEEQLLTLDKIK------EKSANN 503 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +I++ + S+ER IF LGIRHVGA+ AR LA+++ + ++ Sbjct: 504 LLRAIHQSKENSVERLIFGLGIRHVGAKAARILAEHFGDLRTLSKAKEE----------E 553 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHE---KNVSSEIE 648 +I + +G IA+++V ++ N V LL E+ + +G + V S + Sbjct: 554 IISLETIGATIAESVVTYFDNQE----VHDLLDELEKAGVNFAYLGLRTDQLEEVESPFK 609 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TG L R +A+E + LG V+ +S+KTDI++ G+ GSKL KAQ LGV + Sbjct: 610 EKTVVLTGKLSHFTREEAKERIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGVTV 669 Query: 709 MNEEQFLFLLQ 719 +E Q + ++ Sbjct: 670 WDEAQMVAAIE 680 >gi|172036733|ref|YP_001803234.1| DNA ligase [Cyanothece sp. ATCC 51142] gi|254781304|sp|B1WZL6|DNLJ_CYAA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171698187|gb|ACB51168.1| DNA ligase [Cyanothece sp. ATCC 51142] Length = 676 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 238/715 (33%), Positives = 382/715 (53%), Gaps = 59/715 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++ ++ L Q++ + YY PI+ D+ YD L R D++ P L P+ P Sbjct: 6 EIKQRVTQLRQQLQKANYAYYVLDDPIMEDAVYDQLYRELDSLEKEHPQLI---TPDSPT 62 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + VTH+IP SLE +N+E+L+ + R R ++K++ S+ + E KID Sbjct: 63 QRVGDQPASQFVSVTHNIPLYSLENAFNLEELKAWEKRWQRSYEKEEFTSVEYVCELKID 122 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 G+ + + YE G FV RGDG +GE+++ +R I +IP L++ N P I+EVRGE ++ Sbjct: 123 GSALALTYENGLFVRGVTRGDGTTGEEITQNVRTIRSIPLKLNIDNPPPIVEVRGEAFLP 182 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253 ++F +N E G +ANPRNAA+G LR+L+P + R L FF + L E Sbjct: 183 LDEFDRINQEREEKGDALFANPRNAAAGTLRQLDPKIVDQRRLQFFAYTL-HLEEAEISS 241 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q+E L + GF VN + + +Y+ + ++ R LPY DG+V K++ +SLQK Sbjct: 242 QWESLNYLENSGFLVNPHRKLCQFLDEVEAYFKQWETARKDLPYMTDGVVVKINNYSLQK 301 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG + PRW I+ K+ ++A T + +I + +GRTG +TP+A +EPV++ G + ATL Sbjct: 302 ALGFTQKFPRWAIALKYPAEEAPTLVKNIVVNVGRTGAVTPMAVMEPVHLAGTTVQKATL 361 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I L DIRVGD V++++AGE+IP+VV ++ R P+ QP+ P Sbjct: 362 HNSDRIAQL-----------DIRVGDTVIIRKAGEIIPEVVRVLKELRPPNTQPYEMPDR 410 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S ++R +G+ A RC L+C A L H+ SRDA +I GLG++ + Sbjct: 411 CPECDSPLIR----PSGE--AVIRCM-NLSCEAILRGSLVHWASRDALDIRGLGEKIVVL 463 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + AD++ L + I N+ G S NL +I + R Sbjct: 464 LIENG----LVNSIADLYYL------TPETIANLERMGSKSADNLIKAIEGSKQQPFSRV 513 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 ++ LGIR+VG+ A L + + S +Q + SL V VG+ IAQ+I+ Sbjct: 514 LYGLGIRYVGSVTANLLVENFPSIDQLSQA----------SFASLSSVYGVGEEIAQSII 563 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----------IENKKLVFTGTLQKIQR 663 +++ +N ++ L K +G + SSE K V TGTL + R Sbjct: 564 DWFSIEKNCDLIKQLKK-----VGLQLETTSSEQITVEPSLTPFSGKTFVITGTLPTLTR 618 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++A+ + Q G V+ +S+KTD ++VG+ GSKL +A++LG+ ++E L LL Sbjct: 619 NEAKALIEQAGGKVTGSVSKKTDYLLVGEKAGSKLTQAEKLGINQLSEADLLRLL 673 >gi|260889570|ref|ZP_05900833.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254] gi|260860981|gb|EEX75481.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254] Length = 702 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 237/714 (33%), Positives = 382/714 (53%), Gaps = 52/714 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED-- 70 S +++ + L EI YH++ YY KP+I D EYDAL R + +P+L ++E+ Sbjct: 22 SFSDVQEKYAKLRNEIEYHNNLYYNEDKPLISDMEYDALMRELKQLEQKYPELLKNEENG 81 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ----KKDDNSI 126 + P KIGG + KV H +P LSL +NI ++ F RI + K+ + Sbjct: 82 ESSPTEKIGGTASEKFSKVRHRVPMLSLSNTYNISEIEDFDKRIKKIILSENVKEHSKEL 141 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + LE K+DG I++ YE G V A RGDG GEDV+ I I TIP+ L NI +E Sbjct: 142 EYILELKLDGLSISLIYENGVLVQAVTRGDGQVGEDVTENIMEITTIPKKLKENIS--LE 199 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245 VRGE+ + + F +N E G +ANPRNAASG +R+L+ T + R L+ +++ L Sbjct: 200 VRGEIILPISSFNRINQEREDDGEDVFANPRNAASGTIRQLDKTIVAERGLDCYLYYLVN 259 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 E ++ + LGF + F + ++ + R L Y+ DGLV K Sbjct: 260 AENYGINTHLESIEYIEKLGFKTTKIFEKYTDFKELEKSIDKWHNYRKKLDYETDGLVIK 319 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ F+L + LG +SPRW I++KF +Q T+L+D+ Q+GRTG++TPVA LE VN+ G Sbjct: 320 VNNFALYETLGYTTKSPRWAIAYKFPAEQVKTKLMDVTFQVGRTGVITPVAELEAVNLSG 379 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++ A+LHN D I+ +DI++GD V+V++A E+IP+VV+++ ++R Sbjct: 380 SVVKRASLHNFDEIR-----------RKDIKIGDNVIVEKAAEIIPQVVNVVFDDRTGQE 428 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ CP+C S + + + + A +C L C + ++ +FVSRDA NI G Sbjct: 429 IEIQEPANCPVCNSELAHE------EGLVALKCHNPL-CPEKVKRQIAYFVSRDAMNISG 481 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + ++ F + I+ DI++L++ ++ ++EN+ G SV NL +SI Sbjct: 482 LGDKIVEKFIE----LGKIKTIVDIYSLEKYRE----ELENLEKMGQKSVDNLINSIESS 533 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-QEINNIIAHNNDDWLSLIRVPLV 604 +N + +++LGI VG A L K + + +N Q I N++A V + Sbjct: 534 KNRDFSKVLYALGIPFVGKFNANLLTKTFKNIENLKNQSIENLLA-----------VKGI 582 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQK 660 GD +A A+ F + N + LK + E N + I++K + TG LQK Sbjct: 583 GDKVAVAVNTFLNDEDNWKIITD-LKNIGLQFAVDENNSEEIADNPIKDKNFLATGKLQK 641 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +R+ ++ + G + +S+ D +I G+ GSKLEKA++LGV+I+ E++F Sbjct: 642 YKRNDIKDIILSKGGNYLSAVSKNLDFLIAGEKAGSKLEKAEKLGVRILTEDEF 695 >gi|182411830|ref|YP_001816896.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1] gi|254778148|sp|B1ZWH2|DNLJ1_OPITP RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|177839044|gb|ACB73296.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1] Length = 675 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 240/732 (32%), Positives = 386/732 (52%), Gaps = 79/732 (10%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 + P+EA S ++ L +++ HD+ Y++ ++P I D EYDALKR + A+P Sbjct: 1 MTPVEAQS------RIAELRAQVARHDELYHRRAQPQIGDFEYDALKRELAELEAAWPQF 54 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 AR P ++G + H +SL+ ++ +LR+F R+ R ++ + Sbjct: 55 ARGASPT---EQVGDDRTEGFQVYRHRERMMSLDNTYSETELREFHDRLVRELER---DG 108 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNI 181 + F +EPKIDG ++I YEKGK V A RG+G G+D++ I ++PR L + + Sbjct: 109 LKFVIEPKIDGLAVSITYEKGKLVRAVTRGNGIEGDDITTNALTIKSLPRELKRADGVPL 168 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240 P +IE+RGEV+++ +FL +N + G YANPRN A+G +++L+P ++ R L + Sbjct: 169 PAVIEIRGEVFLTTEEFLRINRQREEAGEPLYANPRNLAAGTIKQLDPREVAQRKLEVVL 228 Query: 241 HGLG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G G + + + Q + ++ G P A I + E+ ++R T Y Sbjct: 229 YGRGYVEPASALPETQAQFHGWVKAWGLPTVERFWTATGADEIWAAVQELDALRDTFAYA 288 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 DG V K+D LQ++ G ++SPRW +++KFA +A T+L I +Q+GRTG+LTPVA L Sbjct: 289 TDGAVVKLDAVPLQRRAGSTSKSPRWAMAYKFAPDRAETQLRAITVQVGRTGVLTPVAEL 348 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV + G ++ ATLHN D I +DIRVGD V V++AGE+IP V+ + Sbjct: 349 DPVQLAGTTVSRATLHNRDEI-----------ARKDIRVGDFVYVEKAGEIIPAVIGVNP 397 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R P+ P+ FP CP C + VV+ G++ A RC +C Q R++HF S+ Sbjct: 398 ARRAPECVPYVFPEKCPECGTAVVQ----LEGEV--AVRCP-NFSCPVQVRRRVQHFASK 450 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG---DVSV 535 +IEG+G+ +D + + +P DI+ L+R EN+L G + S Sbjct: 451 ACVDIEGMGEAMVDVLVEK---GWVHSVP-DIYQLKR---------ENLLTLGKSVEKST 497 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY--------LSYQNFAQEINNI 587 L ++I + L RFI LGI H GA A+ LA+ + Y++F +E ++ Sbjct: 498 DKLLEAIEASKRAELWRFIHGLGIPHAGAAAAKDLARTFGGLERLASARYEDFIREKASV 557 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE 646 I +G+ +A AI+ ++ PRN V+ L++ V P + N S Sbjct: 558 IGG-------------IGETMALAILAYFAEPRNRAVVDELVRVGVQPVV----PNSGSA 600 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K V TGTL + R +A + G VS+ +S+KT ++ G+ GSKLEKA+ L V Sbjct: 601 LAGKTFVLTGTLPTLTRDEATAQIEAAGGKVSSGVSKKTSYVLAGEEAGSKLEKARALAV 660 Query: 707 KIMNEEQFLFLL 718 +++E +FL LL Sbjct: 661 PVIDEAEFLRLL 672 >gi|256826919|ref|YP_003150878.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641] gi|256583062|gb|ACU94196.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641] Length = 725 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 247/719 (34%), Positives = 389/719 (54%), Gaps = 63/719 (8%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + +L +EI ++ YY P I D+ +D+L R + P+ DP P ++GG Sbjct: 19 IEALRREIEHNSWLYYAQDAPAISDAAFDSLMRELRQLEAEHPEFY---DPTSPTQRVGG 75 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + VTH+ SL+ ++++L ++ R + + E KIDG+ I Sbjct: 76 YVGEQFAAVTHAERMYSLDNAMDLDELDAWMDRTFEALG----TDVPLCCELKIDGSGIA 131 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLN----IPEIIEVRGEVYI 193 + YE G+ + AA RGDG GEDV+A IR + +P R +L+ + E +E+RGEVY+ Sbjct: 132 VTYEDGRLMRAATRGDGVVGEDVTANIRTVRDVPLRLRAEALDALTDVEEALELRGEVYM 191 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 K F ALN GR+ +ANPRNAA+G LR+ +PT R L+ F + + + Sbjct: 192 PKKSFNALNAAADREGRQEFANPRNAAAGSLRQKDPTITAQRDLSTFTYATASNAALTLP 251 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 GQ+E+L+ MR GF VN VR ++ + ++ E R +LPY+IDG+V KV++FSLQ Sbjct: 252 GQWELLEWMRNAGFHVNPDVRLCHSRDEVRAFCKEALDKRQSLPYEIDGVVVKVNDFSLQ 311 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG AR+PRW I+ KF ++ +T L DI +Q+GRTG LTPVA LEPV++ G++++ AT Sbjct: 312 DRLGFTARAPRWAIAFKFPPEEKTTLLRDITVQVGRTGALTPVAELEPVSVSGSVVSRAT 371 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED ++ +D+RVGD V+V++AG+VIP+V+ +++ R DAQP+ P+ Sbjct: 372 LHNEDEVR-----------RKDVRVGDTVIVRKAGDVIPEVLGPVLSLRPADAQPWHAPT 420 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S VVR+ + G ++ RC L C AQ ERL H+ SR A +IEG+G++ + Sbjct: 421 SCPSCGSPVVRE---EGGAIL---RCV-SLDCPAQAHERLIHWASRGALDIEGMGEEVIG 473 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTS-----TTKIENILGFGDVSVTNLYDSINKRRN 547 +S + AD + L + K + G + I++ ++ Sbjct: 474 RLLES----GRVVDVADYYHLTEYDLATLDMGRVNKDGEAIHLGSTVAAKIVGQIDQSKH 529 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R +F LGIRHVG A ++A+ Y S + + A +D L + +G I Sbjct: 530 RGFARVLFGLGIRHVGKTTAEAIAQAYPSIEALRE------AKMDD----LAAIEGIGPI 579 Query: 608 IAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTL--QK 660 IA+++ F + P+N+ ++ LL E + R + +S V TG+L Sbjct: 580 IAESLFVFLRTPQNVQVIDRLLAAGVVMEEAALTPRAPQTLS----GLTFVLTGSLVQSG 635 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A + + +GA VS +S KT +I G+ GSK +KA LGV +++E FL +L+ Sbjct: 636 MTRTEAGDALKAMGAKVSGSVSGKTSFVIAGEAAGSKRDKAVSLGVPVIDEAAFLHILE 694 >gi|296110658|ref|YP_003621039.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154] gi|295832189|gb|ADG40070.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154] Length = 681 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 243/720 (33%), Positives = 400/720 (55%), Gaps = 61/720 (8%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + PIE L+ A++E+++ ++ + + YY+ P++ D YDAL R + AFP Sbjct: 4 EFTPIEQLTTPMAQQEIANHQETLLQYGVAYYEQDAPLVEDYVYDALYARLVELEAAFPQ 63 Query: 65 LARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 +P+ P K+GG + S L KV H P LSL ++++E+L ++ R + + Sbjct: 64 FI---NPDSPTQKVGGAITKSGLEKVVHPAPMLSLGDVFSLEELEEWDARTTKTLGFQS- 119 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + LE KIDG + + Y GK + A+ RG+G GEDV+A ++ I IP++L N P Sbjct: 120 ---AYNLELKIDGLAVALTYVDGKLIQASTRGNGMIGEDVTANVKMIKVIPQIL--NEPL 174 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242 IEVRGE+Y+SK+ F LN++ G P+ANPRNAA+G LR+LN + + R L+ FV+ Sbjct: 175 TIEVRGEIYMSKSSFATLNNQRETEGLAPFANPRNAAAGSLRQLNTSIMKQRQLSAFVYY 234 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + Q + L++ LG P ++ I Y ++ + R L Y IDG+ Sbjct: 235 TAEPDILGVTTQSQALERFHELGLPTDHHNHVILKMPDIADYISKYSADRDKLSYGIDGV 294 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KV+E Q LG + PRW I++KF ++A T L DI+ +GRTG +TP A ++PV Sbjct: 295 VVKVNELDDQTDLGNTVKIPRWAIAYKFPPEEALTILRDIEWTVGRTGAVTPTAVMDPVQ 354 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G + A+LHN DY+ + +R+GD V + +AG++IP++ +I+++R Sbjct: 355 LAGTTVQRASLHNPDYLN-----------DKGVRLGDTVTLHKAGDIIPEIGQVILSKRP 403 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 ++QP++ P CP C+S++V G++ A RC ACSAQ E L HF SR+A N Sbjct: 404 VNSQPYNIPLLCPACESKLVH----LEGEV--ALRCINP-ACSAQIQEGLAHFASRNAMN 456 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEG+G + + + A I A I+ L + T++ + F + SV+NL ++I Sbjct: 457 IEGMGPRVIAQLLQ----AGFIEDVASIYRL------NATQLHALDKFKEKSVSNLLNAI 506 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + ++ SLE+ +F LGIR VGA+ AR +A+ + + A+ + IA+ + Sbjct: 507 ERSKDNSLEKLLFGLGIRMVGAKAARLIAEKFKTLSVIARATVSEIAN----------ID 556 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-------SSEIENKKLVFT 655 +G+ IA+++V+++ P + + LLKE++ + G ++ + SS KK+V T Sbjct: 557 GIGETIARSLVQYFNMPES----QQLLKELTAA-GVNQSYLSEVVIDESSFFYGKKIVLT 611 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G L + R +++ GA VS+ +S KTD++I G + GSKL KA +LG+ + E Q + Sbjct: 612 GKLSESNRSAVSKWLQNHGASVSSAVSSKTDLLIAGTDAGSKLAKANELGIAVWTESQLI 671 >gi|254804544|ref|YP_003082765.1| DNA ligase [Neisseria meningitidis alpha14] gi|254668086|emb|CBA04596.1| DNA ligase [Neisseria meningitidis alpha14] Length = 841 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 269/825 (32%), Positives = 406/825 (49%), Gaps = 169/825 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALERNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV + K DF ALN Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y +M+ R LPY+IDG+V KV+ + Q++LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D + Sbjct: 338 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++ + T Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKEAADKTV 556 Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562 + + D SV N+ I + L RF+F+LGIRHV Sbjct: 557 AESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616 Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 G +ARS+A ++ + A I+ ++A Sbjct: 617 TLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675 Query: 597 SLIRVPL-----------------VGDIIAQAI-------VEFYQN-------------- 618 + +P + + AQA+ +E QN Sbjct: 676 QAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSE 735 Query: 619 PRNICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 P+N +E L + PS + ++ + K V TGTL ++R +AQ + Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840 >gi|299067453|emb|CBJ38652.1| DNA ligase [Ralstonia solanacearum CMR15] Length = 813 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/649 (35%), Positives = 345/649 (53%), Gaps = 61/649 (9%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 ++L ++ + YY +P + D+EYD L R +A+ P+L P+ P ++GG Sbjct: 18 AALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEADHPEL---RTPDSPTLRVGGA 74 Query: 82 MNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTM 138 + V H +P LS+ E F + R + D + + E K DG Sbjct: 75 VLPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRRELGLAESDPPVEYAAELKFDGLA 134 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISK 195 I +RYE+G V AA RGDG +GEDV+ IR I IP R + +P+++EVRGEVY+ + Sbjct: 135 INLRYERGFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRR 194 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAK 252 +DF LN G K + NPRN A+G +R+L+P R L+FF +GLG+ + + Sbjct: 195 DDFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPE 254 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ML + GFPV+ G+V ++ + + R +LP+DIDG+VYKV+ +LQ Sbjct: 255 THSGMLDALVAYGFPVSKERAAVTGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNSLALQ 314 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG R R PRW ++HK+ ++A T + I +Q+GRTG +TPVARL PV +GG +TNAT Sbjct: 315 RELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNAT 374 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER----------- 421 LHNED ++ +D+RVGD V+V+RAG+VIP+VV +++ R Sbjct: 375 LHNEDEVR-----------RKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDMPGSDLF 423 Query: 422 ----HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 P PF P CP+C S VVR+ G+ VA RC+GGL CSAQ+ E ++HF Sbjct: 424 NPAQQPKHPPFELPKSCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAG 477 Query: 478 RDAFNIEGLGKQQLDFFFKSE---DPAFSIRIPADIF-TLQRRQQTSTTKIENILGFGDV 533 R +IEGLG++ +D + E A R+ D F ++RR + G + Sbjct: 478 RRMMDIEGLGERYIDNLVELEYVHGIADLFRLTLDDFLEMKRRADERDGVTPETVAAGKI 537 Query: 534 SVT---NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + NL D I + L RF+F+LGIRHVG A++LA + S + + Sbjct: 538 ATKWAENLLDGIRASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPL--- 594 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639 L+ +P VG +A+AI +F+ P+N A++ALL G H Sbjct: 595 -------LLTLPDVGATVAEAIADFFAEPKNQQALDALLAAGVAPQGEH 636 Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 19/214 (8%) Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 AD F + QQ ++ +L G S R + +LG+ + A + Sbjct: 610 ADFFAEPKNQQA----LDALLAAGVAPQGEHAPSAKLREQLEPAALYAALGVPKLTAIRS 665 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + LA S AQ +AH + L + + +++ +E + + +EA Sbjct: 666 KQLATLVPS---LAQ-----LAHVDTAQLEGLPADVSASLLSW--LEADDHRAGLAQLEA 715 Query: 628 LLKEVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L E+ ++ G E+ + K +V TGTL + R +A+ + GA VS +S+KT Sbjct: 716 LRAELLAAMPAGAAEEGA---LSGKTVVLTGTLPTLSRDEAKAMLEAAGAKVSGSVSKKT 772 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 D ++ G+ GSKL +AQ+LGV++++E L LLQ Sbjct: 773 DYVVAGEEAGSKLARAQELGVRVLDEAGMLALLQ 806 >gi|310826558|ref|YP_003958915.1| DNA ligase [Eubacterium limosum KIST612] gi|308738292|gb|ADO35952.1| DNA ligase [Eubacterium limosum KIST612] Length = 666 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 243/703 (34%), Positives = 380/703 (54%), Gaps = 50/703 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++QA ++S L+++I ++ YY P+I D YD + + ++ A+P S+ P+ Sbjct: 5 LKQAEAKISQLKKQIEENNVRYYDKDAPVIPDYAYDRMMQELISLETAYPQFLTSDSPS- 63 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GG + + KV ++ P LSL +N DLR F TRI + + + +E K Sbjct: 64 --QRVGGAPSEAFEKVHYTTPKLSLSNAFNAGDLRDFDTRIRKVCP-----DVAYCVEHK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG + + YE G V + RGDG +GE+V+ ++ + TIP L L P +EVRGEV I Sbjct: 117 FDGLTVVLDYENGLLVRGSTRGDGVTGENVTQNLKTVKTIP--LRLTEPMTLEVRGEVLI 174 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 K DF LN G +ANPRNAA+G +R+L+P R L+ FV L + Sbjct: 175 YKEDFEELNAAREEQGEPLFANPRNAAAGSIRQLDPKLAAERPLDIFVFNLEYCENRSFE 234 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK-SIRSTLPYDIDGLVYKVDEFSL 311 E + GF + V+ I++Y EM+ R LPY+IDG+V KV+ + Sbjct: 235 THKESFDFLTHCGFKTSE-VKLYKDMEDIITYIEEMEHGGREALPYEIDGMVIKVNNLAE 293 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG+ ++SPRW I++KF+ +Q T + DI +Q+GRTG LTPVA LEPV + G++I+ A Sbjct: 294 RERLGDTSKSPRWAIAYKFSPEQTVTTVRDITVQVGRTGALTPVAELEPVLLAGSVISRA 353 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNEDYI +D +DIR+GDRV++++AG+VIP+V I +R F+ P Sbjct: 354 TLHNEDYI--ID---------KDIRIGDRVVIQKAGDVIPEVDHSIPEDRTGAEVVFTMP 402 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C S R G+ V +C + C AQ ++ HF SRDA NI+G+G + Sbjct: 403 AHCPVCGSETYR----VPGEAVT--KCL-NMDCPAQVFRKIVHFASRDAMNIDGMGPAVV 455 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +E I DI+ + R++ T + G+ SV NL ++I ++ L Sbjct: 456 RQLLDNE----LIHTIVDIYHVSDRREDLT----GLEKMGEKSVDNLINAIEDSKSRPLS 507 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F+LGI VGA A+ LA ++ S + L + +G +A Sbjct: 508 KVVFALGIPLVGANGAKILASHFGSMDALMEASEE----------ELTEIYDIGGKMAVE 557 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 IV+F++ N V+ L+E ++ + ++E+ K V TGTL + R +A+E + Sbjct: 558 IVDFFKTDANRRIVDG-LREAGVNMTENTARATAELAGKTFVLTGTLPTMGRREAKEILE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 GA VS +S+KTD ++ G+NPGSK EKA L V +++EE F Sbjct: 617 SHGAKVSGSVSKKTDYVLAGENPGSKAEKAMSLDVPVIDEETF 659 >gi|326804258|ref|YP_004322076.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a] gi|326651204|gb|AEA01387.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a] Length = 677 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 237/715 (33%), Positives = 388/715 (54%), Gaps = 60/715 (8%) Query: 15 EQARKE-LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +QA +E +++L +++ + YY +P + D YD R+ + + + PDL +S+ P Sbjct: 11 QQAVQERMAALVDQLNQYAHEYYVLDQPSVSDDHYDKTYRQLEELEASHPDLIQSDSPT- 69 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G +N KV P LSL +++ E+L ++ + QK+ F E K Sbjct: 70 --QRVGDVLNEKFDKVHFDQPMLSLGDVFSQEELMAWVGGV----QKEFGQDTEFVCEMK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG +++ Y+ G+ V A RGDG++GE+++ I+ I +IP L L P +EVRGE+Y+ Sbjct: 124 IDGLSVSLLYQDGRLVRGATRGDGNTGENITNNIKTISSIP--LRLQEPLSVEVRGEIYM 181 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 K F LN++ A G +ANPRN+A+G +R+L+P R LN F++ ++ Sbjct: 182 PKASFAQLNEDREAAGLATFANPRNSAAGSVRQLDPKVTAKRNLNVFLYTGVLPADAGIN 241 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E+L G VN + ++ I Y ++ IR L YDIDG+V KV++F Q Sbjct: 242 SQAELLTSYPQWGLRVNPEFKLTHSKEEIWDYVEKVSQIRHDLAYDIDGIVIKVNDFDQQ 301 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG ++PRW I++KF +QA T + DI+ +GRTG++TP A ++PV + G+ + A+ Sbjct: 302 EELGYTVKAPRWAIAYKFPAEQAKTTIRDIEWTVGRTGVVTPTAVMDPVLVAGSTVQRAS 361 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ +DIR+ D+V++ +AG++IP+VV +I ER D+Q + P Sbjct: 362 LHNMDLIR-----------AKDIRLNDKVIIHKAGDIIPEVVSVITEERDADSQAYPEPQ 410 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CPICQS +V + A RC AC AQ E+L HFVSR+A +I G+G + Sbjct: 411 TCPICQSDLVHLEDE------VALRCVNP-ACPAQAKEKLFHFVSRNAMDITGVGPAVIT 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + D A+ ++ P+D++ L + K++ + S N+ +I++ R SLER Sbjct: 464 QLY---DKAY-VKDPSDLYQLDEATLLTLDKVK------EKSAQNILQAIDQSRENSLER 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRHVG + AR +A + S + A D ++ + +G+IIA ++ Sbjct: 514 LLFGLGIRHVGVKAARDIAMTFGSME----------AIQTADREAISAIDGIGEIIADSV 563 Query: 613 VEFYQNPRNICAVEALLKE--------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 VE++ N I V L + SP + +V S + K +V TG L R Sbjct: 564 VEYFANDEVIALVNRLSERGVNMTYLGSSP---QAIASVDSFWQGKTVVLTGKLNHYSRQ 620 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ + G V+ +S+ TD+++ G++ GSKL KAQ L + I +EE+ L L+ Sbjct: 621 EAKSLIEGQGGKVTGSVSKNTDVVVAGEDAGSKLTKAQDLDILIFDEEEMLSHLE 675 >gi|257875591|ref|ZP_05655244.1| DNA ligase [Enterococcus casseliflavus EC20] gi|257809757|gb|EEV38577.1| DNA ligase [Enterococcus casseliflavus EC20] Length = 676 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 246/696 (35%), Positives = 383/696 (55%), Gaps = 63/696 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY +P + D YD L I +P L +ED P ++GG + KVTH IP Sbjct: 26 YYVKDQPSVEDYLYDQLYAELVEIETNYPQLV-TED--SPTQRVGGIILPGFEKVTHDIP 82 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL +++ E + F R+ QK ++ + E KIDG I+++YE+G+FV A R Sbjct: 83 LYSLNDVFDKEGIVAFDARV----QKALGKAVDYVCELKIDGLSISLKYEEGRFVRGATR 138 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+++ ++ + +IP L L P +EVRGE Y+ K+ FL LN + G + +A Sbjct: 139 GDGTVGENITENLKTVKSIP--LKLKEPISLEVRGECYMPKSSFLKLNQQREEEGAEVFA 196 Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 NPRNAA+G LR+L+ T I R L+ F++ L I A Q+ L ++ LGF N+ Sbjct: 197 NPRNAAAGSLRQLD-TRIAAQRNLSTFLYTLADFGPIEANDQFSALNELDQLGFRTNHER 255 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 R +T + +Y E RS LPY+IDG+V KV+ F Q LG ++PRW ++KF Sbjct: 256 RVCHTIDEVWAYIEEFHDKRSELPYEIDGVVIKVNNFKDQDALGFTVKAPRWAAAYKFPP 315 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 ++A T + I+ +GRTG++TP A + PV + G ++ A+LHN D+IK Sbjct: 316 EEAETVIETIEWTVGRTGVVTPTAVMTPVRVAGTTVSRASLHNVDFIK-----------M 364 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 +DIR+GD V++ +AG++IP+V ++ +R +QPF P+ CP C S ++ L+ + Sbjct: 365 KDIRIGDSVIIYKAGDIIPEVAKVLEEKRTEASQPFESPTHCPECGSELIH-LDEEV--- 420 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 A RC C AQ E L HFVSR+A NI+ LG + L+ F D + ++ AD++ Sbjct: 421 --ALRCINP-KCPAQIKEGLSHFVSRNAMNIDSLGPRVLEQMF---DKSL-VKDVADLYF 473 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L Q + KI+ + S NL +I++ + S+ER IF LGIRHVGA+ AR LA+ Sbjct: 474 LTEEQLLTLDKIK------EKSANNLLRAIHQSKGNSVERLIFGLGIRHVGAKAARILAE 527 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 ++ ++ A + +I + +G IA+++V ++ N V LL E+ Sbjct: 528 HF----------GDLRALSKAKEEEIISLEAIGATIAESVVTYFDNQE----VHDLLDEL 573 Query: 633 SPS------IG-RHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 + +G R+E+ +V S + K +V TG L R +A+E + LG V+ +S+ Sbjct: 574 ERAGVNFAYLGLRNEQLEDVESPFKEKTVVLTGKLSHFTREEAKERIENLGGKVTGSVSK 633 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 KTDI++ G+ GSKL KAQ LGV + +E Q + ++ Sbjct: 634 KTDIVVAGEEAGSKLTKAQSLGVTVWDEAQMVAAIE 669 >gi|160889578|ref|ZP_02070581.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492] gi|317480069|ref|ZP_07939180.1| DNA ligase [Bacteroides sp. 4_1_36] gi|156861095|gb|EDO54526.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492] gi|316903746|gb|EFV25589.1| DNA ligase [Bacteroides sp. 4_1_36] Length = 665 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 243/708 (34%), Positives = 374/708 (52%), Gaps = 54/708 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E+ H+ YY + P I D E+D L R + P+ +D N P + Sbjct: 4 KEKIDQLRAELHQHNYNYYVLNAPEISDKEFDDLMRELQDLEKEHPEY---QDDNSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136 +G ++N + +V H P LSL ++ ++ F R+ KK N F E K DG Sbjct: 61 VGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYERV-----KKALNEDFEICCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE GK V A RGDG G+DV+ ++ I TIP VL N P+ E+RGE+ + Sbjct: 116 TSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNYPKSFEIRGEILMPWV 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + +R L+ +++ L E+ G Y Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ GF + R+A++ + Y N + R LP DG+V KV+ QK L Sbjct: 235 ENLQAAASWGFKTSEHTRKAHSLEEVFEYINYWDTERKNLPVATDGIVLKVNSLRQQKNL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + C Sbjct: 355 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S+++R AAH C AC Q +++HF+SR A NI+GLG + +D F Sbjct: 404 PECGSKLIRFEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ I+ AD++ L+ T I+N+ G+ S N+ + I + + ER + Sbjct: 458 YR----LGLIKDTADLYQLK------TDDIKNLERMGEKSAENIVNGIAASKEVPFERVL 507 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG +A+ +AK + + N D L + +G+ IAQ+I+ Sbjct: 508 FALGIRFVGETVAKKIAKSFTDIEEL----------ENADLEKLKNIDEIGEKIAQSIIT 557 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671 ++ NP N VE LK + R E+++S ++ + +V +G R + +E + Sbjct: 558 YFSNPANRELVER-LKSNGLQLHRTEEDLSGYTDKLAGQSIVISGVFTHHSRDEYKEMIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ G+N G +KLEKAQ+LGVKIM+E++FL LL Sbjct: 617 KNGGKNVGSISSKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLALL 664 >gi|307244055|ref|ZP_07526174.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678] gi|306492579|gb|EFM64613.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678] Length = 702 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 237/697 (34%), Positives = 378/697 (54%), Gaps = 53/697 (7%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 ++YH D YY P I D +YD L + + AFP+ + + P ++GG Sbjct: 38 LNYHSDRYYNSDSPEISDMDYDRLMKSLILLEEAFPEYKKKDSPT---VRVGGRALDKFD 94 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 + H P LSL ++N E++R F R+ R + + + + +E KIDG + + YE G Sbjct: 95 QYQHERPMLSLSNVFNNEEIRDFDRRV-RGGLEPANGQVNYVVETKIDGLSVGLTYEDGY 153 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 A RGDG+ GE+V+ I+ I +IP + ++ + RGEVYISK+DF A+N Sbjct: 154 LRVGATRGDGYIGENVTENIKTIASIP--IKIDEKRKLVARGEVYISKSDFEAVNAYQED 211 Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266 + YANPRN A+G LR+L+P R L+ F+ L ++ + + M+ LG Sbjct: 212 HDLQTYANPRNLAAGSLRQLDPKLAAKRPLDIFIFNLENIDDLGIEKHSQSFDYMKSLGL 271 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 VN + ++ Y RS+LPY+IDG+V KVD + ++ LG A+SPRW Sbjct: 272 KVNEEYKLCKDIEEVIDYIEYWTENRSSLPYEIDGMVIKVDSIAQREALGFTAKSPRWAT 331 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 + KF ++ T+LLDI++++GRTG +TP A LEPV + G +++ ATLHNEDYIK Sbjct: 332 AFKFPAERKKTKLLDIEVEVGRTGTITPTAILEPVRLAGTMVSRATLHNEDYIK------ 385 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 RDIR+GDRVLV++AG++IP+VV++ +++R F P CP C VR L+ Sbjct: 386 -----ERDIRIGDRVLVQKAGDIIPQVVEVSLDDRTGQEVMFDMPHECPACGQETVR-LD 439 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 + AA +C ++C AQ + HFVSRDA +IEG+G+ + I+ Sbjct: 440 GE-----AAVKCI-NISCPAQIRRGIIHFVSRDAMDIEGMGESIITSLLDK----GVIKD 489 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 AD++ + S ++ G SV NL SI K ++ L R I LGIR VG + Sbjct: 490 IADLYYMDPDILVSLDRM------GQKSVANLMASIEKSKSNDLWRLINGLGIRFVGVKG 543 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 A+ LA + ++ I+A + +D LI++ G I++ ++V+F+ +N VE Sbjct: 544 AKLLA-------DACGSMDKIMAASEED---LIQIEEFGQIMSDSVVKFFHEDKNKLTVE 593 Query: 627 ALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 L + EV I + ++ ++ E K+V TGTL ++R+ A+ + + ++ + Sbjct: 594 KLRQAGLNMEV---IEKEDQGIAKVFEGMKIVLTGTLPSMKRNDAKALIEERAGKATSSV 650 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S+ T ++ G+ GSKL+KA LGVK+++E +F+ L+ Sbjct: 651 SKSTSFVLAGEEAGSKLDKALSLGVKVIDEAKFMELV 687 >gi|330466191|ref|YP_004403934.1| DNA ligase [Verrucosispora maris AB-18-032] gi|328809162|gb|AEB43334.1| DNA ligase, NAD-dependent [Verrucosispora maris AB-18-032] Length = 717 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/713 (33%), Positives = 372/713 (52%), Gaps = 51/713 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QAR+ ++L QE++ H YY P + D+E+D R A+ FP L P+ P Sbjct: 31 QARERHATLSQELTEHQYRYYVLDAPTVSDAEFDRQLRELTALEEEFPAL---RTPDSPT 87 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + V H+ +SL+ + E+L + R+ ++ + + E K+D Sbjct: 88 QRVGGTFSTDFTPVAHAERMMSLDNAFADEELAAWAERV----ERDAGGPVPYLCELKVD 143 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGE 190 G I + Y+ G+ + AA RGDG +GEDV+A +R+I +P L+ + +PE IEVRGE Sbjct: 144 GLAINLTYQGGRLIRAATRGDGRTGEDVTANVRSIRDVPSRLTDSAEYGPVPEFIEVRGE 203 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249 +Y F LN ++ G+ P+ANPRNAA+G LR+ +P +R L VHG+G Sbjct: 204 IYFPVEAFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGIGARKGF 263 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q E ++ G P ++ R G+ Y + R + ++IDG+V KVD Sbjct: 264 QPSTQSESYSALKAWGLPTSDRWRVLPDLTGVRDYIAHYAAHRHDVEHEIDGVVVKVDPV 323 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +Q +LG +R+PRW I+ K+ ++ +T+LLDI++++GRTG +TP A LEPV + G+ + Sbjct: 324 PIQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRALLEPVKVAGSTVA 383 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + +V R G + +GD V++++AG+VIP+V+ +V+ R PDA+PF Sbjct: 384 YATLHN---------AREVERKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRPPDARPFV 432 Query: 430 FPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C + L P K G + RC +C AQ ER+ H R AF+IE LG Sbjct: 433 MPTTCPACGT----PLAPAKEGDVDI--RCPNSRSCPAQLRERVFHLAGRGAFDIEALGY 486 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ I D+F+L Q + N G + T L D++ R Sbjct: 487 KSGAALLDAQ----IITDEGDLFSLDAEQLARSPFFVNKDGSLGSNATKLLDNLAVARER 542 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L R + +L IRHVG A++LA+++ S I A +N L V VG I Sbjct: 543 DLWRVLVALSIRHVGPTAAQALARHFRS----------IEAIDNASEEELSSVDGVGPTI 592 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHK 665 A +I E++ + E + K + E+ V+ +E +V TGTL R + Sbjct: 593 AASIREWFAVDWH---REVVRKWAEAGVRMAEEAVAEGPRPLEGLTVVVTGTLSGYSRDQ 649 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A E + G VS +S+KT ++VGDNPGSK +KA L V I++EE F LL Sbjct: 650 AAEAIQSRGGKVSGSVSKKTGFVVVGDNPGSKADKAATLKVPILDEEGFQVLL 702 >gi|219667570|ref|YP_002458005.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2] gi|254781313|sp|B8FP44|DNLJ_DESHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219537830|gb|ACL19569.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2] Length = 659 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 236/700 (33%), Positives = 369/700 (52%), Gaps = 51/700 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + +L ++I + YY +P + D+EYDAL + + P+ P+ P ++GG Sbjct: 8 IEALREQIEEANYQYYGLDQPTLSDAEYDALLQELIRLEKEHPEFL---TPDSPSQRVGG 64 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + KV H+ LSL+ ++ DL +F R+ + + + +E KIDG + Sbjct: 65 YIAKEFPKVRHAEALLSLDNAFDAGDLLEFDRRVRSMVAE-----VEYVVELKIDGLTVA 119 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YE G V A RGDG GE+++A ++ IP IP L + ++VRGE Y+ K FL Sbjct: 120 LTYEDGALVRGATRGDGEVGEEITANLKTIPAIPLRLRKQA-DRLDVRGEGYMPKGSFLR 178 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEML 258 LN E G+ +ANPRNAA+G LR+L+ + IT R L +F + + E Q +L Sbjct: 179 LNQEREEAGQPLFANPRNAAAGSLRQLD-SRITAQRKLGYFAYQVLTPEEGELASQTAVL 237 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ GF VN R + +++Y EM R PYDIDGLV KV++ + Q++LG Sbjct: 238 DYLKEQGFSVNPEYRVFSAIEEVIAYCGEMVEKRHNYPYDIDGLVIKVNDIAQQRELGFT 297 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A+SPRW I++KF +Q T + DI I++GRTG+LTP A L PV + G+ + ATLHN D Sbjct: 298 AKSPRWAIAYKFPAEQVETVVEDIVIRVGRTGVLTPTAYLTPVFVAGSTVGRATLHNLDN 357 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I+ +D+R+GD VL+++AG+VIP+VV I+ +R + F P CP CQ Sbjct: 358 IR-----------AKDVRIGDHVLIQKAGDVIPEVVKILPEKRTGGERIFEMPELCPECQ 406 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S V+R+ AAHRCT + C A+Q E + HFVSR+A NI+GLG + + Sbjct: 407 SPVIREEGE------AAHRCT-SITCPARQREAIIHFVSRNAMNIDGLGPAVIYQLLE-- 457 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A I+ AD++ L+ ++ G S NL +I + L IF LG Sbjct: 458 --AGLIKDAADLYALEYDALVPLERL------GKKSAENLLKAIEDSKERGLAPLIFGLG 509 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG + + LA+ Y + ++ L +P VG +AQ++ +F+Q Sbjct: 510 IRHVGEKAGKILAQKYGTMEDL----------EKAQVEELQEIPDVGPAMAQSVAQFFQQ 559 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 + L++ + K +V TG+LQ+ RH + + + G + Sbjct: 560 ESTHHFLNK-LRQAGVVMSAQHSAKPQIFAGKSIVVTGSLQRWDRHYVETMIEEFGGKAA 618 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S+KT ++ G+ GSKL KA++LG+ +++EE+F LL Sbjct: 619 SSVSKKTAFVVAGEKAGSKLAKAKELGIPVLSEEEFAELL 658 >gi|295107089|emb|CBL04632.1| DNA ligase, NAD-dependent [Gordonibacter pamelaeae 7-10-1-b] Length = 731 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 246/728 (33%), Positives = 383/728 (52%), Gaps = 59/728 (8%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 EA S AR E +L +EI +H YY P I D +D+L R + A P+L Sbjct: 39 EATSDPAARIE--ALRREIEHHTYLYYAQDAPEISDGAFDSLMRELRELEAAHPELV--- 93 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 DP+ P ++GG + V H+ SL+ ++E+L +I R+ + + + Sbjct: 94 DPSSPTQRVGGYVGEQFAPVRHARRMYSLDNAMDLEELDAWIERVTEAFGRM----VPVV 149 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSL----NIP 182 E KIDG+ I + YE G+ V AA RGDG +GEDV+A +R + +P R +L + Sbjct: 150 CELKIDGSSIALTYEDGRLVRAATRGDGTTGEDVTANMRTVKDVPLRLREAALGGLRDAA 209 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 +E+RGEVY+ K+ F ALN +A G++ +ANPRNAA+G LR+ +P R L+ F++ Sbjct: 210 APVELRGEVYMPKSSFDALNAAAVANGKQAFANPRNAAAGSLRQKDPAITANRDLSTFIY 269 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + + +GQ+E+L +R GF VN V T + ++ R LPY+IDG Sbjct: 270 AVADERALAVEGQWELLAWLREAGFHVNPDVELCETREAVHAFCERAIERREALPYEIDG 329 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KV+ F+ Q+ +G AR+PRW ++ KF ++ +T L DI +Q+GRTG LTPVA +EPV Sbjct: 330 VVVKVNAFAQQESMGYTARAPRWAVAFKFPPEEKTTLLHDITVQVGRTGKLTPVAEMEPV 389 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ + ATLHNED ++ +D+RVGD V+V++AG+VIP+V+ ++ R Sbjct: 390 VVAGSTVARATLHNEDEVQ-----------RKDVRVGDTVIVRKAGDVIPEVLGPVLALR 438 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 DA + P+ CP C S V+R+ G++ RC + C AQ LERL H+ SR A Sbjct: 439 PADAAVWRMPATCPSCGSPVIRE----EGEV--DFRCI-SIDCPAQALERLLHWASRGAM 491 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ-----QTSTTKIENILGFGDVSVT 536 +I+G+G++ + +S + AD +TL + K + G Sbjct: 492 DIDGMGEEIVSRLVES----GRLTDVADYYTLDEVELALLDMGRVNKDGEPIRLGSTVAK 547 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 L +I+ R R +F LGIRHVG IA LA Y S I ++ + +D Sbjct: 548 KLVAAIDGSRARPFSRALFGLGIRHVGKTIAELLAAAYPS-------IEALMEASEEDLA 600 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKKLV 653 +L VG IA+++ F + P N +E L K ++ ++ + +E V Sbjct: 601 ALDG---VGPKIARSVYLFLRTPDNAAVIERLRKRGVAMADEAADPDEQLPQTLEGLTFV 657 Query: 654 FTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 TG+L + R +A + GA VS +S+KT ++ G+ GSK +KA LGV +++E Sbjct: 658 LTGSLVESGMTRDEAGAALKARGAKVSGSVSKKTSYVVAGEAAGSKYDKAVTLGVPVLDE 717 Query: 712 EQFLFLLQ 719 L +L+ Sbjct: 718 AALLRILE 725 >gi|164686703|ref|ZP_02210731.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM 16795] gi|164604093|gb|EDQ97558.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM 16795] Length = 674 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/713 (33%), Positives = 391/713 (54%), Gaps = 56/713 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A+K + L I+YH++ YY P I D EYD L + + P+L R++ P+ N Sbjct: 3 AQKRIEELINLINYHNEKYYNQDSPEIEDFEYDNLMKELIKLEEENPELKRNDSPS---N 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG+ +V H IP LSL ++ EDL+ F +R+ ++ + + + +E KIDG Sbjct: 60 RVGGKPLDKFEQVVHKIPMLSLSNAYSWEDLKDFDSRV----REAVGSDVEYVVEFKIDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYIS 194 + + Y G F A RG+G GE+++ + I IP LNI E E VRGEVYIS Sbjct: 116 LSVGLNYNNGIFESGATRGNGIVGENITKNLMTIKNIP----LNIDEKGELTVRGEVYIS 171 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K DF +N + YANPRN A+G LR+L+ R L+ F+ L + K Sbjct: 172 KKDFEEINKIQEEQDQPLYANPRNLAAGSLRQLDSKLTAKRPLDIFIFNLEDINSKQFKT 231 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L+ ++ LGF V+ + T I+ Y R L + IDG+V KV+ + ++ Sbjct: 232 HSESLEYLKQLGFHVSPEFKVFKTMDEIIEYIKYWTEHREDLGFGIDGMVIKVNNLAQRE 291 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 Q+G A+SPRW I++KF ++ T+LLDI +++GRTG +TP A LEP+ + G ++ ATL Sbjct: 292 QMGYTAKSPRWAIAYKFPAERKETKLLDIVVEVGRTGTITPTAVLEPIRLAGTTVSRATL 351 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNEDYI +DI++ D VLV++AG++IP+VV++I +R + F P Sbjct: 352 HNEDYI-----------NEKDIKINDTVLVQKAGDIIPQVVEVIKEKRTGEEIEFKMPEE 400 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C VR G+ AA +C ++C AQ + HF SR+A +I+GLG+ + Sbjct: 401 CPVCGEPTVR----LEGE--AAVKCI-NISCPAQIRRGIIHFASREAMDIDGLGESIITL 453 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 K + I+ +D++ L++ Q + ++ GD S TNL ++INK + L RF Sbjct: 454 LLKQD----LIKDISDLYYLKKEQISVLERM------GDKSATNLINAINKSKENDLWRF 503 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I LGI+ +G + A+ LA + ++++ +++ + LI + G +A ++V Sbjct: 504 INGLGIKLIGTKAAKILASEF-------KDLDKLMSATEQE---LINLEEFGQTMADSVV 553 Query: 614 EFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 EF++ +NI +E LKE + I ++++ E K+V TGTL ++R+ A+E + Sbjct: 554 EFFKEEKNISVIEK-LKEAGVNTKLIESDDEDIPKIFEKMKIVLTGTLPTLKRNDAKEMI 612 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL L+ T Sbjct: 613 EKRGGKATSSVSKSTSFVLAGEEAGSKLTKANDLGIKVIDEEKFLQLIDLKTT 665 >gi|315641089|ref|ZP_07896168.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952] gi|315483097|gb|EFU73614.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952] Length = 671 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/719 (32%), Positives = 385/719 (53%), Gaps = 77/719 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L+++++ + YY +P++ D+ YD L ++ A+ A P+ S+ P ++ Sbjct: 7 EQIHDLQKKLTEYAYAYYVKDQPVVDDAYYDQLYQQLVALETAHPEYQTSDSPT---QRV 63 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + KV H IP SL +++ ++ F R+ QK +++ + E KIDG Sbjct: 64 GGVVRKGFEKVVHEIPLYSLNDVFSKAEIIAFDQRV----QKTLGHAVSYICELKIDGLS 119 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I+++YE G+ V A RGDG GE+++ + + +IP L+L P IEVRGE Y+ K F Sbjct: 120 ISLKYENGRLVRGATRGDGTIGENITDNSKTVKSIP--LTLTEPIDIEVRGECYMPKASF 177 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEM 257 + LN + G +ANPRNAA+G +R+L+ +R L+ F++ L + Q E Sbjct: 178 IQLNQKREEEGLDIFANPRNAAAGSIRQLDSKVTASRNLSTFLYTLADFGPLHVTNQAEA 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L + LGF N +T + +Y RS LPY+IDG+V KV++FS Q QLG Sbjct: 238 LTHLDDLGFRTNQERAVCSTIDDVWAYIESFHDKRSQLPYEIDGVVIKVNDFSDQNQLGF 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW +++KF ++A T + +I+ +GRTG++TP A + PV + G + A+LHN D Sbjct: 298 TVKAPRWAVAYKFPPEEAQTTIEEIEWTVGRTGVVTPTAVMTPVRVAGTTVARASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YIK +DIR+ D+V++ +AG++IP+V +I R +QP++ P+ CP+C Sbjct: 358 YIK-----------MKDIRLHDQVVIYKAGDIIPEVAHVIEEARDSASQPYTIPTNCPVC 406 Query: 438 QSRVV--------RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 S +V R +NPK C A E + HFVSRDA NIEG+G + Sbjct: 407 GSELVHLDEEVALRCINPK---------------CPALLKEGISHFVSRDAMNIEGIGPR 451 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ FF + F + AD++ L Q + K++ + S TN+ +I + S Sbjct: 452 MIEQFF---NHGF-VEDVADLYRLTLDQLLTIDKVK------EKSATNMLQAIEASKQNS 501 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LE+ +F LGIRHVG + A+ LA+ + + +Q ++ V +G IA Sbjct: 502 LEKLLFGLGIRHVGVKAAKLLAERFETLTQLSQATVE----------EILTVATIGPTIA 551 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVS---SEIENKKLVFTGTLQK 660 ++V ++ N V L+ E+ + +G ++V+ S + K +V TG LQ Sbjct: 552 DSLVTYFANEE----VHELMTELKAAGVNETYLGLKSQDVAEIESAFQGKTVVLTGKLQT 607 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A++ + +LG ++ +S+KTD++I G + GSKL KAQ L + + EE+ + L+ Sbjct: 608 YTRDQAKKRIEELGGTITGSVSKKTDLVIAGADAGSKLTKAQALDIPVWTEEEMIAALE 666 >gi|126700928|ref|YP_001089825.1| DNA ligase [Clostridium difficile 630] gi|123362868|sp|Q180F3|DNLJ_CLOD6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 677 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 233/707 (32%), Positives = 387/707 (54%), Gaps = 52/707 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 + E++ L + I+YH++ YY P I D EYD L + ++ P+L R + P N Sbjct: 6 VKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKR---IDSPTN 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG+ ++ H P LSL ++ +DLR F R+ + + ++ + +E KIDG Sbjct: 63 RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + Y G+F A RGDG GED+S + + +IP L +N + + VRGEVYISK+ Sbjct: 119 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 +F +N++ + +ANPRN A+G LR+L+P R L+ FV + E + Sbjct: 177 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHS 236 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+ + LGF V+ + + ++ + R L Y+IDG+V KV+ + ++ Sbjct: 237 ESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEM 296 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++ T+++DI +++GRTG +TP A LEPV + G ++ ATLHN Sbjct: 297 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 356 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 EDYI+ +DI++ D VLV++AG++IP+V+++I ER D F P CP Sbjct: 357 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 405 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C +R G+ AA +C ++C AQ + HFVSRDA NI+GLG+ + Sbjct: 406 VCSEPTIR----LEGE--AAVKCI-NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 +I D+ L ++ +E + G+ S NL +SI K + L R I Sbjct: 459 NE-------KIIQDVSDLYYIKKEDVVDLERM---GEKSADNLINSIEKSKENDLWRLIN 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGI+ +G + A+ LA NF ++++ +I+ ++ L + G I+A ++VEF Sbjct: 509 GLGIKFIGVKAAKILA------YNF-KDLDEVISATSE---QLEELEEFGSIMANSVVEF 558 Query: 616 YQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ +N+ + LK V + S+ + V E K+V TGTL ++R+ A+E + + Sbjct: 559 FKEDKNMNVINK-LKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKEMIEK 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL LL+ Sbjct: 618 RGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 664 >gi|17546117|ref|NP_519519.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) protein [Ralstonia solanacearum GMI1000] gi|81505313|sp|Q8XZJ7|DNLJ_RALSO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|17428413|emb|CAD15100.1| putative dna ligase (polydeoxyribonucleotide synthase [nad+]) protein [Ralstonia solanacearum GMI1000] Length = 813 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 235/683 (34%), Positives = 359/683 (52%), Gaps = 63/683 (9%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 ++L ++ + YY +P + D+EYD L R +A+ P+L P+ P ++GG Sbjct: 18 AALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPEL---RTPDSPTLRVGGA 74 Query: 82 MNLSLFKVTHSIPTLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTM 138 + V H +P LS+ E F + R + D + + E K DG Sbjct: 75 VLPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRRELGLAESDPPVEYAAELKFDGLA 134 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISK 195 I +RYEKG V AA RGDG +GEDV+ IR I IP R + +P+++EVRGEVY+ + Sbjct: 135 INLRYEKGFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVGGAVPDVLEVRGEVYMRR 194 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAK 252 +DF LN G K + NPRN A+G +R+L+P R L+FF +GLG+ + Sbjct: 195 DDFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPD 254 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ML + GFPV+ G+V ++ + + R +LP+DIDG+VYKV+ +LQ Sbjct: 255 THSGMLDALVAYGFPVSKERAAVKGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNSLALQ 314 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG R R PRW ++HK+ ++A T + I +Q+GRTG +TPVARL PV +GG +TNAT Sbjct: 315 RELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNAT 374 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER----------- 421 LHNED ++ +D+RVGD V+V+RAG+VIP+VV +++ R Sbjct: 375 LHNEDEVR-----------RKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLF 423 Query: 422 ----HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 P PF P CP+C S VVR+ G+ VA RC+GGL CSAQ+ E ++HF Sbjct: 424 NPTQQPKHPPFELPRSCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAG 477 Query: 478 RDAFNIEGLGKQQLDFFFKSE---DPAFSIRIPADIF-TLQRRQQTSTTKIENILGFGDV 533 R +IEGLG++ +D + E A R+ D F ++RR + G + Sbjct: 478 RRMMDIEGLGERYIDNLVELEYVHGIADLYRLTLDDFLEMKRRADERDGVTPETVAAGKI 537 Query: 534 SVT---NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + NL D I + L RF+F++GIRHVG A++LA + S + + Sbjct: 538 ATKWAENLLDGIRASKTPPLARFLFAMGIRHVGESTAKTLADWLGSLAIVRRAPAPL--- 594 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIE 648 L+ +P VG +A+AI +F+ P+N A++ALL G H + + ++E Sbjct: 595 -------LLTLPDVGATVAEAIADFFAEPKNQQALDALLTAGVAPQGEHPPSAKLRDQLE 647 Query: 649 NKKLVFTGTLQKIQRHKAQEYVT 671 +L + K+ ++++ T Sbjct: 648 PAELYAALGVPKLTAIRSKQLAT 670 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 47/73 (64%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +V TGTL + R +A+ + GA VS +S+KTD ++ G GSKL +AQ+LGV Sbjct: 734 LSGKTVVLTGTLPTLSRDEAKAMLEAAGAKVSGSVSKKTDYVVAGVEAGSKLARAQELGV 793 Query: 707 KIMNEEQFLFLLQ 719 ++++E L LLQ Sbjct: 794 RVLDEAGMLALLQ 806 >gi|255327262|ref|ZP_05368336.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296] gi|255295542|gb|EET74885.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296] Length = 735 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 251/748 (33%), Positives = 384/748 (51%), Gaps = 63/748 (8%) Query: 4 RQLIPIE--ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 +Q P E A E R E + L +I YY P + D+EYD L RR + I Sbjct: 8 QQTAPAENTAEITEALRAEYAELTDKIRAARRAYYNEDAPFLSDAEYDKLYRRLEIIEAE 67 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 P + ++ P ++GGE + VTH SLE +++ E+LR ++T+ + Sbjct: 68 HPLIIANDSPT---QEVGGEAIEAFAPVTHLQRMYSLEDVFSFEELRAWLTKTEESTRNL 124 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LN 180 ++ + E KIDG + + Y G V AA RGDG +GEDV+ +R I +IP+ L+ N Sbjct: 125 TGSAPQWLTELKIDGLAVNLLYRNGTLVRAATRGDGTTGEDVTHNVRTIASIPQQLTGEN 184 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 PE IE+RGEV+IS DF LN+ MIA G+ P+ANPRNAA+G LR+ + +R L+ + Sbjct: 185 HPEEIEIRGEVFISSADFEKLNESMIAAGKNPFANPRNAAAGSLRQKDAAITASRPLSMY 244 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 VHG+G + + QYE + G PV+ A + + N+ R +L ++I Sbjct: 245 VHGIGSRTGLDIATQYETYDLLASWGLPVSPYSEIAANTEAVFDFINKYGEQRHSLVHEI 304 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV++F+ Q QLG +R PRW +++K+ ++ T+LLDI + +GRTG +TP +E Sbjct: 305 DGIVIKVNDFATQAQLGYTSRVPRWAVAYKYPPEEVHTKLLDIRVDVGRTGRVTPYGVME 364 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G+ + ATLHN+D +K + + +GD V++++AG+VIP++V +V Sbjct: 365 PVFVSGSTVERATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVAPVVA 413 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R + F PS CP C S L P K G + RCT +C AQ ER+ + SR Sbjct: 414 LRDGTEREFVMPSECPSCGS----PLAPGKEGDV--DLRCTNPRSCPAQLTERVYYAASR 467 Query: 479 DAFNIEGLGKQQLDFFFKSEDP----------AFSIRIPADI--FTLQRRQQ---TSTTK 523 AF+IE LG + P FS+ I D+ T++R ++ T K Sbjct: 468 GAFDIEALGFEAAKALTSPATPHTPPLTTEAHLFSLNI-EDLREVTIEREKKVKGVGTGK 526 Query: 524 IENILGF------------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 +E + F + NL+ + K + L R + +L IRHVG AR+LA Sbjct: 527 MERVPYFYTKPTKARPEPKPTKNTLNLFAELEKAKQQPLWRVLVALSIRHVGPTAARALA 586 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + S Q A D L V VG IA +I+E++ + V++ Sbjct: 587 AEFGSMQ----------AIREADRERLAAVDGVGTTIADSIIEWFAEDWHAEVVDSWAAA 636 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 +++V +E +V TGTL R A+E + G S +S++T ++ G Sbjct: 637 GVRMEDTRDESVERTLEGLTVVVTGTLNGYTRDGAKEAIISRGGKASGSVSKRTHFVVAG 696 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 N GSKL+KAQQLG+K+++EE F LL+ Sbjct: 697 ANAGSKLDKAQQLGLKVLDEEGFTALLE 724 >gi|238063192|ref|ZP_04607901.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149] gi|237885003|gb|EEP73831.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149] Length = 702 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 239/715 (33%), Positives = 374/715 (52%), Gaps = 51/715 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR+ ++L QE++ H YY P + D+E+D R +A+ FP L P+ P Sbjct: 16 EARERHATLSQELTEHQYRYYVLDAPTVSDAEFDRQLRELEALEAEFPAL---RTPDSPT 72 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +IGG + VTH+ LSL+ + E+L + R+ ++ + + E K+D Sbjct: 73 QRIGGTFSTDFTPVTHAERMLSLDNAFADEELAAWAERV----ERDAGGPVPYLCELKVD 128 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIPEIIEVRGE 190 G I + YEKG+ V AA RGDG +GEDV+A +R+I +P L+ ++PE +EVRGE Sbjct: 129 GLAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIRDVPARLTPSDEFPDVPEFVEVRGE 188 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249 +Y F LN ++ G+ P+ANPRNAA+G LR+ +P +R L VHG+G Sbjct: 189 IYFPIAGFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGIGARRGY 248 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q E +R G P ++ R G+ + R + ++IDG+V KVD Sbjct: 249 TPTAQSESYAALRAWGLPTSDRWRVVPDLAGVAEFIAYYAEHRHDVEHEIDGVVVKVDPV 308 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 S+Q +LG +R+PRW I+ K+ ++ +T+LLDID+ +GRTG +TP A LEPV + G+ + Sbjct: 309 SIQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIDVNVGRTGRVTPFAILEPVLVAGSTVA 368 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + +V R G + +GD V++++AG+VIP+V+ +V+ R DA+PF Sbjct: 369 LATLHN---------AHEVERKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRPADARPFV 417 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + L P+ V RC +C AQ ER+ H R AF+IE LG + Sbjct: 418 MPTTCPACGT----PLRPEKEADVDI-RCPNSRSCPAQLRERVFHLAGRGAFDIEVLGYK 472 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ I D+F+L + + N G + L D++ R Sbjct: 473 GAAALLDAQ----VITDEGDLFSLDAERLAQSPFFVNKDGSLGSNAAKLLDNLAVARERD 528 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + L IRHVG A++LA+++ S I +++ LS V VG IA Sbjct: 529 LWRVLVGLSIRHVGPTAAQALARHFRSMA--------AIQEASEEELS--SVDGVGPTIA 578 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHK 665 +IV+++ + ++++ + + R + E +E +V TGTL R + Sbjct: 579 ASIVDWF----TVDWHREVVRKWAEAGVRMAEEAGDEGPRPLEGLTVVVTGTLSGFSRDQ 634 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A E + G V+ +S+KT ++VGDNPGSK +KA L V +++EE F LL Q Sbjct: 635 AAEAIQTRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKVPVLDEEGFRVLLDQ 689 >gi|223986795|ref|ZP_03636777.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM 12042] gi|223961228|gb|EEF65758.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM 12042] Length = 663 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/694 (33%), Positives = 372/694 (53%), Gaps = 47/694 (6%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 +L ++++ ++ Y+ P + D+EYD L R + P+L DPN P ++GG++ Sbjct: 8 ALRRQLNQYNYEYHVLDHPTVSDAEYDQLMRELITLEQQHPELF---DPNSPTQRVGGQV 64 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 K+TH P LSL ++N E+L +F + + + + + E KIDG +++ Sbjct: 65 LEEFNKITHKRPMLSLGDVFNKEELFEFARK-----AEAEVGPVDYCCECKIDGLAMSLN 119 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 Y+ G+F YA RGDG GEDV+ +R I +IP + + +EVRGEVY+ K F LN Sbjct: 120 YQGGRFQYAVTRGDGVVGEDVTHNVRTIKSIP--MEIEYEGELEVRGEVYMPKASFERLN 177 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 + G + +ANPRNAA+G +R+L+ +R L+ + + + ++ E L + Sbjct: 178 QKRRENGEEEFANPRNAAAGSIRQLDSKVAASRGLDALWYHVPQGPQLGHHQHSESLDFI 237 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 LGF +N R + + ++ +RS LPY+IDG+V KV+++ Q+QLG A++ Sbjct: 238 HSLGFRINPLNRLCRNIEEVWQFVEDLTLMRSDLPYEIDGIVIKVNDYEKQQQLGFTAKT 297 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 P+W I++KF ++A TRL +I + +GRTG +TP A+L PV + G + A LH+ED I+ Sbjct: 298 PKWAIAYKFPAEEAVTRLENIFVTVGRTGKITPNAQLTPVRLAGTSVGFAQLHDEDMIR- 356 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GD V+V +AG++IP++V + +R P+ FP CP+C + Sbjct: 357 ----------DKDIRIGDYVIVHKAGDIIPEIVASVPEKRDGLQVPYVFPKVCPVCGMPL 406 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 VR + A H C C A+ +E + HF SRDA NI+GLG ++++ F Sbjct: 407 VRYPDE------AHHFCINN-DCPARVVESIAHFCSRDAMNIDGLGVKRVELFHSQG--- 456 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + DI+ L+ +I G S NL ++I + SLE+ ++ LGIR Sbjct: 457 -WLNTVEDIYNLKDHYD----EILETPKMGKKSADNLLEAIENSKQNSLEKLLYGLGIRQ 511 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G + A+ LA + + Q Q + L + +G I AQ +++F+ + N Sbjct: 512 IGEKAAKILAYRFETMQALMQAT----------YEELEEIKDIGAITAQTVLDFFHDEAN 561 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 +EAL+ I E+ V + K +V TGTL + R +AQ + LGA VS + Sbjct: 562 QHLIEALIGHGLNMICLKEEQVETIFTGKTVVLTGTLATMTRPEAQALLEHLGATVSGSV 621 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 S++TD +I G+N GSKL KAQ LGV M E +F+ Sbjct: 622 SKRTDFVIYGENAGSKLTKAQSLGVATMTESEFM 655 >gi|150021387|ref|YP_001306741.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429] gi|190359297|sp|A6LN55|DNLJ_THEM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149793908|gb|ABR31356.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429] Length = 662 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 240/711 (33%), Positives = 383/711 (53%), Gaps = 57/711 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++E+ L +EI YH+ YY + PII D EYD L ++ + +P + PN Sbjct: 1 MKNIKEEIERLRKEIEYHNYRYYVLADPIISDEEYDRLLKKLIELEKKYPKFS---SPNS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P K+GG + KV H+ P LSL+ +N ++++F RI R + NS+ + E K Sbjct: 58 PTQKVGGGVISGFEKVEHTTPMLSLDNTYNETEIKEFDNRIKRLLNR---NSVEYVCELK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++IRYE G+F A RG+G G+D++ ++ I +IP L L IEVRGE+++ Sbjct: 115 IDGISVSIRYENGEFRQAISRGNGIIGDDITENVKKIKSIP--LRLFKKYTIEVRGEIFM 172 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 +F N G +P+ANPRNAA+G +R+L+ + + R L+ F++ + K Sbjct: 173 PIKEFEKYNKIAEEEGLQPFANPRNAAAGTIRQLDSSIVAKRNLDSFIYYIVNPENYSLK 232 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q+E L ++ LGF VN I+ ++ +M R L Y IDGLV KV+ F Q Sbjct: 233 TQWEALDFLKKLGFKVNRQSILCKNVECIIDFWKKMTKERKNLDYWIDGLVIKVNNFEFQ 292 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 K LGE ++SPRW I+ KF + T+++D+++ +GR+GI+TPVA EP+++ G ++ A+ Sbjct: 293 KILGETSKSPRWAIAFKFPAIKKKTKIIDVELNVGRSGIITPVAIFEPIDLDGTIVKRAS 352 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN +YI+ +DIR+GD V +++AG +IP+VV ++ +R + P Sbjct: 353 LHNFEYIQ-----------DKDIRIGDYVYIEKAGGIIPQVVSVVKEKRTGLEKEIKIPK 401 Query: 433 FCPICQSRVVRDLNPKTGKLVA---AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 CP+C N GKL A RC C + L+ FVS+ AF+I G+G++ Sbjct: 402 SCPVC--------NGPVGKLTEDEIAIRCLNP-HCPQKLKRHLEIFVSKSAFDISGIGEK 452 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D A I+ ADIF L + + I G G S+ + + I K + Sbjct: 453 IIDKIV----DAKLIKDIADIFYL------TPFDLAQISGLGQKSIAKILEQIEKSKKTP 502 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R I LGI VG + ++ L A++ NI ++ + LI++ +G IA Sbjct: 503 LNRVIVGLGIPMVGEKTSKIL----------AEKFKNIEKLSSATYDELIKIENIGPEIA 552 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQRHKAQ 667 ++IV ++QN + + L K + EK+V + K L F TG L+ R + + Sbjct: 553 KSIVTYFQNEKTKEIINKLKK---AGVNLEEKDVKKSDKLKGLTFAITGKLKSYTREEIK 609 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + + G VS +S KT+ +I G+ PGSKLEKA++L +KI++EE FL L+ Sbjct: 610 KIIEENGGKVSNSVSSKTNFLIAGEEPGSKLEKAKRLNIKIISEEDFLKLI 660 >gi|89896634|ref|YP_520121.1| hypothetical protein DSY3888 [Desulfitobacterium hafniense Y51] gi|122997178|sp|Q24QL5|DNLJ_DESHY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89336082|dbj|BAE85677.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 659 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 236/702 (33%), Positives = 370/702 (52%), Gaps = 51/702 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + +L ++I + YY +P + D+EYDAL + + P+ P+ P ++ Sbjct: 6 QRIEALREQIEEANYQYYGLDQPTLSDAEYDALLQELIRLEKEHPEFL---TPDSPSQRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + KV H+ LSL+ ++ DL +F R+ + + + +E KIDG Sbjct: 63 GGYIAKEFPKVRHAEALLSLDNAFDAGDLLEFDRRVRALVAE-----VEYVVELKIDGLT 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + YE G V A RGDG GE+++A ++ IP IP L + ++VRGE Y+ K F Sbjct: 118 VALTYEDGALVRGATRGDGEVGEEITANLKTIPAIPLRLRKQA-DRLDVRGEGYMPKGSF 176 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYE 256 L LN E G+ +ANPRNAA+G LR+L+ + IT R L +F + + E Q Sbjct: 177 LRLNQEREEAGQPLFANPRNAAAGSLRQLD-SRITAQRKLGYFAYQVLTPEEGELASQTA 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L ++ GF VN R + +++Y EM R PYDIDGLV KV++ + Q++LG Sbjct: 236 VLDYLKEQGFSVNPEYRVFSAIEEVIAYCGEMVEKRHNYPYDIDGLVIKVNDIAQQRELG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF +Q T + DI I++GRTG+LTP A L PV + G+ + ATLHN Sbjct: 296 FTAKSPRWAIAYKFPAEQVETVVEDIVIRVGRTGVLTPTAYLTPVFVAGSTVGRATLHNL 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ +D+R+GD VL+++AG+VIP+VV I+ +R + F P CP Sbjct: 356 DNIR-----------AKDVRIGDHVLIQKAGDVIPEVVKILPEKRTGGERIFEMPELCPE 404 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS V+R+ AAHRCT + C A+Q E + HFVSR+A NI+GLG + + Sbjct: 405 CQSPVIREEGE------AAHRCT-SITCPARQREAIIHFVSRNAMNIDGLGPAVIYQLLE 457 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A I+ AD++ L+ ++ G S NL +I + L IF Sbjct: 458 ----AGLIKDAADLYALEYDALVPLERL------GKKSAENLLKAIEDSKERGLAPLIFG 507 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG + + LA+ Y + ++ L +P VG +AQ++ +F+ Sbjct: 508 LGIRHVGEKAGKILAQKYGTMEDL----------EKAQVEELQEIPDVGPAMAQSVAQFF 557 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 Q + L++ + K +V TG+LQ+ RH + + + G Sbjct: 558 QQESTHHFLNK-LRQAGVVMSAQHSAKPQIFAGKSIVVTGSLQRWDRHYVETMIEEFGGK 616 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ +S+KT ++ G+ GSKL KA++LG+ +++EE+F LL Sbjct: 617 AASSVSKKTAFVVAGEKAGSKLAKAKELGIPVLSEEEFAELL 658 >gi|330718928|ref|ZP_08313528.1| DNA ligase, NAD-dependent [Leuconostoc fallax KCTC 3537] Length = 681 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 250/716 (34%), Positives = 383/716 (53%), Gaps = 61/716 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ QA++E++ L+ +++ + YY+ P + D YDA R + AFP Sbjct: 8 VSELTTAQAQQEIAKLQDDLTRYGVEYYEDDNPSVEDHVYDAFYARLVDLEAAFPQFMT- 66 Query: 69 EDPNGPLNKIGG-EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P P ++GG + L K+TH +P LSL ++++E+L+ + R + + D Sbjct: 67 --PESPTQRVGGTNVKSELTKITHPVPMLSLGDVFSLEELQDWDARTTKALGFQSD---- 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + LE KIDG + + YE G+ V A+ RG+G GEDV+A ++ I IP+ LS P IEV Sbjct: 121 YNLELKIDGLAVALDYENGELVQASTRGNGTIGEDVTANVKTIQAIPQRLSE--PLTIEV 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGE+Y+ K F LN + G P+ANPRNAA+G LR+L+ R L+ FV+ Sbjct: 179 RGEIYMPKKSFAKLNQQRELEGLAPFANPRNAAAGSLRQLDAKVTKKRELSAFVYYTADF 238 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + A+ Q LQ+ LG P N + + I SY R TL Y IDG+V KV Sbjct: 239 ETLGAETQSGALQRFAALGLPTNTTNQVISVMSYISSYITHYTQQRDTLDYGIDGVVVKV 298 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + LQ LG + PRW I++KF ++A T + DI+ +GRTG +TP A ++PV + G Sbjct: 299 NALDLQLDLGNTVKIPRWAIAYKFPPEEALTTVRDIEWTVGRTGAVTPTAVMDPVQLAGT 358 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ A+LHN DY L+A G IR+GD V + +AG++IP+V +I +R D+ Sbjct: 359 VVKRASLHNPDY---LNAKG--------IRIGDTVTLHKAGDIIPEVGQVIEEKRSIDSV 407 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ P CP CQS +V G++ A RC CSAQ ERL HF SR+A NI+G+ Sbjct: 408 PYVIPVMCPACQSELVH----IEGEV--ALRCINPF-CSAQIQERLTHFASRNAMNIDGM 460 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + K+ I+ A I+ L+ Q S K F + S NL+++I + + Sbjct: 461 GPRVIAQLLKNN----LIQDVASIYALKEEQLLSLDK------FKEKSANNLFNAIQQSK 510 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 SLER +F LGIR VGA+ A+ +AK + + IA + +G Sbjct: 511 QNSLERLLFGLGIRMVGAKAAKLIAKKFKDLTQLMHTTSADIAS----------IDGIGS 560 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIE------NKKLVFTGTLQ 659 IA ++V+F+ P+ V+ L+ + G + K +S EI+ KK+V TG L+ Sbjct: 561 TIADSMVQFFSTPQAQQLVQDLM-----AAGVNGKYLSDVEIDENSFFFGKKIVLTGKLE 615 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 ++ R +++ GA V +S KTD++I G + GSKL+KA LG+ + E+QF+ Sbjct: 616 QMSRPVIAKWLENHGASVVGSVSAKTDLVIAGHSAGSKLDKATGLGIPVWQEQQFI 671 >gi|218439827|ref|YP_002378156.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424] gi|254781306|sp|B7K8U0|DNLJ_CYAP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218172555|gb|ACK71288.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424] Length = 678 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 246/722 (34%), Positives = 387/722 (53%), Gaps = 58/722 (8%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 +P I+Q +L S Q+ SY YY PI+ D YD L R I +P+L Sbjct: 1 MPSATPEIKQRVDQLRSQLQKASY---AYYVLDNPIMEDVVYDQLYRELQNIETQYPELI 57 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK--KDDN 124 P+ P ++G +++ V H+IP SLE +N+++ ++ R WQ+ D Sbjct: 58 ---TPDSPTQRVGDKLSEQFISVNHNIPLYSLENAFNLQEFARWQER----WQRLTPDVT 110 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + E KIDG+ I + YE G V RGDG GE+++ I+ I +IP L+L+ P + Sbjct: 111 QFEYVCELKIDGSAIALTYENGLLVRGVTRGDGIVGEEITPNIKTIRSIPLKLALDNPPV 170 Query: 185 -IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHG 242 IEVRGE ++ +F +N E G +ANPRNAA+G LR+L+P + R L FF + Sbjct: 171 RIEVRGEAFLPIEEFERINQEKQTAGESLFANPRNAAAGTLRQLDPRIVDRRRLQFFAYT 230 Query: 243 LGKT-SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 L S Q+E L+ ++ +GF VN + + + YY + R LPY DG Sbjct: 231 LYVIDSPSTPTTQWESLEDLQQMGFLVNPNRKLCQSEAEVDQYYQLWDTERHNLPYMTDG 290 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V K++++ LQ+QLG + PRW I+ K+ ++A T++ +I + +GRTG +TP+A +EPV Sbjct: 291 VVVKLNDYQLQQQLGFTQKFPRWAIALKYPAEEAPTQVKNITVNVGRTGAVTPMAIMEPV 350 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G + ATLHN D + L DIRVGD V++++AGE+IP+VV +I R Sbjct: 351 QLAGTTVQKATLHNSDRVAQL-----------DIRVGDTVIIRKAGEIIPEVVRVIEELR 399 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P+ QP+ P+ CP C S +VR PK G+ A RC +C A L H+ SRDA Sbjct: 400 PPNTQPYQMPTQCPECHSTLVR---PK-GE--AVTRCVNS-SCPAILRGSLVHWCSRDAL 452 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I GLG++ + D I AD++ L+ Q I ++ G S NL ++ Sbjct: 453 DIRGLGEKVVILLI---DNGLVHSI-ADLYHLKVEQ------IASLERMGTKSANNLINA 502 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 INK + R ++ LGIR+VG+ A+ L+ + S + +Q + SL V Sbjct: 503 INKSKQQPWSRVLYGLGIRYVGSVTAKLLSDNFKSVEQLSQA----------SFTSLESV 552 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTG 656 +G IAQ++ ++++ N ++ L + E ++ S+ + K +V TG Sbjct: 553 YGIGAEIAQSVYDWFKIEANQTLIKNLQQAELQFETLSETPKYPPISSTPLAGKTVVITG 612 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R++AQE + + G V+ +S KTD ++VG++ GSKL KAQQLG+ ++EEQ L Sbjct: 613 TLPSLKRNEAQELIEKAGGKVTNSVSSKTDYLLVGEDAGSKLTKAQQLGISQLSEEQLLK 672 Query: 717 LL 718 ++ Sbjct: 673 MI 674 >gi|257865964|ref|ZP_05645617.1| DNA ligase [Enterococcus casseliflavus EC30] gi|257872297|ref|ZP_05651950.1| DNA ligase [Enterococcus casseliflavus EC10] gi|257799898|gb|EEV28950.1| DNA ligase [Enterococcus casseliflavus EC30] gi|257806461|gb|EEV35283.1| DNA ligase [Enterococcus casseliflavus EC10] Length = 676 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 250/715 (34%), Positives = 391/715 (54%), Gaps = 65/715 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q+R E L +++ + YY +P + D YD L I +P L +ED P Sbjct: 9 QSRAE--ELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIETNYPQLV-TED--SPT 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + KVTH IP SL +++ E + F R+ QK ++ + E KID Sbjct: 64 QRVGGIILPGFEKVTHDIPLYSLNDVFDKEGIVAFDARV----QKALGKAVDYVCELKID 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I+++YE+G+FV A RGDG GE+++ ++ + +IP L L P +EVRGE Y+ K Sbjct: 120 GLSISLKYEEGRFVRGATRGDGTVGENITENLKTVKSIP--LKLKEPISLEVRGECYMPK 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKG 253 FL LN + G + +ANPRNAA+G LR+L+ T I R L+ F++ L I A Sbjct: 178 ASFLKLNQQREEEGAEVFANPRNAAAGSLRQLD-TRIAAQRNLSTFLYTLADFGPIEAND 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q+ L ++ LGF N+ R +T + +Y E RS LPY+IDG+V KV+ F Q Sbjct: 237 QFSALNELDQLGFRTNHERRVCHTIDEVWAYIEEFHDKRSELPYEIDGVVIKVNNFKDQD 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG ++PRW ++KF ++A T + I+ +GRTG++TP A + PV + G ++ A+L Sbjct: 297 ALGFTVKAPRWAAAYKFPPEEAETVIETIEWTVGRTGVVTPTAVMTPVRVAGTTVSRASL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D+IK +DIR+GD V++ +AG++IP+V ++ +R +Q F P+ Sbjct: 357 HNVDFIK-----------MKDIRIGDSVIIYKAGDIIPEVAKVLEEKRTEASQSFESPTH 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S ++ L+ + A RC C AQ E L HFVSR+A NI+GLG + L+ Sbjct: 406 CPECGSELIH-LDEEV-----ALRCINP-KCPAQIKEGLSHFVSRNAMNIDGLGPRVLEQ 458 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F D + ++ AD++ L Q + KI+ + S NL +I++ + S+ER Sbjct: 459 MF---DKSL-VKDVADLYFLTEEQLLTLDKIK------EKSANNLLRAIHQSKGNSVERL 508 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF LGIRHVGA+ AR LA+++ ++ A + +I + +G IA+++V Sbjct: 509 IFGLGIRHVGAKAARILAEHF----------GDLRALSKAKEEEIISLEAIGATIAESVV 558 Query: 614 EFYQNPRNICAVEALLKEVSPS------IG-RHEK--NVSSEIENKKLVFTGTLQKIQRH 664 ++ N V LL E+ + +G R+E+ +V S + K +V TG L R Sbjct: 559 TYFDNQE----VHDLLDELERAGVNFAYLGLRNEQLEDVESPFKEKTVVLTGKLSHFTRE 614 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+E + LG V+ +S+KTDI++ G+ GSKL KAQ LGV + +E Q + ++ Sbjct: 615 EAKERIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGVTVWDEAQMVAAIE 669 >gi|257869253|ref|ZP_05648906.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2] gi|257803417|gb|EEV32239.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2] Length = 676 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/723 (33%), Positives = 391/723 (54%), Gaps = 64/723 (8%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + + ++Q +EL + + +Y YY +P + D YD L + + +P L Sbjct: 1 MAVPSTEVQQRAEELRTTLNQYAYE---YYVKDQPSVEDYVYDRLYKELVQLETDYPQLV 57 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 +ED P ++GG + KV H IP SL +++ E++ F R+ QK ++ Sbjct: 58 -TED--SPTQRVGGIVLPGFEKVIHDIPLYSLNDVFDKEEIIAFDARV----QKALGRAV 110 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + E KIDG I+++YE G+FV A RGDG GE+++ ++ + +IP L L P +E Sbjct: 111 DYVCELKIDGLSISLKYENGRFVRGATRGDGTVGENITENLKTVKSIP--LKLKEPVSLE 168 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 VRGE Y+ K F+ LN G + +ANPRNAA+G LR+L+ +R L+ F++ L Sbjct: 169 VRGECYMPKASFIRLNQVREEEGLEVFANPRNAAAGSLRQLDTRIAASRNLSTFLYTLAD 228 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 I A Q+ L ++ LGF N+ R T + +Y E RS LPY+IDG+V K Sbjct: 229 FGPIEAHDQFSALDELDSLGFRTNHERRLCRTIDEVWAYIEEFHEKRSELPYEIDGVVIK 288 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++FS Q LG ++PRW ++KF ++A T + +I+ +GRTG++TP A + PV + G Sbjct: 289 VNDFSDQDTLGFTVKAPRWAAAYKFPPEEAETTIEEIEWTVGRTGVVTPTAVMTPVRVAG 348 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A+LHN DYI+ +DIR+ D V++ +AG++IP+V +++ ++R + Sbjct: 349 TTVSRASLHNVDYIR-----------AKDIRLNDSVIIYKAGDIIPEVANVLTDKRSKAS 397 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +P+ P+ CPIC S +V L+ + A RC C AQ E L HFVSR+A NIEG Sbjct: 398 EPYPIPTHCPICDSELVH-LDEEV-----ALRCINP-KCPAQMKEGLSHFVSRNAMNIEG 450 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + L+ ++ + AD++ L Q + KI+ + S N+ +I Sbjct: 451 LGPRVLEQMYEKH----LVADVADLYYLTEEQLLTLDKIK------EKSANNILSAIEAS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + S+ER IF LGIRHVG++ AR LA++Y + +N ++ D ++ + +G Sbjct: 501 KENSVERLIFGLGIRHVGSKAARILAEHYRNLRNLSKA----------DESEIVSLETIG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVS---SEIENKKLVFTG 656 IA ++V ++ N V LL E+ + +G + +S S + K +V TG Sbjct: 551 QTIADSVVTYFNNEE----VHDLLDELEKAGVNFDYLGLKNEELSAIDSPFKGKTVVLTG 606 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L R +A+E + LG V+ +S+KTDI++ G+ GSKL KAQ LG+ + E Q + Sbjct: 607 KLTHFTREEAKERIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQSLGITVWEENQMVA 666 Query: 717 LLQ 719 ++ Sbjct: 667 AIE 669 >gi|110597868|ref|ZP_01386151.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031] gi|110340593|gb|EAT59076.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031] Length = 674 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 240/715 (33%), Positives = 380/715 (53%), Gaps = 60/715 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A +E+ L +EI H+ YYQ +KP I D ++D L + A+ FPDL P+ P Sbjct: 7 ASEEILRLRREIERHNRLYYQEAKPEISDYDFDLLLEQLVALEQQFPDLV---TPDSPSQ 63 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + V H P LSL ++ E++ +F R+ + + E K DG Sbjct: 64 RVGGTITKEFTAVRHREPMLSLSNTYSPEEVEEFCNRLRKLLLLEGVQEQEMVAELKFDG 123 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-------EIIEVRG 189 +T+ Y V A RGDG G++++ ++ I TIP L ++ IEVRG Sbjct: 124 VAVTLLYRDALLVQGATRGDGVQGDNITVNLKTIATIPLRLEGSLAGELQGEGREIEVRG 183 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLG- 244 EVY+ K DF LN+ R +ANPRNA +G L+ + ++ R ++ +++ GLG Sbjct: 184 EVYMPKLDFEHLNETRPEEDR--FANPRNATAGTLKLQDSAEVARRRLSFVAYYLKGLGD 241 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 +T+ F++ L+ + LGF R + I + E R LPY+ DG+V Sbjct: 242 ETASHFSR-----LKMLERLGFHTGGHYRLCREQNEINRFIEEWTERRWKLPYETDGVVL 296 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+++ L ++G A+SPRW I++K+ +QA+T LLD+ Q+GR G +TPVA L+PV + Sbjct: 297 KLNDVRLWDKIGATAKSPRWAIAYKYPAQQAATELLDVLFQVGRLGTITPVAELKPVLLA 356 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ ++ +TLHN D I+ L + V DRV++++AGEVIPKV+ +++ ER D Sbjct: 357 GSTVSRSTLHNFDEIERL-----------GLMVHDRVVIEKAGEVIPKVISVVLAERPVD 405 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+P + P CP C + + + N + C C AQ RL HF SR+A +I+ Sbjct: 406 AEPIAVPVVCPECNTPLEKPENE------VSWYCPNEAECPAQIRGRLLHFASRNAMDIK 459 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 LGK +D + +R D++ LQ Q +EN+ G S NL ++ + Sbjct: 460 TLGKALVDQLVGMK----LVRDVGDLYLLQEPQ------LENLERMGRKSAQNLVRALAE 509 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R S ER +++LGIRHVG AR L+ Y S +++ +++ LS VP V Sbjct: 510 SREKSYERLLYALGIRHVGRATARELSAAYPSL--------DLLRQASEEELST--VPDV 559 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 G I+A++IV+F+ P + E L + V S + V+ E ++FTG L++ R Sbjct: 560 GPIVARSIVDFFAKPSSAALFETLREAGVQVSAAGKPEQVNRNFEGISVIFTGGLERYDR 619 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 KA E V + G V +S+KT +++ G +PGSKLEKA +LGV+++ E++F +L Sbjct: 620 QKATELVIERGGRVVGSVSKKTGLVVAGHDPGSKLEKALKLGVRVVTEDEFDAML 674 >gi|323341293|ref|ZP_08081538.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644] gi|323091287|gb|EFZ33914.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644] Length = 671 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 237/720 (32%), Positives = 400/720 (55%), Gaps = 67/720 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+A+KEL SL ++++ YY P + D YD +R + FP+L + P+ Sbjct: 4 EEAKKELESLREKLTKWSREYYVLDAPTVEDHVYDENYKRLLELEAKFPELVTKDSPS-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG++ + KV H IP LSL +++ E+L F+ R+ + + E KI Sbjct: 62 -QRVGGKILTNFTKVEHEIPMLSLGDVFSKEELADFVKRL----NENAGADFGYNCELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I++ YE G FV + RG+G GED++ ++ I +P L LN +EVRGE Y+ Sbjct: 117 DGLAISLTYEDGIFVKGSTRGNGTIGEDITENLKTINAVP--LKLNEKISVEVRGECYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252 K F+ LN + A G+ +ANPRNAA+G LR+L+ + IT R L+ F++ L + + K Sbjct: 175 KKSFVDLNKKREAEGQPVFANPRNAAAGSLRQLD-SKITAERNLSIFIYYLMEPEKFGVK 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L+KM GF VN R +T I +Y +E ++ R+ L YDIDG+V K + F++ Sbjct: 234 TQSEALKKMASWGFRVNGESRVCSTMDEIDAYLDEYQAKRAGLEYDIDGIVLKAEPFTVH 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + +G + PRW I++KF + T + DI+ +GRTG++TP A ++PV + G ++ A+ Sbjct: 294 ELVGNTVKVPRWAIAYKFPPDEQETIVRDIEWTVGRTGVVTPTAVMDPVLLAGTTVSRAS 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DY+ + IR+ D V + +AG++IP++ ++++ +R D++P+ P+ Sbjct: 354 LHNPDYL-----------NEKGIRLLDTVKLHKAGDIIPEISEVVLEKRPEDSKPYEIPT 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +++V L+ + AA RC C A E L HF S++A NI+GLG + ++ Sbjct: 403 NCPECDAKLVH-LDDE-----AALRCINP-KCKALMKESLTHFASKNAMNIDGLGPKIIE 455 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F+ I +D++ L K + + S +NL ++I+ R SLER Sbjct: 456 QLFER----GMINDVSDLYKLTFDDLLLLDKFK------EKSASNLLNAIDASRKNSLER 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRHVGA+ A+ LA+ +++ A+ I + + +G+ IA ++ Sbjct: 506 LLFGLGIRHVGAKAAKLLAERFMTMDALAKASKEEI----------VAIETMGETIADSL 555 Query: 613 VEFYQNPRNICAVEALLKEVSPSIG---RHEKNVSSEIENK---------KLVFTGTLQK 660 ++ N LL+E+ S+G + ++E+E +V TGTL++ Sbjct: 556 STYF----NSEGANELLEELK-SVGVNMSYLGKTAAELEEAASGSAFNGLTVVLTGTLER 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++R A++++ + GA V+ +++KT+++I G + GSKL KA++LG KIMNEE+FL +++ Sbjct: 611 LKRSDAKKWLEEHGAKVTGSVTKKTNLLICGHDAGSKLTKAKELGTKIMNEEEFLQKMEE 670 >gi|59800688|ref|YP_207400.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090] gi|75356380|sp|Q5F9Z9|DNLJ_NEIG1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|59717583|gb|AAW88988.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090] Length = 823 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 275/844 (32%), Positives = 413/844 (48%), Gaps = 176/844 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P I D+EYD L R +A+ P+L + P+ P ++G Sbjct: 10 ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F Q+ D + + +EPK Sbjct: 64 GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N+PE+IEVRGEV Sbjct: 124 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEVRGEVL 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEI 249 + K DF ALN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + + Sbjct: 184 MLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGL 242 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ + L + LGF + NG F I +++Y M+ R LPY+IDG V KV Sbjct: 243 IAEEHIQELAYFQALGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 300 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 301 NSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 360 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 361 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 409 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 410 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 465 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 466 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 519 Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549 TLQ+ ++T+ EN G GD+S N+ I + Sbjct: 520 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 579 Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577 L RF+F+LGIRHVG +ARS+A ++ Sbjct: 580 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 639 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615 + A I+ ++A + +P + + AQA+ E Sbjct: 640 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 698 Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654 +Q R+ ALL+ + PS + ++ + K V Sbjct: 699 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 758 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + Sbjct: 759 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGETAGSKLEKANALGVSVLSEAEL 818 Query: 715 LFLL 718 L LL Sbjct: 819 LTLL 822 >gi|332880018|ref|ZP_08447702.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682014|gb|EGJ54927.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 663 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 237/706 (33%), Positives = 374/706 (52%), Gaps = 51/706 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L +E++ H+ YY P I D E+D + A+ A P+ D N P + Sbjct: 2 KEKIQQLREELNQHNYNYYVLDTPTISDFEFDQKLKELQALEQAHPEYY---DENSPTVR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + + V H SL+ ++ EDL ++ RI + + I FT E K DG Sbjct: 59 VGGTITKNFPTVVHEYRMYSLDNSYSKEDLEEWEQRIIKTL---GSDQINFTCELKYDGA 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I + YE GK A RGDG G+D++A +R I ++P L + PE +RGE+ + K Sbjct: 116 SIDLLYENGKLKQATTRGDGIQGDDITANVRTIGSVPLQLKGDYPERFYIRGEIVMPKKA 175 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F ALN E +A G P+ NPRN ASG L+ + ++ R L+ ++ L + I K Q+E Sbjct: 176 FEALNKERVAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGDTGI--KSQFE 233 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K R GF V N + ++ ++ + NE S R TLPY+ DG+V KVD + Q++LG Sbjct: 234 GLEKARAWGFKVPNISKLCHSTAEVMDFINEWDSKRHTLPYETDGVVVKVDSIAQQEELG 293 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW +++KF +Q T L I Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 294 YTSKSPRWAMAYKFKAEQVDTLLESISYQVGRTGAITPVANLQPVLLAGTIVKRASLHNA 353 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DI +GD V V++ GE+IPK+V + + +R +A+ + + CP Sbjct: 354 DQIEKL-----------DIHIGDSVYVEKGGEIIPKIVGVNLEKREANAEKVQYITHCPE 402 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +VR+ A H C +C Q +++HF+SR A +IEGLG++ ++ F+ Sbjct: 403 CGTALVRNEGE------AQHYCPNSNSCPPQITGKIQHFISRKAMDIEGLGEETVELLFR 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A I AD++ + + K+ + S N+ I K + I ER +F+ Sbjct: 457 ----AGIIHTYADLY------EVTVAKLLPLERMAQKSAENIVKGIEKSKEIPFERVLFA 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR+VG +A+ LA++Y + + A E I LI V +G+ IA ++V F+ Sbjct: 507 LGIRYVGETVAKKLARHYKTIE--ALEAATI--------EQLIEVDEIGNQIASSVVSFF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQEYVTQL 673 + N +E LK E+ + + K V +G R + + + Q Sbjct: 557 ADAYNRALIER-LKGYGLQFALSEQATEGQTDKLKGLTFVVSGVFHLHSRDELKTLIEQH 615 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G V + +S KT +IVGDN G SK EKA+ LGVK+++EE+F L+ Sbjct: 616 GGKVGSSISSKTSYVIVGDNMGPSKKEKAESLGVKMISEEEFEALI 661 >gi|328887795|emb|CAJ70206.2| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Clostridium difficile] Length = 674 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 233/707 (32%), Positives = 387/707 (54%), Gaps = 52/707 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 + E++ L + I+YH++ YY P I D EYD L + ++ P+L R + P N Sbjct: 3 VKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKR---IDSPTN 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG+ ++ H P LSL ++ +DLR F R+ + + ++ + +E KIDG Sbjct: 60 RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKIDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + Y G+F A RGDG GED+S + + +IP L +N + + VRGEVYISK+ Sbjct: 116 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 173 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 +F +N++ + +ANPRN A+G LR+L+P R L+ FV + E + Sbjct: 174 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHS 233 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+ + LGF V+ + + ++ + R L Y+IDG+V KV+ + ++ Sbjct: 234 ESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEM 293 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++ T+++DI +++GRTG +TP A LEPV + G ++ ATLHN Sbjct: 294 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 353 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 EDYI+ +DI++ D VLV++AG++IP+V+++I ER D F P CP Sbjct: 354 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 402 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C +R G+ AA +C ++C AQ + HFVSRDA NI+GLG+ + Sbjct: 403 VCSEPTIR----LEGE--AAVKCI-NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 455 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 +I D+ L ++ +E + G+ S NL +SI K + L R I Sbjct: 456 NE-------KIIQDVSDLYYIKKEDVVDLERM---GEKSADNLINSIEKSKENDLWRLIN 505 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGI+ +G + A+ LA NF ++++ +I+ ++ L + G I+A ++VEF Sbjct: 506 GLGIKFIGVKAAKILA------YNF-KDLDEVISATSE---QLEELEEFGSIMANSVVEF 555 Query: 616 YQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ +N+ + LK V + S+ + V E K+V TGTL ++R+ A+E + + Sbjct: 556 FKEDKNMNVINK-LKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKEMIEK 614 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL LL+ Sbjct: 615 RGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 661 >gi|325137931|gb|EGC60506.1| DNA ligase, NAD-dependent [Neisseria meningitidis ES14902] Length = 841 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 268/825 (32%), Positives = 405/825 (49%), Gaps = 169/825 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV + K DF ALN Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y +M+ R LPY+IDG+V KV+ + Q++LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D + Sbjct: 338 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++T+ T Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556 Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562 + + SV N+ I + L RF+F+LGIRHV Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPELARFLFALGIRHVGERTAK 616 Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 G +ARS+A ++ + A I+ ++A Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675 Query: 597 SLIRVP-----------------LVGDIIAQAIVEF-----------------YQNPRNI 622 + +P + + AQA+ E +Q R+ Sbjct: 676 QAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEGLQTDKALPTDWQAWRSE 735 Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ALL+ + PS + ++ + K V TGTL ++R +AQ + Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840 >gi|269216606|ref|ZP_06160460.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122] gi|269130135|gb|EEZ61217.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122] Length = 709 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 246/728 (33%), Positives = 388/728 (53%), Gaps = 58/728 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +AL + R + +L +EI +H YY P I D+ +D+L R + A P+L Sbjct: 12 QALDADGTRARVRALRKEIEHHTYLYYAKDAPEISDAAFDSLMRELRELEQAHPELI--- 68 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 DP P ++GG + V H++ SL+ +E+L +++ R + + + F Sbjct: 69 DPTSPTQRVGGYVGEQFSPVRHAVRMYSLDNAMGLEELDEWLARTV----EAIGHPVPFC 124 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------SLNIPE 183 E KIDG+ I + YE G AA RGDG +GEDV+ +R + IP L L P+ Sbjct: 125 CELKIDGSSIALTYEAGVLTKAATRGDGTTGEDVTVNMRTVRDIPLRLRDAGIEGLVDPD 184 Query: 184 I-IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFV 240 IEVRGEVY+ K F +LN A GR+ +ANPRNAA+G LR+ +PT +T R L+ F+ Sbjct: 185 ASIEVRGEVYMPKRSFESLNAAAAAQGRQGFANPRNAAAGSLRQKDPT-VTQGRDLSTFL 243 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + + + + A+ Q+++L+ + GF VN V++ +T + + E+ R +LPY ID Sbjct: 244 YAIADDAPVRAESQWDLLKWLGDCGFHVNPDVKRCDTPEEVHRFCEEVADRRDSLPYGID 303 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KVD F++Q+++G AR+PRW I++KF ++ +T L DI +Q+GRTG +TPVA L+P Sbjct: 304 GVVVKVDSFAIQREMGFTARAPRWAIAYKFPPEEKTTVLRDISVQVGRTGAITPVAELDP 363 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G+++ ATLHN D +V R +D+RVGD ++V++AG+VIP+V+ +++ Sbjct: 364 VRVDGSVVARATLHNLD---------EVHR--KDVRVGDTIIVRKAGDVIPEVLGPVLSL 412 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R A P+ P+ CP C S +VR+ AA RC + C AQ ERL H+ SR A Sbjct: 413 RPEGAIPWEMPAMCPSCGSPLVREDGE------AAFRCV-SIDCPAQATERLIHWASRGA 465 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-----TTKIENILGFGDVSV 535 +I+G+G++ + +S + AD ++L + T K + G Sbjct: 466 MDIDGMGEEIVARLVES----GRLTDVADYYSLSEYDLATLETGRTNKEGEPVHLGSTIA 521 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 L SI + R +F LGIRHVG +A Y S ++ ++ + +D Sbjct: 522 AKLIASIEASKARPFGRVLFGLGIRHVGKTTGAQIAAAYPS-------MDALMRASEED- 573 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLV 653 L + VG IIA++I F + P N + L L + ++V + V Sbjct: 574 --LAAIDGVGGIIAKSIRAFLETPDNREVIHRLGVLGVRMEDVRTEGEDVPQTLAGITFV 631 Query: 654 FTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 TG+L + R +A + +GA VS +S+KT +I G+ GSK +KA LGV +++E Sbjct: 632 LTGSLVESGMTRDEAGSRLKAMGAKVSGSVSKKTGYVIAGEAAGSKYDKAVALGVPVLSE 691 Query: 712 EQFLFLLQ 719 L LL+ Sbjct: 692 ADLLRLLE 699 >gi|149928191|ref|ZP_01916436.1| DNA ligase (NAD+) [Limnobacter sp. MED105] gi|149823082|gb|EDM82322.1| DNA ligase (NAD+) [Limnobacter sp. MED105] Length = 597 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 216/545 (39%), Positives = 320/545 (58%), Gaps = 34/545 (6%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P + DSEYD + R I + P+L +++ P ++GG+ +V H + Sbjct: 40 AYYVLDAPEVPDSEYDKVYRSLQQIENNHPELIQNDSPT---QRVGGKPADGFEQVRHRV 96 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL + D+ F R+ D +I + ++PK DG I+I Y G F A Sbjct: 97 PMLSLGNAFEDSDVLAFDRRVKELADLPIDTTIAYAVDPKFDGLAISIHYTNGMFDQAIT 156 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG GEDVSA ++ I ++P L ++ P +E+RGE++++K DFL +N +G K Sbjct: 157 RGDGTVGEDVSANVKTIRSLPLKLKGSVVPAHLEIRGEIFMTKKDFLQMNQRQAELGLKV 216 Query: 213 YANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF--AKGQYEMLQKMRCLGFPVN 269 +ANPRNAA+G +R+L+P +R L F+ +G E K Q M++ + LG PV+ Sbjct: 217 FANPRNAAAGTIRQLDPKVAASRPLRFYCYGAALEREQLRELKSQSAMMKWLAALGLPVS 276 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 + A G++S+Y + RSTLP++IDG+VYKVD F LQ QLG A++PR+ ++HK Sbjct: 277 ELSQTATGAEGLLSFYRSVGGRRSTLPFEIDGVVYKVDSFDLQDQLGYVAKAPRFAVAHK 336 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 F + +RLL+I++Q+GRTG +TPVA+LEPV +GG ++++ATLHN D I+ Sbjct: 337 FPPDEVLSRLLNIEVQVGRTGSITPVAKLEPVKVGGVVVSSATLHNLDEIQ--------- 387 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449 +D+RVGD+VLV+RAG+VIP+V+ N+R P + F P+ CPIC S V ++ Sbjct: 388 --RKDLRVGDQVLVRRAGDVIPEVLPFPGNQRSPVSSAFVMPTHCPICNSLVRKEEGE-- 443 Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509 AA RCTGGL C AQ + + HF R A +IEGLG + ++ E ++ PAD Sbjct: 444 ----AAFRCTGGLVCKAQLTQSIIHFAHRRAIDIEGLGSKLVEVLVDKE----WVKTPAD 495 Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 +F L+ + ++E + GD S NL DSI+K + + RF+F LGIRHVG AR Sbjct: 496 LFRLEF---DALVQLERM---GDKSARNLLDSIDKAKQTTFGRFLFGLGIRHVGEATARD 549 Query: 570 LAKYY 574 LA Y+ Sbjct: 550 LAAYF 554 >gi|240115079|ref|ZP_04729141.1| putative DNA ligase [Neisseria gonorrhoeae PID18] gi|240125172|ref|ZP_04738058.1| putative DNA ligase [Neisseria gonorrhoeae SK-92-679] gi|240127627|ref|ZP_04740288.1| putative DNA ligase [Neisseria gonorrhoeae SK-93-1035] Length = 823 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 275/844 (32%), Positives = 413/844 (48%), Gaps = 176/844 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P I D+EYD L R +A+ P+L + P+ P ++G Sbjct: 10 ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F Q+ D + + +EPK Sbjct: 64 GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N+PE+IEVRGEV Sbjct: 124 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEVRGEVL 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEI 249 + K DF ALN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + + Sbjct: 184 MLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGL 242 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ + L + LGF + NG F I +++Y M+ R LPY+IDG V KV Sbjct: 243 IAEEHIQELAYFQALGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 300 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 301 NSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 360 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 361 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 409 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 410 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 465 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 466 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 519 Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549 TLQ+ ++T+ EN G GD+S N+ I + Sbjct: 520 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 579 Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577 L RF+F+LGIRHVG +ARS+A ++ Sbjct: 580 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 639 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615 + A I+ ++A + +P + + AQA+ E Sbjct: 640 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 698 Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654 +Q R+ ALL+ + PS + ++ + K V Sbjct: 699 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 758 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + Sbjct: 759 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 818 Query: 715 LFLL 718 L LL Sbjct: 819 LTLL 822 >gi|268594283|ref|ZP_06128450.1| DNA ligase [Neisseria gonorrhoeae 35/02] gi|268547672|gb|EEZ43090.1| DNA ligase [Neisseria gonorrhoeae 35/02] Length = 827 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 275/844 (32%), Positives = 414/844 (49%), Gaps = 176/844 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P I D+EYD L R +A+ P+L + P+ P ++G Sbjct: 14 ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 67 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F Q+ D + + +EPK Sbjct: 68 GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 127 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N+PE+IEVRGEV Sbjct: 128 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEVRGEVL 187 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K DF LN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F Sbjct: 188 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 246 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ + L + LGF + NG F I +++Y M+ R LPY+IDG+V KV Sbjct: 247 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGMVVKV 304 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 305 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 364 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 365 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 413 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 414 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 469 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 470 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 523 Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549 TLQ+ ++T+ EN G GD+S N+ I + Sbjct: 524 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 583 Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577 L RF+F+LGIRHVG +ARS+A ++ Sbjct: 584 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 643 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615 + A I+ ++A + +P + + AQA+ E Sbjct: 644 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 702 Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654 +Q R+ ALL+ + PS + ++ + K V Sbjct: 703 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 762 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + Sbjct: 763 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 822 Query: 715 LFLL 718 L LL Sbjct: 823 LTLL 826 >gi|325288902|ref|YP_004265083.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271] gi|324964303|gb|ADY55082.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271] Length = 671 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 250/700 (35%), Positives = 368/700 (52%), Gaps = 59/700 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q + L+ L+ +I D YY P I D EYD L R I A P+ P+ P Sbjct: 10 QGPERLNQLKTQIEEADYRYYVLDDPQITDKEYDLLMRELVEIEGAHPEWV---SPDSPS 66 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + KV H P LSL+ + E+L +F R+ + + +E KID Sbjct: 67 QRVGGGPSAQFAKVRHREPLLSLDNAFGREELAEFDRRVRGVVPDAE-----YVVELKID 121 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194 G + + YE+G AA RGDG +GE+++A +R I ++P L S +++RGE Y+ Sbjct: 122 GLTVALTYEEGILTRAATRGDGETGEEITANVRTIKSVPLSLRSRPAAGRLDIRGEGYLP 181 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252 K F+ LN E G+ +ANPRNA +G LR+L+ + IT R L +F + L + +I K Sbjct: 182 KESFVRLNREREEEGQPLFANPRNAGAGSLRQLD-SRITAGRKLGYFAYQLIQAEQIGLK 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E+LQ ++ GF VN+ + + ++ Y EM R LPY+IDGLV KV+ F Q Sbjct: 241 TQAEVLQTLKEWGFQVNDSYKIFSKMEKVMEYCQEMTEERHQLPYEIDGLVIKVNRFDQQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG A+SPRW I++KF +Q T + IDI +GRTG+LTP A ++ V + G+ + AT Sbjct: 301 RELGFTAKSPRWAIAYKFPAEQVETVVKSIDINVGRTGVLTPTAIMQEVFVAGSTVARAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ +DIR+GD VL+ +AG+VIP+++ I +R F+ P Sbjct: 361 LHNLDNIR-----------EKDIRIGDHVLLHKAGDVIPEIIKSIPEKRTGREMIFAMPE 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---- 488 CP C S VVR G+ AA+RC ++C A+Q E L HFVSRDA NIEGLG Sbjct: 410 SCPACDSPVVR----LEGE--AAYRCQ-NISCPARQREALFHFVSRDAMNIEGLGPAIIV 462 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 Q LD I A ++ L+ Q +EN+ G S NL +I + Sbjct: 463 QLLDKGL--------IDDAAGLYDLRHEQ------LENLERMGKKSADNLIKAIEASKTR 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L IF+LGIR+VG + R LA+ Y S + + + L VP +G I+ Sbjct: 509 GLAPLIFALGIRNVGIKAGRVLAQKYGSMEKLQEAGED----------ELCEVPDIGGIM 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A +I F+++ N + L K + + S + +V TGTL+ R + +E Sbjct: 559 AASITSFFRDRANRDFIRRLQK-AGVRMTDSRQASSRLFAGQSIVVTGTLRSWDRREIEE 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 + G SA +S+KT ++ G+NPGSK +KAQ LGV + Sbjct: 618 LIETNGGKASASVSKKTSFVLCGENPGSKADKAQALGVPV 657 >gi|289450450|ref|YP_003474988.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184997|gb|ADC91422.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 758 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 236/702 (33%), Positives = 382/702 (54%), Gaps = 52/702 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E++ L E+++H++ YY PII D YDA+ RR + + A P+ ++ P K+ Sbjct: 94 REITELRAELNFHNNLYYVEDSPIISDYSYDAMLRRLEELETAHPEYMTTDSPT---VKV 150 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K+TH +P SL +++ E+L++ + R+ Q++ +E KIDG Sbjct: 151 GGRASEKFRKLTHIVPMQSLRDVFSREELQEAVERM----QEQLPVGAELVVEEKIDGLS 206 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +++ YE G FV + RGDG GE+++ ++ I ++P L +P +EVR E+Y++K +F Sbjct: 207 VSLEYENGVFVRGSTRGDGLVGEEITENLKQIKSLPLKLQKPLP-YLEVRAEIYLNKENF 265 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQYE 256 ALN +A G KP+ANPRNAA+G LR+L+P ITR L+FF + + I E Sbjct: 266 AALNKAQLAAGLKPFANPRNAAAGSLRQLDPR-ITRDRNLSFFAFNIQRVEGITFTTHDE 324 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + GFPV + F I ++ + R++LPY IDG V K++ +++LG Sbjct: 325 SLFYICNEGFPVVYSSFAHSDFAKIWECVEKIATRRASLPYMIDGAVIKINNLQYREKLG 384 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A++PRW +++K+ ++ T + DI +Q+GRTG +TP+A LEPV + G+ +++ATLHN Sbjct: 385 VTAKTPRWAVAYKYPPEEQETVVKDIKLQVGRTGKITPLAVLEPVMVDGSCVSSATLHNA 444 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYIK +DIRVGD VL+ +AG+VIP + ++++ R A+PF P CP+ Sbjct: 445 DYIK-----------AKDIRVGDTVLIAKAGDVIPAIQKVVLDRRPLKAKPFVMPDKCPV 493 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C +++R + RC G L+C AQ RL H V++DA +I LG L Sbjct: 494 CGEKLIRRKENEVD-----LRC-GNLSCPAQVFRRLLHMVAKDALDIADLGPAVLARL-- 545 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A I +DIF L + ++ N+ GF SV NL + I K + L+RFI + Sbjct: 546 --QEAGLINELSDIFRLAAYR----PEMLNLPGFQQKSVDNLLNEIEKAKVKPLDRFIVA 599 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +VG A+ LA + + A D +L+ V +G AQ+I++F+ Sbjct: 600 LGIDYVGVVAAKKLAVAFRK--------GGLSALAAADIETLLSVETIGQTAAQSIIDFF 651 Query: 617 QNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + P + ++A +K SP + E+N + K TGTL+ +R + ++ + Sbjct: 652 KRPTTVALLQAWQELGVKPASPPL--IEEN--GVWQGKIFAVTGTLENYKRSEVKQLIEA 707 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 G V+ +S K +I G+ G KL KA++LG+ + +E F Sbjct: 708 RGGTVANTVSSKIFAVIAGEKAGGKLAKAKELGIPVWSETDF 749 >gi|218767787|ref|YP_002342299.1| putative DNA ligase [Neisseria meningitidis Z2491] gi|166216217|sp|A1IQR7|DNLJ_NEIMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|121051795|emb|CAM08101.1| putative DNA ligase [Neisseria meningitidis Z2491] gi|319410038|emb|CBY90372.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria meningitidis WUE 2594] Length = 841 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 269/822 (32%), Positives = 406/822 (49%), Gaps = 163/822 (19%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALERNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV + K DF ALN Sbjct: 161 VQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEVRGEVLMLKADFAALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y +M+ R LPY+IDG+V KV+ + Q++LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLTFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D + Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA--FSIRIPADIFTLQRRQQTS--TTKIE 525 + L HF SR A +I+GLG++Q++ ++D F+ DI TLQ+ ++T+ T Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLV-AQDLVLHFADLYRLDIPTLQKMKETADKTVAES 559 Query: 526 NILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV--------- 562 + + SV N+ I + L RF+F+LGIRHV Sbjct: 560 DQMPSEGSSVGASGKHKKQPVKWAENILAGIESGKTPELARFLFALGIRHVGERTAKTLA 619 Query: 563 -----------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 G +ARS+A ++ + A I+ ++A + Sbjct: 620 QAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQTQAV 678 Query: 600 RVP-----------------LVGDIIAQAI-------VEFYQN--------------PRN 621 +P + + AQA+ +E QN P+N Sbjct: 679 TIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSEPQN 738 Query: 622 ICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +E L + PS + ++ + K V TGTL ++R +AQ + G Sbjct: 739 AALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGK 798 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS +S+KTD ++ G+ GSKLEKA LGV I++E + L LL Sbjct: 799 VSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLTLL 840 >gi|67920947|ref|ZP_00514466.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501] gi|67857064|gb|EAM52304.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501] Length = 670 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 234/695 (33%), Positives = 381/695 (54%), Gaps = 51/695 (7%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY PI+ D+ YD L R D + L S+ P ++G + + H+I Sbjct: 19 AYYVLDNPIMEDAVYDQLYRELDTLEKENTHLITSDSPT---QRVGDKPASQFVSLAHNI 75 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P SLE +N+E+L+ + R R+ +K++ S + E KIDG+ + + YE G + Sbjct: 76 PLYSLENAFNLENLQAWQKRWQRYSEKENIESAEYVCELKIDGSALALTYENGLLIRGVT 135 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG +GED++ +R I +IP L+L N P IIEVRGE ++ ++F +N + G Sbjct: 136 RGDGTTGEDITQNVRTIRSIPLKLNLENPPPIIEVRGEAFLPLDEFDRINQQREENGEAL 195 Query: 213 YANPRNAASGILRRLNPTDI-TRYLNFFVHGLG-KTSEIFAKGQYEMLQKMRCLGFPVNN 270 +ANPRNAA+G LR+L+P + R L FF + L +T++I Q+E L ++ GF VN Sbjct: 196 FANPRNAAAGTLRQLDPKIVDQRRLQFFAYTLHLETTDI--NSQWESLNYLQNSGFLVNT 253 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 + + + Y+ + ++ R LPY DG+V K++++SLQK LG + PRW I+ K+ Sbjct: 254 HRKLCPSLEEVADYFQQWETERKDLPYMTDGVVVKINDYSLQKVLGFTQKFPRWAIALKY 313 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 ++A T + DI + +GRTG +TP+A +EPV++ G + ATLHN D IK L Sbjct: 314 PAEEAPTIVKDIIVNVGRTGAVTPMAVMEPVHLAGTTVQKATLHNSDRIKQL-------- 365 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 DIRVGD V++++AGE+IP+VV ++ + R P+ Q + PS CP C S + R N Sbjct: 366 ---DIRVGDTVIIRKAGEIIPEVVRVLDDLRPPNTQLYQMPSHCPECDSTLKRPPNE--- 419 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 A RC L+C A L H+ SRDA +I GLG++ + + + AD+ Sbjct: 420 ---AVTRCM-NLSCGAILRGSLVHWASRDALDIRGLGEKIVILLINNG----LVNSLADL 471 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + L + KI N+ G S NL ++I + R ++ LGIR+VG+ A L Sbjct: 472 YDL------TPEKIANLERMGSKSANNLIEAIEGSKKQPFSRVLYGLGIRYVGSVTAGLL 525 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 A+ + S + +Q + L V VG+ IAQ+I++++ +N ++ L K Sbjct: 526 AENFPSMEQLSQA----------SFSDLSSVYGVGEEIAQSIIDWFSIEKNCDLIQQLEK 575 Query: 631 -----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 E + S + + K V TGTL ++R++A+ + + G V++ +S++T Sbjct: 576 VGLQLEATKSKTPTVDSPLTPFAGKTFVITGTLPSLKRNEAKALIMEAGGKVTSSVSKRT 635 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 D +++G+NPGSKL +A++LG+ ++E +FL L+++ Sbjct: 636 DYLLLGENPGSKLTQAEKLGITQLSEAEFLTLVKK 670 >gi|270296700|ref|ZP_06202899.1| DNA ligase, NAD-dependent [Bacteroides sp. D20] gi|270272687|gb|EFA18550.1| DNA ligase, NAD-dependent [Bacteroides sp. D20] Length = 665 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/708 (34%), Positives = 375/708 (52%), Gaps = 54/708 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E+ H+ YY + P I D E+D L R + P+ +D N P + Sbjct: 4 KEKIDQLRAELHQHNYNYYVLNAPEISDKEFDDLMRELQDLEKEHPEY---QDDNSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136 +G ++N + +V H P LSL ++ ++ F R+ KK N F E K DG Sbjct: 61 VGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYERV-----KKALNEDFEICCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE GK V A RGDG G+DV+ ++ I TIP VL + P+ E+RGE+ + Sbjct: 116 TSISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPKSFEIRGEILMPWV 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N T + +R L+ +++ L E+ G Y Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSTIVASRKLDAYLYYL-LGEELPCDGHY 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ GF + R+A++ + Y N + R LP DG+V K++ QK L Sbjct: 235 ENLQAAASWGFKTSEHTRKAHSLEEVFEYINYWDTERKNLPVATDGIVLKINSLRQQKNL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + C Sbjct: 355 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S+++R AAH C AC Q +++HF+SR A NI+GLG + +D F Sbjct: 404 PECGSKLIRFEGE------AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ I+ AD++ L+ T I+N+ G+ S N+ + I + + ER + Sbjct: 458 YR----LGLIKDTADLYQLK------TDDIKNLERMGEKSAENIVNGIAASKEVPFERVL 507 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG +A+ +AK + + N D L + +G+ IAQ+I+ Sbjct: 508 FALGIRFVGETVAKKIAKSFTDIEEL----------ENADLEKLKNIDEIGEKIAQSIIT 557 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671 ++ NP N VE LK + R E+++S ++ + +V +G R + +E + Sbjct: 558 YFSNPVNRELVER-LKSNGLQLHRTEEDLSGYTDKLAGQSIVISGVFTHHSRDEYKEMIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ G+N G +KLEKAQ+LGVKIM+E++FL L+ Sbjct: 617 KNGGKNVGSISSKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLALI 664 >gi|327480472|gb|AEA83782.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri DSM 4166] Length = 791 Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust. Identities = 220/633 (34%), Positives = 342/633 (54%), Gaps = 49/633 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S + A + ++ L EI H+ YY +P + D+EYD L A+ P+L P Sbjct: 3 SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELV---TPE 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSI 126 P ++GG + +V H +P LSL + +DL F R+ D ++ Sbjct: 60 SPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGDGAAV 119 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 ++ EPK+DG +++ YE G V A RGDG +GED+SA +R + IP ++ P ++ Sbjct: 120 EYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVL 179 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGE+Y+ K F ALN + G KP+ANPRNAA+G LR+L+ +R L +G+G Sbjct: 180 EVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVG 239 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 ++ +L+ ++ G P++ ++ A +YY+ + + R LPY+IDG+V+ Sbjct: 240 RSDGELPNTHIGILEALKGWGLPISRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVF 299 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ Q++LG RAR PRW I+HKF ++ T LLD++ Q+GRTG +TPVARL+PV + Sbjct: 300 KVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVA 359 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D + L + +GD V+V+RAG+VIP+++ +I R D Sbjct: 360 GVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQILGVIAERRPTD 408 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAA------HRCTGGLACSAQQLERLKHFVSR 478 A+ P CP+C S V R K K + +RC G LAC AQ + + HFVSR Sbjct: 409 ARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSR 468 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG + ++ D +R PAD++ L Q + + GF ++S NL Sbjct: 469 RAMDIDGLGDKIVEQLV---DKGL-VRSPADLYCLTHEQ------VIELEGFAEISTRNL 518 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I+ R SL RF+++LGI VG E A+ LA+ S + + ++ L Sbjct: 519 LHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGRALPDV----------L 568 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + +P VG +A I F+++ N + ALL+E Sbjct: 569 VYLPDVGLEVAHEIHSFFEDEHNRTVI-ALLRE 600 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 12/151 (7%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNPRNICAVEALLKEVSP 634 Q A+ ++ A DWL L +V + + A+++ +++ +N A+EA L+E Sbjct: 639 QRLAERFGSLEAIIAADWLDLRQVERLTEKAARSLRDYFDKSENAERARAIEAQLRE--- 695 Query: 635 SIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 G H ++ E L V TGTL+ + R + + + LGA V+ +S KT ++ Sbjct: 696 -FGMHWESERKAAEGLPLAGQTWVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVV 754 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G GSKL KA + GV +++E QFL L Q Sbjct: 755 AGPGAGSKLTKANEFGVVVLDEAQFLERLAQ 785 >gi|268600753|ref|ZP_06134920.1| DNA ligase [Neisseria gonorrhoeae PID18] gi|268683767|ref|ZP_06150629.1| DNA ligase [Neisseria gonorrhoeae SK-92-679] gi|268686007|ref|ZP_06152869.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035] gi|293399617|ref|ZP_06643770.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62] gi|268584884|gb|EEZ49560.1| DNA ligase [Neisseria gonorrhoeae PID18] gi|268624051|gb|EEZ56451.1| DNA ligase [Neisseria gonorrhoeae SK-92-679] gi|268626291|gb|EEZ58691.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035] gi|291610186|gb|EFF39308.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62] Length = 829 Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust. Identities = 275/844 (32%), Positives = 413/844 (48%), Gaps = 176/844 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P I D+EYD L R +A+ P+L + P+ P ++G Sbjct: 16 ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 69 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F Q+ D + + +EPK Sbjct: 70 GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 129 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N+PE+IEVRGEV Sbjct: 130 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEVRGEVL 189 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEI 249 + K DF ALN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + + Sbjct: 190 MLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGL 248 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ + L + LGF + NG F I +++Y M+ R LPY+IDG V KV Sbjct: 249 IAEEHIQELAYFQALGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 306 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 307 NSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 366 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 367 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 415 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 416 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 471 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 472 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 525 Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549 TLQ+ ++T+ EN G GD+S N+ I + Sbjct: 526 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 585 Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577 L RF+F+LGIRHVG +ARS+A ++ Sbjct: 586 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 645 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615 + A I+ ++A + +P + + AQA+ E Sbjct: 646 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 704 Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654 +Q R+ ALL+ + PS + ++ + K V Sbjct: 705 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 764 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + Sbjct: 765 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 824 Query: 715 LFLL 718 L LL Sbjct: 825 LTLL 828 >gi|325133819|gb|EGC56475.1| DNA ligase, NAD-dependent [Neisseria meningitidis M13399] Length = 841 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 267/825 (32%), Positives = 404/825 (48%), Gaps = 169/825 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+ P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALELNHPEFKL---PDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV + K DF+ALN Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIEVRGEVLMQKADFVALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQDGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y M+ R LPY+IDG+V KV+ + Q +LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D + Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++ + T Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKEAADKTV 556 Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562 + + D SV N+ I + L RF+F+LGIRHV Sbjct: 557 AESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616 Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 G +ARS+A ++ + A I+ ++A Sbjct: 617 TLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675 Query: 597 SLIRVPL-----------------VGDIIAQAIVEF-----------------YQNPRNI 622 + +P + + AQA+ E +Q R+ Sbjct: 676 QAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKSIEGLQTDKALPTDWQAWRSE 735 Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ALL+ + PS + ++ + K V TGTL ++R +AQ + Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQALIEAA 795 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S+KTD ++ G+ GSKLEKA LGV I++E + L LL Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLTLL 840 >gi|194097948|ref|YP_002000994.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945] gi|239998421|ref|ZP_04718345.1| putative DNA ligase [Neisseria gonorrhoeae 35/02] gi|254781380|sp|B4RJQ9|DNLJ_NEIG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193933238|gb|ACF29062.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945] gi|317163707|gb|ADV07248.1| putative DNA ligase [Neisseria gonorrhoeae TCDC-NG08107] Length = 823 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 275/844 (32%), Positives = 414/844 (49%), Gaps = 176/844 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P I D+EYD L R +A+ P+L + P+ P ++G Sbjct: 10 ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F Q+ D + + +EPK Sbjct: 64 GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N+PE+IEVRGEV Sbjct: 124 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVSNIPLRLHGENVPELIEVRGEVL 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K DF LN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F Sbjct: 184 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 242 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ + L + LGF + NG F I +++Y M+ R LPY+IDG+V KV Sbjct: 243 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGMVVKV 300 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 301 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 360 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 361 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 409 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 410 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 465 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 466 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 519 Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549 TLQ+ ++T+ EN G GD+S N+ I + Sbjct: 520 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 579 Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577 L RF+F+LGIRHVG +ARS+A ++ Sbjct: 580 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 639 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615 + A I+ ++A + +P + + AQA+ E Sbjct: 640 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 698 Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654 +Q R+ ALL+ + PS + ++ + K V Sbjct: 699 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 758 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + Sbjct: 759 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 818 Query: 715 LFLL 718 L LL Sbjct: 819 LTLL 822 >gi|325110927|ref|YP_004271995.1| DNA ligase [Planctomyces brasiliensis DSM 5305] gi|324971195|gb|ADY61973.1| DNA ligase [Planctomyces brasiliensis DSM 5305] Length = 675 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/713 (32%), Positives = 372/713 (52%), Gaps = 57/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E++SL EI H+ YY ++P I D E+D L R + P+ + P+ P K+ Sbjct: 7 QEIASLRDEIERHNRLYYVEAQPEITDREFDRLLNRLIDLEQQHPEF---QSPDSPTQKV 63 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG+ V H++P LS+E ++ E + +F RI + D ++ +T+E KIDG Sbjct: 64 GGQPIEGFQTVPHAVPMLSIENVFEPEGIDEFDRRICKLL---DRETLDYTIEYKIDGVA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 + + YE G+ + A RGDG G+D+++ R +P ++ N PE++EVRGE YI+ +D Sbjct: 121 LALVYEHGRLIRAVTRGDGQQGDDITSNARTARGVPLKLAGDNPPELLEVRGEAYIANSD 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F L E A G +ANPRN+ +G L+ L+P R + F HG+G S ++ Sbjct: 181 FAVLRAEQEARGETVFANPRNSTAGALKLLDPKLSAQRKVRFVSHGIGAHSNFGVDTHFD 240 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++K+R G P G+R + + M TL ++DGLV KV+ +L+++LG Sbjct: 241 YIEKLREFGLPTTPGIRVCHGIQEVREQIEMMMDDLHTLDLEVDGLVIKVNSLALREELG 300 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW+I++K+ +A+TR+ DI IQ+G+TG LTPVA L PV I G +T ++LHN Sbjct: 301 NTSKSPRWVIAYKWERYEATTRVEDIQIQVGKTGTLTPVAYLAPVEIAGTTVTRSSLHNR 360 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D ++ L DIR+GD +V++AG++IP V+ + R Q F FP+ CP Sbjct: 361 DELQRL-----------DIRIGDYAVVEKAGKIIPHVLRVERERRDGSEQEFHFPTQCPE 409 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQ+ VV+D + G + RC C A+ E L+ F SR A +I+GLG + ++ Sbjct: 410 CQTEVVQD---EGGVYI---RCPNP-DCPARLRESLRFFASRQAMDIDGLGIKLIEQLVD 462 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A + ADI+ L R+ ++ + G+ SV + I + + L R + Sbjct: 463 ----AGLLTSLADIYRLPERRD----EMLALDRMGEKSVDKVLKGIERSKEQPLWRLLTG 514 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 L IRHVG AR LA+ + S ++ +A N+ +G +IA+++ EF Sbjct: 515 LNIRHVGTSNARILAERFGSLGQLQEQSAENLAAVNE----------IGPVIAESVYEFL 564 Query: 617 QNPRNICAVEAL---------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + V L K+VSP E+ K V TGTL+ R +A+ Sbjct: 565 HSDFGATLVNQLADLGLNLGTAKQVSP----EEEGAELPWAGKTFVLTGTLETFTRQQAE 620 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 E + G S +S+KT ++ G GSKLEKA++LG+ I+ E F +L++ Sbjct: 621 EEIRVRGGKASGSVSKKTSFVVAGAEAGSKLEKAEKLGISILTEADFTQMLEE 673 >gi|146282220|ref|YP_001172373.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri A1501] gi|145570425|gb|ABP79531.1| DNA ligase, NAD-dependent [Pseudomonas stutzeri A1501] Length = 802 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 221/633 (34%), Positives = 341/633 (53%), Gaps = 49/633 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S + A + ++ L EI H+ YY +P + D+EYD L A+ P+L P Sbjct: 17 SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELV---TPE 73 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSI 126 P ++GG + +V H +P LSL + +DL F R+ D + Sbjct: 74 SPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGDGAVV 133 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 ++ EPK+DG +++ YE G V A RGDG +GED+SA +R + IP ++ P ++ Sbjct: 134 EYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVL 193 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGE+Y+ K F ALN + G KP+ANPRNAA+G LR+L+ +R L +G+G Sbjct: 194 EVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVG 253 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 ++ +LQ ++ G P++ ++ A +YY+ + + R LPY+IDG+V+ Sbjct: 254 RSDGELPDTHIGILQALKGWGLPISRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVF 313 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ Q++LG RAR PRW I+HKF ++ T LLD++ Q+GRTG +TPVARL+PV + Sbjct: 314 KVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVA 373 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D + L + +GD V+V+RAG+VIP+++ +I R D Sbjct: 374 GVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQILGVIAERRPTD 422 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAA------HRCTGGLACSAQQLERLKHFVSR 478 A+ P CP+C S V R K K + +RC G LAC AQ + + HFVSR Sbjct: 423 ARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSR 482 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG + ++ D +R PAD++ L Q + + GF ++S NL Sbjct: 483 RAMDIDGLGDKIVEQLV---DKGL-VRSPADLYCLTHEQ------VIELEGFAEISTRNL 532 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I+ R SL RF+++LGI VG E A+ LA+ S + + ++ L Sbjct: 533 LHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGRALPDV----------L 582 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + +P VG +A I F+++ N + ALL+E Sbjct: 583 VYLPDVGLEVAHEIHSFFEDEHNRTVI-ALLRE 614 Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 12/154 (7%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI---CAVEALLKEVSP 634 Q A+ ++ A DWL L +V + + A+++ +++ P N +EA L+E Sbjct: 653 QRLAERFGSLEAIIAADWLDLRQVERLTEKAARSLRDYFDKPENAERARLIEAQLRE--- 709 Query: 635 SIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 G H ++ E L V TGTL+ + R + + + LGA V+ +S KT ++ Sbjct: 710 -FGMHWESERKAAEGLPLAGQTWVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVV 768 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 G GSKL KA +LGV +++E QF+ L Q + Sbjct: 769 AGPGAGSKLTKANELGVTVLDESQFIERLAQLGS 802 >gi|261392961|emb|CAX50546.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria meningitidis 8013] Length = 841 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 268/825 (32%), Positives = 405/825 (49%), Gaps = 169/825 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+ + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDRLFRELEALELNHPEF---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV + K DF ALN Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y +M+ R LPY+IDG+V KV+ + Q++LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D + Sbjct: 338 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++ + T Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKEAADKTV 556 Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562 + + D SV N+ I + L RF+F+LGIRHV Sbjct: 557 AESDQMPSEDSSVGASGKHKKPPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616 Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 G +ARS+A ++ + A I+ ++A Sbjct: 617 TLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675 Query: 597 SLIRVPL-----------------VGDIIAQAI-------VEFYQN-------------- 618 + +P + + AQA+ +E QN Sbjct: 676 QAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSE 735 Query: 619 PRNICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 P+N +E L + PS + ++ + K V TGTL ++R +AQ + Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINEAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840 >gi|255102476|ref|ZP_05331453.1| DNA ligase [Clostridium difficile QCD-63q42] Length = 674 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 232/706 (32%), Positives = 387/706 (54%), Gaps = 52/706 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + E++ L + I+YH++ YY P I D EYD L + ++ P+L R + P N+ Sbjct: 4 KDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKR---IDSPTNR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG+ ++ H P LSL ++ +DLR F R+ + + ++ + +E KIDG Sbjct: 61 VGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + Y G+F A RGDG GED+S + + +IP L +N + + VRGEVYISK++ Sbjct: 117 SVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKDN 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + +ANPRN A+G LR+L+P R L+ FV + E + E Sbjct: 175 FRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHSE 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ + LGF V+ + + ++ + R L Y+IDG+V KV+ + ++G Sbjct: 235 SLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++ T+++DI +++GRTG +TP A LEPV + G ++ ATLHNE Sbjct: 295 YTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DI++ D VLV++AG++IP+V+++I ER D F P CP+ Sbjct: 355 DYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCPV 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C +R G+ AA +C ++C AQ + HFVSRDA NI+GLG+ + Sbjct: 404 CSEPTIR----LEGE--AAVKCI-NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLLN 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +I D+ L ++ +E + G+ S NL +SI K + L R I Sbjct: 457 E-------KIIQDVSDLYYIKKEDVVDLERM---GEKSADNLINSIEKSKENDLWRLING 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI+ +G + A+ LA NF ++++ +I+ ++ L + G I+A ++VEF+ Sbjct: 507 LGIKFIGVKAAKILA------YNF-KDLDEVISATSE---QLEELEEFGSIMANSVVEFF 556 Query: 617 QNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + +N+ + LK V + S+ + V E K+V TGTL ++R+ A++ + + Sbjct: 557 KEDKNMNVINK-LKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEKR 615 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL LL+ Sbjct: 616 GGKATSSVSKSTTFVLAGEEAGSKLTKASDLGIKVIDEERFLELLK 661 >gi|166216289|sp|A4VKN0|DNLJ_PSEU5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 788 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 221/633 (34%), Positives = 341/633 (53%), Gaps = 49/633 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S + A + ++ L EI H+ YY +P + D+EYD L A+ P+L P Sbjct: 3 SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELV---TPE 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSI 126 P ++GG + +V H +P LSL + +DL F R+ D + Sbjct: 60 SPTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGDGAVV 119 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 ++ EPK+DG +++ YE G V A RGDG +GED+SA +R + IP ++ P ++ Sbjct: 120 EYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVL 179 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGE+Y+ K F ALN + G KP+ANPRNAA+G LR+L+ +R L +G+G Sbjct: 180 EVRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVG 239 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 ++ +LQ ++ G P++ ++ A +YY+ + + R LPY+IDG+V+ Sbjct: 240 RSDGELPDTHIGILQALKGWGLPISRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVF 299 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ Q++LG RAR PRW I+HKF ++ T LLD++ Q+GRTG +TPVARL+PV + Sbjct: 300 KVNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVA 359 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D + L + +GD V+V+RAG+VIP+++ +I R D Sbjct: 360 GVTVSNATLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQILGVIAERRPTD 408 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAA------HRCTGGLACSAQQLERLKHFVSR 478 A+ P CP+C S V R K K + +RC G LAC AQ + + HFVSR Sbjct: 409 ARAVHVPEQCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSR 468 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG + ++ D +R PAD++ L Q + + GF ++S NL Sbjct: 469 RAMDIDGLGDKIVEQLV---DKGL-VRSPADLYCLTHEQ------VIELEGFAEISTRNL 518 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I+ R SL RF+++LGI VG E A+ LA+ S + + ++ L Sbjct: 519 LHAIDASRKPSLARFVYALGIPDVGEETAKLLARALGSLDRIGRALPDV----------L 568 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + +P VG +A I F+++ N + ALL+E Sbjct: 569 VYLPDVGLEVAHEIHSFFEDEHNRTVI-ALLRE 600 Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 12/154 (7%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC---AVEALLKEVSP 634 Q A+ ++ A DWL L +V + + A+++ +++ P N +EA L+E Sbjct: 639 QRLAERFGSLEAIIAADWLDLRQVERLTEKAARSLRDYFDKPENAERARLIEAQLRE--- 695 Query: 635 SIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 G H ++ E L V TGTL+ + R + + + LGA V+ +S KT ++ Sbjct: 696 -FGMHWESERKAAEGLPLAGQTWVLTGTLETMSRDEGKARLEALGAKVAGSVSAKTTCVV 754 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 G GSKL KA +LGV +++E QF+ L Q + Sbjct: 755 AGPGAGSKLTKANELGVTVLDESQFIERLAQLGS 788 >gi|297623824|ref|YP_003705258.1| DNA ligase, NAD-dependent [Truepera radiovictrix DSM 17093] gi|297165004|gb|ADI14715.1| DNA ligase, NAD-dependent [Truepera radiovictrix DSM 17093] Length = 681 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 236/683 (34%), Positives = 355/683 (51%), Gaps = 59/683 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+E+D L + P+L P+ P ++G S V H P Sbjct: 25 YYVLQDPELSDAEWDRLFHELKRLEETHPEL---RTPDSPTQRVGAPPQASFAAVRHPHP 81 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ +++ L +F R+ R D I + E KIDG I + YE G V+AA R Sbjct: 82 MLSLDNAFDLAGLEEFEARLKRVLAT--DEEIAYLAELKIDGLSINLLYEGGVLVWAATR 139 Query: 155 GDGHSGEDVSACIRAIPTIPRVL------SLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 GDG +GEDV+ + +P +P+ L +PE++EVRGE+Y+S+ +F +N+E A Sbjct: 140 GDGVTGEDVTFNVLGVPGLPQRLPEALPGGGRVPEVLEVRGELYLSRAEFRRINEERAAA 199 Query: 209 GRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267 G P+ NPRNAASG +R+L+P R L F +G+ + + + Q E+L + GF Sbjct: 200 GEPPFKNPRNAASGTIRQLDPRVSAGRKLQVFFYGVAEPRALGVRTQSELLDWLAAAGFR 259 Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 N +A + ++RSTL Y+ DG+V KVDE +L +LG AR+PRW ++ Sbjct: 260 TNPLRARARGIAALEPLIARWTALRSTLDYEADGVVVKVDELALHDELGSTARAPRWAVA 319 Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387 +KF ++ T LL + + +GRTG +TPVA LEP I G ++ ATLHN +I L Sbjct: 320 YKFPAEEVETTLLGVSLGVGRTGKITPVAELEPRLIEGTEVSRATLHNPGFIAAL----- 374 Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447 D+RVGDRV+V ++G +IP+V+ ++ R + P+ FP CP C ++ D Sbjct: 375 ------DLRVGDRVMVHKSGGIIPEVIRVLTEARTAELPPYVFPETCPACGEALIED--- 425 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 A RC LAC AQ L RL H+ SR A +I GL + L D IP Sbjct: 426 -----GANVRCV-NLACPAQVLARLSHYASRGAMDIAGLSTKTLQKLL---DKGLIRTIP 476 Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 D++ L Q T + GFG+ S NL +I + + LER + +LG+ HVGA A Sbjct: 477 -DLYDLTPEQLTP------LEGFGERSAQNLVAAIARSKTQPLERLLVALGLPHVGARTA 529 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + LA+ + S + A D L +P VG+ A+A+ + Q P A+ A Sbjct: 530 QLLARAFGSLE----------ALQAADTADLAALPEVGETTARAVHDALQQP----ALRA 575 Query: 628 LLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L+ E+ S ++ V TGTL + R + +E + LGA V++ +S+KT Sbjct: 576 LIGELRARGVGGGAAAPRSDRLKGLTFVLTGTLSE-PRDRLKERLEALGARVASSVSKKT 634 Query: 686 DIIIVGDNPGSKLEKAQQLGVKI 708 ++ G++PGSKL+KA+ LGV + Sbjct: 635 SFVVAGEDPGSKLDKARALGVPV 657 >gi|325197886|gb|ADY93342.1| DNA ligase, NAD-dependent [Neisseria meningitidis G2136] Length = 841 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 270/825 (32%), Positives = 407/825 (49%), Gaps = 169/825 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV + K DF ALN Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARRQGGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y M+ R LPY+IDG+V KV+ + Q++LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D Sbjct: 338 PRWAIAHKFPAEEALTVVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 393 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 394 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAEAPAANQTQSVPLYKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++T+ T Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556 Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562 + + SV N+ I + L RF+F+LGIRHV Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616 Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 G +ARS+A ++ + A I+ ++A Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQA 675 Query: 597 SLIRVPL-----------------VGDIIAQAIVEF-----------------YQNPRNI 622 + +P + + AQA+ E +Q R+ Sbjct: 676 QAVSLPAAQYAEPQRWIARLPGFKISENKAQALWELAGKSIEGLQTDKSLPADWQAWRSE 735 Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ALL+ + PS + ++ + K V TGTL ++R +AQ + Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840 >gi|254976908|ref|ZP_05273380.1| DNA ligase [Clostridium difficile QCD-66c26] gi|255308381|ref|ZP_05352552.1| DNA ligase [Clostridium difficile ATCC 43255] gi|255316048|ref|ZP_05357631.1| DNA ligase [Clostridium difficile QCD-76w55] gi|255518705|ref|ZP_05386381.1| DNA ligase [Clostridium difficile QCD-97b34] gi|255651827|ref|ZP_05398729.1| DNA ligase [Clostridium difficile QCD-37x79] gi|306521614|ref|ZP_07407961.1| DNA ligase [Clostridium difficile QCD-32g58] Length = 674 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 232/707 (32%), Positives = 387/707 (54%), Gaps = 52/707 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 + E++ L + I+YH++ YY P I D EYD L + ++ P+L R + P N Sbjct: 3 VKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKR---IDSPTN 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG+ ++ H P LSL ++ +DLR F R+ + + ++ + +E KIDG Sbjct: 60 RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKIDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + Y G+F A RGDG GED+S + + +IP L +N + + VRGEVYISK+ Sbjct: 116 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 173 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 +F +N++ + +ANPRN A+G LR+L+P R L+ FV + E + Sbjct: 174 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHS 233 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+ + LGF V+ + + ++ + R L Y+IDG+V KV+ + ++ Sbjct: 234 ESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEM 293 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++ T+++DI +++GRTG +TP A LEPV + G ++ ATLHN Sbjct: 294 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 353 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 EDYI+ +DI++ D VLV++AG++IP+V+++I ER D F P CP Sbjct: 354 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 402 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C +R G+ AA +C ++C AQ + HFVSRDA NI+GLG+ + Sbjct: 403 VCSEPTIR----LEGE--AAVKCI-NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 455 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 +I D+ L ++ +E + G+ S NL +SI K + L R I Sbjct: 456 NE-------KIIQDVSDLYYIKKEDVVDLERM---GEKSADNLINSIEKSKENDLWRLIN 505 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGI+ +G + A+ LA NF ++++ +I+ ++ L + G I+A ++VEF Sbjct: 506 GLGIKFIGVKAAKILA------YNF-KDLDEVISATSE---QLEELEEFGSIMANSVVEF 555 Query: 616 YQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ +N+ + LK V + S+ + V E K+V TGTL ++R+ A++ + + Sbjct: 556 FKEDKNMNVINK-LKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEK 614 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL LL+ Sbjct: 615 RGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 661 >gi|260684853|ref|YP_003216138.1| DNA ligase [Clostridium difficile CD196] gi|260688511|ref|YP_003219645.1| DNA ligase [Clostridium difficile R20291] gi|260211016|emb|CBA66332.1| DNA ligase [Clostridium difficile CD196] gi|260214528|emb|CBE07046.1| DNA ligase [Clostridium difficile R20291] Length = 677 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 232/707 (32%), Positives = 387/707 (54%), Gaps = 52/707 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 + E++ L + I+YH++ YY P I D EYD L + ++ P+L R + P N Sbjct: 6 VKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKR---IDSPTN 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG+ ++ H P LSL ++ +DLR F R+ + + ++ + +E KIDG Sbjct: 63 RVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + Y G+F A RGDG GED+S + + +IP L +N + + VRGEVYISK+ Sbjct: 119 LSVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 +F +N++ + +ANPRN A+G LR+L+P R L+ FV + E + Sbjct: 177 NFRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHS 236 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+ + LGF V+ + + ++ + R L Y+IDG+V KV+ + ++ Sbjct: 237 ESLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEM 296 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++ T+++DI +++GRTG +TP A LEPV + G ++ ATLHN Sbjct: 297 GYTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHN 356 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 EDYI+ +DI++ D VLV++AG++IP+V+++I ER D F P CP Sbjct: 357 EDYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCP 405 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C +R G+ AA +C ++C AQ + HFVSRDA NI+GLG+ + Sbjct: 406 VCSEPTIR----LEGE--AAVKCI-NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLL 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 +I D+ L ++ +E + G+ S NL +SI K + L R I Sbjct: 459 NE-------KIIQDVSDLYYIKKEDVVDLERM---GEKSADNLINSIEKSKENDLWRLIN 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGI+ +G + A+ LA NF ++++ +I+ ++ L + G I+A ++VEF Sbjct: 509 GLGIKFIGVKAAKILA------YNF-KDLDEVISATSE---QLEELEEFGSIMANSVVEF 558 Query: 616 YQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ +N+ + LK V + S+ + V E K+V TGTL ++R+ A++ + + Sbjct: 559 FKEDKNMNVINK-LKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEK 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL LL+ Sbjct: 618 RGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELLK 664 >gi|260911472|ref|ZP_05918061.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295] gi|260634401|gb|EEX52502.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295] Length = 666 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 237/715 (33%), Positives = 383/715 (53%), Gaps = 66/715 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L ++ +H+ YY + P + D E+D L R + P++ DPN P ++ Sbjct: 5 KRIEELRNQLHHHNYLYYVQNSPTLSDQEFDHLMRELQDLEAKHPEVY---DPNSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGT 137 G +++ +V H P LSL +N +++ + Y +K D F E K DG Sbjct: 62 GSDLSTGFTQVRHRYPMLSLANTYNEQEVASW----YENVRKDLDGQPFEVCCELKYDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE+G+ V A RGDG G+DV+A +R I IP VL P+ E+RGE+ + Sbjct: 118 SISLTYEQGRLVRAVTRGDGEQGDDVTANVRTIRAIPLVLPGTGYPDEFEIRGEILMPWK 177 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F LN E +ANPRNAASG L+ L+P + R L+ +++ L + + G Y Sbjct: 178 VFEQLNAEREKAEEPLFANPRNAASGTLKSLDPKLVAKRKLDAYLYYL-LGDNVPSDGHY 236 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+ GF V+ G+R+AN+ I + N + R LP DG+V KV+ Q+QL Sbjct: 237 ENLKTAEAWGFKVSEGIRKANSLEQIYEFINHWDTARHNLPVATDGIVLKVNSLRQQQQL 296 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++ TRL ++ Q+GRTG +TPVA +EPV + G + ATL+N Sbjct: 297 GFTAKSPRWAIAYKFKAERVCTRLNEVTFQVGRTGAVTPVANMEPVLLAGTTVKRATLNN 356 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED+I+ L D+ +GD V V++ GE+IPK+V + V+ R PD QP F S CP Sbjct: 357 EDFIRSL-----------DLHIGDNVFVEKGGEIIPKIVGVDVSHRSPDLQPVHFISNCP 405 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S +VR G+ AA+ C C Q R++HF++R A NI+ +G + +D +F Sbjct: 406 ECGSPLVR----YAGE--AAYYCPNDTGCPPQIKGRIEHFIARKAMNIDSIGPETIDDYF 459 Query: 496 KSEDPAFSIRIPADIFTLQRRQ-------QTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +R AD++ ++ Q Q S KI V + DS+ + Sbjct: 460 RKG----IVRNVADLYEIRTEQINGDGTRQKSAQKI----------VKGIQDSV----ST 501 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 ER +F+LGIR VG A+ LAK++ S I+ ++ + L+ V VG +I Sbjct: 502 PFERVLFALGIRFVGETTAKLLAKHFKS-------IDALMTATPE---QLVEVEGVGTVI 551 Query: 609 AQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKA 666 A+++V F+ + N+ +E L + + ++ ++ ++S+ + K +V +G ++ R + Sbjct: 552 AESVVRFFHDEVNLNIIERLRQHGLQMALSADQQQIASDKLAGKNIVISGVFERHSRDEY 611 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + G + +S KT I+ G N G SK++KAQQLG+++++E+ FL +L+Q Sbjct: 612 KAMIESNGGKNVSSISNKTSFILAGANMGPSKMQKAQQLGIEMIDEDTFLNMLEQ 666 >gi|162448184|ref|YP_001621316.1| DNA ligase [Acholeplasma laidlawii PG-8A] gi|190359222|sp|A9NHW0|DNLJ_ACHLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161986291|gb|ABX81940.1| DNA ligase, NAD-dependent [Acholeplasma laidlawii PG-8A] Length = 659 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 243/695 (34%), Positives = 377/695 (54%), Gaps = 49/695 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L ++I+ + Y+ +PII D YD L R + +P+ +D P KIGG Sbjct: 7 IKELRKQINEANYLYHTKDQPIISDFVYDGLMRELIELETKYPEY---DDETSPTKKIGG 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + + K TH++P +SL I+N E+L+ F RI QK N+ FT E KIDG +T Sbjct: 64 VVLDAFKKHTHTVPMMSLSNIFNKEELKVFYDRI----QKVIPNT-SFTTELKIDGLAVT 118 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YEKG F AA RG+G GED++ ++ I T+P L L+ P IEVRGE+Y+S F Sbjct: 119 LIYEKGIFKKAATRGNGVVGEDITENVKTIKTLP--LQLSKPLDIEVRGEIYMSHKTFKE 176 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259 +N E + NPRNAA+G +R+L+ + R L+ F + + S F Q E L+ Sbjct: 177 VNLERANSNLDLFVNPRNAAAGTVRQLDSKVVAKRRLDLFTYTVVGASN-FNSTQKETLE 235 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + LGFPVN + + + + +R TLPYD DG+V KV++F + +G A Sbjct: 236 FLSELGFPVNPHYKLVDNLDALSDAIDNYDILRKTLPYDTDGVVIKVNQFEHYETIGYTA 295 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 + P++ ++KF ++ T++ DI Q+GRTG++TPVA L PV I G+L++ ATLHNEDYI Sbjct: 296 KYPKYAGAYKFEAEKQITKVEDIIFQVGRTGVITPVAVLTPVFISGSLVSRATLHNEDYI 355 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 +DIR+ D+VLV +AGE+IP+V+++++ R A PF CP C+S Sbjct: 356 L-----------NKDIRIDDQVLVHKAGEIIPEVIEVVLGSRTNQA-PFEMVKHCPACES 403 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 +VR K G+ A + C C + + L HF SR A +I+ LG++ ++ D Sbjct: 404 NLVR----KQGE--ADYYCAND-NCPGKNVFGLIHFASRAAMDIDTLGEKVVELL---HD 453 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 + IP DI+ L T ++E + GFG V L ++I + +L+R IF LGI Sbjct: 454 QTYLQTIP-DIYKL----HTFKDQLEELPGFGKKKVEKLLNAIEASKMQTLDRLIFGLGI 508 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 ++VGA++A++L +Y S A + + LI++P +G IA ++ ++ N Sbjct: 509 KNVGAKVAKTLLNHYPSITLLA----------DAKYEDLIQIPDIGPEIADSVTTYFSNE 558 Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 N +E L + + + K V TGTL R +A + + +LG VS Sbjct: 559 SNQHMLEELKNLGLQMTYKIDVVTTHPFNGKTFVVTGTLDDFSRTEASDIIEKLGGKVSG 618 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +S+KTD ++ G GSKL KA +LG+++M+E F Sbjct: 619 SVSKKTDYVLAGKEAGSKLTKALELGIEVMDEATF 653 >gi|15676564|ref|NP_273708.1| DNA ligase [Neisseria meningitidis MC58] gi|161869603|ref|YP_001598770.1| DNA ligase [Neisseria meningitidis 053442] gi|304388085|ref|ZP_07370214.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091] gi|81784869|sp|Q9K0E3|DNLJ_NEIMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359266|sp|A9M2U7|DNLJ_NEIM0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|7225892|gb|AAF41084.1| DNA ligase [Neisseria meningitidis MC58] gi|161595156|gb|ABX72816.1| DNA ligase [Neisseria meningitidis 053442] gi|304337942|gb|EFM04082.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091] gi|316983632|gb|EFV62613.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76] gi|325139885|gb|EGC62416.1| DNA ligase, NAD-dependent [Neisseria meningitidis CU385] gi|325200648|gb|ADY96103.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76] Length = 841 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 267/825 (32%), Positives = 406/825 (49%), Gaps = 169/825 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV + K DF+ALN Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMLKADFVALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQDGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y M+ R LPY+IDG+V KV+ + Q +LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D + Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++T+ T Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556 Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562 + + SV N+ I + L RF+F+LGIRHV Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPELARFLFALGIRHVGERTAK 616 Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 G +ARS+A ++ + A I+ ++A Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675 Query: 597 SLIRVPL-----------------VGDIIAQAIVEF-----------------YQNPRNI 622 + +P + + AQA+ E +Q R+ Sbjct: 676 QAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEGLQTDKALPTDWQAWRSE 735 Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ALL+ + PS + ++ + K V TGTL ++R +AQ + Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840 >gi|121634462|ref|YP_974707.1| DNA ligase [Neisseria meningitidis FAM18] gi|166216218|sp|A1KSS7|DNLJ_NEIMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120866168|emb|CAM09908.1| putative DNA ligase [Neisseria meningitidis FAM18] Length = 841 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 267/825 (32%), Positives = 405/825 (49%), Gaps = 169/825 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV + K DF+ALN Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMLKADFVALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQDGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y M+ R LPY+IDG+V KV+ + Q +LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D + Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++T+ T Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556 Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562 + + SV N+ I + L RF+F+LGIRHV Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPELARFLFALGIRHVGERTAK 616 Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 G +ARS+A ++ + A I+ ++A Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675 Query: 597 SLIRVPL-----------------VGDIIAQAIVEF-----------------YQNPRNI 622 + +P + + AQA+ E +Q R+ Sbjct: 676 QAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEGLQTDKALPTDWQAWRSE 735 Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ALL+ + PS + ++ + K V TGTL ++R +AQ + Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840 >gi|240013546|ref|ZP_04720459.1| putative DNA ligase [Neisseria gonorrhoeae DGI18] gi|240120618|ref|ZP_04733580.1| putative DNA ligase [Neisseria gonorrhoeae PID24-1] Length = 823 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 275/844 (32%), Positives = 412/844 (48%), Gaps = 176/844 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P I D+EYD L R +A+ P+L + P+ P ++G Sbjct: 10 ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F Q+ D + + +EPK Sbjct: 64 GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV Sbjct: 124 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT-SEI 249 + K DF ALN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + + Sbjct: 184 MLKADFAALNQRQTENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGL 242 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ + L + LGF + NG F I +++Y M+ R LPY+IDG V KV Sbjct: 243 IAEEHIQELAYFQALGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 300 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 301 NSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 360 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 361 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 409 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 410 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 465 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 466 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 519 Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549 TLQ+ ++T+ EN G GD+S N+ I + Sbjct: 520 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 579 Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577 L RF+F+LGIRHVG +ARS+A ++ Sbjct: 580 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 639 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615 + A I+ ++A + +P + + AQA+ E Sbjct: 640 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 698 Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654 +Q R+ ALL+ + PS + ++ + K V Sbjct: 699 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 758 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + Sbjct: 759 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 818 Query: 715 LFLL 718 L LL Sbjct: 819 LTLL 822 >gi|240015985|ref|ZP_04722525.1| putative DNA ligase [Neisseria gonorrhoeae FA6140] gi|240112339|ref|ZP_04726829.1| putative DNA ligase [Neisseria gonorrhoeae MS11] Length = 823 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 275/844 (32%), Positives = 413/844 (48%), Gaps = 176/844 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P I D+EYD L R +A+ P+L + P+ P ++G Sbjct: 10 ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F Q+ D + + +EPK Sbjct: 64 GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV Sbjct: 124 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K DF LN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F Sbjct: 184 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 242 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ + L + LGF + NG F I +++Y M+ R LPY+IDG+V KV Sbjct: 243 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGMVVKV 300 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 301 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 360 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 361 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 409 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 410 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 465 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 466 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 519 Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549 TLQ+ ++T+ EN G GD+S N+ I + Sbjct: 520 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 579 Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577 L RF+F+LGIRHVG +ARS+A ++ Sbjct: 580 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 639 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615 + A I+ ++A + +P + + AQA+ E Sbjct: 640 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 698 Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654 +Q R+ ALL+ + PS + ++ + K V Sbjct: 699 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 758 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + Sbjct: 759 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 818 Query: 715 LFLL 718 L LL Sbjct: 819 LTLL 822 >gi|254493140|ref|ZP_05106311.1| DNA ligase [Neisseria gonorrhoeae 1291] gi|268598398|ref|ZP_06132565.1| DNA ligase [Neisseria gonorrhoeae MS11] gi|226512180|gb|EEH61525.1| DNA ligase [Neisseria gonorrhoeae 1291] gi|268582529|gb|EEZ47205.1| DNA ligase [Neisseria gonorrhoeae MS11] Length = 829 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 275/844 (32%), Positives = 413/844 (48%), Gaps = 176/844 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P I D+EYD L R +A+ P+L + P+ P ++G Sbjct: 16 ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 69 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F Q+ D + + +EPK Sbjct: 70 GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 129 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV Sbjct: 130 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 189 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K DF LN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F Sbjct: 190 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 248 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ + L + LGF + NG F I +++Y M+ R LPY+IDG+V KV Sbjct: 249 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGMVVKV 306 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 307 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 366 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 367 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 415 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 416 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 471 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 472 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 525 Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549 TLQ+ ++T+ EN G GD+S N+ I + Sbjct: 526 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 585 Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577 L RF+F+LGIRHVG +ARS+A ++ Sbjct: 586 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 645 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615 + A I+ ++A + +P + + AQA+ E Sbjct: 646 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 704 Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654 +Q R+ ALL+ + PS + ++ + K V Sbjct: 705 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 764 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + Sbjct: 765 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 824 Query: 715 LFLL 718 L LL Sbjct: 825 LTLL 828 >gi|313106533|ref|ZP_07792762.1| DNA ligase [Pseudomonas aeruginosa 39016] gi|310879264|gb|EFQ37858.1| DNA ligase [Pseudomonas aeruginosa 39016] Length = 794 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 219/623 (35%), Positives = 336/623 (53%), Gaps = 50/623 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A + ++ L E+ H+ YY +P I D+EYD L R A+ +P L P+ P Sbjct: 5 QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR--------FWQKKDDNSI 126 ++ G + +V H IP LSL + +DL F R+ + Sbjct: 62 TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 ++ EPK+DG +++ YE+G+ V A RGDG +GED+++ +R I +P ++ PEI+ Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEV++SK F ALN + + G K +ANPRNAA+G LR+L+ +R L F +G G Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S + Q +L+ R G P++ +R YY+++ R L Y+IDG+V+ Sbjct: 242 QVSGTLSDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG RAR PRW I+HKF ++ T LL ++ Q+GRTG +TPVARL+PV + Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D + L +R+GD V+++RAG+VIP+V+ +++ R D Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSR 478 AQ P CP+C S V R K K A +RC G L+C AQ + + HFVSR Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG + ++ D + PAD++TL Q + + GF ++S NL Sbjct: 471 RAMDIDGLGDKIVEQLV---DRGL-VASPADLYTLTYEQ------VFELEGFAELSTNNL 520 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I R SL RFIF+LGI VG E A+ LA+ S + + + ++ + Sbjct: 521 LAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572 Query: 599 IRVPLVGDIIAQAIVEFYQNPRN 621 +P VG +A I F+ + N Sbjct: 573 --LPDVGAEVAYEIHNFFADEHN 593 Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%) Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL FI L I + A A LA + S ++ II DWL L +V + + Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGS-------LDGII---RADWLDLRQVERLPERA 673 Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660 A+++ +F+ P N+ A+EA L+E G H ++ +E L V TGTL+ Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLRE----FGMHWQSERKAVEGLPLAGQIWVLTGTLEA 729 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R A++ + LGA V+ +S KT ++ G GSKL KA +LGVK+++E+ L L + Sbjct: 730 MSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDE 789 Query: 721 YNTT 724 + Sbjct: 790 HGVA 793 >gi|224539983|ref|ZP_03680522.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus DSM 14838] gi|224518409|gb|EEF87514.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus DSM 14838] Length = 694 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 236/708 (33%), Positives = 378/708 (53%), Gaps = 52/708 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A++++ L E+ H+ YY + P I D E+D + R + P+ +D P Sbjct: 32 AKEKIDQLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQDMEREHPEY---QDETSPTM 88 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +VTH P LSL ++ ++ F R QK + E K DG Sbjct: 89 RVGSDLNKNFTQVTHKYPMLSLGNTYSEGEVSDFYDRT----QKALNEDFEICAELKYDG 144 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE GK + A RGDG G+DV+ ++ I TIP VL + P++ E+RGE+ + Sbjct: 145 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPQLFEIRGEILMPWE 204 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + +R L+ +++ L E+ G Y Sbjct: 205 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 263 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQK GF +++ +++ ++ + Y + + R LP DG+V KV+ QK L Sbjct: 264 ENLQKAAQWGFKISDHMKKCHSLQEVFDYIHYWDTERKNLPVATDGIVLKVNSLKQQKNL 323 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 324 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 383 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFC 434 D I+GL D+ VGD V V++ GE+IPK+ + + R + F + C Sbjct: 384 ADIIEGL-----------DLHVGDMVYVEKGGEIIPKITGVDKDARSMMVGEKVKFITHC 432 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S+++R G+ AAH C AC Q +++HF+SR A NI+GLG + +D F Sbjct: 433 PECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 486 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ I+ AD++ L + I+N+ GD S N+ I + + + ER + Sbjct: 487 YR----LGLIKDTADLYKL------TVDDIKNLDRMGDKSAENIVKGIAQSKEVPFERAL 536 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG +A+ +AK + + N D LI + +G+ IAQ+I+ Sbjct: 537 FALGIRFVGETVAKKIAKSFTDIEEL----------ENADLERLINIDEIGEKIAQSIIS 586 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671 ++ NP N +E LK R E+++S ++ + +V +G R + ++ + Sbjct: 587 YFANPLNRELIER-LKIAGLQFSRKEEDLSGYTDKLAGQSIVISGVFTHHSRDEYKDLIE 645 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ G+N G +KLEKAQ+LGV+IM+E++FL L+ Sbjct: 646 KNGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVQIMSEDEFLALI 693 >gi|325141882|gb|EGC64324.1| DNA ligase, NAD-dependent [Neisseria meningitidis 961-5945] Length = 841 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 271/822 (32%), Positives = 407/822 (49%), Gaps = 163/822 (19%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALERNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 + AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV + K DF ALN Sbjct: 161 IQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y M+ R LPY+IDG+V KV+ + Q +LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 393 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 394 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAEAPAANQTQSVPLYKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA--FSIRIPADIFTLQRRQQTS--TTKIE 525 + L HF SR A +I+GLG++Q++ ++D F+ DI TLQ+ ++T+ T Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLV-AQDLVLHFADLYRLDIPTLQKMKETADKTVAES 559 Query: 526 NILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV--------- 562 + + SV N+ I + L RF+F+LGIRHV Sbjct: 560 DQMPSEGSSVGASGKHKKQPVKWAENILAGIESGKTPELARFLFALGIRHVGERTAKTLA 619 Query: 563 -----------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 G +ARS+A ++ + A I+ ++A + Sbjct: 620 QAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQTQAV 678 Query: 600 RVP-----------------LVGDIIAQAI-------VEFYQN--------------PRN 621 +P + + AQA+ +E QN P+N Sbjct: 679 TIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSEPQN 738 Query: 622 ICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +E L + PS + ++ + K V TGTL ++R +AQ + G Sbjct: 739 AALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGK 798 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS +S+KTD ++ G+ GSKLEKA LGV I++E + L LL Sbjct: 799 VSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLTLL 840 >gi|304317508|ref|YP_003852653.1| DNA ligase, NAD-dependent [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779010|gb|ADL69569.1| DNA ligase, NAD-dependent [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 659 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 235/710 (33%), Positives = 383/710 (53%), Gaps = 52/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IE+ KEL + ++++H+ YY +P I D EYD + R + P+ + P Sbjct: 1 MTIEERIKEL---KDKLNHHNYMYYVLDRPEISDYEYDMMMRELIKLEEEHPEF---KTP 54 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE TH + SL ++ +LR F R+ + + + +E Sbjct: 55 DSPTQRVGGEPVKEFEPFTHVVVMQSLANAFSEGELRDFDRRV-----RSSVGDVEYVVE 109 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + + YE G F + RGDG GE+V+ ++ I +IP L N+ I VRGEV Sbjct: 110 LKIDGLSVELIYENGIFTIGSTRGDGFVGENVTNNLKTIKSIPLRLKDNLNLI--VRGEV 167 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ + F LN+E G +ANPRNAA+G LR+LNP R L+ FV L + + Sbjct: 168 FMPRASFEKLNEERELNGESLFANPRNAAAGSLRQLNPKITAKRDLDIFVFNLQRIEGVE 227 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K E L+ ++ GF V+ +++ ++ N +++IR +LPYD DG V KV++ Sbjct: 228 LKTHVEALEFLKEQGFKVSPHLKKCKNIDEVIEDINYIRTIRDSLPYDTDGAVVKVNDLE 287 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG + PRW I+ K+ ++ T++ DI +Q+GRTG LTP A LEPV I G++++ Sbjct: 288 KREILGSTVKDPRWAIAFKYPAERQKTKVKDIIVQVGRTGALTPTAILEPVKIAGSIVSR 347 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYIK +DIR+GD V++++AGE+IP+VV ++V +R + F Sbjct: 348 ATLHNEDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVSVVVEDRKGHEKNFFM 396 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C + VR G+ A RCT GL C A+ + HF S+DA +I+GLG Sbjct: 397 PDTCPECGATTVR----LPGE--AVTRCT-GLNCPAKLKRGIIHFASKDAMDIDGLGPAV 449 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + I AD++ L+ ++ GD SV NL ++I + + L Sbjct: 450 IGQLLDNH----LIHNIADLYYLKYDDLIKLDRM------GDKSVKNLLNAIEESKGRDL 499 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +R IF LGI +G++ A LA ++ + + + + L + VG +A Sbjct: 500 DRVIFGLGIDLIGSKAASILANHFKTMDSLEEA----------SFDELTNIEEVGPKMAD 549 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I+ F++ +N ++ L + + + +N S+ + V TGTL R +A++ + Sbjct: 550 SIIAFFKEKQNKEILDKLKEAGVNMVKKKSENTSNIFDGLTFVLTGTLSNYTRDEAKKLI 609 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G V+ +S+KT+ ++ G +PGSKL KAQQLGVK+++EE+F +L+Q Sbjct: 610 EERGGKVTGSVSKKTNYVVAGTDPGSKLSKAQQLGVKVIDEEEFENMLKQ 659 >gi|189465636|ref|ZP_03014421.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM 17393] gi|189437910|gb|EDV06895.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM 17393] Length = 665 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 236/708 (33%), Positives = 377/708 (53%), Gaps = 52/708 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A++++ L E+ H+ YY + P I D E+D + R + P+ +D P Sbjct: 3 AKEKIDQLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQEMEREHPEY---QDETSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++N + +VTH P LSL ++ ++ F R QK + E K DG Sbjct: 60 RVGSDLNKNFTQVTHKYPMLSLGNTYSEGEVSDFYDRT----QKALNEDFEICAELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE GK + A RGDG G+DV+ ++ I TIP VL + P++ E+RGE+ + Sbjct: 116 TSISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGDYPQLFEIRGEILMPWK 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + +R L+ +++ L E+ G Y Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQK GF +++ +++ ++ + Y + + R LP DG+V KV+ QK L Sbjct: 235 ENLQKAAQWGFKISDHMKKCHSLQEVFDYIHYWDTERKNLPVATDGIVLKVNSLKQQKNL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFC 434 D I+GL D+ VGD V V++ GE+IPK+ + + R + F + C Sbjct: 355 ADIIEGL-----------DLHVGDMVYVEKGGEIIPKITGVDKDARSMMVGEKVKFITHC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S+++R G+ AAH C AC Q +++HF+SR A NI+GLG + +D F Sbjct: 404 PECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ I+ D++ L + I+N+ GD S N+ I + R + ER + Sbjct: 458 YR----LGLIKDTTDLYKL------TVDDIKNLDRMGDKSAENIVKGIAQSREVPFERAL 507 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG +A+ +AK + + N D LI + +G+ IAQ+I+ Sbjct: 508 FALGIRFVGETVAKKIAKSFTDIEEL----------ENADLERLINIDEIGEKIAQSIIS 557 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671 ++ NP N +E LK R E+++S ++ + +V +G R + ++ + Sbjct: 558 YFANPLNRELIER-LKIAGLQFSRKEEDLSGYTDKLVGQSIVISGVFTHHSRDEYKDLIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ G+N G +KLEKAQ+LGV+IM+E++FL L+ Sbjct: 617 KNGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVQIMSEDEFLALI 664 >gi|120434999|ref|YP_860685.1| DNA ligase [Gramella forsetii KT0803] gi|166215777|sp|A0LZ23|DNLJ_GRAFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|117577149|emb|CAL65618.1| DNA ligase [Gramella forsetii KT0803] Length = 664 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/712 (32%), Positives = 381/712 (53%), Gaps = 57/712 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + K++ L +E+ H+ YY KP I D E+D + + +P+ ED N P Sbjct: 2 EVEKKIRGLREELQQHNYNYYVLDKPQISDYEFDIKLKELQELEEKYPEF---EDDNSPT 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + + V H SL ++ E+L ++ R+ + + K I + E K D Sbjct: 59 RRVGGAVTKNFETVVHENRMYSLSNSYSKEELEEWEARLKKIVEGK----IQYVCELKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I++ YE G A RGDG G+DV+ I+ I ++P L P ++RGE+ + Sbjct: 115 GASISLTYENGILKRAVTRGDGFQGDDVTNNIKTIRSVPLKLKDEFPHKFDIRGEIVLPY 174 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL-GKTSEIFAKG 253 F +N E + +G +PYANPRN ASG L+ + ++ R L ++ + G+ + + + Sbjct: 175 EGFAKMNAERVEMGEEPYANPRNTASGSLKLQDSAEVARRPLECLLYSITGENTGVAS-- 232 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q+E L+K R GF V ++ ++ Y N R LPY+ DG+V KV+ F Q+ Sbjct: 233 QFEGLEKARKWGFKVPAESELKDSIEEVLHYINYWDEHRHDLPYETDGVVVKVNNFHQQE 292 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF +Q ST+L I Q+GRTG +TPVA L+ V + G ++ A+L Sbjct: 293 ELGHTAKSPRWAIAYKFKAEQESTKLNKITYQVGRTGAITPVANLDAVQLAGTVVRRASL 352 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L D+R GD V V++ GE+IPK+V + +R PD+ P + + Sbjct: 353 HNADQIEKL-----------DVREGDTVFVEKGGEIIPKIVGVDFTKRDPDSNPTQYATN 401 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S ++R K G+ A H C C Q + R++H++SR A +IEGLG + + Sbjct: 402 CPECDSELIR----KDGE--AQHYCPNVNGCPPQIIGRIQHYISRKAMDIEGLGGETVAL 455 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ I AD++ LQ+ + ++ + S NL + I + + I ER Sbjct: 456 LVNAD----LIESYADLYKLQKEEVLPLERM------AEKSAENLINGIERSKEIPFERV 505 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR+VG +A+ LAK++ S I ++A + ++ L+ + +G+ IA ++V Sbjct: 506 LFALGIRYVGETVAKKLAKHFKS-------IEALMAASEEE---LVNIDEIGERIAWSVV 555 Query: 614 EFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 EF+ N VE L + E+S ++ N+ +E V +G +K+ R+ ++ Sbjct: 556 EFFNIEANRENVERLKEYGIQLEISAEKLANQTNI---LEGNTFVISGVFEKVSRNDLKK 612 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + G +S+ +S KT+ ++ GDN G SKL KA++LG I++EE FL +L+ Sbjct: 613 MIEDNGGKLSSSISSKTNYLVAGDNMGPSKLAKAEKLGTSIISEEDFLKMLE 664 >gi|254411541|ref|ZP_05025318.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420] gi|196182042|gb|EDX77029.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420] Length = 676 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 245/721 (33%), Positives = 387/721 (53%), Gaps = 60/721 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +++Q +EL +L Q+ SY YY P++ D+ YD L R + +P+L P+ Sbjct: 3 NVKQRVQELRNLLQQASY---AYYVRDNPMMEDAVYDQLYRELQDLESQYPELV---TPD 56 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G + V H+IP SLE +N+E+L K+ R R+ D ++ + E Sbjct: 57 SPTQRVGEKPASEFSSVRHNIPLYSLENAFNLEELAKWQERWQRY--APDVKNVEYVCEL 114 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-IIEVRGEV 191 KIDG+ I + Y+ G V RGDG +GED++ IR I +IP LS P I+EVRGE Sbjct: 115 KIDGSAIALTYKDGVLVRGVTRGDGVTGEDITQNIRTIRSIPLRLSTETPPPIVEVRGEA 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGL----GKT 246 ++ + F +N E A G +ANPRNAA+G LR+L+P + R L+FF + L + Sbjct: 175 FLPLDVFEGINREREAAGEALFANPRNAAAGTLRQLDPKIVDRRQLDFFAYTLHLPGSEE 234 Query: 247 SEIFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 E K Q+E L+ +R LGF VN ++ + + YY S R LPY DG+V Sbjct: 235 QETVPTLKSQWEALEFLRDLGFRVNPNRKRCASLAEVEEYYQYWDSQRRDLPYMTDGVVV 294 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K++ FSLQ+QLG + PRW I+ K+ +++ T + ++ +Q+GRTG LTPVA L+PV + Sbjct: 295 KLNSFSLQEQLGFTQKFPRWAIALKYPAEESPTLVQNVTVQVGRTGALTPVAELKPVQLA 354 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ ATLHN D I+ L ++ +GD V+V++AGE+IP+VV ++ R P+ Sbjct: 355 GTTVSRATLHNRDRIEEL-----------NLHLGDTVIVRKAGEIIPEVVRVLPELRPPE 403 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+P P+ CP+C VVR G+ A RC +C A L H+ SR A +I Sbjct: 404 AKPVQMPTDCPVCHQPVVR----PPGE--AVTRCINA-SCPAIVKGSLNHWASRGALDIN 456 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ ++ S + AD++ L Q T N+ G+ S L + I + Sbjct: 457 GLGEKLVNQLVDS----GLVHSVADLYQLTLDQLT------NLERMGEKSAQKLINQIEQ 506 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R ++ LGIR+VG A+ LA+ + S ++ + A D S+ + Sbjct: 507 SNTQPWSRVLYGLGIRYVGTVNAQILAQQFPS-------VDQLAAARVTDIESVYG---I 556 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQ 659 G IAQ++ ++++ P N + L+E + + K S+E ++ K V TGTL Sbjct: 557 GSEIAQSVNDWFRVPSNQTLINR-LREANLQLAGEPKVASAEAKSQPLQGKTFVITGTLP 615 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++R A++ + G V++ +S KTD ++VG++ GSKLEKAQ+LG+ ++E L L Sbjct: 616 TLKRDDAKKLIQNAGGKVTSSVSSKTDYVLVGEDAGSKLEKAQELGINQISESDLLQWLN 675 Query: 720 Q 720 + Sbjct: 676 E 676 >gi|325131881|gb|EGC54581.1| DNA ligase, NAD-dependent [Neisseria meningitidis M6190] Length = 841 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 266/825 (32%), Positives = 405/825 (49%), Gaps = 169/825 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV + K DF+ALN Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMLKADFVALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQDGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y M+ R LPY+IDG+V KV+ + Q +LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D + Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522 + L HF SR A +++GLG++Q++ + +R AD++ TLQ+ ++T+ T Sbjct: 501 QGLIHFASRKAMDLDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556 Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562 + + SV N+ I + L RF+F+LGIRHV Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPELARFLFALGIRHVGERTAK 616 Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 G +ARS+A ++ + A I+ ++A Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675 Query: 597 SLIRVP-----------------LVGDIIAQAIVEF-----------------YQNPRNI 622 + +P + + AQA+ E +Q R+ Sbjct: 676 QAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEGLQTDKALPTDWQAWRSE 735 Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ALL+ + PS + ++ + K V TGTL ++R +AQ + Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840 >gi|291544905|emb|CBL18014.1| DNA ligase, NAD-dependent [Ruminococcus sp. 18P13] Length = 660 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 236/710 (33%), Positives = 379/710 (53%), Gaps = 61/710 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + EQA+ L+ L +EI H+ YY P I D +YDAL R AI +P L P Sbjct: 1 MDFEQAKLRLAQLTKEIEQHNYAYYVLDAPTIEDCDYDALMRELKAIETEYPQLL---SP 57 Query: 72 NGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++GG M LS F KVTH++ SL +++ E++ F+ Q+K D + FT+ Sbjct: 58 HSPSQRVGG-MALSDFQKVTHTVQMGSLRDVFSFEEVAAFVAE----CQQKLD-APRFTV 111 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 EPKIDG +++ YE G + RGDG GEDV+ IR I +IP L + P ++EVRGE Sbjct: 112 EPKIDGLSVSLLYENGVLTCGSTRGDGFVGEDVTGNIRTIRSIPLRLE-DAPALLEVRGE 170 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ ++ FL L ++ +P+ NPRNAA+G LR+ + ++T R L+ FV + + + Sbjct: 171 VFMPRDSFLKLVEQQELADEQPFKNPRNAAAGSLRQKH-AEVTAKRRLDIFVFNVQQMTG 229 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E L MR LGF R T+ I + + R+ LPYDIDG+V KV++ Sbjct: 230 GLHGTHAESLTWMRKLGFKTVE-FRLCETYQEIREQISRIGEERAKLPYDIDGVVIKVND 288 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + ++ +G + P+W +++KF ++ TRL I++ +GRTG +TPVA +P+ + G + Sbjct: 289 LAQRQVMGATTKVPKWAVAYKFPPEEKETRLQKIEVNVGRTGAITPVAVFDPITLAGTSV 348 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A LHN+ +I +DIRVGD + V++AGE+IP+V+ + ++ PD+ P+ Sbjct: 349 SRAVLHNQQFI-----------ADKDIRVGDMIRVRKAGEIIPEVLASVSHQ--PDSVPY 395 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + P+ CP+C + VRD P+ L RC C AQ L+ + HF S+ A NI+G+G Sbjct: 396 TLPTHCPVCGTEAVRD--PEESVL----RCP-NTDCPAQLLKNVIHFASKGAMNIDGMGP 448 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG---FGDVSVTNLYDSINKR 545 + IR AD++TL +E++L F + S NL D+I K Sbjct: 449 AIAQALLDNG----KIRSVADLYTL---------TMEDLLSLDRFAEKSARNLLDAIEKS 495 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ L+R IF LGIR +G A L + S + N L + G Sbjct: 496 KSAPLDRVIFGLGIRGIGQRAAVLLCDRFPSVEQIM----------NASVEQLAEIDGFG 545 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+A+++V+ ++ P + V+ L + + V TGTL ++R + Sbjct: 546 SIMAESVVQAFREPHRVALVQRLQACGVTMQYQAAQAQDQRFVGMTFVLTGTLPTMKRDE 605 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 A++ + G VS +S+KT +++ G++ GSKL KA+ LGV++++E + L Sbjct: 606 AKKLIESFGGKVSGSVSKKTSVVVAGEDAGSKLMKAESLGVEVIDEAELL 655 >gi|15596726|ref|NP_250220.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAO1] gi|107100960|ref|ZP_01364878.1| hypothetical protein PaerPA_01001990 [Pseudomonas aeruginosa PACS2] gi|218892513|ref|YP_002441382.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa LESB58] gi|81541359|sp|Q9I3I4|DNLJ_PSEAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781394|sp|B7UVJ3|DNLJ_PSEA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|9947487|gb|AAG04918.1|AE004581_5 DNA ligase [Pseudomonas aeruginosa PAO1] gi|218772741|emb|CAW28526.1| DNA ligase [Pseudomonas aeruginosa LESB58] Length = 794 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 219/623 (35%), Positives = 335/623 (53%), Gaps = 50/623 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A + ++ L E+ H+ YY +P I D+EYD L R A+ +P L P+ P Sbjct: 5 QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR--------FWQKKDDNSI 126 ++ G + +V H IP LSL + +DL F R+ + Sbjct: 62 TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 ++ EPK+DG +++ YE+G+ V A RGDG +GED+++ +R I +P ++ PEI+ Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEV++SK F ALN + + G K +ANPRNAA+G LR+L+ +R L F +G G Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S Q +L+ R G P++ +R YY+++ R L Y+IDG+V+ Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG RAR PRW I+HKF ++ T LL ++ Q+GRTG +TPVARL+PV + Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D + L +R+GD V+++RAG+VIP+V+ +++ R D Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSR 478 AQ P CP+C S V R K K A +RC G L+C AQ + + HFVSR Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG + ++ D + PAD++TL Q + + GF ++S NL Sbjct: 471 RAMDIDGLGDKIVEQLV---DRGL-VASPADLYTLTYEQ------VFELEGFAELSTNNL 520 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I R SL RFIF+LGI VG E A+ LA+ S + + + ++ + Sbjct: 521 LTAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572 Query: 599 IRVPLVGDIIAQAIVEFYQNPRN 621 +P VG +A I F+ + N Sbjct: 573 --LPDVGAEVAYEIHNFFADEHN 593 Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%) Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL FI L I + A A LA + S ++ II DWL L +V + + Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGS-------LDGII---RADWLDLRQVERLPERA 673 Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660 A+++ +F+ P N+ A+EA L+E G H ++ +E L V TGTL+ Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLRE----FGMHWQSERKAVEGLPLAGQTWVLTGTLEA 729 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R A++ + LGA V+ +S KT ++ G GSKL KA +LGVK+++E+ L L + Sbjct: 730 MSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDE 789 Query: 721 YNTT 724 + Sbjct: 790 HGVA 793 >gi|332970926|gb|EGK09901.1| NAD-dependent DNA ligase LigA [Kingella kingae ATCC 23330] Length = 785 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 268/816 (32%), Positives = 407/816 (49%), Gaps = 141/816 (17%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S Q + ++ L + ++ + YY P + DSEYD L R + + FP P Sbjct: 1 MSNTQIQNQIKHLTEILNRYAHEYYTLDAPSVPDSEYDKLYRELEQLERDFPYF---RLP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLR------KFITRIYRFWQKKDDNS 125 P N++GG + V H++P LSL ++ D + + R + + Sbjct: 58 ESPTNRVGGAILSEFASVRHAVPMLSLNNAFSPRDESGAYDHAETLAFNERVCKDLNQAQ 117 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI 184 +T+EPK DG +++ Y+ G F+ AA RGDG GEDV+ I+ + IP ++ NIP + Sbjct: 118 TEYTIEPKFDGLAVSLLYQNGIFIQAATRGDGTIGEDVTENIKTVRNIPLKLHGKNIPNL 177 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 IEVRGEV + K DF LN A G+KP+ANPRNAA+G LR+LN R L+FF +G+ Sbjct: 178 IEVRGEVLMLKADFATLNARQEAAGQKPFANPRNAAAGSLRQLNSRVAAERKLHFFGYGI 237 Query: 244 GKTSEIFAKGQY--EMLQKMRCLGF--PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + + Q E L ++ LGF P N AN ++ Y ++ R LPY+I Sbjct: 238 ARLDGVENPPQTHAEELLWLQELGFSLPTGNWHICANIAE-VLQQYEQLAEKRPNLPYEI 296 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV+ Q++LG +R+PRW I+HKF ++A T + ID+Q+GRTG +TPVARL+ Sbjct: 297 DGMVIKVNSLIEQEKLGFVSRAPRWAIAHKFPAEEAITIVEAIDVQVGRTGAITPVARLQ 356 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +++ Sbjct: 357 PVAVGGVVVTNATLHNQD---------EVAR--KDVRVGDSVIVRRAGDVIPEVVRVVLE 405 Query: 420 ER----------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463 R P F P CP+C S + R+ G+ VA RC+GG+ Sbjct: 406 RRPMVQELGADLFSETVEKPKFSAFRLPELCPVCNSPIERE----DGEAVA--RCSGGML 459 Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED-PAFSIRIPADIFTLQR---RQQT 519 C AQ+ + L HF +R A +I GLG +Q++ + + +F+ DI LQ+ + + Sbjct: 460 CQAQRAQGLIHFSARKAMDIVGLGDRQIEALVEQDVLHSFADIYQLDIAKLQKIKDSKSS 519 Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH------------------ 561 +T ENIL I R L RF+F+LGIRH Sbjct: 520 ATKWAENIL-----------TGIENSRKPLLSRFLFALGIRHVGESTAKQLANAFGDLAT 568 Query: 562 --------------VGAEIARSLAKYYL--SYQNFAQEI--------NNIIAHNNDD--- 594 +G +A+S+A Y+ + Q ++ + +++ N + Sbjct: 569 VRHAPEPILACLPDIGGVVAQSIAHYFRQPAQQKLLDDLLAVGVEPQHAVLSTNVREFAT 628 Query: 595 ---WLSLIRVPLVGDIIAQAIVEF-----------------YQNPRNICAVEALLKEVS- 633 W+S + + + AQ + + +QN NI ALL+EV Sbjct: 629 PARWISRLPNYKISEKRAQELWDLAGGSVEGLLSDKVLPIEWQNWCNIAENAALLREVGE 688 Query: 634 -----PSIG--RHEKNVSSEIEN----KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 P G E V + N K V TGTL ++R +A + G VS +S Sbjct: 689 FLAMLPEFGATNAENAVLGSLNNLIAGKTFVLTGTLPTLKRDEAAAMIEAAGGKVSGSVS 748 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +KTD ++ GD GSKLEKA LGV +++E++FL +L Sbjct: 749 KKTDFVVAGDAAGSKLEKALSLGVAVLSEDEFLAML 784 >gi|329959979|ref|ZP_08298475.1| DNA ligase [Bacteroides fluxus YIT 12057] gi|328533113|gb|EGF59882.1| DNA ligase [Bacteroides fluxus YIT 12057] Length = 665 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 242/709 (34%), Positives = 377/709 (53%), Gaps = 54/709 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A++++ L E+ H+ YY + P I D E+D + P+ +D N P Sbjct: 3 AKEKIDRLRAELHQHNYNYYVLNAPEISDKEFDDKMHELQNLEKEHPEY---QDENSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKID 135 ++G ++N + +V H P LSL ++ ++ F R+ KK N F E K D Sbjct: 60 RVGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYDRV-----KKTLNEDFEICCELKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 GT I++ YE GK + A RGDG G+DV+ ++ I TIP VL N P E+RGE+ + Sbjct: 115 GTSISLTYEDGKLIRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNYPRSFEIRGEILMPW 174 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A +ANPRNAASG L+ N + +R L+ +++ L E+ G Sbjct: 175 ESFEMLNREREAREEPLFANPRNAASGTLKSQNSAVVASRKLDAYLYYL-LGEELPCDGH 233 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ GF ++ ++A++ + Y N + R LP DG+V KV+ QK Sbjct: 234 YENLQMAGSWGFKISEHTKKASSLEEVFEYINYWDTERKNLPVATDGIVLKVNSLRQQKN 293 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LH Sbjct: 294 LGFTAKSPRWAIAYKFQAERALTRLNKVSYQVGRTGAVTPVANLDPVQLSGTVVKRASLH 353 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + N R + F + Sbjct: 354 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKNARGMLLGEKVRFITH 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C +R++R G+ AAH C AC Q R++HF+SR A NI+GLG + +D Sbjct: 403 CPECGNRLIR----YEGE--AAHYCPNETACPPQIKGRIEHFISRKAMNIDGLGPETVDM 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I+ AD++ L+ I+N+ G+ S N+ + I + + ER Sbjct: 457 FYR----LGLIKDTADLYDLK------ADDIKNLDRMGEKSAENIINGIAASKEVPFERV 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VG +A+ +AK + +I +I N D +L + +G+ IAQ+I+ Sbjct: 507 LFALGIRFVGETVAKKIAKSF-------TDIEELI---NTDLENLKNIDEIGEKIAQSII 556 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYV 670 ++ NP N V LK + R E+++S ++ + +V +G R + +E + Sbjct: 557 TYFSNPFNRELV-GRLKAAGLQLFRKEEDLSGYTDKLTGQSIVISGVFTHHSRDEYKELI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ G+N G +KLEKAQ+LGVKIM+E++FL L+ Sbjct: 616 EKNGGKNVGSISAKTSFILAGENMGPAKLEKAQKLGVKIMSEDEFLTLI 664 >gi|323705997|ref|ZP_08117567.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum LX-11] gi|323534611|gb|EGB24392.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum LX-11] Length = 659 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 238/710 (33%), Positives = 378/710 (53%), Gaps = 52/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IE KEL ++++H YY KP I D EYD + R + +P + P Sbjct: 1 MAIEDRIKELRD---KLNHHSYMYYVLDKPEISDYEYDMMMRELIELEEKYPQF---KTP 54 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE TH +P SL ++ +LR F R+ + + + +E Sbjct: 55 DSPTQRVGGEPLKEFEPFTHVVPMQSLANAFSEGELRDFDRRV-----RASVGDVEYVVE 109 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + + YE G F + RGDG GE+V+ ++ I +IP L ++ I VRGEV Sbjct: 110 FKIDGLSVELIYENGFFTVGSTRGDGIIGENVTNNLKTIKSIPLRLKDDLNLI--VRGEV 167 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 ++ K F LN+E G +ANPRNAA+G LR+LNP R L+ FV L + I Sbjct: 168 FMPKASFEKLNEERELNGESLFANPRNAAAGSLRQLNPKITAKRDLDIFVFNLQRIDGIE 227 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K E L+ ++ GF V+ ++ ++ N ++ IR +L Y+ DG V KV++ Sbjct: 228 LKTHAEALEFLKYQGFKVSPHIKVCGNIDEVIEDINYIRDIRDSLSYETDGAVVKVNDLE 287 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG A+ PRW I+ K+ ++ T++ DI +Q+GRTG LTP A LEPV I G++++ Sbjct: 288 KREILGSTAKDPRWAIAFKYPTERQKTKVKDIVVQVGRTGALTPTAILEPVKIAGSIVSR 347 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYIK +DIR+GD V++++AGE+IP+VV ++ ER + F Sbjct: 348 ATLHNEDYIK-----------EKDIRIGDTVIIQKAGEIIPEVVSVVAEERDGSEKFFIM 396 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C + VR G+ V +CT GL C A+ + HF S+DA +I+GLG Sbjct: 397 PEVCPECGAATVR----LPGESVT--KCT-GLNCPAKLKRGIIHFASKDAMDIDGLGPAV 449 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + I +D++ L+ ++ GD S NL ++I + + L Sbjct: 450 IGQLLDNH----LIHNISDLYYLKYDDLVKLDRM------GDKSAKNLINAIEESKGRDL 499 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +R IF LGI +G++ A LA ++ + ++ + + L + +G +A Sbjct: 500 DRLIFGLGIDLIGSKAAGILASHFKTMESLEKAT----------FEELTEIEEIGPKMAD 549 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++V F++ +N+ ++ L + NV+ + V TGTL+K R +A+ + Sbjct: 550 SVVAFFKEKQNLDIIDRLKAAGVNMRKKDAINVNDNFKGLTFVLTGTLEKYTRDEAKRLI 609 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G V+ +S+KTD ++VG +PGSKL KAQ+LGVKI+NEEQF +L+Q Sbjct: 610 EERGGKVTGSVSKKTDYVVVGADPGSKLSKAQELGVKILNEEQFENMLKQ 659 >gi|16329180|ref|NP_439908.1| NAD-dependent DNA ligase LigA [Synechocystis sp. PCC 6803] gi|7674015|sp|P72588|DNLJ_SYNY3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|1651660|dbj|BAA16588.1| DNA ligase [Synechocystis sp. PCC 6803] Length = 669 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 241/699 (34%), Positives = 380/699 (54%), Gaps = 63/699 (9%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P++ DS YD L R + P+L P+ P ++G + V H+I Sbjct: 20 AYYVLDAPVMEDSVYDQLYRELQRLEAENPELI---TPDSPTQRVGEQPASQFRSVAHNI 76 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQK--KDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 P SLE +N+++L+++ R WQ+ + E KIDG+ I + YE G V Sbjct: 77 PLYSLENAFNVQELQQWQER----WQRIAPTIEKAEYVCELKIDGSAIALTYENGLLVRG 132 Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 RGDG +GE++S I+ I +IP L+L N P +EVRGE ++ +F +N E A G Sbjct: 133 VTRGDGTTGEEISQNIKTIRSIPVKLNLDNPPPTVEVRGEAFLPLEEFNRINHEREAQGE 192 Query: 211 KPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL---GKTSEIFAKGQYEMLQKMRCLGF 266 +ANPRNAA+G LR+L+P + R L FF + L G+ +I + Q++ L+ ++ GF Sbjct: 193 SLFANPRNAAAGTLRQLDPKIVHQRRLQFFAYTLHLPGQEDKI--QSQWQALEYLKKAGF 250 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 VN + +V+Y+ + + R LPY DG+V K++++ LQ++LG + PRW I Sbjct: 251 MVNPHCQLCKGLDEVVAYFEDWEGARQRLPYMTDGVVVKINQYPLQRELGFTQKFPRWAI 310 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 + K+ ++ T + I++ +GRTG +TP+A +EPV + G + ATLHN+D I+ L Sbjct: 311 ALKYPAEETPTVVKAIEVNVGRTGAVTPLAVMEPVQLAGTTVQRATLHNQDRIQEL---- 366 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 DIRVGD V++++AGE+IP+VV ++ R + P+ FPS CP C S +VR L Sbjct: 367 -------DIRVGDTVIIRKAGEIIPEVVRVMTELRPENTTPYIFPSHCPACGSPLVRPLE 419 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 A RC +CSA L H+ SR+A +I+GLG++ + ++ + Sbjct: 420 E------AVIRCVNS-SCSAILQGSLIHWASRNALDIQGLGEKVVITLLENR----LVNS 468 Query: 507 PADIFTLQRRQQTSTTKIENILG---FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 AD++ LQ +E +LG F S L +I ++ R +F LGIRHVG Sbjct: 469 VADLYGLQ---------VEQLLGLERFAQKSAEKLIAAIEVSKSQPWSRILFGLGIRHVG 519 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 A+ L++ + + + +Q A D L V +G IA+A+V +++NP N Sbjct: 520 QVNAKLLSQQFPTVEKLSQ------ASIPD----LEGVYGIGPEIAEAVVNWFRNPGNQQ 569 Query: 624 AVEAL--LKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 ++ L L V + G K S +++ K V TGTL + R +AQE + Q G V++ Sbjct: 570 LIQDLEELGLVLANQGIDQTKTDSGKLKGKTFVLTGTLPNLSRLEAQELIEQSGGKVTSS 629 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +S KTD +++GD PGSK KA+ LG+K+++E +FL LL+ Sbjct: 630 VSTKTDYVLLGDKPGSKAAKAESLGIKLLSEAEFLQLLE 668 >gi|116049473|ref|YP_791724.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa UCBPP-PA14] gi|122258581|sp|Q02K12|DNLJ_PSEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115584694|gb|ABJ10709.1| DNA ligase [Pseudomonas aeruginosa UCBPP-PA14] Length = 794 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 219/623 (35%), Positives = 335/623 (53%), Gaps = 50/623 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A + ++ L E+ H+ YY +P I D+EYD L R A+ +P L P+ P Sbjct: 5 QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR--------FWQKKDDNSI 126 ++ G + +V H IP LSL + +DL F R+ + Sbjct: 62 TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 ++ EPK+DG +++ YE+G+ V A RGDG +GED+++ +R I +P ++ PEI+ Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEV++SK F ALN + + G K +ANPRNAA+G LR+L+ +R L F +G G Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S Q +L+ R G P++ +R YY+++ R L Y+IDG+V+ Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG RAR PRW I+HKF ++ T LL ++ Q+GRTG +TPVARL+PV + Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D + L +R+GD V+++RAG+VIP+V+ +++ R D Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSR 478 AQ P CP+C S V R K K A +RC G L+C AQ + + HFVSR Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG + ++ D + PAD++TL Q + + GF ++S NL Sbjct: 471 RAMDIDGLGDKIVEQLV---DRGL-VASPADLYTLTYEQ------VFELEGFAELSTNNL 520 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I R SL RFIF+LGI VG E A+ LA+ S + + + ++ + Sbjct: 521 LAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572 Query: 599 IRVPLVGDIIAQAIVEFYQNPRN 621 +P VG +A I F+ + N Sbjct: 573 --LPDVGAEVAYEIHNFFADEHN 593 Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%) Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL FI L I + A A LA + S ++ II DWL L +V + + Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGS-------LDGII---RADWLDLRQVERLPERA 673 Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660 A+++ +F+ P N+ A+EA L+E G H ++ +E L V TGTL+ Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLRE----FGMHWQSERKAVEGLPLAGQTWVLTGTLEA 729 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R A++ + LGA V+ +S KT ++ G GSKL KA +LGVK+++E+ L L + Sbjct: 730 MSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDE 789 Query: 721 YNTT 724 + Sbjct: 790 HGVA 793 >gi|308388851|gb|ADO31171.1| DNA ligase [Neisseria meningitidis alpha710] gi|325202538|gb|ADY97992.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240149] gi|325207712|gb|ADZ03164.1| DNA ligase, NAD-dependent [Neisseria meningitidis NZ-05/33] Length = 841 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 265/825 (32%), Positives = 404/825 (48%), Gaps = 169/825 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV + K DF ALN Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y +M+ R LPY+IDG+V KV+ + Q++LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D + Sbjct: 338 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTSTTKI 524 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++T+ + Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETTDKTV 556 Query: 525 ----------ENILGFGDVS------VTNLYDSINKRRNISLERFIFSLGIRH------- 561 ++ G N+ I + L RF+F+LGIRH Sbjct: 557 AESDQTPSEGSSVGASGKHKKQPVKWAENILGGIESGKTPELARFLFALGIRHVGERTAK 616 Query: 562 -------------------------VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 +G +A S+A ++ + A I+ ++A Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQAM-IDELLAAGVAPQT 675 Query: 597 SLIRVP-----------------LVGDIIAQAI-------VEFYQN-------------- 618 + +P + + AQA+ +E QN Sbjct: 676 QAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSE 735 Query: 619 PRNICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 P+N +E L + PS + ++ + K V TGTL ++R +AQ + Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840 >gi|110669547|ref|YP_659358.1| NAD-dependent DNA ligase LigA [Haloquadratum walsbyi DSM 16790] gi|109627294|emb|CAJ53784.1| DNA ligase (NAD) [Haloquadratum walsbyi DSM 16790] Length = 770 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 242/721 (33%), Positives = 383/721 (53%), Gaps = 56/721 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PIE LS E A ++ + L + I HD YY + PII D YD L R A D+ Sbjct: 99 PIEQLSEEAAVEQATQLREAIREHDYQYYIRASPIIADRAYDILFDRL----QALEDIFN 154 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P ++GGE L V H LS+++ ++ +R F R+ + Sbjct: 155 LDTEASPTRRVGGEPLDELETVEHVTSMLSIDQSTAVDSVRDFDERVRDVV-----GDLE 209 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + EPK DG + + YE G+++ AA RGDG+ G+DV+A + + +P L + P + V Sbjct: 210 YICEPKFDGLSVEVIYEDGEYIRAATRGDGNRGDDVTAQVETVGAVPLKLHGDYPSYLAV 269 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 RGEVY+ K F N E I KP+ANPRNAA+G LR+L+P + R L+ F + + Sbjct: 270 RGEVYMPKAGFREYNRERIECDEKPFANPRNAAAGTLRQLDPGVVAERPLSCFFYDILDA 329 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 +E+ Q+ L ++ G N+ + + ++ ++Y +++K+ R+ L Y+IDG V KV Sbjct: 330 TEL-PPDQWTTLNDLQSWGLRTNDRISRVDSIDDAIAYRDQLKAARAELNYEIDGTVIKV 388 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ ++ LG +RS RW ++KF + T + DI +Q+GRTG LTPVA L+PV++GG Sbjct: 389 NDRGNREILGATSRSVRWAFAYKFPPRAEITHITDIVVQVGRTGRLTPVALLDPVDVGGV 448 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ A+LHN + IK L + GD V V+RAG+VIP+V ++ Sbjct: 449 TVSRASLHNPEEIKRL-----------SVNSGDEVRVRRAGDVIPEVAEVTQKRA---TG 494 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F+FP+ CPIC S V +D G L CTGGL C AQ + + H+ SR A +I+GL Sbjct: 495 TFNFPNQCPICHSSVEQD-----GPLAF---CTGGLTCDAQLVRTIVHYGSRSALDIDGL 546 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G+Q+++ +S I AD++TL S + + G+G S NL +I++ + Sbjct: 547 GEQRVEQLVES----GVIGELADLYTL------SVADLSKLDGWGTTSAENLIQAISETQ 596 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 SL F+ LGI VG IAR+LA ++ NF I+ D +L + +G Sbjct: 597 TPSLTDFLVGLGIPEVGPTIARNLAG---TFDNFDAIIDA-------DEAALREIEDIGP 646 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++ I EF+ N +N A++ LL V+P + ++ + + VFTG+L + R Sbjct: 647 TVSTHISEFFTNEQNRAAIDNLLSAGVTPQTQQSTATTNAPLSDLTFVFTGSL-SVPRTT 705 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 A Y+ + G + +S TD +++GDNPGS K A++ V ++E +F LL +++ T Sbjct: 706 ATTYIERHGGNATGSVSSNTDYLVIGDNPGSTKRIDAERNDVPEIDETEFTELLAEHDDT 765 Query: 725 L 725 L Sbjct: 766 L 766 >gi|325127826|gb|EGC50734.1| DNA ligase, NAD-dependent [Neisseria meningitidis N1568] Length = 841 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 264/825 (32%), Positives = 404/825 (48%), Gaps = 169/825 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE ++ H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEIRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 + AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV + K DF ALN Sbjct: 161 IQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQDGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y M+ R LPY+IDG+V KV+ + Q +LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D + Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 397 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 398 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++T+ T Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556 Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562 + + SV N+ I + L RF+F+LGIRHV Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPVKWAENILAGIEASKTPELARFLFALGIRHVGERTAK 616 Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 G +ARS+A ++ + A I+ ++A Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQT 675 Query: 597 SLIRVP-----------------LVGDIIAQAIVEF-----------------YQNPRNI 622 + +P + + AQA+ E +Q R+ Sbjct: 676 QAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKNIEGLQTDKALPTDWQAWRSE 735 Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ALL+ + PS + ++ + K V TGTL ++R +AQ + Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840 >gi|254234624|ref|ZP_04927947.1| DNA ligase [Pseudomonas aeruginosa C3719] gi|126166555|gb|EAZ52066.1| DNA ligase [Pseudomonas aeruginosa C3719] Length = 794 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 219/623 (35%), Positives = 335/623 (53%), Gaps = 50/623 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A + ++ L E+ H+ YY +P I D+EYD L R A+ +P L P+ P Sbjct: 5 QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR--------FWQKKDDNSI 126 ++ G + +V H IP LSL + +DL F R+ + Sbjct: 62 TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 ++ EPK+DG +++ YE+G+ V A RGDG +GED+++ +R I +P ++ PEI+ Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEV++SK F ALN + + G K +ANPRNAA+G LR+L+ +R L F +G G Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S Q +L+ R G P++ +R YY+++ R L Y+IDG+V+ Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG RAR PRW I+HKF ++ T LL ++ Q+GRTG +TPVARL+PV + Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D + L +R+GD V+++RAG+VIP+V+ +++ R D Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSR 478 AQ P CP+C S V R K K A +RC G L+C AQ + + HFVSR Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG + ++ D + PAD++TL Q + + GF ++S NL Sbjct: 471 RAMDIDGLGDKIVEQLV---DRGL-VASPADLYTLTYEQ------VFELEGFAELSTNNL 520 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I R SL RFIF+LGI VG E A+ LA+ S + + + ++ + Sbjct: 521 LAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572 Query: 599 IRVPLVGDIIAQAIVEFYQNPRN 621 +P VG +A I F+ + N Sbjct: 573 --LPDVGAEVAYEIHNFFADEHN 593 Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%) Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL FI L I + A A LA + S ++ II DWL L +V + + Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGS-------LDGII---RADWLDLRQVERLPERA 673 Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660 A+++ +F+ P N+ A+EA L+E G H ++ +E L V TGTL+ Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLRE----FGMHWQSERKAVEGLPLAGQTWVLTGTLEA 729 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R A++ + LGA V+ +S KT ++ G GSKL KA +LGVK+++E+ L L + Sbjct: 730 MSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDE 789 Query: 721 YNTT 724 + Sbjct: 790 HGVA 793 >gi|240122918|ref|ZP_04735874.1| putative DNA ligase [Neisseria gonorrhoeae PID332] Length = 823 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 275/844 (32%), Positives = 412/844 (48%), Gaps = 176/844 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P I D+EYD L R +A+ P+L + P+ P ++G Sbjct: 10 ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F Q+ D + + +EPK Sbjct: 64 GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV Sbjct: 124 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K DF LN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F Sbjct: 184 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 242 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ + L + LGF + NG F I +++Y M+ R LPY+IDG V KV Sbjct: 243 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 300 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 301 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 360 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 361 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 409 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 410 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPTRCPICRSEIERE----EGEAVA 465 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 466 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 519 Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549 TLQ+ ++T+ EN G GD+S N+ I + Sbjct: 520 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 579 Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577 L RF+F+LGIRHVG +ARS+A ++ Sbjct: 580 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 639 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615 + A I+ ++A + +P + + AQA+ E Sbjct: 640 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 698 Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654 +Q R+ ALL+ + PS + ++ + K V Sbjct: 699 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 758 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + Sbjct: 759 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 818 Query: 715 LFLL 718 L LL Sbjct: 819 LTLL 822 >gi|268681538|ref|ZP_06148400.1| DNA ligase [Neisseria gonorrhoeae PID332] gi|268621822|gb|EEZ54222.1| DNA ligase [Neisseria gonorrhoeae PID332] Length = 829 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 275/844 (32%), Positives = 412/844 (48%), Gaps = 176/844 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P I D+EYD L R +A+ P+L + P+ P ++G Sbjct: 16 ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 69 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F Q+ D + + +EPK Sbjct: 70 GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 129 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV Sbjct: 130 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 189 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K DF LN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F Sbjct: 190 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 248 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ + L + LGF + NG F I +++Y M+ R LPY+IDG V KV Sbjct: 249 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 306 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 307 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 366 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 367 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 415 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 416 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPTRCPICRSEIERE----EGEAVA 471 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 472 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 525 Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549 TLQ+ ++T+ EN G GD+S N+ I + Sbjct: 526 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 585 Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577 L RF+F+LGIRHVG +ARS+A ++ Sbjct: 586 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 645 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615 + A I+ ++A + +P + + AQA+ E Sbjct: 646 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 704 Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654 +Q R+ ALL+ + PS + ++ + K V Sbjct: 705 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 764 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + Sbjct: 765 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 824 Query: 715 LFLL 718 L LL Sbjct: 825 LTLL 828 >gi|268596277|ref|ZP_06130444.1| DNA ligase [Neisseria gonorrhoeae FA19] gi|268603059|ref|ZP_06137226.1| DNA ligase [Neisseria gonorrhoeae PID1] gi|291044437|ref|ZP_06570146.1| DNA ligase [Neisseria gonorrhoeae DGI2] gi|268550065|gb|EEZ45084.1| DNA ligase [Neisseria gonorrhoeae FA19] gi|268587190|gb|EEZ51866.1| DNA ligase [Neisseria gonorrhoeae PID1] gi|291011331|gb|EFE03327.1| DNA ligase [Neisseria gonorrhoeae DGI2] Length = 829 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 275/844 (32%), Positives = 412/844 (48%), Gaps = 176/844 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P I D+EYD L R +A+ P+L + P+ P ++G Sbjct: 16 ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 69 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F Q+ D + + +EPK Sbjct: 70 GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 129 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV Sbjct: 130 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 189 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K DF LN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F Sbjct: 190 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 248 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ + L + LGF + NG F I +++Y M+ R LPY+IDG V KV Sbjct: 249 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 306 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 307 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 366 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 367 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 415 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 416 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 471 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 472 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 525 Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549 TLQ+ ++T+ EN G GD+S N+ I + Sbjct: 526 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 585 Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577 L RF+F+LGIRHVG +ARS+A ++ Sbjct: 586 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 645 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615 + A I+ ++A + +P + + AQA+ E Sbjct: 646 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 704 Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654 +Q R+ ALL+ + PS + ++ + K V Sbjct: 705 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 764 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + Sbjct: 765 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 824 Query: 715 LFLL 718 L LL Sbjct: 825 LTLL 828 >gi|78188256|ref|YP_378594.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3] gi|123743484|sp|Q3ATX4|DNLJ_CHLCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78170455|gb|ABB27551.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3] Length = 667 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/712 (32%), Positives = 378/712 (53%), Gaps = 50/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I A + ++ L QEI H+ Y+ +KP + D E+D L A+ FPDL P Sbjct: 1 MTIIDASERIAQLRQEIERHNYLYFNEAKPELSDYEFDKLLEELMALEREFPDLL---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + VTH P LSL ++ ++ +F R+ + ++ + E Sbjct: 58 DSPSQRVGGTITKEFPVVTHREPMLSLANTYSAGEVAEFYNRVAKLLAAENVHKQEMVAE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I++ Y G V A RGDG G+D++ IR I +IP L + +EVRGE+ Sbjct: 118 LKFDGVAISLLYRDGVLVRGATRGDGVQGDDITPNIRTIASIPLRLHQPLAGEVEVRGEI 177 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL-GKTSEI 249 ++ K DF LND R +ANPRNA +G L+ + ++ R +NF + L G E Sbjct: 178 FMRKEDFEQLNDNRPEEER--FANPRNATAGTLKLQDSAEVARRRMNFVAYYLKGLKDET 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 L K+ LGF R+ T I ++ NE + R LPY+ DG+V K++ Sbjct: 236 L--DHVSRLHKLEALGFTTGGHYRRCKTIEEINTFINEWEEKRWKLPYETDGVVLKLNNV 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 L +QLG A+SPRW I++K+ +QA T+L ++ Q+GR G +TPVA L PV + G+ ++ Sbjct: 294 QLWEQLGATAKSPRWAIAYKYPAQQARTQLCNVVFQVGRIGTITPVAELTPVLLAGSTVS 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 +TLHN D I+ L + + D V+++++GEVIPKVV + +ER DA + Sbjct: 354 RSTLHNFDEIERL-----------SVMILDYVMIEKSGEVIPKVVRTLPDERPADAHAIA 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + +++ N + C C AQ RL HF SR+A +I+GLG Sbjct: 403 IPTHCPECDTPLIKPENE------VSWYCPNEEHCPAQIRGRLLHFASRNAMDIKGLG-- 454 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 D + + D++ LQ Q +E + G S NL ++++ R S Sbjct: 455 --DALVEQLVAWGLVHDVGDLYLLQEPQ------LERMERMGKKSAQNLIRALDESRTRS 506 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +R +++LGIRHVG AR LA + + Q N++ L+ VP +G +A Sbjct: 507 YDRLLYALGIRHVGRATARELAHAFPTLDALMQ--------ANEERLA--EVPDIGTTVA 556 Query: 610 QAIVEFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 Q+IV+F+ P + V+ L + +++ S + E+ V+ E L+FTGTL++ R +A Sbjct: 557 QSIVDFFAKPSSRQLVDKLREARLQLAASASKIEQ-VNRNFEGMSLLFTGTLERYTRQQA 615 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E V + G V +S+KT +++ G + GSKL+KA +LGV++++E++F+ ++ Sbjct: 616 AELVVERGGRVVESISKKTSLLVAGRDGGSKLDKAHKLGVRVISEDEFMGMM 667 >gi|120602092|ref|YP_966492.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4] gi|166215378|sp|A1VC99|DNLJ1_DESVV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|120562321|gb|ABM28065.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4] Length = 680 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 246/719 (34%), Positives = 384/719 (53%), Gaps = 57/719 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I Q + + L E++ H+ YY+ P I D+EYD L R + +P L D Sbjct: 3 NIPQHQSRAAWLRAELARHNRLYYELDTPEISDAEYDTLYRELVNLETLWPALM---DEA 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GGE+ L K H++ SL+ ++ ++ FI R+Y + + F +P Sbjct: 60 SPTQRVGGEVLDRLEKQAHTMRMYSLDNAFSRDEWGAFIQRMYNTLPETPSS---FWCDP 116 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG + + YE G F A RG+G GE V+A +R + +P R+ N+P +EVRGEV Sbjct: 117 KMDGLALEVIYENGVFTSALTRGNGAEGEVVTAAMRTVRNLPLRLRGNNVPHRLEVRGEV 176 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 I+K DF LN AVG K +ANPRNAA+G +R+L+ T IT R L F +G+G+ Sbjct: 177 VIAKADFEQLNARQSAVGGKVFANPRNAAAGSVRQLD-TSITAGRPLQFLAYGVGQVVLD 235 Query: 250 FAKGQY----EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + +++ ++R GF R + + +YY + + R +L +IDG+V K Sbjct: 236 GGTAPWTTHSDLMARLREWGFDSPPEGRLCTSPDEVWAYYEMLGARRESLAIEIDGVVAK 295 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ Q+ LG AR+PRW ++ KF Q TRL DI +Q+GRTG+LTPVA LEPV +GG Sbjct: 296 VDDTEAQEALGFTARAPRWALALKFPAMQVRTRLQDIRVQVGRTGVLTPVAILEPVRVGG 355 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ ATLHN I+ + + +GD VLV+RAG+VIP+VV +V +R Sbjct: 356 VEVSRATLHNAYEIE-----------DKGLMLGDMVLVQRAGDVIPEVVRPLVEDRTGGE 404 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +PF FP+ CP C S VV N + AHRC ++C A + + + HFVS+ ++ G Sbjct: 405 RPFVFPTTCPECGS-VVHKPNDEV-----AHRCI-NVSCPAVRRQSIIHFVSKAGLDVRG 457 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN-K 544 G+ + A + AD+F+L +T + G S N S++ Sbjct: 458 FGEHIVQQLVD----AGRVTTAADLFSL------TTVDLMGFERMGPTSAANAIASLDAA 507 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R +L R I +LGIRHVG + AR+LA +++ ++ A D L+ +P + Sbjct: 508 RTGATLARLICALGIRHVGEQTARTLATHFV----------DLDAMRKADGEKLLHLPDI 557 Query: 605 GDIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 G +A +I F+ N NI +E L L P S+++ KL+FTG+LQ+ Sbjct: 558 GPEVAASIRCFFDNQSNIELLEQLRDKGLWPRKPDANGPFVREGSQLQGLKLLFTGSLQR 617 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A+ GA V + +S+ D+I+ G + GSKL++A+ LG+ +++E+ F LL+ Sbjct: 618 MSRSEAKRMAEAAGAHVVSNVSKSLDMIVAGADAGSKLDQAKSLGLHVIDEDAFANLLK 676 >gi|288572809|ref|ZP_06391166.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568550|gb|EFC90107.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM 11002] Length = 674 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/704 (33%), Positives = 371/704 (52%), Gaps = 55/704 (7%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 SL++EI+ HD YY P I DS YD + R + P L + P+ ++GG Sbjct: 12 SLKKEIARHDRLYYVLDSPEIDDSSYDRMMRELLELEREHPTLVSDDSPS---RRVGGRP 68 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 KV HS P LSL+ ++++ +LR F++R +S + E KIDG +++ Sbjct: 69 LDGFLKVVHSHPMLSLDDVFDVSELRSFLSR-----ATGPVSSFPWVCELKIDGLAVSLI 123 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 YE G FV A RGDG GEDV++ + + ++P L++++P +EVRGEVY++KN F LN Sbjct: 124 YEDGVFVGGATRGDGSVGEDVTSNLLTVRSLPLRLNIDVPGRLEVRGEVYMAKNSFARLN 183 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 + G +ANPRNAA+G LR+L+P R L+ FV+ + E Q ++L + Sbjct: 184 ERREEKGDPLFANPRNAAAGSLRQLDPRVAAERRLDLFVYAVVSPEERGINSQSDLLSWL 243 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 + G PV + + + + + R +L Y DG+V K D +LG AR+ Sbjct: 244 KKAGLPVQDAWELCSDLDEVEEFVARWQEERFSLSYVTDGVVVKADPVEQWGRLGRTARA 303 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW +++K+ ++ +T L +I+I +GRTG +TPVA LEPV + G+++ A+LHNED I+ Sbjct: 304 PRWAVAYKYPPEEKTTVLKEIEISVGRTGAMTPVAILEPVQLAGSVVRRASLHNEDEIR- 362 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +D+R+GDRV V++AGE+IP++V + R+ PF P CPIC S Sbjct: 363 ----------RKDVRIGDRVKVRKAGEIIPEIVSVDSEARNGTEIPFEMPRNCPICGSEA 412 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 VR + +A RC +C AQ E L+HF SR +I GLG++ S Sbjct: 413 VRLPDE------SAWRCPNK-SCPAQMNEELRHFASRGCMDIRGLGERVASQLVGS---G 462 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 F +R AD++ L+ Q S ++ G S +NL +I ++ L + LGIRH Sbjct: 463 F-VRDLADLYELKEEQIISLDRM------GPKSASNLISAIRGSKDRPLAALLAGLGIRH 515 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG +A L + Y S + A D L + VG IA ++ F+ + N Sbjct: 516 VGKGVAELLVERYGSME----------ALRRADPEELGSIEGVGPAIAASLEAFFSDDGN 565 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQLGAV 676 I ++ L+ + E+ + + K L VFTG L++ R +AQ+ V +G Sbjct: 566 IRTLDRLMDH---GVRMEERRPETSSDGKLLSGMTFVFTGELKRASRSEAQKLVKSMGGK 622 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ +S KT ++ G++PGSKL+KA LG+ +++E+ F +++ Sbjct: 623 ATSSVSGKTSYVVAGESPGSKLDKAVSLGIPVLDEDGFYEMVES 666 >gi|240080125|ref|ZP_04724668.1| putative DNA ligase [Neisseria gonorrhoeae FA19] gi|240117363|ref|ZP_04731425.1| putative DNA ligase [Neisseria gonorrhoeae PID1] gi|260441105|ref|ZP_05794921.1| putative DNA ligase [Neisseria gonorrhoeae DGI2] Length = 823 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 275/844 (32%), Positives = 412/844 (48%), Gaps = 176/844 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P I D+EYD L R +A+ P+L + P+ P ++G Sbjct: 10 ELTDLLNRYAYE---YYTLDAPSIPDAEYDRLFRELEALERNHPEL---KLPDSPTQRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F Q+ D + + +EPK Sbjct: 64 GEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV Sbjct: 124 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K DF LN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F Sbjct: 184 MLKADFAGLNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 242 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ + L + LGF + NG F I +++Y M+ R LPY+IDG V KV Sbjct: 243 EAEEHIQELAYFQELGFSLPNG--NFGCFKNIGEVLAFYEHMQQKRPELPYEIDGTVVKV 300 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 301 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 360 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 361 TVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQET 409 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 410 AVAVSDGIGHQQDDLFAETPSAKQTESVPLHKPYRLPARCPICRSEIERE----EGEAVA 465 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 466 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRID 519 Query: 512 --TLQRRQQTSTT-KIENILG-----FGDVS--------------VTNLYDSINKRRNIS 549 TLQ+ ++T+ EN G GD+S N+ I + Sbjct: 520 IPTLQKMKETADKGSSENENGDAETVSGDLSKYNTQNGKKQPTKWAQNILAGIESGKTPE 579 Query: 550 LERFIFSLGIRHVGAE--------------------------------IARSLAKYYLSY 577 L RF+F+LGIRHVG +ARS+A ++ Sbjct: 580 LARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQA 639 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF----- 615 + A I+ ++A + +P + + AQA+ E Sbjct: 640 EQQAM-IDELLAAGVAPQAQAVSLPAAQYAGPQRWITRLPGFKISENKAQALWELAGQSI 698 Query: 616 ------------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVF 654 +Q R+ ALL+ + PS + ++ + K V Sbjct: 699 EGLQNDKALPADWQAWRSKAQNTALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVL 758 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL +R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + Sbjct: 759 TGTLPTFKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAEL 818 Query: 715 LFLL 718 L LL Sbjct: 819 LTLL 822 >gi|330960233|gb|EGH60493.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 787 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 221/623 (35%), Positives = 339/623 (54%), Gaps = 50/623 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137 + +V H +P LSL + DLR+F R+ + ++ ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGAGSTVEYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ PE++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPEVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + VG K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L ++ G PV+ ++ AN ++YY ++ R +L Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLNALKKWGMPVSRELKLANGVEECLAYYKDIGERRLSLSYEIDGVVFKVNSLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L + +GD V+++RAG+VIP+VV ++ R A+P P C Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPQTAKPVEVPQTC 415 Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S+V R + GK A +RC G LAC AQ + + H+VSR A +IEGLG Sbjct: 416 PVCGSQVERTQLVKRSKGKETISEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + I PAD++ L+ Q I ++ GF ++S L +I + Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSKQP 525 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGI VG E A+ LA+ S Q + ++ + +P +G + Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDIGLEV 575 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 576 AHEIHSFFEDEHNRNVIDALLGE 598 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A Q A++ + A + DWL + + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAA----------QKLAEKFGTLEAVISADWLDMRQA--LPE 663 Query: 607 IIAQAIVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ N +EA LK+ G H ++ +E L V TGTL Sbjct: 664 KQAKSVRDFFDANANAERARAIEAQLKD----FGMHWRSEKKAVEGLPLAGQTWVLTGTL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++EE L L Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEEALLKRL 779 Query: 719 QQYNTTL 725 + + Sbjct: 780 TELGVAV 786 >gi|229823252|ref|ZP_04449321.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271] gi|229787418|gb|EEP23532.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271] Length = 671 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 242/714 (33%), Positives = 383/714 (53%), Gaps = 68/714 (9%) Query: 16 QAR-KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 QAR +E+ L + +YH YY + ++ D+ YDAL R + I A P+ P+ P Sbjct: 9 QARLEEVKHLLNDYAYH---YYVLDQSLVSDASYDALYRELEEIEAAHPEWI---TPDSP 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ KV H+ SL ++ E++ +FI R+ ++ + + F E KI Sbjct: 63 TQRVGDQLLEGFSKVAHAESMYSLGNAFSPEEVTQFIERV----TQQVEGPVSFMCECKI 118 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + Y+ G FV A RGDG GED++ +R I ++P L N+ +EVRGE Y+ Sbjct: 119 DGLAIALTYQDGVFVRGATRGDGTIGEDITQNLRTIRSLPLRLRQNLS--VEVRGECYMP 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 K FLALN+E A G++ + NPRNAA+G LR+L+P + R LN F++ T E + Sbjct: 177 KAVFLALNEEREAQGQEIFKNPRNAAAGGLRQLDPRAVADRQLNIFLYSAVYTDEFHPES 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + LG N R+ T ++ Y + R LPY+IDG+V KV+ Q+ Sbjct: 237 QAGLFAAFEQLGLRTNPLRRECQTAEEVIDYIQMIGQQRHDLPYEIDGVVIKVNHIDQQQ 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG ++PRW I++KF ++A T L +++ +GRTG++TP A ++PV + G + A+L Sbjct: 297 ALGFTVKAPRWAIAYKFPAEEAVTTLREVEWTVGRTGVVTPTAIMDPVPLAGTTVQRASL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L D+R+GD+V + +AG++IP++ +++ +R D+QP + P+ Sbjct: 357 HNVDLIESL-----------DVRIGDQVTIHKAGDIIPEITSVLLAKRPQDSQPLAIPTH 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP CQ+ +VR G+ VA RC L C AQ+L L HFVSR A NI+GLG + L+ Sbjct: 406 CPECQTALVRQ-----GEEVAL-RCP-NLVCPAQRLALLSHFVSRGAMNIQGLGPRILNQ 458 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 S+ ++ D++ L S KI+ + S L +I ++ S ER Sbjct: 459 LVASQ----AVTELDDLYRLSLEDLLSLDKIQ------EKSAQKLLAAIEASKSNSAERL 508 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIRHVGA+ AR + + + +Q I + VG II+Q++V Sbjct: 509 LFGLGIRHVGAKAARLVLQVFGDLNRLSQATAEEIGA----------IEGVGPIISQSLV 558 Query: 614 EFYQNPRNICAVEALLKEVSPS------IGRHEKNVS-SEIEN-----KKLVFTGTLQKI 661 ++ + + +A+LK ++ + G V+ E N K +V TGT++ Sbjct: 559 QYL----TLESSQAMLKRLAEAGVNLTYQGPQPLEVAQGETANDFWLGKTVVLTGTMESY 614 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + GA V+ +S+KTD ++ G GSKL KA+ LGV I++E FL Sbjct: 615 SRSEAKELLEARGAKVTGSVSKKTDYLVAGQEAGSKLSKAESLGVTILDEASFL 668 >gi|325143946|gb|EGC66256.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240013] gi|325206489|gb|ADZ01942.1| DNA ligase, NAD-dependent [Neisseria meningitidis M04-240196] Length = 841 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 267/825 (32%), Positives = 406/825 (49%), Gaps = 169/825 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+ + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALELNHPEF---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV + K DF ALN Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVANIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y +M+ R LPY+IDG+V KV+ + Q++LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D Sbjct: 338 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 393 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 394 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTSTTKI 524 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++T+ + Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETTDKTV 556 Query: 525 ----------ENILGFGDVS------VTNLYDSINKRRNISLERFIFSLGIRH------- 561 ++ G N+ I + L RF+F+LGIRH Sbjct: 557 AESDQTPSEGSSVGASGKHKKQPVKWAENILGGIESGKTPELARFLFALGIRHVGERTAK 616 Query: 562 -------------------------VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 +G +A S+A ++ + A I+ ++A Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQAM-IDELLAAGVAPQT 675 Query: 597 SLIRVP-----------------LVGDIIAQAI-------VEFYQN-------------- 618 + +P + + AQA+ +E QN Sbjct: 676 QAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSE 735 Query: 619 PRNICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 P+N +E L + PS + ++ + K V TGTL ++R +AQ + Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S+KTD ++ G+ GSKLEKA LGV I++E + L LL Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSILSEAELLTLL 840 >gi|296451892|ref|ZP_06893609.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08] gi|296879713|ref|ZP_06903688.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07] gi|296259274|gb|EFH06152.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08] gi|296429302|gb|EFH15174.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07] Length = 677 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 229/706 (32%), Positives = 389/706 (55%), Gaps = 52/706 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + E++ L + I+YH++ YY P I D EYD L + ++ P+L R + P N+ Sbjct: 7 KDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKR---IDSPTNR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG+ ++ H P LSL ++ +DLR F R+ + + ++ + +E KIDG Sbjct: 64 VGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKIDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + Y G+F A RGDG GED+S + + +IP L +N + + VRGEVYISK++ Sbjct: 120 SVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKDN 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + +ANPRN A+G LR+L+P R L+ FV + + + + Sbjct: 178 FRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEDYDLESHSD 237 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ + LGF V+ + + ++ + R L Y+IDG+V KV+ + ++G Sbjct: 238 SLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLEYEIDGMVIKVNNIKQRDEMG 297 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++ T+++DI +++GRTG +TP A LEPV + G ++ ATLHNE Sbjct: 298 YTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHNE 357 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DI++ D VLV++AG++IP+V+++I ER D F P CP+ Sbjct: 358 DYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCPV 406 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C +R G+ AA +C ++C AQ + HFVSRDA NI+GLG+ + Sbjct: 407 CSEPTIR----LEGE--AAVKCI-NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLLN 459 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +I D+ L ++ ++E + G+ S NL +SI K + L R I Sbjct: 460 E-------KIIQDVSDLYYIKKEDVVELERM---GEKSADNLINSIEKSKENDLWRLING 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI+ +G + A+ LA NF ++++++++ ++ L + G I+A ++VEF+ Sbjct: 510 LGIKFIGVKAAKILA------YNF-KDLDDVMSATSE---QLEELEEFGSIMANSVVEFF 559 Query: 617 QNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + +N+ + LK V + S+ + V E K+V TGTL ++R+ A++ + + Sbjct: 560 KEDKNMNVINK-LKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEKR 618 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL LL+ Sbjct: 619 GGKATSSVSKSTTFVLAGEEAGSKLAKANDLGIKVIDEERFLELLK 664 >gi|166215834|sp|Q18E49|DNLJ_HALWD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 736 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 242/721 (33%), Positives = 383/721 (53%), Gaps = 56/721 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PIE LS E A ++ + L + I HD YY + PII D YD L R A D+ Sbjct: 65 PIEQLSEEAAVEQATQLREAIREHDYQYYIRASPIIADRAYDILFDRL----QALEDIFN 120 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P ++GGE L V H LS+++ ++ +R F R+ + Sbjct: 121 LDTEASPTRRVGGEPLDELETVEHVTSMLSIDQSTAVDSVRDFDERVRDVV-----GDLE 175 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + EPK DG + + YE G+++ AA RGDG+ G+DV+A + + +P L + P + V Sbjct: 176 YICEPKFDGLSVEVIYEDGEYIRAATRGDGNRGDDVTAQVETVGAVPLKLHGDYPSYLAV 235 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 RGEVY+ K F N E I KP+ANPRNAA+G LR+L+P + R L+ F + + Sbjct: 236 RGEVYMPKAGFREYNRERIECDEKPFANPRNAAAGTLRQLDPGVVAERPLSCFFYDILDA 295 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 +E+ Q+ L ++ G N+ + + ++ ++Y +++K+ R+ L Y+IDG V KV Sbjct: 296 TEL-PPDQWTTLNDLQSWGLRTNDRISRVDSIDDAIAYRDQLKAARAELNYEIDGTVIKV 354 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ ++ LG +RS RW ++KF + T + DI +Q+GRTG LTPVA L+PV++GG Sbjct: 355 NDRGNREILGATSRSVRWAFAYKFPPRAEITHITDIVVQVGRTGRLTPVALLDPVDVGGV 414 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ A+LHN + IK L + GD V V+RAG+VIP+V ++ Sbjct: 415 TVSRASLHNPEEIKRL-----------SVNSGDEVRVRRAGDVIPEVAEVTQKRA---TG 460 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F+FP+ CPIC S V +D G L CTGGL C AQ + + H+ SR A +I+GL Sbjct: 461 TFNFPNQCPICHSSVEQD-----GPLAF---CTGGLTCDAQLVRTIVHYGSRSALDIDGL 512 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G+Q+++ +S I AD++TL S + + G+G S NL +I++ + Sbjct: 513 GEQRVEQLVES----GVIGELADLYTL------SVADLSKLDGWGTTSAENLIQAISETQ 562 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 SL F+ LGI VG IAR+LA ++ NF I+ D +L + +G Sbjct: 563 TPSLTDFLVGLGIPEVGPTIARNLAG---TFDNFDAIIDA-------DEAALREIEDIGP 612 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++ I EF+ N +N A++ LL V+P + ++ + + VFTG+L + R Sbjct: 613 TVSTHISEFFTNEQNRAAIDNLLSAGVTPQTQQSTATTNAPLSDLTFVFTGSL-SVPRTT 671 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 A Y+ + G + +S TD +++GDNPGS K A++ V ++E +F LL +++ T Sbjct: 672 ATTYIERHGGNATGSVSSNTDYLVIGDNPGSTKRIDAERNDVPEIDETEFTELLAEHDDT 731 Query: 725 L 725 L Sbjct: 732 L 732 >gi|307297347|ref|ZP_07577153.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2] gi|306916607|gb|EFN46989.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2] Length = 665 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 237/704 (33%), Positives = 386/704 (54%), Gaps = 47/704 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+ARK + L +EI YH YY P I DSEYD L R + +P+L + P Sbjct: 2 ITFEEARKRIDELRKEIDYHAYRYYVLDDPEIPDSEYDNLLRTLIDLEEQYPEL---KTP 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + S +V H SL+ ++ E++ +F R+ Q + + + E Sbjct: 59 DSPSIRVGLKPVASFKEVVHEYRLFSLDNTYSEEEVLQFDRRVREELQIE---IVRYMCE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I+++Y+ G V A RG+G GEDV+ IRAI +IP L ++ +EVRGEV Sbjct: 116 LKIDGLSISVKYDNGLLVRGATRGNGFVGEDVTENIRAIKSIPLRLRQDLS--VEVRGEV 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 Y+ K+ F +N + +ANPRNAA+G LR+L+P ++ R LN F + + + S++ Sbjct: 174 YLPKDVFYEINRARSKGELQVFANPRNAAAGTLRQLDPREVAKRRLNAFFYHVVEPSKLQ 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q E LQ ++ +G V A G+++++ + +S+L Y +DG V KVD+ Sbjct: 234 LKSQNEQLQFLKSIGMRVEPNSELAEGTDGVIAFWKKWSESKSSLNYAVDGTVVKVDDLY 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG ++PRW I+ KF +QA T+L+ + +GRTG +TPVA LEPV + G + Sbjct: 294 AQEELGYTTKAPRWAIAFKFPAEQAMTKLIKVTFGVGRTGTITPVAELEPVQLAGTTVKR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A++HN D+I +DIR+ D V+V++AGE+IP++V I +R + + Sbjct: 354 ASMHNFDFI-----------SEKDIRLFDIVIVQKAGEIIPQIVRSIPEKRTGKEKRITP 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C V R+ A +C C A+ R++ F SRDA +IEGLG++ Sbjct: 403 PSRCPVCGGEVGREKEEDV-----ALKCLNP-TCPAKLSRRIQFFCSRDAMDIEGLGEKL 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + A ++ P+D++ L + S + G G+ + +NL ++I K R+ L Sbjct: 457 VERIVE----AGLVKNPSDLYKLNKDDLLSLGE-----GIGEKTASNLIEAIQKSRSNPL 507 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + I LGI VG++ ++ LA Y+ S + + D L V +G+ +A+ Sbjct: 508 FKLITGLGIPGVGSKTSKDLANYFGSLRGLV----------SADEKELRNVSGIGEQLAK 557 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I ++ +P VE LLK V +I + S ++ K V TGTL R + QE + Sbjct: 558 DIKRYFSSPEVKKEVEELLKYV--NIKDEDSPGSKPLKGMKFVVTGTLPGYSRKEIQEKI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +LG V++ +S+ TD +++G+NPGSK +KA+ LG+KI++E F Sbjct: 616 IKLGGEVASSVSKNTDFLLLGENPGSKEQKARDLGIKIIDERDF 659 >gi|255657267|ref|ZP_05402676.1| DNA ligase [Clostridium difficile QCD-23m63] Length = 674 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 229/706 (32%), Positives = 389/706 (55%), Gaps = 52/706 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + E++ L + I+YH++ YY P I D EYD L + ++ P+L R + P N+ Sbjct: 4 KDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKR---IDSPTNR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG+ ++ H P LSL ++ +DLR F R+ + + ++ + +E KIDG Sbjct: 61 VGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGE----NVEYVVEFKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + Y G+F A RGDG GED+S + + +IP L +N + + VRGEVYISK++ Sbjct: 117 SVGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIP--LKINDKKELIVRGEVYISKDN 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ + +ANPRN A+G LR+L+P R L+ FV + + + + Sbjct: 175 FRKVNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEDYDLESHSD 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ + LGF V+ + + ++ + R L Y+IDG+V KV+ + ++G Sbjct: 235 SLEYLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLEYEIDGMVIKVNNIKQRDEMG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF ++ T+++DI +++GRTG +TP A LEPV + G ++ ATLHNE Sbjct: 295 YTAKSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHNE 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI+ +DI++ D VLV++AG++IP+V+++I ER D F P CP+ Sbjct: 355 DYIR-----------EKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCPV 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C +R G+ AA +C ++C AQ + HFVSRDA NI+GLG+ + Sbjct: 404 CSEPTIR----LEGE--AAVKCI-NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLLN 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +I D+ L ++ ++E + G+ S NL +SI K + L R I Sbjct: 457 E-------KIIQDVSDLYYIKKEDVVELERM---GEKSADNLINSIEKSKENDLWRLING 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI+ +G + A+ LA NF ++++++++ ++ L + G I+A ++VEF+ Sbjct: 507 LGIKFIGVKAAKILA------YNF-KDLDDVMSATSE---QLEELEEFGSIMANSVVEFF 556 Query: 617 QNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + +N+ + LK V + S+ + V E K+V TGTL ++R+ A++ + + Sbjct: 557 KEDKNMNVINK-LKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTLPTLKRNDAKDMIEKR 615 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G ++ +S+ T ++ G+ GSKL KA LG+K+++EE+FL LL+ Sbjct: 616 GGKATSSVSKSTTFVLAGEEAGSKLAKANDLGIKVIDEERFLELLK 661 >gi|15618073|ref|NP_224357.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae CWL029] gi|15835684|ref|NP_300208.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae J138] gi|16752895|ref|NP_445166.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae AR39] gi|33241485|ref|NP_876426.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae TW-183] gi|7674003|sp|Q9Z934|DNLJ_CHLPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|4376415|gb|AAD18302.1| DNA Ligase [Chlamydophila pneumoniae CWL029] gi|7189537|gb|AAF38439.1| DNA ligase [Chlamydophila pneumoniae AR39] gi|8978522|dbj|BAA98359.1| DNA ligase [Chlamydophila pneumoniae J138] gi|33235993|gb|AAP98083.1| DNA ligase (NAD+) [Chlamydophila pneumoniae TW-183] Length = 662 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 233/706 (33%), Positives = 393/706 (55%), Gaps = 50/706 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E ++ +L +E+ HD YY +P I D EYD R+ I + P+ P+ Sbjct: 4 ENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLWSPS-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G + + V+H P LS+ ++ E+L +F +R+ +K S +T+E KI Sbjct: 62 -TRLGDRPSGTFSVVSHKEPMLSIANSYSKEELSEFFSRV----EKSLGTSPRYTVELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + IRYE V A RG+G GED+++ IR I ++P L + PE IEVRGEV+ S Sbjct: 117 DGIAVAIRYEDRVLVQALSRGNGKQGEDITSNIRTIRSLPLRLPEDAPEFIEVRGEVFFS 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 + F +N++ + + +ANPRNAA G L+ L+P ++ R L ++ L + Sbjct: 177 YSTFQIINEKQQQLEKTIFANPRNAAGGTLKLLSPQEVAKRKLEISIYNLIAPGD--NDS 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 YE LQ+ GFPV+ R +T ++S +++ R++LP +IDG V KVD + Q+ Sbjct: 235 HYENLQRCLEWGFPVSGKPRLCSTPEEVISVLKTIETERASLPMEIDGAVIKVDSLASQR 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG + RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+L++ A+L Sbjct: 295 VLGATGKHYRWALAYKYAPEEAETLLEDILVQVGRTGVLTPVAKLTPVLLSGSLVSRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 +NED I +DIR+GD V V + GEVIPKVV + +R ++ ++ P F Sbjct: 355 YNEDEIH-----------RKDIRIGDTVCVAKGGEVIPKVVRVCREKRPEGSEVWNMPEF 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S VVR+ + + + V C A +E+++ FV R A NI+ LG + + Sbjct: 404 CPVCHSHVVREEDRVSVRCVNPE-------CVAGAIEKIRFFVGRGALNIDHLGVKVITK 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ + AD+F Q +T + I G + S N+ +SI + +++ L+RF Sbjct: 457 LFE----LGLVHTCADLF------QLTTEDLMQIPGIRERSARNILESIEQAKHVDLDRF 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + +LGI +G +A LA ++ + ++ +I+ ++ LSL +G+ +A AI Sbjct: 507 LVALGIPLIGIGVATVLAGHF-------ETLDRVISATFEELLSL---EGIGEKVAHAIA 556 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 E++ + ++ ++ ++++ I + K+ S+ K V TGTL+ + R A+ + Sbjct: 557 EYFSDSTHLNEIKK-MQDLGVCISPYHKSGSTCF-GKAFVITGTLEGMSRLDAETAIRNC 614 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V + +S++TD +++G+NPGSKLEKA++LGV I+++E F L+ Sbjct: 615 GGKVGSSVSKQTDYVVMGNNPGSKLEKARKLGVSILDQEAFTNLIH 660 >gi|330984116|gb|EGH82219.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. lachrymans str. M301315] Length = 675 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 244/715 (34%), Positives = 377/715 (52%), Gaps = 49/715 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +SI EL L +Y Y+ +P I D+EY+AL + AI A P + P Sbjct: 1 MSINPRAAELRHLIDHANYR---YHVLDEPTITDNEYNALFQELLAIEAADP---TQQTP 54 Query: 72 NGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P KIGG + + L V H++ LSL+ + D +KF+ I + + + + Sbjct: 55 DSPTQKIGGYVAVGGLQPVKHAVRMLSLDNAFEDADFQKFVKAIE---AEMGIDQLEYVC 111 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 EPK DG +++ Y G A RGDG +GEDV+ +R + IP L + P +EVRGE Sbjct: 112 EPKYDGLAVSLIYIDGVLTRGATRGDGETGEDVTHTVRTVKNIPLKLRGDFPAYVEVRGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 VY+ ++ F ALN I G K YANPRNAA+G LR+L+ T +R L F + L I Sbjct: 172 VYMPRDGFEALNQRQIEQGLKTYANPRNAAAGSLRQLDSTVSASRPLEFCAYSLVGAEGI 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 K E +Q ++ G P+ G+ F + + E+ R TL YDIDG+V+K+++ Sbjct: 232 RPKTHIEAMQIIQGWGVPITPGLEVIKGFEAVKLAWEELLKRRPTLNYDIDGIVFKLNDI 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG R PRW I+ KF ++ T L+ +D+QIGRTG TPVAR++PV +GG +++ Sbjct: 292 ELQEELGFVGRVPRWAIAWKFPAEEVDTVLIQVDVQIGRTGAATPVARVKPVQVGGVVVS 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 N TLHN D +K L D+ GD V+++RAG+VIP+++ + ++R P A+P + Sbjct: 352 NVTLHNWDEVKRL-----------DLHEGDTVIIRRAGDVIPQMMMSVADKRIPGAKPIA 400 Query: 430 FPSFCPICQSRVVR--DLNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P+ CP C S ++ DL K G V A RC GG+AC AQ+ E + + VSR+ +I Sbjct: 401 APTHCPRCNSEILNDTDLVKKKGVYVEVTLAYRRCQGGIACDAQREEMIINAVSREVLDI 460 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLGK + K+ ++ +D+F L K+E G + SV L SI Sbjct: 461 DGLGKTTV----KTLCDLGILKDLSDVFAL---TYDDLIKVE---GMAEASVNKLLASIE 510 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + L RF+ SLGIR G + LAK +LS+ + I+ + DD L+ + Sbjct: 511 KSKQTELPRFLRSLGIREAGETTGKVLAKTFLSF-------DQIVNKSFDD---LVALED 560 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 G A +V+ + + + + + +I E+ +S + + V TGTL + R Sbjct: 561 FGPKKAGYLVKAFAPGSPVLEMAQRMLALGVTIAPVEQQDTS-LAGRTYVLTGTLSHMSR 619 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ + GA S + +KT +I G + G KL +A LG+ ++ EE + L+ Sbjct: 620 GEAKARLEAKGAKTSGSVGKKTTALIAGADGGGKLTEAANLGIPVLYEEDLMKLI 674 >gi|85057601|ref|YP_456517.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma AYWB] gi|123725342|sp|Q2NJF5|DNLJ_AYWBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|84789706|gb|ABC65438.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma AYWB] Length = 671 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 240/708 (33%), Positives = 381/708 (53%), Gaps = 66/708 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ SL ++++ + YY S P + D +YDAL + + + +P P P K Sbjct: 8 KQKIKSLVKQLNKANYQYYNLSDPDLSDQQYDALIKELINLENHYPQFKL---PYSPTLK 64 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 IGG + + H P +SL ++NIE+L+ F RI K + E KIDG Sbjct: 65 IGGFVEKKFSTIKHKTPMMSLANVFNIEELKAFYDRIV-----KKIPTFSLLTELKIDGV 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I+++Y+KG V A RG+G GEDV+ + I TIP L LN +EVRGE+Y+S D Sbjct: 120 AISLKYQKGILVRALTRGNGIWGEDVTKNAQTIKTIP--LRLNEDLDLEVRGEIYLSHPD 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F LN + + ++NPRNAASG LR+LN + R L+ FV+G+ + Q E Sbjct: 178 FEKLNAQRKQENKPLFSNPRNAASGTLRQLNSAVVAKRNLSIFVYGIAD-PYLTKPTQKE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LGF N + F ++S + KSI+ L YD DG+V K++E +G Sbjct: 237 TLVFLTALGFATNPHHYFVSNFENLLSVIEKYKSIKEQLTYDTDGIVIKINELVFHSLIG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A++PRW ++KFA + + + +I Q+GRTG++TPV + PV + G+L++ LHN Sbjct: 297 ATAKAPRWATAYKFATITSQSIIQNIIFQVGRTGVITPVCEIMPVMVDGSLVSKVFLHNY 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI +DIR+ D V+V +AG VIP+++++I ++R +P CP Sbjct: 357 DYI-----------CKKDIRIKDHVIVHKAGSVIPEILEVIKSKRTDLQKPTLMIEKCPS 405 Query: 437 CQSRVVRD--------LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 C++ + + LNP C Q++++L HFVS++A +I LG+ Sbjct: 406 CKTILEKQPGGIDYFCLNPN---------------CREQKIQKLIHFVSKNAMDINVLGE 450 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 Q + FF I P+D++ L+ Q ++ I GFG +TN+ D+I + Sbjct: 451 QTIITFFDKN----LITKPSDLYLLKNHQHI----LQEISGFGAKKITNILDAIEASKQK 502 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 E +F+LGI+H+G ++++ LAKY+ + +N Q + D ++ IR +G I Sbjct: 503 GFEDVLFALGIKHIGKKVSQVLAKYFQTIENLQQ--------STSDTITQIRE--IGIKI 552 Query: 609 AQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKA 666 AQ+I +++ N N+ V L K VS +K + I NKK+V TGTLQK R + Sbjct: 553 AQSIQQYFSNSCNLEEVTKLKKLGVSFQSTNSQKPTTQNIFTNKKIVLTGTLQKYSRLQI 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 Q+ + Q+GA+++ LS KT+ +IVG N GSKL KAQ+L + I+ E++ Sbjct: 613 QQILEQMGAIITNSLSLKTNYLIVGINAGSKLTKAQKLQIPIIEEKEL 660 >gi|254239878|ref|ZP_04933200.1| DNA ligase [Pseudomonas aeruginosa 2192] gi|126193256|gb|EAZ57319.1| DNA ligase [Pseudomonas aeruginosa 2192] Length = 794 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 219/623 (35%), Positives = 334/623 (53%), Gaps = 50/623 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A + ++ L E+ H+ YY +P I D+EYD L R A+ +P L P+ P Sbjct: 5 QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLL---TPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR--------FWQKKDDNSI 126 ++ G + +V H IP LSL + +DL F R+ + Sbjct: 62 TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 ++ EPK+DG +++ YE+G+ V A RGDG +GED+++ +R I +P ++ PEI+ Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEIL 181 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEV++SK F ALN + + G K +ANPRNAA+G LR+L+ +R L F +G G Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S Q +L+ R G P++ +R YY+++ R L Y+IDG+V+ Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG RAR PRW I+HKF ++ T LL ++ Q+GRTG +TPVARL+PV + Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + NATLHN D + L +R+GD V+++RAG+VIP+V+ +++ R D Sbjct: 362 GVTVFNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSR 478 AQ P CP+C S V R K K A +RC G L+C AQ + + HFVSR Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG + ++ D + PAD++TL Q + + GF ++S NL Sbjct: 471 RAMDIDGLGDKIVEQLV---DRGL-VASPADLYTLTYEQ------VFELEGFAELSTNNL 520 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I R SL RFIF+LGI VG E A+ LA+ S + + + ++ + Sbjct: 521 LTAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572 Query: 599 IRVPLVGDIIAQAIVEFYQNPRN 621 +P VG +A I F+ + N Sbjct: 573 --LPDVGAEVAYEIHNFFADEHN 593 Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%) Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL FI L I + A A LA + S ++ II DWL L +V + + Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGS-------LDGII---RADWLDLRQVERLPERA 673 Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660 A+++ +F+ P N+ A+EA L+E G H ++ +E L V TGTL+ Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLRE----FGMHWQSERKAVEGLPLAGQTWVLTGTLEA 729 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R A++ + LGA V+ +S KT ++ G GSKL KA +LGVK+++E+ L L + Sbjct: 730 MSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDE 789 Query: 721 YNTT 724 + Sbjct: 790 HGVA 793 >gi|189219712|ref|YP_001940353.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4] gi|254781365|sp|B3DWU2|DNLJ_METI4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189186570|gb|ACD83755.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4] Length = 689 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 239/722 (33%), Positives = 391/722 (54%), Gaps = 51/722 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 + K++ +++L E+ +K L + I +D YY + P++ D EYD L + + Sbjct: 14 VNKKKAPSLDSLGYEEIKKRHDELVKLIRKYDYAYYVEAHPLVSDQEYDNLYHELETLEK 73 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 P+L P+ P +IG E LS F +VTH IP LSLE ++ E+L F+ RI R Sbjct: 74 LHPELI---TPDSPTQRIG-ETPLSGFSQVTHEIPMLSLENTYSKEELFAFLERIKRALP 129 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLS 178 K I FT+EPKIDG I+ Y+ G F A RG+G G+D++ ++ I ++P R+ + Sbjct: 130 GK---KISFTVEPKIDGVSISAVYKNGLFSLGATRGNGTVGDDITQNLKTIRSLPLRLET 186 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237 + PE +EVRGE Y+S DF LN + G+ +ANPRNA +G L++L+P + R L Sbjct: 187 PDPPEYLEVRGEAYMSPKDFERLNAQREKEGKVLFANPRNATAGSLKQLDPRVVAERPLA 246 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 +G GK + K Q E L ++ +G P+ + + + ++ R+ LPY Sbjct: 247 VVFYGAGKLVGMKCKTQEEWLNFLKKIGLPIPIVFWVCSNENEVYEAIGKLNECRNQLPY 306 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DG KV+E+ LG A++PRW ++K+ ++A TRL ++ Q+GR+G +TPVA Sbjct: 307 PTDGAAVKVNEWEYYSLLGYTAKAPRWAFAYKYGAERAKTRLNNVIFQVGRSGTITPVAE 366 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 ++PV + G ++ ATLHN D +K L D+++GD V +++AGEVIP+VV + Sbjct: 367 MDPVFLSGTTVSRATLHNFDQVKRL-----------DVKIGDVVYLEKAGEVIPEVVGVD 415 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +N+R + P FCP C ++ + G + RC C AQ ER+ HF Sbjct: 416 LNQRRGTEKEIVPPEFCPSCGEKLSWE-----GIFL---RCENE-NCPAQLKERILHFAQ 466 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R+A +I+GLG+ +D D ++ ADI+ L + N+ G S N Sbjct: 467 RNAMDIQGLGESLVDQLV---DKGI-VKDVADIYDLDEET------LVNLDRMGKKSAQN 516 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +I + + L R IF LGI H+G + + LA+Y+ + ++H ++ Sbjct: 517 LLKAIEESKKKDLSRLIFGLGIPHIGQKASEDLARYFGTMDK--------LSHATEE--E 566 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 L+ +P +G+I+A++IV +++ N +E L K+ + + S + K V TGT Sbjct: 567 LLNLPFIGEIMARSIVNYFRKEANRRRLEKLRKKGLNFVSTLSQASSGTLSGKTFVITGT 626 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L + + AQ+ +++ G VS LSRKT ++VG +PGSKL++A++LG+ ++NE++ L + Sbjct: 627 LSEPRESIAQKIISK-GGRVSNSLSRKTSYLVVGSDPGSKLQEAKKLGIPLINEQELLEM 685 Query: 718 LQ 719 L Sbjct: 686 LH 687 >gi|296390104|ref|ZP_06879579.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAb1] Length = 794 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 218/623 (34%), Positives = 335/623 (53%), Gaps = 50/623 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A + ++ L E+ H+ YY +P I D+EYD L R A+ +P L P+ P Sbjct: 5 QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLL---TPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR--------FWQKKDDNSI 126 ++ G + +V H IP LSL + +DL F R+ + Sbjct: 62 TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 ++ EPK+DG +++ YE+G+ V A RGDG +GED+++ +R I +P ++ P+I+ Sbjct: 122 EYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPDIL 181 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEV++SK F ALN + + G K +ANPRNAA+G LR+L+ +R L F +G G Sbjct: 182 EVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S Q +L+ R G P++ +R YY+++ R L Y+IDG+V+ Sbjct: 242 QVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG RAR PRW I+HKF ++ T LL ++ Q+GRTG +TPVARL+PV + Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D + L +R+GD V+++RAG+VIP+V+ +++ R D Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSR 478 AQ P CP+C S V R K K A +RC G L+C AQ + + HFVSR Sbjct: 411 AQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSR 470 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG + ++ D + PAD++TL Q + + GF ++S NL Sbjct: 471 RAMDIDGLGDKIVEQLV---DRGL-VASPADLYTLTYEQ------VFELEGFAELSTNNL 520 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I R SL RFIF+LGI VG E A+ LA+ S + + + ++ + Sbjct: 521 LAAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572 Query: 599 IRVPLVGDIIAQAIVEFYQNPRN 621 +P VG +A I F+ + N Sbjct: 573 --LPDVGAEVAYEIHNFFADEHN 593 Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%) Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL FI L I + A A LA + S ++ II DWL L +V + + Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGS-------LDGII---RADWLDLRQVERLPERA 673 Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660 A+++ +F+ P N+ A+EA L+E G H ++ +E L V TGTL+ Sbjct: 674 AKSLRDFFDEPANVQRALAIEAQLRE----FGMHWQSERKAVEGLPLAGQTWVLTGTLEA 729 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R A++ + LGA V+ +S KT ++ G GSKL KA +LGVK+++E+ L L + Sbjct: 730 MSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVLDEDGLLKLFDE 789 Query: 721 YNTT 724 + Sbjct: 790 HGVA 793 >gi|269303032|gb|ACZ33132.1| DNA ligase, NAD-dependent [Chlamydophila pneumoniae LPCoLN] Length = 662 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/706 (33%), Positives = 392/706 (55%), Gaps = 50/706 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E ++ +L +E+ HD YY +P I D EYD R+ I + P+ P+ Sbjct: 4 ENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLWSPS-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G + + V+H P LS+ ++ E+L +F +R+ +K S +T+E KI Sbjct: 62 -TRLGDRPSGTFSVVSHKEPMLSIANSYSKEELSEFFSRV----EKSLGTSPRYTVELKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + IRYE V A RG+G GED++ IR I ++P L + PE IEVRGEV+ S Sbjct: 117 DGIAVAIRYEDRVLVQALSRGNGKQGEDITLNIRTIRSLPLRLPEDAPEFIEVRGEVFFS 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 + F +N++ + + +ANPRNAA G L+ L+P ++ R L ++ L + Sbjct: 177 YSTFQTINEKQQQLEKTIFANPRNAAGGTLKLLSPQEVAKRKLEISIYNLIAPGD--NDS 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 YE LQ+ GFPV+ R +T ++S +++ R++LP +IDG V KVD + Q+ Sbjct: 235 HYENLQRCLEWGFPVSGKPRLCSTPEEVISVLKTIETERASLPMEIDGAVIKVDSLASQR 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG + RW +++K+A ++A T L DI +Q+GRTG+LTPVA+L PV + G+L++ A+L Sbjct: 295 VLGATGKHYRWALAYKYAPEEAETLLEDILVQVGRTGVLTPVAKLTPVLLSGSLVSRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 +NED I +DIR+GD V V + GEVIPKVV + +R ++ ++ P F Sbjct: 355 YNEDEIH-----------RKDIRIGDTVCVAKGGEVIPKVVRVCREKRPEGSEVWNMPEF 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S VVR+ + + + V C A +E+++ FV R A NI+ LG + + Sbjct: 404 CPVCHSHVVREEDRVSVRCVNPE-------CVAGAIEKIRFFVGRGALNIDHLGVKVITK 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ + AD+F Q +T + I G + S N+ +SI + +++ L+RF Sbjct: 457 LFE----LGLVHTCADLF------QLTTEDLMQIPGIRERSARNILESIEQAKHVDLDRF 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + +LGI +G +A LA ++ + ++ +I+ ++ LSL VG+ +A AI Sbjct: 507 LVALGIPLIGIGVATVLAGHF-------ETLDRVISATFEELLSL---EGVGEKVAHAIA 556 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 E++ + ++ ++ ++++ I + K+ S+ K V TGTL+ + R A+ + Sbjct: 557 EYFSDSTHLNEIKK-MQDLGVCISPYHKSGSTCF-GKAFVITGTLEGMSRLDAETAIRNC 614 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V + +S++TD +++G+NPGSKLEKA++LGV I+++E F L+ Sbjct: 615 GGKVGSSVSKQTDYLVMGNNPGSKLEKARKLGVSILDQEAFTNLIH 660 >gi|322652148|gb|EFY48510.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 571 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 217/606 (35%), Positives = 346/606 (57%), Gaps = 47/606 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +LQ + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++ Sbjct: 295 ALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVS 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P Sbjct: 355 NATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIV 403 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 404 FPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDK 457 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D + E + PAD+F L + K+ + G S N+ +++ K + + Sbjct: 458 IIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAKATT 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RF+++LGIR VG A LA Y+ + + A D+ L +VP VG ++A Sbjct: 508 FARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGIVVA 557 Query: 610 QAIVEF 615 + F Sbjct: 558 THVFNF 563 >gi|329121050|ref|ZP_08249681.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965] gi|327471212|gb|EGF16666.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965] Length = 666 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 231/703 (32%), Positives = 382/703 (54%), Gaps = 48/703 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L +E+ YH YY KP I D E+D + R +P+L + P ++G Sbjct: 9 KVKKLREELRYHSYLYYVLDKPEISDFEFDKMYRELVDFESKYPELITQDSPT---QRVG 65 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G+ KV P LSL +N ++L +F + + + ++I + E KIDG + Sbjct: 66 GKATGDFKKVEFKKPMLSLSNAFNGKELIEFDRSV---KETLNTDNIEYITELKIDGLSM 122 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 + YE+GK + RGDG GEDV+A ++ I +IP + N P IE+RGEV++ ++ F+ Sbjct: 123 NLIYEEGKLIRGLTRGDGKVGEDVTANVKTIKSIPLYIE-NAPPYIEIRGEVFMPRSSFV 181 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 +LN++ A G P+AN RNAASG +R+L+P +R L+FF + +G+T I K Q +L Sbjct: 182 SLNEKRDAAGIMPFANCRNAASGSIRQLDPNVTASRNLDFFAYSVGETEGIEIKNQESLL 241 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ F VN ++ N+ ++ NE + R L YD DG+V KV++F Q LG Sbjct: 242 NLLKKFHFKVNPNYKKINSIEKVIEIINEWQEKRHHLGYDTDGMVVKVNDFEQQNVLGAT 301 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++ P+W I++K+ ++A T + +I + +GRTG+LTP A L+ V I G ++ ATLHN ++ Sbjct: 302 SKDPKWAIAYKYPPEEAETVVENIIVTMGRTGVLTPSADLKSVQIAGTVVKRATLHNMNF 361 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I+ +DIR+GD V + ++GE+IP++ ++ N+R + F PS CP+C+ Sbjct: 362 IE-----------EKDIRIGDIVKIYKSGEIIPEISVVLKNKRTGKEKKFIMPSECPLCK 410 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 ++ R A+RC C E L HF SRDA NIEGLG +D Sbjct: 411 HKIYRTEGE------VAYRCINP-DCGGVIRENLIHFASRDAMNIEGLGPAVIDGLL--- 460 Query: 499 DPAFS-IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A++ I AD + L++ I I G+ S NL SI +N L +F+F+L Sbjct: 461 --AYNLIENIADFYELRKDD------IIQIERMGEKSAKNLLTSIENSKNRGLSKFLFAL 512 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G + + +++ + ++I+ ++ + D S+ V +G+I A+ I ++++ Sbjct: 513 GIRHLGEKGSELISEKF-------KDIDVLMNASVD---SIKSVSGIGNITAEHIYKYFK 562 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 N +N +E L K+ + + +V TG L I R +A E + LG + Sbjct: 563 NEKNKKIIERLKNHGILMKLNERKSEGNAFKGHNVVLTGKLSNIGRREAGEIIKALGGNL 622 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +++ T ++IVG+N GSKLEKA++ G+KI+NE FL ++ Sbjct: 623 QSTVTKTTTLVIVGENAGSKLEKAREKGIKIINENDFLKIINN 665 >gi|329120426|ref|ZP_08249092.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC BAA-1200] gi|327462110|gb|EGF08438.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC BAA-1200] Length = 887 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 268/846 (31%), Positives = 408/846 (48%), Gaps = 179/846 (21%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL+ L Y YY P + D+EYD L R +A+ A P+L + P+ P ++ Sbjct: 72 RELTDLLNRYGYE---YYTLDAPSVPDAEYDRLFRELEALEAAHPEL---KLPDSPTQRV 125 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIED---------LRKFITRIYRFWQKKDDNSIFFT 129 GG +V H +P LSL ++ +D + F R+ + + Sbjct: 126 GGAPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMTAFDERVRGGLGGANPQ---YV 182 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188 +EPK DG +++ Y G AA RGDG SGEDV+ I+ + IP R+ + P +IE+R Sbjct: 183 IEPKFDGLAVSLLYRDGVLQQAATRGDGASGEDVTQNIKTVSNIPLRLHGADTPALIEIR 242 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246 GEV + K DF ALN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + Sbjct: 243 GEVLMLKADFAALNRRQEEAGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQ 301 Query: 247 SEIFA-KGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 FA + + L+ LGF + G ++++Y +M+ R LPY+IDG+V Sbjct: 302 EGGFAAESHIQELEYCGTLGFSLPEGNYGCFGNIAEVLAFYEQMQQKRPALPYEIDGMVV 361 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +G Sbjct: 362 KVNSLAQQRELGFISRAPRWAIAHKFPAEEALTTVEAIDVQIGRTGAVTPVARLQPVFVG 421 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER--- 421 G +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +++ R Sbjct: 422 GVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVVLERRPMK 470 Query: 422 -----------------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458 P P+ P CPIC+S + R+ G+ VA RC Sbjct: 471 AATVSNDTNAQNDLFEQRPSEKTQPAYPPYRLPENCPICRSPIERE----EGEAVA--RC 524 Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TL 513 +GG+ CSAQ+ + L HF SR A +I+GLG++Q++ + +R AD++ L Sbjct: 525 SGGMLCSAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRLDVPVL 580 Query: 514 QRRQQTSTTKIENIL-GFGDVSVT-----------NLYDSINKRRNISLERFIFSLGIRH 561 Q+ ++T+ + EN+ G + S N+ I + L RF+F+LGIRH Sbjct: 581 QKMKETAE-QSENVSDGLSNTSAAKPKKQPTKWAENIIAGIENSKTPELARFLFALGIRH 639 Query: 562 V--------------------------------GAEIARSLAKYYLSYQNFAQEINNIIA 589 V G +ARS+A ++ A I+ ++A Sbjct: 640 VGERTAKTLAQAFGTLDTVRRAPEPVLACLPDIGEVVARSVAHFFAQDAQQAM-IDELLA 698 Query: 590 HN-----------------NDDWLSLIRVPLVGDIIAQAIVEF----------------- 615 WL+ + + + AQA+ E Sbjct: 699 AGVAPKTQPATLPVLRHAEPQRWLARLPDFKISETKAQALWELAGKKTDALLTDQALPAD 758 Query: 616 YQNPRNICAVEALLKEV---------SPSIGRHEKNVSSEIEN--------------KKL 652 +Q R++ E LL+ S GR + S I + K Sbjct: 759 WQAWRSVPQNETLLRHTIAFLNELDQRSSRGREAAHSESSIADTANLSDGLNEAVAGKTF 818 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL ++R +AQ + G VS +S+KTD +I G+ GSKLEKA LGV ++ EE Sbjct: 819 VLTGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVIAGEAAGSKLEKALALGVAVLGEE 878 Query: 713 QFLFLL 718 + L +L Sbjct: 879 ELLAML 884 >gi|325129804|gb|EGC52612.1| DNA ligase, NAD-dependent [Neisseria meningitidis OX99.30304] Length = 841 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 267/825 (32%), Positives = 406/825 (49%), Gaps = 169/825 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALERNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 + AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV + K DF ALN Sbjct: 161 IQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y M+ R LPY+IDG+V KV+ + Q +LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 393 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 394 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAEAPAANQTQSVPLYKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++T+ T Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556 Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRH------- 561 + + SV N+ I + L RF+F+LGIRH Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616 Query: 562 -------------------------VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 +G +A S+A ++ + A I+ ++A Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQAM-IDELLAAGVAPQT 675 Query: 597 SLIRVPL-----------------VGDIIAQAI-------VEFYQN-------------- 618 + +P + + AQA+ +E QN Sbjct: 676 QAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSE 735 Query: 619 PRNICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 P+N +E L + PS + ++ + K V TGTL ++R +AQ + Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840 >gi|325135742|gb|EGC58354.1| DNA ligase, NAD-dependent [Neisseria meningitidis M0579] Length = 841 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 267/825 (32%), Positives = 406/825 (49%), Gaps = 169/825 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALERNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 + AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV + K DF ALN Sbjct: 161 IQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y M+ R LPY+IDG+V KV+ + Q +LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 393 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 394 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAEAPAANQTQSVPLYKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++T+ T Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTV 556 Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRH------- 561 + + SV N+ I + L RF+F+LGIRH Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616 Query: 562 -------------------------VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 +G +A S+A ++ + A I+ ++A Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQAM-IDELLAAGVAPQT 675 Query: 597 SLIRVPL-----------------VGDIIAQAI-------VEFYQN-------------- 618 + +P + + AQA+ +E QN Sbjct: 676 QAVTIPPARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSE 735 Query: 619 PRNICAVEALLKEVS--PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 P+N +E L + PS + ++ + K V TGTL ++R +AQ + Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQALIEAA 795 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840 >gi|260584784|ref|ZP_05852529.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633] gi|260157441|gb|EEW92512.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633] Length = 668 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 234/724 (32%), Positives = 388/724 (53%), Gaps = 79/724 (10%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 SIEQ ++ L ++++ YY +P + D EYD + +P L S+ P Sbjct: 4 SIEQ---KVQQLREQLNRWSHEYYVQDRPTVTDHEYDETYHELVRLETEYPQLVTSDSPT 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++GG + KVTH P LSL ++ EDL+ F RI +K + +I + E Sbjct: 61 ---QRVGGVVLEGFEKVTHQNPMLSLSNAFSKEDLQAFDDRI----KKLTNRTIDYVCEL 113 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG + + Y+ G+ V A RGDG GED++ IR + ++P LSL P IEVRGE Y Sbjct: 114 KIDGLSVALTYQDGQLVLGATRGDGVIGEDITHNIRTVKSVP--LSLEHPWSIEVRGECY 171 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + K F LN G + +ANPRNAA+G LR+L+ +R L F++ + Sbjct: 172 MPKKSFQQLNQLREEEGLEVFANPRNAAAGSLRQLDSKVAASRNLAVFLYQSPSVETLEV 231 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E+L+KM+ LGF N ++ + ++ +M R+ LPY+IDG+V KV++F Sbjct: 232 ASQMELLEKMQALGFVTNQESVLCHSIDEVWAFIEKMTVERNNLPYEIDGIVIKVNDFKA 291 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+++G ++P+W I++KF ++A T + DI+ +GRTG++TP A ++ V + G + A Sbjct: 292 QEEIGFTVKAPKWAIAYKFPAEEAQTIVRDIEWTVGRTGVVTPTAVMDAVFLAGTTVKRA 351 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN D I+ RDIR+GD V++ +AG++IP+V +I+++R +P+ FP Sbjct: 352 SLHNVDLIR-----------ERDIRIGDTVVIHKAGDIIPEVTRVILDKRPEGLEPYEFP 400 Query: 432 SFCPICQSRVV--------RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 CP C + +V R +NPK C A E L HFVSRDA N+ Sbjct: 401 KECPSCSNPLVHLEEEVALRCMNPK---------------CPALLKEGLTHFVSRDAMNM 445 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 G+G + + F+S ++ AD++ L Q + KI+ + S + +I Sbjct: 446 SGVGTRIIHQLFES----GLVQDVADLYHLTMEQLLTLDKIK------EKSAQKILQAIE 495 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + SLER + LGIR+VG++ A+ LA ++ + +N + L+ + Sbjct: 496 TSKQNSLERLLTGLGIRNVGSKAAKDLAMHFETMENLQKATVE----------ELVAIEG 545 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFT 655 +G +IA +++ ++ N V+ +L+E+ + +G+ + +S + + K +V T Sbjct: 546 LGLVIAHSVLAYF----NQETVQDMLEELKEAGVNMRYLGKAKVAISEDSLLAGKTVVLT 601 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL+++ R +A+E + LG V+ +S+KTDI+I G GSKL KA+ LG+ + +EEQF Sbjct: 602 GTLEQMTRQEAKEAIESLGGKVTGSVSKKTDIVIAGAQAGSKLTKAESLGILVWDEEQFR 661 Query: 716 FLLQ 719 +++ Sbjct: 662 TMIE 665 >gi|75906538|ref|YP_320834.1| NAD-dependent DNA ligase LigA [Anabaena variabilis ATCC 29413] gi|123745307|sp|Q3MGE7|DNLJ_ANAVT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|75700263|gb|ABA19939.1| NAD-dependent DNA ligase [Anabaena variabilis ATCC 29413] Length = 676 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 239/713 (33%), Positives = 383/713 (53%), Gaps = 62/713 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL L Q+ SY YY P++ D+ YD L R + P+L P+ P +I Sbjct: 12 EELRRLLQQASY---AYYVLDAPVMEDAVYDQLYRELQQLEIQHPELV---TPDSPTQRI 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIFFTLEPKIDGT 137 G V H+IP SLE +N+E+L+ + R W+++ + E KIDG+ Sbjct: 66 GERPATQFLSVRHNIPLYSLENAFNVEELQAWDQR----WRRQVAPTEAEYVAELKIDGS 121 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII---EVRGEVYIS 194 I + YE G V A RGDG +GED++ +R I +IP LS + E I EVRGE ++ Sbjct: 122 AIALTYENGILVRGATRGDGVTGEDITQNVRTIRSIPLRLSFDGIENIGKVEVRGEAFLP 181 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTSEIF 250 F +N+E G + +ANPRNAA+G LR+L+ + R L+FF + L G Sbjct: 182 LEVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSKIVARRRLDFFAYTLHISGMDDASI 241 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Q+E L+ ++ +GF VN+ + + + YY + R LPY DG+V K++ F Sbjct: 242 ANTQWEALELLQKMGFRVNSQHQLCQSLAEVADYYRYWDTERLNLPYMTDGVVLKLNSFK 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG R PRW ++ K+ ++A TR+ +I + +GRTG LTP+A++ PV + G ++ Sbjct: 302 LQEQLGFTQRFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAQMRPVQLAGTTVSR 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L DIR+GD V+V++AGE+IP+VV ++ R D QPF Sbjct: 362 ATLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVLKELRPVDTQPFIM 410 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C VVR+ TG+ V RC +C+A ++H+VSRDA +I+G+G++ Sbjct: 411 PTHCPVCGQPVVRE----TGEAVT--RCVNA-SCAAILKGSIEHWVSRDALDIKGVGEKL 463 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + E + AD+++L Q ++ G+ S L ++I + +N Sbjct: 464 VHQLVDKE----LVHSVADLYSLTNEQLFVLERM------GEKSAQKLIEAIAQSKNQPW 513 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R ++ LGIRHVG+ A+ L++ Y + + + IA + +G IAQ Sbjct: 514 SRVLYGLGIRHVGSVNAQLLSEKYRAVAELSSAKQSDIAG----------IYGIGAEIAQ 563 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQRHK 665 ++ ++++ N +E L+ E+ N + ++ K V TGTL ++R + Sbjct: 564 SVYQWFRISANQRLIER-LQAAGLQFANTEEISAVDNANLKLVGKTFVITGTLPTLKRDE 622 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + + G ++ +S+KTD ++VG++ GSKLEKAQ LG+K ++E + L +L Sbjct: 623 AKALIQKAGGKITESVSKKTDYLVVGEDAGSKLEKAQTLGIKQLSEAELLKIL 675 >gi|291166519|gb|EFE28565.1| DNA ligase, NAD-dependent [Filifactor alocis ATCC 35896] Length = 668 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 237/715 (33%), Positives = 390/715 (54%), Gaps = 60/715 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A K++ L + + Y+ YYQ P I D+EYD++ + ++ P L +E P+ Sbjct: 3 AEKKIKLLRERLEYYSAKYYQEDAPEISDAEYDSMMKELMSLEKEHPSLRSAESPS---E 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K+GG + + H +P LSL ++ E+L +F +I ++ I + +E KIDG Sbjct: 60 KVGGSYSKKFAEYVHRVPLLSLSNAFSYEELLEFDQKI-----RERCGDISYCVELKIDG 114 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + Y+KGKF++ A RG+G GE+V+ + I TIP+ L+ + + VRGEV++ K+ Sbjct: 115 LSVALEYKKGKFIHGATRGNGQQGENVTDNLNEIVTIPKELNQKVDLV--VRGEVFLPKD 172 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL-------GKTS 247 FL LN++ +G +ANPRNAASG LR+L+ ++IT R L+ F+ + K Sbjct: 173 RFLKLNEQQEDLGLPLFANPRNAASGSLRQLD-SNITKDRNLDIFIFNVQEWMDNSDKEK 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E + L + LGF + + ++ + R L +DIDG+V KVD Sbjct: 232 EQELNSHSKQLNYLDDLGFKTISPREHCESMEKVIEFIKYWTEHREELLFDIDGIVIKVD 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + ++ LG+ A++PRW I++KF +Q T + I +Q+GRTG+LTP+A L PV I G+ Sbjct: 292 ELNKREILGQTAKAPRWAIAYKFPAEQKETTIEAITVQVGRTGVLTPIAELTPVLISGST 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNEDYI +DIRVGDRV+V++AGE+IP+V ++ ++R Sbjct: 352 VSRATLHNEDYI-----------AMKDIRVGDRVIVQKAGEIIPEVHAVMKDKRDGTEVV 400 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP C + K VA +CT AC AQ R+ HFVS+ A +I+ G Sbjct: 401 FHMPHTCPSCGAAT-----QKIDGEVAV-KCT-NFACPAQLKRRMIHFVSKSAMDIDNFG 453 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + +++ I+ ADI+ L+ + + + GF S +NL SIN ++ Sbjct: 454 PSIVSSLYEN----GLIKNIADIYLLKEKD------LLQLNGFAKKSASNLISSINHSKS 503 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L + + +LGI VG + A+ L+K + S + + N DD L+R+ +G Sbjct: 504 RNLNQLLVALGIDFVGEKAAKVLSKNFSSLEELEK-------ANLDD---LMRIEEIGLK 553 Query: 608 IAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 AQ+I+ ++Q N +E L++ + SI ++N S KK V TGTL+ ++R + Sbjct: 554 TAQSILNYFQLEENRAVLERLVEYGVNTKSISGTDQNSSKVFSGKKFVLTGTLEGMKRSE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + G V + +S D ++ GD+PGSKL+KAQ+L + I+ +++FL ++ + Sbjct: 614 AKKIIETCGGEVMSAVSTSVDYLLAGDSPGSKLKKAQELNIPILTKDEFLVMVNE 668 >gi|317056400|ref|YP_004104867.1| DNA ligase, NAD-dependent [Ruminococcus albus 7] gi|315448669|gb|ADU22233.1| DNA ligase, NAD-dependent [Ruminococcus albus 7] Length = 659 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 228/710 (32%), Positives = 382/710 (53%), Gaps = 60/710 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A+K + L + ++YH YY + I D EYD L+ + A PDL R + P Sbjct: 5 ESAKKRIDELVEILNYHSRLYYVEDRNEISDYEYDMLQNELKKLEAANPDLIRKDSPT-- 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE KVTH + SL+ +++ +++R+F+ R+ ++ + F +EPKI Sbjct: 63 -QRVGGEAVSGFEKVTHKVQMGSLQDVFSFDEVREFVDRV-----RESVSDPVFVVEPKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++ Y G+ + RGDG GE+V+ ++ + +IP + ++P +IEVRGEVY+ Sbjct: 117 DGLSVSLEYHDGQLTVGSTRGDGFVGENVTENLKTVRSIPVTIDSSLP-MIEVRGEVYMP 175 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 +N FL+L E +P+ NPRNAA+G LR+ +P R L+ FV + + Sbjct: 176 RNVFLSLIKEQEDNDEQPFKNPRNAAAGSLRQKDPKIAAKRKLDIFVFNVQQVDGKELTA 235 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + L ++ LGF +Q +T I++ NE+ R LPYDIDG+V KVD+F + Sbjct: 236 HKQSLDYLKELGFKTVPDYKQVSTSDEIIARINEIGESRFDLPYDIDGVVIKVDDFKHRD 295 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG A+ P+W +++KF ++ +T+L+DI++ +GRTG +TPVA EPV + G ++ ATL Sbjct: 296 ILGATAKVPKWAVAYKFPPEEKNTKLIDIELNVGRTGAVTPVAVFEPVFLAGTQVSRATL 355 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+D I ++I +GD + V++AG++IP+V+ + E++ + F P Sbjct: 356 HNQDLII-----------EKNINIGDTIRVRKAGDIIPEVLGSV--EKNSEG-AFMLPDE 401 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C +++V+ + AA RC + C AQ + HF S+ A NI+GLG Q + Sbjct: 402 CPVCHTKLVKSEDE------AAVRCP-NVECPAQIFRSIVHFASKGAMNIDGLGPQIVRL 454 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ I AD++ ++ + + F + S NL +I K R++SL+R Sbjct: 455 LLDNK----LITSVADLYNIKEDDLLA------LDSFKEKSAHNLVTAIEKSRSVSLDRL 504 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 IF LGIR++G A+ L + + A+EI+ I G ++A Sbjct: 505 IFGLGIRNIGQASAKLLCAKFGGLDSIMSATAEEISGIDGF--------------GVVMA 550 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 Q++ + I ++ LKE + + K V TGTL ++R+ A+E Sbjct: 551 QSVYNAFHEEHMIALIQR-LKECGVNTEYEKVQQDDRFAGKTFVLTGTLPTLKRNDAKEL 609 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G S +S+KTD ++ G+ GSKL KAQ+LGVKI++EE+F+ +++ Sbjct: 610 IEKFGGKASGSVSKKTDFVLAGEEAGSKLTKAQELGVKIISEEEFMEMIK 659 >gi|257784913|ref|YP_003180130.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469] gi|257473420|gb|ACV51539.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469] Length = 705 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 241/731 (32%), Positives = 377/731 (51%), Gaps = 65/731 (8%) Query: 15 EQARK-ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E AR EL+ + +Y YY P + D+E+D L + A+P+L +ED Sbjct: 8 ETARAAELNRILNHAAY---AYYALDNPELTDAEFDRLLIELQQLEAAYPELI-TEDSY- 62 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GG ++ V H+ S++ N+E+L +++R N + +T E K Sbjct: 63 -TQRVGGYVSEQFEPVQHAARMYSMDDAMNLEELDAWLSRTDEALGASPTNPVAYTCELK 121 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---------NIPEI 184 IDG + + Y G+FV AA RGDG +GE+V+A + I +PR L+L + + Sbjct: 122 IDGLGVALTYRDGQFVRAATRGDGSTGENVTANVLTISDVPRELALAGLERVENRGLNQS 181 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG 242 IEVRGEVY+ K+ F+ LN++ A G++P+ANPRNAA+G LR+ +P IT R L F++ Sbjct: 182 IEVRGEVYMPKHSFIRLNEDADAAGKQPFANPRNAAAGSLRQKDPK-ITAHRDLETFIYA 240 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + Q+E L +R GF VN R+ + + + R L YDIDG+ Sbjct: 241 VADEGPLDVHSQWEFLNWLRSCGFNVNPHARRCLNAQEVHDFCAQALEQRGDLNYDIDGV 300 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD F+ Q+ LG +R+PRW I+ KF ++ T L +I IQ+GRTG+LTPVA +PV Sbjct: 301 VVKVDSFASQEALGFTSRAPRWAIAFKFPPEEKQTVLREIRIQVGRTGVLTPVAEFDPVT 360 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G+ I ATLHN D I+ +++R GD ++V +AG+VIP+VV ++N R Sbjct: 361 VAGSTIARATLHNLDEIR-----------RKNVREGDTIIVHKAGDVIPEVVGPVLNLRP 409 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 DA F P+ CP C S V+++ G++ A RC + C AQ +ERL H+ SR A + Sbjct: 410 ADAVEFQMPATCPSCGSPVIQE----EGEV--AFRCV-SIDCPAQAVERLIHWGSRKAMD 462 Query: 483 IEGLGKQQL-------------DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 I+GLG + + DF+ K + + ++ S I Sbjct: 463 IDGLGDELINRMVEEGVLSDVADFYDKLTEEMLACMPTGRVYDTDTADHLSGDSIP---- 518 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 G + + + + L R +F +G+RHVGA +A LA+ + S Q A IA Sbjct: 519 VGHTIAKKVMAKVEESKTRGLGRVLFGIGMRHVGANVAELLAQEFGSIQALATAPVEKIA 578 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIE 648 +P +G IA+++ EF+ P N+ +E L + V + E + + Sbjct: 579 E----------IPGIGPKIAESVHEFFSIPENVAVIERLRQAGVVLEEEKTENELPQTLA 628 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 V TGTL+ R +A + +GA VS +S+KT ++ G+ GSKL KA+ LGV + Sbjct: 629 GLTFVLTGTLEHFTRDEAGAQLKAMGAKVSGSVSKKTSFVVAGEAAGSKLTKAESLGVPV 688 Query: 709 MNEEQFLFLLQ 719 ++E +L+ Sbjct: 689 LDETALQQILE 699 >gi|152984776|ref|YP_001349158.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PA7] gi|190359272|sp|A6V7X3|DNLJ_PSEA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150959934|gb|ABR81959.1| DNA ligase, NAD-dependent [Pseudomonas aeruginosa PA7] Length = 794 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 217/623 (34%), Positives = 334/623 (53%), Gaps = 50/623 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A + ++ L E+ H+ YY +P I D+EYD L R A+ P L P+ P Sbjct: 5 QAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEHPQLL---TPDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR--------FWQKKDDNSI 126 ++ G + +V H IP LSL + +DL F R+ + Sbjct: 62 TQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEV 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 ++ EPK+DG +++ YE G+ V A RGDG +GED+++ +R I +P ++ P+I+ Sbjct: 122 EYSCEPKLDGLAVSLLYENGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPDIL 181 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEV++S+ F ALN + + G K +ANPRNAA+G LR+L+ +R L F +G G Sbjct: 182 EVRGEVFMSRAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFG 241 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S Q +L+ R G P++ +R YY+++ R L Y+IDG+V+ Sbjct: 242 RVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVF 301 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG RAR PRW I+HKF ++ T LL ++ Q+GRTG +TPVARL+PV + Sbjct: 302 KVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVA 361 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D + L +R+GD V+++RAG+VIP+V+ +++ R D Sbjct: 362 GVTVSNATLHNMDEVARL-----------GLRIGDTVVIRRAGDVIPQVMQVVLERRPAD 410 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSR 478 AQP P CP+C S V R + K A +RC G L+C AQ + + HFVSR Sbjct: 411 AQPIEVPEHCPVCGSAVERTQLVRRSKGRESLSEGAIYRCVGRLSCQAQLKQAIIHFVSR 470 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG + ++ D + PAD++TL Q + + GF ++S NL Sbjct: 471 RAMDIDGLGDKIVEQLV---DRGL-VASPADLYTLTYDQ------VFELEGFAELSTNNL 520 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I R SL RFIF+LGI VG E A+ LA+ S + + + ++ + Sbjct: 521 LAAIADSRTPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTY-------- 572 Query: 599 IRVPLVGDIIAQAIVEFYQNPRN 621 +P VG +A I F+ + N Sbjct: 573 --LPDVGAEVAYEIHNFFADEHN 593 Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 22/184 (11%) Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL FI L I + A A LA + S ++ II DWL L +V + + Sbjct: 624 SLAGFIDKLNIPFIAATGAEKLASRFGS-------LDGII---RADWLDLRQVERLPERA 673 Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660 A+++ +F P N+ A+EA L+E G H ++ +E L V TGTL+ Sbjct: 674 AKSLRDFLDEPANVQRALAIEAQLRE----FGMHWQSERKAVEGLPLAGQTWVLTGTLEA 729 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R A+E + LGA V+ +S +T ++ G GSKL KA +LG+K+++E+ L LL + Sbjct: 730 MSRDVAKEKLEGLGAKVAGSVSARTHCVVAGPGAGSKLAKANELGLKVLDEDGLLKLLDE 789 Query: 721 YNTT 724 Y Sbjct: 790 YGVA 793 >gi|239906999|ref|YP_002953740.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1] gi|239796865|dbj|BAH75854.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1] Length = 704 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 248/727 (34%), Positives = 372/727 (51%), Gaps = 79/727 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL L E Y YY P + D+ YDAL R A+ A P+LA DPN P ++ Sbjct: 14 RELRDLIHEYDYR---YYVLDDPTVEDAAYDALYRELKALEEAHPELA---DPNSPTRRV 67 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF----FTLEPKI 134 GG + H SL+ ++ R F+TR ++ D F F ++PK Sbjct: 68 GGAVLEGFASKPHRRRMYSLDNAMAEDEWRDFVTRAANKLER--DGVAFDAPAFWVDPKF 125 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-------SLNIPEIIEV 187 DG + I YE G + A RGDG GEDV+ +R + +P L L +P ++EV Sbjct: 126 DGLALEIIYENGVYAGALTRGDGEVGEDVTENVRTVRNVPLDLRPHAARAGLPVPRLLEV 185 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGEV +++ DF LN+ G K +ANPRNAA+G +R+L+ TR L FF + +G Sbjct: 186 RGEVVMTRQDFYELNERQREQGGKVFANPRNAAAGSVRQLDSRISATRPLTFFTYAVG-- 243 Query: 247 SEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 S+ + G ++ ++ LG PV G + T + Y+ M R LP++ Sbjct: 244 SQDWGDGLAGPGWATHSAVMAGLKALGLPVA-GQGKVVTADEVYPYFEAMGRQRQELPFE 302 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KVD +LQ+ LG R+PR+ ++ KF +A T L ID+Q+GRTG+LTPVA L Sbjct: 303 IDGVVVKVDSLALQEALGFTDRAPRFAVALKFPAHEAETVLKHIDVQVGRTGVLTPVAIL 362 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV++ G + ATLHNED IK +D+R GD V+V+RAG+VIP+VV ++ Sbjct: 363 EPVSLAGVTVARATLHNEDEIK-----------AKDLRPGDTVVVRRAGDVIPEVVRVVE 411 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ++R +A+P+ FP CP C S VR G+ AA RC LAC A + +FVS+ Sbjct: 412 DKRPAEAEPYDFPHVCPSCGSDAVR------GEGEAAWRCV-NLACPAMLRRGISYFVSK 464 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +IEGLG + + ++ PAD+F L ++ + + Sbjct: 465 SGLDIEGLGAKWVAALIDKG----MVKSPADLFDLTEADLLPLERMAE-----KSAANFV 515 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +++ SL + I +LGIR VG AR+LA ++ +++ + A + ++ L Sbjct: 516 AAVAAAKQSASLVKLIAALGIRQVGTRTARTLAGHF-------HDLDALGAASLEE---L 565 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEAL-------LKEVSPSIGRHEKNVSSEIENKK 651 +P +G +A +I EF+ N N +E + E P V + + K+ Sbjct: 566 TALPDIGPEVAGSIREFFANEANRELLERFKGIGLWPVGEAKPET----PAVQTALTGKR 621 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +FTG L + R AQ+ V G VV +S+K D ++ G +PGSKL KAQ LG+ I++ Sbjct: 622 FLFTGALPDLTREAAQKLVEAAGGVVVGSVSKKLDYLVAGADPGSKLAKAQALGITILSP 681 Query: 712 EQFLFLL 718 E F LL Sbjct: 682 EAFAALL 688 >gi|198274661|ref|ZP_03207193.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135] gi|198272108|gb|EDY96377.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135] Length = 666 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 236/704 (33%), Positives = 376/704 (53%), Gaps = 52/704 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +E+ H+ YY + P I D E+D L R + P+ D N P ++G Sbjct: 7 IDQLREELHTHNHNYYILNAPTISDQEFDRLMRELQDLEAKHPE---HYDENSPSVRVGS 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 ++N +V H P LSL ++ ++R+F R+ +K + E K DGT I+ Sbjct: 64 DLNKEFRQVEHKYPMLSLGNTYSETEVREFYERV----RKALNEDFEICCELKFDGTSIS 119 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 + YE G+ V A RGDG G+DV+ ++ I +IP R+ P E+RGE+ + F Sbjct: 120 LTYEDGRLVQAVTRGDGVRGDDVTDNVKTIRSIPLRLSGEGYPRRFEIRGEILMPWTVFE 179 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEML 258 LN E +ANPRNAASG L+ N + +R L+ +++ L E+ G YE L Sbjct: 180 ELNREREQREEPLFANPRNAASGTLKSQNSAVVASRKLDAYLYYL-LGEELPHDGHYENL 238 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 Q+ GF V++ +R+A T + + N R LP DG+V KV+ Q+ LG Sbjct: 239 QEAARWGFKVSSHMRKARTLEEVFDFINYWDLERKNLPVATDGIVLKVNSQRQQRNLGFT 298 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A+SPRW I++KF +QA T+LL + Q+GRTG +TPVA LEPV + G ++ A+LHN D Sbjct: 299 AKSPRWAIAYKFQAEQACTKLLKVTYQVGRTGAVTPVANLEPVQLSGTVVKRASLHNADI 358 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I+ L D+ +GD V V++ GE+IPK+ + + R ++ +F + CP C Sbjct: 359 IESL-----------DLHLGDMVYVEKGGEIIPKITGVDKDARPEGSEKVTFITHCPECG 407 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 SR+VR + AAH CT C Q R++HF+SR A NIEGLG + +D F++ Sbjct: 408 SRLVRYEDE------AAHYCTNEDGCPTQIKGRIEHFISRRAMNIEGLGPETVDQFYQE- 460 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I AD++TLQ I + G+ S N+ + K + + ER IF+LG Sbjct: 461 ---GLIHDVADLYTLQ------AADICRLNRMGEKSAENIIQGVEKSKTVPYERVIFALG 511 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IR VG +A+ +A+ + S I+++ + DD LI V +G+ IAQ+I+ ++ + Sbjct: 512 IRFVGETVAKKVARAFRS-------IDDLKSATLDD---LIHVDEIGEKIAQSILRYFHS 561 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 +N+ +E L+E + E+ + + ++ + +V +G R + + + + G Sbjct: 562 EKNLQLIER-LREAGVQMAISEEETAGQTDKLQGQSIVISGVFAHHSRDEYKALIEKHGG 620 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +S+KT I+ G+N G SKLEKA++LG++I+NEE+FL ++ Sbjct: 621 KNVGSISKKTSFILAGENMGPSKLEKAEKLGIRIVNEEEFLGMI 664 >gi|218281363|ref|ZP_03487841.1| hypothetical protein EUBIFOR_00406 [Eubacterium biforme DSM 3989] gi|218217455|gb|EEC90993.1| hypothetical protein EUBIFOR_00406 [Eubacterium biforme DSM 3989] Length = 667 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 247/708 (34%), Positives = 376/708 (53%), Gaps = 53/708 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S+ + + L +E+ + YY Y P I D EYD L + A+ +P++ D Sbjct: 1 MSMMDEKARILELRKELEKYSIEYYVYDNPSITDQEYDRLMQELMALEEKYPEMY---DA 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +I G + KVTH LSL ++N E++ +F+ RI + F +E Sbjct: 58 TSPSQRIIGSVLDGFEKVTHDTQMLSLSNVFNKEEIEEFVQRISESVSNPE-----FVVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRG 189 K DG + + Y+ G F A RGDG GEDVS ++ I +IP ++IPE+ +EVRG Sbjct: 113 CKYDGLAMALLYDDGNFTRAVTRGDGIVGEDVSNNVKTILSIP----MHIPEMRHVEVRG 168 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE 248 EVY+ K F LN G P+ANPRNAA+G +R+L+ + +R L+ + + S+ Sbjct: 169 EVYMPKASFEQLNKRQEEKGLAPFANPRNAAAGSIRQLDSSICASRKLDAYWYYFQNASD 228 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q E LQ M + F N + T I + E++ R LPY+IDG+V K++ Sbjct: 229 FAVQTQEEALQAMSKMHFRTNPLRKVCTTVEQIWQFIQEIQEKREDLPYEIDGMVIKLNN 288 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q++LG A+ PR+ ++KF ++ TRL DI I +GRTG +TP A LEPV + G + Sbjct: 289 LADQRRLGSTAKVPRYATAYKFPAQEVLTRLKDIVITVGRTGKITPNAVLEPVRVAGTTV 348 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A LHNED I +D+R+GD V+V++AGE+IP+VV + R P+ Sbjct: 349 SAAQLHNEDMIV-----------NKDLRIGDIVVVRKAGEIIPEVVTSVPERRDGTQVPY 397 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CPIC S +VR + AAH C C A+ +E + HF SRDA NI+ LG Sbjct: 398 KFPTTCPICGSHLVRLPDE------AAHYCINQ-DCPARVVESMIHFASRDAMNIDTLGD 450 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++++ + + DI+ L R K G+ SV L +SI K + Sbjct: 451 KKIEQLHE----WGYLNSIEDIYFLDRYYDELIEK----PGYQKKSVDKLLESIEKSKKQ 502 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L ++ LGIR VG + A LA+ + +I+ ++ H D L LI +G I Sbjct: 503 PLGVILYGLGIRQVGKKAAMILAEQF-------GDIDTLM-HACVDELVLIHD--IGLIT 552 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQ 667 A ++V F++ +N+ ++ +LK+ + + +K V S NK V TGTL+ R++A+ Sbjct: 553 ASSVVAFFKEEKNLHLID-VLKQAGCNFKQEKKQVVESRFTNKTCVLTGTLEHYTRNEAK 611 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + LGA VS +S+KTD +I G GSKL KAQ LGV M+EE+F+ Sbjct: 612 AILESLGANVSGSVSKKTDYVIYGTAAGSKLTKAQSLGVMTMSEEEFV 659 >gi|288801242|ref|ZP_06406697.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str. F0039] gi|288331853|gb|EFC70336.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str. F0039] Length = 666 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 237/717 (33%), Positives = 383/717 (53%), Gaps = 60/717 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ EQ R + L +E+ H+ YY + P I D +DAL ++ +A P++ D Sbjct: 1 MTTEQER--IIELRKELHQHNYNYYVLNAPQIDDFTFDALLHELQSLENAHPEMY---DA 55 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++G ++ S +V H P LSL +N +++ F + +F ++ E Sbjct: 56 NSPTQRVGSDLQESFEQVVHVYPMLSLSNTYNKQEVADFYNTVSKFLNGEE---FEICCE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 K DG I++RYE GK V A RGDG G+DV+A ++ I TIP VL N P + E+RGE Sbjct: 113 LKYDGLSISLRYEDGKLVRAVTRGDGTRGDDVTANVKTIKTIPLVLQGNDYPAVFEMRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249 V + F LN+E +ANPRNAASG L+ LNP + R L+ +++ L +I Sbjct: 173 VLMPWKVFDKLNEERRQQEEPLFANPRNAASGTLKSLNPVLVAKRSLDAYLYYL-LGEDI 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 G +E L+ + G + G+R+ ++ I ++ + R LP DG+V KV+ Sbjct: 232 NIDGHFERLEAAKRWGVKIGEGMRKVSSLEDIYAFIDYWDVERKNLPVATDGIVLKVNSL 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+ +G A++PRW I++KF ++ T+L + Q+GRTG +TPVA +EPV + G ++ Sbjct: 292 KQQQSMGFTAKNPRWAIAYKFKAERELTKLESVSYQVGRTGTITPVANMEPVLLAGTVVK 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATL+NED+IK D+ +GD V V++ GE+IPK+V + +++R QP Sbjct: 352 RATLNNEDFIKSF-----------DLHIGDYVYVEKGGEIIPKIVGVELSKRTEGMQPIE 400 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 F CP C +++VR G+ AA+ C + C Q +++HF++R A NI+ LG + Sbjct: 401 FIKTCPECGTQLVR----YEGQ--AAYYCPNDMGCPPQIKGKIEHFIARKAMNIDSLGPE 454 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI--LGFGDVSVTNLYDSINKRRN 547 +D ++ I+ AD++ L I++I G S + D+I K + Sbjct: 455 TIDSYYNKG----LIKDVADLYCL---------AIDDINEGGAHQKSAKKVIDAIEKSKQ 501 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + +R +F+LGIR VG AR LA+ + N+I + N L+ V VGDI Sbjct: 502 VPFDRVLFALGIRFVGETSARLLARKF----------NDINSLRNATAAQLLEVEGVGDI 551 Query: 608 IAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 IA ++V F+ + +NI +E L L+ P + K + +E K +V +G R Sbjct: 552 IATSVVTFFSDEKNIALIERLESYGLQMAMPVMDEGPK--GNVLEGKTIVISGIFTHHSR 609 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + QLG + +S KT ++ GDN G SKL+KA+ LGVKI++E++FL +++ Sbjct: 610 DEYKAMIEQLGGKNTGSISAKTSFVLAGDNMGPSKLQKAESLGVKILSEDEFLEMIK 666 >gi|309777086|ref|ZP_07672052.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53] gi|308915156|gb|EFP60930.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53] Length = 665 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 243/700 (34%), Positives = 379/700 (54%), Gaps = 56/700 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL + ++Y YY +P + D EYD + A+ +P + DPN ++G Sbjct: 8 ELRKILDRLAYE---YYVLDQPSMSDQEYDRYYQELVALEEKYP---QYRDPNSITQRVG 61 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G + + KV H LSL +N++DL F R+ + KIDG + Sbjct: 62 GVVLDAFTKVEHKRTMLSLGNAFNLDDLHAFDERVREVVPRVRYVVEL-----KIDGLAM 116 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGEVYISKND 197 ++ Y G+FV A RGDG GEDVS ++ I +IP +NIP +EVRGEVY+ Sbjct: 117 SLIYRDGRFVQALTRGDGVVGEDVSHNVKTIASIP----MNIPLQGEVEVRGEVYMPNAS 172 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN E G + +ANPRNAA+G +R+L+ + R L+ F + E E Sbjct: 173 FDMLNAEREKNGEELFANPRNAAAGSIRQLDSSIAAKRKLDAFWYYFVNAQEYDIHSHEE 232 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+KM + VN + ++ + ++ E+ R+TLPY IDG+V KVD+ Q +LG Sbjct: 233 ALEKMSEMHLRVNPLRKVCDSIAEVWAFIEEITKQRNTLPYAIDGMVIKVDDLDAQNRLG 292 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + PRW I++KF ++ T+LLDI + +GRTG +TP A LEPV + G ++ A LHNE Sbjct: 293 STVKVPRWAIAYKFPAEEVVTKLLDIVVTVGRTGRITPNAVLEPVRVAGTTVSAAQLHNE 352 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D IK +DIR+ D V+V++AG++IP+VV +V R+ + FP+ CPI Sbjct: 353 DMIK-----------EKDIRIQDDVVVRKAGDIIPEVVRPLVERRNDTQAVYHFPTHCPI 401 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR P+ AAH C C A+ +E + HF SRDA +I+ LG ++++FF K Sbjct: 402 CGSELVR--FPEE----AAHYCINQ-DCPARVVESMIHFASRDAMDIDTLGDKKIEFFHK 454 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 F + DI+ L+ +Q ++ ++ GF + SV L D+I + LE ++ Sbjct: 455 Q---GF-LNTIEDIYCLKEHKQ----ELIDLEGFKEKSVAKLLDAIEDSKKNPLEDLVYG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG + A+ LAK +L+ ++ ++A + ++ L+ + +G I A++I F+ Sbjct: 507 LGIRQVGKKAAKVLAKQFLT-------MDALMAASVEE---LVAIKDIGQITAESITAFF 556 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 P+N+ + A LK + + + S+ K +V TGTL ++ R+ A+ + LGA Sbjct: 557 HEPKNMELI-AHLKGYGLRMDTEAEQIQESQFSGKTVVLTGTLTQMTRNDAKALLESLGA 615 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 VS +S+KTD++I G+ GSKL KA LGV M+E+ F+ Sbjct: 616 NVSGSVSKKTDLVIYGEAAGSKLTKANSLGVMTMDEDTFM 655 >gi|313891779|ref|ZP_07825384.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E] gi|313119773|gb|EFR42960.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E] Length = 666 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 232/703 (33%), Positives = 387/703 (55%), Gaps = 48/703 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L +E+ YH YY KP I D E+D + R +P+L P+ P ++G Sbjct: 9 KVKKLREELRYHSYLYYVLDKPEISDFEFDKMYRELVDFESKYPELIT---PDSPTQRVG 65 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G+ KV P LSL +N ++L +F + + + ++I + E KIDG + Sbjct: 66 GKATGDFKKVEFKKPMLSLSNAFNGKELIEFDKGVK---ETLNTDNIEYITELKIDGLSM 122 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 + YE+GK + RGDG GEDV+A ++ I +IP + N P IE+RGEV++ ++ F+ Sbjct: 123 NLIYEEGKLIRGLTRGDGKVGEDVTANVKTIKSIPLYIE-NAPPYIEIRGEVFMPRSSFV 181 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 +LN++ A G P+AN RNAASG +R+L+P +R L+FF + +G+T I K Q +L Sbjct: 182 SLNEKRDAAGIMPFANCRNAASGSIRQLDPNVTASRNLDFFAYSVGETEGIEIKNQESLL 241 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ F VN ++ N+ ++ NE + R L YD DG+V KV++F+ Q LG Sbjct: 242 NLLKKFHFKVNPNYKKINSIEKVIEIINEWQEKRHNLGYDTDGMVVKVNDFAQQNILGAT 301 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++ P+W I++K+ ++ T + +I + +GRTG+LTP A L+PV I G ++ ATLHN ++ Sbjct: 302 SKDPKWAIAYKYPPEEEETVVENIIVTMGRTGVLTPSADLKPVQIAGTVVKRATLHNMNF 361 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I+ +DIR+GD V + ++GE+IP++ ++ N+R + F PS CP+C+ Sbjct: 362 IE-----------EKDIRIGDIVKIYKSGEIIPEISVVLKNKRTGKEKKFIMPSECPLCK 410 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 ++ R G++ A+RC C E L HF SR+A NIEGLG +D Sbjct: 411 HKIYRT----EGEV--AYRCINP-DCGGVIRENLIHFASRNAMNIEGLGPAVIDGLL--- 460 Query: 499 DPAFS-IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A++ I AD + L++ I I G+ S NL SI +N L +F+F+L Sbjct: 461 --AYNLIENIADFYELRKDD------IIQIERMGEKSAKNLLISIENSKNRGLSKFLFAL 512 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G + + +++ + ++I+ ++ + D S+ V +G+I A+ I ++++ Sbjct: 513 GIRHLGEKGSELISEKF-------KDIDVLMNASVD---SIKSVSGIGNITAEHIYKYFK 562 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 N +N +E L K+ + + +V TG L I R +A E + LG + Sbjct: 563 NEKNKKIIERLKDHGILMKLNERKSEGNAFKGHNVVLTGKLSNIGRREAGEIIKALGGNL 622 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +++ T ++IVG+N GSKLEKA++ G+KI+NE FL ++ Sbjct: 623 QSTVTKTTTLVIVGENAGSKLEKAREKGIKIINENDFLKIINN 665 >gi|265753576|ref|ZP_06088931.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA] gi|263235290|gb|EEZ20814.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA] Length = 665 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 243/706 (34%), Positives = 376/706 (53%), Gaps = 54/706 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +E+ H+ YY + P I D E+D L R + P+ D N P ++G Sbjct: 7 IDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRVGS 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMI 139 ++N + +V H P LSL ++ ++ +F R+ KK N F E K DGT I Sbjct: 64 DINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRV-----KKSLNEDFEICCEMKYDGTSI 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198 ++ YE GK V A RGDG G+DV+ ++ I +IP VL PE E+RGE+ + F Sbjct: 119 SLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVVF 178 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257 LN E A +ANPRNAASG L+ N + +R L+ +++ L + G YE Sbjct: 179 EELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L++ GF +++ R+ T + + R LP DG+V KV+ Q+ LG Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+GL D+ +GD V V++ GE+IPK+V + N R F ++CP C Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR G+ AA+ CT AC Q +++HF+SR A +I+GLG + +D F++ Sbjct: 407 GSKLVR----YEGE--AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 IR AD++TL+ T+ I N+ G+ S N+ I + + + ER +F+L Sbjct: 461 G----LIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +AK + S A + DD LI V +G+ IAQ+I+ ++ Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA-------SLDD---LIHVDEIGEKIAQSILLYFA 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 NP+N +E L+ + E++ S ++ K +V +G R + +E + + G Sbjct: 561 NPKNRDIIER-LRVAGVRLEADEEDTSGHTDKLAGKSVVISGVFAHHSRDEYKELIEKHG 619 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +S KT ++ GDN G SKLEKAQ+LGV I++EE+FL +++ Sbjct: 620 GKNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665 >gi|114565926|ref|YP_753080.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318951|sp|Q0AZZ5|DNLJ_SYNWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114336861|gb|ABI67709.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 661 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 243/711 (34%), Positives = 390/711 (54%), Gaps = 72/711 (10%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +E+ HD YY P+I DS YD L + + +P ++ P ++ G Sbjct: 7 IKELREEMQKHDYHYYILDAPLISDSGYDRLMQELKKLEEEYPQYITADSPT---QRVAG 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + + V H P LSL+ ++ +DL +F RI R + ++ + E KIDG I Sbjct: 64 KASEKFSPVRHRFPLLSLDNAFSYQDLLEFDRRIGRVAR-----TLSYMAELKIDGVSIA 118 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YE G + AA RGDG GEDV+A IR I TIP L ++P + EVRGEV++ K +F+ Sbjct: 119 LVYENGVLLNAATRGDGLVGEDVTANIRTIKTIPLRLRHSLPRL-EVRGEVFMPKQEFIR 177 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY---- 255 LN+E G + +ANPRNAA+G LR+L+P R L+ FV+ + I+ +GQ Sbjct: 178 LNEEKEEKGERVFANPRNAAAGSLRQLDPRVTAGRALSAFVYDI-----IYMEGQTLAEQ 232 Query: 256 -EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E M+ LG PVN VR + ++++ E R LPY+IDG+V K++ + +++ Sbjct: 233 QEAWHFMQELGLPVNPEVRFCADINAVLAFTEEYAEKRHELPYEIDGVVVKLNTLAEREE 292 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ARSPRW +++KF ++ TRLL ++I +GRTGI+ P A LEPV + G ++ A++H Sbjct: 293 LGATARSPRWAMAYKFPAEEKETRLLGVEINVGRTGIIAPTALLEPVFLAGTTVSRASMH 352 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D IK +D+R+GD VL+ +AG++IP+++ + +R + + + P C Sbjct: 353 NFDLIK-----------EKDLRIGDMVLLHKAGDIIPEIIASLPEKRSGEERVITPPENC 401 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S+V R G++ A+RC + C A+ E L F SR A +I+GLG ++ Sbjct: 402 PACDSKVAR----FAGEV--AYRCE-NINCPARLKESLIFFASRGAMDIDGLGSAVIEQL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + ++ D++ L+ + T+ ++ G S NL +IN+ ++ L R + Sbjct: 455 VNKD----MVKRIDDLYRLREEEITALERM------GPKSAANLIKAINESKSRPLSRLL 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL-----SLIRVPLVGDIIA 609 +LGIRH+GA A+ L+++ H+ DD+ +L +P +G +A Sbjct: 505 TALGIRHIGARSAKILSRHI---------------HDIDDFYKLGVENLTSIPEIGPKMA 549 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQ 667 +++V F+ PRN +E LK++ + R E + E ++ K V TGTL + R +A Sbjct: 550 ESMVNFFAEPRNRETIED-LKDLGVNT-REEAIEAGEQLLQGKTFVLTGTLPSLTRQQAS 607 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + G VS+ +S+KT ++ GD+PGSKL+KA QL + I++E FL LL Sbjct: 608 EMIESRGGKVSSSVSKKTSYVVAGDDPGSKLDKALQLELTILDEAGFLNLL 658 >gi|255009394|ref|ZP_05281520.1| putative DNA ligase [Bacteroides fragilis 3_1_12] gi|313147153|ref|ZP_07809346.1| DNA ligase [Bacteroides fragilis 3_1_12] gi|313135920|gb|EFR53280.1| DNA ligase [Bacteroides fragilis 3_1_12] Length = 665 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 236/707 (33%), Positives = 376/707 (53%), Gaps = 52/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L ++ H+ YY + P I D E+D L R + P+ +D N P + Sbjct: 4 KEKIDQLRIQLHQHNYNYYVLNAPEISDKEFDDLMRELQTLEQEHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK + A RGDG G+DV+ ++ I +IP VL N P++ E+RGE+ + Sbjct: 117 SISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGNNYPDVFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + +R L+ +++ L + G Y Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF ++ +R+ T + + N R L DG+V KV+ QK L Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWNVERKNLNVATDGIVLKVNSLKQQKNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNTVSYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + V R + F + CP Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDVAARFMIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R G+ AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + + I AD++ Q +T I+N+ GD S N+ I + + I ER IF Sbjct: 459 RLD----LIHNTADLY------QLTTDDIKNLDRMGDKSAENIIRGIMQSKEIPFERVIF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + +I+ N D +L+ + +G+ IAQ+I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSF----------KDIVELENADLETLVSIDEIGEKIAQSILNY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + N N ++ LK + R E+++S ++ + +V +G R + ++ + + Sbjct: 559 FANDSNRKLIDR-LKIAGLQLYRPEEDLSEHTDKLAGQSIVISGVFTHHSRDEYKDLIEK 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ GDN G +KLEKA +LG+KIMNEE+FL L+ Sbjct: 618 HGGKNVGSISAKTSFILAGDNMGPAKLEKANKLGIKIMNEEEFLKLI 664 >gi|119512036|ref|ZP_01631131.1| DNA ligase [Nodularia spumigena CCY9414] gi|119463326|gb|EAW44268.1| DNA ligase [Nodularia spumigena CCY9414] Length = 678 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 239/713 (33%), Positives = 377/713 (52%), Gaps = 61/713 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL L Q+ SY YY P++ D+ YD L R + +P+ P+ P ++ Sbjct: 12 EELRQLLQQASY---AYYVLDAPMMEDAVYDQLYRELQELEIKYPEFI---TPDSPTQRV 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + V H+IP SLE +NI++L+ + R R Q ++ + E KIDG+ Sbjct: 66 GEKPATHFTSVRHNIPLYSLENAFNIDELQIWDQRWRR--QTPKIEAVEYVSELKIDGSA 123 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-----EIIEVRGEVYI 193 + + YE G V RGDG GED++ +R I +IP L LN E IEVRGEV++ Sbjct: 124 LALTYENGILVRGVTRGDGVVGEDITQNVRTIRSIP--LRLNFAGAKSLEKIEVRGEVFL 181 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTSEI 249 F +N E G +ANPRNAA+G LR+L+P + R L+FF + L G Sbjct: 182 PLEVFKQINAERQKAGEHIFANPRNAAAGTLRQLDPRIVAQRRLDFFAYTLHISGMDDAS 241 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A Q+E L+ + +GFPVN + + + YY + R LPY DG+V K++ F Sbjct: 242 IANTQWEALELLEKMGFPVNPNHKLCRSLTEVAQYYQSWDTKRLNLPYMTDGVVVKLNPF 301 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ+QLG + PRW ++ K+A ++A TR+ +I + +GRTG LTP+A++ PV + G ++ Sbjct: 302 KLQEQLGFTQKFPRWAVALKYAAEEAPTRVENISVNVGRTGALTPLAQMRPVQLAGTTVS 361 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN D I L DIR+GD V+V++AGE+IP+VV ++ R D PF Sbjct: 362 RATLHNSDRILQL-----------DIRIGDTVIVRKAGEIIPEVVRVLTELRPDDTVPFI 410 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C VVR+ +G+ A RC +C+A ++H+VSRDA +I+G+G++ Sbjct: 411 MPTHCPVCGQPVVRE----SGE--AVTRCVNA-SCAAILRGEIEHWVSRDALDIKGMGEK 463 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + + AD++ L +T ++ + G S L D+I + +N Sbjct: 464 LVHQLVDRH----LVNSVADLYDL------TTERLCALERMGQKSAQKLIDAIAQSKNQP 513 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R ++ LGIRHVG+ A+ L + Y + + A + IA + +G IA Sbjct: 514 WSRVLYGLGIRHVGSVNAQLLTQKYPTVEELATAKQSDIAG----------IYGIGAEIA 563 Query: 610 QAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 Q++ ++++ N +E L L+ + +V+ + K V TGTL + R + Sbjct: 564 QSVYQWFRIDANHVLIERLKAEGLQLAATEETTTAADVNQNLAGKTFVITGTLPSLSRDE 623 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + + G V+ +S+KTD ++VG++ GSKLEKAQ LG+ ++E L +L Sbjct: 624 AKALIQKAGGKVTNSVSKKTDYLLVGEDAGSKLEKAQALGITQLSEALLLEML 676 >gi|289581750|ref|YP_003480216.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099] gi|289531303|gb|ADD05654.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099] Length = 699 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 241/723 (33%), Positives = 374/723 (51%), Gaps = 54/723 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P E LS ++A +++ L I HD YY + P+I D YD L R + F DL+ Sbjct: 23 PPEQLSDDEAEQQVEQLRDAIREHDRRYYVENDPLIADRTYDTLFERLQVLESTF-DLSH 81 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P +GGE + V H P LS+++ D+R+F R+ +++ ++ Sbjct: 82 ---PDSPTRSVGGEPIEAFETVEHEAPMLSIDQSGEEADVREFDERV-----RREVGAVD 133 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + EPK DG + YE G A RGDG G+DV+ R I ++P+ L + P+ + V Sbjct: 134 YVCEPKFDGVSMEFVYEDGSLQRAVTRGDGREGDDVTRNARTIGSVPQKLHGDYPDFLAV 193 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 RGEV++ K+ F N E I G +P+ANPRNA +G +R+L+P + R L+ F + Sbjct: 194 RGEVFMPKDAFQEHNRERIERGEEPFANPRNATAGTIRQLDPEIVAERPLDVFYFDVLAA 253 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE+ E L++ G V + V + ++Y + M R L Y+IDG V KV Sbjct: 254 SEL-EDSHREELERFPEFGLRVTDHVEIVDDIDDAIAYRDRMLEARDDLNYEIDGTVIKV 312 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +++LG AR R+ ++KF + T + D+ +QIGRTG +TPVA LEPV++GG Sbjct: 313 DDRDAREELGRTARHDRYAFAYKFPARAEVTPIADVAVQIGRTGRVTPVALLEPVDVGGV 372 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ A+LHN + I + + +GD V V+RAG+VIP V ++I E+ D Sbjct: 373 TVSRASLHNPEEI-----------AEKTVAIGDTVRVQRAGDVIPYVEEVI--EKGADND 419 Query: 427 P---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + P CP+C S + RD G + CTGGLAC AQ ++++ S ++ Sbjct: 420 PESHYELPDHCPVCDSAIERD-----GPMAF---CTGGLACDAQLRRSIEYYASDGGLDL 471 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG++ + A + AD++ L+ + T+ + G+GD S NL I Sbjct: 472 EGLGEKSVRQLVD----AGLVESIADLYELECEELTA------LEGWGDTSAENLLSEIE 521 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R L F+ +LGI HVG AR LA+ + +++ + DD +L V Sbjct: 522 ASREPPLADFLSALGIPHVGPTTARELAREFGTFEAVREAA-------EDDPAALEGVDD 574 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 VG+ +A+ I EF+ + N AV +L VSP E E++ VFTG+L + R Sbjct: 575 VGETVAETIHEFFASEANAAAVADILAHVSPQESDLESG-GDELDGLTFVFTGSLADVTR 633 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +AQE V GA + +S TD ++VG+NPG +K E A++ V I++E +F LL + Sbjct: 634 SEAQETVEAHGANATGSVSGNTDYLVVGENPGATKREDAEENDVPIIDESEFRELLAERG 693 Query: 723 TTL 725 L Sbjct: 694 IGL 696 >gi|150025890|ref|YP_001296716.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86] gi|166215404|sp|A6H0N9|DNLJ_FLAPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149772431|emb|CAL43913.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86] Length = 666 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 235/705 (33%), Positives = 373/705 (52%), Gaps = 50/705 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ SL +E++ H+ YY P I D ++D ++ P+ D N P ++ Sbjct: 5 QKIQSLREELNLHNYNYYVLDNPTISDYDFDVKLTDLQSLEKNNPEYF---DENSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + + + H SL+ ++ EDL + RI + D + + E K DG Sbjct: 62 GGTITKNFETLKHDYRMYSLDNSYSKEDLLDWENRIQKAL---GDVPLEYICELKYDGAS 118 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I+I YE G+ V A RGDG G+DV+ I+ I +P L + PE ++RGE+ + F Sbjct: 119 ISITYENGRLVRAVTRGDGFQGDDVTNNIKTIKAVPIKLKGDFPEKFDIRGEIILPFAGF 178 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 +N ++I +G PY+NPRN ASG L+ + ++ R L+ ++ L + F + +E Sbjct: 179 EKMNQDLIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYSLIGNNLPF-QSHFEG 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K R GF V A + + + N R TLPY+ DG+V KV++ LQ +LG Sbjct: 238 LEKARLWGFKVPKQSHLAKNMNEVFDFINIWDKNRHTLPYETDGVVIKVNDLHLQDELGY 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +Q T+L I Q+GRTG +TPVA LEPV + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFKSEQVFTQLNSISYQVGRTGSITPVANLEPVQLAGTIVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ L DIR+ D V V++ GE+IPK++ + + +R ++Q ++ + CP C Sbjct: 358 QIEKL-----------DIRINDTVFVEKGGEIIPKIIGVDLQKRPSNSQKTAYITHCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 Q+++ R K G+ A H C C Q + R++H++SR A +IEGLG + + + + Sbjct: 407 QTKLER----KEGE--ANHYCPNFYGCRPQIIGRIQHYISRKAMDIEGLGGETVALLYDN 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ AD++ L S +I + S NL + +NI E +F+L Sbjct: 461 G----LVKNYADLYDL------SVEQILPLERMAQKSAENLVQGVQNSKNIPFENVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR+VG +A+ LAK+Y NI A N + L L+ V +GD IAQ++VEF+ Sbjct: 511 GIRYVGETVAKKLAKHY----------KNIDAIANANLLELVMVDEIGDKIAQSVVEFFD 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 N NI +E LK + E+N VS+++ K V +G + R + ++ + G Sbjct: 561 NQENISVLER-LKNNGIQLAISEENNTVVSNKLLGKIFVVSGVFEIYSRDELKKAIEDNG 619 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 V + +S KT+ +I G N G +KLEKA QL V I++E F LL Sbjct: 620 GKVGSSISAKTNYVIAGQNMGPAKLEKANQLKVSIISESDFSALL 664 >gi|70729275|ref|YP_259012.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf-5] gi|123734866|sp|Q4KFH1|DNLJ_PSEF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|68343574|gb|AAY91180.1| DNA ligase, NAD-dependent [Pseudomonas fluorescens Pf-5] Length = 788 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 220/627 (35%), Positives = 336/627 (53%), Gaps = 48/627 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + L E+ H+ Y+ +P I D+EYD L R A+ P+L S+ P Sbjct: 4 AETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFRELKALEAEHPELVTSDSPT---Q 60 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTL 130 ++G + +V H IP LSL + D+R+F R+ + ++ ++ Sbjct: 61 RVGSAALSAFTQVRHEIPMLSLGNAFEEVDMREFDRRVNEGLDLPAGDLFGGGAAVEYSC 120 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189 EPK+DG +++ Y+ G V A RGDG +GED+S +R + IP ++ P +EVRG Sbjct: 121 EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPATLEVRG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV++SK F LN + G K +ANPRNAA+G LR+L+ +R L F +GLG+ S Sbjct: 181 EVFMSKAGFERLNAAQLEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQVSA 240 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A L++++ G P++ +R A + YY E+ R+ LPY+IDG+V+KV+ Sbjct: 241 DIADTHIGNLERLKQWGMPISRELRLAKGIDECLDYYREIGERRNALPYEIDGVVFKVNS 300 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G + Sbjct: 301 IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLQPVKVAGVTV 360 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D + L + +GD V+++RAG+VIP+VV ++ R +A+P Sbjct: 361 SNATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVTERRPENARPV 409 Query: 429 SFPSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P CP+C S V R K K A +RC G LAC AQ + + HFVSR A + Sbjct: 410 QIPESCPVCGSHVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMD 469 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG + ++ I PAD++ L+ Q I ++ GF +VS L +I Sbjct: 470 IEGLGDKTIEQLVDEN----LIASPADLYRLKYEQ------IIDLEGFAEVSSNKLLKAI 519 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + +L RFI++LGI VG E A+ LA+ S + Q + ++ + +P Sbjct: 520 EDSKRPALARFIYALGIPDVGEETAKVLARSLGSLERVQQALPQVLTY----------LP 569 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALL 629 VG +A I F+++ N + +LL Sbjct: 570 DVGLEVAHEIHSFFEDSHNQEVIGSLL 596 Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 18/181 (9%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L + L I VG A+ LA + S Q + DWL + + + + Sbjct: 618 STTLGGMLDKLNIPSVGPGAAQKLADKFGSLQGVIEA----------DWLDMRQA--LPE 665 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH---EKNVSS--EIENKKLVFTGTLQKI 661 A+A+ EF+ NP N +A+ +++ + G H EK V + + + V TG+L+ + Sbjct: 666 KQAKAVREFFDNPANAQLAQAIEQQLQ-AFGMHWQSEKKVVAGLPLAGQTWVLTGSLELM 724 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R A++ + LGA V+ +S KT ++ G GSKL KA +LG+K+++EE F+ L ++ Sbjct: 725 SRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVAFLTEH 784 Query: 722 N 722 Sbjct: 785 G 785 >gi|194333271|ref|YP_002015131.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271] gi|254781391|sp|B4S4Y6|DNLJ_PROA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194311089|gb|ACF45484.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271] Length = 675 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 235/719 (32%), Positives = 374/719 (52%), Gaps = 67/719 (9%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A KE++ L E++ H+ YY ++P I D +D R A+ AFPDL P+ P Sbjct: 6 ALKEIARLRDELNRHNYRYYVLAQPEISDYAFDQELERLIALEKAFPDLV---TPDSPSQ 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GGE+ VTH P SL +++E++ +F R+ + ++ + F E K DG Sbjct: 63 RVGGEITKEFPTVTHRQPMRSLSNTYSLEEVEEFYARVLKLLPEEAGENPEFVAELKFDG 122 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--------IEVR 188 +++ Y G V A RG+G G+D++ IR I ++P L IEVR Sbjct: 123 VAVSLLYRDGFLVQGATRGNGVEGDDITPNIRTIGSVPLQLRGGAAMAAEQYGGREIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGR---KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGK 245 GEV++ K+DF ALN+ GR + +ANPRNA +G L+ + ++ R FV Sbjct: 183 GEVFMRKDDFAALNE-----GRPEEEQFANPRNATAGTLKLQDSAEVARRKMMFVAYYLT 237 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + + LQ++ +GF +F I + + R TL YDIDG+V K Sbjct: 238 DPQCRSMQHVQRLQRLEEMGFYTGGHYSTCRSFDEIRDFIGRWEVDRLTLQYDIDGIVLK 297 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 ++ + +LG ++SPRW I++K+ +QA T L D+ Q+GR G +TPVA LE V + G Sbjct: 298 LNNPAFWDELGATSKSPRWAIAYKYPAEQAETVLNDVVFQVGRLGTITPVAELEAVRLAG 357 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + +TLHN D I+ L D+R+GDRV+++++GE+IPKV+ ++ R D+ Sbjct: 358 TTVKRSTLHNFDEIRRL-----------DVRIGDRVVIEKSGEIIPKVIRVVPGTRREDS 406 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + PS CP+C + ++ N + C +C AQ R+ HF SR+A +I+ Sbjct: 407 SEIAIPSHCPVCGTALLHPENE------VSWYCPNSQSCPAQVKARILHFASRNAMDIKS 460 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG+ ++ + A S D++ L + ++ ++ D S NL +I K Sbjct: 461 LGESLVEQLVHNGLVADS----GDLYRL------TADEVSHLDRMADKSAMNLLKAIEKS 510 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R ER +++LGIRHVG AR LA Y S +++A + LS V +G Sbjct: 511 RTREYERVLYALGIRHVGLATARELAAAYHSI--------DLLASAALEELSC--VADIG 560 Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 +IAQ++ +F++NP + VE L L +P + V+ E K++FTGTL+ Sbjct: 561 PVIAQSVHDFFRNPDALALVEKLRTAGLRLAASAP-----KALVNRNFEGMKVIFTGTLE 615 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R A V Q G LSRKTD+++ G +PGSKL+KA +LGV+++ EE+F +L Sbjct: 616 RHSRDDAAALVAQRGGKEVKSLSRKTDLVVAGKDPGSKLQKALKLGVRVIGEEEFEAML 674 >gi|256420112|ref|YP_003120765.1| DNA ligase, NAD-dependent [Chitinophaga pinensis DSM 2588] gi|256035020|gb|ACU58564.1| DNA ligase, NAD-dependent [Chitinophaga pinensis DSM 2588] Length = 709 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 244/730 (33%), Positives = 391/730 (53%), Gaps = 77/730 (10%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I+ L +L + I Y+D YY S P++ D EYD L + A PD ++ P Sbjct: 26 TIQDLDSTLENLRRVIIYNDWRYYVQSDPVLSDYEYDQLFAWLKELETANPDKVSADSPT 85 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++ ++ + V H +P LSLE +N +DL + + D I + +EP Sbjct: 86 ---QRVALGISKNFPTVQHLVPMLSLENSYNADDLNDWDRKAREISGLTD---IEYCIEP 139 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGE 190 K DG I++ YE K A RGDG SGED++A IR I +IP I IE+RGE Sbjct: 140 KFDGASISLIYENDKLTRGATRGDGVSGEDITANIRQIRSIPLSAHFAAHGIQSIEIRGE 199 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--------YLNFFVHG 242 V I+KN F A ND+ A P ANPRNAASG LR ++P ++ + ++++ V Sbjct: 200 VLINKNTFKAYNDQRAADNLPPLANPRNAASGSLRMVDPREVAKRGLEAFLYHMSYHVMD 259 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGF--PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 GKT K LQ + LGF P ++ ++ Y E + R LPY+ID Sbjct: 260 DGKTEPQEIKTHSNTLQLLASLGFRSPAKE-MKVVKGIQAVIDYVLEFEKERDNLPYEID 318 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KV++++LQ +LG PRW +++KF +QA+++L ++ Q+GRTG +TPVA+++P Sbjct: 319 GMVIKVNDYALQDKLGMTTHHPRWAMAYKFKARQATSKLRRVEFQVGRTGSVTPVAKIDP 378 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V IGG + + +L NED +K +D+++GD VLV+RAG+VIP +V + + Sbjct: 379 VPIGGVTVGSISLFNEDVVK-----------EKDLKIGDTVLVERAGDVIPYIVKSLADL 427 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R + FP+ CP+C + + G+ V RC L C AQ +ER+ HFVS+DA Sbjct: 428 RDGTEEEIKFPTECPVCNEPLFK----PEGESV--WRCI-NLMCEAQVVERMIHFVSKDA 480 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I LG+ + F + + + DI + + ++E + GFG S+TNL Sbjct: 481 MDIRSLGESNVRKF-------YGLGLMKDIPGIYK---IDFAQLEKLEGFGKKSLTNLQS 530 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND--DWLS- 597 +I + + L R IF LGIR+VG A++LA N + H D DW Sbjct: 531 AIEQSKTQPLHRLIFGLGIRYVGETTAKTLA--------------NAVNHLLDLKDWTEE 576 Query: 598 -LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENK 650 L+ + +G +A +I +F+ +I ++ L ++G + K+ ++ ++ + Sbjct: 577 QLLALEDIGPKVAGSINQFFHLDDSIHMLQEL-----EALGLNLKSTKADHPGGGNLDGQ 631 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIM 709 +FTGTL K++R+ A+ V Q G + + +S K + +IVGD+ GSKLEKA+++ ++I+ Sbjct: 632 TFLFTGTLNKLKRNDAEAMVEQQGGKILSGVSSKLNFLIVGDDAGSKLEKAKKINTIRIL 691 Query: 710 NEEQFLFLLQ 719 +E++FL L+Q Sbjct: 692 SEDEFLNLIQ 701 >gi|32476578|ref|NP_869572.1| DNA ligase [Rhodopirellula baltica SH 1] gi|81659473|sp|Q7UKD1|DNLJ_RHOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|32447124|emb|CAD76950.1| DNA ligase [Rhodopirellula baltica SH 1] Length = 706 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 240/731 (32%), Positives = 386/731 (52%), Gaps = 86/731 (11%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L EI+ H+ YY + P I D +YD L + + PDL R P+ P +GG Sbjct: 16 VQQLVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENDHPDLRR---PDSPTQLVGG 72 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 ++ L +V H +P LS++ ++ E+L + RI + + + S+ +T+E KIDG + Sbjct: 73 DVVDQLVQVPHRVPMLSIDNTYSREELAAAMERIEKSLEGE---SVAWTMEYKIDGVAGS 129 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR-----------VLSLNIPEIIEVRG 189 IRYE G+ A RG+G G+D++ +R I +PR V N+PE++EVRG Sbjct: 130 IRYENGELTLALTRGNGQVGDDITHNVRTIRELPRSIADAALAHPEVAGGNVPEVLEVRG 189 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E+Y++ D LN G +P+ N RN +G +R L+P +R + FF HG G+ Sbjct: 190 ELYMTDADLADLNVRQTDAGHEPFKNTRNVTAGTIRLLDPKIAASRNIRFFCHGSGELVG 249 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + A LQ ++ LG P+ V + + I EM LP++IDG+V+ Sbjct: 250 VRASDHMTFLQHVQALGIPIAPDVVRFENKEDALQAIAKLELEMPD----LPFEIDGIVF 305 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD F +++LG R++SPRW+I++KF +A T L ID+Q+G+TG +TPVA L PV+I Sbjct: 306 KVDSFEQREKLGVRSKSPRWVIAYKFERYEAITTLEAIDVQVGKTGTITPVAYLTPVDIA 365 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 ++ A+LHN D I+ L D+RVGD V+V++AG++IPKVV + E+H Sbjct: 366 DTTVSRASLHNADEIERL-----------DVRVGDTVVVEKAGKIIPKVVRV---EKHAR 411 Query: 425 AQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 +P F FP+ CP C + RD + G + RCT AC AQ +RL +F SR Sbjct: 412 TKPLPKFEFPTHCPQCDEVLTRD---EGGVYI---RCTNP-ACPAQLRQRLVYFGSRTGM 464 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL-----------QRRQQTSTTKIENILGF 530 +I+GLG++ +D + E + AD++ L + R+ IE + F Sbjct: 465 DIDGLGEEVVDLLLQKE----LVENYADLYRLNVDELAELTWPRLRKGKGDEMIE--VQF 518 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL-AKYYLSYQNFAQEINNIIA 589 G + +L IN+ R L R + S+ IRH+G +A+ + AK++ N+ Sbjct: 519 GRKNAESLVAGINESRTRGLARVLSSISIRHIGPRVAKLITAKFW-----------NLDL 567 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFY------QNPRNICAVEALLKEVSPSIGRHEKNV 643 + L + +GD IA+++V+F Q ++ AV + E P + ++ Sbjct: 568 LRSAKAEDLAAIHEIGDRIAESLVKFIHSESGSQTLSDLDAVGVTMSETEP-VATPDEEA 626 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 + + K +V TGTLQ R + + + +LG ++ +S+KTD +I G+ GSKL KA+ Sbjct: 627 NLPLAGKNIVATGTLQHYTRDEIKARIEELGGRAASSVSKKTDFLIAGEKAGSKLTKAES 686 Query: 704 LGVKIMNEEQF 714 LGV++++E+ F Sbjct: 687 LGVEVLSEDDF 697 >gi|317489959|ref|ZP_07948451.1| DNA ligase [Eggerthella sp. 1_3_56FAA] gi|316910957|gb|EFV32574.1| DNA ligase [Eggerthella sp. 1_3_56FAA] Length = 708 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 241/730 (33%), Positives = 383/730 (52%), Gaps = 63/730 (8%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 EA S AR + +L +EI +H YY P I D+ +D+L R + A P+L Sbjct: 16 EATSDPAAR--IDALRREIEHHSYLYYANDAPEISDAAFDSLMRELRELEAAHPELI--- 70 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 DP+ P ++GG + V H+ SL+ ++++L +I R+ + + + Sbjct: 71 DPSSPTQRVGGYVGEQFAPVRHARRMYSLDNAMDLDELDAWIERVTEAFGRM----VPVV 126 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---------SLN 180 E KIDG+ I + YE G+ + AA RGDG +GEDV+A +R + +P L + Sbjct: 127 CELKIDGSSIALTYEGGRLMRAATRGDGTTGEDVTANMRTVKDVPLRLREGALGGLRDAD 186 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P +E+RGEVY+ K+ F ALN + G++ +ANPRNAA+G LR+ +P+ R L+ F Sbjct: 187 AP--VELRGEVYMPKSSFDALNAAAVENGKQAFANPRNAAAGSLRQKDPSITANRDLSTF 244 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 ++ + + A+GQ+E+L +R GF VN V T + ++ + R LPY+I Sbjct: 245 IYAVADERALNAEGQWELLAWLREAGFHVNPDVELCQTREEVHAFCERAVARREDLPYEI 304 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV+ F+ Q+ +G AR+PRW ++ KF ++ +T L DI +Q+GRTG LTPVA L+ Sbjct: 305 DGVVVKVNSFAQQESMGYTARAPRWAVAFKFPPEEKTTLLRDITVQVGRTGKLTPVAELD 364 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G+ + ATLHNED ++ +D+RVGD V+V++AG+VIP+V+ ++ Sbjct: 365 PVVVAGSTVARATLHNEDEVQ-----------RKDVRVGDTVIVRKAGDVIPEVLGPVLA 413 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R DA+ + P CP C S V+R+ G++ RC + C AQ LERL H+ SR Sbjct: 414 LRPADAEAWQMPRTCPSCGSPVIRE----EGEV--DFRCI-SIDCPAQALERLLHWASRG 466 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT-----STTKIENILGFGDVS 534 A +I+G+G++ + +S + AD +TL + + K + G Sbjct: 467 AMDIDGMGEEIVSRLVES----GRLSDVADYYTLDEVELSLLDMGRVNKDGEPIRLGSTV 522 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 L +I++ R R +F LGIRHVG IA LA Y S I ++ + +D Sbjct: 523 AKKLVAAIDESRTRPFARALFGLGIRHVGKTIAELLAAAYPS-------IEALMEASEED 575 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE---VSPSIGRHEKNVSSEIENKK 651 L + VG IA++ F + P N +E L ++ + + + Sbjct: 576 ---LAAIDGVGPKIARSAYLFLRTPDNAAVIERLRSHGVALADKAADEGEQLPQTLAGLT 632 Query: 652 LVFTGTL--QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 V TG+L + R +A + GA VS +S+KT ++ G+ GSK +KA LGV ++ Sbjct: 633 FVLTGSLVESGMTRDEAGAALKARGAKVSGSVSKKTSFVVAGEAAGSKYDKAVALGVPVL 692 Query: 710 NEEQFLFLLQ 719 +E L +L+ Sbjct: 693 DEAALLRILE 702 >gi|256380031|ref|YP_003103691.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827] gi|255924334|gb|ACU39845.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827] Length = 816 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 235/709 (33%), Positives = 358/709 (50%), Gaps = 42/709 (5%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR +L +E+ H YY P I D E+DAL R ++ A P LA P+ P Sbjct: 46 ARDRHRALAEEVRGHQFRYYVLDAPTISDGEFDALLRELQSLEDAHPGLAT---PDSPTQ 102 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + V H LSL+ ++ + LR + R+ K+ ++ + E K+DG Sbjct: 103 QVGGTFSTEFTAVDHLERMLSLDNAFDEDGLRAWFERV----GKEVGDAARYLCELKVDG 158 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVY 192 I +RYE+G+ V A RGDG +GEDV+ +R + +P VL+ +PE++EVRGEVY Sbjct: 159 LAINLRYERGRLVRALTRGDGRTGEDVTLNLRTLRDVPEVLTGTDEWPVPELVEVRGEVY 218 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + DFL LN +++ G P+ANPRN A+G LR+ +P +R L HG+GK + Sbjct: 219 FAVEDFLELNAKLVEAGLPPFANPRNTAAGSLRQKDPKVTASRRLRMVCHGIGKRAGFEL 278 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + Q + +R G P + TF + + R ++IDGLV KVDE L Sbjct: 279 ERQSDAYAALRAWGLPTSEHTAVVATFDEVWARVAHWGEHRHDAAHEIDGLVVKVDEVPL 338 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I+ K+ ++A+T LLDI +Q+GRTG +TP A +EPV + G+ + A Sbjct: 339 QRRLGSTSRAPRWAIAFKYPPEEATTTLLDIGVQVGRTGRVTPFAIMEPVKVAGSTVARA 398 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +K R G + +GDR+++++AG+VIP+V+ +V+ R DA+ F P Sbjct: 399 TLHNASEVK---------RKG--VLIGDRIVIRKAGDVIPEVLGPVVDVRPADAREFVMP 447 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C +R + K G + RC C AQ ERL + SR A ++E LG + Sbjct: 448 ASCPEC-GHALRPM--KEGDVDI--RCPNAEGCPAQLRERLAYLASRSALDVEVLGYEGA 502 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 SE AD+F L N G + L +++ ++ L Sbjct: 503 AALASSE----VYGNEADLFDLTAEDLLRVDLFRNQDGALVTNGAKLLENLEAAKSQPLW 558 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + +L IRHVG AR+LA + Q +A VG IA A Sbjct: 559 RVLVALSIRHVGPTAARALAVEFGGVQAILDAEEADLAAAGG----------VGPTIAAA 608 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + E+ P V + + + ++E +V TGTL R +A++ + Sbjct: 609 VREWALTPWRQEVVRRWAAAGVRMVDERDTTIRRDLEGLSIVVTGTLADFSRDEAKDSIL 668 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G +S+KT +IVGDNPGSK +KA QL V +++E F LL++ Sbjct: 669 VRGGKAVGSVSKKTAFVIVGDNPGSKADKAAQLKVPVLDEAGFRVLLER 717 >gi|87308785|ref|ZP_01090924.1| DNA ligase [Blastopirellula marina DSM 3645] gi|87288496|gb|EAQ80391.1| DNA ligase [Blastopirellula marina DSM 3645] Length = 679 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 228/709 (32%), Positives = 377/709 (53%), Gaps = 51/709 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E+ L EI HD YY +K I D EYD L R + P L P+ P + Sbjct: 5 QEEIDHLRAEIRRHDRMYYVEAKTEISDLEYDQLLNRLKHLEAENPQLV---TPDSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 IG + L +V H +P LS++ +++E+L+ + RI + ++ I + +E KIDG Sbjct: 62 IGDQPVEHLNQVAHRVPMLSIDNTYSLEELKAYGERIQKLLPEE---KIEWVVELKIDGV 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196 ++ YE G+ V RG+G G+D++ IR I IP L+ + +P ++EVRGE+Y++ + Sbjct: 119 AASLLYEAGRLVRGVTRGNGQVGDDITHNIRTIKDIPLQLAGDDVPPVLEVRGEIYMTND 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 + +N + A G Y N RN +G +R L+P R L F HG+G + ++ Sbjct: 179 ELSRINKRLAAAGEALYKNTRNVTAGSIRLLDPRICAERNLRMFTHGVGYAEGLNSESHI 238 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + L +++ G V F V++ + LP+++DGLV KV+ F +++L Sbjct: 239 DFLNELKQYGLSPTPKVEAFADFDAAVAHCETLIETLQDLPFEVDGLVLKVNRFEQRERL 298 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +SPRW+I++KF + +A T+L DI +Q+G+TG +TP+A LEPV + G ++ ++LHN Sbjct: 299 GSTTKSPRWIIAYKFEKYEAITKLNDIRVQVGKTGTITPIAELEPVELAGTTVSRSSLHN 358 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 + I+ L DIR+GD V+V++AG++IP +V + ++ER + F FP+ CP Sbjct: 359 AEQIERL-----------DIRIGDVVVVEKAGKIIPHIVRVEMHERKTELPKFEFPTQCP 407 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 IC + +V+D + G + RC C AQ ER+ +F SR+A ++EGLG + +D Sbjct: 408 ICHTTLVKD---EGGVYI---RCPNRETCPAQLKERIGYFASRNAMDVEGLGDKLVDQLV 461 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 E ++ DI+ L + ++ + G S NL SI ++ L R + Sbjct: 462 VDE----LVKSYGDIYRL------TVEELAQLERMGKKSSENLIASIAASKDRGLARLLN 511 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 L IRHVG +A+ LA+++++ IA N+ +G IIA ++ F Sbjct: 512 GLSIRHVGNRVAQLLARHFVTVDALLSASEEEIAAVNE----------IGPIIAASVHHF 561 Query: 616 YQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 + + +E L L E P + ++ + K LV TGTL K R + QE Sbjct: 562 FASEFGQQTIEDLRQLGLKLTEDVPDVVASDETGGGPLTGKTLVVTGTLVKYGRDEIQEL 621 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + G ++ +S+KTD ++ G+ GSKL KA+QLGVK+++E +F LL Sbjct: 622 IEKHGGKATSSVSKKTDYVVAGEKAGSKLAKARQLGVKVLSEAEFEVLL 670 >gi|66045063|ref|YP_234904.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae B728a] gi|75502608|sp|Q4ZVF6|DNLJ_PSEU2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|63255770|gb|AAY36866.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. syringae B728a] Length = 787 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 219/623 (35%), Positives = 338/623 (54%), Gaps = 50/623 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTLEPKIDGT 137 + +V H +P LSL + D+ +F R+ + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGGKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ P+++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + +G K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L+ ++ G PV+ ++ AN ++YY ++ R TL Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLTLTYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L + +GD V+++RAG+VIP+VV ++ R +A+ P C Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415 Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S V R + GK A +RC G LAC AQ + + H+VSR A +IEGLG Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + I PAD++ L+ Q I ++ GF ++S L +I R Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGI VG E A+ LA+ S + Q + ++ + +P VG + Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 575 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 576 AYEIRSFFEDEHNRSVIDALLGE 598 Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 24/177 (13%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + + II+ DWL + + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQA--LPE 663 Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ + N A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDSANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALL 776 >gi|312888786|ref|ZP_07748349.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603] gi|311298661|gb|EFQ75767.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603] Length = 675 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 219/712 (30%), Positives = 389/712 (54%), Gaps = 48/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S +A+ ++ +L E+ H+ YY + P I D ++D A+ FP+ A +P Sbjct: 1 MSPTEAKNKIHTLSAELKQHNYNYYVLAMPTISDFDFDKKLEELAALEKQFPEFA---EP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE+ V H P +SL ++ ++L+ F R+ +K + + E Sbjct: 58 DSPTQQVGGEITKEFETVRHKWPMMSLGNTYSEQELQDFDQRV----RKAIGDDFEYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 K DG +++ YE+GK + A RGDG G+DV+A ++ I TIP+ L N P+ E+RGE Sbjct: 114 LKFDGLSMSLTYEQGKLIRAVTRGDGIQGDDVTANVKTIHTIPKKLDEGNYPDHFEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249 V++ + F LN+E I PYANPRN ASG ++ + ++ R L+ F++ L + Sbjct: 174 VFMHRKAFDRLNNERIEQNEMPYANPRNFASGTIKLQDSREVARRPLDCFLYFLYTDKPV 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 F K ++ + ++ GF V + + + R L YDIDG+V KV+ + Sbjct: 234 F-KTHWDSIMAVKSWGFHVCEHTKLCKNIDEVFEFIASWNEKRFDLSYDIDGIVLKVNSY 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q++LG A+SPRW I++K+ +QA T L + Q+GRTG +TPVA L+PV + G + Sbjct: 293 AQQQELGFTAKSPRWAIAYKYKAQQAETVLESVSYQVGRTGSVTPVANLKPVVLAGTTVK 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN + I L D+ GD V V++ GE+IPK++ + +R PDA P + Sbjct: 353 RASLHNANEILRL-----------DLHEGDSVFVEKGGEIIPKIISVNPLKRKPDAAPIA 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 + + CP C + +VR + G+ A H C C Q + +++HF+ R A NI+GLG + Sbjct: 402 YITHCPECGTELVR----QEGE--ANHYCPNDEGCPPQIVGKMQHFIGRKAMNIDGLGDE 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ ++ F +R +DI+ L R + +++ + FG+ S+ N+ + I K + + Sbjct: 456 TIETLYQK---GF-LRHISDIYDLHLR----SDELKQLGRFGEKSINNMMEGIEKSKQMP 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 E+ +F +GIR+VG +AR L Y+ + I+N++ N ++ L V +G IA Sbjct: 508 FEKVLFGMGIRYVGETVARKLVAYF-------KNIDNLMKANIEE---LTTVDEIGTRIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQ 667 +++V+++ +P ++ VE L + + ++ V S ++ K + +G +K R + + Sbjct: 558 ESLVDYWSSPEHVQQVEKLKAQGLQFVSNEKELVLASDKLSGKTFIISGVFEKYSRDELK 617 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + + Q G + + +S K + ++ GDN G +KLEKA +L + I+++++ L +L Sbjct: 618 DIIEQNGGKILSSISAKLNYLVAGDNMGPAKLEKANKLNIPIISDDELLTML 669 >gi|322437173|ref|YP_004219385.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9] gi|321164900|gb|ADW70605.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9] Length = 704 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 243/740 (32%), Positives = 377/740 (50%), Gaps = 77/740 (10%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+E+ KEL +++ +H+ YY P + D +YD+L R A+ P++ S+ P Sbjct: 5 SVEEQVKEL---REQLEHHEHLYYVMDTPELTDGQYDSLMNRLKALEAEHPEMVTSDSPT 61 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++GG+ KV HS P LSL+ +N EDLR + R+ + ++ +T E Sbjct: 62 ---QRVGGKPADGFQKVKHSRPMLSLDNAYNEEDLRAWDVRVRGGLPGTE--AVAYTCEL 116 Query: 133 KIDGTMITIRYEKGKFVYAAL-----RGDGHSGEDVSACIRAIPTIPRVLSL------NI 181 K+DG + + Y + L RGDG +GEDV++ +R I +IP +S + Sbjct: 117 KLDGLSLALHYRGASHDGSQLERGLTRGDGTTGEDVTSNVRTIRSIPLTISAAKLKAAGL 176 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240 P EVRGE + FL +N+E A G ANPRNAA+G +R L P + R L+F+ Sbjct: 177 PMEFEVRGECVMPHAAFLKMNEEFEAAGLAAKANPRNAAAGTIRTLEPNIVAQRRLDFYA 236 Query: 241 HGL--GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + L + E+ Q E L + G VN V ++ G+ + + +R +L Y+ Sbjct: 237 YFLLQAEGGEMLLGSQSEALTALGKAGMRVNPQVATVDSIDGVWEFIQRCEPLRDSLGYE 296 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KVD+ + Q++LG ++PRW I++KFA + T+L + Q+GRTG +TPVA+L Sbjct: 297 IDGIVIKVDKAAQQRRLGFTGKAPRWAIAYKFAARAGVTKLEGVAFQVGRTGKVTPVAQL 356 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV IGG + ATLHN D I L +R+GD V V+R G+VIPK+ +++ Sbjct: 357 SPVFIGGTTVKRATLHNPDEIVRL-----------GVRIGDFVSVERGGDVIPKITGVVL 405 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 E+ Q FP CP C S +V++ + V A +C A+ E L HF +R Sbjct: 406 -EKPRGTQEIVFPECCPACGSALVKEEGEVDWRCVNA-------SCPARLREELIHFGAR 457 Query: 479 DAFNIEGLGKQQLDFFF-------------KSEDPA-FSIRIP-----ADIFTLQRRQQT 519 NIEGLG + K E A ++R P AD++ L + Q Sbjct: 458 GVMNIEGLGDAMVGQLLGQVEDAVDETDIEKEEAAAPVTVREPLVRSIADLYRLTKEQLV 517 Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579 ++ GD S L D I K + L R + LGIRHVG A LA ++ + Sbjct: 518 GLERV------GDKSAQALLDEIAKSKKAPLSRVLLGLGIRHVGQRTAELLASHFGA--- 568 Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639 I ++ D+ L++V +G I+A + +F+ +N V+ LL E+ + Sbjct: 569 ----IEPLMGATQDE---LVQVNEIGPIVAATVHDFFAQEQNQALVKELL-EIGLEMKAE 620 Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 ++ ++ +E V TGTL + R A+E + G VS +S+KTD ++ G++ GSKLE Sbjct: 621 KRVTTTVLEGLTFVLTGTLPTLTREIAKEKIEAAGGRVSGSVSKKTDYVVAGEDAGSKLE 680 Query: 700 KAQQLGVKIMNEEQFLFLLQ 719 KA+ LGVK+++E L LL+ Sbjct: 681 KAESLGVKVVDEAGLLELLE 700 >gi|225075650|ref|ZP_03718849.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens NRL30031/H210] gi|224953072|gb|EEG34281.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens NRL30031/H210] Length = 822 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 261/817 (31%), Positives = 406/817 (49%), Gaps = 170/817 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L P+ P ++GGE +V H IP Sbjct: 22 YYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQRVGGEPLAGFNEVRHEIP 78 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D T +Y F ++ + + +EPK DG I++ Y G Sbjct: 79 MLSLTNAFSPQDENGVFDHTEMYAFDERVRGGLNGEKPEYVIEPKFDGLAISLLYRDGVL 138 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 AA RGDG +GEDV+ ++ + IP R+ NIPE+IE+RGEV + K DF ALN + Sbjct: 139 TQAATRGDGTTGEDVTHNVKTVSNIPLRLHGENIPELIEIRGEVLMLKADFAALNKKQAE 198 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 199 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGFIAEEHLQELNYCKEL 257 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + +G F I +++Y +M+ R TLPY+IDG+V KV+ + Q++LG +R+ Sbjct: 258 GFSLPDG--NFGCFKNIDEVLAFYEQMQQKRPTLPYEIDGMVVKVNSLAQQEKLGFISRA 315 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D + Sbjct: 316 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 375 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-------------------- 421 +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 376 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETNISVSDGLQDDLFAE 424 Query: 422 -------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+++ L H Sbjct: 425 TPSETRSEPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRVQGLIH 478 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQT---------- 519 F SR A +I+GLG++Q++ + +R AD++ TLQ+ ++T Sbjct: 479 FASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKASINEEE 534 Query: 520 -STTKIENILG-FGDVSVT------------NLYDSINKRRNISLERFIFSLGIRH---- 561 S ++IE+ G G+ + N+ I + L RF+F+LGIRH Sbjct: 535 PSNSEIEDFEGETGNTLLAKNNKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGER 594 Query: 562 ----------------------------VGAEIARSLAKYY----------------LSY 577 +G +ARS+A ++ ++ Sbjct: 595 TAKTLAQAFGTLEHVRHAPEPILACLPDIGTVVARSIAHFFAQEAQQAMIDELLAVGIAP 654 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE---------------------FY 616 Q+ A I + W++ + + + A A+ E + Sbjct: 655 QSQAVTIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSIEGLQTDKALPADWQTWR 714 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQEYVT 671 P+N +E + + ++ + + S+ I K V TGTL ++R +AQ + Sbjct: 715 SKPQNAALLENMKTFFAQTLSKLQDETISDGINEAIAGKTFVLTGTLPTLKRDQAQAMIE 774 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 G VS +S+KTD ++ G+ GSKLEKAQ LGV + Sbjct: 775 AAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQALGVAV 811 >gi|237709923|ref|ZP_04540404.1| DNA ligase [Bacteroides sp. 9_1_42FAA] gi|229456016|gb|EEO61737.1| DNA ligase [Bacteroides sp. 9_1_42FAA] Length = 665 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 242/706 (34%), Positives = 376/706 (53%), Gaps = 54/706 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +E+ H+ YY + P I D E+D L R + P+ D N P ++G Sbjct: 7 IDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRVGS 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMI 139 ++N + +V H P LSL ++ ++ +F R+ KK N F E K DGT I Sbjct: 64 DINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRV-----KKSLNEDFEICCEMKYDGTSI 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198 ++ YE GK + A RGDG G+DV+ ++ I +IP VL PE E+RGE+ + F Sbjct: 119 SLTYENGKLLRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVVF 178 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257 LN E A +ANPRNAASG L+ N + +R L+ +++ L + G YE Sbjct: 179 EELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L++ GF +++ R+ T + + R LP DG+V KV+ Q+ LG Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+GL D+ +GD V V++ GE+IPK+V + N R F ++CP C Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR G+ AA+ CT AC Q +++HF+SR A +I+GLG + +D F++ Sbjct: 407 GSKLVR----YEGE--AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 IR AD++TL+ T+ I N+ G+ S N+ I + + + ER +F+L Sbjct: 461 G----LIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +AK + S A + DD LI V +G+ IAQ+I+ ++ Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA-------SLDD---LIHVDEIGEKIAQSILLYFA 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 NP+N +E L+ + E++ S ++ K +V +G R + +E + + G Sbjct: 561 NPKNRDIIER-LRVAGVRLEADEEDTSGHTDKLAGKSIVISGVFAHHSRDEYKELIEKHG 619 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +S KT ++ GDN G SKLEKAQ+LGV I++EE+FL +++ Sbjct: 620 GKNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665 >gi|312880304|ref|ZP_07740104.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260] gi|310783595|gb|EFQ23993.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260] Length = 696 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 241/716 (33%), Positives = 374/716 (52%), Gaps = 53/716 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A + L ++I HD YY P++ D YDAL R ++ A PDLA DP+ P Sbjct: 11 DAAASRIRELTEQIRLHDHRYYVLDDPVLPDDAYDALLRELRSLERAHPDLA---DPDSP 67 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG KVTH +P SL+ + E+L F+ R+ + +++ + EPKI Sbjct: 68 TGRVGGSPKEEFRKVTHPVPLQSLDNALDREELAAFLQRLRQGLGREE---VPVVCEPKI 124 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +T+RY G+FV A RGDG GEDV+ +R + ++P L+L +P +EVRGEV+++ Sbjct: 125 DGLAVTLRYRDGRFVQGATRGDGRVGEDVTENLRTLRSLPLRLALPVPGELEVRGEVFMA 184 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 + DF LN G P+ANPRNAA+G LR+L+P R L F++ + A+G Sbjct: 185 RGDFGELNVRREEEGEPPFANPRNAAAGALRQLDPRITAQRRLRLFLY---HVVDPLARG 241 Query: 254 ---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q +L+ +R +GFP + + I ++ + R DG+V K+D+ + Sbjct: 242 ITTQGALLEWLREVGFPTQGEWARCTSPGEIGTFLDRWDQKRHEHLAQTDGVVVKLDDLA 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG R+PRW I+ K+ ++ TR+ DI+I +GRTG+LTP A LEPV + G ++ Sbjct: 302 ARETLGSTNRAPRWAIAFKYPPEERPTRVRDIEISVGRTGVLTPTAVLEPVRLSGTVVQR 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D + +D+R+GDRV V++AGE+IP+VV + R PF Sbjct: 362 ASLHNPDEV-----------ARKDVRIGDRVFVRKAGEIIPEVVRVDREARDGSESPFVP 410 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP C S VR G++ A RC +C AQ E L+HF SR +I GLG++ Sbjct: 411 PSACPACGSEAVR----LEGEV--ALRCP-NRSCPAQLKEGLRHFASRGGLDIRGLGEKL 463 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L+ ++ D +R AD+F + + ++ G S NL +++ ++ L Sbjct: 464 LE---QAVDVGL-VRDAADLFLVTEDAWAALDRM------GAASARNLKEALEVAKDRPL 513 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + +F+LGIR+VG +A LA + S + +A V VG ++A Sbjct: 514 RKLLFALGIRNVGDRLAADLAGRFGSLEALEACSEEALAA----------VEGVGPVVAA 563 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--ENKKLVFTGTLQKIQRHKAQE 668 A+ F+++ N + L + E+ + KLVFTG L+ R AQE Sbjct: 564 AVRAFFRDGHNRETLRRLREAGVRMEDPQEEKAPGGLPWAGWKLVFTGELESCPREAAQE 623 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 GA +SRKT ++ G GSKLEKA++LG+ + +E +FL LL++ T Sbjct: 624 AARARGAQTGESVSRKTTAVVAGARAGSKLEKARKLGIPVWDEARFLELLREAEET 679 >gi|145593768|ref|YP_001158065.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440] gi|190359283|sp|A4X487|DNLJ_SALTO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145303105|gb|ABP53687.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440] Length = 711 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 237/712 (33%), Positives = 367/712 (51%), Gaps = 51/712 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR+ ++L +E++ H YY P I D+ +D R A+ FP L P+ P Sbjct: 26 ARERHATLSRELTEHQYRYYVLDAPTISDAAFDEQLRELAALEAEFPAL---RTPDSPTQ 82 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + V H+ +SL+ ++ E+L + R+ ++ + + E K+DG Sbjct: 83 RVGGAFSTDFTPVAHAERMMSLDNAFSDEELAAWAERV----ERDAGGPVPYLCELKVDG 138 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGEV 191 I + YE+G+ V AA RGDG +GEDV+A +R+I +P L+ + IP+++EVRGE+ Sbjct: 139 LAINLTYERGRLVRAATRGDGRTGEDVTANVRSIQDVPGELTPSAEFPEIPDLLEVRGEI 198 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y F LN ++ GR P+ANPRNAA+G LR+ +P +R L VHG G Sbjct: 199 YFPVAGFADLNAGLVEQGRAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGFGARRGWA 258 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E +R G P ++ R G+ Y + R + ++IDG+V KVD + Sbjct: 259 PSTQSESYAALRTWGLPTSDRWRVVPGLAGVAEYVAHYAAHRHDVEHEIDGVVVKVDPVA 318 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I+ K+ ++ +TRLLDID+ +GRTG +TP A LEPV + G+ + Sbjct: 319 IQGRLGSTSRAPRWAIAFKYPPEEVNTRLLDIDVNVGRTGRVTPFAVLEPVRVAGSTVAL 378 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN + +V R G + +GD V++++AG+VIP+V+ +V R P+A+ F Sbjct: 379 ATLHN---------AREVERKG--VLIGDTVVIRKAGDVIPEVLGPVVELRPPEARSFVM 427 Query: 431 PSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 PS CP C + L P K G + RC +C AQ ER+ H R AF+IE LG + Sbjct: 428 PSRCPCCGT----PLAPAKEGDIDI--RCPNTRSCPAQLRERVFHLAGRGAFDIEVLGYK 481 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +E I D+FTL Q + N G + L +++ + Sbjct: 482 GAAALLDAE----IITDEGDLFTLDTAQLARSPFFVNKDGSLGSNAVKLLENLTVAKERE 537 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG A++LA+++ S + Q L V VG IA Sbjct: 538 LWRVLVALSIRHVGPTAAQALARHFRSVEAIDQAGEE----------ELSAVDGVGPTIA 587 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666 ++ E++ + E + K + E+ V+ +E +V TGTL R +A Sbjct: 588 ASVREWFAVAWH---REVVRKWAEAGVRMAEEAVAQGPRPLEGVTVVVTGTLAGYSRDQA 644 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + G V+ +S+KT ++VGDNPG+K EKA L V +++EE F LL Sbjct: 645 AEAIQSRGGKVTGSVSKKTAFVVVGDNPGTKAEKAAGLKVPVLDEEGFQVLL 696 >gi|325203753|gb|ADY99206.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240355] Length = 841 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 266/825 (32%), Positives = 405/825 (49%), Gaps = 169/825 (20%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV + K DF LN Sbjct: 161 VQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEVRGEVLMQKADFATLNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQEL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y +M+ R LPY+IDG+V KV+ + Q +LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQHELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D Sbjct: 338 PRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 393 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 394 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMRETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAETPSANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TT 522 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++ + T Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKEAADKTV 556 Query: 523 KIENILGFGDVSV--------------TNLYDSINKRRNISLERFIFSLGIRHV------ 562 + + SV N+ I + L RF+F+LGIRHV Sbjct: 557 AESDQMPSEGSSVGASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616 Query: 563 --------------------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 G +ARS+A ++ + A I+ ++A Sbjct: 617 TLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQA 675 Query: 597 SLIRVPL-----------------VGDIIAQAIVEF-----------------YQNPRNI 622 + +P + + AQA+ E +Q R+ Sbjct: 676 QAVSLPAAQYAEPQRWIARLPGFKISENKAQALWELAGKSIEGLQTDKSLPADWQAWRSE 735 Query: 623 CAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ALL+ + PS + ++ + K V TGTL ++R +AQ + Sbjct: 736 PQNAALLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAA 795 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 796 GGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 840 >gi|294506892|ref|YP_003570950.1| NAD-dependent DNA ligase [Salinibacter ruber M8] gi|294343220|emb|CBH23998.1| NAD-dependent DNA ligase [Salinibacter ruber M8] Length = 691 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 225/704 (31%), Positives = 384/704 (54%), Gaps = 51/704 (7%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 + +H+ YY P++ D+EYD L ++ + +P L + P+ P +++GG + L Sbjct: 32 LRHHNYRYYVLDAPVVSDAEYDRLFQQLQTLEAEYPGL---QTPDSPTHQVGGPVRDELG 88 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 VTH P LSL+ ++ +++R F + ++ ++ +T EPK DG + + YE G+ Sbjct: 89 TVTHPAPMLSLKAVYEEDEVRNFAETCRKELGRE---TVTYTAEPKFDGLAVELIYEDGR 145 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALNDE 204 V A RGDG +GE+++A ++ I +P R + +P+ + VRGE Y+ K++F A N Sbjct: 146 LVQGATRGDGETGEEITANVKTIKGVPLRLRDDARPVPDRLVVRGEAYMRKDEFNAFNRR 205 Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262 G+K +ANPRNAA+G LR+L+ ++IT R L + + + E+L+ + Sbjct: 206 REEEGKKVFANPRNAAAGSLRQLD-SNITARRPLRIYFYEIAPVDGRDFATHAEVLEALP 264 Query: 263 CLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 G V + +R+ + ++++ + R LPY+IDGLV KV++F + LG R R Sbjct: 265 EWGLRVCEDHIRRCDGIDAALAHHAALVDRRDDLPYEIDGLVIKVNDFDGHETLGVRDRD 324 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++KF ++A+T + D+ +Q+GRTG +TPVA L PV +GG +T A+LHN++ I Sbjct: 325 PRWAAAYKFPPRRATTSIEDLFVQVGRTGRITPVAVLAPVEVGGVEVTRASLHNQNEID- 383 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GD VL++RAG+VIP+VV +I +ER P+ P CP+C S V Sbjct: 384 ----------RKDIRIGDTVLIERAGDVIPQVVKVIEDERDGTEAPYHIPDACPVCGSEV 433 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 V + K CTGG+ C AQ ERLKH+ SR+A +IEGLG ++ + A Sbjct: 434 VLSDDKKQAF------CTGGMTCPAQFRERLKHYASREATDIEGLGDKRAEQLID----A 483 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I+ +D++ L++ + + + D S NL D I L+RF+++LGI Sbjct: 484 GLIQTISDLYELEK------ADLLQLERYADKSAQNLIDEIEASLEQDLDRFLYALGIPL 537 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG+ AR LA+++ + + A + D +L + +G +A +I F+ + N Sbjct: 538 VGSATARLLAQHF----------DTLDALVDADEDALTTIDDIGPEVAHSIATFFADDAN 587 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 ++ +++ ++ ++ + VFTG+L+ R Q +V Q GA ++ + Sbjct: 588 RGVIDE-MRDAGLTLTNPYAEDAAPLAGLTFVFTGSLEDWTRSAVQRFVEQHGANATSSV 646 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 S TD ++ G GSK + A+ LGV +++E+ F LL++ + + Sbjct: 647 SGNTDYVVAGPGAGSKRDDAEALGVPVLDEDDFHALLRERDIEM 690 >gi|212693183|ref|ZP_03301311.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855] gi|212664288|gb|EEB24860.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855] Length = 665 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 242/706 (34%), Positives = 376/706 (53%), Gaps = 54/706 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +E+ H+ YY + P I D E+D L R + P+ D N P ++G Sbjct: 7 IDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRVGS 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMI 139 ++N + +V H P LSL ++ ++ +F R+ KK N F E K DGT I Sbjct: 64 DINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRV-----KKSLNEDFEICCEMKYDGTSI 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198 ++ YE GK + A RGDG G+DV+ ++ I +IP VL PE E+RGE+ + F Sbjct: 119 SLTYENGKLLRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVVF 178 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257 LN E A +ANPRNAASG L+ N + +R L+ +++ L + G YE Sbjct: 179 EELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L++ GF +++ R+ T + + R LP DG+V KV+ Q+ LG Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+GL D+ +GD V V++ GE+IPK+V + N R F ++CP C Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR G+ AA+ CT AC Q +++HF+SR A +I+GLG + +D F++ Sbjct: 407 GSKLVR----YEGE--AAYYCTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 IR AD++TL+ T+ I N+ G+ S N+ I + + + ER +F+L Sbjct: 461 G----LIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +AK + S A + DD LI V +G+ IAQ+I+ ++ Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADA-------SLDD---LIHVDEIGEKIAQSILLYFA 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 NP+N +E L+ + E++ S ++ K +V +G R + +E + + G Sbjct: 561 NPKNRDIIER-LRVAGVRLEADEEDTSGHTDKLAGKSVVISGVFAHHSRDEYKELIEKHG 619 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +S KT ++ GDN G SKLEKAQ+LGV I++EE+FL +++ Sbjct: 620 GKNVGSISSKTSFVLAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665 >gi|67809897|gb|AAY81980.1| NAD-dependent DNA ligase [Wolbachia pipientis] Length = 552 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 238/584 (40%), Positives = 346/584 (59%), Gaps = 49/584 (8%) Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 KV H P LSLE ++ + + KF+++I RF ++ I EPKIDG + YE G+ Sbjct: 11 KVEHQEPMLSLENAYDEQGVEKFLSKIKRFLI---EDKIEILCEPKIDGLSFSAIYEDGR 67 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 FV AA RGDG GEDV+ + I P+ L + +EVRGE+YIS +DFL LN+ Sbjct: 68 FVKAATRGDGFVGEDVTHNVATIKGFPKFLQ-GVQGRLEVRGEIYISNSDFLKLNE---- 122 Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266 +ANPRNAA+G L++L+ +R L +F + L +E K Q E+L K+ LGF Sbjct: 123 --NDEFANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAE---KSQSEVLNKLEALGF 177 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRST-LPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 VN ++ G++ +Y KSI S L YDIDG+VYKV++ LQ +LG ++PR Sbjct: 178 CVNEHQSLTSSLDGMLKFYT--KSILSLYLDYDIDGIVYKVNDLVLQNRLGNTHKAPRSA 235 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 +++KF+ A T+L I IQ+GRTG+LTPVA L PVNIGG L++ A+LHN+D IK Sbjct: 236 LAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIK----- 290 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +DIR GD V +KRAG+VIP++V++ + R P+ F FP CP C S+ VR + Sbjct: 291 ------RKDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSK-VRQV 343 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 + AA RC AC AQ +E+LKHFVS+DAF+I GLG +Q++FF+ D + Sbjct: 344 EGE-----AAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFY---DLGLIKQ 395 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 IP DIFTL+ R +E G+G S+ +L ++I RR I+L+RFIFSLGIR +G Sbjct: 396 IP-DIFTLEER--LDEFNLEEQSGWGKKSIAHLLNAIQSRRVITLDRFIFSLGIRFIGQV 452 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A LA YY+SY N+ N++I ++D+ L+ + +G +A+++ F+ NI + Sbjct: 453 AAELLADYYVSYDNW---YNSMIELSSDN-TELVGIDGIGKKVAESLESFFSKEHNIKML 508 Query: 626 EALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 L ++ P + +S + NK +VFTG L + R +A+ Sbjct: 509 NDLTACLQILPV---SSNSSNSVLNNKIIVFTGKLLAMSRGEAK 549 >gi|325955534|ref|YP_004239194.1| DNA ligase [Weeksella virosa DSM 16922] gi|323438152|gb|ADX68616.1| DNA ligase [Weeksella virosa DSM 16922] Length = 663 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 223/698 (31%), Positives = 373/698 (53%), Gaps = 48/698 (6%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 +L +E+ H+ YY +P I D E+D + + P+ + DPN P ++GG + Sbjct: 9 ALREELHQHNYRYYVLDQPSISDFEFDLKLKELQKLEKEHPEFS---DPNSPTVRVGGSI 65 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + ++H SL+ ++IE+L+++I R+Y K+ + F E K DG I+I Sbjct: 66 TKNFPTISHEYQMYSLDNSYSIEELKQWIARVY-----KNIENPTFVCELKYDGASISIL 120 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 YE GK A RGDG G+D++A ++ I ++P +L + P +RGE+ I F +N Sbjct: 121 YENGKLTQAVTRGDGTQGDDITANVKTITSLPLILRGSYPTKFYMRGEITIPIKTFDKIN 180 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 ++ G YANPRN ASG L+ + ++ R L F + + F + Q+ M++K Sbjct: 181 EQRKDEGLLLYANPRNTASGSLKLQDSAEVAKRGLQCFPYAFVGENLGFDE-QWTMIEKA 239 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 + LGF + + I++Y + +S R LP++IDG+V KV+ F+ Q++LG ++S Sbjct: 240 KELGFKIPETASLCSNLEEIIAYITKWESKRHQLPFEIDGIVIKVNSFAQQEELGYTSKS 299 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW +++KF + A T L I Q+GRTG +TPVA L PV + G +I A+LHNED IK Sbjct: 300 PRWAVAYKFKAEAAETTLESITYQVGRTGAITPVANLHPVQLAGTIIRRASLHNEDIIKK 359 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 L DIR+GD+V V++ GE+IPK+V + + R + + CP C +++ Sbjct: 360 L-----------DIRIGDQVYVEKGGEIIPKIVGVNTDVRPAGTEEIRYIENCPSCGTKL 408 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 VR G+ A H C C Q + RL+HFVSR A +IE +G + + A Sbjct: 409 VR------GEGEALHYCLNEDGCPPQIIGRLEHFVSRKAMDIESIGSETAILLHE----A 458 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + AD +TL + I + + S N+ D+I + S ER ++ LGIRH Sbjct: 459 GLVNNVADFYTLTKEM------ILPLERMAEKSAQNIIDAIENSKQQSFERLLYGLGIRH 512 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG +A+ LA ++ + ++ + + LI V +G+ IAQ+I+ ++ + Sbjct: 513 VGNTVAKKLALHFGTMESLKKAT----------YDELILVEDIGEKIAQSIIAYFDKEEH 562 Query: 622 ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 + ++ L +S +G+ + +S ++ K +FTG+L K R +AQ+ V + G + Sbjct: 563 LELIDRLKTYGLSLELGKEQTPISDKLTGKTFLFTGSLTKFTRAEAQKLVEEHGGKNLSA 622 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S+ D +I G+ GSKL+KA++L + ++ E +FL L+ Sbjct: 623 VSKNLDYLIAGEKAGSKLKKAEELKITVLTEGEFLELI 660 >gi|146301217|ref|YP_001195808.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101] gi|190359257|sp|A5FE87|DNLJ_FLAJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146155635|gb|ABQ06489.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101] Length = 668 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 226/710 (31%), Positives = 376/710 (52%), Gaps = 54/710 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + +L +E++ H+ YY I D ++D + + + P+ D + P + Sbjct: 4 QETIQTLREELNQHNYNYYVLDNATISDYDFDIKLKELQDLENKHPEFF---DEDSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + + + H SL+ ++ EDL + RI R + ++ +T E K DG Sbjct: 61 VGGTVTKNFKTIAHQYRMYSLDNSYSKEDLIDWENRIQRVL---GNVNLQYTCELKYDGA 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I+I Y+ GK V A RGDG G++V+ I+ I +IP L + PE ++RGE+ + Sbjct: 118 SISISYQNGKLVQALTRGDGFQGDEVTNNIKTIKSIPLKLKGDYPERFDIRGEIILPFAG 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F +N E+I +G PY+NPRN ASG L+ + ++ R L ++ + + F K Q+E Sbjct: 178 FEKMNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLECLLYTVAGNNLPF-KTQFE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ R GF V N + N+ + + + R LPY+ DG+V KV+ Q++LG Sbjct: 237 GLESARKWGFKVPNEAKLVNSMQEVFDFIDYWDVHRHKLPYETDGVVIKVNSIHSQEELG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW I++KF +QAST+L I Q+GRTG +TPVA LEPV + G ++ A+LHN Sbjct: 297 YTAKSPRWAIAYKFKSEQASTKLKSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNA 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L DIR+ D V V++ GE+IPK++ + + +R +++ + + CP Sbjct: 357 DQIEKL-----------DIRINDTVFVEKGGEIIPKIIAVDLEKRPENSEVTQYITHCPE 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C++ +VR+ A H C C Q + R++H++SR A +IEGLG + + FK Sbjct: 406 CETELVRNAGE------ANHYCPNFYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFK 459 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERF 553 + + AD++ L K+E+IL S NL + + K + I E Sbjct: 460 NG----LVHNYADLYEL---------KVEDILHLERMAQKSAENLVNGVEKSKEIPFESV 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VG +A+ LAK+Y NI A + + LI V +G+ IA++++ Sbjct: 507 LFALGIRFVGETVAKKLAKHY----------KNIDALSQASLMDLILVDEIGERIARSVI 556 Query: 614 EFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 EF++N N +E L K ++ R N + + K V +G + R + ++ + Sbjct: 557 EFFENEENKIIIERLKKYGIQFETVERVNPNATEKFIGKTFVVSGVFSQFSRDELKKAIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 G V + +S KTD ++ GDN G +KLEKA +L + I++E++F+ L + Sbjct: 617 DNGGKVGSSISAKTDFVVAGDNMGPAKLEKATKLNIPILSEDEFITKLNE 666 >gi|257053690|ref|YP_003131523.1| NAD-dependent DNA ligase LigA [Halorhabdus utahensis DSM 12940] gi|256692453|gb|ACV12790.1| DNA ligase, NAD-dependent [Halorhabdus utahensis DSM 12940] Length = 693 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 249/715 (34%), Positives = 377/715 (52%), Gaps = 55/715 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++AL E A ++ L + I YHD YY + P+I D YDAL R + F L R Sbjct: 22 VDALDAESAHEQAEQLREAIRYHDHQYYVENDPVIGDRTYDALFARLQDLEDGF-GLDRE 80 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSI 126 N P ++GGE L V H P S+++ + ++R+F R+ R D + Sbjct: 81 ---NSPTQRVGGEPLDKLASVEHVAPMQSIDQGGEVTEVREFDERVARGMGDAGFDPDER 137 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + EPK DG + I YE G + AA RGDG GEDV+ +R IP++P L + P+ + Sbjct: 138 TYFCEPKFDGLSVEIVYEDGVYQRAATRGDGEVGEDVTENVRTIPSVPGRLRGDYPDTLA 197 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244 VRGEVYI + F A N E I G P+ANPRNAA+G LR+L+P+ IT R L F G+ Sbjct: 198 VRGEVYIPTDAFQAYNRERIERGDDPFANPRNAAAGTLRQLDPS-ITAERPLAIFFFGVL 256 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 S F + E+ +++ G V + + ++ + Y + + R LP++IDG+V Sbjct: 257 DASVEFEQNS-EVYERLPEWGLRVTDLAEEVDSIEDAIDYRDRLLDERDDLPFEIDGVVI 315 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+++ + LG AR+PRW ++KF + T + D+ +Q+GRTG LTPVA ++PV +G Sbjct: 316 KLNDRAACDALGSTARAPRWAFAYKFPARTERTTIRDVVVQVGRTGRLTPVALMDPVEVG 375 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++ A+LHN I+ L + VGD V V+RAG+VIP+V +++ + D Sbjct: 376 GVMVSRASLHNPAEIERL-----------GVDVGDEVRVQRAGDVIPEVAEVL--DAASD 422 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 F FP CP+C S V RD G L CTGGLAC AQ + H+ SR +IE Sbjct: 423 GT-FDFPESCPVCDSPVERD-----GPLAF---CTGGLACPAQLERAIVHYASRAGLDIE 473 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++++ A + AD++ L + TS + G+G SV NL + + Sbjct: 474 GLGEERVQQLLD----AGLVEELADLYELGQLDLTS------LEGWGMQSVANLQEELEA 523 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R L+ F+ +L + +GA A +LA+ + +++ A + D L V + Sbjct: 524 SREPPLDDFLAALNVPSLGAATATALAREFGTFE----------AVMDADREQLQAVDDI 573 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G +A I EF++ RN A+E LL V P +E E++ VFTGTL R Sbjct: 574 GPKVAAEIREFFETERNREAIERLLDHVDPQP--YEVEGGDELDGLTFVFTGTLSNYTRS 631 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLL 718 +AQE V G ++ +S TD ++VG+NPG K + A V+I++E++F LL Sbjct: 632 EAQELVEVHGGSATSSVSGNTDYLVVGENPGQRKRDDADANDVQILDEDEFEELL 686 >gi|159036755|ref|YP_001536008.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205] gi|190359280|sp|A8M5E3|DNLJ_SALAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157915590|gb|ABV97017.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205] Length = 710 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 237/712 (33%), Positives = 365/712 (51%), Gaps = 51/712 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR+ ++L E++ H YY P I D+E+D R A+ FP L P+ P Sbjct: 25 ARERHATLSLELTEHQYRYYVLDAPTISDAEFDERLRELAALEAEFPAL---RTPDSPTQ 81 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + V H+ +SL+ + E+L + R+ ++ + + E K+DG Sbjct: 82 RVGGAFSTDFTPVAHAERMMSLDNAFTDEELDAWAERV----ERDAGGPVPYLCELKVDG 137 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGEV 191 I + YE+G+ V AA RGDG +GEDV+A +R+I +P L+ + IP ++EVRGE+ Sbjct: 138 LAINLTYERGRLVRAATRGDGRTGEDVTANVRSIRDVPAELAPSAEFPEIPGLLEVRGEI 197 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y F LN ++ G+ P+ANPRNAA+G LR+ +P +R L VHG+G Sbjct: 198 YFPIAGFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITASRPLRLVVHGIGARQGWQ 257 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E +R G P ++ R G+ Y + R + ++IDG+V KVD S Sbjct: 258 PSTQSESYAALRAWGLPTSDRWRVVPDLAGVAEYIAHYATHRHDVEHEIDGVVVKVDPVS 317 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I+ K+ ++ +TRLLDID+ +GRTG +TP A LEPV + G+ + Sbjct: 318 IQGRLGSTSRAPRWAIAFKYPPEEVNTRLLDIDVNVGRTGRVTPFAVLEPVRVAGSTVAL 377 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN + +V R G + +GD V++++AG+VIP+V+ +V R PDA+ F Sbjct: 378 ATLHN---------AREVRRKG--VLIGDTVVIRKAGDVIPEVLGPVVELRPPDARSFVM 426 Query: 431 PSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 PS CP C + L P K G + RC +C AQ ER+ H R AF+IE LG + Sbjct: 427 PSTCPCCGT----PLAPAKEGDVDI--RCPNTRSCPAQLRERVFHLAGRGAFDIEVLGYK 480 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ I D+F L Q T + N G + L D++ + Sbjct: 481 GAAALLDAQ----IITDEGDLFALDAAQLTRSPFFVNKDGSLGSNAVKLLDNLTVAKERE 536 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG A++LA+++ S + Q L V VG IA Sbjct: 537 LWRVLVALSIRHVGPTAAQALARHFRSIEAIDQAGEE----------ELSAVDGVGPTIA 586 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666 ++ E++ + E + K + E+ V +E +V TGTL R +A Sbjct: 587 ASVREWFAVAWH---REVVRKWAEAGVRMTEEAVDEGPRPLEGMTVVVTGTLAGFSRDQA 643 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + G V+ +S+KT ++VG+NPG+K +KA L V +++EE F LL Sbjct: 644 AEAIQSRGGKVTGSVSKKTAFVVVGENPGTKADKAASLKVPVLDEEGFRVLL 695 >gi|329954852|ref|ZP_08295869.1| DNA ligase [Bacteroides clarus YIT 12056] gi|328526956|gb|EGF53967.1| DNA ligase [Bacteroides clarus YIT 12056] Length = 665 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 236/708 (33%), Positives = 376/708 (53%), Gaps = 54/708 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L ++ H+ YY + P I D E+D R + P+ +D N P + Sbjct: 4 KEKIDQLRADLHRHNYNYYVLNTPEISDKEFDDRMRELQELEKEHPEY---QDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136 +G ++N + +V H P LSL ++ ++ F R+ KK N F E K DG Sbjct: 61 VGSDLNKNFTQVAHKYPMLSLGNTYSENEVTDFYDRV-----KKALNEDFEICCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE GK V A RGDG G+DV+ ++ I TIP +L N P + E+RGE+ + Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLILHGNYPALFEIRGEILMPWE 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + +R L+ +++ L E+ G Y Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ GF ++ ++A++ + Y + R LP DG+V KV+ QK L Sbjct: 235 ENLQAAAGWGFKISEHTKKAHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKNL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + C Sbjct: 355 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITHC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S+++R G+ AAH C +C Q +++HF+SR A NI+GLG + +D F Sbjct: 404 PECGSKLIR----YEGE--AAHYCPNETSCPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ I+ AD++ Q +T I+N+ G+ S N+ I + + ER + Sbjct: 458 YR----LGLIKNTADLY------QLTTDDIKNLDRMGEKSAENIIKGIEASKEVPFERVL 507 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG +A+ +AK + N+I N + LI + +G+ IAQ+I+ Sbjct: 508 FALGIRFVGETVAKKIAKSF----------NDIDELENANLEKLINIDEIGEKIAQSILA 557 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671 ++ NP N VE LK + R E+++S ++ + +V +G R + +E + Sbjct: 558 YFANPLNRELVER-LKSTGLQLYRREEDLSGYTDKLAGQSIVISGVFAHHSRDEYKELIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ G+N G +KLEKA +LG++IM+E++FL L+ Sbjct: 617 KNGGKNVGSISAKTSFILAGENMGPAKLEKAHKLGIRIMSEDEFLALI 664 >gi|296140594|ref|YP_003647837.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162] gi|296028728|gb|ADG79498.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162] Length = 688 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 239/715 (33%), Positives = 367/715 (51%), Gaps = 49/715 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E R+ L +E+ H YY P++ D E+DAL +R A+ AFP+LA P+ P Sbjct: 7 EDDRRAWQELAEEVRGHQFRYYVQDAPVLSDGEFDALLKRLQAMEDAFPELAV---PDSP 63 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG + V H SL+ +++ +LR++I R+ Q+ S+ F E KI Sbjct: 64 TKLVGGGFSTEFTAVDHLERMYSLDNVFDEGELREWIARV----QRDVGESVTFLTELKI 119 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGE 190 DG + + YE G V A RGDG +GEDV+ R + +P L+ IP ++EVRGE Sbjct: 120 DGVALNLVYEDGALVRGATRGDGRTGEDVTLNARTLRDVPHRLTPSDEFPIPAVLEVRGE 179 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249 V+ DF LN ++A G+ P+ANPRN+A+G LR+ NP +R L HGLG+ Sbjct: 180 VFFRLADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPQITSRRKLGMICHGLGRIEGG 239 Query: 250 FAKGQ-YEMLQKMRCLGFPVNNGVRQANTFHGIVS---YYNEMKSIRSTLPYDIDGLVYK 305 ++ +E + + G PV+ +Q +V Y+ E R ++IDGLV K Sbjct: 240 WSPASLHEAYRALAAWGLPVSAHTKQVVGADAVVDRVFYWGEH---RHDPEHEIDGLVVK 296 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VDE +LQ++LG +R+PRW I++K+ ++ +T+LLDI + +GRTG +TP A + PV + G Sbjct: 297 VDEIALQRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVNVGRTGRVTPYAYMAPVTVAG 356 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + + ATLHN + +V R G + +GD V +++AG+VIP+V+ +V+ R Sbjct: 357 STVEFATLHN---------ASEVQRKG--VLIGDTVTIRKAGDVIPEVLGPVVDLRDGTE 405 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F P CP C + + K G A RC C AQ ERL + R F+IEG Sbjct: 406 KAFVMPVTCPECGAALAPS---KEGD--ADIRCPNTETCPAQLRERLFYLAGRTCFDIEG 460 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + S + D+F+L T N G + L +++ Sbjct: 461 LGYEAATALTASP----VLHNEGDVFSLTEADLTQVPLFTNDGGALSANAQRLLTNLDVA 516 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L R + +L IRHVG AR+L AQE+ ++ A D L V VG Sbjct: 517 KTKPLWRVLVALSIRHVGPSAARAL----------AQELGSLEAIAAADVDQLAEVDGVG 566 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +IA+A+VE++ + VE + +V +E +V TG+LQ R Sbjct: 567 RVIAEAVVEWFTVGWHREIVEKWRAAGVTMEDERDASVPRNLEGLSIVVTGSLQNFSRDG 626 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+E + G ++ +S+KT ++VGD PGSK +KA+QLGV +++E F LL + Sbjct: 627 AKEAILVRGGKAASSVSKKTAFVVVGDAPGSKADKAEQLGVPVLDEAGFEKLLAE 681 >gi|260063119|ref|YP_003196199.1| DNA ligase [Robiginitalea biformata HTCC2501] gi|88784688|gb|EAR15858.1| DNA ligase [Robiginitalea biformata HTCC2501] Length = 673 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 232/705 (32%), Positives = 374/705 (53%), Gaps = 50/705 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ +L E+ H+ YY +P+I D ++D + + P+ DP P ++ Sbjct: 12 EKIQALRDELRDHNYRYYVLDEPVISDYDFDMKLKALQDLEKQHPEFY---DPASPTQRV 68 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + + V H P SL+ +++E+LR++ RI R D + FT E K DG Sbjct: 69 GGAITKNFETVVHDYPMYSLDNSYSVEELREWEKRIQRVL---GDVPVTFTCELKYDGAS 125 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ Y+ G + A RGDG G+DV+ +R I +IP L + P ++RGE+ + F Sbjct: 126 ISLTYQDGALLRAVTRGDGTQGDDVTTNVRTIRSIPLRLQGDYPNRFDIRGEIVLPLEGF 185 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 +N E + G PY NPRN ASG L+ + + + R L+ ++G+ ++ A +E+ Sbjct: 186 ARMNRERVENGEDPYMNPRNTASGSLKLQDSSIVAERPLDCLLYGMAG-RDLGADSHFEI 244 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L R LGF V + + +V+Y S R LPY+ DG+V KV+ Q++LG Sbjct: 245 LGLARKLGFKVPDTAKLCKNIDEVVAYLEYWDSHRLELPYETDGVVVKVNSLQQQEELGY 304 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW +++KF +QA+TRL I Q+GRTG +TPVA LEPV + G + A+LHN D Sbjct: 305 TAKSPRWAMAYKFKSEQAATRLERITYQVGRTGAITPVANLEPVLLAGTTVKRASLHNAD 364 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I L D+R GD V V++ GE+IPK+ + ++R ++ P ++ S CP C Sbjct: 365 QIAKL-----------DVREGDTVYVEKGGEIIPKITGVDFSKRPENSAPTTYISACPEC 413 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + +VR NP A H C C Q R++HF+SR A +IEGLG + ++ FK Sbjct: 414 GTELVR--NPGE----AQHFCPNDTGCPPQITGRIQHFISRKAMDIEGLGSETVELLFKE 467 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I AD++TL +T + + + S NL + + R + ER +F+L Sbjct: 468 G----LIGDYADLYTL------TTDDLLPLERMAEKSAANLVEGVAASRKVPFERVLFAL 517 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR+VG +A+ LA+ Y + I+ ++A + D+ L +V +G IA ++VEF+ Sbjct: 518 GIRYVGETVAKKLARAY-------KNIDALMAASADE---LQQVDEIGQRIAGSVVEFFS 567 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIE---NKKLVFTGTLQKIQRHKAQEYVTQLG 674 +P N VE LK E+ + + + K V +G + I R++ ++ + G Sbjct: 568 DPVNRERVEK-LKGHGLQFSLSEEQLRGQTDLFRGKTFVVSGVFESIGRNELKKRIEDNG 626 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 V++ +S +T+ ++ G N G SK EKA + GV I++E QFL +L Sbjct: 627 GKVTSSVSARTNFLVAGANMGPSKREKADKNGVPIISETQFLEML 671 >gi|221632243|ref|YP_002521464.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159] gi|254781441|sp|B9KXM2|DNLJ_THERP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221155911|gb|ACM05038.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159] Length = 695 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 239/715 (33%), Positives = 374/715 (52%), Gaps = 55/715 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R + L + I ++ YY + P + D+EYDAL +P+L P+ P Sbjct: 15 EVRARVEELRRLIQRYNYEYYVLNAPTVSDAEYDALMLELRRWEEQYPELV---TPDSPT 71 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G V H IP LSL +++ ++R + R+YR ++D + F EPK+D Sbjct: 72 QRVGAPPAEGFATVQHEIPMLSLGNVFSDGEIRAWAERVYRLSGRQD---VEFVTEPKVD 128 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEV 191 G +++ Y G V A RGDG++GEDV+ +R I IP L + +P ++EVRGEV Sbjct: 129 GLAVSLLYRDGVLVRGATRGDGYTGEDVTNNVRTIRMIPLRLYPPEGVIVPPVLEVRGEV 188 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH--GLGKTSE 248 Y++ DF LN E G +ANPRNAA+G LR+L+P+ +R L F GL + +E Sbjct: 189 YMNVRDFERLNRERGEQGLPLFANPRNAAAGSLRQLDPSVTASRPLRFAAWDIGLWEGTE 248 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A L+ +R L PV R + +++ + + R L ++ DG+V KV++ Sbjct: 249 PPAT-HLATLEFLRQLQIPVVPDYRLCRSVDEVIAECHRWQERRDALEFEADGVVIKVND 307 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +L + LG R PR ++KF + +T + D+ +GRTG LTPVA LEPV IGG ++ Sbjct: 308 RALYQALGVVGREPRGATAYKFPAHEKTTIVRDVIWSVGRTGKLTPVAVLEPVEIGGVIV 367 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHNE+ I+ L + +GD V+V+R G+VIPKVV I R D +P Sbjct: 368 ERATLHNEEEIRRL-----------GLLIGDAVVVQRRGDVIPKVVATIPQRRDGDERPV 416 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C + +R L + + C L S ++HF SR+A +IEGLG+ Sbjct: 417 DIPRQCPVCGAHTIR-LEGEVDRYCPNPNCPARLKAS------VRHFASRNAMDIEGLGE 469 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + D F IR D++ + ++ + GFG V NL +I +N Sbjct: 470 KISDLFVD----LGIIRSLPDLY------EIDWARVLQLEGFGPKKVENLRKAIEASKNR 519 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 RF+F+LGIRHVG A+ LA ++ S I+ ++ D+ L+++P G + Sbjct: 520 PFARFLFALGIRHVGERNAQLLADHFRS-------IDRLMEATIDE---LLQIPGFGPAV 569 Query: 609 AQAIVEFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 AQ++ EF++ P+N +E + ++ V + K +V TG L+ + R + Sbjct: 570 AQSVFEFFREPKNREMIERFRRLGVRMAEEEAAAVATVQGPLAGKTVVLTGRLETLTRSQ 629 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+E + + GA V+ +SRKTD + G +PGSK +AQQLGV I+ EE L +L++ Sbjct: 630 AEELLRRAGAHVTDSVSRKTDYVFAGADPGSKYVRAQQLGVPILGEEDLLRMLRE 684 >gi|89898194|ref|YP_515304.1| NAD-dependent DNA ligase LigA [Chlamydophila felis Fe/C-56] gi|123735917|sp|Q254X9|DNLJ_CHLFF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89331566|dbj|BAE81159.1| DNA ligase [Chlamydophila felis Fe/C-56] Length = 662 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 235/708 (33%), Positives = 386/708 (54%), Gaps = 60/708 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 R++ +L ++I D YY PII D +YD ++ +I P+ P+ Sbjct: 6 TREQYLALCKDIEEDDYRYYVLHDPIISDYDYDMKMQKLLSIEAQHPEWRVLWSPS---M 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++ S VTHS P LS+ + +E+L F +R+ +K + +TLE KIDG Sbjct: 63 RLGDRISGSFPVVTHSHPMLSIANAYTLEELNDFFSRV----EKTLGYTPTYTLELKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + IRYE+ V A RG+G GED++ IR I ++P L PE +EVRGEV+ ++ Sbjct: 119 IAVAIRYEQRVLVQALSRGNGRQGEDITTNIRTIRSLPLRLPKEAPEFLEVRGEVFFTRA 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F +N + +ANPRNAA G L+ L+ + + N + G +E + Y+ Sbjct: 179 TFEQINSIQRQSEKPEFANPRNAAGGTLKLLSAKEAAQR-NLELSIYGAWAEENTESHYD 237 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + GFPV RQ + +V +E+ IR LP +IDG+V KVD QK LG Sbjct: 238 NLMLCQKWGFPVFGRPRQYKSVEEVVKALHEIAKIRDQLPMEIDGVVIKVDNTEDQKVLG 297 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ RW +++K+A +Q T L DI IQ+GRTG+LTPVA+L PV + G+ ++ A+L+NE Sbjct: 298 MTAKHYRWALAYKYAPEQGETILEDILIQVGRTGVLTPVAKLRPVFLSGSKVSRASLYNE 357 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 + I+ +DIR+GD V V++ GE+IPKVV + + +R +P+ P +CP+ Sbjct: 358 EEIE-----------RKDIRIGDTVYVEKGGEIIPKVVGVCLEKRPEGTKPWVMPEYCPV 406 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C RV R+ + + RCT +CSA +E+++ FV R+A +IE LG++ + F Sbjct: 407 CHERVSRESDK------VSVRCTNS-SCSAGTIEKIRFFVGREALDIEHLGEKVITKLF- 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERF 553 D+ + RR E++L GF D S+ N+ SI K ++ LERF Sbjct: 459 ------------DLGLIHRRCDIFQITEEDLLQVPGFKDKSIKNVLKSIEKAKSAPLERF 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I +LGI +VG A +LA+++LS ++ +++ + ++ L + +G +A++IV Sbjct: 507 IAALGIPYVGIGGANALAQHFLS-------LDAVMSASLEE---LKVIDGIGSKVAESIV 556 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRH---EKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +++ N+ ++ +L S+G + S+ + K V TG+L+K+ R +A+ + Sbjct: 557 DYFHQSDNVEEIQKML-----SLGVNVLPYSRASASCQGKTFVITGSLEKMTRSEAEASI 611 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G V + +S+ + ++VG +PGSKL+KAQ+L + I+NE L +L Sbjct: 612 RNCGGKVGSSVSKSINYLVVGKDPGSKLKKAQELQIPILNESDLLKIL 659 >gi|225873424|ref|YP_002754883.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196] gi|254781243|sp|C1F7S7|DNLJ_ACIC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225792636|gb|ACO32726.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196] Length = 677 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 249/717 (34%), Positives = 370/717 (51%), Gaps = 53/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S A +++ SL + I +H+ YY +P I D +D L R+ + P+L P Sbjct: 1 MSHASAAQQIESLRESIRHHEYLYYVQDQPEIDDLAFDELMRKLQRLEAEHPELI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ KV HS P LSL+ + + E+LR + R+ Q + I + E Sbjct: 58 DSPTQRVGGKPKEGFAKVAHSRPMLSLDNVNSEEELRDWERRVRE--QAGQNAEIEYVCE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------RVLSLNIPEII 185 K+DG + + Y G+ RGDG GEDV+ +R I ++P ++ +P Sbjct: 116 YKLDGLSMALHYRDGQLARGLTRGDGEIGEDVTTNVRTIRSVPLSIADGKLQQAKMPANF 175 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH-GL 243 EVRGEV + F LN+E A G P ANPRNAA+G +R L P + R L+F+ + L Sbjct: 176 EVRGEVVMPFTAFEKLNEEREAQGLAPAANPRNAAAGTIRTLEPNIVAQRRLDFYAYFAL 235 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + E Q E L + LGF VN A + +V + N + RS L Y+IDG+V Sbjct: 236 TEKGEDAFGEQEEALDALATLGFRVNQHRHAAKSIETVVEFVNRAEEHRSRLGYEIDGVV 295 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV+ LQ++LG R+PRW +++KFA + T++ DI +Q+GRTG LTPVA L PV + Sbjct: 296 VKVNSAVLQRRLGYTGRAPRWAVAYKFAARSGVTQVEDIQVQVGRTGKLTPVAWLAPVQV 355 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +T ATLHN D I+ L +R+GD V ++R G+VIPKVV+++ + HP Sbjct: 356 GGTTVTRATLHNADEIERL-----------GLRIGDFVRIERGGDVIPKVVEVVDDAEHP 404 Query: 424 -DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + F FP CP C S VVR A +RC C A+ E L HF SR N Sbjct: 405 RGTKHFHFPHACPACGSEVVRTPGE------ADYRCV-NTDCPARLRESLLHFASRGVMN 457 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEG+G+ + ++ +DI++L Q S ++ G S T L I Sbjct: 458 IEGMGEAIVMQLLGR----GLVKTVSDIYSLTEEQLVSLERM------GKKSATALLGEI 507 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 +K R L+R +F LGIR VG A++LA+ Y S Q + ND Sbjct: 508 DKSRQAPLDRVLFGLGIRFVGERTAQALAEEYGSMDALMQASREELERVND--------- 558 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG +++AI EF+ PRN VE L+E ++ +S++ V TGTL + Sbjct: 559 -VGPRVSEAIREFFDEPRNRDLVER-LREAGLRFTGEKRKKTSQLAGLTFVLTGTLPGLS 616 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+ + G VS +S+KT+ ++ G + GSKLEKA LGV +++E + +L+ Sbjct: 617 RDEAKGKIENAGGHVSGSVSKKTNYVVAGADAGSKLEKANSLGVPVIDEAALIKMLE 673 >gi|330981936|gb|EGH80039.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 787 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 218/623 (34%), Positives = 338/623 (54%), Gaps = 50/623 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTLEPKIDGT 137 + +V H +P LSL + D+ +F R+ + + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ P+++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + +G K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L+ ++ G PV+ ++ AN ++YY ++ R L Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L + +GD V+++RAG+VIP+VV ++ R +A+ P C Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415 Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S V R + GK A +RC G LAC AQ + + H+VSR A +IEGLG Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + I PAD++ L+ Q I ++ GF ++S L +I R Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGI VG E A+ LA+ S + Q + ++ + +P VG + Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 575 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 576 AYEIHSFFEDEHNRSVIDALLGE 598 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + + II+ DWL + + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQA--LPE 663 Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ + N A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDSANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779 Query: 719 QQYNTTL 725 + + Sbjct: 780 AELGVAV 786 >gi|226945096|ref|YP_002800169.1| NAD-dependent DNA ligase LigA [Azotobacter vinelandii DJ] gi|254781546|sp|C1DN27|DNLJ_AZOVD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226720023|gb|ACO79194.1| DNA ligase, NAD-dependent [Azotobacter vinelandii DJ] Length = 784 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 219/625 (35%), Positives = 343/625 (54%), Gaps = 46/625 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A + ++ L EI H+ YY P + D+EYD L A+ P+L P P Sbjct: 5 QTAAERIARLRSEIDEHNYRYYVLDAPSVPDAEYDRLFNELKALEAEHPELV---TPESP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GGE + +V H +P LSL + EDL F + + + + + ++ EPK+ Sbjct: 62 TQRVGGEALAAFGQVRHELPMLSLGNAFAEEDLLDFDRNVCKGLDRGIE-VVEYSCEPKL 120 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYI 193 DG +++ YE G+ V A RGDG +GED++A +R + IP R+ P ++EVRGE+Y+ Sbjct: 121 DGLAVSLLYEDGQLVRGATRGDGSTGEDITANVRTVRNIPLRLHGQGWPAVLEVRGEIYM 180 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK--TSEIF 250 + F ALN I G K +ANPRNAA+G LR+L+P R L F +G+G+ +E+ Sbjct: 181 PRAGFEALNARAIENGGKTFANPRNAAAGSLRQLDPKITAGRPLEFCGYGIGRFEGAEV- 239 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + +L+ +R G P++ ++ A + ++YY + R L YDIDG+V+KV+ Sbjct: 240 PQTHTSLLETLRRWGLPISRELQLARSVQDCLAYYRAIGERRQGLAYDIDGVVFKVNRLD 299 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG RAR+P W I++KF ++ T LL ++ Q+GRTG +TPVARL+PV + G ++N Sbjct: 300 WQRELGFRARTPHWAIAYKFPAQEELTELLGVEFQVGRTGAITPVARLKPVQVAGVTVSN 359 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D + L + +GD V+V+RAG+VIP+++ ++ R DA+P Sbjct: 360 ASLHNMDEVARL-----------GVMIGDTVIVRRAGDVIPQIMQVVGERRPADARPVEV 408 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAA------HRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P CP+C S V R K GK A+ +RC G LAC AQ + + HFVSR A +I+ Sbjct: 409 PRQCPVCGSAVERTQLVKRGKGRASLSEGAIYRCVGRLACQAQLKQAIVHFVSRRAMDID 468 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ ++ + ++ PAD++ L Q + + GF +VS NL +I Sbjct: 469 GLGERIVEQLVDT----GLVKSPADLYILTFEQ------LVVLDGFAEVSSNNLLAAIAA 518 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R SL RFI++LGI VG E A+ LA+ S + + + LI +P V Sbjct: 519 SRRPSLARFIYALGIPDVGEETAKRLARALGSLTRIEKALPEV----------LIWLPDV 568 Query: 605 GDIIAQAIVEFYQNPRNICAVEALL 629 G +A I F+++ N+ + LL Sbjct: 569 GLEVAHEIHSFFRDEHNLTVIGQLL 593 Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 20/183 (10%) Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 SL + L I + A A+ LA+ A + +I + D WL+L + + Sbjct: 614 SLGELLDKLDIPGIAATGAKKLAEA-------AGSLEAVIGLSQD-WLTLNTTKGLSEKA 665 Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRH---EKNVSS--EIENKKLVFTGTLQK 660 QA+ EF+ P N+ A+E L+E G H E+ + + + V TGTL+ Sbjct: 666 RQALREFFAVPANVEHARAIEGQLRE----FGMHWESERRCAEGLPLAGQTWVLTGTLES 721 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R + + + LGA V+ +S KT ++ G GSKL KA +LGVK+++EE FL LL+Q Sbjct: 722 MSREQGKARLESLGAKVAGSVSAKTACVVAGPGAGSKLAKAGELGVKVLDEEAFLALLRQ 781 Query: 721 YNT 723 + Sbjct: 782 LES 784 >gi|190575033|ref|YP_001972878.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia K279a] gi|254781423|sp|B2FKJ1|DNLJ_STRMK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190012955|emb|CAQ46587.1| putative DNA ligase [Stenotrophomonas maltophilia K279a] Length = 821 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 224/658 (34%), Positives = 349/658 (53%), Gaps = 85/658 (12%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++I+ + Y++ P I D +YD + R +A+ P+LAR++ P ++G + Sbjct: 12 LRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPT---QQVGARPS 68 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 +V H++P LSL ++ E++ F+ RI ++ S+ F+ EPK+DG I++RY Sbjct: 69 GRFPEVRHAVPMLSLSNAFSDEEVADFVRRID---ERLGRRSLRFSAEPKMDGLAISLRY 125 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALN 202 E G FV A RGDG +GEDV+A +R I IP R+ + P+++EVRGEVY+++ DF A N Sbjct: 126 EDGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGEVYMARADFEAYN 185 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQK 260 + G K ANPRNAA+G LR+L+P R L+FF +G G+ L + Sbjct: 186 ERARLQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHSGTLAQ 245 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + GFPV+ + G++ YY + R LP+DIDG+VYK+D+ + Q+ +G +R Sbjct: 246 LGAWGFPVSELCKVVEGTDGLLGYYRTIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSR 305 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PRW I+HKF ++ ST + I+IQIGRTG TPVARL PV + G +++NATLHN D I Sbjct: 306 APRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIA 365 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 LD +RVGD V+V+RAG+VIP+VV +I++ R P+ P+ CP+C S Sbjct: 366 RLD-----------VRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTRCPVCGSE 414 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE-------------GLG 487 +VR+ + AA RC+G L+C AQ+ E + HF SR A +I+ G+ Sbjct: 415 IVRE------EGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIV 468 Query: 488 KQQLDFFFKSEDPAFSIRIPADI-----------------------------------FT 512 K D + S D +++ D + Sbjct: 469 KSVADLYRLSRDTLLHLKLVLDAEEPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPGWR 528 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 Q Q ++ + N NL +I+ R +LER +F+LGI HVG A++LA+ Sbjct: 529 AQALAQPASFEW-NTKKIATKWADNLIAAIDASRAATLERVLFALGIEHVGESTAKALAQ 587 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 ++ + +I H W RVP +G +A+++ F++ N A++ LL+ Sbjct: 588 WFGDLE--------LIRHLP--WPLFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLQ 635 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 59/101 (58%) Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 + A E ++E+ + V+ ++ + +V TGTL ++ R A+E + LGA VS + Sbjct: 721 LLAAENAMREILAKAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSV 780 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 S+KT ++ G GSKL+KAQ LGV + +E++ L L ++ Sbjct: 781 SKKTSFVVAGTEAGSKLDKAQSLGVSVWDEDRLLAYLAEHE 821 >gi|150005810|ref|YP_001300554.1| DNA ligase [Bacteroides vulgatus ATCC 8482] gi|237725408|ref|ZP_04555889.1| DNA ligase [Bacteroides sp. D4] gi|319640984|ref|ZP_07995691.1| DNA ligase [Bacteroides sp. 3_1_40A] gi|166215396|sp|A6L5G8|DNLJ_BACV8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149934234|gb|ABR40932.1| DNA ligase [Bacteroides vulgatus ATCC 8482] gi|229436095|gb|EEO46172.1| DNA ligase [Bacteroides dorei 5_1_36/D4] gi|317387362|gb|EFV68234.1| DNA ligase [Bacteroides sp. 3_1_40A] Length = 665 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 242/707 (34%), Positives = 375/707 (53%), Gaps = 56/707 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +E+ H+ YY + P I D E+D L R + P+ D N P ++G Sbjct: 7 IDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRVGS 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMI 139 ++N + +V H P LSL ++ ++ +F R+ KK N F E K DGT I Sbjct: 64 DINKNFTQVVHKYPMLSLANTYSETEVTEFYDRV-----KKSLNEDFEICCEMKYDGTSI 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198 ++ YE GK V A RGDG G+DV+ ++ I +IP VL PE E+RGE+ + F Sbjct: 119 SLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPETFEIRGEILMPWVVF 178 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257 LN E A +ANPRNAASG L+ N + +R L+ +++ L + G YE Sbjct: 179 EELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L++ GF +++ R+ T + + R LP DG+V KV+ Q+ LG Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA TRL + Q+GRTG +TPVA L+P+ + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+GL D+ +GD V V++ GE+IPK+V + + R F + CP C Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR G+ AA+ CT AC Q +++HF+SR A NI+GLG + +D F++ Sbjct: 407 GSKLVR----YEGE--AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 IR AD++TL+ T+ I N+ G+ S N+ I + + + ER +F+L Sbjct: 461 G----LIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 GIR VG +A+ +AK + S A ++N LI V +G+ IAQ+I+ ++ Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADASLDN-----------LIHVDEIGEKIAQSILLYF 559 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQL 673 NP+N +E L+ + E++ S ++ K +V +G R + +E + + Sbjct: 560 ANPKNRDIIER-LRVAGVRLEADEEDTSEHTDKLAGKSIVISGVFAHHSRDEYKELIEKH 618 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G +S KT I+ GDN G SKLEKAQ+LGV I++EE+FL +++ Sbjct: 619 GGKNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665 >gi|76801093|ref|YP_326101.1| NAD-dependent DNA ligase LigA [Natronomonas pharaonis DSM 2160] gi|121729348|sp|Q3ITK1|DNLJ_NATPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76556958|emb|CAI48532.1| DNA ligase (NAD) [Natronomonas pharaonis DSM 2160] Length = 691 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 234/719 (32%), Positives = 362/719 (50%), Gaps = 53/719 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ L A +++ +L + I +HD YYQ + P+I D YD L R + + F R Sbjct: 19 PVDELDAASATRQVETLREAIRFHDYRYYQLADPVISDRAYDQLFERLERLESKF---DR 75 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSI 126 S P ++GGE L V H P S+E ++D+R F TRI R + + Sbjct: 76 SS-ATSPTQRVGGEPLDELETVEHVAPMRSIESSVEVDDIRDFDTRIQERLAAAGYEGPV 134 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 + EPK DG + + YE+G+ AA RGDG G+DV+A +R I ++P L + P + Sbjct: 135 RYLCEPKFDGLSVELVYEEGELSRAATRGDGQEGDDVTANVRTIRSVPLTLDGDCPSFLA 194 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGE+++ K+ F N E + G +P++NPRNAA+G LR+L+P+ R L+ FV + Sbjct: 195 VRGEIFMPKDAFQEYNRERLERGEEPFSNPRNAAAGTLRQLDPSVTAERPLDCFVFDILD 254 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + + + GF V++ + + +++ EM R++L Y+IDG+V K Sbjct: 255 DGGRGFETRMAEHEAVESWGFQVDDHTARVDDIEAAIAFREEMLDGRASLDYEIDGIVIK 314 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +D LG AR+PRW ++KF + T + DI +Q+GRTG LTPVA L+PV + G Sbjct: 315 LDRKDACALLGATARAPRWAYAYKFPARTEETTVRDIVLQVGRTGRLTPVALLDPVEVSG 374 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ ATLHN I L + +GDRV +KRAG+VIP + ++ +ER Sbjct: 375 VEVSRATLHNPQQIAEL-----------GVGIGDRVTLKRAGDVIPYIEAVVDSEREAH- 422 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 F FP CP+C+S + RD G L CTGG+AC AQ ++H+ SR +IEG Sbjct: 423 --FEFPDRCPVCESPLERD-----GPLA---YCTGGVACPAQLRRAVEHYASRSGLDIEG 472 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG+ +D D R+P D++ L S + + G+G S NL + + Sbjct: 473 LGESAVDQLV---DAGLVERLP-DLYDL------SVADVAELDGWGRTSAENLLEELEAS 522 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 L F+ +LGI VG A +A+ E + A + L V +G Sbjct: 523 TEPPLPAFLSALGIPGVGTTTAADIAR----------EFGTLDAVMDATAEELRAVDGIG 572 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 + I EF+ + RN +E L K V P + + + VFTG+L + R Sbjct: 573 PTLGGEIAEFFDSDRNQQVIEQLRKRGVDPEPA---ETAGDALSGQTFVFTGSLDGLTRE 629 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQYN 722 +A E V G + +S TD ++VGD+PG K E A + GV+ +++ F LL+ + Sbjct: 630 EAHELVETSGGTATGSVSGNTDYLVVGDSPGQRKREAANEHGVETLSQSDFESLLESHG 688 >gi|330808456|ref|YP_004352918.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376564|gb|AEA67914.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 785 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 221/626 (35%), Positives = 342/626 (54%), Gaps = 52/626 (8%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L E+ H+ Y+ +P I D+EYD L A+ P+L S+ P + G Sbjct: 8 IQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQRV----G 63 Query: 81 EMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPK 133 + LS F +V H IP LSL ++ +R+F R+ + ++ ++ EPK Sbjct: 64 SVALSAFSQVRHEIPMLSLGNAFDETTMREFDRRVTEGLDLPMGDLLGGGAAVEYSCEPK 123 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG +++ Y+ G V A RGDG +GED+S +R + IP ++ P ++EVRGEVY Sbjct: 124 LDGLAVSLLYQDGMLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPLLEVRGEVY 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 +SK F LN + G K +ANPRNAA+G LR+L+ + IT R L F +G+G+ + Sbjct: 184 MSKAGFERLNATQLEAGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGIGQVTADI 242 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A L++++ G P++ ++ A+ + YY ++ R+ LPY+IDG+V+KV+ + Sbjct: 243 ADTHIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFKVNSIA 302 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G + N Sbjct: 303 SQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVAN 362 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D + L + +GD V+++RAG+VIP+VV +I R DA+P Sbjct: 363 ATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVITERRPDDARPVEI 411 Query: 431 PSFCPICQSRVVRDLNPKTGK------LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P CP+C S V R K K A +RC G LAC AQ + + HFVSR A +IE Sbjct: 412 PRQCPVCGSHVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIE 471 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ ++ D + PAD++ L Q + ++ GF ++S NL +I Sbjct: 472 GLGEKSVEQLV---DEGL-VGSPADLYALTFEQ------VVDLEGFAELSSKNLLAAIVD 521 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + SL RFI++LGI VG E A+ LA+ S + + ++ + +P V Sbjct: 522 SKKPSLARFIYALGIPDVGEETAKVLARSLGSLERVQAAVPQVLTY----------LPDV 571 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK 630 G +A I F+++P N ++ LL+ Sbjct: 572 GLEVAHEIHSFFEDPHNRQVIKDLLR 597 Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 8/153 (5%) Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 Q A + ++ A N DWL + + + + A A+ EF+ N EA +++ G Sbjct: 636 QKLADKFGSLEAVMNADWLDMRQA--LPEKQANAVREFFAVAANRQQAEAAEQQLR-DFG 692 Query: 638 RHEKNVSSEIEN-----KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 H ++ +E V TG+L+ + R A++ + LGA V+ +S KT ++ G Sbjct: 693 MHWQSEKKVVEGLPEAGHTWVLTGSLELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGP 752 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 GSKL KA +LG+K+++EE F+ L Q+ T+ Sbjct: 753 GAGSKLTKANELGLKVLDEEAFVVFLSQHGITV 785 >gi|327541957|gb|EGF28460.1| NAD-dependent DNA ligase LigA [Rhodopirellula baltica WH47] Length = 754 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 238/731 (32%), Positives = 387/731 (52%), Gaps = 86/731 (11%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L EI+ H+ YY + P I D +YD L + + +P+L + P+ P +GG Sbjct: 64 VQQLVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENEYPELRQ---PDSPTQLVGG 120 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 ++ L +V H +P LS++ ++ E+L + RI + + + S+ +T+E KIDG + Sbjct: 121 DVVDQLVQVPHRVPMLSIDNTYSREELAAAMERIEKSLEGE---SVAWTMEYKIDGVAGS 177 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR-----------VLSLNIPEIIEVRG 189 IRYE G+ A RG+G G+D++ +R I +PR V N+PE++EVRG Sbjct: 178 IRYENGELTLALTRGNGQVGDDITHNVRTIRELPRSIADAALAHPEVADGNVPEVLEVRG 237 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 E+Y++ D LN G +P+ N RN +G +R L+P +R + FF HG G+ Sbjct: 238 ELYMTDADLADLNVRQTEAGHEPFKNTRNVTAGTIRLLDPKIAASRNIRFFCHGSGELVG 297 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + A L+ ++ LG P+ V + N I EM LP++IDG+V+ Sbjct: 298 VQASDHMTFLEHVQALGIPIAPDVVRFENKENALQAIAKLELEMPD----LPFEIDGIVF 353 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD F +++LG R++SPRW+I++KF +A T L ID+Q+G+TG +TPVA L PV+I Sbjct: 354 KVDSFEQREKLGVRSKSPRWVIAYKFERYEAITTLEAIDVQVGKTGTITPVAYLTPVDIA 413 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 ++ A+LHN D I+ L D+RVGD V+V++AG++IPKVV + E+H Sbjct: 414 DTTVSRASLHNADEIERL-----------DVRVGDTVVVEKAGKIIPKVVRV---EKHAR 459 Query: 425 AQP---FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 +P F FP+ CP C + RD + G + RCT AC AQ +RL +F SR Sbjct: 460 TKPLPKFEFPTHCPQCDEVLTRD---EGGVYI---RCTNP-ACPAQLRQRLVYFGSRTGM 512 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL-----------QRRQQTSTTKIENILGF 530 +I+GLG++ +D + E + AD++ L + R+ IE + F Sbjct: 513 DIDGLGEEVVDLLLQKE----LVENYADLYRLNVDELAELTWPRLRKGKGDEMIE--VQF 566 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL-AKYYLSYQNFAQEINNIIA 589 G + +L IN+ R L R + S+ IRH+G +A+ + AK++ N+ Sbjct: 567 GRKNAESLVAGINESRTRGLARVLSSISIRHIGPRVAKLITAKFW-----------NLDL 615 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFY------QNPRNICAVEALLKEVSPSIGRHEKNV 643 + L + +GD IA+++V+F Q ++ AV + E P + ++ Sbjct: 616 LRSAKAEDLAAIHEIGDRIAESLVKFIHSESGSQTLSDLDAVGVTMSEPEP-VATPDEEA 674 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 + + K +V TGTLQ R + + + +LG ++ +S+KTD +I G+ GSKL KA+ Sbjct: 675 NLPLAGKNIVATGTLQHYTRDEIKARIEELGGRAASSVSKKTDFLIAGEKAGSKLTKAES 734 Query: 704 LGVKIMNEEQF 714 LGV++++E+ F Sbjct: 735 LGVEVLSEDDF 745 >gi|241896133|ref|ZP_04783429.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313] gi|241870647|gb|EER74398.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313] Length = 675 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/707 (32%), Positives = 380/707 (53%), Gaps = 58/707 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A +++ L+ ++ YY+ P + D+EYD + +R + AFP+L +P+ Sbjct: 11 EAAQQMEKLQLQLQQWAKEYYENDSPTVEDAEYDKVYKRLQELEAAFPELV---NPDSIT 67 Query: 76 NKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG S L KV H +P LSL ++++++L ++ QK + + E KI Sbjct: 68 QQVGGHKTKSELPKVEHDVPMLSLGDVFSMDELTNWMVNT----QKSFTEELIYNAELKI 123 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I++ Y++G V A+ RGDG+ GEDV++ I+ + IP+ LS P IEVRGE+Y+ Sbjct: 124 DGLAISLVYQEGLLVQASTRGDGNVGEDVTSNIKYVDDIPKKLSE--PLSIEVRGEIYMP 181 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP--TDITRYLNFFVHGLGKTSEIFAK 252 K F++LN+ G +ANPRNAA+G LR+L+P T + F + + K Sbjct: 182 KEAFVSLNESRERDGLPTFANPRNAAAGSLRQLDPLITKKRKLSAFMYQVVDAPRSLNIK 241 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E+L ++ LG P NN + + +Y + R +L Y IDG+V KV+ S Sbjct: 242 TQSELLIRLSQLGLPANNTNAVVTSTTDVENYIVSQTNHRDSLSYGIDGIVIKVNNLSFH 301 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG + P+W I++KF ++A T + I+ +GRTG +TP A + PV + G ++ A+ Sbjct: 302 EELGNTVKVPKWAIAYKFPPEEAETIIQGIEWTVGRTGAVTPTAVMNPVQLAGTTVSRAS 361 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DY++ +DIR+GD V + +AG++IP+V +I+ R D+ + P Sbjct: 362 LHNADYLQ-----------AKDIRIGDTVTLHKAGDIIPEVGKVIIERRPEDSVLYELPK 410 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C +V G++ A RC AC AQ E L HF SR+A NI+GLG + + Sbjct: 411 ECPACHQSLVH----VDGEV--ALRCINP-ACPAQVQESLTHFASRNAMNIDGLGPKIIS 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 I D++ LQ + N+ FGD + NL ++IN +N S+ER Sbjct: 464 QLLAH----GLITKVTDLYRLQYDD------LINLDKFGDTAANNLLNAINLSKNNSVER 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIR+VGA+ A+++A + + + A+ + IA ++P +G I ++ Sbjct: 514 LLFGLGIRNVGAKAAKTIATKFGNLKAIAEATADDIA----------KLPGMGLTIGDSV 563 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQRHKAQ 667 +++ + A + L + + + ++ I+N KK+V TG+L R A Sbjct: 564 AQYFATEQ---AQQLLNDFIELKVNTEFTSQTAVIDNPMFSGKKIVLTGSLSLFSRRDAS 620 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 ++ GA+V++ +S+KTD++I G+N GSKL KAQ L ++I +E+Q Sbjct: 621 AWLESQGAIVASSVSKKTDLLIAGENAGSKLTKAQDLNIEIWSEKQL 667 >gi|294776463|ref|ZP_06741938.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510] gi|294449660|gb|EFG18185.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510] Length = 665 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 242/707 (34%), Positives = 375/707 (53%), Gaps = 56/707 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +E+ H+ YY + P I D E+D L R + P+ D N P ++G Sbjct: 7 IDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRVGS 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMI 139 ++N + +V H P LSL ++ ++ +F R+ KK N F E K DGT I Sbjct: 64 DINKNFTQVVHKYPMLSLANTYSETEVTEFYDRV-----KKSLNEDFEICCEMKYDGTSI 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198 ++ YE GK V A RGDG G+DV+ ++ I +IP VL PE E+RGE+ + F Sbjct: 119 SLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVVF 178 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257 LN E A +ANPRNAASG L+ N + +R L+ +++ L + G YE Sbjct: 179 EELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L++ GF +++ R+ T + + R LP DG+V KV+ Q+ LG Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA TRL + Q+GRTG +TPVA L+P+ + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+GL D+ +GD V V++ GE+IPK+V + + R F + CP C Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR G+ AA+ CT AC Q +++HF+SR A NI+GLG + +D F++ Sbjct: 407 GSKLVR----YEGE--AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 IR AD++TL+ T+ I N+ G+ S N+ I + + + ER +F+L Sbjct: 461 G----LIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 GIR VG +A+ +AK + S A ++N LI V +G+ IAQ+I+ ++ Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADASLDN-----------LIHVDEIGEKIAQSILLYF 559 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQL 673 NP+N +E L+ + E++ S ++ K +V +G R + +E + + Sbjct: 560 ANPKNRDIIER-LRVAGVRLEADEEDTSEHTDKLAGKSIVISGVFAHHSRDEYKELIEKH 618 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G +S KT I+ GDN G SKLEKAQ+LGV I++EE+FL +++ Sbjct: 619 GGKNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665 >gi|210621776|ref|ZP_03292805.1| hypothetical protein CLOHIR_00750 [Clostridium hiranonis DSM 13275] gi|210154540|gb|EEA85546.1| hypothetical protein CLOHIR_00750 [Clostridium hiranonis DSM 13275] Length = 678 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 237/708 (33%), Positives = 393/708 (55%), Gaps = 53/708 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + ++ +L +I+YH D YY P I D EYD L + + P+ R + P+ Sbjct: 4 EDIKLQIDNLIDKINYHSDKYYNQDTPEISDFEYDMLMKELIKLEAENPEFKRVDSPS-- 61 Query: 75 LNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 N++GG M L F +VTH P LSL ++ EDLR F R+ ++ D + + +E K Sbjct: 62 -NRVGG-MALDKFDQVTHKNPMLSLSNAYSAEDLRDFDRRV----REMTDGDVEYVVEFK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG + I YE G+F AA RG+G GED+S + I +IP L ++ I VRGEVYI Sbjct: 116 IDGLSVGITYENGEFKSAATRGNGIIGEDISKNVMTIKSIP--LKIDDKREIIVRGEVYI 173 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 SK +F +N+ + +ANPRN A+G LR+L+ R L+ FV L +E+ Sbjct: 174 SKENFEKVNEYQEEHDLQIFANPRNLAAGSLRQLDSKLTAKRPLDIFVFNLENINELDGI 233 Query: 253 GQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + + L+ ++ LGF V+ + + ++ + R +L +DIDG+V KV+ Sbjct: 234 DTHSDSLEYLKKLGFSVSENYKICKSIDEVIEFIEYWTENRGSLKFDIDGMVVKVNNIEQ 293 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + ++G A+SPRW I++KF ++ +++LDI++++GRTG +TP A LEPV + G ++ A Sbjct: 294 RNEMGFTAKSPRWAIAYKFPAERKKSKILDIEVEVGRTGTITPTAILEPVRLAGTSVSRA 353 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED+I+ +DI++ D V+V++AG++IP++V+++ +R D + F P Sbjct: 354 TLHNEDFIR-----------EKDIKLFDHVIVQKAGDIIPQIVEVVKEDRTGDEKDFVMP 402 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S CP C VR G+ AA +C ++C AQ + HFVSR+A +I+G+G+ + Sbjct: 403 SVCPECGEPTVR----LEGE--AAVKCI-NISCPAQIRRGMIHFVSREAMDIDGMGESII 455 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F K I+ +DI+ L++ Q ++ G+ S NL +I K ++ L Sbjct: 456 TLFLKE----GLIKDVSDIYYLKKEQIVPLERM------GEKSADNLIKAIEKSKSNDLW 505 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R I LGIR VG + A+ LA + S ++ II N D L ++ G I++++ Sbjct: 506 RLINGLGIRFVGVKGAKILASNFSS-------LDEII---NADVERLQQLEEFGSIMSES 555 Query: 612 IVEFYQNPRNICAVEALLKE-VSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +V+F++ +N+ ++ L V+ G + + + E K+V TGTL ++R++A+E Sbjct: 556 VVKFFREEQNLAVIQKLKDAGVNTEAGEDKSEGIPQLFEGMKIVLTGTLPTLKRNQAKEI 615 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + G ++ +S+ T ++ G+ GSKL KA LG+K+++E+ FL L Sbjct: 616 IELRGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEDMFLKL 663 >gi|327402054|ref|YP_004342892.1| DNA ligase [Fluviicola taffensis DSM 16823] gi|327317562|gb|AEA42054.1| DNA ligase [Fluviicola taffensis DSM 16823] Length = 670 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 243/721 (33%), Positives = 380/721 (52%), Gaps = 67/721 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++ +A+ ++ L +E++ H+ YY S P I D E+D L + + FP+LA P Sbjct: 1 MNLSEAQLKIEQLTKELTLHNHNYYVESNPTISDYEFDVLLKELQDLETQFPELASDLSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++GG++ V H P LSL ++ E++ ++ R+ +K I + E Sbjct: 61 T---KRVGGDITKKFATVVHKFPMLSLSNSYSEEEIIEWEQRL----KKLATGPIEYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I IRY GKF A RGDG GED+SA ++ I TIP L + P+ E+RGE+ Sbjct: 114 LKYDGVAIGIRYVNGKFARAVTRGDGTKGEDISANVKTIRTIPLTLKGDYPDDFEIRGEI 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 + K +F A+N + +G +ANPRN+ASG L+ + + R L+ F++G+ ++ Sbjct: 174 FFPKANFEAMNRQREELGEPVFANPRNSASGTLKSQDSKVVAERGLDCFLYGV-YGDDLL 232 Query: 251 AKGQYEMLQKMRCLGF--PVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + E +QK + GF P NTF GI+ + + R LP++IDG+V KV Sbjct: 233 MESHLESIQKAQEWGFKTPQEKNKYILNTFSIEGIMEFIHYWDKERYNLPFEIDGIVIKV 292 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q LG A+SPRW I++KF ++ ST L ++ Q+GRTG +TPVA L PV +GG Sbjct: 293 NNYDQQADLGFTAKSPRWAIAYKFKAERVSTTLKEVTYQVGRTGAITPVANLIPVLLGGT 352 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ A+LHN D I+ L D+ + D V V++ GE+IPK+V + + R +A+ Sbjct: 353 VVKRASLHNADQIEKL-----------DLYLEDSVYVEKGGEIIPKIVGVQTDSRPVNAE 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F CP C S + R + G++ H C L C Q R++HF+SR A NI+GL Sbjct: 402 KVIFIERCPECNSELQR----REGEV--QHYCLNDLVCPPQVKGRMEHFISRKAMNIDGL 455 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D +K E A SI AD++ L Q + N+ D S NL I + Sbjct: 456 GAETIDLLYK-EGLADSI---ADLYDLTFDQ------VVNLERMADKSANNLIIGIRNSK 505 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I ER +F+LGIR VG +A+ LA + NNI A + + LI V +G+ Sbjct: 506 EIPFERVLFALGIRFVGETVAKKLAYAF----------NNIDAISKATYDELIAVDEIGE 555 Query: 607 IIAQAIVEFYQNPRNICAVEAL--------LKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 IA A+ +F+Q+ R I +E L ++EV+ S+ +E K V +G Sbjct: 556 KIAIAVQKFFQDERAIQIIERLKIAGVQFEVEEVALD--------SNSLEGKSFVVSGVF 607 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 K R + ++ + + G +S KT ++ G+N G +KLEKA LG+ I++EE F+ + Sbjct: 608 SKFSRDEIKDLIEKNGGKNVGSISAKTTYVLAGENMGPAKLEKASSLGIPIISEEDFIQM 667 Query: 718 L 718 L Sbjct: 668 L 668 >gi|194366356|ref|YP_002028966.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia R551-3] gi|254781422|sp|B4SP88|DNLJ_STRM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194349160|gb|ACF52283.1| DNA ligase, NAD-dependent [Stenotrophomonas maltophilia R551-3] Length = 821 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 225/657 (34%), Positives = 353/657 (53%), Gaps = 83/657 (12%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++I+ + Y++ P I D +YD + R +A+ P+LAR++ P ++G + Sbjct: 12 LRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPT---QQVGARPS 68 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 +V H++P LSL ++ E++ F+ RI ++ S+ F+ EPK+DG I++RY Sbjct: 69 GRFAEVRHAVPMLSLSNAFSDEEVADFVRRID---ERLGRRSLQFSAEPKMDGLAISLRY 125 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALN 202 E+G FV A RGDG +GEDV+A +R I IP+ L+ + P+++EVRGEVY+++ DF A N Sbjct: 126 EEGHFVLGATRGDGSTGEDVTANLREIGDIPKRLNGKDWPDVLEVRGEVYMARADFEAYN 185 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQK 260 + G K ANPRNAA+G LR+L+P R L+FF +G G+ L + Sbjct: 186 ERARLQGGKVLANPRNAAAGSLRQLDPKISAQRKLSFFAYGTGEVQGGELPDTHSGTLAQ 245 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + GFPV+ R + G++ YY ++ R LP+DIDG+VYK+D+ + Q+ +G +R Sbjct: 246 LGSWGFPVSALCRVVDGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSR 305 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PRW I+HKF ++ ST + I+IQIGRTG TPVARL PV + G +++NATLHN D I Sbjct: 306 APRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIA 365 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 LD +RVGD V+V+RAG+VIP+VV +I++ R P+ P+ CP+C S Sbjct: 366 RLD-----------VRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTQCPVCGSE 414 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR-----------------DAFNI 483 +VR+ + AA RC+G L+C AQ+ E + HF SR DA + Sbjct: 415 IVRE------EGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIV 468 Query: 484 EG------LGKQQL---DFFFKSEDPAFS--------------------IRIPADIFTLQ 514 +G L + QL +EDP+ +++ + + Sbjct: 469 KGVADLYRLSRDQLLHLKLVLDAEDPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPGWR 528 Query: 515 RRQQTSTTKIE-NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + E N NL +I+ R +LER +F+LGI HVG A++LA++ Sbjct: 529 AQALVQPASFEWNTKKIATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQW 588 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + + +I H W RVP +G +A+++ F++ N A++ LL+ Sbjct: 589 FGDLE--------LIRHLP--WPLFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLQ 635 Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 59/101 (58%) Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 + A E ++++ + V+ ++ + +V TGTL ++ R A+E + LGA VS + Sbjct: 721 LLAAEKAMRQILAKAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSV 780 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 S+KT ++ G GSKL+KAQ LGV + +E++ L L ++ Sbjct: 781 SKKTSFVVAGTEAGSKLDKAQSLGVPVWDEDRLLAYLAEHE 821 >gi|167763098|ref|ZP_02435225.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC 43183] gi|167699438|gb|EDS16017.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC 43183] Length = 665 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 235/708 (33%), Positives = 375/708 (52%), Gaps = 54/708 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L ++ H+ YY + P I D E+D R + P+ +D N P + Sbjct: 4 KEKIDQLRADLHRHNYNYYVLNAPEISDKEFDDRMRELQELEKEHPEY---QDDNSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136 +G ++N + +V H P LSL ++ ++ F R+ KK N F E K DG Sbjct: 61 VGSDLNKNFTQVAHKYPMLSLGNTYSESEVTDFYDRV-----KKALNEDFEICCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE GK V A RGDG G+DV+ ++ I TIP VL + PE E+RGE+ + Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGSYPESFEIRGEILMPWE 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + +R L+ +++ L E+ G Y Sbjct: 176 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGHY 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ GF + +++A++ + Y + R LP DG+V KV+ QK L Sbjct: 235 ENLQAAAGWGFKTSEHMKKAHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKNL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 295 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTIVKRASLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + C Sbjct: 355 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSMLIGEKVKFITHC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S+++R G+ AAH C +C Q +++HF+SR A NI+GLG + +D F Sbjct: 404 PECGSKLIR----YEGE--AAHYCPNETSCPPQIKGKIEHFISRKAMNIDGLGPETVDMF 457 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ I+ AD++ Q + I+N+ G+ S N+ I + + ER + Sbjct: 458 YR----LGLIKNTADLY------QLTADDIKNLDRMGEKSAENIIKGIEASKEVPFERVL 507 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG +A+ +AK + N+I N + LI + +G+ IAQ+I+ Sbjct: 508 FALGIRFVGETVAKKIAKSF----------NDIDELENANLEKLINIDEIGEKIAQSILT 557 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671 ++ NP N C + LK + R E+++S ++ + +V +G R + +E + Sbjct: 558 YFANPLN-CELIERLKSTGLQLYRREEDLSGYTDKLAGQSIVISGVFTHHSRDEYKELIE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ G+N G +KLEKA +LG+K+M+E++FL L+ Sbjct: 617 KNGGKNVGSISAKTSFILAGENMGPAKLEKAHKLGIKLMSEDEFLTLI 664 >gi|237799321|ref|ZP_04587782.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022177|gb|EGI02234.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 703 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 225/626 (35%), Positives = 338/626 (53%), Gaps = 52/626 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTLEPKIDGT 137 + +V H +P LSL + DLR+F R+ + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ P ++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPGVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + VG K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L ++ G PV+ ++ A+ ++YY ++ R TL Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLNALKKWGMPVSRELKLADGVEECLAYYRDIGERRLTLSYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSF 433 N D + L + +GD V+++RAG+VIP+VV +V ER PD A+P P Sbjct: 367 NMDEVARL-----------GVMIGDTVIIRRAGDVIPQVVQ-VVAERRPDTARPVEVPQT 414 Query: 434 CPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 CP+C S V R + GK A +RC G LAC AQ + + H+VSR A +I GLG Sbjct: 415 CPVCGSHVERTQLIKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIGGLG 474 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ + I PAD++ L+ Q I ++ GF ++S L +I R Sbjct: 475 DKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAITDSRQ 524 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L RFI++LGI VG E A+ LA+ S Q + ++ + +P VG Sbjct: 525 PTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLE 574 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVS 633 +A I F+++ N ++ALL E Sbjct: 575 VAYEIHSFFEDEHNRNVIDALLGECG 600 >gi|313884866|ref|ZP_07818618.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8] gi|312619557|gb|EFR30994.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8] Length = 673 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 234/716 (32%), Positives = 382/716 (53%), Gaps = 71/716 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + L+++++ YY KP D+ YD + R+ + + PD P+ P Sbjct: 6 EMTLDDYQDLKEQLNQLAYAYYVLDKPQAEDAVYDQMYRQLENLEKIHPDWL---SPDSP 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +IG ++ KVTH P SL ++ E++ FI R+ Q + + F E KI Sbjct: 63 TQRIGDQVLAGFEKVTHLEPLYSLANAFSEEEVVAFIDRV----QNQVSGPLTFMCECKI 118 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I++RYE G FV A RGDG GE++++ +R I +P L L P E RGE Y+ Sbjct: 119 DGLSISLRYEDGLFVQGATRGDGRVGENITSNLRTIKALP--LRLQKPVSGEFRGEAYMP 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 K F LN+ G P+ANPRNAA+G LR++NP + R LN F++G + Sbjct: 177 KAVFQKLNESRDLAGLAPFANPRNAAAGGLRQINPKEAAKRQLNIFMYGAVYNEDYQIDS 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q ++ ++ LG N R + I++Y E+ R+ LPY+IDG+V KV++ + Q Sbjct: 237 QAQLFDFLQELGLRTNPLRRLCHNKEEIMAYIQEVGQKRADLPYEIDGVVIKVNQVAQQS 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG ++PRW I++KF + +TRL +++ +GRTG++TP A ++PV + G + A+L Sbjct: 297 SLGYTVKAPRWAIAYKFKAQVEATRLKEVEWTVGRTGVVTPTAVMDPVFLAGTTVQRASL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D IK L D+R+GD+V++ +AG++IP+++++ +++R D+ P P Sbjct: 357 HNIDLIKAL-----------DVRIGDQVVIHKAGDIIPEIIEVNLDQRPADSTPLVIPET 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C + R+ G++ A RC L C AQ+L ++ HF SR A NI GLG++ + Sbjct: 406 CPVCYHPLERE----AGEV--ALRCLNPL-CPAQRLAQISHFGSRGAMNISGLGEKVVAA 458 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + I+ AD++ L + + + + S L +I + SLER Sbjct: 459 LLDHD----MIQNVADLYHL------TLADLLKLPNTKEKSAQKLLQAIEASKTNSLERL 508 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQ----EINNIIAHNNDDWLSLIRVPLVGDIIA 609 +F GIRHVGA+ AR +A+ + + + +Q EI NI +G IIA Sbjct: 509 LFGFGIRHVGAKAARLVAQKFDTIEALSQASEEEITNIDG--------------IGTIIA 554 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE----------NKKLVFTGTLQ 659 +++V+F Q+ A AL+++++ ++G + ++ +K +V TGT+ Sbjct: 555 KSLVDFLQDE----ASHALIQDLT-NMGVNMTYTGPKVNQTSLDNDFWLDKTVVLTGTMA 609 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R +A+E + LGA V +S+ TD ++ G + GSKL KA+QLGV I++E +FL Sbjct: 610 SYSRSQAKEILQGLGAKVIGSVSKNTDYLVAGQDAGSKLSKAEQLGVTILDESEFL 665 >gi|117926963|ref|YP_867580.1| Fis family transcriptional regulator [Magnetococcus sp. MC-1] gi|166215818|sp|A0LDY1|DNLJ_MAGSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|117610719|gb|ABK46174.1| transcriptional regulator, Fis family [Magnetococcus sp. MC-1] Length = 768 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 226/613 (36%), Positives = 336/613 (54%), Gaps = 47/613 (7%) Query: 111 ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI 170 I R R W + + + EPK+DG ++ Y +G V AA RGDG GEDV+A R I Sbjct: 170 ILRRLRLWAAEQPQRVEYVAEPKLDGLAFSLTYAEGVLVRAATRGDGQEGEDVTAHARTI 229 Query: 171 PTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP 229 +P R+ P ++EVRGEVY+ F LN E G K +ANPRNAA+G LR+L+P Sbjct: 230 QDVPLRLQGAGYPALLEVRGEVYMPLATFEKLNAEARERGEKTFANPRNAAAGSLRQLDP 289 Query: 230 T-DITRYLNFFVHGLGKTSEIFAKGQY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE 287 +R L F +G G +Y E+L ++ G V+ + G ++Y Sbjct: 290 KITASRGLRMFCYGTGYVEGGTLADRYAEILAALKGWGLRVSPEAERVEGAQGCLAYTER 349 Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347 + R TLPY+IDG V KVD L+++LG AR+PRW ++ KF + ST + ID+Q+G Sbjct: 350 LGEKRETLPYEIDGAVLKVDSQRLRERLGFVARAPRWAMAFKFPATEESTTVQAIDLQVG 409 Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 RTG++TPVARLEPV +GG +TNATLHN ++ ++ R +D+RVGDRV+V+RAG Sbjct: 410 RTGVITPVARLEPVAVGGVTVTNATLHN--FL-------ELAR--KDVRVGDRVIVRRAG 458 Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 +VIP+VV +I E H + P CP+C + R+ A RC+GGL C AQ Sbjct: 459 DVIPEVVRVIPRESHGALAVYKEPVACPVCGAPTEREGGET------ALRCSGGLTCRAQ 512 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527 E +KHF SR A NIEGLG + + ++ RI +D++ L ++Q + + Sbjct: 513 VKEGVKHFASRKAMNIEGLGDKLVALLMQA---GLVERI-SDLYRLHEQRQV----LVGL 564 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 G SV NL ++I + + S RF+F LGIR VG +A SLA ++ S ++ + Sbjct: 565 ERLGGKSVANLLEAIEQSKAQSAARFLFGLGIRDVGVTLAGSLAAHFTS-------LDAL 617 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEKN-- 642 +A +D L+ + VG+++A+ +V F+ + + A+ AL + R E + Sbjct: 618 MAATVED---LVGIEDVGEVVARRVVHFFAQAHHGAELAALRALGVAAAGEPWRVEPDGH 674 Query: 643 ----VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 + +V TGTL + R A + LGA V A +S KT ++ G++ GSKL Sbjct: 675 GVAAAEQPLSGLSVVLTGTLAGLTREAAAVRLEGLGAKVVASVSGKTGCLVCGESAGSKL 734 Query: 699 EKAQQLGVKIMNE 711 KAQ+ GV +++E Sbjct: 735 AKAQKAGVPVLDE 747 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 3/93 (3%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + L + ++++ Y+ ++ D+EYD L R ++ A P L ++ P +++GG Sbjct: 7 AELRKRLNHYAHSYHTLDTSLVSDAEYDRLFRELQSLEAADPTLISADSPT---HRVGGA 63 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114 + KV H + LSL+ ++ +DL +F R+ Sbjct: 64 ILEGFEKVRHRVAMLSLDNAFSAQDLVEFHRRV 96 >gi|218248171|ref|YP_002373542.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 8801] gi|254781307|sp|B7K0A2|DNLJ_CYAP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218168649|gb|ACK67386.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8801] Length = 674 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 227/697 (32%), Positives = 371/697 (53%), Gaps = 61/697 (8%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY PI+ DS YD L R + +P L P+ P ++G + + H+I Sbjct: 25 AYYVLDNPIMEDSVYDQLYRELQDLESQYPILI---TPDSPTQRVGDQPAAQFNSIRHNI 81 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P SLE +N+++L+K+ R R+ Q + + + E KIDG+ + + YE G + Sbjct: 82 PLYSLENAFNLQELQKWEERWQRYDQVSNSD---YVCELKIDGSALALTYEDGILIRGVT 138 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG +GE+++ +R I +IP L+L N P +E+RGE ++ N+F LN E G Sbjct: 139 RGDGITGEEITQNVRTIRSIPLKLTLENPPSRVEIRGEAFLPLNEFDRLNGERKQAGEPL 198 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ ++ R L FF + L + Q+E L+ ++ +GF VN Sbjct: 199 FANPRNAAAGTLRQLDSKVVSERRLQFFAYTLHLPEDNSLSSQWESLEWLKKMGFLVNPN 258 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + T + Y+ ++ R LPY DG+V K+++++LQ QLG + PRW I+ K+ Sbjct: 259 CQLCPTLEAVADYFRHWETARHDLPYMTDGVVVKINDYALQNQLGFTQKFPRWAIALKYP 318 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++A TR+ +I + +GRTG +TP+A +EPV++GG ++ ATLHN D + L Sbjct: 319 AEEAPTRVKEIIVNVGRTGAVTPMAIMEPVHLGGTIVQRATLHNSDRVSEL--------- 369 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 DIRVGD V++++AGE+IP+V+ ++ R P+++P+ PS CP C S +VR + Sbjct: 370 --DIRVGDTVIIRKAGEIIPEVLRVLPELRLPNSRPYQMPSHCPECGSTLVRPVGE---- 423 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC +C A + H+ SRDA +I GLG++ + ++E I AD++ Sbjct: 424 --AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKIVSLLVENE----LITSIADLY 476 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 Q + K+ + G S L ++I + S R ++ LGIR+VG A+ L Sbjct: 477 ------QLTPEKVAALDRMGTKSAQKLINAIEGSKRQSWPRVLYGLGIRYVGNVTAKLLT 530 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + S + +Q +A V VG+ IAQ++ ++++ N +E L Sbjct: 531 DNFPSVEVLSQASVPTLAS----------VYGVGEEIAQSVFDWFKIVENQTLIEQL--- 577 Query: 632 VSPSIGRHEKNVSSE----------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 G +N++S+ I K V TGTL ++R++A+ + + G V+ + Sbjct: 578 --KIAGLQLENIASQAVSLTPSSGNIAGKTFVLTGTLPTLKRNEAKALIEKAGGKVTGSI 635 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S KTD ++VG+ GSKL KAQ+LG+ ++E L L Sbjct: 636 SSKTDYLVVGEEAGSKLAKAQELGITQLSEADLLKFL 672 >gi|330973309|gb|EGH73375.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 670 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 218/623 (34%), Positives = 338/623 (54%), Gaps = 50/623 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTLEPKIDGT 137 + +V H +P LSL + D+ +F R+ + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGGKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ P+++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + +G K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L+ ++ G PV+ ++ AN ++YY ++ R L Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L + +GD V+++RAG+VIP+VV ++ R +A+ P C Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415 Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S V R + GK A +RC G LAC AQ + + H+VSR A +IEGLG Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + I PAD++ L+ Q I ++ GF ++S L ++I R Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLNAIADSRQP 525 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGI VG E A+ LA+ S + Q + ++ + +P VG + Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 575 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 576 AYEIHSFFEDEHNRSVIDALLGE 598 >gi|325681379|ref|ZP_08160905.1| DNA ligase (NAD+) [Ruminococcus albus 8] gi|324106869|gb|EGC01159.1| DNA ligase (NAD+) [Ruminococcus albus 8] Length = 665 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 224/712 (31%), Positives = 379/712 (53%), Gaps = 52/712 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 IE + A+K + L ++YH YY + I D +YD ++ + +P+ R Sbjct: 5 IEMADKDNAKKRIDELVATLNYHAHLYYVEDRNEISDYDYDMMQNELKKLEAQYPEFIR- 63 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P ++GG+ KV H + SL+ +++ E +R+F+ R+ + DD F Sbjct: 64 --PDSPTQRVGGKAVSRFEKVQHKVQMGSLQDVFSFEGVREFVDRV---RETVDDPK--F 116 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +EPKIDG +++ Y G+ + RGDG GE+V+ +R + +IP + +P ++EVR Sbjct: 117 VVEPKIDGLSVSLEYHDGQLTVGSTRGDGFVGENVTENLRTVRSIPVSIDSTLP-MLEVR 175 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ ++ FL L E +P+ NPRNAA+G LR+ NP R L+ FV + + Sbjct: 176 GEVYMPRSVFLKLVKEQEDNDEQPFKNPRNAAAGSLRQKNPKIAAKRKLDIFVFNVQQVE 235 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + L ++ LGF R +T I++ E+ R LPYDIDG+V KVD Sbjct: 236 GKELTAHKQSLDYLKELGFKTVPDYRLVSTADEIIARIGEIGESRFELPYDIDGVVIKVD 295 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +FS ++++G A+ P+W +++KF ++ +T+LLDI++ +GRTG +TPVA EPV + G Sbjct: 296 DFSQRERIGSTAKDPKWAVAYKFPPEEKNTKLLDIELNVGRTGAVTPVAIFEPVFLAGTQ 355 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN+D I ++I +GD + V++AG++IP+V+ ++ E++ D Sbjct: 356 VSRATLHNQDLIN-----------EKNINIGDIIKVRKAGDIIPEVLGVV--EKNSDG-A 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F+ P CP+C+++++R AA RC + C AQ + HF S+ A NI+GLG Sbjct: 402 FTLPDECPVCKTKLIRSEEE------AAVRCP-NVECPAQIFRSIVHFASKGAMNIDGLG 454 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 Q + D + AD++ + + K+ + F + S NL +I K ++ Sbjct: 455 PQIVRVLL---DKGLITSV-ADLYHI------TEEKLLELDNFKEKSAHNLVTAIEKSKS 504 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL+R IF LGIR +G A+ L + + + IA + GDI Sbjct: 505 NSLDRLIFGLGIRGIGQASAKLLCAKFGGIDSIMRATAAEIAE----------IEGFGDI 554 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A ++ + + ++ LK+ + + E K V TGTL ++R++A+ Sbjct: 555 MADSVYSAFHEEHMLSLIQR-LKDCGVNTDYEKVQQDDRFEGKTFVLTGTLPTLKRNEAK 613 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E + + G S +S+KTD ++ G+ GSKL KA+QLG+KI+ EE+F+ +++ Sbjct: 614 ELIEKFGGKASGSVSKKTDYVLAGEEAGSKLTKAEQLGIKIITEEEFMEMIK 665 >gi|302185110|ref|ZP_07261783.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae 642] Length = 787 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 218/623 (34%), Positives = 338/623 (54%), Gaps = 50/623 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAQLDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTLEPKIDGT 137 + +V H +P LSL + D+ +F R+ + + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ PE++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPEVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + +G K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSADIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L+ ++ G PV+ ++ AN ++YY ++ R L Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLETLKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L + +GD V+++RAG+VIP+VV ++ R +A+ P C Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENAKAVHVPQTC 415 Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S V R + GK A +RC G LAC AQ + + H+VSR A +IEGLG Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + I PAD++ L+ Q I ++ GF ++S L +I R Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGI VG E A+ LA+ S + Q + ++ + +P VG + Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 575 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + + II+ DWL + + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQT--LPE 663 Query: 607 IIAQAIVEFYQN---PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ + A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDSVHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L Sbjct: 720 ERMSRDIAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779 Query: 719 QQYNTTL 725 + + Sbjct: 780 TELGVAV 786 >gi|257060505|ref|YP_003138393.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802] gi|256590671|gb|ACV01558.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802] Length = 674 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 224/693 (32%), Positives = 369/693 (53%), Gaps = 53/693 (7%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY PI+ DS YD L R + +P L P+ P ++G + + H+I Sbjct: 25 AYYVLDNPIMEDSVYDQLYRELQDLESQYPILI---TPDSPTQRVGDQPAAQFNSIRHNI 81 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P SLE +N+++L+K+ R R+ Q + + + E KIDG+ + + YE G + Sbjct: 82 PLYSLENAFNLQELQKWEERWQRYDQVSNSD---YVCELKIDGSALALTYENGILIRGVT 138 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG +GE+++ +R I +IP L+L N P +E+RGE ++ N+F LN E G Sbjct: 139 RGDGITGEEITQNVRTIRSIPLKLTLENPPSRVEIRGEAFLPLNEFDRLNGERKQAGEPL 198 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ ++ R L FF + L + Q+E L+ ++ +GF VN Sbjct: 199 FANPRNAAAGTLRQLDSKVVSERRLQFFAYTLHLPEDNSLSSQWESLEWLKKMGFLVNPN 258 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + T + Y+ ++ R LPY DG+V K+++++LQ QLG + PRW I+ K+ Sbjct: 259 CQLCPTLEAVADYFCHWETTRHDLPYMTDGVVVKINDYALQNQLGFTQKFPRWAIALKYP 318 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++A TR+ +I + +GRTG +TP+A +EPV++GG ++ ATLHN D + L Sbjct: 319 AEEAPTRVKEIIVNVGRTGAVTPMAIMEPVHLGGTIVQRATLHNRDRVSEL--------- 369 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 DIRVGD V++++AGE+IP+V+ ++ R P++QP+ PS CP C S +VR + Sbjct: 370 --DIRVGDTVIIRKAGEIIPEVLRVLPELRLPNSQPYQMPSHCPECGSTLVRPVGE---- 423 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC +C A + H+ SRDA +I GLG++ + ++ I Sbjct: 424 --AVTRCVNS-SCPAILRGSVVHWASRDALDIRGLGEKIVSLLVEN----------GLIT 470 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 ++ Q + K+ + G S L ++I ++ S R ++ LGIR+VG A+ L Sbjct: 471 SITDLYQLTPEKVAALDRMGTKSAQKLINAIEGSKHQSWSRVLYGLGIRYVGNVTAKLLT 530 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL--- 628 + S + +Q +A V VG+ IAQ++ ++++ N +E L Sbjct: 531 DNFPSVEVLSQASVPTLAS----------VYGVGEEIAQSVFDWFKIAENQTLIEQLKIA 580 Query: 629 ---LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L+ ++ S S ++ K V TGTL ++R++A+ + + G V+ +S KT Sbjct: 581 GLQLENIA-SQAVSLTAASEKVAGKTFVLTGTLPTLKRNEAKALIEKAGGKVTGSISSKT 639 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 D ++VG+ GSKL KAQ+LG+ ++E L L Sbjct: 640 DYLVVGEEAGSKLAKAQELGITQLSEADLLKFL 672 >gi|305667253|ref|YP_003863540.1| DNA ligase [Maribacter sp. HTCC2170] gi|88708187|gb|EAR00425.1| DNA ligase [Maribacter sp. HTCC2170] Length = 664 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 235/707 (33%), Positives = 373/707 (52%), Gaps = 52/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+++ +L E+ H+ YY P I D ++D + + P+ D P + Sbjct: 4 RQKIEALRAELREHNHNYYVLDNPTISDYDFDMKLKELQELEAKHPEFY---DATSPTLR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ + + H SL+ ++ EDL + RI R D + FT E K DG Sbjct: 61 VGGDITKNFNTIVHEHRMYSLDNSYSKEDLEDWEKRIQRIL---GDAEVEFTCELKYDGA 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE GK A RGDG G++V+A I+ I ++P L + P ++RGE+ + + Sbjct: 118 SISLTYEDGKLSKAVTRGDGFQGDEVTANIKTIRSVPLQLKGDYPPKFDIRGEIILPLDG 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-GKTSEIFAKGQY 255 F +N E +A G PY NPRN ASG L+ + + R L+ ++G+ G + I + QY Sbjct: 178 FEKMNQERVAAGEDPYMNPRNTASGSLKLQDSAAVAQRPLDCLLYGIVGPNTGITS--QY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 EML+K R GF V + + T ++++ R LPY+ DG+V KV+ Q +L Sbjct: 236 EMLEKSRDWGFKVPSIAQLCKTIDEVMAFVEYWDVHRHDLPYETDGVVIKVNSLQHQDEL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++SPRW +++KF +Q ST L +I Q+GRTG +TPVA LEPV + G + A+LHN Sbjct: 296 GYTSKSPRWAMAYKFKAEQVSTVLNEITYQVGRTGAITPVANLEPVLLAGTTVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L DIR D V V++ GE+IPK++ + + +R D++P + + CP Sbjct: 356 ADQIEKL-----------DIRERDTVFVEKGGEIIPKIIGVDIPKRPADSEPIKYITLCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C++ +VR A H CT C Q R++HF+SR A +IEGLG + ++ F Sbjct: 405 ECETELVRTEGD------AKHYCTNFYGCPTQITGRIQHFISRKAMDIEGLGGETVELLF 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 K IR AD++ L + Q I + + S NL + I ER +F Sbjct: 459 KEG----LIRNYADLYILTKEQ------IMPLERMAEKSAENLVKGVADSTTIPFERVLF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ LAK Y + I+ ++A ++++ LI V +G+ IAQ++VEF Sbjct: 509 ALGIRFVGETVAKKLAKAY-------KNIDALMAASSEE---LIAVDEIGERIAQSVVEF 558 Query: 616 YQNPRNICAVEALLKE--VSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQ 672 +QN RN+ + A LK V I + +EI + K V +G + I R+ ++ + Sbjct: 559 FQNERNLDNI-ARLKSYGVQFEISADKLLNQTEILKGKTFVVSGVFETISRNDLKKLIED 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G V + +S KT ++ GD G SK KA++L + I+ E+ FL ++ Sbjct: 618 NGGKVGSSISSKTSFLVAGDKMGPSKRTKAEKLDIPIITEQDFLNMV 664 >gi|186680717|ref|YP_001863913.1| NAD-dependent DNA ligase LigA [Nostoc punctiforme PCC 73102] gi|254781381|sp|B2J3P0|DNLJ_NOSP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|186463169|gb|ACC78970.1| DNA ligase, NAD-dependent [Nostoc punctiforme PCC 73102] Length = 678 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 239/713 (33%), Positives = 379/713 (53%), Gaps = 57/713 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL L Q+ SY YY PI+ DS YD L R + +P+L P+ P ++ Sbjct: 12 EELRQLLQQASY---AYYVLDTPIMEDSVYDQLYRELQQLEIQYPELTA---PDSPTQRV 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G V H+IP SLE +NI++L+ + R R K D S+ + E KIDG+ Sbjct: 66 GERPATQFTSVRHNIPLYSLENAFNIDELQGWDQRWRRQVPKID--SVEYVTELKIDGSA 123 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISK 195 + + Y+ G V RGDG GED++ +R I +IP L+ L I E +EVRGE ++ Sbjct: 124 LALTYQDGILVRGTTRGDGVMGEDITQNVRTIRSIPLRLNFEGLEILERVEVRGEAFLPL 183 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF---VHGLGKTSEIFA 251 F +N+E G + +ANPRNAA+G LR+L+ + R L FF +H G+ A Sbjct: 184 EVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVAKRRLAFFGYTLHIPGRDDTSIA 243 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q+E L+ + +GF VN + + + YY + R LPY DG+V K++ F L Sbjct: 244 NTQWEALELLEKMGFQVNPNHKLCASIAEVAKYYEYWDTERLNLPYMTDGVVVKLNSFKL 303 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG + PRW I+ K+ ++A TR+ +I + +GRTG LTP+A + PV + G ++ A Sbjct: 304 QEQLGFTQKFPRWAIALKYPAEEAPTRVENIAVNVGRTGALTPLAEMRPVQLAGTTVSRA 363 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I L DIR+GD V+V++AGE+IP+VV ++ R + +PF P Sbjct: 364 TLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVLKELRPAETEPFVMP 412 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP+C VVR+ +G+ A RC +C+A ++H+VSRDA +I+GLG++ + Sbjct: 413 THCPVCDQAVVRE----SGE--AVTRCVNA-SCAAILKGSIEHWVSRDALDIKGLGEKLV 465 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + AD++ L + K+ + G S L D+I + +N Sbjct: 466 HQLVDK----VLVHSVADLYEL------TAEKLCALERMGQKSAEKLVDAIAQSKNQPWS 515 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++ LGIRHVG+ A+ L + Y + + A A +D + + +G IAQ+ Sbjct: 516 RVLYGLGIRHVGSVNAQLLTQKYFTVEQLA------TAKQSD----IEGIYGIGAEIAQS 565 Query: 612 IVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + ++++ N +E L L+ +P + + + K V TGTL ++R +A+ Sbjct: 566 VYQWFRIDANQRLIERLQAEGLQLTAPEETKAFGDGNQIFAGKTFVVTGTLPTLKRDEAK 625 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + G V+ +S+KTD ++VG++ GSKLEKA LG+ ++E Q L +L + Sbjct: 626 ALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLEKALSLGITQLSEAQLLEMLNE 678 >gi|262203140|ref|YP_003274348.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247] gi|262086487|gb|ACY22455.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247] Length = 691 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 235/711 (33%), Positives = 368/711 (51%), Gaps = 50/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ S+L EI H YY P+I D E+DAL RR + A P+LA P+ P Sbjct: 15 REQWSTLADEIREHQFRYYVKDSPVITDGEFDALLRRLQDLEDAHPELAA---PDSPTKL 71 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + + V H +SL+ +++ +++R ++ R+ S+ F E KIDG Sbjct: 72 VGGGFSTAFTPVDHLERMMSLDNVFDYDEMRTWVERV----NADAGTSVEFLCELKIDGV 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 + + YEKG V RGDG +GEDV+ R I +P+ L+ + IP+++EVRGEV+ Sbjct: 128 ALALVYEKGVLVRGVTRGDGRTGEDVTLNARTIDDVPQRLTASDEYPIPDVLEVRGEVFF 187 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFA 251 DF ALN ++A G+ P+ANPRN+A+G LR+ NP IT R L HG+G T Sbjct: 188 RVEDFEALNASLVADGKAPFANPRNSAAGSLRQKNPQ-ITARRRLRMICHGIGHTEGWRP 246 Query: 252 KGQYEMLQKMRCLGFPVNN---GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ + G PV+ V A+ + Y+ E R + ++IDG+V K D+ Sbjct: 247 ASLHDAYLALGAWGLPVSTHTTKVPGADEILEKIGYWGEH---RHDVEHEIDGIVVKADD 303 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 S+Q++LG +R+PRW I++K+ ++A+T LLDI + +GRTG +TP A L PV + G+ + Sbjct: 304 VSVQRRLGATSRAPRWAIAYKYPPEEATTELLDIQVGVGRTGRVTPFAVLAPVLVAGSTV 363 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHNE +K R G + +GD V +++AG+VIP+V+ +V+ R + F Sbjct: 364 SRATLHNESEVK---------RKG--VLIGDTVTIRKAGDVIPEVLGPVVDLRDGTERAF 412 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C + L P+ V RC C AQ ERL H R +F+IE LG Sbjct: 413 VMPDRCPECGA----PLRPEKDSDVDI-RCPNQETCPAQLRERLFHLAGRGSFDIEALGY 467 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ I D+F+L T G + L ++ + + Sbjct: 468 EAATALLNAK----VITNEGDLFSLTADDLARTDLFTTKAGALSANGKRLLANLENAKQV 523 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L R + L IRHVG AR+L A E ++ A + D L V +G + Sbjct: 524 PLWRVLVGLSIRHVGPTAARAL----------ATEFGSLNAIEDADVEQLAGVEGLGMTL 573 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 AQ+I +++ + VE + ++ +E K +V TG+L+ R A+E Sbjct: 574 AQSIHDWFAVDWHREIVEKWRAAGVSMEDERDDSIVRTLEGKTIVVTGSLEDFSRDGAKE 633 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + Q G S +S+KTD +++G++PGSK KA+QLGV +++E+ F LL+ Sbjct: 634 AILQRGGKASGSVSKKTDYVVIGESPGSKAAKAEQLGVPVLDEDAFKRLLE 684 >gi|330986172|gb|EGH84275.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans str. M301315] Length = 787 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 219/623 (35%), Positives = 337/623 (54%), Gaps = 50/623 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137 + +V H +P LSL + D+ +F R+ + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEESDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ P+++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + +G K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L+ ++ G PV++ ++ AN + YY ++ R TL Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLETLKKWGMPVSHELKLANGVEDCLDYYRDIGERRLTLSYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L + +GD V+++RAG+VIP+VV ++ R +A+ P C Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415 Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S V R + GK A +RC G LAC AQ + + H+VSR A +IEGLG Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + I PAD++ L+ Q I ++ GF ++S L +I R Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGI VG E A+ LA+ S Q + ++ + +P VG + Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLEV 575 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + + II+ DWL + + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQT--LPE 663 Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ + + A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779 Query: 719 QQYNTTL 725 + T+ Sbjct: 780 TELGVTV 786 >gi|254882009|ref|ZP_05254719.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA] gi|254834802|gb|EET15111.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA] Length = 665 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 242/710 (34%), Positives = 372/710 (52%), Gaps = 62/710 (8%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +E+ H+ YY + P I D E+D L R + P+ D N P ++G Sbjct: 7 IDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPE---HRDENSPSMRVGS 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMI 139 ++N + +V H P LSL ++ ++ +F R+ KK N F E K DGT I Sbjct: 64 DINKNFTQVVHKYPMLSLANTYSETEVTEFYDRV-----KKSLNEDFEICCEMKYDGTSI 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198 ++ YE GK V A RGDG G+DV+ ++ I +IP VL PE E+RGE+ + F Sbjct: 119 SLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPETFEIRGEILMPWVVF 178 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEM 257 LN E A +ANPRNAASG L+ N + +R L+ +++ L + G YE Sbjct: 179 EELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L++ GF +++ R+ T + + R LP DG+V KV+ Q+ LG Sbjct: 238 LKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGF 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA TRL + Q+GRTG +TPVA L+P+ + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+GL D+ +GD V V++ GE+IPK+V + + R F + CP C Sbjct: 358 IIEGL-----------DLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR G+ AA+ CT AC Q +++HF+SR A NI+GLG + +D F++ Sbjct: 407 GSKLVR----YEGE--AAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 IR AD++TL+ T+ I N+ G+ S N+ I + + + ER +F+L Sbjct: 461 G----LIRDVADLYTLK------TSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 GIR VG +A+ +AK + S A ++N LI V +G+ IAQ+I+ ++ Sbjct: 511 GIRFVGETVAKKVAKSFKSMDALADASLDN-----------LIHVDEIGEKIAQSILLYF 559 Query: 617 QNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 NP+N +E L L+ H ++ E +V +G R + +E + Sbjct: 560 ANPKNRDIIERLRVAGVRLEADEEDTSEHTDKLAGE----SIVISGVFAHHSRDEYKELI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + G +S KT I+ GDN G SKLEKAQ+LGV I++EE+FL +++ Sbjct: 616 EKHGGKNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEFLQMIE 665 >gi|309378943|emb|CBX22396.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 827 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 267/839 (31%), Positives = 414/839 (49%), Gaps = 170/839 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P + D+EYD L R +A+ P+L + P+ P ++G Sbjct: 18 ELTDLLNRYAYE---YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVG 71 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F ++ + + +EPK Sbjct: 72 GEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRNGLNGEQPEYVIEPK 131 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV Sbjct: 132 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 191 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K DF ALN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F Sbjct: 192 MLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGF 250 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ + L + LGF + +G F I +++Y +M+ R LPY+IDG+V KV Sbjct: 251 VAEAHIQELAYFQELGFSLPDG--NFGCFKNIGEVLAFYGQMQQKRPELPYEIDGMVVKV 308 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 309 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 368 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D +V R +D+R+GD V+V+RAG+VIP+VV +I R Sbjct: 369 TVTNATLHNQD---------EVSR--KDVRIGDTVVVRRAGDVIPEVVRVIFERRPMQET 417 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 418 AVAVSDGIGHRQDDLFAETPSAGQTRSVPLHKPYRLPTRCPICRSEIERE----EGEAVA 473 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 474 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLD 527 Query: 512 --TLQRRQQTS-TTKIENILGFGDVS---------------VTNLYDSINKRRNISLERF 553 TLQ+ ++T+ T E+ +VS N+ I + L RF Sbjct: 528 IPTLQKMKETADKTVAESEQMPSEVSSVGASGKHKKQPVKWAENILGGIESGKTPELARF 587 Query: 554 IFSLGIRH--------------------------------VGAEIARSLAKYYLSYQNFA 581 +F+LGIRH +G +A S+A ++ + A Sbjct: 588 LFALGIRHVGERTAKTLAQAFGTLERVRRAPEPILACLPDIGTVVAHSIAHFFAQAEQQA 647 Query: 582 --------------QEINNIIAHNNDDWLSLIRVP--LVGDIIAQAIVEF---------- 615 Q ++ +A + + R+P + + AQA+ E Sbjct: 648 MIDELLAAGVAPQAQAVSLPVAQYAEPQRWIARLPGFKISENKAQALWELAGQSIKGLQN 707 Query: 616 -------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQ 659 +Q R+ LL+ + PS + ++ + K V TGTL Sbjct: 708 DKALPADWQAWRSETQNAVLLENLKTFFAQMPSEDETAQGSDGINEAVAGKTFVLTGTLP 767 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 768 TLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 826 >gi|295426520|ref|ZP_06819170.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM 11664] gi|295063888|gb|EFG54846.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM 11664] Length = 669 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 232/715 (32%), Positives = 391/715 (54%), Gaps = 68/715 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++++QA+ E+++L +++ + YY P + D+ YD R + FP+L P Sbjct: 4 ITLDQAKTEVAALRKQLDEWAEAYYSKDAPEVEDNVYDQKYNRLLELEKDFPELVT---P 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG+++ KV H IP LS+ +++ E+LR+F RI QK+ + + + +E Sbjct: 61 DSITQRVGGKIDTKFTKVAHPIPMLSMGDVFSKEELREFDQRI----QKQVGHPVAYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y+ G+ + A+ RG+G GEDV+A R I IP+ +L P IEVRGE Sbjct: 117 LKIDGLSLSLEYQNGRLMRASTRGNGQVGEDVTANARFIRDIPQ--TLPKPLTIEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+SK F LN E G++ +ANPRNAA+G LR+L+ +T R L+ F++ E Sbjct: 175 YMSKEAFAKLNAERDENGKEVFANPRNAAAGSLRQLD-AKVTKKRDLSTFIYTWVNPPEG 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ +++M LGF N R+ T I + +E + R +LPY IDG+V KVD+ Sbjct: 234 IT-SQHQAIEEMHKLGFHTNQTGRKLETLDEIFDFIDEYTAKRDSLPYCIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++++LG + PRW I++KF ++ T + DI+ +GRTG++TP A ++PV + G + Sbjct: 293 GIEQELGSTVKVPRWEIAYKFPPEEQETVVRDIEWTVGRTGVVTPTAVMDPVQLAGTTVA 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A LHN D +K +D+R+GD V + +AG++IP++ ++++++R D++P+ Sbjct: 353 RAVLHNPDLLK-----------EKDVRIGDTVKLHKAGDIIPEISEVVLSKRPADSKPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C ++V K A RC +C AQ E + HF SR A NI GLG + Sbjct: 402 IPTTCPSCGQKLVH------LKGEVALRCINP-SCPAQLEEGIIHFASRQAMNIAGLGPK 454 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + ++D ++ AD++ L + + + F + S+ NL +I+K + S Sbjct: 455 IVKQLI-AKDLVHNV---ADLYHL------TPDDLMQLDHFKEKSINNLLTAIDKSKQNS 504 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +E + LGI HVGA++AR + +Q+ N+ D + + +G IA Sbjct: 505 VELLLTGLGIDHVGAKVARLI----------SQKFKNLPKIMAADVQEVAAIDTIGPTIA 554 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEI-----ENKKLVFTGTL 658 +++ ++ P AV+ L++E+ S +G+ E +EI +NK +V TG L Sbjct: 555 ESLTTYFAQP----AVQKLIEELEESGLNMDYLGQDE--TEAEIADNFFKNKTVVLTGKL 608 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 R + + + LGA V+ +S KTD +I G + GSK KAQ LGV + EE+ Sbjct: 609 AHYTRSEFTKRLQSLGAKVTGSVSHKTDYVIYGKDAGSKFTKAQSLGVPTLTEEE 663 >gi|308176651|ref|YP_003916057.1| DNA ligase [Arthrobacter arilaitensis Re117] gi|307744114|emb|CBT75086.1| DNA ligase [Arthrobacter arilaitensis Re117] Length = 767 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 241/767 (31%), Positives = 391/767 (50%), Gaps = 72/767 (9%) Query: 1 MKKRQLIPIEALSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 + ++ + P+E ++ E + L ++I H D YYQ P++ D EYDAL + Sbjct: 10 VSEKDVAPVETTNVPPEADKTRYDQLVEQIRAHRDAYYQNDAPLVSDVEYDALFHELQLL 69 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 +P LA + P ++GGE++ + VTH+ SLE ++++++L ++ R Sbjct: 70 EATYPILAGQDSPT---QEVGGEVSAAFASVTHASRMYSLEDVFSLDELEAWLERAQANA 126 Query: 119 QK-KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177 ++ + + E KIDG + + Y GK V AA RGDG +GEDV+ I IP+ L Sbjct: 127 ERLHPQTPVRWLCEVKIDGLALNLTYRDGKLVRAATRGDGTTGEDVTHNALTISDIPQQL 186 Query: 178 -SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235 P EVRGEV+I+ DF N+ +IA G+ P ANPRNAA+G LR+ +P R Sbjct: 187 EGSGWPAEFEVRGEVFIATEDFNKFNEALIAQGKAPLANPRNAAAGSLRQKDPAQTAKRP 246 Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 L FVHGLG++ + Q + + MR G PV+ R ++ Y E R L Sbjct: 247 LRMFVHGLGRSRDFKLTEQSQAYELMRGWGLPVSPYGRVVDSRQAAKDYIAEHGEKRHDL 306 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 +DIDG+V KVD+ + Q+QLG +R PRW +++K+ ++ T+LLDI +Q+GRTG +TP Sbjct: 307 IHDIDGIVIKVDDLATQEQLGYTSRVPRWAVAYKYPPEEVHTKLLDIQVQVGRTGRVTPF 366 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 +EPV + G+ + ATLHN++ +K +++++GD +++++AG+VIP++V Sbjct: 367 GVMEPVLVAGSTVARATLHNQEVVK-----------AKNVKIGDTIILRKAGDVIPEIVG 415 Query: 416 II--VNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERL 472 + + E + + + F P+ CP C + L P K G + RC +C AQ ER+ Sbjct: 416 PVLPLREGNDELRDFIMPTECPSCG----QPLAPAKEGDVDI--RCLNAESCPAQLTERV 469 Query: 473 KHFVSRDAFNIEGLGKQQLDFFFK--SEDPAF--SIRIP---------ADIFTL------ 513 + R A +IE LG + EDPA I +P A++F L Sbjct: 470 AYLGGRSALDIEALGYEAAAALTSGPGEDPATLGGIILPAGPGPLKNEAELFNLKDKLEE 529 Query: 514 ---------QRRQQTSTTKIENILGF-----------GDVSVTNLYDSINKRRNISLERF 553 +R + T K E + F S L D + K ++ L R Sbjct: 530 LGEVKVWREKRVKGEGTGKFELVPYFYSKATAKKPSAPTKSTMKLLDELEKAKDNPLWRV 589 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + +L IRHVG +R++A Y S + +++ A L + VG IIA+A+V Sbjct: 590 LVALSIRHVGPNASRAIATRYGSMDALLEVLDSGNAEAE-----LSEIDSVGSIIAEALV 644 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ++++ + V + ++N++ +E +V TGTL+ R A+E + Sbjct: 645 DWFKVDWHREIVASWQAAGVKMQDEQDENITKNLEGLAIVVTGTLENYSRDTAKEAIIVR 704 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G + +S+KTD ++ G+ GSKL+KAQ LGV +++E F LL+Q Sbjct: 705 GGKATGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEAGFGVLLEQ 751 >gi|71737941|ref|YP_274013.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. phaseolicola 1448A] gi|123775130|sp|Q48KR2|DNLJ_PSE14 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71558494|gb|AAZ37705.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. phaseolicola 1448A] gi|320329466|gb|EFW85458.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea str. race 4] Length = 787 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 219/623 (35%), Positives = 337/623 (54%), Gaps = 50/623 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137 + +V H +P LSL + D+ +F R+ + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ P+++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + +G K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L+ ++ G PV++ ++ AN + YY ++ R TL Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L + +GD V+++RAG+VIP+VV ++ R +A+ P C Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415 Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S V R + GK A +RC G LAC AQ + + H+VSR A +IEGLG Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + I PAD++ L+ Q I ++ GF ++S L +I R Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGI VG E A+ LA+ S Q + ++ + +P VG + Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLEV 575 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + + II+ DWL + + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQT--LPE 663 Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ + + A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779 Query: 719 QQYNTTL 725 + + Sbjct: 780 TELGVAV 786 >gi|330444629|ref|YP_004377615.1| DNA ligase [Chlamydophila pecorum E58] gi|328807739|gb|AEB41912.1| DNA ligase, NAD-dependent [Chlamydophila pecorum E58] Length = 666 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 238/702 (33%), Positives = 384/702 (54%), Gaps = 56/702 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L QE+ HD YY P+I D +YD R I P+ P P ++G + Sbjct: 17 LCQELEKHDYQYYVLHAPLISDYDYDMKMRELQLIEKQHPEW---RVPWSPTLRLGDRPS 73 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 L V H P LS+ ++ E+L +F +R+ +K + ++T+E KIDG + IRY Sbjct: 74 GELEIVDHKYPMLSIANGYSEEELEEFFSRV----EKSLGHVPYYTIELKIDGIAVAIRY 129 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 E V A RG+G GED++ IR I +P L PE +EVRGEV+ + F +N Sbjct: 130 EDRILVQAMSRGNGKQGEDITTNIRTIRALPLRLPEESPEFLEVRGEVFFKRAVFDEINA 189 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262 + A+ + +ANPRNAA G L+ L+ + R L ++ + +E + + L+ R Sbjct: 190 KQRALKKPEFANPRNAAGGTLKLLSAEKVAERKLEISIYSV--LAEELSDSHCDSLECCR 247 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 G V R + + + E+K +RS LP +IDG+V KVD Q+ LG + Sbjct: 248 QWGLSVQGMPRLCRSKEEVFVFLEEIKQLRSQLPMEIDGVVIKVDSIKDQQSLGSTGKHY 307 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 RW +++K+A +QA T L DI +Q+GRTG+LTPVA+L PV + G+LI+ A+L+NE+ I+ Sbjct: 308 RWALAYKYAPEQAETVLEDILVQVGRTGVLTPVAKLRPVFLSGSLISRASLYNEEEIR-- 365 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 +DIR+GD V++++ GEVIPKVV +++ +R D+Q + P CPIC VV Sbjct: 366 ---------RKDIRIGDTVVLEKGGEVIPKVVGVVLGKRPEDSQSWQMPEHCPICHGDVV 416 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 R+ N RC CS +E+++ F R A +IE LG++ ++ F D Sbjct: 417 REGNK------VCVRCMNP-TCSGGTIEKIRFFAGRSALDIEYLGEKVINKLF---DMGL 466 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 + +DIF+L +R + + GF + SVTN+ SI K +N+ L+RF+ +LGI +V Sbjct: 467 -LHSCSDIFSLTKRD------LLQVPGFREKSVTNILKSIEKAKNVFLDRFLVALGIPYV 519 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G +A SLA+++ S + +I+ + L+ + +GD +A +I E+++NP+++ Sbjct: 520 GIGVASSLAEHFGS-------LERVISASE---EELLEIEGIGDKVAVSIKEYFENPKHL 569 Query: 623 CAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 +E +L +V+PS SS + K V TG I R + + G VS+ Sbjct: 570 EEIEKMLDFGVKVAPS-----HKSSSICQGKTFVITGAFAGITRSDIERTIRNCGGKVSS 624 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 +S++TD ++VG++PGSKL+KAQ+LG+ +++++ +L Y Sbjct: 625 SVSKQTDYLVVGEDPGSKLKKAQELGIPLLDQDSLQKILYNY 666 >gi|313668860|ref|YP_004049144.1| DNA ligase [Neisseria lactamica ST-640] gi|313006322|emb|CBN87785.1| putative DNA ligase [Neisseria lactamica 020-06] Length = 827 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 267/839 (31%), Positives = 414/839 (49%), Gaps = 170/839 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P + D+EYD L R +A+ P+L + P+ P ++G Sbjct: 18 ELTDLLNRYAYE---YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVG 71 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F ++ + + +EPK Sbjct: 72 GEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRNGLNGEQPEYVIEPK 131 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV Sbjct: 132 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTRNVKTVANIPLRLHGENTPELIEVRGEVL 191 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K DF ALN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F Sbjct: 192 MLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGF 250 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A+ + L + LGF + +G F I +++Y +M+ R LPY+IDG+V KV Sbjct: 251 VAEAHIQELAYFQELGFSLPDG--NFGCFKNIGEVLAFYGQMQQKRPELPYEIDGMVVKV 308 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 309 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 368 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D +V R +D+R+GD V+V+RAG+VIP+VV +I R Sbjct: 369 TVTNATLHNQD---------EVSR--KDVRIGDTVVVRRAGDVIPEVVRVIFERRPMQET 417 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 418 AVAVSDGIGHRQDDLFAETPSAGQTRSVPLHKPYRLPTRCPICRSEIERE----EGEAVA 473 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 474 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLD 527 Query: 512 --TLQRRQQTS-TTKIENILGFGDVS---------------VTNLYDSINKRRNISLERF 553 TLQ+ ++T+ T E+ +VS N+ I + L RF Sbjct: 528 IPTLQKMKETADKTVAESDQMPSEVSSVGASGKHKKQPVKWAENILGGIESGKTPELARF 587 Query: 554 IFSLGIRH--------------------------------VGAEIARSLAKYYLSYQNFA 581 +F+LGIRH +G +A S+A ++ + A Sbjct: 588 LFALGIRHVGERTAKTLAQAFGTLERVRRAPEPILACLPDIGTVVAHSIAHFFAQAEQQA 647 Query: 582 --------------QEINNIIAHNNDDWLSLIRVP--LVGDIIAQAIVEF---------- 615 Q ++ +A + + R+P + + AQA+ E Sbjct: 648 MIDELLAAGVAPQAQAVSLPVAQYAEPQRWIARLPGFKISENKAQALWELAGQSIKGLQN 707 Query: 616 -------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTLQ 659 +Q R+ LL+ + PS + ++ + K V TGTL Sbjct: 708 DKALPADWQAWRSETQNAVLLENLKTFFAQMPSEDETAQGSDGINEAVAGKTFVLTGTLP 767 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 768 TLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 826 >gi|319789848|ref|YP_004151481.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1] gi|317114350|gb|ADU96840.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1] Length = 723 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 238/721 (33%), Positives = 380/721 (52%), Gaps = 57/721 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS E+AR+ L + I YHD YY + P+I D +YD L +A+ A P++ P Sbjct: 32 LSTEEARELAEKLRRVIRYHDYKYYVQANPVISDYQYDKLFHALEALEKAHPEVV---TP 88 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +I KV H SLE ++ EDL+++ ++ +++ + +E Sbjct: 89 DSPTQRISPAFTGEFQKVKHYAEMTSLENTYSPEDLKEWDRKVKELL---GTDTVEYIVE 145 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP--RVLSLNIPEIIEVRG 189 PK DG + + Y+ V A RGDG GED++ IR I +IP S + E+I +RG Sbjct: 146 PKFDGASVELVYKNDILVRGATRGDGIYGEDITVNIRTIKSIPLKAPFSKHGIELISIRG 205 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL----G 244 EV + K+ F LN+E G +ANPRNAA+G LR NP ++ R L+ +V+ + Sbjct: 206 EVIMPKSVFKKLNEEREKQGLTLFANPRNAAAGTLRLKNPAEVAKRGLDCYVYQILYSEP 265 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 K + Q E L+ + GF + ++ + R T ++ DG+V Sbjct: 266 KKLCTDIRTQKEALKLLAECGFKTPPIQKVCKNIEEVIETVLAAQEERETWDFEADGMVI 325 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ ++LGE PRW +++KF KQA T+L+D+ Q+GRTG LTPVA LEPV +G Sbjct: 326 KVNDICAWEKLGETLHHPRWAVAYKFPAKQAVTKLIDVVWQVGRTGALTPVAILEPVEVG 385 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++ ATL N D+IK +DIR+GD V+V+RAGE IP +V + + R D Sbjct: 386 GVIVSRATLFNPDFIK-----------SKDIRIGDYVIVERAGETIPYIVGPVKDRRKGD 434 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P P CP+C + +V++L+ A RC + C AQ E L ++ +I+ Sbjct: 435 EKPVEVPKHCPVCGAPIVKELDE------AVPRCP-NINCPAQLKEHLVYW--GKVLDIK 485 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG+ + K ++ AD++ L+R + + G+G NL + I K Sbjct: 486 GLGESTANVLTKK----GLVKSIADLYYLKRED------LLKLSGWGLKKSENLLNQIEK 535 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 ++ + + +LGIRHVG + A+ LAK + NI N D+ L +P + Sbjct: 536 SKSAPFWKKLTALGIRHVGEKTAQLLAKRF----------KNIEELMNADFTELASIPGI 585 Query: 605 GDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 G I A +I F++ +N+ + EA K E+ + +E +++VFTG L+ Sbjct: 586 GPITATSIQNFFKAEQNVEMIKKLQEAGFKFERTQEEEQEEKLPKPLEGQRIVFTGELEH 645 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R +AQ V LGA + +++KT ++VG+NPGSK +KAQ+LG+K++NE++F+ LL++ Sbjct: 646 FTRKEAQHVVELLGANPTNSVTKKTSFVVVGENPGSKFQKAQKLGIKMLNEKEFIELLKR 705 Query: 721 Y 721 Y Sbjct: 706 Y 706 >gi|229815888|ref|ZP_04446212.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM 13280] gi|229808583|gb|EEP44361.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM 13280] Length = 752 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 245/733 (33%), Positives = 371/733 (50%), Gaps = 76/733 (10%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L + YH YY P I D+ +D L I A P+L P+ ++GG ++ Sbjct: 50 LRHLLDYHAYRYYALDAPEITDAAFDKLLVELQQIEAAHPELVT---PDSYTQRVGGYVS 106 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 VTH S++ N+E+L +++ R + +T E KIDG + I Y Sbjct: 107 EQFTPVTHMARMYSMDDAMNLEELDEWLARTEEALGA---GRVAYTCELKIDGLGVAITY 163 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--------LNIPEIIEVRGEVYISK 195 + G FV AA RGDG +GEDVS +R I +P LS + IEVRGEVY+ K Sbjct: 164 QNGAFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEAALAHMGADRGTPIEVRGEVYMPK 223 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A GR+P+ANPRNAA+G LR+ +P TR L F++ + T+ + Q Sbjct: 224 GSFARLNAEADAEGREPFANPRNAAAGSLRQKDPKVTATRSLATFIYSIADTAPLHVDSQ 283 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + L +R GF VN V + + + ++ + + R L YDIDG+V KVD F Q Sbjct: 284 HAFLDWLREAGFSVNASVARCTSPAEVHAFCADALAHRGDLDYDIDGVVVKVDGFDQQAD 343 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW I+ KF ++ +T L +I IQ+GRTG+LTPVA +PV + G+ I ATLH Sbjct: 344 LGFTARAPRWAIAFKFPPEEKTTVLREIRIQVGRTGVLTPVAEFDPVTVAGSTIARATLH 403 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ +D+RVGD ++V +AG+VIP+VV ++++R DA + P C Sbjct: 404 NLDEIR-----------RKDVRVGDTIIVHKAGDVIPEVVGPMLDKRPADAVEWDMPEAC 452 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S VV + + A+RC L C AQ ERL H+VSR +++GLG + +D Sbjct: 453 PACGSPVVHEGDE------VAYRCV-SLDCPAQLKERLIHWVSRGCMDVDGLGDELIDKM 505 Query: 495 FKSEDPAFSIRIPADIFTLQ--------------RRQQTSTTKIENILGFGDVSVTNLYD 540 + A +R AD +TL + + + + G + D Sbjct: 506 IE----AGLLRDVADFYTLDASAIAALDTGRTYAKDDKKKGVAAGDPIKVGHTIAGKVMD 561 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 + + + L R +F+LGIRHVG +A LA+ +L+ I+ + A + +D + Sbjct: 562 ELVRSKAQPLSRVLFALGIRHVGKSVAEVLAQRFLT-------IDALAAASEED---IAA 611 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVE-------ALLKEVSPSIGR--HEKNVSSE----- 646 +G IA ++ EF N+ ++ AL + + ++ + E V ++ Sbjct: 612 CEGIGPKIAASVREFLSVSENLEVLQRLREAGLALEENLGAAVAQAAQETGVDADLAAGQ 671 Query: 647 -IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 ++ V TGTL R +A + LGA VS +S+KT ++ G GSKL KA+ LG Sbjct: 672 PLDGLAFVLTGTLVNRTRDEAGAALKLLGAKVSGSVSKKTSYLVAGPKAGSKLTKAESLG 731 Query: 706 VKIMNEEQFLFLL 718 V +++EE +L Sbjct: 732 VPVLDEEALERIL 744 >gi|330939980|gb|EGH43181.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. pisi str. 1704B] Length = 731 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 218/623 (34%), Positives = 338/623 (54%), Gaps = 50/623 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTLEPKIDGT 137 + +V H +P LSL + D+ +F R+ + + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ P+++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + +G K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L+ ++ G PV+ ++ AN ++YY ++ R L Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L + +GD V+++RAG+VIP+VV ++ R +A+ P C Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415 Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S V R + GK A +RC G LAC AQ + + H+VSR A +IEGLG Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + I PAD++ L+ Q I ++ GF ++S L +I R Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGI VG E A+ LA+ S + Q + ++ + +P VG + Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 575 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 576 AYEIHSFFEDEHNRSVIDALLGE 598 >gi|224025865|ref|ZP_03644231.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM 18228] gi|224019101|gb|EEF77099.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM 18228] Length = 665 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 236/705 (33%), Positives = 373/705 (52%), Gaps = 54/705 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +E+ H+ YY + P+I D E+D L R + P+ DP P ++G Sbjct: 7 IDQLREELHRHNHNYYILNAPVISDQEFDKLMRELQDLEARHPE---HFDPTSPSMRVGS 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMI 139 ++N +V H P LSL ++ +++ +F R+ +K N F E K DGT I Sbjct: 64 DINKDFVQVEHKYPMLSLGNTYSEDEVTEFYERV-----RKSLNEDFEICCEMKFDGTSI 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198 ++ YE G+ + A RGDG G+DV+ ++ I +IP VL P+ E+RGE+ + F Sbjct: 119 SLTYEDGRLIRAVTRGDGVRGDDVTDNVKTIRSIPLVLHGTGYPKSFEIRGEILMPWTVF 178 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 LN E +ANPRNAASG L+ N + R L+ +++ L + G YE Sbjct: 179 EELNRERELREEPLFANPRNAASGTLKSQNSAVVAARRLDAYLYYL-LGDNLPCDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ+ GF ++ R+ ++ I + R LP DG+V KV+ Q+ LG Sbjct: 238 LQEAEKWGFKISKITRKVHSLQEIFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGY 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF +QA TRLL + Q+GRTG +TPVA LEPV + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAEQALTRLLKVTYQVGRTGAVTPVANLEPVQLSGTVVRRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I L D+ +GD V V++ GE+IPK+ + + R ++ +F + CP C Sbjct: 358 IIASL-----------DLHLGDNVYVEKGGEIIPKITGVDLASRPAGSEKVTFITHCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR + AAH C C Q +++HF+SR A NIEGLG + +D F++ Sbjct: 407 GSKLVRYEDE------AAHYCPNETGCPPQIKGKIEHFISRRAMNIEGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I AD++TL++ ++E + GD S N+ I K + ER +F+L Sbjct: 461 G----LIHDVADLYTLRKE---DICRLERM---GDKSAENIIQGIRKSTEVPYERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +AK + S AQ DD LI V +G+ IAQ+I ++ Sbjct: 511 GIRFVGETVAKKVAKAFTSIDALAQA-------TLDD---LIHVDEIGEKIAQSIRLYFS 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + +N +E L++ + EK++S +++ + +V +G + R + +E + + G Sbjct: 561 DEKNRSLIER-LQQAGLQLAAGEKDLSDHTDKLQGQSIVISGVFARHSRDEYKELIEKHG 619 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +SRKT I+ G+N G SKLEKA++LG++I+NEE+FL ++ Sbjct: 620 GKNVGSISRKTSFILAGENMGPSKLEKAEKLGIRIVNEEEFLKMI 664 >gi|331013366|gb|EGH93422.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 787 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 219/623 (35%), Positives = 336/623 (53%), Gaps = 50/623 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137 + +V H +P LSL + D+ +F R+ + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEESDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ P+++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVCGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + +G K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L+ ++ G PV+ ++ AN + YY ++ R TL Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L + +GD V+++RAG+VIP+VV ++ R +A+ P C Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415 Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S V R + GK A +RC G LAC AQ + + H+VSR A +IEGLG Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + I PAD++ L+ Q I ++ GF ++S L +I R Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGI VG E A+ LA+ S Q + ++ + +P VG + Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLEV 575 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + + II+ DWL + + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQT--LPE 663 Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ + + A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779 Query: 719 QQYNTTL 725 + T+ Sbjct: 780 TELGVTV 786 >gi|313665597|ref|YP_004047468.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50] gi|312949194|gb|ADR23790.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50] Length = 668 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 240/711 (33%), Positives = 402/711 (56%), Gaps = 50/711 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S EQ ++ L+++++ YY P + D+EYD + ++ + +P+ S+ P Sbjct: 1 MSKEQVLLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITSDSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + K+GG +N K+TH P LSL ++N ++ +F T++ + ++ + E Sbjct: 61 S---QKVGGTVNEKFLKITHKTPMLSLGNVFNFDEFLEFNTQVSKVSNNLNNE---YVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE G V AA RG+G GEDV+ ++ I +IP L ++ E +EVRGE+ Sbjct: 115 LKIDGLSISLVYENGVLVSAATRGNGIVGEDVTINVKTIKSIP--LKISKKERVEVRGEI 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+SK +F +N + + +ANPRNAA+G LR+L+ + +R L+ F++ S+ Sbjct: 173 YLSKAEFEKINKKRLLNSEDLFANPRNAAAGTLRQLDSKIVASRNLDAFLYYY--ISDDS 230 Query: 251 AK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 AK QYE + ++ LGF N I +Y + ++++ L Y IDG+V+K+++ Sbjct: 231 AKLNQYESILRLNQLGFKTNKETMLCKNLDQIKAYIQKYTNLKNDLDYQIDGIVFKINDK 290 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ LG ++ P+W I++KF + T+LLD+ +GRTG +T A+LEPV + GA I+ Sbjct: 291 NLQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDVFATVGRTGKITYNAKLEPVFLMGAKIS 350 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATL+N +YIK +D+R+ V +K+AG+VIP+V++ I +E + F Sbjct: 351 AATLNNAEYIK-----------TKDLRINSIVKIKKAGDVIPEVIEAIKDEDFYKLEKFK 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 +CP C S L G++ C +CS + L L+HF SR+A NI LG + Sbjct: 400 PALYCPNCYSL----LEKNDGEV--DQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDR 452 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ F + I+ +DI+ L+ + +I I FG S NL DSIN +N S Sbjct: 453 SLEILFNLK----IIQNISDIYKLEEYKD----QILAIDNFGLKSYLNLIDSINASKNNS 504 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LE+ +F LGIRH+G++ A+ LAK Y Q I+N+++ + D+ LI++ +G+ +A Sbjct: 505 LEKVLFGLGIRHIGSKTAKILAKKY-------QNIDNLMSASYDE---LIQINSIGESLA 554 Query: 610 QAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +IV++++ N+ + L ++ + + N +S I NK V TGTL + R + + Sbjct: 555 LSIVDWFKIEDNLKLINDLKSFNINFNYLGAKINSNSIIANKSFVITGTLTR-PREEFKT 613 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +S +S++TD ++VG+N GSKLEKA++LGVKI++E+ F LL+ Sbjct: 614 LIENNAGKISGSISKQTDYLLVGNNVGSKLEKAKKLGVKIIDEQHFFDLLK 664 >gi|187251632|ref|YP_001876114.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191] gi|254781329|sp|B2KE31|DNLJ_ELUMP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|186971792|gb|ACC98777.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191] Length = 656 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 244/709 (34%), Positives = 377/709 (53%), Gaps = 56/709 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ +KE+ L +I+YH++ YY I D+EYD L R + PD A D Sbjct: 1 MDKIKKEIEDLRSKINYHNNLYYNLDNAEISDAEYDGLYARLKFLEAMNPDYA---DAAS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P KIGG + VTH+ +SL+ ++ E++ ++ R + + E K Sbjct: 58 PTQKIGGAASRVFTSVTHASQMMSLDNTYSSEEVLRWHERCVKSL---GHGNFEMVAEAK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++ YE G AA RGDG +GEDV+A I+ I TIP +S IE+RGE+YI Sbjct: 115 IDGVSCSLTYEGGVLTVAATRGDGKTGEDVTANIKTIKTIPHNISFK--NKIEIRGEIYI 172 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 K D LN+ G +AN RNAA+G +R+ N +R L FF H G ++ K Sbjct: 173 EKADLKRLNEIQENEGENIFANTRNAAAGSIRQKNAEISASRPLKFFAHSFG-YGDVDVK 231 Query: 253 GQYEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 G E + + GF V N +R A+ + I S+Y + +R+ LPYD+DG+V K++ F+ Sbjct: 232 GFAEFMDLCKSWGFSVTPNRIRTAD-INEITSFYKRFEELRAGLPYDVDGIVVKINSFAE 290 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 QK LG A+SPRW I+ K+ Q T + I +GRTGI+TPVA LEPV + G +I+NA Sbjct: 291 QKILGVTAKSPRWAIAFKYKPPQGKTVVNKIIFSVGRTGIITPVAELEPVAVAGVIISNA 350 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D IK L ++ GD V+V+RAGEVIPK+++++ + P Sbjct: 351 TLHNFDEIKRL-----------GVKEGDTVIVERAGEVIPKILNVV---KDGGGNEVKAP 396 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C S+V R + A RC AC AQ L HFVSR A +I+G G+ + Sbjct: 397 KNCPSCGSKVYRYEDE------VAIRCINP-ACPAQIKGHLLHFVSRAAMDIDGFGEAVV 449 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + + ++ ADI+ L+ Q + F D V NL ++ + SL Sbjct: 450 EQVVEKK----YVKDFADIYNLKAEQLLTLDL------FKDKKVNNLLLAVEASKKRSLS 499 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R +++ GIRHVG + LA ++ ++I N++A + +D+ ++ +G ++ Q+ Sbjct: 500 RVLYAFGIRHVGQKTGEILANHF-------EDIENMLAASLEDFQ---KINEIGPVVGQS 549 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYV 670 + +F Q+ + + A LK + + + ++ +E+ K LVFTG L + R +A+ Sbjct: 550 VYDFMQSAKGKEEI-ARLKTAGVNFTQPKVQLAGNELLGKTLVFTGELN-MPRTQAEALA 607 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS +S KT ++ G + GSKL KAQ LGV +++EE+FL L++ Sbjct: 608 KAHGGKVSGSVSSKTSYVVAGADAGSKLTKAQSLGVSVISEEEFLNLIK 656 >gi|17229209|ref|NP_485757.1| NAD-dependent DNA ligase LigA [Nostoc sp. PCC 7120] gi|81772126|sp|Q8YW98|DNLJ_ANASP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|17135537|dbj|BAB78083.1| DNA ligase [Nostoc sp. PCC 7120] Length = 677 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 240/717 (33%), Positives = 383/717 (53%), Gaps = 66/717 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +EL L Q+ SY YY PI+ D+ YD L R + P+L P+ P +I Sbjct: 12 EELRRLLQQASY---AYYVSDAPIMEDAVYDQLYRELQQLEIQHPELV---TPDSPTQRI 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIFFTLEPKIDGT 137 G V H+IP SLE +N+E+L+ + R W+++ + E KIDG+ Sbjct: 66 GERPATQFLSVRHNIPLYSLENAFNVEELQAWDQR----WRRQVAPTEAEYVAELKIDGS 121 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-----EIIEVRGEVY 192 I + Y+ G V A RGDG +GED++ +R I +IP L LN E +EVRGE + Sbjct: 122 AIALTYQNGILVRGATRGDGVTGEDITQNVRTIRSIP--LRLNFDGIEKVEKVEVRGEAF 179 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL---GKTSE 248 + F +N+E G + +ANPRNAA+G LR+L+ + R L+FF + L G Sbjct: 180 LPLEVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVARRRLDFFAYTLHISGMDDA 239 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A Q+E L+ ++ +GF VN + + + YY + R LPY DG+V K++ Sbjct: 240 SIANTQWEALELLQKMGFRVNPNHKLCQSLAEVADYYKYWDTERLNLPYMTDGVVLKLNS 299 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F LQ+QLG R PRW ++ K+ ++A TR+ +I + +GRTG LTP+A++ PV + G + Sbjct: 300 FKLQEQLGFTQRFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAQMRPVQLAGTTV 359 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN D I L DIR+GD V+V++AGE+IP+VV +I R D QPF Sbjct: 360 SRATLHNSDRIAQL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPADTQPF 408 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP+C VVR+ TG+ A RC +C A ++H+VSRDA +I+G+G+ Sbjct: 409 IMPTHCPVCGQPVVRE----TGE--AVTRCVNA-SCPAILKGSIEHWVSRDALDIKGVGE 461 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ D + AD++ L +T ++ + G+ S L ++I + +N Sbjct: 462 K---LVYQLVDKGL-VHSVADLYDL------TTERLFALERMGEKSAQKLIEAIAQSKNQ 511 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 R ++ LGIRHVG+ A+ L++ Y + + A +D + + +G I Sbjct: 512 PWSRVLYGLGIRHVGSVNAQLLSEKYRAVAELSS------AKQSD----IEGIYGIGAEI 561 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-----NVSSEIENKKLVFTGTLQKIQR 663 AQ++ ++++ N +E L+ + E+ N ++ K V TGTL ++R Sbjct: 562 AQSVYQWFRINANQSLIER-LQAAGLKLANTEEIPVMNNGILKLNGKTFVVTGTLPTLKR 620 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + + + G V+ +S+KTD ++VG++ GSKLEKAQ LG+ + E Q L +L++ Sbjct: 621 DEVKALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLEKAQALGIAQLTETQLLEILEE 677 >gi|261401085|ref|ZP_05987210.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970] gi|269208977|gb|EEZ75432.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970] Length = 827 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 264/840 (31%), Positives = 410/840 (48%), Gaps = 172/840 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +Y YY P + D+EYD L R +A+ P+L + P+ P ++G Sbjct: 18 ELTDLLNRYAYE---YYTLDAPSVPDAEYDRLFRELEALELNHPEL---KLPDSPTQRVG 71 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPK 133 GE +V H +P LSL ++ +D +Y F ++ + + +EPK Sbjct: 72 GEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRNGLNGEQPEYVIEPK 131 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV Sbjct: 132 FDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEVRGEVL 191 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K DF ALN +KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F Sbjct: 192 MLKADFAALNKRQADNNQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGF 250 Query: 251 AKGQY-EMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 A ++ + L + LGF + +G F I +++Y +M+ R LPY+IDG+V KV Sbjct: 251 AAEEHIQELAYFQKLGFSLPDG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKV 308 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + + Q++LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 309 NSLAQQRELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV 368 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH---- 422 +TNATLHN+D + +D+R+GD V+V+RAG+VIP+VV +I R Sbjct: 369 TVTNATLHNQDEVSR-----------KDVRIGDTVVVRRAGDVIPEVVRVIFERRPMRET 417 Query: 423 ----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 P +P+ P+ CPIC+S + R+ G+ VA Sbjct: 418 AVAVSDSIGHRQDDLFAETPSANQTRSVPLHKPYRLPTHCPICRSEIERE----EGEAVA 473 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF--- 511 RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 474 --RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLD 527 Query: 512 --TLQRRQQTS--TTKIENILGFGDVSV--------------TNLYDSINKRRNISLERF 553 TLQ+ ++ + T + + SV N+ I + L RF Sbjct: 528 IPTLQKMKEAADKTVAESDQMPSEGSSVGASGKHKKPPVKWAENILAGIESGKTPELARF 587 Query: 554 IFSLGIRHVGAE--------------------------------IARSLAKYYLSYQNFA 581 +F+LGIRHVG +ARS+A ++ + A Sbjct: 588 LFALGIRHVGERTAKTLAQAFGSLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 647 Query: 582 QEINNIIAHNNDDWLSLIRVPL-----------------VGDIIAQAIVEF--------- 615 I+ ++A + +P + + AQA+ E Sbjct: 648 M-IDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGFKISENKAQALWELAGQSIEGLQ 706 Query: 616 --------YQNPRNICAVEALLKEVS------PS---IGRHEKNVSSEIENKKLVFTGTL 658 +Q R+ ALL+ + PS + ++ + K V TGTL Sbjct: 707 TDKALPTDWQAWRSEAQNAALLENLKTFFAQMPSEDEAAQRSDGINKAVAGKTFVLTGTL 766 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 767 PTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLL 826 >gi|332638905|ref|ZP_08417768.1| NAD-dependent DNA ligase [Weissella cibaria KACC 11862] Length = 678 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 236/712 (33%), Positives = 388/712 (54%), Gaps = 54/712 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I +++ +A+ E+ +L+Q++ YY+ P + D+ YD R +A+ A+P+L Sbjct: 7 IATMTVIEAKAEIDALQQDLKQWAQEYYENDAPSVEDAVYDREYNRLEALEAAYPELVT- 65 Query: 69 EDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ ++GG+ S L KV H IP LSL ++++++L ++ QK + + Sbjct: 66 --PDSITQQVGGKATKSDLPKVVHDIPMLSLGDVFSLDELYDWLATT----QKSFNTPLS 119 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + E KIDG I++ YE G+ + A+ RGDG+ GEDV+A +R I IP+ LN P +EV Sbjct: 120 YNAELKIDGLAISLVYENGELIQASTRGDGNIGEDVTANVRQIKRIPK--QLNEPISVEV 177 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG-LG 244 RGEVY+ K F+ LN++ G +ANPRNAA+G LR+L+ +T R L+ F++ + Sbjct: 178 RGEVYMPKAAFVTLNEQRERDGLSTFANPRNAAAGSLRQLD-VKVTKQRQLDAFLYAAVD 236 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + + Q ++LQ++ LG P N + I +Y N+ + R L Y IDG+V Sbjct: 237 AENTLGVTTQADLLQRLAELGLPANPTNAVVASEADIAAYINDETATRDELAYGIDGIVI 296 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + ++LG + PRW I++KF ++A T + DI+ +GRTG +TP A ++PV + Sbjct: 297 KVNSLAYHEELGNTVKVPRWAIAYKFPPEEAHTVVRDIEWTVGRTGAVTPTAVMDPVQLA 356 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + A+LHN DY+ +DIR+GD V + +AG++IP++ +I+++R D Sbjct: 357 GTTVARASLHNPDYLN-----------SKDIRIGDTVTLHKAGDIIPEIGQVILSQRPTD 405 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 ++ + P CP C +V G++ A RC C AQ E L HF SRDA NI+ Sbjct: 406 SEVYQMPLGCPACGQELVH----IDGEV--ALRCINPF-CPAQVQESLTHFASRDAMNID 458 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG + + I +D++ L Q + K FG+ S NL +I Sbjct: 459 GLGPKIVGQLLSRN----MISQVSDLYRLTFEQLLTLDK------FGETSANNLLRAIEN 508 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + S+ER +F LGIR+VGA+ A+++A +++ + IAH + D + +P + Sbjct: 509 SKQNSVERLLFGLGIRNVGAKAAKTIAAKFVTL--------DAIAHASAD--DIAELPGM 558 Query: 605 GDIIAQAIVEFY--QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 G II +I +++ ++ + + A L + E + +KK+V TG L Sbjct: 559 GLIIGHSIAQYFDTEHAQELVADFEQLGVNTRYTQAVEIATDTVFSDKKVVLTGKLALFS 618 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R +A ++ GA VS +S+KTD++I G + GSKL KAQ+LG++I +E Q Sbjct: 619 RSEATAWLESQGATVSGSVSKKTDLLIAGADAGSKLTKAQELGIEIWSEAQL 670 >gi|218131107|ref|ZP_03459911.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697] gi|217986811|gb|EEC53144.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697] Length = 666 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 237/709 (33%), Positives = 375/709 (52%), Gaps = 55/709 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L ++ H+ YY + P I D E+D + R + P+ +D N P + Sbjct: 4 KERIDQLRTDLHRHNYNYYVLNTPEISDKEFDDMMRELQDLEKEHPEY---QDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136 +G ++N + +VTH P LSL ++ ++ F R+ KK N F E K DG Sbjct: 61 VGSDLNKNFTQVTHKYPMLSLGNTYSENEVTDFYDRV-----KKALNEDFEICCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195 T I++ YE GK V A RGDG G+DV+ ++ I TIP VL N PE E+RGE+ + Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNNYPEHFEIRGEILMPW 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A +ANPRNAASG L+ N + +R L+ +++ L E+ G Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ GF ++ ++ ++ + Y + R LP DG+V KV+ QK Sbjct: 235 YENLQTAAGWGFKISEHTKKTHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKS 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LH Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAITPVANLDPVQLSGTIVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + + R + F + Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITH 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S++VR G+ AAH C AC Q +++HF+SR A NI+GLG + +D Sbjct: 404 CPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDT 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I+ AD++ Q + I+N+ G+ S N+ I + + ER Sbjct: 458 FYR----LGLIKDTADLY------QLTAEDIKNLDRMGEKSAENIIKGIKASKEVPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VG +A+ +AK + NNI N D L + +G+ IAQ+I+ Sbjct: 508 LFALGIRFVGETVAKKIAKSF----------NNIEELENADLEKLTSIDEIGEKIAQSIL 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ +P N+ +E LK + R E+++ + ++ + +V +G R + ++ + Sbjct: 558 IYFSSPLNVSLIER-LKSAGLQLYRKEEDLNEYTDKLAGQSIVISGVFTHHSRDEYKDLI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ G+N G SKLEKA +LG+KI++E++FL L+ Sbjct: 617 EKNGGKNVGSISTKTSFILAGENMGPSKLEKAHKLGIKIISEDEFLTLI 665 >gi|332704021|ref|ZP_08424109.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay] gi|332554170|gb|EGJ51214.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay] Length = 771 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 220/614 (35%), Positives = 351/614 (57%), Gaps = 52/614 (8%) Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177 WQ F ++PK+DG + YE G+ V AA RGDG GEDV+ +R + +P VL Sbjct: 189 WQSLPALLGTFWIDPKLDGLALEAIYENGRLVRAATRGDGEIGEDVTQNVRTVKNLPLVL 248 Query: 178 SLN--IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITR 234 +P ++EVRGEV + K DF ALN+ G K +ANPRNAA+G +R+L+P TR Sbjct: 249 HDGGVMPRLLEVRGEVVMRKADFHALNERQAERGEKIFANPRNAAAGSVRQLDPRITATR 308 Query: 235 YLNFFVHGLGKTSEIFA---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 L FF +G+G+ A +GQ E++ + LGF + RQ + + + +++ Sbjct: 309 PLRFFAYGIGRVDWNGAPGWQGQDEIIAGLAQLGFAIPPEARQCRHPDEVAASFERLQAG 368 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R LP++IDGLV K++ LQ+ LG A++PRW ++ KF QA T L DI IQ+GRTG+ Sbjct: 369 REALPFEIDGLVAKLNCLELQRFLGFTAKAPRWALALKFPAYQAETLLRDIRIQVGRTGV 428 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 LTPVA L+PV++GG +++A+LHNE YI+ +D+R+GDRVL++RAG+VIP Sbjct: 429 LTPVAELDPVSVGGVTVSSASLHNESYIR-----------EKDLRLGDRVLIQRAGDVIP 477 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV + +R Q ++FP CP+C + V+ L + ++ +C ++C A + Sbjct: 478 EVVRPLAEKRTGGEQEYTFPPECPVCHTEVI--LASEERRI---WKCV-NISCPAVIRQS 531 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 + HFVS+ +IEGLG++ ++ +R PAD+FTL++ T + + G Sbjct: 532 IIHFVSKAGLDIEGLGRKWVEILIDKG----MVRSPADLFTLKK------TDLLTLERMG 581 Query: 532 DVSVTNLYDSINK-RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 D S +N +SI + + L R I +LGI HVG E AR LA + ++++ + A Sbjct: 582 DKSASNFVESIRQAKEEAKLPRLIAALGIPHVGEETARLLASRF-------RDLDALGAA 634 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV------SPSIGRHEKNVS 644 + L +P + D I+++IV+F+ N N + KE+ +P++ E Sbjct: 635 TRQE---LEELPGISDKISESIVDFFLNEANRSLL-GRFKEIGLWPSNAPAVA-PEGKTK 689 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + K+++FTG L + R +A+ + Q G + +S+ D ++VG+NPGSKL+KA +L Sbjct: 690 LPLAGKRVLFTGGLPSMSRSEAETLLEQAGGTAAKSISKNVDYVVVGENPGSKLDKADKL 749 Query: 705 GVKIMNEEQFLFLL 718 G+ ++ E+FL L+ Sbjct: 750 GLAVIGFEEFLRLV 763 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 3/105 (2%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E R+ + L +E+ +H+ YY P+I D+EYD + R + P+L D + P Sbjct: 6 EDIRQRVERLRKELHFHNYRYYVLDAPVISDAEYDRMMRELQDLEEHNPEL---RDTSSP 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 ++G + H++ SL+ ++++ R+F+ R+ R ++ Sbjct: 63 TQRVGAAPAEGFAQYRHALRMYSLDNAMSVDEWREFVARVGRHFE 107 >gi|291557760|emb|CBL34877.1| DNA ligase, NAD-dependent [Eubacterium siraeum V10Sc8a] Length = 660 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 235/705 (33%), Positives = 367/705 (52%), Gaps = 51/705 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQ + E L +E+ H+ YY P I D EYD L RR I P++ + P Sbjct: 4 EQIKSEYEQLCREVEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIVSE---SSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG + KVTH + SL+ +++ +L +F R+ KK + +EPKI Sbjct: 61 TQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERV-----KKAVGKAVYCVEPKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++ Y+ G F + RGDG GED++ ++ I +IP L+ IP IEVRGEVY+ Sbjct: 116 DGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMELNEKIP-FIEVRGEVYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K DF L + + +P NPRNAA+G LR+ + +R L+ FV L + Sbjct: 175 KADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIEGRELTC 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L M+ LGF V +G + + VS E+ R + YDIDG V KVD F L+ Sbjct: 235 HSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDNFELRN 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+ P+W ++ K+ ++ T+LLDI+I +GRTG LTPVA EPV + G ++ A L Sbjct: 295 ELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSRAVL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+DYI +DIR+GD + V++AG++IP+VV + + +++PF P Sbjct: 355 HNQDYID-----------SKDIRIGDIIAVRKAGDIIPEVVRSVSHAE--NSEPFIIPHI 401 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C + R + A RC + C AQ L+ ++HF SR A NI+GLG+ + Sbjct: 402 CPVCHGKAERAEDE------AVIRCV-NIDCPAQLLKNIEHFASRPAMNIDGLGEAVVKQ 454 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ I AD+++LQ++ +E + GF VS + L +I + S +R Sbjct: 455 LVENR----LISTVADLYSLQQQD------LEMLPGFAKVSASKLIANIENSKANSPDRL 504 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGI+ +G + A+ L K++ S + ++ + I+ V GDI+A I Sbjct: 505 LFALGIKGIGQKNAQLLMKHFGSIEKLSETLPEEIS----------AVENFGDILANNIF 554 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 P +E LK + S ++ V TGTL + R +A+ + Q Sbjct: 555 TALHEPHMTELIER-LKSYGVNTVYQSDVKSDKLAGLTFVITGTLPDMTRDEAKTLIEQN 613 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G S +SRKT ++ G+ GSKL KAQQLGV +++++Q + ++ Sbjct: 614 GGKCSGSVSRKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMI 658 >gi|302865766|ref|YP_003834403.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029] gi|302568625|gb|ADL44827.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029] Length = 717 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 228/712 (32%), Positives = 373/712 (52%), Gaps = 51/712 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR+ ++L QE++ H YY P + D+E+D R +A+ +P L P+ P Sbjct: 32 ARERHATLSQELTEHQYRYYVLDAPTVTDAEFDKQLRELEALEAEYPAL---RTPDSPTQ 88 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + VTH+ LSL+ + E+L + R+ ++ + + E K+DG Sbjct: 89 RVGGTFSTDFTPVTHAERMLSLDNAFADEELAAWSERV----ERDAGGPVPYLCELKVDG 144 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIPEIIEVRGEV 191 I + YEKG+ V AA RGDG +GEDV+A +R+I +P L+ ++P++IEVRGE+ Sbjct: 145 LAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIKGVPARLTPAGDFPDVPDLIEVRGEI 204 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y F LN ++ G+ P+ANPRNAA+G LR+ +P +R L VHG+G + Sbjct: 205 YFPVAAFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRVTASRPLRLVVHGVGARTGFR 264 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E ++ G P ++ R + G+ Y R + ++IDG+V KVD S Sbjct: 265 PAAQSESYAALKAWGLPTSDRWRVVDDLAGVAEYIAYYGRHRHDVEHEIDGVVVKVDPVS 324 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I+ K+ ++ +T+LLDI++++GRTG +TP A L+PV + G+ + Sbjct: 325 IQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRAVLQPVRVAGSTVAY 384 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN + +V R G + +GD V++++AG+VIP+V+ +V R DA+PF Sbjct: 385 ATLHN---------AREVERKG--VLIGDTVVLRKAGDVIPEVLGPVVELRPADARPFVM 433 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + L P V RC G AC Q ER+ + SR +IE LG++ Sbjct: 434 PTTCPACGT----PLAPAKESDVDI-RCPNGRACPGQIRERVFYLASRKVLDIEVLGEKG 488 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ I D+F L Q + + N G + T L D++ + + L Sbjct: 489 AAALLDAQ----IITNEGDLFQLDAEQLSRSPFFVNKDGSLGSNATKLLDNLAEAKERDL 544 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IRHVG A++LA+++ S ++ V VG IA Sbjct: 545 WRVLVALSIRHVGPTAAQALARHFRSVAAIEAAGEEELSS----------VDGVGPTIAA 594 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKA 666 ++ E++ + ++++ + + R + + E ++ +V TGTL R +A Sbjct: 595 SVKEWFA----VDWHRDVVRKWAEAGVRMAEEAADEGPRPLDGITVVVTGTLSGFSRDQA 650 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + G V+ +S+KT ++VGDNPGSK +KA L + I++E+ F LL Sbjct: 651 AEAIQVRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKLPILDEDGFRVLL 702 >gi|119476275|ref|ZP_01616626.1| DNA ligase [marine gamma proteobacterium HTCC2143] gi|119450139|gb|EAW31374.1| DNA ligase [marine gamma proteobacterium HTCC2143] Length = 781 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 217/626 (34%), Positives = 339/626 (54%), Gaps = 47/626 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I ++++ L ++ H+ Y+ +P + D+EYD L R+ + FP ++ P Sbjct: 4 ISDPKQQIEELRSTVNLHNYRYHALDEPTVPDAEYDRLIRQLQVLEAKFPQFITNDSPT- 62 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + +V H P LSL+ ++N ++L F R+ K S + EPK Sbjct: 63 --QRVGAKPLAGFNQVQHEAPMLSLDNVFNAQELSDFDHRVKERLGKGVKFS--YCCEPK 118 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ Y GK V A RGDG++GED++ +R IPTIP L P ++EVRGE+Y Sbjct: 119 LDGAAVSLLYRDGKLVRGATRGDGNTGEDITHNVRTIPTIPLALIGEGYPRLLEVRGEIY 178 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG-KTSEI 249 + + F LN A K + NPRNAA+G LR L+ IT R L + +G Sbjct: 179 MPRAGFDMLNKRARANDEKLFVNPRNAAAGSLRMLD-AKITAERPLEMCCYSVGVMEGGD 237 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A +L +++ GF +NN +R + G + Y++ + R LPYDIDG+VYKVD Sbjct: 238 LAPNHSGILAQLQGWGFRINNEMRVVDDVEGCLKYHDYLLRRRPDLPYDIDGIVYKVDTI 297 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 S Q+ LG A+ PRW I+HKF ++ T LLD+D Q+GRTG +TPVARL PV +GG ++ Sbjct: 298 SQQQSLGFTAKGPRWAIAHKFPAEEEITTLLDVDFQVGRTGAVTPVARLAPVFVGGVTVS 357 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I+ L I + D V+V+RAG+VIP++ +++ R DA + Sbjct: 358 NATLHNRDEIERL-----------GIMINDAVVVRRAGDVIPQIAKVVLERRGSDAIKIA 406 Query: 430 FPSFCPICQSRVVR---DLNPKTGK---LVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 FP +CP+C S V R + K+G+ + A+RC G L C AQ + + HF SR A +I Sbjct: 407 FPDYCPVCGSHVERVKIVTHSKSGRREGVGVAYRCVGRLVCRAQLSQAIIHFASRKALDI 466 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG++ ++ E ++ PAD++ LQ + + + GF ++S NL +I Sbjct: 467 DGLGEKIVEQLVIEE----RLKSPADLYRLQ------VSDLAALEGFAELSAKNLVSAIA 516 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 RR + L + +F+LGI VG E A+ LA+ + S + + LI++P Sbjct: 517 ARRAVPLHKLVFALGIPDVGEETAKVLARVFGSLERIRVAKPEL----------LIQLPD 566 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALL 629 +G +A I EF+ + N ++ L+ Sbjct: 567 IGREVAGEITEFFADNHNALVLDDLV 592 Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 16/184 (8%) Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R +S + I S I ++G A +A ++ + + ++A + DD + ++ + Sbjct: 609 RGGLSFPQLIASFNISNIGPTSAARVAAHFGT-------MAALMAASIDDLAMVEKLSVK 661 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQ 659 A + +++Q +N E L +++ H + EN L V TGTL+ Sbjct: 662 A---ASGLFDYFQCTQNRQYAEQLEQQLL-DFKMHWNCEKGQTENLPLSGMTYVVTGTLE 717 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R A++ + LGA V+ +S+ T ++ G GSKL KA+QLGV +M+E FL LL Sbjct: 718 SMGRDLAKQKLESLGAKVAGSVSKNTHCVVAGSAAGSKLVKAEQLGVTVMDEAMFLALLA 777 Query: 720 QYNT 723 +++ Sbjct: 778 EFDV 781 >gi|241759788|ref|ZP_04757888.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114] gi|241319796|gb|EER56192.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114] Length = 859 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 268/841 (31%), Positives = 410/841 (48%), Gaps = 177/841 (21%) Query: 18 RKELSSLEQEISYHDDC-------YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 R ++ Q I Y D YY P + D+EYD L R +A+ P+L Sbjct: 35 RLHMNPTAQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKL--- 91 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDN 124 P+ P ++GGE +V H +P LSL ++ +D +Y F ++ + Sbjct: 92 PDSPTQRVGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVHGGLNGE 151 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPE 183 + +EPK DG I++ Y G AA RGDG +GEDV+ ++ + IP R+ NIPE Sbjct: 152 KPEYVIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTQNVKTVSNIPLRLHGENIPE 211 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVH 241 +IE+RGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + Sbjct: 212 LIEIRGEVLMLKADFAALNARQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPY 270 Query: 242 GLGKTSEIF-AKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + + F A+ + L + LGF + ++ ++++Y +M+ R TLPY+I Sbjct: 271 SIARQQGGFIAEEHLQELSYCKELGFSLPDSNFGCFPNIDEVLAFYEQMQQKRPTLPYEI 330 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+ Sbjct: 331 DGMVVKVNSLAQQEKLGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQ 390 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +I Sbjct: 391 PVFVGGVTVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFE 439 Query: 420 ER---------------------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 R P +P+ P+ CPIC S + R+ G+ Sbjct: 440 RRPMQETKISVSDGLQDDLFAETPSETRSEPIHKPYRLPTHCPICHSEIERE----EGEA 495 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF- 511 VA RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 496 VA--RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYR 549 Query: 512 ----TLQRRQQT-----------STTKIENILG-FGDVSVT------------NLYDSIN 543 TLQ+ ++T S ++IE+ G G+ + N+ I Sbjct: 550 LDIPTLQKMKETADKASANEEEPSNSEIEDFEGETGNTLLAKNVKKQPTKWAENILAGIE 609 Query: 544 KRRNISLERFIFSLGIRHVGAE--------------------------------IARSLA 571 + L RF+F+LGIR+VG +ARS+A Sbjct: 610 ASKTPELARFLFALGIRYVGERTAKTLAQAFGTLENVRHAPEPILACLPDIGTVVARSIA 669 Query: 572 KYY----------------LSYQNFAQEINNIIAHNNDDWLSLIRVP------------- 602 ++ ++ Q+ A I + W++ R+P Sbjct: 670 HFFAQKAQQAMIDELLAVGVAPQSQAVTIPPLRHAEPQRWIA--RLPDFKISETKALALW 727 Query: 603 -LVGDIIA-----QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---------I 647 L G I +A+ +Q RN LL+ + + N+ E + Sbjct: 728 ELAGQSIEGLQTDKALPADWQTWRNKPQNATLLENMKTFFAQTRSNLQDETISDGINEAV 787 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 K V TGTL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKAQ LGV Sbjct: 788 AGKTFVLTGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGVA 847 Query: 708 I 708 + Sbjct: 848 V 848 >gi|289626390|ref|ZP_06459344.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866315|gb|EGH01024.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 787 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 220/623 (35%), Positives = 335/623 (53%), Gaps = 50/623 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ YY +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDEHNYRYYVLDEPSIPDVEYDRLFHELKALEVENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137 + +V H +P LSL + D+ +F R+ + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ P+++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + +G K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L+ ++ G PV+ + AN + YY ++ R TL Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLETLKKWGMPVSRELNLANGVEECLDYYRDIGERRLTLNYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L + +GD V+++RAG+VIP+VV ++ R +A+ P C Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415 Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S V R + GK A +RC G LAC AQ + + H+VSR A +IEGLG Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + I PAD++ L+ Q I ++ GF ++S L +I R Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGI VG E A+ LA+ S Q + ++ + +P VG + Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLEV 575 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + + II+ DWL + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRHT--LPE 663 Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ + + A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L Sbjct: 720 ERMSRDVAKEKLETLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779 Query: 719 QQYNTTL 725 + + Sbjct: 780 TELGVAV 786 >gi|313679715|ref|YP_004057454.1| DNA ligase, nad-dependent [Oceanithermus profundus DSM 14977] gi|313152430|gb|ADR36281.1| DNA ligase, NAD-dependent [Oceanithermus profundus DSM 14977] Length = 670 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/713 (32%), Positives = 375/713 (52%), Gaps = 52/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+A + ++ L I H+ YY +P I D+EYDAL R + AFP+L P Sbjct: 1 MTREEAARRVAELTWAIRRHNHLYYVLDRPEISDAEYDALVRELAELEAAFPEL---RSP 57 Query: 72 NGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P N++G G + S VTH P SL+ + +++ F R+ R + + + L Sbjct: 58 ASPTNQVGAGVLGASFEPVTHPTPLYSLDNAFGPDEIAAFEERVARAL--GTEPPLEYAL 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG I + YE G+ V+ A RG+G GE+V+ + + +P L P +EVRGE Sbjct: 116 EYKIDGLSINLLYEGGRLVWGATRGNGRVGEEVTQNLLTVRDVPSRLE-GAPPRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSE 248 VY+ + FL LN G P+ NPRNAA+G +R+ +P R L + +G+G+ +E Sbjct: 175 VYMPREVFLELNRAREEAGELPFKNPRNAAAGAVRQKDPRIAAERRLAAYFYGVGEGAAE 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + A+ Q E+L ++ LG PV R A G+ Y +M + R LP++ DG KV++ Sbjct: 235 LRARTQLELLDRLEALGLPVEPHRRSAVGAAGVEEAYRQMLARRDALPFEADGATVKVND 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q++LG A+SPRW +++KF ++ TR+ ++ Q+GRTG +TPVA L PV + G + Sbjct: 295 LEAQRRLGHTAKSPRWAVAYKFPAEEKETRIEEVVFQVGRTGRITPVAHLTPVQLDGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + TLHN+ +I+ LDA RVGD V + ++G +IP+++ +I +R +P Sbjct: 355 SRVTLHNKAFIEELDA-----------RVGDAVRLHKSGGIIPEILRVIKEKRTGKEEPI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C + +V D GK+ HRC L C A+ ++L+H+ SR A +++GLG+ Sbjct: 404 VFPYHCPECGANLVED-----GKI---HRCPNPL-CPAKAFQQLRHWASRRAMDVQGLGE 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + ++ AD++ L + ++ G+ S NL + + + Sbjct: 455 KLIEQLLEK----GLVKDAADLYRLGKEDLAGLERM------GEKSAENLLVQLEESKGR 504 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 LER ++ LGI VG +AR+LA+ + + I ++ ++ L VP VG + Sbjct: 505 GLERALYGLGIPQVGEALARTLARRFGT-------IEKLMEAGEEE---LEAVPDVGPVT 554 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSI-GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A I + R + LKE S + + + +V TG L + R + + Sbjct: 555 AAEIRRALADERMRSLIRR-LKEAGVSFEAKQAQPAEQPLAGLTIVLTGELSR-PRSEVK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 E + LGA V+ +SRKT ++ G GSKL+KA++LGV +++E LL + Sbjct: 613 EELEALGAKVAGSVSRKTSYVVAGPGAGSKLKKARELGVPVLDEAGLAALLAE 665 >gi|330897709|gb|EGH29128.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 657 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 217/623 (34%), Positives = 338/623 (54%), Gaps = 50/623 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAQLDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIFFTLEPKIDGT 137 + +V H +P LSL + D+ +F R+ + + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGEGSKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ P+++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + +G K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L+ ++ G PV+ ++ AN ++YY ++ R L Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L + +GD V+++RAG+VIP+VV ++ R +A+ P C Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415 Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S V R + GK A +RC G LAC AQ + + H+VSR A +IEGLG Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + I PAD++ L+ Q I ++ GF ++S L +I R Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGI VG E A+ LA+ S + Q + ++ + +P VG + Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 575 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 576 AYEIHSFFEDEHNRSVIDALLGE 598 >gi|320323491|gb|EFW79576.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea str. B076] Length = 787 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 219/623 (35%), Positives = 336/623 (53%), Gaps = 50/623 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137 + +V H +P LSL + D+ +F R+ + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ P+++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + +G K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L+ ++ G PV++ ++ AN + YY ++ R TL Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L + +GD V+++RAG+VIP+VV ++ R +A+ P C Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415 Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S V R + GK A +RC G LAC AQ + + H+VSR A +IEGLG Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + I PAD++ L+ Q I ++ GF ++S L +I R Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI +LGI VG E A+ LA+ S Q + ++ + +P VG + Sbjct: 526 TLARFIHALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLEV 575 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + + II+ DWL + + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQT--LPE 663 Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ + + A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779 Query: 719 QQYNTTL 725 + + Sbjct: 780 TELGVAV 786 >gi|189461356|ref|ZP_03010141.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136] gi|189431885|gb|EDV00870.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136] Length = 667 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 236/706 (33%), Positives = 374/706 (52%), Gaps = 52/706 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +E+ H+ YY + P+I D E+D L R + P+ DPN P ++G Sbjct: 7 IDQLREELHVHNYNYYVLNAPVISDLEFDKLMRELQDLEALHPEYY---DPNSPSVRVGS 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 ++N + +V H P LSL ++ ++ +F R+ K + E K DGT I+ Sbjct: 64 DLNKNFTQVEHKYPMLSLGNTYSQAEVTEFYERV----SKSLNEEFELCCEMKYDGTSIS 119 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFL 199 + YE GK V A RGDG G+DV+ ++ I +IP VL P+ E+RGE+ + N F Sbjct: 120 LTYEDGKLVRAVTRGDGVRGDDVTDNVKTIRSIPLVLHGEGYPKNFEIRGEILMPWNVFE 179 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258 LN E +ANPRNAASG L+ N + R L+ +++ L + G YE L Sbjct: 180 ELNRERELREEPLFANPRNAASGTLKSQNSAVVANRKLDAYLYYL-LGDNLPHDGHYENL 238 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 Q+ GF +++ R+A T + + N R LP DG+V KV+ Q+ LG Sbjct: 239 QEAAKWGFKISHISRKARTLQEVFDFINYWDVERKNLPVATDGIVLKVNSLRQQRNLGYT 298 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A+SPRW I++KF ++A T+L + Q+GRTG +TPVA L+PV + G ++ A+LHN D Sbjct: 299 AKSPRWAIAYKFQAERALTKLEKVTYQVGRTGAVTPVANLDPVQLSGTVVRRASLHNADI 358 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I L D+ +GD V V++ GE+IPK+ + V+ R ++ +F + CP C Sbjct: 359 IASL-----------DLHIGDMVYVEKGGEIIPKITGVEVSARPAGSEKVTFITHCPECG 407 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S +VR + AA+ CT AC Q +++HF+SR A NIEGLG + +D F++ Sbjct: 408 SELVRYEDE------AAYYCTNETACPPQIKGKIEHFISRRAMNIEGLGPETVDLFYQEG 461 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I AD++TLQ T I + G+ S N+ I + + + ER +F+LG Sbjct: 462 ----LIHDIADLYTLQ------TADICRLERMGEKSAENIIQGIERSKEVPYERVLFALG 511 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IR VG +A+ +AK + S + A + N DD LI V +G+ IA +I++++ N Sbjct: 512 IRFVGETVAKKVAKAFRSIEALA-------SANLDD---LIHVDEIGEKIAGSIIQYFAN 561 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 +N VE L++ + E+++S +++ +V +G + R + + + + G Sbjct: 562 EKNRILVER-LRQSGLKLEADEEDLSGYSDKLKGMSIVISGVFARHSRDEYKALIEKHGG 620 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 +S+KT I+ GDN G SKLEKAQQL + I +E +FL ++++ Sbjct: 621 KNVGSISKKTSFILAGDNMGPSKLEKAQQLNIPIKDENEFLAMIEE 666 >gi|315502322|ref|YP_004081209.1| DNA ligase, nad-dependent [Micromonospora sp. L5] gi|315408941|gb|ADU07058.1| DNA ligase, NAD-dependent [Micromonospora sp. L5] Length = 717 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 228/712 (32%), Positives = 373/712 (52%), Gaps = 51/712 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR+ ++L QE++ H YY P + D+E+D R +A+ +P L P+ P Sbjct: 32 ARERHATLSQELTEHQYRYYVLDAPTVTDAEFDKQLRELEALEAEYPAL---RTPDSPTQ 88 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + VTH+ LSL+ + E+L + R+ ++ + + E K+DG Sbjct: 89 RVGGTFSTDFTPVTHAERMLSLDNAFADEELAAWSERV----ERDAGGPVPYLCELKVDG 144 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-----NIPEIIEVRGEV 191 I + YEKG+ V AA RGDG +GEDV+A +R+I +P L+ ++P++IEVRGE+ Sbjct: 145 LAINLTYEKGRLVRAATRGDGRTGEDVTANVRSIKGVPARLTPAGDFPDVPDLIEVRGEI 204 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y F LN ++ G+ P+ANPRNAA+G LR+ +P +R L VHG+G + Sbjct: 205 YFPVAAFADLNASLVEQGKAPFANPRNAAAGSLRQKDPRVTASRPLRLVVHGVGARTGFR 264 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E ++ G P ++ R + G+ Y R + ++IDG+V KVD S Sbjct: 265 PAAQSESYAALKAWGLPTSDRWRVVDDLAGVAEYIAYYGRHRHDVEHEIDGVVVKVDPVS 324 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q +LG +R+PRW I+ K+ ++ +T+LLDI++++GRTG +TP A L+PV + G+ + Sbjct: 325 IQGRLGSTSRAPRWAIAFKYPPEEVNTKLLDIEVEVGRTGRVTPRAVLQPVRVAGSTVAY 384 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN + +V R G + +GD V++++AG+VIP+V+ +V R DA+PF Sbjct: 385 ATLHN---------AREVERKG--VLIGDTVVLRKAGDVIPEVLGPVVELRPADARPFVM 433 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + L P V RC G AC Q ER+ + SR +IE LG++ Sbjct: 434 PTTCPACGT----PLAPAKESDVDI-RCPNGRACPGQIRERVFYLASRKVLDIEVLGEKG 488 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ I D+F L Q + + N G + T L D++ + + L Sbjct: 489 AAALLDAQ----IITNEGDLFQLDAEQLSRSPFFVNKDGSLGSNATKLLDNLAEAKERDL 544 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IRHVG A++LA+++ S ++ V VG IA Sbjct: 545 WRVLVALSIRHVGPTAAQALARHFRSVAAIEAAGEEELSS----------VDGVGPTIAA 594 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKA 666 ++ E++ + ++++ + + R + + E ++ +V TGTL R +A Sbjct: 595 SVKEWFA----VDWHRDVVRKWAEAGVRMAEEAADEGPRPLDGITVVVTGTLGGFSRDQA 650 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + G V+ +S+KT ++VGDNPGSK +KA L + I++E+ F LL Sbjct: 651 AEAIQVRGGKVTGSVSKKTGFVVVGDNPGSKADKAATLKLPILDEDGFRVLL 702 >gi|15835041|ref|NP_296800.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg] gi|270285206|ref|ZP_06194600.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg] gi|270289225|ref|ZP_06195527.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Weiss] gi|301336602|ref|ZP_07224804.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum MopnTet14] gi|13626415|sp|Q9PKP2|DNLJ_CHLMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|7190466|gb|AAF39279.1| DNA ligase [Chlamydia muridarum Nigg] Length = 660 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 234/702 (33%), Positives = 381/702 (54%), Gaps = 57/702 (8%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 +L E+ HD YY +P I D YD R I P+ + P P +G Sbjct: 11 ALCTELIEHDRRYYVLDRPTISDYSYDMKMRELQKIEAQHPEW---KVPWSPTIYLGDRP 67 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + V HS P +S+ ++++E+L +F +R + ++LE KIDG + IR Sbjct: 68 SGQFPVVPHSHPMVSIANVYSLEELEEFFSRTEKLLGYFPT----YSLELKIDGIAVAIR 123 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 YE F A RG+G GED++A + I ++P L + PE +EVRGEV++S F LN Sbjct: 124 YENRTFAQALSRGNGVKGEDITANVSTIRSLPMTLPQDAPEEVEVRGEVFLSYQAFEKLN 183 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 G+ +ANPRNAA G L+ L+ + R L+ ++GL E +E L Sbjct: 184 ICQREQGKLEFANPRNAAGGTLKLLSSREAAKRNLDLSIYGLITNRE--EHSHFENLGLC 241 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GFP+ +Q T ++ E++ +RS LP IDG+V KVD + Q +LG ++ Sbjct: 242 AHWGFPIAGMPKQCRTKEEVIERIREVEGMRSRLPMAIDGVVVKVDSVAEQHRLGLTSKH 301 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+NED I+ Sbjct: 302 YRWAIAYKYAPERAETILQDITVQVGKTGILTPVAELTPVLLSGSRVSRASLYNEDEIE- 360 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GD V V++ GE+IPK+V I + +R PD++P+ PS CP+C + V Sbjct: 361 ----------KKDIRIGDSVYVEKGGEIIPKIVGINLAKRSPDSKPWKMPSLCPMCHNPV 410 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 +++ + RCT L C LE++ F S+ A NI+ LG++ + F+ Sbjct: 411 IKER--------VSVRCTNPL-CLGGMLEKICFFASKGALNIDHLGEKVIAKLFE----M 457 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 IR +D+F L + ++ + GF D SV NL SI + ++L+RF+ +L I Sbjct: 458 GLIRSCSDVFAL------TENDLKQVPGFKDRSVHNLLASIAGAKEVTLDRFLTALSIPF 511 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QN 618 VG+ A +LA ++ + ++ ++ + D+ LS + +G +A +I++F+ +N Sbjct: 512 VGSSGAIALADHFGT-------LDKVMKASLDELLS---IEGIGQKVAASIIDFFSKTEN 561 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 IC ++ L + P + + + ++ K V TGTLQ++ R +A+E + LG +S Sbjct: 562 VEEICRMQELGVRILPK----QVDRWAPLQGKIFVLTGTLQEMTRLQAEERIRSLGGKIS 617 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +S+ T ++VG GSKL+KAQ+LGV+++ E L +L Q Sbjct: 618 SSVSKNTYAVVVGREAGSKLKKAQELGVQVLEESDLLKILNQ 659 >gi|319902123|ref|YP_004161851.1| DNA ligase, NAD-dependent [Bacteroides helcogenes P 36-108] gi|319417154|gb|ADV44265.1| DNA ligase, NAD-dependent [Bacteroides helcogenes P 36-108] Length = 665 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 231/709 (32%), Positives = 382/709 (53%), Gaps = 54/709 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A++++ L ++ H+ YY + P I D E+D++ R + +P+ +D + P Sbjct: 3 AKEKIDQLRADLHRHNYNYYVLNAPEISDKEFDSMMRDLQNLEKEYPEY---QDNSSPTM 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKID 135 ++G ++N + +V H P LSL ++ ++ F R+ K+ N F E K D Sbjct: 60 RVGSDLNKNFTQVMHKYPMLSLGNTYSENEVTDFYDRV-----KQSLNEDFEICCELKYD 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 GT I++ YE GK V A RGDG G+DV+ ++ I TIP +L N P++ E+RGE+ + Sbjct: 115 GTSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLLLHGNYPKLFEIRGEILMPW 174 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254 F ALN+E A +ANPRNAASG L+ N + +R L+ +++ L E+ G Sbjct: 175 KSFEALNNEREAREETLFANPRNAASGTLKLQNSAVVASRKLDAYLYYL-LGEELPCNGH 233 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ GF ++ +++ ++ I Y + + R L DG+V KV+ QK Sbjct: 234 YENLQMAASWGFKISEHMKKVHSLEEIFEYISFWDTERKNLSVATDGIVLKVNSLKQQKN 293 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LH Sbjct: 294 LGFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGTITPVANLDPVQLSGTVVKRASLH 353 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + R + F + Sbjct: 354 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVNKEARGMLLGEKVKFITH 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C SR++R G+ AAH C AC Q +++HF+ R A +I+GLG + +D Sbjct: 403 CPECGSRLIR----YEGE--AAHYCPNETACPPQIKGKIEHFICRKAMDIDGLGPETVDT 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I+ AD++ L+ I+ + G+ S N+ + I + + ER Sbjct: 457 FYR----LGLIKDAADLYNLK------ADDIKGLDRMGEKSAENIINGITASKEVPFERV 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VG +A+ +AK ++ + A N + LI + +G+ IA++IV Sbjct: 507 LFALGIRFVGETVAKRIAKSFIDIEELA----------NANLEVLINIDEIGEKIAKSIV 556 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ NP N VE LK+ + + E+++ + + + +V +G R + + + Sbjct: 557 TYFCNPSNRKLVER-LKDAGLQLFQKEEDLNEYTDRLAGQSIVISGVFTHHSRDEYKILI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G + +S KT+ I+ G+N G +KLEKA++LG+KIMNE++FL L+ Sbjct: 616 EKNGGKNTGSISAKTNFILAGENMGPAKLEKARKLGIKIMNEDEFLALI 664 >gi|257065343|ref|YP_003145015.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476] gi|256792996|gb|ACV23666.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476] Length = 708 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 233/726 (32%), Positives = 382/726 (52%), Gaps = 57/726 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A ++ + + +L +EI +H YY P I D+ +D+L R + A P D Sbjct: 13 AATVSDVKARIDALRKEIEHHTYLYYAKDAPEISDAAFDSLMRELRELELANPQYI---D 69 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P P ++GG + V H++ SL+ +++L +++ R + + + F Sbjct: 70 PTSPTQRVGGYVGEQFSPVRHAVRMYSLDNAMGLDELDEWLARTL----EAIGHPVQFCC 125 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI----- 184 E KIDG+ I + YE G AA RGDG +GEDV+ +R + IP R+ + + Sbjct: 126 ELKIDGSSIALTYEAGVLTKAATRGDGTTGEDVTVNMRTVRDIPLRLRDDGMAGLRDSDA 185 Query: 185 -IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVH 241 IEVRGEVY+ K+ F LN A G++ +ANPRNAA+G LR+ +P IT R L F++ Sbjct: 186 SIEVRGEVYMPKSSFEKLNAAAEATGKQGFANPRNAAAGSLRQKDPK-ITQNRDLATFLY 244 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + + I A+ Q ++L+ +R GF VN V+ +T + + ++ R +LPY IDG Sbjct: 245 AIADDAPIRAESQNDLLEWLRDCGFHVNPDVKLCDTPQEVHDFCEQVAEKRDSLPYGIDG 304 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KV++F+ Q+ +G AR+PRW I++KF ++ +T + DI +Q+GRTG TPVA L+PV Sbjct: 305 VVVKVNDFATQRDMGFTARAPRWAIAYKFPPEEKTTVMHDITVQVGRTGACTPVAELDPV 364 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ + ATLHN D ++ +D+R+GD V+V++AG+VIP+++ +++ R Sbjct: 365 LVDGSTVARATLHNLDEVR-----------RKDVRIGDTVIVRKAGDVIPEILGPVLSLR 413 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 A+P+ P+ CP C S +VR+ AA RC + C AQ +ERL H+ SR A Sbjct: 414 PEGAKPWEMPATCPSCGSPLVREEGE------AAFRCV-SIDCPAQAMERLIHWASRGAM 466 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS--TTKIE---NILGFGDVSVT 536 +I+G+G + + +S + AD + L + T +I + G Sbjct: 467 DIDGMGDEIVARLVES----GRVLDVADYYNLTEYDLATLETGRINKEGEPIHLGGTIAA 522 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 L S+ ++ + R +F LGIRHVG ++A Y S + Sbjct: 523 KLMASLEASKSRTFARVLFGLGIRHVGKTTGEAIAAAYPSMEKLMNATEE---------- 572 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFT 655 L +V +G +IA++IV F N + L + V+ + E ++ + V T Sbjct: 573 GLAQVDGIGAVIAKSIVTFLATEDNREVIHRLERAGVTMADEVKESDIPQTLAGITFVLT 632 Query: 656 GTLQK--IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 G+L + + R +A + + +GA VS +S+KT ++ G+ GSK +KA QLGV ++ E + Sbjct: 633 GSLTESGMTRTEAGDRLKAMGAKVSGSVSKKTGYVVAGEAAGSKYDKAVQLGVPVLTEAE 692 Query: 714 FLFLLQ 719 FL LL+ Sbjct: 693 FLRLLE 698 >gi|317477010|ref|ZP_07936252.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA] gi|316906803|gb|EFV28515.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA] Length = 666 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 237/709 (33%), Positives = 375/709 (52%), Gaps = 55/709 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L ++ H+ YY + P I D E+D + R + P+ +D N P + Sbjct: 4 KERIDQLRTDLHRHNYNYYVLNTPEISDKEFDDMMRELQDLEKEHPEY---QDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136 +G ++N + +VTH P LSL ++ ++ F R+ KK N F E K DG Sbjct: 61 VGSDLNKNFTQVTHKYPMLSLGNTYSENEVTDFYDRV-----KKALNEDFEICCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195 T I++ YE GK V A RGDG G+DV+ ++ I TIP VL N PE E+RGE+ + Sbjct: 116 TSISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRTIPLVLHGNNYPEHFEIRGEILMPW 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A +ANPRNAASG L+ N + +R L+ +++ L E+ G Sbjct: 176 EVFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGEELPCDGH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE LQ GF ++ ++ ++ + Y + R LP DG+V KV+ QK Sbjct: 235 YENLQTAAGWGFKISEHTKKTHSLEEVFEYIRYWDTERKNLPVATDGIVLKVNSMRQQKS 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LH Sbjct: 295 LGFTAKSPRWAIAYKFQAERALTRLNRVTYQVGRTGAITPVANLDPVQLSGTIVKRASLH 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433 N D I+GL D+ +GD V V++ GE+IPK+ + + R + F + Sbjct: 355 NADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARGMLIGEKVKFITH 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S++VR G+ AAH C AC Q +++HF+SR A NI+GLG + +D Sbjct: 404 CPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDT 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F++ I+ AD++ Q + I+N+ G+ S N+ I + + ER Sbjct: 458 FYR----LGLIKDTADLY------QLTAEDIKNLDRMGEKSAENIIKGIKASKEVPFERV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VG +A+ +AK + NNI N D L + +G+ IAQ+I+ Sbjct: 508 LFALGIRFVGETVAKKIAKSF----------NNIEELENADLEKLTSIDEIGEKIAQSIL 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ +P N+ +E LK + R E+++ + ++ + +V +G R + ++ + Sbjct: 558 IYFSSPLNVNLIER-LKSAGLQLYRKEEDLNEYTDKLAGQSIVISGVFTHHSRDEYKDLI 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S KT I+ G+N G SKLEKA +LG+KI++E++FL L+ Sbjct: 617 EKNGGKNVGSISTKTSFILAGENMGPSKLEKAHKLGIKIISEDEFLTLI 665 >gi|213968905|ref|ZP_03397045.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1] gi|301385372|ref|ZP_07233790.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato Max13] gi|302063632|ref|ZP_07255173.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato K40] gi|302133897|ref|ZP_07259887.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926204|gb|EEB59759.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1] Length = 787 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 224/633 (35%), Positives = 343/633 (54%), Gaps = 50/633 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ A + L E+ H+ Y+ +P I D+EYD L A+ P L P+ Sbjct: 1 MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H + LSL + DLR+F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP ++ PE++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ + IT R L F +GLG Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLG 236 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 +TS A +L+ ++ G PV+ ++ A+ ++YY ++ R +L Y+IDG+V+ Sbjct: 237 QTSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVF 296 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + Sbjct: 297 KVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVA 356 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++V R Sbjct: 357 GVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPET 405 Query: 425 AQPFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSR 478 A+P P CP+C S V R + GK A +RC G LAC AQ + + H+VSR Sbjct: 406 AKPVEVPQSCPVCGSHVERTQLVKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSR 465 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +IEGLG + ++ + I PAD++ L+ Q I ++ GF ++S L Sbjct: 466 RAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKL 515 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I R +L RFI++LGI VG E A+ LA+ S Q + ++ + Sbjct: 516 LKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY-------- 567 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +P VG +A I F+++ N +EALL E Sbjct: 568 --LPDVGLEVAYEIHSFFEDEHNRNVIEALLGE 598 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + A + DWL + + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRF----------GTLEAVISADWLDMRQT--LPE 663 Query: 607 IIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ N A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDNANAERARAIEAQLKD----FGMHWRSEKKAVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++EE L L Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEEALLKRL 779 Query: 719 QQYNTTL 725 + + Sbjct: 780 TELGVAV 786 >gi|313159317|gb|EFR58681.1| DNA ligase (NAD+) [Alistipes sp. HGB5] Length = 694 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 228/705 (32%), Positives = 378/705 (53%), Gaps = 51/705 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ + L +++ YH+ YY + P I D E+DA+ R + A P++A DPN P + Sbjct: 3 RERIEELRRQLEYHNFRYYVENAPEISDFEFDAMMRELQDLERAHPEMA---DPNSPSVR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ V H P LSL ++ ++L +FI RI +K+ F E K DGT Sbjct: 60 VGSDITAEFRSVKHRFPMLSLGNTYSPDELHEFIERI-----EKETGPTEFVCELKFDGT 114 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++ YE G+ + A RGDG G+DV+A +R + T+P R+ + P+ E+RGE+ + Sbjct: 115 AISLTYEHGRLLRAVTRGDGTQGDDVTANVRTVRTVPLRLRGDDWPDYFEIRGEILMPYA 174 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQY 255 F +N E A G +ANPRNAA+G L++ + R L+ ++ L F + Sbjct: 175 SFDKINAEREAAGETLFANPRNAAAGTLKQQASAVVARRGLDCTLYQLAGDDLPFTN-HW 233 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQK R GF +++ +R + I +Y R LP+ DG+V KV++F +++QL Sbjct: 234 ESLQKAREWGFKISDQMRICRSAEEIDAYIAHWDEARRELPFPTDGVVIKVNDFGVRRQL 293 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A++P+W +++KF +QA TRL + Q+GRTG +TPVA LEPV + G + ATLHN Sbjct: 294 GFTAKAPKWAVAYKFKAEQALTRLDSVAFQVGRTGAITPVANLEPVLLAGTTVRRATLHN 353 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 + + L DIR GD V V++ GE+IPK+ + +++R D++PF + + CP Sbjct: 354 AEQMALL-----------DIRPGDMVYVEKGGEIIPKITGVELSQRPADSRPFEYITVCP 402 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +V+ G+ A H C C Q + R+ HF+ R A +IEGLG++ ++ + Sbjct: 403 ECGTPLVK----YEGE--AKHYCPNQGGCRPQIIGRIIHFIRRKAMDIEGLGEETVELLY 456 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 ++ +R AD++ LQ Q ++ G+ S N+ SI + R +F Sbjct: 457 ENG----LVRDVADLYDLQAPQLACLPRL------GEKSADNIIRSIRGSVEVPFRRVLF 506 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR VG A+ LA+++ S ++ ++ ++ L VG IA AI+E+ Sbjct: 507 GLGIRFVGETTAKYLAEHFRS-------LDAVMKATREE---LTEADEVGGRIADAIIEY 556 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + + +N+ A+ L++ + ++SE + K V +G R + +E + G Sbjct: 557 FADEKNL-AIIRRLRDAGVKFEAEARELASESLAGKSFVISGKFSNHSRDELKELIEIHG 615 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 A +S D I+ G+N G +KL+KA++LGVKI++EE F+ ++ Sbjct: 616 GRNLAAVSANVDYIVAGENMGPAKLKKAEKLGVKIISEEDFIAMI 660 >gi|86742328|ref|YP_482728.1| DNA ligase, NAD-dependent [Frankia sp. CcI3] gi|123750794|sp|Q2J6U3|DNLJ_FRASC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86569190|gb|ABD12999.1| DNA ligase, NAD-dependent [Frankia sp. CcI3] Length = 706 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 236/707 (33%), Positives = 361/707 (51%), Gaps = 60/707 (8%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 SL +E+ H YY P I D+EYD L A+ PDL P+ P K+ G Sbjct: 28 SLARELDEHAYRYYVLDSPTISDAEYDRLMAELAALEERHPDL---RTPDSPTQKVAGSY 84 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + V H LSLE +++ ++ ++ R+ R + + E KIDG + + Sbjct: 85 STLFTPVEHLERMLSLENVFDDDEFHQWAARVAR-----ESEVDAWLCELKIDGLAVDLV 139 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLAL 201 YE G V AA RGDG +GED++ IR + ++P R+ +P ++EVRGEV+ F L Sbjct: 140 YEDGYLVRAATRGDGRTGEDITPNIRTLASVPVRLRGPRVPGLLEVRGEVFFPTAKFAEL 199 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 N ++AVG KP+ANPRNAA+G LR+ +P TR L VHGLG Q + Sbjct: 200 NAGLVAVGGKPFANPRNAAAGSLRQKDPRVTATRPLEMIVHGLGAQRGFEVTSQSAAYAR 259 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 LG PV T G++ Y + R + ++IDG+V KVD F+LQ++LG ++ Sbjct: 260 FAELGLPVATHFEVLATVPGVLDYVHRWGDARHDVVHEIDGVVVKVDSFALQRRLGSTSK 319 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 SPRW +++K+ ++ +T+L DI + +GRTG +TP LEPV + G+ + ATLHN D + Sbjct: 320 SPRWAVAYKYPPEEVTTKLRDIRVNVGRTGRVTPFGELEPVLVAGSTVGLATLHNIDEV- 378 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 G + + +GD V++++AG+VIP++V +V+ R + F P+ CP C + Sbjct: 379 ----------GRKGVLIGDTVVLRKAGDVIPEIVGPVVDLREGSERAFVMPTRCPECGTE 428 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 +VR P+ + RC ++C AQ E + HF SR A +I+GLG + + Sbjct: 429 LVR---PEGEVDI---RCPNTVSCPAQLRESIFHFASRGAMDIDGLGYETATALLE---- 478 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 A +R DIF L + E + GF + + + R+ L R + L IR Sbjct: 479 AGRVRDIGDIFHL------TPESFEGLRGFAQKKIDQILRGVEAARHRPLWRLLVGLSIR 532 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 HVG AR+LA+ S + A A + +D L V VG IA A+++++ + R Sbjct: 533 HVGPTAARALARELRSLEAIA-------ATSAED---LAAVEGVGPKIAGAVLDWFADER 582 Query: 621 N------ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + I A A L +V G ++ +V TGTL R A+E V G Sbjct: 583 HRDILARIAAGGARLADVGAEEG------PRPLDGVTVVITGTLTDWSRDSAKEAVEARG 636 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 V+ +SRKT ++VG +PG SK +KA+ L + +++E F LL Q Sbjct: 637 GKVTGSVSRKTTAVVVGADPGASKYDKARSLRIPMLDEAGFAVLLAQ 683 >gi|77458028|ref|YP_347533.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf0-1] gi|123731132|sp|Q3KFB2|DNLJ_PSEPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77382031|gb|ABA73544.1| DNA ligase [Pseudomonas fluorescens Pf0-1] Length = 785 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 219/631 (34%), Positives = 341/631 (54%), Gaps = 56/631 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A+ + L E+ H+ Y+ +P I D+EYD L A+ A P+L S+ P Sbjct: 4 AKDRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITSDSPT---Q 60 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTL 130 ++G + +V H +P LSL + D+R+F R+ + ++ ++ Sbjct: 61 RVGSVALTAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPAGDLFGGGAAVEYSC 120 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189 EPK+DG +++ Y+ G V A RGDG +GED+S +R + IP ++ P +EVRG Sbjct: 121 EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLEVRG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247 EV++SK F LN + VG K +ANPRNAA+G LR+L+ + IT R L F +G+G+ S Sbjct: 181 EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGIGQVS 239 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + LQ+++ G P+++ ++ A + YY ++ R++L Y+IDG+V+KV+ Sbjct: 240 HDISDTHIGNLQQLKAWGMPISHELKLAKGIGECLDYYRDIGERRNSLAYEIDGVVFKVN 299 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G Sbjct: 300 SIADQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVT 359 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + NATLHN D + L + +GD V+++RAG+VIP+VV +++ R DA+P Sbjct: 360 VANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVMERRPEDARP 408 Query: 428 FSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAF 481 P CP+C S V R + GK A +RC G LAC AQ + + HFVSR A Sbjct: 409 VQIPESCPVCGSHVERTQLVKRSKGKETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAM 468 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNL 538 +IEGLG + ++ D + PAD++ L K E+I+ GF +VS L Sbjct: 469 DIEGLGDKSVEQLV---DEGL-VSSPADLYAL---------KFEDIVDLEGFAEVSSNKL 515 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I + L RFI++LGI VG E A+ LA+ S + Q + ++ + Sbjct: 516 LAAIEDSKKPGLARFIYALGIPDVGEETAKVLARSLGSLERVQQALPQVLTY-------- 567 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 +P +G +A I F+++ N + LL Sbjct: 568 --LPDIGLEVAHEIHSFFEDAHNRQVITELL 596 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 18/183 (9%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L F+ L I VG A+ LA + S + N DWL + + + + Sbjct: 615 STTLGGFLDKLHIPSVGPGGAQKLADKFESLEGVM----------NADWLDMRQA--LPE 662 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKI 661 A ++ EF+ P + E K++ G H ++ +E L V TG ++ + Sbjct: 663 KQANSVREFFALPEHRQLAEDAEKQLR-DFGMHWQSEKKVVEGLPLAGETWVLTGKVELM 721 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R A+E++ LGA V+ +S KT ++ G GSKL KA +LGVK+M+EE F+ L+ + Sbjct: 722 SRDVAKEHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVMDEEAFIAFLKGH 781 Query: 722 NTT 724 + Sbjct: 782 GIS 784 >gi|282856148|ref|ZP_06265431.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455] gi|282585907|gb|EFB91192.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455] Length = 681 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 239/703 (33%), Positives = 369/703 (52%), Gaps = 58/703 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E++ H YY P I D EYDAL R PDL R + P+ ++GG + Sbjct: 15 LVDELNRHGRLYYVLDAPEIEDDEYDALMREMLQFEREHPDLIRDDSPS---KRVGGAVL 71 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITR----IYRFWQKKDDNSIFFTLEPKIDGTMI 139 + KVTH+ P LSLE +++ +L ++ R + + W I + E KIDG + Sbjct: 72 DAFEKVTHAKPMLSLEDVFSKNELHDWLQRAAEGVGQPW-------IPWCCELKIDGLAV 124 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ +E GKFV A+ RGDG GEDV+ ++ + +P L ++P +E+RGEVY+ K+ F Sbjct: 125 SLIFEDGKFVQASTRGDGVVGEDVTENLKTVKDLPLRLLGDVPGHLELRGEVYMGKDGFA 184 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN G +ANPRNAA+G LR+L+ + R L F + + Q E+L Sbjct: 185 QLNAAREEAGLPLFANPRNAAAGSLRQLDTSVAAKRNLRLFTYYVQDAESYGLHSQSEIL 244 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + ++ G PV R+A T + + R +LPY DG V+K D LG Sbjct: 245 EWLKARGLPVQKAWRRAETETEALDFLERWSGERFSLPYATDGAVFKADATEYWTVLGNN 304 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++PRW +++K+ ++ T+L I+I +GRTG+LTPVA LEPV + G ++ A+LHN++ Sbjct: 305 VKTPRWAVAYKYPPEERKTKLESIEISLGRTGVLTPVANLEPVLLSGTVVKRASLHNDEE 364 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I+ +DIRVGDRV V++AGE+IP++V + V R +PF+ P+ CP+C Sbjct: 365 IQ-----------RKDIRVGDRVWVRKAGEIIPEIVRVDVASRTGTEEPFAMPATCPVCG 413 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + V + G++ A RC +C AQ + L HF SR NI+GLG + + +S Sbjct: 414 AAVAK----LPGEV--ALRCL-NRSCPAQLTQGLIHFASRQGMNIQGLGDRLAEQLVRSG 466 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 ++ +D++ L+ ++ G+ S L +I K + L+ I +LG Sbjct: 467 ----LVKNFSDLYALRVEPLVRLDRM------GEKSAGKLLQAIAKSKERPLKFLITALG 516 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IR VGA +A LAK + S ++ I A + + L V VG +IA +I F+ Sbjct: 517 IREVGAGVAAELAKRFSS-------LDEIAAADEE---RLAAVEGVGPVIAGSIKTFFGE 566 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEI---ENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 N ++ L+E S+ R E + I K VFTG L ++ R +AQE VTQ G Sbjct: 567 EHNRRLIDG-LREAGVSM-RSETAPEAPIGPLAGKTFVFTGELSRMSRAQAQELVTQRGG 624 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S+KT ++VG+ PG K EKA +L V +NEE+F ++ Sbjct: 625 KSVNSVSKKTSYVVVGEAPGGKAEKALRLNVPTLNEEEFFAMI 667 >gi|332705189|ref|ZP_08425270.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L] gi|332355932|gb|EGJ35391.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L] Length = 1092 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 241/742 (32%), Positives = 382/742 (51%), Gaps = 84/742 (11%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + Q +EL L Q SY YY PI+ D+ YD L R + +P+L S+ P Sbjct: 8 VNQRIQELRRLLQNASY---AYYVLDNPIMADAIYDQLYRELQELETEYPELVTSDSPT- 63 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------ 127 ++G + V H+IP SL+ +N+E+ ++ R WQ+ I Sbjct: 64 --QRVGEKPATGFVSVRHNIPLYSLDNAFNLEEFSQWQER----WQRHISGDISQDSGFN 117 Query: 128 --FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----- 180 + E KIDG+ + + YE G V RGDG +GED++ +R I +IP L+L+ Sbjct: 118 TEYVCELKIDGSALALTYENGILVRGVTRGDGSTGEDITQNVRTIRSIPLRLNLDQLNLD 177 Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNF 238 +P ++EVRGE ++ + F +N E G +ANPRNAA+G LR+L P + R L F Sbjct: 178 QLPALVEVRGEAFLPLDVFERINQERAQAGEPLFANPRNAAAGTLRQLEPRIVAKRQLAF 237 Query: 239 FVHGL----GKTSEIFA----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290 F + L +SE + Q++ L+ ++ LGFPVN + + + YYN + Sbjct: 238 FAYTLHIPNQDSSEEYTIPMPNCQWDALELLQKLGFPVNPHRQCCASLQDVQDYYNYWDA 297 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R LPY DG+V K++ F +Q+QLG + PRW I+ K+ ++A +R+ I + +GRTG Sbjct: 298 RRQDLPYLTDGVVVKINAFGIQQQLGFTQKFPRWAIALKYPAEEAPSRVEAITVNVGRTG 357 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TP+A LEPV + G + A LHN DY+ L D+RVGD V+V++AGE+I Sbjct: 358 AVTPLAILEPVQLAGTTVQRAALHNGDYVAQL-----------DLRVGDTVIVRKAGEII 406 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+VV ++ R A+PF P+ CP+C +VR PK G+ A RC +C A Sbjct: 407 PEVVRVLPELRPDHAKPFEMPTHCPVCSQPLVR---PK-GE--AVTRCINS-SCPAIVKG 459 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 L H+ SR+A +I GLG++ ++ D + AD++ L Q S ++ + L Sbjct: 460 TLTHWASRNALDINGLGEKIVEQLV---DQGLVTSV-ADLYDLTLDQLVSLERMGHKLA- 514 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ----EINN 586 L ++I K + R ++ LGIRHVG+ A++L + + + + AQ +I Sbjct: 515 -----QKLLNAIAKSKTQPWSRVLYGLGIRHVGSVNAQTLVQTFPTIEQLAQATVTDIEG 569 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 I +G IAQ++ ++Q N + A L+E + K ++ + Sbjct: 570 IYG--------------IGPEIAQSVWGWFQISSNQTLI-ARLREAGLQLEASTKTIALD 614 Query: 647 ----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 + K V TGTL ++R A++ + G V++ +S KTD ++VG++ GSKLEKAQ Sbjct: 615 QTQPLTGKTFVITGTLPTLKRSDAKDLIQNAGGKVTSAVSAKTDYLVVGEDAGSKLEKAQ 674 Query: 703 QLGVKIMNEEQFLFLLQQYNTT 724 +LG+ + E Q L Q++ T Sbjct: 675 KLGITQLTESQLLVKSQKFPAT 696 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 123/255 (48%), Gaps = 33/255 (12%) Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L H+ SR A +I GLGK+ ++ D + AD++ L Q S G G Sbjct: 863 LTHWASRYALDINGLGKKIVEQLV---DQGLVTSV-ADLYNLTLEQLVSLN------GIG 912 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ----EINNI 587 L ++I K + R ++ LGIRHVG+ A++L + + + + AQ +I I Sbjct: 913 HKLAQKLLNAIAKSKTQPWSRVLYGLGIRHVGSVNAQTLVQTFPTIEQLAQATVTDIEGI 972 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---- 643 +G IAQ++ ++Q N + A L+E + K + Sbjct: 973 YG--------------IGPEIAQSVWGWFQISSNQTLI-ARLREAGLQLEASTKTIALDK 1017 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 S + K V TGTL ++R A++ + G V++ +S KTD ++VG++ GSKLEKAQ+ Sbjct: 1018 SLPLTGKIFVITGTLPTLKRSDAKDLIQNAGGKVTSAVSAKTDYLVVGEDAGSKLEKAQK 1077 Query: 704 LGVKIMNEEQFLFLL 718 LG+ + E Q L LL Sbjct: 1078 LGITQLTESQLLDLL 1092 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 28/171 (16%) Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 LA + Q L H+ SR+A +I GLGK+ ++ D + AD++ L Q S Sbjct: 704 LAGTKVQQRALTHWASRNALDINGLGKKIIEQLV---DQGLVTSV-ADLYDLTLEQLVS- 758 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 + G G L ++I K + R ++ LGIRHVG++ A++LAK + + + A Sbjct: 759 -----LKGIGYKLAQKLLNAIAKSKTQPWSRVLYGLGIRHVGSDKAKTLAKKFRNIEQLA 813 Query: 582 Q----EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 Q +I I + +G IA+++ +++QN N ++ L Sbjct: 814 QATIPDIEGIYS--------------IGPKIAKSVRDWFQNSSNQTLIDRL 850 >gi|218961271|ref|YP_001741046.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans] gi|167729928|emb|CAO80840.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans] Length = 667 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 238/713 (33%), Positives = 380/713 (53%), Gaps = 59/713 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + + L EI +H+ YY +KP I D EYD L + + + + A E P Sbjct: 5 ELKARIDRLRAEIEHHNRLYYTLAKPEISDYEYDMLVKELQELEAQYAEGAVEESPT--- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G ++ + H + SLE +++E++ FI R + + E KID Sbjct: 62 QKVGSDLTPGAKTIPHKVRMASLENAYSLEEVLAFINRTNNDLGYASE----YCAELKID 117 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + YE G F+YA RGDG GEDV+ R +P +P +++ IE+RGE+YI Sbjct: 118 GFSINLYYENGNFIYATTRGDGLEGEDVTENFRLLPDVP--FTIDYKGAIEIRGEIYIPV 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK-------TS 247 DFLALN+ K +ANPRNAA+G ++ + ++ +R+L + LG + Sbjct: 176 QDFLALNEFRRENELKTFANPRNAAAGSIKLKSREEVKSRHLKALFYALGYYETPLQYKN 235 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 EI K Q +L + LGFP + + + +M+ R T+PYDIDG+V KV+ Sbjct: 236 EIIDK-QTRLLDFLDELGFPTSKRTL-CKHYQEAEKFCLQMEQERYTIPYDIDGIVIKVN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 QK+LG A+SP+W I++KF ++ T L + Q+GRTG +TPVA L+PV I G+ Sbjct: 294 SLEDQKKLGWTAKSPKWAIAYKFKPEEKETVLESVSFQVGRTGAVTPVANLKPVFISGST 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +++ATLHN D IK L D+ GD VLV ++GE+IPK++ + V++R +A+P Sbjct: 354 VSHATLHNADEIKRL-----------DLHYGDTVLVVKSGEIIPKILSVNVSKRPVNAKP 402 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 FP+ CP+C + + RD + A+ C AQ +L+HF SR+A +I GLG Sbjct: 403 VIFPATCPVCNAPLQRDEDGSINYCPNAN-------CPAQIQRKLEHFASREAMDIYGLG 455 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ I+ DI+ L KI + G S NL +I + Sbjct: 456 SSLIARLIETG----QIKWIPDIYHL------DYNKIAEMERMGKKSADNLQKAIEASKT 505 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + +R +F+LGIRH+G+ AR+LA+++ + I+ +I ++ LS VP +G I Sbjct: 506 KNFDRVLFALGIRHIGSITARTLAQHF-------KNIDALIMAKEEELLS---VPDIGSI 555 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IA++I+ F+ N +++ L++V S+ + K + TGTL R + Sbjct: 556 IARSIIGFFSQKSNRELIDS-LRKVGLQFTYISPQSSAILAGKTFLITGTLPNYSRKDME 614 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719 +T+ G + + +S++ + +IVG+NPGSKL+KA QLG VKI++E + L +LQ Sbjct: 615 TLITEHGGKILSGVSKQLNYLIVGENPGSKLDKAHQLGTVKIISEAELLDMLQ 667 >gi|226357440|ref|YP_002787179.1| NAD-dependent DNA ligase [Deinococcus deserti VCD115] gi|254778147|sp|C1D1Y6|DNLJ1_DEIDV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|226319430|gb|ACO47425.1| putative NAD-dependent DNA ligase [Deinococcus deserti VCD115] Length = 686 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 238/707 (33%), Positives = 364/707 (51%), Gaps = 51/707 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L Q+++ H+ YY+ P I D EYDAL R + P+ A P P +GG + Sbjct: 14 LTQKVAEHNRRYYEEDAPTIPDFEYDALVRELRELEARHPEFAA---PTSPAQTVGGRPS 70 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMITIR 142 KV H P SL+ ++ +L F ++ R + F +T E KIDG I + Sbjct: 71 TLFEKVRHPTPMTSLDNAFSDAELAHFDDKVARALNLPPGSRTFTYTCELKIDGLSINLY 130 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 Y G +AA RGDG GE V+A I IP IP L + +EVRGEVY+SK FLA N Sbjct: 131 YVDGILQWAATRGDGEVGEKVTANIEGIPGIPTQLP-GLQGELEVRGEVYMSKATFLAYN 189 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKM 261 + GR NPRN A+G LR+ +P + R L ++ LGK + + Q+++L+ + Sbjct: 190 LKAEEEGRPLLKNPRNGAAGALRQKDPAETRRRGLEVILYALGKRDGVPVRTQWDILEWL 249 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 R GF + R+ +Y+ EM + R LP+D DG V K+D+ LQ+ G +R+ Sbjct: 250 RAQGFATSEYARRVTGSEAAAAYHAEMTAQRPQLPFDADGSVVKLDDLRLQEDAGYTSRA 309 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 P+W +++KF A T + I IQ GRTG LTPVA L PV + G + ATLHNED+I+G Sbjct: 310 PKWAVAYKFPADVAQTVIEAITIQTGRTGKLTPVAELRPVLLEGTTVARATLHNEDFIRG 369 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 L D+ VGD V V ++G +IP+V+ +++ +R + P++FP+ CP+C Sbjct: 370 L-----------DLHVGDTVRVHKSGGIIPEVLGVVLEQRPEGSTPYAFPTHCPVCGHEA 418 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 VR A CT AC A+ R+++F SRD +I+GLG++ ++ A Sbjct: 419 VRHEG------AAGTFCT-NPACPAKSTLRVRYFASRDVMDIKGLGERLVEQLVD----A 467 Query: 502 FSIRIPADIFTLQRRQ----QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 +R PAD++ L Q + T + G + L I + L R SL Sbjct: 468 GLVRDPADLYALTAEQIEHLEMGETTTGGVRRVGRKNAEKLVAEIEASKTRELWRVFRSL 527 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G+ +VG A +A+ Y S ++ Q + DD L R+P VG +A+ IV+ + Sbjct: 528 GLPYVGEGTATRIARVYRSLEDIRQA-------SVDD---LARIPDVGRQVAEGIVQGLR 577 Query: 618 NPRNICA----VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + ++CA + A + +PS+ + V ++ V TGTL + R + ++ Q Sbjct: 578 D-ADMCAYLDRLTAAGVQPTPSV---DVRVGEQLAGLTFVVTGTL-SVPRDVIKLHLGQY 632 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GA VS +++KT +I G++ GSKLEKA +L V +++E LL + Sbjct: 633 GARVSGSVTKKTSYLIAGEDAGSKLEKATELKVPVLDEAGLQKLLAE 679 >gi|149911742|ref|ZP_01900348.1| NAD-dependent DNA ligase [Moritella sp. PE36] gi|149805167|gb|EDM65187.1| NAD-dependent DNA ligase [Moritella sp. PE36] Length = 482 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 209/507 (41%), Positives = 297/507 (58%), Gaps = 36/507 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQA K++ +L ++ ++ YY P + D+EYD L R + FP+LA + P Sbjct: 3 EQA-KQIQTLTLQLEEYNHQYYVLDNPTVPDAEYDRLLRELKQLETEFPELALA---TSP 58 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPK 133 K+GGE ++ H IP LSL+ +++ E+L F R+ R K + I F+ EPK Sbjct: 59 TQKVGGEALTGFSQIQHEIPMLSLDNVFSAEELLAFEKRLQDRLLTKAE---IKFSCEPK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G FV AA RGDG GED+S ++ I +IP R+ + PE +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVFVRAATRGDGQIGEDISENVKTIKSIPLRLRGNDFPERLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIF 250 + K F LN G K + NPRNAA+G LR+L+P +R L F + LG E+ Sbjct: 176 MPKAGFDLLNVNAKKKGEKTFVNPRNAAAGSLRQLDPKIAASRPLAFNAYSLGVVEGEVE 235 Query: 251 AKG----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 KG E LQK++ G PV V A + G + +Y ++ R +L YDIDG+VYKV Sbjct: 236 GKGLSNSHAENLQKLKLWGIPVCADVTVAMGYQGCLDFYEQIGERRDSLSYDIDGVVYKV 295 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQK LG AR+PRW SHKF ++ T LLD++ Q+GRTG +TPVARLEPV +GG Sbjct: 296 DDLALQKTLGFVARAPRWATSHKFPAQEEITTLLDVEFQVGRTGAITPVARLEPVFVGGV 355 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++NATLHN D I L I++ D+V+++RAG+VIP+V +++ R DAQ Sbjct: 356 TVSNATLHNSDEIARL-----------GIKIKDQVIIRRAGDVIPQVARVMLERRPDDAQ 404 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP+ CP+C S V R T RCT GL C AQ+ E +KHF SR A N++GL Sbjct: 405 DIVFPATCPVCDSEVERIEGEAT------VRCTAGLYCGAQRKEAIKHFASRKALNVDGL 458 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTL 513 G + ++ ++ I+ PAD+FT+ Sbjct: 459 GDKLVEQLVDAD----LIKTPADLFTV 481 >gi|60681965|ref|YP_212109.1| putative DNA ligase [Bacteroides fragilis NCTC 9343] gi|81314971|sp|Q5LCI0|DNLJ_BACFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|60493399|emb|CAH08185.1| putative DNA ligase [Bacteroides fragilis NCTC 9343] Length = 665 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 235/707 (33%), Positives = 373/707 (52%), Gaps = 52/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L ++ H+ YY + P I D E+D L R + P+ +D N P + Sbjct: 4 KEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK + A RGDG G+DV+ ++ I +IP VL N PE+ E+RGE+ + Sbjct: 117 SISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F ALN E A +ANPRNAASG L+ N + +R L+ +++ L + G Y Sbjct: 177 VFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF ++ +R+ T + + N R L DG+V KV+ Q+ L Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R G+ AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I AD++ Q +T I + GD S N+ I + + + ER IF Sbjct: 459 R----LGLIHDTADLY------QLTTDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVIF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + +I N D +LI + +G+ IA++I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSF----------KDIEELENADLETLINIDEIGEKIARSILNY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + N N V+ LK + R E+++S ++ + +V +G R + ++ + + Sbjct: 559 FANESNRKLVDR-LKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEK 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ GDN G +KLEKA +LG+KIMNEE+FL L+ Sbjct: 618 HGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664 >gi|83816597|ref|YP_445022.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855] gi|123739757|sp|Q2S459|DNLJ_SALRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83757991|gb|ABC46104.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855] Length = 690 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 223/699 (31%), Positives = 379/699 (54%), Gaps = 51/699 (7%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 + +H+ YY P++ D+EYD L ++ + +P L + P+ P +++GG + L Sbjct: 32 LRHHNYRYYVLDAPVVSDAEYDRLFQQLQTLEAEYPVL---QTPDSPTHQVGGPVRDELG 88 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 VTH P LSL+ ++ +++R F ++ ++ + EPK DG + + YE G+ Sbjct: 89 TVTHPAPMLSLKAVYEEDEVRNFAETCREELGRE---TVTYIAEPKFDGLAVELIYEDGR 145 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALNDE 204 V A RGDG +GE+++A ++ I +P R + +P+ + VRGE Y+ K++F A N Sbjct: 146 LVQGATRGDGETGEEITANVKTIKGVPLRLRDDARPVPDRLVVRGEAYMRKDEFNAFNRR 205 Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262 G+K +ANPRNAA+G LR+L+ ++IT R L + + + E+L+ + Sbjct: 206 REEEGKKVFANPRNAAAGSLRQLD-SNITARRPLRIYFYEIAPVDGRDFATHAEVLEALP 264 Query: 263 CLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 G V + +R+ + ++++ + R LPY+IDGLV KV++F + LG R R Sbjct: 265 EWGLRVCEDHIRRCDGIDAALAHHAALVDRRDDLPYEIDGLVIKVNDFDGHETLGVRDRD 324 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++KF ++A+T + D+ +Q+GRTG +TPVA L PV +GG +T A+LHN++ I Sbjct: 325 PRWAAAYKFPPRRATTSIEDLFVQVGRTGRITPVAVLAPVEVGGVEVTRASLHNQNEID- 383 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GD VL++RAG+VIP+VV +I +ER P+ P CP+C S V Sbjct: 384 ----------RKDIRIGDTVLIERAGDVIPQVVKVIEDERDGTEAPYHIPDACPVCGSEV 433 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 V + K CTGG+ C AQ ERLKH+ SR+A +IEGLG ++ + A Sbjct: 434 VLSDDKKQAF------CTGGMTCPAQFRERLKHYASREATDIEGLGDKRAEQLID----A 483 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I+ +D++ L++ + + + D S NL D I L+RF+++LGI Sbjct: 484 GLIQTISDLYELEK------ADLLQLERYADKSAQNLIDEIEASLEQDLDRFLYALGIPL 537 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG+ AR LA+++ + + A + D +L + +G +A +I F+ + N Sbjct: 538 VGSATARLLAQHF----------DTLDALVDADEDALTTIDDIGPEVAHSIATFFADDAN 587 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 ++ +++ ++ ++ +E VFTG+L+ R Q +V Q GA ++ + Sbjct: 588 RGVIDE-MRDAGLTLTNPYAEDAARLEGLTFVFTGSLEGWTRSAVQRFVEQHGANATSSV 646 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S TD ++ G GSK + A G+ +++E+ F LL++ Sbjct: 647 SGNTDYVVAGPGAGSKRDDADDRGIPVLDEDAFHALLRE 685 >gi|289649545|ref|ZP_06480888.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi str. 2250] Length = 787 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 219/623 (35%), Positives = 335/623 (53%), Gaps = 50/623 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEVENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137 + +V H +P LSL + D+ +F R+ + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ P+++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + +G K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L+ ++ G PV+ + AN + YY ++ R TL Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLETLKKWGMPVSRELNLANGVEECLDYYRDIGERRLTLNYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L + +GD V+++RAG+VIP+VV ++ R +A+ P C Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTC 415 Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S V R + GK A +RC G LAC AQ + + H+VSR A +IEGLG Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + I PAD++ L+ Q I ++ GF ++S L +I R Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQP 525 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGI VG E A+ LA+ S Q + ++ + +P VG + Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLEV 575 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + + II+ DWL + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRHT--LPE 663 Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ + + A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L Sbjct: 720 ERMSRDVAKEKLETLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779 Query: 719 QQYNTTL 725 + + Sbjct: 780 TELGVAV 786 >gi|3800758|gb|AAC68862.1| thermostable DNA ligase [Thermus filiformis] Length = 667 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 249/719 (34%), Positives = 393/719 (54%), Gaps = 69/719 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+AR+ ++ L I YH+ YY + P I D+EYD L R + FP+ + P Sbjct: 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEF---KSP 57 Query: 72 NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G F+ V H SL+ + E++ F R+ R + +T+ Sbjct: 58 DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERLAEAPS----LYTV 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G V++ GDG GE+V+ + IPTIPR L +P+ +EVRGE Sbjct: 114 EHKVDGLSV-LYYEEG--VWSTGSGDGEVGEEVTQNLLTIPTIPRRLK-GVPDRLEVRGE 169 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLG-KT 246 VY+ FL LN+E+ G K + NPRNAA+G LR+ +P + F+ GLG Sbjct: 170 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGL 229 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E K QYE+L ++ GFPV + +A G+ Y + R LP++ DG+V K+ Sbjct: 230 EESGLKSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKL 289 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +L +LG AR+PR+ +++KF ++ TRLLD+ Q+GRTG +TPV LEPV I G+ Sbjct: 290 DDLTLWGELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGS 349 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ R + Sbjct: 350 EVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGKER 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P +P CP C R+V K GK+ HRC L C A++ E ++H+ SR A +IEGL Sbjct: 399 PIRWPEACPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIEGL 449 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSIN 543 G++ ++ + +R AD++ L++ E++LG G+ S NL I Sbjct: 450 GEKLIERLLEK----GLVRDVADLYHLRK---------EDLLGLERMGEKSAQNLLRQIE 496 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + ++ LER +++LG+ VG +AR+LA+ + + + + + Sbjct: 497 ESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEE---------- 546 Query: 604 VGDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG++ A+AI+E ++P R++ LKE S+ E+ VS + V TG L + Sbjct: 547 VGELTARAILETLKDPAFRDLV---RRLKEAGVSMESKEE-VSDLLSGLTFVLTGELSR- 601 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + + + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV ++ EE+F L++ Sbjct: 602 PREEVKALLQRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKE 660 >gi|291530728|emb|CBK96313.1| DNA ligase, NAD-dependent [Eubacterium siraeum 70/3] Length = 660 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 234/705 (33%), Positives = 366/705 (51%), Gaps = 51/705 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQ + E L ++ H+ YY P I D EYD L RR I P++ + P Sbjct: 4 EQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIVSE---SSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG + KVTH + SL+ +++ +L +F R+ KK + +EPKI Sbjct: 61 TQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERV-----KKAVGKAVYCVEPKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++ Y+ G F + RGDG GED++ ++ I +IP VL IP IEVRGEVY+ Sbjct: 116 DGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMVLREKIP-FIEVRGEVYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K DF L + + +P NPRNAA+G LR+ + +R L+ FV L + Sbjct: 175 KADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIEGRELTC 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L M+ LGF V +G + + VS E+ R + YDIDG V KVD+F L+ Sbjct: 235 HSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDDFELRN 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+ P+W ++ K+ ++ T+LLDI+I +GRTG LTPVA EPV + G ++ A L Sbjct: 295 ELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSRAVL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+DYI +DIR+GD + V++AG++IP+VV + + +++PF P Sbjct: 355 HNQDYID-----------SKDIRIGDIIAVRKAGDIIPEVVRSVSHAE--NSEPFVIPHI 401 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C + R + A RC + C AQ L+ ++HF SR A NI+GLG+ + Sbjct: 402 CPVCHGKAERAEDE------AVIRCV-NIDCPAQLLKNIEHFASRPAMNIDGLGEAVVKQ 454 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ I AD+++LQ++ +E + GF VS + L +I + S +R Sbjct: 455 LVENR----LISTVADLYSLQQQD------LEMLPGFAKVSASKLIANIENSKTNSPDRL 504 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGI+ +G + A+ L K + S + ++ + I+ V GDI+A I Sbjct: 505 LFALGIKGIGQKNAQLLMKNFGSIEKLSETSSEEISA----------VENFGDILANNIF 554 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 P +E LK + S ++ V TGTL + R +A+ + Q Sbjct: 555 TALHEPHMTELIER-LKSYGVNTVYQSDVKSDKLAGLTFVITGTLPDMTRDEAKTLIEQN 613 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G S +S+KT ++ G+ GSKL KAQQLGV +++++Q + ++ Sbjct: 614 GGKCSGSVSKKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMI 658 >gi|254427631|ref|ZP_05041338.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881] gi|196193800|gb|EDX88759.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881] Length = 776 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 222/605 (36%), Positives = 329/605 (54%), Gaps = 48/605 (7%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF-KVTHSI 93 YY P + D+EYD R + +PDL ++ P + G++ L F +V H + Sbjct: 24 YYVQDDPAVPDAEYDRAFRELKDLEAQYPDLITADSPTQRV----GDVPLDAFEQVQHEV 79 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL+ ++ +DLR F RI + D ++ + EPK+DG I++ Y G+ V AA Sbjct: 80 PMLSLDNAFDDDDLRAFDKRIRE--RLGVDETVDYVAEPKLDGLAISLLYLDGQLVRAAT 137 Query: 154 RGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG +GE+++ R I ++P L +P +EVRGEV + F ALN A +K Sbjct: 138 RGDGQTGENITVNARTIRSVPLTLRGSQVPSRLEVRGEVVMPHAGFAALNARQEAAEQKV 197 Query: 213 YANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY-EMLQKMRCLGFPVNN 270 +ANPRNAA+G LR+L+ +R L F+ + + + + + +ML+ +R G VN Sbjct: 198 FANPRNAAAGSLRQLDSRITASRPLEFYAYSMAQLEGVPEPATHADMLEALRSWGLRVNP 257 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 VR ++++Y + R L YDIDG+VYKVD F Q+ LG +R+PRW I+HKF Sbjct: 258 EVRVCAGVDALLAFYQGILEKRDHLDYDIDGVVYKVDRFDWQQDLGFVSRAPRWAIAHKF 317 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 ++ T L +D Q+GRTG LTPVARLEPV++GG +++NATLHN D I+ L Sbjct: 318 PAQEELTVLNGVDWQVGRTGALTPVARLEPVHVGGVIVSNATLHNIDEIQRL-------- 369 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 DIR+GD V+V RAG+VIPKVV + R DA+ + P CP+C S ++R G Sbjct: 370 ---DIRIGDTVVVYRAGDVIPKVVRALPERRPADARDIALPPSCPVCGSDILR------G 420 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 RCTGGL C AQQ E +KHF SR A +I+GLG + +D E I AD+ Sbjct: 421 DDQVVARCTGGLICGAQQREAIKHFASRRAMDIDGLGDKLVDALVDQE----LIATVADL 476 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + L+ Q ++ G+ S NL ++ + + L RF+F+LGI +G E A++L Sbjct: 477 YRLKAEQVAGLERM------GEKSADNLIAALETSKTVGLGRFLFALGILQIGEETAKNL 530 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 A + + + ++ VP VG +A+AI F+ N ++ LL Sbjct: 531 ADCFGDLEGIRRAPLLLLLA----------VPDVGMEVAKAIGAFFAEADNEVVIDGLLA 580 Query: 631 E-VSP 634 E V+P Sbjct: 581 EGVNP 585 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 51/79 (64%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 S +E + V TGTL+++ R +A++ + QLGA V+ +S+ T ++ G + GSKL KA+ Sbjct: 692 SRPLEGQTWVLTGTLEQLTRDQAKQALQQLGAKVAGSVSKNTSTVVAGASAGSKLAKAES 751 Query: 704 LGVKIMNEEQFLFLLQQYN 722 LGV++ +E L +L Q+ Sbjct: 752 LGVEVCDEAALLSMLTQHG 770 >gi|53713694|ref|YP_099686.1| DNA ligase [Bacteroides fragilis YCH46] gi|81382396|sp|Q64TM7|DNLJ_BACFR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52216559|dbj|BAD49152.1| DNA ligase [Bacteroides fragilis YCH46] Length = 665 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 235/707 (33%), Positives = 373/707 (52%), Gaps = 52/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L ++ H+ YY + P I D E+D L R + P+ +D N P + Sbjct: 4 KEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK + A RGDG G+DV+ ++ I +IP VL N PE+ E+RGE+ + Sbjct: 117 SISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F ALN E A +ANPRNAASG L+ N + +R L+ +++ L + G Y Sbjct: 177 VFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF ++ +R+ T + + N R L DG+V KV+ Q+ L Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R G+ AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I AD++ L +T I + GD S N+ I + + + ER IF Sbjct: 459 R----LGLIHDTADLYRL------TTDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVIF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + +I N D +LI + +G+ IA++I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSF----------KDIEELENADLETLINIDEIGEKIARSILNY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + N N V+ LK + R E+++S ++ + +V +G R + ++ + + Sbjct: 559 FANESNRKLVDR-LKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEK 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ GDN G +KLEKA +LG+KIMNEE+FL L+ Sbjct: 618 HGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664 >gi|331015921|gb|EGH95977.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 787 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 223/633 (35%), Positives = 343/633 (54%), Gaps = 50/633 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ A + L E+ H+ Y+ +P I D+EYD L A+ P L P+ Sbjct: 1 MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H + LSL + DLR+F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP ++ PE++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ + IT R L F +GLG Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLG 236 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 +TS A +L+ ++ G PV+ ++ A+ ++YY ++ R +L Y+IDG+V+ Sbjct: 237 QTSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVF 296 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + Sbjct: 297 KVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVA 356 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++V R Sbjct: 357 GVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPET 405 Query: 425 AQPFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSR 478 A+P P CP+C S V R + GK A +RC G LAC AQ + + H+VSR Sbjct: 406 AKPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSR 465 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +IEGLG + ++ + I PAD++ L+ Q I ++ GF ++S L Sbjct: 466 RAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKL 515 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I R +L RFI++LGI VG E A+ LA+ S Q + ++ + Sbjct: 516 LKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY-------- 567 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +P VG +A I F+++ N ++ALL E Sbjct: 568 --LPDVGLEVAYEIHSFFEDEHNRNVIDALLGE 598 Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + A + DWL + + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRF----------GTLEAVISADWLDMRQT--LPE 663 Query: 607 IIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ N A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDNANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++EE L L Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEEALLKRL 779 Query: 719 QQYNTTL 725 + + Sbjct: 780 TELGVAI 786 >gi|28870811|ref|NP_793430.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|81730313|sp|Q87YY6|DNLJ_PSESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28854060|gb|AAO57125.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato str. DC3000] Length = 787 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 223/633 (35%), Positives = 343/633 (54%), Gaps = 50/633 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ A + L E+ H+ Y+ +P I D+EYD L A+ P L P+ Sbjct: 1 MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H + LSL + DLR+F R+ + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP ++ PE++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ + IT R L F +GLG Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLG 236 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 +TS A +L+ ++ G PV+ ++ A+ ++YY ++ R +L Y+IDG+V+ Sbjct: 237 QTSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVF 296 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + Sbjct: 297 KVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVA 356 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++V R Sbjct: 357 GVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPET 405 Query: 425 AQPFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSR 478 A+P P CP+C S V R + GK A +RC G LAC AQ + + H+VSR Sbjct: 406 AKPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSR 465 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +IEGLG + ++ + I PAD++ L+ Q I ++ GF ++S L Sbjct: 466 RAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKL 515 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I R +L RFI++LGI VG E A+ LA+ S Q + ++ + Sbjct: 516 LKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY-------- 567 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +P VG +A I F+++ N ++ALL E Sbjct: 568 --LPDVGLEVAYEIHSFFEDEHNRNVIDALLGE 598 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + A + DWL + + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRF----------GTLEAVISADWLDMRQT--LPE 663 Query: 607 IIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ N A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDNANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++EE L L Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEEALLKRL 779 Query: 719 QQYNTTL 725 + + Sbjct: 780 TELGVAV 786 >gi|330963250|gb|EGH63510.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 787 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 223/633 (35%), Positives = 344/633 (54%), Gaps = 50/633 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ A + L E+ H+ Y+ +P I D+EYD L A+ P L P+ Sbjct: 1 MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H + LSL + DLR+F R+ + + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP ++ PE++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ + IT R L F +GLG Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLG 236 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 +TS A +L+ ++ G PV+ ++ A+ ++YY ++ R +L Y+IDG+V+ Sbjct: 237 QTSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVF 296 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + Sbjct: 297 KVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVA 356 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++V R Sbjct: 357 GVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPET 405 Query: 425 AQPFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSR 478 A+P P CP+C S V R + GK A +RC G LAC AQ + + H+VSR Sbjct: 406 AKPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSR 465 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +IEGLG + ++ + I PAD++ L+ Q I ++ GF ++S L Sbjct: 466 RAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKL 515 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I R +L RFI++LGI VG E A+ LA+ S Q + ++ + Sbjct: 516 LKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY-------- 567 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +P VG +A I F+++ N ++ALL E Sbjct: 568 --LPDVGLEVAYEIHSFFEDEHNRNVIDALLGE 598 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + A DWL + + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRF----------GTLEAVIGADWLDMRQA--LPE 663 Query: 607 IIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ N A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDNANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779 Query: 719 QQYNTTL 725 + + Sbjct: 780 TELGVAV 786 >gi|226365931|ref|YP_002783714.1| NAD-dependent DNA ligase LigA [Rhodococcus opacus B4] gi|254781403|sp|C1B1S4|DNLJ_RHOOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226244421|dbj|BAH54769.1| NAD(+)-dependent DNA ligase [Rhodococcus opacus B4] Length = 697 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/708 (32%), Positives = 364/708 (51%), Gaps = 44/708 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ + L +++ H YY PII D E+DAL + + + +PDL P+ P Sbjct: 17 REHWNELAEDVRQHQFRYYVRDAPIISDGEFDALLGELNDLENQYPDL---RTPDSPTQL 73 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG H LSL+ ++ ++LR +I+R+ +++ + + E KIDG Sbjct: 74 VGGGFATDFASADHLERMLSLDNVFATDELRTWISRV----EQETGPDLHYLCEVKIDGV 129 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 + + YE G+ V AA RGDG +GE+V+ R I IP L+ IP ++EVRGEV+ Sbjct: 130 ALNLVYENGRLVRAATRGDGRTGEEVTLNARTIDDIPEKLTGTDKYPIPALLEVRGEVFF 189 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HGLG++ Sbjct: 190 RLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGLGRSEGFEPA 249 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 QY+ + G PV+ + +V R + ++IDGLV KVDE SLQ Sbjct: 250 SQYDAYTALAAWGLPVSTHTVRVTGADAVVDRVQYWGEHRHDVEHEIDGLVVKVDETSLQ 309 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +R+PRW I++K+ ++A+T+LLDI + +GRTG +TP A +EPV + G+ ++ AT Sbjct: 310 RRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTVAGSTVSLAT 369 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN +K R G + +GD V++++AG+VIP+V+ +V+ R D F P+ Sbjct: 370 LHNGSEVK---------RKG--VLIGDTVVLRKAGDVIPEVLGPVVDARTGDEYEFVMPA 418 Query: 433 FCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + L P K G A RC C AQ ER+ H R AF+IE LG + Sbjct: 419 NCPECDT----PLAPAKEGD--ADIRCPNQQYCPAQLRERVFHVAGRGAFDIEVLGYEAA 472 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +++ +I D+F+L TT G + L D+++ ++ L Sbjct: 473 TSLLEAK----AIGDEGDLFSLTEDDLLKTTLFRTKAGGLSANGRRLLDNLDSAKDKPLW 528 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + +L IRHVG AR+LA + S + L V VG IA A Sbjct: 529 RVLVALSIRHVGPTAARALAGEFGSLDRIRESSVE----------ELAAVDGVGGTIAAA 578 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + E++ + V+ ++++ +E +V TG+L+ R +A+E + Sbjct: 579 VAEWFGVDWHRQIVDKWSAAGVRMEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAIL 638 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G + +S+KT ++ G++PGSK +KA +LGV +++E+ F LL+ Sbjct: 639 VRGGKAAGSVSKKTAFVVAGESPGSKHDKAVELGVPVLDEDGFRRLLE 686 >gi|269792727|ref|YP_003317631.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100362|gb|ACZ19349.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM 6589] Length = 673 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 233/712 (32%), Positives = 369/712 (51%), Gaps = 60/712 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR + L + I +HD YYQ + P I D EYDAL R + +FPDL P+ P Sbjct: 6 ARSRMEELAELIRHHDRLYYQENSPEITDQEYDALFRELVDLERSFPDLRL---PDSPTL 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++ G + + ++ HS P LSL+ + E++ F+ R+Y S EPK+DG Sbjct: 63 RVSGSPSEAFKRLPHSEPMLSLDNAVSREEVSDFLRRLY----DALGGSAPVVCEPKLDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +++ Y G + RGDG GEDV++ + I +P+ ++ +EVRGEVY+S+ Sbjct: 119 LAVSLLYRGGVLIRGLTRGDGSVGEDVTSNVMTIRDLPK--RIDYMGELEVRGEVYMSRR 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255 DF ALN G P+ANPRNAA+G LR+L+P R L+ F++ + E+ K Q Sbjct: 177 DFAALNQRREEEGLPPFANPRNAAAGSLRQLDPRVTAQRNLSCFLYHVVNHREVGLKTQE 236 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E+L ++ FPV R ++ Y ++ R + P D DG+V K+D ++ L Sbjct: 237 ELLLWLKGRSFPVQEDFRLCRDPEEVLEYLDDWDRRRHSYPADTDGVVIKLDSLEGREVL 296 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G RSPRW ++ KF ++ TR+L I++ +GRTG++TP A LEPV + G + A+LHN Sbjct: 297 GSTNRSPRWAVAFKFPPEERPTRVLSIEVSVGRTGVVTPTAVLEPVRLSGTEVRRASLHN 356 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D + +D+RVGD V V++AGE+IP+V+ + + R PF P CP Sbjct: 357 FDEL-----------ARKDVRVGDTVWVRKAGEIIPEVIRVDLGLRPEGTAPFVPPEGCP 405 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C SR+VR G++ A RC +C AQ ER+ HF SRD ++ GLG++ Sbjct: 406 SCGSRLVR----LPGEV--AIRCINP-SCPAQMKERIIHFASRDGMDVRGLGEKVASQLV 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 ++ AD+F L S ++ G+ S +NL +++ R+ L + I+ Sbjct: 459 DR----GMVKDLADLFFLTMEDWLSLDRM------GERSASNLVRALDVARDRPLRKLIY 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGI VG A+ LA + + +A V VG ++A+++ +F Sbjct: 509 ALGIPGVGERTAQDLADRFGRLEALMDASEEELAS----------VEGVGPVVARSVRDF 558 Query: 616 YQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++N + V L E P+ G +E + VFTG L ++R +AQ+ V Sbjct: 559 FRNDSTVRLVRRLRDAGVRMEERPTAG-------GPLEGMRFVFTGELGSMRRKEAQDLV 611 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +LG VS +S+ ++ G+ GSKL +A+ LGV I +E++FL L++++ Sbjct: 612 IRLGGKVSDSVSKGVTALVAGEGGGSKLSRARALGVPIWSEDRFLELVREHT 663 >gi|159028322|emb|CAO87220.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 669 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 233/716 (32%), Positives = 377/716 (52%), Gaps = 53/716 (7%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP+E I+Q ++L + Q SY YY P I DS YD L R + I +P L Sbjct: 3 IPLE---IQQRCQQLKTELQRASY---AYYVLDDPFISDSVYDQLYRELEDIEKRYPQLI 56 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P ++G +++ V H+IP SLE +N+E+L K+ +R R+ + D Sbjct: 57 ---TPDSPTQRVGDKISSQFVSVRHNIPLYSLENAFNLEELNKWGSRWQRYVNETQDTE- 112 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185 + E KIDG+ + + YE G V RGDG +GED++ +R I +IP L++ N P I+ Sbjct: 113 -YVCELKIDGSALALTYENGFLVRGVTRGDGVTGEDITPNVRTIRSIPLRLNIDNPPAIV 171 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG 244 EVRGE ++ + F +N E G +ANPRNAA+G LR+L+P + R L FF + L Sbjct: 172 EVRGEAFLPLDTFDKINQEREEKGESLFANPRNAAAGTLRQLDPKIVDKRRLQFFAYTL- 230 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + Q++ L ++ +GF VN + + + YY + + R L Y DG+V Sbjct: 231 HLDDNHITTQWQSLDRLETMGFLVNPHRQLCPSLQEVAQYYQDWQEKRHQLAYMTDGVVV 290 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+++ Q +LG + PRW I+ K+ ++ T + DI + +GRTG +TP+A +EPV + Sbjct: 291 KINDLQRQNRLGFTQKFPRWAIALKYPAEEVPTVVKDIIVNVGRTGAVTPMAVMEPVQVA 350 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + ATLHN D + L DIRVGD V++++AGE+IP+VV I+ R Sbjct: 351 GTTVQRATLHNSDRVAEL-----------DIRVGDTVIIRKAGEIIPEVVRILPELRPSQ 399 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 PF P+ CP CQS +VR + A RC +C A + H+ SRDA +I Sbjct: 400 TLPFQMPTNCPECQSPLVRPVGE------AVTRCVNS-SCPAILRGSVVHWASRDALDIR 452 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ + + + +D+++L++ T+I + G+ S NL ++ + Sbjct: 453 GLGEKVVILLIEQG----LVTAISDLYSLEK------TEIAKLDRMGEKSALNLITAMAQ 502 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +N S R ++ LGIR+VG+ A+ LA+ + + + A N L V + Sbjct: 503 SKNQSWSRVLYGLGIRYVGSVNAKILAESFRTVEELA----------NASVTDLASVYGI 552 Query: 605 GDIIAQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 G+ IAQ++ ++++ N V L + + + + K V TGTL ++R Sbjct: 553 GEEIAQSVYDWFRIAANRDLVAKLQAAGLQFAAAAKTTTTKATLAGKTFVITGTLPTLKR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+E + + G V+ +S+KTD +++G+ GSKLEKA +LG+ + E Q L L++ Sbjct: 613 EEAKELIEKAGGKVTGSVSKKTDYLVLGEAAGSKLEKALELGITQLTEAQLLELIK 668 >gi|253565642|ref|ZP_04843097.1| DNA ligase [Bacteroides sp. 3_2_5] gi|251945921|gb|EES86328.1| DNA ligase [Bacteroides sp. 3_2_5] Length = 665 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 235/707 (33%), Positives = 372/707 (52%), Gaps = 52/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L ++ H+ YY + P I D E+D L R + P+ +D N P + Sbjct: 4 KEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK + A RGDG G+DV+ ++ I +IP VL N PE+ E+RGE+ + Sbjct: 117 SISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F ALN E A +ANPRNAASG L+ N + +R L+ +++ L + G Y Sbjct: 177 VFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF ++ +R+ T + + N R L DG+V KV+ Q+ L Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R G+ AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I AD++ L +T I + GD S N+ I + + + ER IF Sbjct: 459 R----LGLIHDTADLYRL------TTDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVIF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + +I N D +LI + +G+ IA++I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSF----------KDIEELENADLETLINIDEIGEKIARSILNY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + N N V LK + R E+++S ++ + +V +G R + ++ + + Sbjct: 559 FANESNRKLV-GRLKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEK 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ GDN G +KLEKA +LG+KIMNEE+FL L+ Sbjct: 618 HGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664 >gi|330879146|gb|EGH13295.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 787 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 223/633 (35%), Positives = 344/633 (54%), Gaps = 50/633 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ A + L E+ H+ Y+ +P I D+EYD L A+ P L P+ Sbjct: 1 MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK------DDNSIF 127 P ++G + +V H + LSL + DLR+F R+ + + + Sbjct: 58 PTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGSKVQ 117 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186 ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP ++ PE++E Sbjct: 118 YSCEPKLDGLAVSLLYRDGALVRGATRGDGATGEDISVNVRTVRNIPLKLQGKGWPELLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244 VRGEV++SK F LN + VG K +ANPRNAA+G LR+L+ + IT R L F +GLG Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLG 236 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 +TS A +L+ ++ G PV+ ++ A+ ++YY ++ R +L Y+IDG+V+ Sbjct: 237 QTSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVF 296 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + Sbjct: 297 KVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVA 356 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++V R Sbjct: 357 GVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPET 405 Query: 425 AQPFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSR 478 A+P P CP+C S V R + GK A +RC G LAC AQ + + H+VSR Sbjct: 406 AKPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSR 465 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +IEGLG + ++ + I PAD++ L+ Q I ++ GF ++S L Sbjct: 466 RAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKL 515 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I R +L RFI++LGI VG E A+ LA+ S Q + ++ + Sbjct: 516 LKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY-------- 567 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +P VG +A I F+++ N ++ALL E Sbjct: 568 --LPDVGLEVAYEIHSFFEDEHNRNVIDALLGE 598 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + ++ +I DWL + + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LDAVIGA---DWLDMRQA--LPE 663 Query: 607 IIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ N A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDNANAERARAIEAQLKD----FGMHWRSEKKAVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779 Query: 719 QQYNTTL 725 + + Sbjct: 780 TELGVAV 786 >gi|116493340|ref|YP_805075.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745] gi|122265196|sp|Q03DT9|DNLJ_PEDPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116103490|gb|ABJ68633.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745] Length = 675 Score = 369 bits (947), Expect = e-99, Method: Compositional matrix adjust. Identities = 232/719 (32%), Positives = 394/719 (54%), Gaps = 57/719 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E + +E+A K +L + + YY P + D EYD A+ AFP++ Sbjct: 7 LEEMQVEEASKLAQNLREILDRWSKLYYTKDAPEVEDYEYDEKYADLVALEEAFPEIITQ 66 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + ++GGE+ KVTH+ P LS+ +++ ++L +F RI QK + + + Sbjct: 67 DSIT---QRVGGEILEGFTKVTHTEPMLSMGDVFSRDELVEFDNRI----QKNVGHPVDY 119 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG I++ Y+ G+ + + RGDG+ GED++ ++ I ++P+ L+ P IEVR Sbjct: 120 NVELKIDGLAISLIYQDGELIQGSTRGDGNIGEDITKNLKTIKSVPQKLTR--PLSIEVR 177 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246 GE ++ K F LN + + G+ +ANPRNAA+G LR+LN T++T R L+ F++ + + Sbjct: 178 GECFMPKASFAKLNAQQLEDGKPVFANPRNAAAGSLRQLN-TNVTKKRDLDTFIYTVVDS 236 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 +++ AK Q++ +Q M LGF N + Y + + R LPY IDG+V KV Sbjct: 237 NQLGAKTQHQAIQMMAELGFNTNPTQEVCANLDEVWDYIAKYEGQREDLPYGIDGIVLKV 296 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ SLQ++LG + PRW I++KF ++A+T + DI+ +GRTG++TP A ++PV + G Sbjct: 297 NDLSLQQELGHTVKIPRWEIAYKFPPEEAATVVRDIEWTVGRTGVVTPTAVMDPVQLAGT 356 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATL+N D + +D+ +GD VL+ +AG++IP++ +++ +R Sbjct: 357 TVSRATLNNVDQLT-----------AKDVHIGDTVLLHKAGDIIPEITRVVLEKRPVGIS 405 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP C +V LN + A RC C AQ + RL+HF SR+A NI GL Sbjct: 406 ELDIPTHCPSCGKELVH-LNGE-----VALRCINP-DCPAQIVARLEHFGSRNAMNIMGL 458 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+ + I D++ L ++ ++ + GF + V NL ++I+ R Sbjct: 459 GPKQIQQLYAKN----FIHHFDDLYKL------TSEELSQLDGFKEKRVNNLLEAIDNSR 508 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVG 605 SLER I LGI+ VG ++AR+LA+ + + N Q I A V +G Sbjct: 509 KNSLERLINGLGIQGVGTKMARTLAEKFGTMDNLMQTTIEEFDA-----------VDTIG 557 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLVFTGTLQKI 661 + +A + F+Q+ ++ LK V ++ + ++ + KK+V TG L++ Sbjct: 558 ETLANNLATFFQSDVAQNMIDE-LKAVGVNMEYLGVKPAESPDGYYKGKKVVLTGKLEQY 616 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R++ +E + LGA V+ +S+KTDI+I G + GSKL KAQ LG++I++E + + +Q Sbjct: 617 TRNELKERLISLGADVAGSVSKKTDILIAGADAGSKLTKAQALGIEILDETEAIAKFEQ 675 >gi|111023430|ref|YP_706402.1| NAD-dependent DNA ligase LigA [Rhodococcus jostii RHA1] gi|123045472|sp|Q0S2J2|DNLJ_RHOSR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110822960|gb|ABG98244.1| DNA ligase (NAD+) [Rhodococcus jostii RHA1] Length = 696 Score = 369 bits (947), Expect = e-99, Method: Compositional matrix adjust. Identities = 229/708 (32%), Positives = 364/708 (51%), Gaps = 44/708 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ + L +E+ H YY PII D E+D L + + + +PDL P+ P Sbjct: 16 REHWNELAEEVRQHQFRYYVRDAPIISDGEFDVLLGELNDLENQYPDL---RTPDSPTQL 72 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + H LSL+ ++ ++LR +I+R+ +++ + + E KIDG Sbjct: 73 VGGGFSTDFASADHLERMLSLDNVFATDELRTWISRV----EQETGPDLHYLCEVKIDGV 128 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 + + YE G+ AA RGDG +GE+V+ R I IP L+ IP ++EVRGEV+ Sbjct: 129 ALNLVYENGRLDRAATRGDGRTGEEVTLNARTIDDIPEKLTGTDEYPIPALLEVRGEVFF 188 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HGLG++ Sbjct: 189 RLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGLGRSEGFEPV 248 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 QY+ + G PV+ + +V R + ++IDGLV KVDE SLQ Sbjct: 249 SQYDAYTALAAWGLPVSTHTARVTGADAVVDRVQYWGEHRHDVEHEIDGLVVKVDETSLQ 308 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +R+PRW I++K+ ++A+T+LLDI + +GRTG +TP A +EPV + G+ ++ AT Sbjct: 309 RRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTVAGSTVSLAT 368 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN +K R G + +GD V++++AG+VIP+V+ +V+ R D F P+ Sbjct: 369 LHNGSEVK---------RKG--VLIGDTVVLRKAGDVIPEVLGPVVDARTGDEYEFVMPT 417 Query: 433 FCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + L P K G A RC C AQ ER+ H R AF+IE LG + Sbjct: 418 HCPECDT----PLAPAKEGD--ADIRCPNQQYCPAQLRERVFHVAGRGAFDIEVLGYEAA 471 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +++ +I D+F+L T+ G + L D+++ ++ L Sbjct: 472 TSLLEAK----AIGDEGDLFSLTEDDLLKTSLFRTKAGGLSANGRRLLDNLDSAKDKPLW 527 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + +L IRHVG AR+LA + S + L V VG IA A Sbjct: 528 RVLVALSIRHVGPTAARALAGEFGSLARIRESSVE----------ELAAVDGVGGTIAAA 577 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + E++ + VE ++++ +E +V TG+L+ R +A+E + Sbjct: 578 VAEWFGVDWHQQIVEKWSAAGVRMEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAIL 637 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G + +S+KT ++VG++PGSK +KA +LGV +++E+ F LL+ Sbjct: 638 IRGGKAAGSVSKKTAFVVVGESPGSKHDKAVELGVPVLDEDGFRRLLE 685 >gi|282899989|ref|ZP_06307949.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505] gi|281195087|gb|EFA70024.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505] Length = 690 Score = 369 bits (947), Expect = e-99, Method: Compositional matrix adjust. Identities = 239/715 (33%), Positives = 379/715 (53%), Gaps = 56/715 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q +EL L Q+ SY YY PI+ D+ YD L R + +P+L ++ P Sbjct: 12 QRVEELRKLLQQASY---AYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVTTDSPT--- 65 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKI 134 ++G V H+IP SLE +N+E+L+ + R R + + E KI Sbjct: 66 QRVGERPATHFSSVRHNIPLYSLENAFNVEELQSWNQRWIRHLPTPHSLTEVEYVAELKI 125 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE---VRGEV 191 DG + + Y+ G V A RGDG +GED++ +R I +IP L+ + E+IE VRGEV Sbjct: 126 DGAALALTYQNGVLVRGATRGDGITGEDITPNVRTIRSIPLRLNFDGIELIEKVEVRGEV 185 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTS 247 ++ F +N + G + +ANPRNA +G LR+L+P + R L+FF + L G Sbjct: 186 FLPLEVFKQINQKRQKAGEQLFANPRNAVAGTLRQLDPRVVAQRQLDFFAYTLHIPGLDD 245 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 A Q+E LQ ++ LGF V+ + ++ + YY + R PY DG+V K++ Sbjct: 246 RSIANTQWESLQLLQKLGFRVDVNHKLCSSVDEVAQYYQYWNTERLNSPYMTDGVVVKLN 305 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 F LQ+QLG + PRW I+ K+A ++A TR+ +I + +GRTG LTP+A + PV + G Sbjct: 306 AFKLQEQLGFTQKFPRWAIALKYAAEEAPTRVENIMVNVGRTGALTPLAEMRPVQLAGTT 365 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN D ++ L DIR+GD V+V++AGE+IP+VV +I R D +P Sbjct: 366 VSRATLHNSDRLREL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPNDTEP 414 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P+ CP+C VVR+L G++V RC +C A ++H+VSRDA +I+G+G Sbjct: 415 FIMPTNCPVCGQPVVREL----GEVVT--RCVNA-SCPAILKGEIEHWVSRDALDIKGIG 467 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + D + AD++ L Q ++ G S L I + +N Sbjct: 468 EK---LVHQLVDKGL-VHSVADLYNLTEEQLCGLERM------GKRSAEKLVQVIRESKN 517 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R ++ LGIRHVG+ A+ L++ + + A A +D + V +G Sbjct: 518 QPWSRVLYGLGIRHVGSVNAQLLSEKFTTVDKLAS------AKQSD----IEGVYGIGVE 567 Query: 608 IAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQKIQR 663 IAQ++ +++ N I +E + +++ H + + +I K V TGTL ++R Sbjct: 568 IAQSVYQWFHISANQNLIIRLETIGIQLATGKSVHARTEPNPQIAGKTFVITGTLPTLKR 627 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ + + G V+ +S+KTD I+VG + GSKLEKAQ LG+K ++E L +L Sbjct: 628 DEAKAMIQKAGGKVTDTVSKKTDFIVVGADAGSKLEKAQSLGIKQLDEANLLEML 682 >gi|225018630|ref|ZP_03707822.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum DSM 5476] gi|224948624|gb|EEG29833.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum DSM 5476] Length = 659 Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 240/713 (33%), Positives = 383/713 (53%), Gaps = 69/713 (9%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A+ ++ L +++ YH YY P I D +YDA+ R + + FP+L RS+ N P Sbjct: 6 AQLRVAELTKQLHYHSHRYYVLDDPEISDFDYDAMLRELETLEAEFPEL-RSD--NSPTV 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG+ + S KV H++ SL+ ++ ++ F R+ ++K D+ ++ +EPKIDG Sbjct: 63 RVGGQASNSFEKVAHAVQMGSLQDAFSDGEMLDFFRRV----EEKIDHPVY-VVEPKIDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 +++ Y G+F + RGDG GEDV+ +R I +IP L+ +P +EVRGEV++ ++ Sbjct: 118 LSVSLEYRDGEFFRGSTRGDGFIGEDVTQNLRTIRSIPLKLTRPLP-YLEVRGEVFMPRD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 FL + + P+ NPRNAA+G LR+ +P + R L+ +V + + Sbjct: 177 SFLKVVERQEIEEETPFKNPRNAAAGSLRQKDPKVVAERGLDIYVFNVQQIEGEELTSHK 236 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI---RSTLPYDIDGLVYKVDEFSLQ 312 + L +R LGF V + + NTF +E+ SI R P+DIDG V KVD+FS + Sbjct: 237 QSLDLLRGLGFKV---IPRYNTFEDPQQVLDEIASIGDRRGEYPFDIDGAVVKVDDFSER 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG A+ P+W ++ K+ ++ T L ID+ +GRTG LTPVA +P+ + G ++ A Sbjct: 294 EILGAGAKYPKWAMAFKYPPEEKETVLKQIDVNVGRTGALTPVALFDPIILAGTTVSRAV 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFP 431 LHN+D+I +DIR+GD ++V++AG++IP+VV + +H + ++PF P Sbjct: 354 LHNQDFIT-----------EKDIRIGDTIVVRKAGDIIPEVVSVA---KHAEQSEPFLLP 399 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S VVR + AA RC C A +L + HF SR A NI+GLG + Sbjct: 400 EHCPVCGSEVVRVEDE------AAVRCENP-ECPATRLRNIIHFASRGAMNIDGLGTANI 452 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + I+ AD++ L+R K+E F D SV NL SI K + L Sbjct: 453 TALIDNG----LIKSSADLYYLKRE---DLLKLER---FADKSVDNLLSSIEKSKGNELW 502 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDWLSLIRVPLVGDI 607 R +F LGIR VG +A+ L + Y + A+EI+ I VG + Sbjct: 503 RLLFGLGIRGVGQSVAKLLCEKYGNIDELMTAPAEEIDEIYG--------------VGGV 548 Query: 608 IAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IA IV+++ P + +E V+P+ +K ++ V TGTL ++R +A Sbjct: 549 IAHNIVQYFALPHSRQLIERFQAAGVNPTAVPVQKG--DKLAGLTFVITGTLPTMKREEA 606 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + Q G + +S+KT ++ G+ GSKL KAQ LGV +++EEQFL ++Q Sbjct: 607 KALIEQNGGKATGSVSKKTSYLLAGEEAGSKLTKAQSLGVPVLDEEQFLKMIQ 659 >gi|254445017|ref|ZP_05058493.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235] gi|198259325|gb|EDY83633.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235] Length = 668 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 224/700 (32%), Positives = 359/700 (51%), Gaps = 47/700 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L EI HD+ YY+ ++P I D +YD LKR + A P+L P + Sbjct: 8 KRIEQLRAEIRRHDELYYRNAEPEISDFDYDGLKRELADLEAANPELPMEASPT---QAV 64 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + H +P SL+ ++ ++ F+ R+ + + ++ + FT+EPKIDG Sbjct: 65 GDDRVEGFESYRHRLPMQSLDNTYSKDEFVAFVARVEKGLEIENAH---FTVEPKIDGVA 121 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYISKND 197 +++ YE+G+ V A RG+G G+DV+A R I ++P L + P++IE+RGE+++ + Sbjct: 122 VSLTYEQGELVRAVTRGNGIEGDDVTANARFIESLPGSLQGDFHPDLIEIRGEIFMHVEE 181 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F LN E G + + NPRN A+G ++ L+ ++ R L+ ++GLG Q E Sbjct: 182 FERLNAERREAGLEQFKNPRNLAAGTIKMLDREEVAKRKLDIVLYGLGDCRPAVVSSQIE 241 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +++ G PV + G S E+ +R + DG V K+D FS Q LG Sbjct: 242 YRKQLVLWGLPVVERFWEVEGAEGAWSAVEELDEVRGGFAFPTDGAVVKLDSFSQQDALG 301 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW I+ KFA +QA T L I IQ+GRTG LTPVA L+PV + G ++ ATLHN+ Sbjct: 302 ATSKAPRWAIAVKFAAEQAETVLERITIQVGRTGTLTPVAELQPVQLAGTTVSRATLHNQ 361 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 + + +D+RVGD V+V++AGE+IP VV +++ +R ++ F FP CP Sbjct: 362 EEM-----------ARKDVRVGDTVVVEKAGEIIPAVVRVVLEKRPEESASFVFPERCPA 410 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + V + G++ A RC C Q RL+HF SR +IEGLG+ +D Sbjct: 411 CGTEVSK----IEGEV--AVRCLNS-ECPDQVRGRLEHFASRQCLDIEGLGEAVVDQLVA 463 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + + +DI+ L+ + K F + S NL +I + + L R + Sbjct: 464 RK----IVSNISDIYGLEYEDMLALDK------FAEKSARNLLAAIEASKGVELWRLLHG 513 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI VGA A+ LAK + ++ L+ + +G+ A IV ++ Sbjct: 514 LGIPQVGASAAKDLAKALGGVRELSEASVE----------RLVEIDGIGEKTASGIVAYF 563 Query: 617 QNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + RN V+AL ++P + K V TGTL ++R +A+ V G Sbjct: 564 GDERNKTVVDALFAAGMNPKAPERPSEADAIFAGKTFVITGTLPTMKRDEAKALVESKGG 623 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 V+ +S+KTD ++ G+ GSKL KA+ LGV +++E + L Sbjct: 624 KVAGSVSKKTDFLVAGEAAGSKLTKAESLGVTVVDEAELL 663 >gi|122971128|sp|Q14L37|DNLJ_SPICI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110005471|emb|CAK99793.1| dna ligase protein [Spiroplasma citri] Length = 667 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 245/715 (34%), Positives = 394/715 (55%), Gaps = 56/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ EQA+K L++++ + YY P + D EYD + AI + +L + P Sbjct: 1 MTFEQAKKRSLVLKEQLEKWNYEYYVNDNPSVSDQEYDRALQELIAIEQQYSELITIDSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++ G+++ K H+ P LSL +N +DL F +I F + I +T E Sbjct: 61 T---QRVSGQISEKFNKYVHTSPMLSLGNAFNYDDLIHFDEQIKEFTALPE---IEYTCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ Y+ V A RGDG +GEDV+ I+ I +IP L ++ P +I VRGEV Sbjct: 115 LKIDGLSISLVYDNHVLVMGATRGDGLTGEDVTINIKQIKSIP--LRIDQPTLI-VRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 Y+S +F +N+E + G +ANPRNAA+G LR+L+ T + R LN F++ + Sbjct: 172 YLSVEEFNKINEERVKNGEFKFANPRNAAAGTLRQLDSTIVAKRKLNAFLYYYVNALQDG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + QYE LQ++ L F +N R + + +Y E + R+ L Y+IDG+V KV+ + Sbjct: 232 IQSQYEALQRLEQLKFKINPEYRYCSNIAAVWAYIQEYEPKRNQLGYEIDGIVIKVNNLN 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L ++G A++P+W I++KF + T+LL+I +GRTG +T A LEP+ I G ++ Sbjct: 292 LYNRIGYTAKNPKWAIAYKFPAEVVVTKLLNIFPSVGRTGRITYNAVLEPIRIVGTIVRA 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D+I RDIR+GD V VK+AG++IP+V++ + R +AQ + Sbjct: 352 ATLHNADFIT-----------ERDIRIGDNVQVKKAGDIIPEVINYVAARRQKNAQKWQE 400 Query: 431 PSFCPICQS---RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + CP C S RV +++ V + T G L+H+ SR+A NIEG+ Sbjct: 401 ATHCPECNSLLERVEGEVDQYCINSVCPKKITRG----------LEHYCSRNAMNIEGIS 450 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ FK E ++ +D++ L++ + ++EN FG+ S N+ SIN +N Sbjct: 451 EKIIERLFKLE----YLKSFSDLYQLEQY-RAEIIELEN---FGEKSFENMITSINNSKN 502 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SLER +F+LGIRHVG + A+ LA+ + + N +A N + LS+I +G I Sbjct: 503 NSLERLLFALGIRHVGQKTAKLLARQFKTIDN--------LAAMNIEQLSIIND--IGPI 552 Query: 608 IAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A ++V+++ P N + ALL++ V ++++ + EN + V TG L K R Sbjct: 553 VAASVVDYFAIPANQQEL-ALLRQNGVKMEYFATNQHLAQKFENYRFVITGVLSK-SREY 610 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +E + G VS +S KT ++ G + G+KL KAQ+L VKI+NEE+F LL + Sbjct: 611 FKELIESYGGQVSESVSAKTTYLLAGTDAGNKLVKAQKLNVKIINEEEFQQLLSK 665 >gi|225631070|ref|ZP_03787806.1| DNA ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591237|gb|EEH12383.1| DNA ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 508 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 222/533 (41%), Positives = 328/533 (61%), Gaps = 42/533 (7%) Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +EVRGE+YIS +DFL LN+ +ANPRNAA+G L++L+ +R L +F + L Sbjct: 5 LEVRGEIYISNSDFLKLNE------NDEFANPRNAAAGSLKQLDANITASRPLRYFAYSL 58 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 +E K Q E+L K+ LGF VN ++ G++ +YNE+ + R L YDIDG+V Sbjct: 59 IGGAE---KSQSEVLNKLEALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIV 115 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKV++ LQ +LG ++PR +++KF+ A T+L I IQ+GRTG+LTPVA L PVN+ Sbjct: 116 YKVNDLVLQNRLGNTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNV 175 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG L++ A+LHN+D IK +DIR GD V +KRAG+VIP++V++ + R P Sbjct: 176 GGVLVSRASLHNQDEIK-----------RKDIREGDIVTIKRAGDVIPQIVEVSRDSRLP 224 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + F FP CP C S+ VR + + AA RC AC AQ +E+LKHFVS+DAF+I Sbjct: 225 NTPEFVFPEVCPECGSK-VRQVEGE-----AAVRCPEEFACKAQIIEKLKHFVSKDAFDI 278 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 GLG +Q++FF+ D +IP DIFTL+ R +E G+G S+ +L ++I Sbjct: 279 VGLGDKQIEFFY---DLGLIKQIP-DIFTLEER--LDEFNLEEQSGWGKKSIAHLLNAIQ 332 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 RR I+L+RFIFSLGIR +G A LA YY+SY N+ N++I ++D+ L+ + Sbjct: 333 SRRVITLDRFIFSLGIRFIGQVAAELLADYYVSYDNW---YNSMIELSSDN-TELVGIDG 388 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK--EVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G +A+++ F+ NI + L ++ P + +S + NK +VFTG L + Sbjct: 389 IGKKVAESLESFFSKEHNIKMLNDLTACLQILPV---SSNSSNSVLNNKIIVFTGKLLAM 445 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R +A+ LGA VS+ LS KTD +I G+ PGSK +KA +LGV+I++E+Q+ Sbjct: 446 SRGEAKVRAKTLGAKVSSHLSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQW 498 >gi|227548037|ref|ZP_03978086.1| DNA ligase (NAD(+)) [Corynebacterium lipophiloflavum DSM 44291] gi|227079891|gb|EEI17854.1| DNA ligase (NAD(+)) [Corynebacterium lipophiloflavum DSM 44291] Length = 689 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 242/708 (34%), Positives = 372/708 (52%), Gaps = 57/708 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ L ++ +H D YY + +I D+E+D L A A P+LA P P ++ Sbjct: 27 RQWDDLASQVRHHRDLYYN-GQQVISDAEFDKLFNNLVAFEEAHPELAV---PESPTKEV 82 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++ + VTH +SL+ +++ E+L ++ + + E KIDG Sbjct: 83 GAPVSSAFADVTHLERMMSLDNVFSAEELADWLAK----------TPGPYLTELKIDGLS 132 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I + YE G+ V AA RGDG GED++A + IP IP L+ + PE++EVRGEV+I DF Sbjct: 133 IDLVYENGELVRAATRGDGRVGEDITANAKVIPDIPHRLTGDFPELLEVRGEVFIRPEDF 192 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 LN++ I G KP+ANPRN A+G LR+ NP D+ R L HG+G Q+E Sbjct: 193 PELNEQRIKEGGKPFANPRNTAAGGLRQKNPEDVKKRRLRMICHGIGAREGFSPASQFEA 252 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 +K+ G PV+ R+A T + + + R +++DG+V KVD + Q+ LG Sbjct: 253 YEKLAEWGLPVSEYTRRAETANEVQESVDYWAEHRHDAIHEMDGVVIKVDSVATQRSLGA 312 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PRW I++K+ ++ +T+LLDI++ +GRTG TP A LEPV + G+ ++ ATLHN+ Sbjct: 313 TSRAPRWAIAYKYPPEEVTTKLLDIEVSVGRTGRATPFAVLEPVFVSGSTVSLATLHNQH 372 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 +K R G + +GD V++++AGE+IP+V+ + + R + F +P CP C Sbjct: 373 EVK---------RKG--VLIGDTVVIRKAGEIIPEVLGPVADLRDGSEREFIYPKDCPAC 421 Query: 438 QSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-KQQLDFFF 495 + +L P K G A RC +C AQ +RLK+ SR AF+IE LG K +D Sbjct: 422 GT----ELAPAKEGD--ADWRCPNTRSCPAQLSQRLKYLASRGAFDIEALGEKGAIDLI- 474 Query: 496 KSEDPAFSIRIPADIFTLQ----RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D + D+F L ++ TTK N+ G + NL + R L Sbjct: 475 ---DSGVLVD-EGDLFDLTEEDLKKSSAYTTKAGNVNAAGKKLLANL----DTARERELW 526 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + +L IRHVG AR+LA Y S Q I+ +A L VG +IAQ+ Sbjct: 527 RVLVALSIRHVGPTAARALAARYASMQAL---IDAPVA-------DLADTDGVGLVIAQS 576 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +++ + V+ K + +E +V TGTL+ R +A+E + Sbjct: 577 FKDWFTVDWHRDIVDKWAKAGVRMVDDTTDAAPQTLEGLTVVVTGTLENFSRDEAKEAIL 636 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G + +S+KT ++VG+N GSK +KA++LGV I+NEEQF LLQ Sbjct: 637 SRGGKAAGSVSKKTSYVVVGENAGSKEDKARELGVPILNEEQFEQLLQ 684 >gi|330889906|gb|EGH22567.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. mori str. 301020] Length = 787 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 221/623 (35%), Positives = 338/623 (54%), Gaps = 50/623 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137 + +V H +P LSL + D+ +F R+ + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ P+++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + +G K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L+ ++ G PV+ ++ AN + YY ++ R TL Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G ++ NATLH Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLH 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + L + +GD V+++RAG+VIP+VV ++V R A+P P C Sbjct: 367 NMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVVERRPESARPVQVPQTC 415 Query: 435 PICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+C S V R + GK A +RC G LAC AQ + + H+VSR A +IEGLG Sbjct: 416 PVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGD 475 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + I PAD++ L+ Q I ++ GF ++S L+ +I R Sbjct: 476 KTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLFKAIADSRQP 525 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGI VG E A+ LA+ S Q + ++ + +P VG + Sbjct: 526 TLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY----------LPDVGLEV 575 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 576 AYEIHSFFEDEHNRNVIDALLGE 598 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + + II+ DWL + + + + Sbjct: 616 STTLEGLIDKLHIPSVGPGAAQKLADRFGT-------LEAIISA---DWLDMRQT--LPE 663 Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ + + A+EA LK+ G H ++ +E L V TG+L Sbjct: 664 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 719 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L Sbjct: 720 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 779 Query: 719 QQYNTTL 725 + T+ Sbjct: 780 TELGVTV 786 >gi|255013963|ref|ZP_05286089.1| DNA ligase [Bacteroides sp. 2_1_7] gi|301310547|ref|ZP_07216486.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3] gi|300832121|gb|EFK62752.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3] Length = 664 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 238/708 (33%), Positives = 372/708 (52%), Gaps = 56/708 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ +L E+ H+ YY S P I D E+D + + + A P+ A DP+ P ++G Sbjct: 5 KIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTRRVG 61 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 +++ +V H P LSL ++ +++R F R R + E K DGT I Sbjct: 62 SDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDGTSI 117 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198 ++ YEKG+ A RGDG G+DV+A I+ I ++P R+ + PE E+RGEV + +F Sbjct: 118 SLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPWAEF 177 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEIFAKGQYE 256 LN E +ANPRNAASG L++ NP + +R L+ +F + LG+ + A+G YE Sbjct: 178 DRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGEN--LPAEGHYE 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ R GF + + +R+ + I Y R LP DG+V KV+ Q+ LG Sbjct: 236 NLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNLG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW I++KF ++A TRL + Q+GRTG +TPVA LEPV + G ++ A+LHN Sbjct: 296 FTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435 D I+GL D+ +GD+V V++ GE+IPK+V + V R F CP Sbjct: 356 DIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +VR AAH C C Q R++HFV+R A NI +G + ++ + Sbjct: 405 ECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNI-NIGPETVEDLY 457 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 A ++ AD++TL + + + + + S NL S+ + + + ER +F Sbjct: 458 N----AGYVKDSADLYTL------TVADLLRLERWAEKSARNLMSSLEESKQVPFERVLF 507 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR VG +A+ L + S + Q A D L+ V +G+ IAQ+++ + Sbjct: 508 GLGIRFVGETVAKRLVSAFHSIEALEQ------ASLED----LVAVDEIGERIAQSVLSY 557 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQEYVTQ 672 + + +N V LKE + E+ +++ E K +V +GT K R + + + Q Sbjct: 558 FSDEKNRTLVNR-LKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G S +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+ Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664 >gi|150007448|ref|YP_001302191.1| DNA ligase [Parabacteroides distasonis ATCC 8503] gi|298375424|ref|ZP_06985381.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19] gi|166216223|sp|A6LA55|DNLJ_PARD8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149935872|gb|ABR42569.1| DNA ligase [Parabacteroides distasonis ATCC 8503] gi|298267924|gb|EFI09580.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19] Length = 664 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 238/708 (33%), Positives = 372/708 (52%), Gaps = 56/708 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ +L E+ H+ YY S P I D E+D + + + A P+ A DP+ P ++G Sbjct: 5 KIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTRRVG 61 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 +++ +V H P LSL ++ +++R F R R + E K DGT I Sbjct: 62 SDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDGTSI 117 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198 ++ YEKG+ A RGDG G+DV+A I+ I ++P R+ + PE E+RGEV + +F Sbjct: 118 SLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPWAEF 177 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEIFAKGQYE 256 LN E +ANPRNAASG L++ NP + +R L+ +F + LG+ + A+G YE Sbjct: 178 DRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGEN--LPAEGHYE 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ R GF + + +R+ + I Y R LP DG+V KV+ Q+ LG Sbjct: 236 NLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNLG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW I++KF ++A TRL + Q+GRTG +TPVA LEPV + G ++ A+LHN Sbjct: 296 FTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435 D I+GL D+ +GD+V V++ GE+IPK+V + V R F CP Sbjct: 356 DIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +VR AAH C C Q R++HFV+R A NI +G + ++ + Sbjct: 405 ECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNI-NIGPETVEDLY 457 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 A ++ AD++TL + + + + + S NL S+ + + + ER +F Sbjct: 458 N----AGYVKDSADLYTL------TVADLLRLERWAEKSAQNLMSSLEESKQVPFERVLF 507 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR VG +A+ L + S + Q A D L+ V +G+ IAQ+++ + Sbjct: 508 GLGIRFVGETVAKRLVSAFHSIEALEQ------ASLED----LVAVDEIGERIAQSVLSY 557 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQEYVTQ 672 + + +N V LKE + E+ +++ E K +V +GT K R + + + Q Sbjct: 558 FSDEKNRTLVNR-LKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G S +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+ Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664 >gi|262382012|ref|ZP_06075150.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B] gi|262297189|gb|EEY85119.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B] Length = 664 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 239/708 (33%), Positives = 373/708 (52%), Gaps = 56/708 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ +L E+ H+ YY S P I D E+D + + + A P+ A DP+ P ++G Sbjct: 5 KIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTRRVG 61 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 +++ +V H P LSL ++ +++R F R R + E K DGT I Sbjct: 62 SDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDGTSI 117 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198 ++ YEKG+ A RGDG G+DV+A I+ I ++P R+ + PE E+RGEV + +F Sbjct: 118 SLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPWAEF 177 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEIFAKGQYE 256 LN E +ANPRNAASG L++ NP + +R L+ +F + LG+ + A+G YE Sbjct: 178 DRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGEN--LPAEGHYE 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ R GF + + +R+ + I Y R LP DG+V KV+ Q+ LG Sbjct: 236 NLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNLG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW I++KF ++A TRL + Q+GRTG +TPVA LEPV + G ++ A+LHN Sbjct: 296 FTSKSPRWAIAYKFQAERAETRLNLVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435 D I+GL D+ +GD+V V++ GE+IPK+V + V R F CP Sbjct: 356 DIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +VR AAH C C Q R++HFV+R A NI +G + ++ + Sbjct: 405 ECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNI-NIGPETVEDLY 457 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 A ++ AD++TL + + + + + S NL S+ + + + ER +F Sbjct: 458 N----AGYVKDSADLYTL------TVADLLRLERWAEKSAQNLMSSLEESKQVPFERVLF 507 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR VG +A+ LA + S + Q A D L+ V +G+ IAQ+++ + Sbjct: 508 GLGIRFVGETVAKRLASAFHSIEALEQ------ASLED----LVAVDEIGERIAQSVLSY 557 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + + +N V LKE + E+ N S +++ +V +GT K R + + + Q Sbjct: 558 FSDEKNRTLVNR-LKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G S +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+ Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDAFLNMLE 664 >gi|256839697|ref|ZP_05545206.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13] gi|256738627|gb|EEU51952.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13] Length = 664 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 238/708 (33%), Positives = 372/708 (52%), Gaps = 56/708 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ +L E+ H+ YY S P I D E+D + + + A P+ A DP+ P ++G Sbjct: 5 KIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFA---DPDSPTRRVG 61 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 +++ +V H P LSL ++ +++R F R R + E K DGT I Sbjct: 62 SDLSKEFEQVVHKYPMLSLGNTYSEDEIRDFYDRTVRSL----NEPFEIVAELKYDGTSI 117 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198 ++ YEKG+ A RGDG G+DV+A I+ I ++P R+ + PE E+RGEV + +F Sbjct: 118 SLTYEKGRLTRAVTRGDGTRGDDVTANIKTIRSVPLRLRGSDFPEEFEIRGEVLLPWAEF 177 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEIFAKGQYE 256 LN E +ANPRNAASG L++ NP + +R L+ +F + LG+ + A+G YE Sbjct: 178 DRLNKEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGEN--LPAEGHYE 235 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 LQ R GF + + +R+ + I Y R LP DG+V KV+ Q+ LG Sbjct: 236 NLQAARAWGFKIPDVIRKCQSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQRNLG 295 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW I++KF ++A TRL + Q+GRTG +TPVA LEPV + G ++ A+LHN Sbjct: 296 FTSKSPRWAIAYKFQAERAETRLNSVSFQVGRTGTVTPVANLEPVLLAGTVVKRASLHNA 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435 D I+GL D+ +GD+V V++ GE+IPK+V + V R F CP Sbjct: 356 DIIEGL-----------DLHIGDQVYVEKGGEIIPKIVGVNVEARSMLMGDKVRFIRVCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +VR AAH C C Q R++HFV+R A NI +G + ++ + Sbjct: 405 ECGTPLVRPEGE------AAHYCPNESGCPPQIKGRIEHFVTRKAMNI-NIGPETVEDLY 457 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 A ++ AD++TL + + + + + S NL S+ + + + ER +F Sbjct: 458 N----AGYVKDSADLYTL------TVADLLRLERWAEKSAQNLMSSLEESKQVPFERVLF 507 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR VG +A+ L + S + Q A D L+ V +G+ IAQ+++ + Sbjct: 508 GLGIRFVGETVAKRLVSAFHSIEALEQ------ASLED----LVAVDEIGERIAQSVLSY 557 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQEYVTQ 672 + + +N V LKE + E+ +++ E K +V +GT K R + + + Q Sbjct: 558 FSDEKNRTLVNR-LKEQGLRMAVSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQ 616 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 G S +S KTD I+ G+N G +KLEKA +LGVKI+NE+ FL +L+ Sbjct: 617 HGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINEDTFLNMLE 664 >gi|83319601|ref|YP_424672.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123740036|sp|Q2SRE1|DNLJ_MYCCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83283487|gb|ABC01419.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 668 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 235/711 (33%), Positives = 399/711 (56%), Gaps = 50/711 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S EQ ++ L+++++ YY P + D+EYD + ++ + +P+ S+ P Sbjct: 1 MSKEQILLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITSDSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + K+GG ++ K+TH P LSL ++N ++ +F T++ + ++ + E Sbjct: 61 S---QKVGGTVSEKFLKITHKTPMLSLGNVFNFDEFLEFNTQVSKVSNNLNNE---YVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE G V AA RG+G GEDV+ +R I +IP L ++ E +EVRGE+ Sbjct: 115 LKIDGLSISLVYENGVLVSAATRGNGVIGEDVTTNVRTIKSIP--LKISKKERVEVRGEI 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+SK +F +N + + + NPRNAA+G LR+L+ + +R L+ F++ + + Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYY-ISDDSP 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 QYE + K+ LGF N I +Y ++ ++++ L Y IDG+V+K+++ + Sbjct: 232 NLNQYESILKLNQLGFKTNKETMLCKNLDQIKAYIDKYTNLKNDLDYQIDGIVFKINDKN 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ LG ++ P+W I++KF + T+LLDI +GRTG +T A+LEPV + GA I+ Sbjct: 292 LQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISA 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+N +YIK +D+R+ V +K+AG+VIP+V++ I +E + + F Sbjct: 352 ATLNNAEYIK-----------SKDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEVFQP 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 +CP C S + ++ N C +CS + L L+HF SR+A NI LG + Sbjct: 401 ILYCPNCHSLLEKNENE------VDQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDRS 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L+ F E I+ +DI+ L+ + +I I FG S NL DSIN +N SL Sbjct: 454 LEILFNLE----IIQNISDIYKLEEYKD----QILAIENFGLKSYLNLIDSINMSKNNSL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGIRH+G++ A+ LA+ Y Q I+N++ + D+ LI++ +G+ +A Sbjct: 506 EKVLFGLGIRHIGSKTAKILARKY-------QNIDNLMKASYDE---LIQINSIGESLAL 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQE 668 +I+++++ N+ + LK + + ++S+ I NK V TGTL + R + + Sbjct: 556 SIIDWFKIEDNLKLINE-LKSFNINFNYLGAKINSDSIIANKTFVITGTLTR-PREEFKT 613 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +S +S++TD ++ G+N GSKLEKA++LGV I++E+QF LL+ Sbjct: 614 LIENNAGKISGSISKQTDYLLAGNNVGSKLEKAKKLGVIIIDEQQFFDLLK 664 >gi|227540068|ref|ZP_03970117.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300] gi|227240084|gb|EEI90099.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300] Length = 673 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 227/715 (31%), Positives = 381/715 (53%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + +++++ L QE+++++ YY ++ +I D ++D + +A+ +P A DP Sbjct: 1 MSAVEIQEKIAQLTQELNHYNYQYYVLAQSLISDYDFDQKLKELEALESQYPQFA---DP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG++ V H P LSL ++ E+LR F R+ +K + + E Sbjct: 58 NSPTRRVGGDITSRFNTVKHRWPMLSLGNTYSQEELRDFDQRV----RKIIGDDFEYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 K DG I++ Y+ GK V RGDG G++V+A +R I +IP L N PE E+RGE Sbjct: 114 LKFDGLSISLTYKDGKLVQGVTRGDGTQGDEVTANVRTIRSIPLTLKTNDYPEEFEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL--GKTS 247 +++ K+ FL LN E G + YANPRN A+G ++ + ++ R L+ F++ L Sbjct: 174 IFMHKSAFLRLNKEREENGDQIYANPRNFAAGTIKLQDSAEVARRPLDCFLYFLYMDNRR 233 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + F+ +E L+ +R GF V + R + + S+ N + R L Y+IDG+V KV+ Sbjct: 234 KHFST-HWESLEAVRKWGFHVCDHTRLCSNIDDVFSFINYWDTERHNLSYEIDGIVIKVN 292 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +++ Q++LG A++PRW S+KF ++ T L I Q+GRTG +TPVA L+PV++ G Sbjct: 293 DYAQQEELGFTAKNPRWATSYKFKAERVETILKSISYQVGRTGAVTPVANLQPVSLAGTT 352 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+LHN + I L D+ D V V++ GE+IPKV+ + +R PDA P Sbjct: 353 VKRASLHNANEIVRL-----------DLHEQDTVYVEKGGEIIPKVIAANLEKRKPDALP 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F +P+ CP CQ+ +VR+ A H C C Q + +++HF+ R +IEG+G Sbjct: 402 FHYPTHCPECQTLLVREEGE------AVHYCPNEDGCPPQIIGKMQHFIGRKMMDIEGMG 455 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ FFK IR DI++L+ ++ +++ + FG S+ N+ I K + Sbjct: 456 NETIETFFKKG----LIRNVVDIYSLKEHEE----ELQQMERFGQKSIDNMLKGIEKSKE 507 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 E+ +F+LGIRHVG IA+ LA Y+ + AQ IA D +G Sbjct: 508 KPFEKVLFALGIRHVGETIAKKLALYFKNIDALAQASVEEIASVQD----------IGGR 557 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRH 664 IA+++ ++ P + ++ LK+ EK V + +E K + +G R Sbjct: 558 IAESVHQYLNTPIHQNQIQK-LKDYGLQFEIEEKEVILAGNGLEGKTFLISGVFADFSRE 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + + G + + +S K + ++ GD G SKL KA++L V I+NE++ L L+ Sbjct: 617 ELTALIESHGGKMVSSISAKLNYLVAGDKMGPSKLAKAEKLQVPIINEQELLVLI 671 >gi|257791950|ref|YP_003182556.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243] gi|325829905|ref|ZP_08163363.1| DNA ligase (NAD+) [Eggerthella sp. HGA1] gi|257475847|gb|ACV56167.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243] gi|325488072|gb|EGC90509.1| DNA ligase (NAD+) [Eggerthella sp. HGA1] Length = 708 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 237/722 (32%), Positives = 378/722 (52%), Gaps = 67/722 (9%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + +L +EI +H YY P I D+ +D+L R + A P+L DP+ P ++GG Sbjct: 25 IDALRREIEHHSYLYYANDAPEISDAAFDSLMRELRELEAAHPELI---DPSSPTQRVGG 81 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + V H+ SL+ ++++L +I R+ + + + E KIDG+ I Sbjct: 82 YVGEQFAPVRHARRMYSLDNAMDLDELDAWIERVTEAFGRM----VPVVCELKIDGSSIA 137 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---------SLNIPEIIEVRGEV 191 + YE G+ + AA RGDG +GEDV+A +R + +P L + P +E+RGEV Sbjct: 138 LTYEDGRLMRAATRGDGTTGEDVTANMRTVKDVPLRLRQGALGGLRDADAP--VELRGEV 195 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K+ F ALN + G++ +ANPRNAA+G LR+ +P+ R L+ F++ + + Sbjct: 196 YMPKSSFDALNVAAVENGKQAFANPRNAAAGSLRQKDPSITANRDLSTFIYAVADERALN 255 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A+GQ+E+L +R GF VN V T + ++ + R LPY+IDG+V KV+ F+ Sbjct: 256 AEGQWELLAWLREAGFHVNPDVELCQTREEVHAFCERAVARREDLPYEIDGVVVKVNSFA 315 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ +G AR+PRW ++ KF ++ +T L DI +Q+GRTG LTPVA L+PV + G+ + Sbjct: 316 QQESMGYTARAPRWAVAFKFPPEEKTTLLRDITVQVGRTGKLTPVAELDPVVVAGSTVAR 375 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED ++ +D+RVGD V+V++AG+VIP+V+ ++ R DA + Sbjct: 376 ATLHNEDEVQ-----------RKDVRVGDTVIVRKAGDVIPEVLGPVLALRPADAVQWEM 424 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S V+R+ G++ RC + C AQ LERL H+ SR A +I+G+G++ Sbjct: 425 PRTCPSCGSPVIRE----EGEV--DFRCI-SIDCPAQALERLLHWASRGAMDIDGMGEEI 477 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQT-----STTKIENILGFGDVSVTNLYDSINKR 545 + +S + AD +TL + + K + G L +I++ Sbjct: 478 VSRLVES----GRLSDVADYYTLDEVELSLLDMGRVNKDGEPIRLGSTVAKKLVAAIDES 533 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R R +F LGIRHVG IA LA Y S I ++ + +D L + VG Sbjct: 534 RTRPFARALFGLGIRHVGKTIAELLAAAYPS-------IEALMEASEED---LAVIDGVG 583 Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTL- 658 IA++ F + P N +E L L + + G + + + V TG+L Sbjct: 584 PKIARSAYLFLRTPDNAAVIERLRSHGVALADEAADAG---EQLPQTLAGLTFVLTGSLV 640 Query: 659 -QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + R +A + GA VS +S+KT ++ G+ GSK +KA L V +++E L + Sbjct: 641 ESGMTRDEAGAVLKARGAKVSGSVSKKTSFVVAGEAAGSKYDKAVALSVPVLDEAALLRI 700 Query: 718 LQ 719 L+ Sbjct: 701 LE 702 >gi|160914436|ref|ZP_02076651.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991] gi|158433594|gb|EDP11883.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991] Length = 664 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 234/698 (33%), Positives = 377/698 (54%), Gaps = 52/698 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL + ++Y YY KP + D EYD + + FP + DPN ++G Sbjct: 8 ELRKILDRLAYE---YYVLDKPSVSDQEYDRYYQELLKLEDEFP---QYRDPNSITQRVG 61 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G + + KV+H LSL+ +N+EDL F R+ + + + + +E K+DG I Sbjct: 62 GVVLDAFEKVSHKRRMLSLDNAFNLEDLMAFDERVRQSVKNPE-----YVVELKMDGLAI 116 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ Y G+FV A RGDG GEDV+ +R I +IP + +++ +EVRGEV + K F Sbjct: 117 SLHYHNGRFVQAVTRGDGLVGEDVTNNVRTIASIP--MHIDMEGDLEVRGEVIMPKKSFE 174 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEML 258 ALN++ G + +ANPRNAA+G +R+L+ +R L+ +++ + E L Sbjct: 175 ALNEQRRKQGEEEFANPRNAAAGSIRQLDSRIAASRKLDAYLYYFEGAQQHAMHTHEEAL 234 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + + + VN + + + EM R+ LPY+IDG+V KV++ LG Sbjct: 235 EALEAMRIKVNPLRKVCKNMQEVWQFIQEMSERRNDLPYEIDGMVLKVNDLHAWDLLGTT 294 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A++PR+ I++KF ++ T+LLDI + +GRTG +TP A LEPV + G ++ ATLHNED Sbjct: 295 AKAPRYAIAYKFPAEEVVTKLLDIVLSVGRTGRITPNAVLEPVRVAGTTVSAATLHNEDM 354 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 IK +D+R+ D V++++AG++IP+VV + R+ + FP CP C Sbjct: 355 IK-----------EKDVRINDDVIIRKAGDIIPEVVRSLPERRNGTQGIYKFPQICPFCG 403 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S++VR + AAH C C A+ + + HF SRDA NI+ LG ++++FF K Sbjct: 404 SKLVRFADE------AAHYCMNQ-DCPARIVRGMIHFASRDAMNIDTLGDKKIEFFHKQ- 455 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 F + DI+ L ++ +I + GF + S + +I + LE +F LG Sbjct: 456 --GF-LNTIEDIYELSLHKE----EILALEGFQEKSFQKMILAIEASKERPLEDLLFGLG 508 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IR VG + AR LAK Y I++++A + L + +G + AQ+I ++ Sbjct: 509 IREVGKKAARVLAKTY-------GNIDDLMAAEEAE---LTAIKDIGVVTAQSIRAYFAE 558 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 P+N + A LK + ++ + I K +V TGTLQ ++R++A+ + +LGA V Sbjct: 559 PKNKELI-AHLKGFGLRMDTDKEVIKESIFTGKTVVLTGTLQYLKRNEAKALLERLGANV 617 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 S +S+KTD++I G+ GSKL KA++LGV M+EE F+ Sbjct: 618 SGSVSKKTDLVIYGEASGSKLSKAKELGVATMDEEAFM 655 >gi|149173204|ref|ZP_01851835.1| DNA ligase [Planctomyces maris DSM 8797] gi|148848010|gb|EDL62342.1| DNA ligase [Planctomyces maris DSM 8797] Length = 671 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 224/713 (31%), Positives = 372/713 (52%), Gaps = 61/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R E+ L +++ +H+ YY +KP I D EYD L +R + + P+ + P P K Sbjct: 4 RTEIEELRKQLEHHNRLYYLDAKPEITDREYDRLMKRLEQLETDHPEY---DSPESPTKK 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG V H +P LS++ I+ +E L +F RI + + + + T E KIDG Sbjct: 61 VGGAPIEGFQTVAHRLPMLSIDNIFELEGLTEFEARICKLLGQ---DQVELTAEYKIDGV 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ YE+G+ + RGDG G+D++ +R I +P R+ + N PE++EVRGE YIS + Sbjct: 118 AVSLIYEEGRLIQGLTRGDGQQGDDITHNVRTIIGVPLRLETENPPELLEVRGEAYISNS 177 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 DF LN EM G++P+AN RN +G L+ L+P R + FF HG+G + + + Sbjct: 178 DFQVLNVEMQEQGKEPFANSRNTTAGGLKLLDPKLCAKRKIRFFAHGIGAMAGVDYQTHI 237 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L ++ +G P GV+ + + M L +++DG+V KV+ F +++L Sbjct: 238 EYLAAIQEMGIPATPGVKAFPDLKTTMEHVQTMMDDLHALDFEVDGIVLKVNRFDQREEL 297 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++SPRW++++K+ +A TR I Q+G+TG +TPVA LEPV I G ++ A+LHN Sbjct: 298 GNTSKSPRWVVAYKWERYEAVTRAESIVFQVGKTGTVTPVANLEPVPIAGTTVSRASLHN 357 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D ++ L I++GD V+V++AG++IP VV + + R Q FP+ CP Sbjct: 358 RDEMERL-----------GIQIGDWVVVEKAGKIIPHVVRVEEHRRDGSQQELEFPTHCP 406 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +++D + G + RC C A E L+++ SR A +IEG+G + ++ Sbjct: 407 ECDTLLIQD---EGGVYI---RCPNP-NCPAMLRETLRYYASRQAMDIEGMGIKMIEQLL 459 Query: 496 KSEDPAFSIRI------PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 I D+ L+R+ G+ S+ NL I + Sbjct: 460 GQGLLKGLADIYRLHNYYGDLVALERQ--------------GEKSIENLLAGIENSKTQP 505 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + L IRHVG+ AR L K + + AQ+ +A ++ +G +IA Sbjct: 506 LWRLLTGLNIRHVGSSNARILEKQFGTIDEIAQQSVEELAAVDE----------IGPVIA 555 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHK 665 +++ F+ + ++ LK ++G + ++E ++ K LV TGTL + R + Sbjct: 556 ESVYTFFHSDFGTKLIDD-LKSAGLNMGSPVEKTTTEAAGILDGKTLVVTGTLTQFTRDE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+E + + G S +S KTD ++ G+ GSKL KA++L V ++ E +FL LL Sbjct: 615 AKELIRKHGGKASGSVSSKTDYLVAGEKAGSKLSKAEELNVPVLTEIEFLELL 667 >gi|226226196|ref|YP_002760302.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27] gi|254781336|sp|C1A6H2|DNLJ_GEMAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226089387|dbj|BAH37832.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27] Length = 689 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 242/712 (33%), Positives = 375/712 (52%), Gaps = 59/712 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++E+AR+ L +++ YY +P + D EYD L R I +P L +ED Sbjct: 12 TVERARE----LREQLGTAQHEYYVLDRPTLSDQEYDRLFRELQGIEAEYPTLC-TED-- 64 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G + + H + LSL+ +++ +L F + R S +T+E Sbjct: 65 SPTRRVGAPVQSAFSPHRHLVRMLSLDNAFDLSELEDFEQSLKRVVGDAIHTS-GYTVEL 123 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 KIDG + + Y +G V AA RGDG GEDV+A +R I +P R+ N P ++EVRGEV Sbjct: 124 KIDGAAVALTYREGVLVTAATRGDGTDGEDVTANVRTIRGVPLRLHGDNHPPLMEVRGEV 183 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG-LGKTSEI 249 Y+ F +N+ +A G Y NPRNAA+G +R+L+ + R L FF + + Sbjct: 184 YLPFAGFERMNEARVAAGEPVYVNPRNAAAGSMRQLDSANTAARPLRFFGYAAVLPDGSA 243 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK-SIRSTLPYDIDGLVYKVDE 308 A+ Q+E+L+++ G PV ++ +T ++ ++ R+TL + IDG V KV++ Sbjct: 244 PARSQWELLEQLSAWGVPVAPHRQRCHTIQEAEAWATVVEHETRATLGFAIDGGVVKVND 303 Query: 309 FSLQKQLGERA-RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +LQ +LG RA R+PRW ++ KFA A T+L ID+ +GRTG+LTP A LEPV++GGA Sbjct: 304 MALQDELGIRADRTPRWGVARKFAPDMALTKLRRIDVNVGRTGVLTPFAVLEPVDVGGAT 363 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +T A+LHN D I +D+R GD V V RAG+VIP V+ + +R QP Sbjct: 364 VTFASLHNADQI-----------AAKDLREGDTVQVVRAGDVIPYVLGPVPEQRDGSQQP 412 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +S P+ CP C + V R G VA + C +AC +QLE L HF S+DA +I+GL Sbjct: 413 WSMPTQCPRCNTPVER-----YGDDVAVY-CP-NVACPGRQLEGLVHFSSKDALDIDGLS 465 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ A + AD+F + Q TS + F S NL +I + Sbjct: 466 YARIQQLLD----AGLVHDVADLFDITVDQLTSLER------FAKKSAENLVAAIAAAKQ 515 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R +F LGIRHVGA+ A+ L++ Y S + + + + L +R +G I Sbjct: 516 QPLSRLMFGLGIRHVGAQAAQLLSRQYGSL--------DALMNATAEQLGAVRG--IGSI 565 Query: 608 IAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 IAQ++ ++ +P +E L L+ P + + +V TGTL + R Sbjct: 566 IAQSVASYFADPTTRALMERLRARGLRFDEP----NAVQADGVLTGATVVLTGTLPSLSR 621 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +A V Q G V++ +S+KT ++ G+ GSKL+KA++LGV ++ E + L Sbjct: 622 GEATALVEQAGGRVTSSVSKKTTFVVAGEEAGSKLDKAKELGVTVLTEAELL 673 >gi|119356312|ref|YP_910956.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266] gi|166215573|sp|A1BDQ5|DNLJ_CHLPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119353661|gb|ABL64532.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266] Length = 676 Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 227/711 (31%), Positives = 371/711 (52%), Gaps = 52/711 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 RK + L +EI+ H+ YY ++P I D E+D L R + AFPD P+ P ++ Sbjct: 8 RKAIEELRREINRHNTLYYVDARPEISDYEFDRLMERLIELEKAFPDFV---TPDSPSHR 64 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + V H P LSL +++ ++ F +R+ + + E K DG Sbjct: 65 VGGAITREFPSVRHREPMLSLSNTYSLAEVEDFYSRVKKLLLVEGVREQDMAAELKFDGV 124 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEI------IEVRGE 190 I++ Y G V A RGDG G+D++ ++ + ++P R+ ++P I IE+RGE Sbjct: 125 AISLLYRDGLLVQGATRGDGTEGDDITTNLKTLSSVPLRIPLTSLPVIEGIERDIEIRGE 184 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSE- 248 V++ K+DF LN+ R +ANPRNA +G L+ + ++ R LNF + L +S+ Sbjct: 185 VFMQKDDFARLNEARPEEDR--FANPRNATAGTLKLQDSGEVARRRLNFVAYYLRLSSQD 242 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 F QY+ L+ + LGF R I + R LPY+ DG+V K+++ Sbjct: 243 SFLLTQYDRLELLGQLGFFTGKHYRLCRDMKEIGDFIGYWAVERWNLPYETDGVVLKLND 302 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +L ++G A+SPRW I++K+ +QA T L + Q+GR G +TPVA LEPV + G+ + Sbjct: 303 VALWPRIGATAKSPRWAIAYKYPAQQAKTVLQGVAFQVGRLGTVTPVAELEPVRLAGSTV 362 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + +TLHN D I+ L + + DRV+++++GEVIPKV+ ++++ER +A+P Sbjct: 363 SRSTLHNFDEIERL-----------GLMLHDRVIIEKSGEVIPKVIRVVLDERPENAEPV 411 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 PS CP C + + + N ++ C +C AQ RL HF SR+A +I+ LG+ Sbjct: 412 GVPSVCPECGASLEKPENE------VSYYCPDQDSCPAQIRGRLLHFASRNALDIQSLGE 465 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + +R D++ LQ+ Q +E + G S NL ++ + R Sbjct: 466 SLVAQLVQKG----LVRDAGDLYLLQQPQ------LEALERMGRKSAHNLLRALQESREK 515 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S ER +++LGIRHVG AR LA+ Y + A N L VP VG ++ Sbjct: 516 SYERLLYALGIRHVGQATARELARAY----------ETVEALQNASEEELATVPDVGPVV 565 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A ++ +++ + L P +K ++ E ++FTG L++ R +A Sbjct: 566 AHSVKDYFSKSSTQMLLRKLRDAGFPLRFTGPQKLINRNFEGVNVLFTGALERYGRQQAS 625 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E V Q G V +SR T +++ G PGSKL+KA++LGVK+++E++F +L Sbjct: 626 ELVQQRGGRVVGSVSRSTGVVVAGSEPGSKLDKARKLGVKVISEDEFNAML 676 >gi|265764018|ref|ZP_06092586.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16] gi|263256626|gb|EEZ27972.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16] Length = 665 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 233/707 (32%), Positives = 371/707 (52%), Gaps = 52/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L ++ H+ YY + P I D E+D L R + P+ +D N P + Sbjct: 4 KEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK + A RGDG G+DV+ ++ I +IP +L N PE+ E+RGE+ + Sbjct: 117 SISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLILHGDNYPEVFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + +R L+ +++ L + G Y Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF ++ +R+ T + + N R L DG+V KV+ Q+ L Sbjct: 236 ENLQEAAKWGFKISPLMRKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSARFMIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R G+ AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I AD++ Q +T I + GD S N+ I + + + ER IF Sbjct: 459 R----LGLIHDTADLY------QLTTDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVIF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + +I N D +LI + +G+ IA++I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSF----------KDIEELENADLETLINIDEIGEKIARSILNY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + N N V LK + R E+++S ++ + +V +G R + ++ + + Sbjct: 559 FANESNRKLV-GRLKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTYHSRDEYKDLIEK 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ GDN G +KLEKA +LG+KIMNEE+FL L+ Sbjct: 618 HGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664 >gi|152965283|ref|YP_001361067.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216] gi|190359261|sp|A6W7L4|DNLJ_KINRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151359800|gb|ABS02803.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216] Length = 696 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 226/710 (31%), Positives = 356/710 (50%), Gaps = 47/710 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR L +I YY + + D +YDAL+R A+ P L P+ P Sbjct: 12 EARHRWEDLVAQIEAARFAYYVRNSSPLSDGQYDALERELRALEEQHPQL---RTPDSPT 68 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +GG + V H LSL+ ++ ++L + R+ +++ + EPKID Sbjct: 69 QTVGGTFSTEFTTVDHPERMLSLDNAFSTDELSAWAARV----EREVGAGARYLCEPKID 124 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G I + YE G+ V RGDG +GEDV+ +R + +P R+ ++PE +EVRGEV+ Sbjct: 125 GLAIDLVYEDGRLVRGVTRGDGRTGEDVTFNVRTVEDVPHRLTGADVPEFLEVRGEVFFH 184 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 + F A+N ++ G+ P+ANPRNAA+G LR+ +P TR L VHG+G + Sbjct: 185 LDGFAAINAGLVEAGKPPFANPRNAAAGSLRQKDPRVTATRPLRMLVHGVGARRGMENDT 244 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q +K+ G P + V+ +T + Y R + ++IDG+V KVD+ LQ+ Sbjct: 245 QSGAYEKLAAWGLPTSPRVKVVDTLDEVAEYVRFYGEHRHDVEHEIDGVVVKVDQVPLQR 304 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP A LEPV + G+ + ATL Sbjct: 305 RLGSTSRAPRWAIAYKYPPEEVTTSLLDIQVNVGRTGRVTPFAVLEPVKVAGSTVAMATL 364 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN + +V+R G + +GD V+V++AG+VIP+V+ +V R + F P+ Sbjct: 365 HN---------ASEVVRKG--VLIGDTVVVRKAGDVIPEVLGPVVESRTGAEREFVMPTV 413 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + + RC +C AQ ER+ H R +F++E LG + Sbjct: 414 CPECGTPLAHQRADDVDI-----RCPNSRSCPAQLRERVFHLAGRGSFDVEALGDKAAAA 468 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTS----TTKIENILGFGDVSVTNLYDSINKRRNIS 549 + A I D+FTL TTK + G + NL+D R++ Sbjct: 469 LLQ----AGVIADEGDLFTLTEDDLVGVPLFTTKAGTVSANGRRLLANLHD----RKDQP 520 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + L IRHVG AR+LA + S + IA VG IA Sbjct: 521 LWRVLVGLSIRHVGPTAARALADRFGSMEAIEAATAEDIASAEG----------VGPTIA 570 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +A+VE+ + V + +++ +E +V TG+L R +A+E Sbjct: 571 EAVVEWLAVDWHRDVVRKWREAGVRMADERDESTPRTLEGLTIVVTGSLSGFSRDEAKEA 630 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V G S+ +S+KT ++VG+ GSK +KA+QLGV +++EE F+ LL+ Sbjct: 631 VLSRGGKASSAVSKKTSFVVVGEAAGSKADKAEQLGVPVLDEEGFVALLE 680 >gi|301163404|emb|CBW22954.1| putative DNA ligase [Bacteroides fragilis 638R] Length = 665 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 233/707 (32%), Positives = 371/707 (52%), Gaps = 52/707 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L ++ H+ YY + P I D E+D L R + P+ +D N P + Sbjct: 4 KEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDINKNFTQVAHKYPMLSLSNTYSENEVTDFYDRV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK + A RGDG G+DV+ ++ I +IP VL N PE+ E+RGE+ + Sbjct: 117 SISLTYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPEVFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F ALN E A +ANPRNAASG L+ N + +R L+ +++ L + G Y Sbjct: 177 VFEALNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPTDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF ++ + + T + + N R L DG+V KV+ Q+ L Sbjct: 236 ENLQEAAKWGFKISPLMHKCQTLQEVFDFINYWDVERKNLNVATDGIVLKVNSLKQQRNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + CP Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDTSVRFMIGEKVKFITHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S+++R G+ AAH C AC Q +++HF+SR A NI+GLG + +D F+ Sbjct: 405 ECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFY 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + I AD++ L +T I + GD S N+ I + + + ER IF Sbjct: 459 R----LGLIHDTADLYRL------TTDDIRGLDRMGDKSAENIIKGIMQSKEVPFERVIF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG +A+ +AK + + N D +LI + +G+ IA++I+ + Sbjct: 509 ALGIRFVGETVAKKIAKSFKDIEEL----------ENADLETLINIDEIGEKIARSILNY 558 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + N N V+ LK + R E+++S ++ + +V +G R + ++ + + Sbjct: 559 FANESNRKLVDR-LKTAGLQLYRPEEDLSGHTDKLAGQSIVISGVFTHHSRDEYKDLIEK 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G +S KT I+ GDN G +KLEKA +LG+KIMNEE+FL L+ Sbjct: 618 HGGKNVGSISSKTSFILAGDNMGPAKLEKASKLGIKIMNEEEFLKLI 664 >gi|145356969|ref|XP_001422695.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582938|gb|ABP01012.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 755 Score = 367 bits (942), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 255/773 (32%), Positives = 386/773 (49%), Gaps = 99/773 (12%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 HD YY ++P+I DSEYD ++ R DAIA A P A++ + + L K+ Sbjct: 2 HDGKYYNDAEPVISDSEYDGMRARYDAIAAAHPTAAKAGGARARVGATPDGAS-GLEKIA 60 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRF-----WQKKDDNSIFFTLEPKIDGTMITIRYEK 145 H++P SL +++ + F+ R+ + + +I + EPK+DG ++RYE Sbjct: 61 HAVPMRSLGNAFDVGQVEAFMKRVEKLRGETEGEAATTTAIEYCAEPKVDGASASLRYEN 120 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205 G+ VYA RGDG GEDV+ + +P L+ P ++E+RGEV+++ DF +N E Sbjct: 121 GELVYAVSRGDGEMGEDVTRHLIGARGVPMKLAEPYPAVLEIRGEVHVADEDFQRVNAER 180 Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS----EIFA--KGQYEMLQ 259 A G + + N RNAA+G +R L D L F +G G E A + Q E L Sbjct: 181 AATGLRVFKNARNAAAGAMRTLVVDDNQMPLRFLAYGWGAVGASNEETNAPWRTQSEFLS 240 Query: 260 K-MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + GF + A T ++ Y+ ++ R T+PY+IDG+VYKV+ LQ LG Sbjct: 241 AFLPAQGFDAVPFLGVAKTIGELIEAYDALEIARPTMPYEIDGVVYKVNSVELQTALGAD 300 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 AR PRW I+HKF A T L I+IQ+GRTG LTPVA L+PV+IGGA I+ ATLHN D Sbjct: 301 ARQPRWAIAHKFTAMSAVTTLRAIEIQVGRTGALTPVALLDPVDIGGASISRATLHNFDE 360 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII------VNERHPDAQPFS--- 429 I + ++VG +V V+RAG+VIP+VV + + D +P Sbjct: 361 IA-----------RKHLKVGAQVTVERAGDVIPRVVSLAGDDLAEASAYAEDIKPLPEWL 409 Query: 430 FPSFCPICQSRVVR-DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 PS CP C S VVR L+ + + RCTGGL C +Q +ERL HF +RDA +I GL + Sbjct: 410 PPSKCPDCGSSVVRAPLSASKTAMGSIVRCTGGLKCPSQSMERLLHFCARDALDIRGLAR 469 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRR-QQTSTTKIENILGFGDV-------------- 533 L+ + ++ PADIFTL+RR S + + V Sbjct: 470 GTLETLHREG----VVKTPADIFTLERRFGPDSGDAVPTWWRYAGVKNSKGEIKHGSDGL 525 Query: 534 --SVTNLYDSINKRR-NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--- 587 S L+ +I RR + L RFI++LGI ++GA A+ LA +Y S F + Sbjct: 526 KQSAVKLFQAIEVRRQGVPLHRFIYALGIPNIGAHTAKVLATHYGSLAAFKKAALAAAKG 585 Query: 588 ----IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN------ICAVEALLKEVSPSIG 637 +AH +L V VG ++AQ++V+F+ P N I A ++ + S Sbjct: 586 GPASLAHA-----ALTHVDGVGPVLAQSLVDFWGEPGNAFIVDEIIATGVVVLDADASSS 640 Query: 638 RHEKN------------------------VSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +++ + ++++ K++FTGT+ R + + Sbjct: 641 KNQPSPRFAEPASSSSVSPTPSPTVPSPEPTADLRGMKILFTGTIDGFSRDDVHDLIRAA 700 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 G V++ LSRKT +++ G G SKL KA+ L V I++ +F+ L + +L Sbjct: 701 GGDVASTLSRKTALVVAGVGAGPSKLAKARDLAVPIVDASRFVSALTSGDGSL 753 >gi|256383839|gb|ACU78409.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str. GM12] gi|256384670|gb|ACU79239.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str. GM12] gi|296455996|gb|ADH22231.1| DNA ligase, NAD-dependent [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 668 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 238/712 (33%), Positives = 398/712 (55%), Gaps = 52/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++A ++ L+++++ YY P + D EYD + ++ +P+L S+ P Sbjct: 1 MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITSDSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + K+GG ++ K+TH P LSL +++ ++ F T+I + D+ + E Sbjct: 61 S---QKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQISKVSNTLDNQ---YVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE G V AA RG+G GEDV+ ++ I +IP L +N E +EVRGE+ Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINVKTIKSIP--LKINKKERVEVRGEI 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEI 249 Y+SK +F +N + + + NPRNAA+G LR+L+ + +R L+ F + + S Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSNN 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 QY+ + K+ LGF N I +Y ++ ++++ L Y IDG+V+K+++ Sbjct: 233 LT--QYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDK 290 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ LG ++ P+W I++KF + T+LLDI +GRTG +T A+LEPV + GA I+ Sbjct: 291 NLQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATIS 350 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATL+N +YIK +D+R+ V +K+AG+VIP+V++ I +E + + F Sbjct: 351 AATLNNAEYIK-----------SKDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEVFQ 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 +CP C S + ++ N C +CS + L L+HF SR+A NI LG + Sbjct: 400 PILYCPNCHSLLEKNENE------VDQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDR 452 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ F + I+ +DI+ L+ + IEN FG S NL DSIN +N S Sbjct: 453 SLEILFNLK----IIQNISDIYRLEEYKD-EILAIEN---FGLKSYLNLIDSINMSKNNS 504 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LE+ +F LGIRH+G++ A+ LA+ Y Q I+N++ + D+ LI++ +G+ +A Sbjct: 505 LEKVLFGLGIRHIGSKTAKILARKY-------QNIDNLMKASYDE---LIQINSIGESLA 554 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQ 667 +I+++++ N+ ++ LK + + ++S+ I NK V TGTL + + Sbjct: 555 LSIIDWFKIEDNLKLIDE-LKSFNINFNYLGAKINSDSIIANKSFVITGTLTRPREEFKT 613 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ +I S++TD ++ G+N GSKLEKA++LGVKI++E+QF LL+ Sbjct: 614 LIENNAGKVIGSI-SKQTDYLLAGNNVGSKLEKAKKLGVKIIDEQQFFDLLK 664 >gi|255535523|ref|YP_003095894.1| DNA ligase [Flavobacteriaceae bacterium 3519-10] gi|255341719|gb|ACU07832.1| DNA ligase [Flavobacteriaceae bacterium 3519-10] Length = 667 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 223/710 (31%), Positives = 375/710 (52%), Gaps = 51/710 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E ++++ +L +EI H+ YY +P I D E+D + + FP+ D N P Sbjct: 3 ENIQQKIDALRKEIHQHNYSYYSLDEPTISDFEFDLKLKELQDLELQFPEFY---DNNSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG++ + V H SL+ ++ DL ++ RI +K + + F E K Sbjct: 60 TLRVGGQITKNFPTVQHQFRMFSLDNSYDFNDLEEWEKRI----RKTLNEPVEFVAELKY 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I+I YE GK A RGDG G+++++ ++ I IP L + PE +RGE+Y++ Sbjct: 116 DGASISILYENGKLNEAVTRGDGFQGDEITSNVKTISQIPMQLHGDFPERFFMRGEIYLT 175 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253 +F +N G P+ NPRN ASG L+ + ++ R L+ ++ + A+ Sbjct: 176 HQNFEKINKRREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSAVLYQF-ISENTAAQT 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E+LQK + GF +++ + + ++ N R TL +DIDG+V KV++ + Q+ Sbjct: 235 HWELLQKAKSWGFRISDQAKLCADLDEVKAFINFWDENRHTLAFDIDGIVVKVNDLAQQR 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG A+SPRW +++K+ ++A T L + Q+GRTG +TPVA L+PV + G ++ A+L Sbjct: 295 VLGYTAKSPRWAMAYKYKAEKAETELQTVTYQVGRTGAITPVANLKPVLLAGTVVKRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED I+ L + D V V++ GE+IPK+V + + +R+P + Sbjct: 355 HNEDIIRKL-----------GLYEHDFVYVEKGGEIIPKIVGVNLAKRNPANAEIQYIKN 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + ++R + A H C L C Q + R+ H+VSR A NIE LG + ++ Sbjct: 404 CPECSTALIRVEDQ------AIHFCPNELHCPPQVIGRMIHYVSRKALNIENLGSETIEQ 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + + PAD + L + Q ++ + S N+ I K + I+ E+ Sbjct: 458 LYREK----LVENPADFYALTKEQLLPLERM------AEKSAQNIITGIEKSKEIAFEKV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F +GI+HVG +A+ L K NF N+I N L++V +G IA++I Sbjct: 508 LFGIGIKHVGETVAKKLVK------NF----NSIDDLKNATAAELVQVEDIGLKIAESIT 557 Query: 614 EFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 EF++NP N+ +E L ++ HE +S+ ++ K +FTG L R A+E V Sbjct: 558 EFFKNPENVLMIERLKSYGVKLEKGADTHEV-LSNALDGKTFLFTGKLSLFTRDDAEEMV 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ 719 + G + +S+ D ++VG+ GSKL+KAQ++G + I++E+QFL LLQ Sbjct: 617 EKHGGKNISAVSKNLDFLVVGEKAGSKLKKAQEIGTITILDEQQFLDLLQ 666 >gi|171779630|ref|ZP_02920586.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281732|gb|EDT47166.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 652 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 228/698 (32%), Positives = 369/698 (52%), Gaps = 57/698 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L E++ + YY +P + DSEYD L R + A PDL P+ P Sbjct: 2 KERIQKLVDELNQYRKEYYTQDQPTVSDSEYDKLYRELVELEKANPDLIL---PDSPTQA 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ K + + + E KIDG Sbjct: 59 VGGLILDGFEKYQHETPLYSLQDAFSREELDDFDRRV-----KAEFPNASYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +++ Y G A RGDG GE+++ ++ I IP L P I VRGE Y+ + Sbjct: 114 SVSLVYVDGVLQVGATRGDGSIGENITENVKRIKDIPH--KLEEPLTITVRGEAYLPRES 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255 F +N+E G+ +ANPRNAA+G LR+LN + + FF + TS Q Sbjct: 172 FDKINEERRESGQSEFANPRNAAAGTLRQLNTAVVAKRNLATFFYQEVASTS---MTTQN 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L+++ GF VN ++ I ++ E+ + R +LPYDIDG+V KV+ ++Q++L Sbjct: 229 DVLEELSRYGFSVNPRRITTSSMEDIWAFIQEVAAERDSLPYDIDGIVIKVNSLAMQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR+GD V+V +AG++IP V+ ++ ++R+ P P CP Sbjct: 349 VDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVESKRNKQV-PMPIPETCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S ++ + A RC L C +Q ERL HF SRDA NI GLG + F Sbjct: 397 SCGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 ++ + ADI+ L S + + GF + S LY++I + S E+ +F Sbjct: 450 TAD----LVHDVADIYRL------SVEDLLTLDGFKEKSAEKLYNAIQASKANSAEKLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIRHVGA+ +R L + + + I N++A + + ++ + +G +IA+++ + Sbjct: 500 GLGIRHVGAKASRQLLEVF-------ESIENLVAADEE---AIANIDGLGTVIAKSLRSY 549 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + + + A LK + K VS +++ +V TG LQ++ R++A+E + L Sbjct: 550 FAK-KEAEELLAELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLQRLTRNEAKEKLQDL 608 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 GA V+ +S+KTDI++ G + GSKL KAQ LG+ + +E Sbjct: 609 GAKVTGSVSKKTDIVVAGADAGSKLTKAQALGIDVRDE 646 >gi|255691906|ref|ZP_05415581.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565] gi|260622459|gb|EEX45330.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565] Length = 666 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 236/705 (33%), Positives = 370/705 (52%), Gaps = 53/705 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L E+ H+ YY + P I D E+D R + A P+ +D N P ++G Sbjct: 7 IEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEEAHPEY---KDENSPTMRVGS 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 ++N + +V H P LSL ++ E++ F R+ +K + E K DGT I+ Sbjct: 64 DLNKNFTQVAHKYPMLSLANTYSEEEVTDFYERV----RKALNEDFEICCEMKYDGTSIS 119 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFL 199 + YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + F Sbjct: 120 LTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMPWEVFE 179 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEML 258 ALN E +ANPRNAASG L+ N + + +R L+ +++ L + G YE L Sbjct: 180 ALNREKEVREEPLFANPRNAASGTLKLQNSSVVASRKLDAYLYYL-LGENLPCDGHYENL 238 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 Q+ GF +++ +R+ T + + N R LP DG+V KV+ QK LG Sbjct: 239 QEAAKWGFKISDLMRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNLGFT 298 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN D Sbjct: 299 AKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNADI 358 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPSFCPIC 437 I+GL D+ +GD V V++ GE+IPK+ + V+ R + F + CP C Sbjct: 359 IEGL-----------DLHIGDMVYVEKGGEIIPKITGVDVDARSFMVGEKVRFITTCPEC 407 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S++VR G+ AAH C AC Q +++HF+SR A +I+GLG + +D F++ Sbjct: 408 GSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMDIDGLGPETVDMFYR- 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I AD++ L + I+ + G+ S N+ I + + + ER IF+L Sbjct: 461 ---LGLIHNTADLYKL------TIDDIKGLERMGEKSAENIVTGIAQSKTVPFERVIFAL 511 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +AK + NI D L+ + +G+ IAQ+I+ ++ Sbjct: 512 GIRFVGETVAKKIAKSF----------ENIDELKRADLERLVSIDEIGEKIAQSILTYFA 561 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 N N C + LKE R E+++S ++ + +V +G R + +E + + G Sbjct: 562 NEAN-CELVNRLKEAGLQFYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEYKELIEKNG 620 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +S KT I+ GDN G +KLEKAQ+LG+ I++E++FL L+ Sbjct: 621 GKNVGSISAKTSFILAGDNMGPAKLEKAQKLGITILSEDEFLKLI 665 >gi|42561289|ref|NP_975740.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400468|sp|Q6MSK8|DNLJ_MYCMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|42492787|emb|CAE77382.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320499|gb|ADK69142.1| DNA ligase (NAD(+)) [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 668 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 237/712 (33%), Positives = 398/712 (55%), Gaps = 52/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++A ++ L+++++ YY P + D+EYD + ++ +P+L S+ P Sbjct: 1 MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLETLYPELITSDSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + K+GG ++ K+TH P LSL +++ ++ F T+I + D+ + E Sbjct: 61 S---QKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQISKISNTLDNQ---YVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE G V AA RG+G GEDV+ R I +IP L ++ E +EVRGE+ Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINARTIKSIP--LKISKKERVEVRGEI 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEI 249 Y+SK +F +N + + + NPRNAA+G LR+L+ + +R L+ F + + S Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSNN 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 QY+ + K+ LGF N I +Y ++ ++++ L Y IDG+V+K+++ Sbjct: 233 LT--QYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDK 290 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ LG ++ P+W I++KF + T+LLDI +GRTG +T A+LEPV + GA I+ Sbjct: 291 NLQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGAKIS 350 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATL+N +YIK +D+R+ V +K+AG+VIP+V++ I +E + F Sbjct: 351 AATLNNAEYIK-----------TKDLRINSIVKIKKAGDVIPEVIEAIKDEDFYKLEKFK 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 +CP C S + ++ N C +CS + L L+HF SR+A NI LG + Sbjct: 400 PALYCPNCHSLLEKNENE------VDQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDR 452 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ F + I+ +DI+ L+ + +I I FG S NL DSIN +N S Sbjct: 453 SLEILFNLK----IIQNISDIYKLEEYKD----QILAIDNFGLKSYLNLIDSINMSKNNS 504 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LE+ +F LGIRH+G++ A+ LA+ Y Q I+N+++ + D+ LI++ +G+ +A Sbjct: 505 LEKVLFGLGIRHIGSKTAKILARKY-------QNIDNLMSASYDE---LIQINSIGESLA 554 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQ 667 +I+++++ N+ ++ LK + + ++S+ I NK V TGTL + + Sbjct: 555 LSIIDWFKIEDNLKLIDE-LKSFNINFNYLGAKINSDSIIANKSFVITGTLTRPREEFKT 613 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ +I S++TD ++ G+N GSKLEKA++LGVKI++E+QF LL+ Sbjct: 614 LIENNAGKVIGSI-SKQTDYLLAGNNVGSKLEKAKKLGVKIIDEQQFFDLLK 664 >gi|210630510|ref|ZP_03296493.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279] gi|210160444|gb|EEA91415.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279] Length = 756 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 242/730 (33%), Positives = 365/730 (50%), Gaps = 73/730 (10%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L + YH YY P I D+ +D L I A P+L P+ ++GG ++ Sbjct: 54 LRHLLDYHAYRYYALDAPEISDAAFDKLLIELQQIEAAHPELVT---PDSYTQRVGGYVS 110 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 VTH S++ N+E+L +++ R + +T E KIDG + I Y Sbjct: 111 EQFTPVTHMARMYSMDDAMNLEELDEWLARTEDALGA---GRVAYTCELKIDGLGVAITY 167 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--------LNIPEIIEVRGEVYISK 195 + G FV AA RGDG +GEDVS +R I +P LS + IEVRGEVY+ K Sbjct: 168 QNGAFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEAALAHMGADRSAPIEVRGEVYMPK 227 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN E A GR+P+ANPRNAA+G LR+ +P +R+L F++ + T+ + Q Sbjct: 228 GSFARLNAEADAEGREPFANPRNAAAGSLRQKDPKVTASRHLATFIYAIADTAPLHVDSQ 287 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + L +R GF VN V + + + ++ + + R L YDIDG+V KVD F Q Sbjct: 288 HAFLDWLRRAGFSVNGSVARCTSPAEVHAFCADALAHRGDLDYDIDGVVVKVDSFDQQGD 347 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW I+ KF ++ +T L DI IQ+GRTG+LTPVA +PV + G+ I ATLH Sbjct: 348 LGFTARAPRWAIAFKFPPEEKTTVLRDIRIQVGRTGVLTPVAEFDPVTVAGSTIARATLH 407 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ +D+R GD ++V +AG+VIP+VV ++++R + P+ C Sbjct: 408 NLDEIR-----------RKDVRPGDTIIVHKAGDVIPEVVGPVLDKRPEGTAEWDMPATC 456 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S VV + G++ A+RC L C AQ ERL H+VSR +++G+G + +D Sbjct: 457 PACGSPVVHE----DGEV--AYRCV-SLDCPAQLKERLLHWVSRGCMDVDGVGDELIDKM 509 Query: 495 FKS---EDPAFSIRIPADIF-------TLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 ++ D A + D T + + + + G + D + + Sbjct: 510 IEAGLLHDVADFYHLTVDAVAALDTGRTYLKDDKKKGVSAGDSIKVGATIAQKVVDELTR 569 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R L R +F+LGIRHVG +A +A+ +L+ A IA + Sbjct: 570 SREQPLSRVLFALGIRHVGKSVAEVIAQRFLTVDALAAASEEDIAGCEG----------I 619 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSI----------GRHEKNVSSEIENKK--- 651 G IA ++ +F P N+ ++ L+E S+ E V++++ + Sbjct: 620 GPKIAASVRQFLAVPENLEVLQ-RLREAGLSLEEDLGAAHAQAAQETGVAADLAEAQPLA 678 Query: 652 ---LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 V TGTL R +A + LGA VS +S+KT ++ G GSKL KA+ LGV + Sbjct: 679 GLTFVLTGTLVNRTRDEAGAALKLLGAKVSGSVSKKTSYLVAGPKAGSKLTKAESLGVPV 738 Query: 709 MNE---EQFL 715 ++E EQ L Sbjct: 739 LDEAALEQIL 748 >gi|189499438|ref|YP_001958908.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1] gi|254781285|sp|B3EM49|DNLJ_CHLPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189494879|gb|ACE03427.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1] Length = 684 Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 232/726 (31%), Positives = 370/726 (50%), Gaps = 64/726 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +QA E+ L +EI H+ YY ++P I D +YDA+ + A+ FP+L S+ P+ Sbjct: 4 KQAVAEIIRLREEIDRHNYRYYVLARPEISDFQYDAMLEKLVALEGEFPELKTSDSPS-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + V H P LSL ++IE++ +F R+ + ++ +S F E K Sbjct: 62 -QRVGGGITKEFPTVEHREPMLSLSNTYSIEEVGEFYHRVVKLLPEEHRDSPEFVAELKF 120 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE----------- 183 DG +++ Y G V A RGDG G+D++ IR I ++P L L P Sbjct: 121 DGVAVSLLYRDGLLVRGATRGDGSQGDDITGNIRTIRSVP--LRLGNPSGSGEGVERYEG 178 Query: 184 -IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG 242 IEVRGEV+++K DF LN+ R +ANPRNA +G L+ + +++R FV Sbjct: 179 REIEVRGEVFMTKTDFAVLNEGRPEEER--FANPRNATAGTLKLQDSGEVSRRKMVFVAY 236 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST-LPYDIDG 301 K S E L+ + LGF R T I Y + + R T LPY+IDG Sbjct: 237 YLKESSAEIISHAERLELLERLGFYTGGEHRVCRTLKDIREYIDGWQKKRLTGLPYEIDG 296 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V K++ +L+ +LG ++SPRW I++KF ++A T + I Q+GR G +TPVA LEPV Sbjct: 297 IVLKLNNTALRDELGATSKSPRWAIAYKFPAERARTVIRSIVFQVGRLGTITPVAELEPV 356 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G ++ +TLHN + ++ L D+R+ D V+++++GE+IPKV+ ++ +R Sbjct: 357 RLAGTTVSRSTLHNLEEVERL-----------DVRLHDTVVIEKSGEIIPKVISVVEEKR 405 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P P P CP C + +V+ N + C C AQ R++HF SR+A Sbjct: 406 RPGTLPVVVPESCPSCGTPLVKPPNE------VHYYCPNSEGCPAQTKARIEHFASRNAM 459 Query: 482 NIEGLGKQQLDFFFKSE---DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +I GLGK ++ S D R+ D+ RQ + S NL Sbjct: 460 DINGLGKAIVEQLVSSGMVVDAGDLYRLTPDLIMRLDRQ-------------AEKSAGNL 506 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 ++I K RN R +F+LGIRHVG AR LA Y + + ++ D Sbjct: 507 VNAIAKSRNREYFRVLFALGIRHVGIATARELAGAYPTLDMLCKASVEALSDVTD----- 561 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGT 657 VG +IA+++ F++ P +E L + V + +K V+ + K++FTG Sbjct: 562 -----VGPVIAESVHAFFRKPSATAMIEKLREAGVRLEAEKTKKPVNLNFDGMKVIFTGA 616 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L++ R +A V + G A +S+ T++++ G PGSKLEKA++LGV+++ E +F + Sbjct: 617 LERYTRDEAAGLVRERGGKTVASVSKNTNLVVYGKEPGSKLEKARKLGVRVITESEFEEM 676 Query: 718 LQQYNT 723 L + + Sbjct: 677 LGEVGS 682 >gi|300779557|ref|ZP_07089415.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910] gi|300505067|gb|EFK36207.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910] Length = 667 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 220/711 (30%), Positives = 369/711 (51%), Gaps = 51/711 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E ++++ L +E+ H++ YYQ P I D E+D L + + +P+ D N P Sbjct: 3 ENIQQKIEQLRKELHQHNENYYQLDTPTITDFEFDMLLQELQDLEARYPEFY---DENSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG + + H SL+ ++ +DL + RI K D+ + F E K Sbjct: 60 TVRVGGGVTKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRII----KTIDDPVEFVAELKY 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I+I YE GK A RGDG G++++ +R I IP L + P +RGE+Y++ Sbjct: 116 DGASISILYENGKLSQAVTRGDGFQGDEITPNVRTISDIPLTLKGDFPAQFFMRGEIYLT 175 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253 + +F +N G P+ NPRN ASG L+ + ++ R L+ ++ + E+ A+ Sbjct: 176 RKNFDKINKLREEEGLDPFMNPRNTASGSLKMQDSAEVRKRGLSSVLYQF-ISDEVPAES 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E+LQK + GF + + T + + + R LP++IDG+V KV+ Q+ Sbjct: 235 HWELLQKAQSWGFKTSQQAKLCKTMAEVQEFITFWDTERHNLPFEIDGIVLKVNSLQQQR 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG A+SPRW +++KF ++ T L + Q+GRTG +TPVA L+PV + G ++ A+L Sbjct: 295 QLGYTAKSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRASL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HNED IK L D+ D V V++ GE+IPK+V + +R +++ + Sbjct: 355 HNEDIIKKL-----------DLHEHDFVYVEKGGEIIPKIVGVNTGKRTEESKEIEYIKH 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + +V+ + A H C L C Q + R+ H+VSR A NI+ LG + ++ Sbjct: 404 CPECGTELVKIEDQ------AIHFCPNELHCPPQVVGRMIHYVSRKALNIDNLGSETIEQ 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ I PAD + L + Q ++ + S N+ I K + + E+ Sbjct: 458 LYRER----LIENPADFYVLTKEQLLPLERM------AEKSAQNIITGIEKSKEVPFEKV 507 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 ++ +GI+HVG +A+ L K + + +E+ N L +V +G IA +IV Sbjct: 508 LYGIGIKHVGETVAKKLVKNFPT----IEELKNATIE------ELCQVEDIGTKIAVSIV 557 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +F+QNP N+ +E LK + + E +S+ +E K +FTG L R A+E V Sbjct: 558 DFFQNPENVLMIER-LKSYGVQLEKGESTNEVLSNVLEGKTFLFTGKLSLFTRESAEEMV 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720 + G + +S+ + +IVG+ GSKL+KAQ +G + I++E+QFL L+++ Sbjct: 617 EKHGGKNISAVSKNLNYLIVGEKAGSKLKKAQDIGTITILDEQQFLDLIEK 667 >gi|89891625|ref|ZP_01203129.1| DNA ligase [Flavobacteria bacterium BBFL7] gi|89516172|gb|EAS18835.1| DNA ligase [Flavobacteria bacterium BBFL7] Length = 684 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 233/718 (32%), Positives = 375/718 (52%), Gaps = 54/718 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ SL E+ H+ YY P I D E+D + + A P+ D P + Sbjct: 4 KEQIQSLRDELREHNYNYYVNDNPTISDFEFDKKLEQLKTLEAAHPEFY---DATSPSVR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ + + H SL+ ++IEDLR + RI +K D I +T E K DG Sbjct: 61 VGGEVTKNFNTIKHINRMYSLDNSYSIEDLRDWEKRI----KKIVDGEIQYTCELKYDGA 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GKFV A RGDG+ G++V+A +R I ++P L ++P E+RGE+ + + Sbjct: 117 SISLHYENGKFVQAVTRGDGNQGDEVTANVRTIKSVPLQLKGDDVPAKFEIRGEIVLPWD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F +N+E G Y NPRN ASG L+ + ++ R L+ ++ L + + K Q+ Sbjct: 177 GFHKMNEERADQGLDLYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQLAGEN-LPVKSQF 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + L R GF + ++ + + N R LPY+ DG+V KV+ Q +L Sbjct: 236 DSLTLARKWGFKAPQESKLVHSIEEVFEFINHWDVARKELPYETDGVVIKVNSLDQQDEL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A++P+W +++KFA +Q STRL +I Q+GRTG +TPVA LEPV I G + A+LHN Sbjct: 296 GFTAKAPKWAMAYKFAAEQVSTRLEEITYQVGRTGSITPVANLEPVEISGTTVRRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L DIRVGD V V++ GE+IPK+V + + +R ++ P + + CP Sbjct: 356 ADQIEKL-----------DIRVGDEVYVEKGGEIIPKIVAVELTKRPDNSTPTVYATHCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +VR A H C +AC Q R++HF+SR A +I+G+G + + Sbjct: 405 ECHTELVRTEGD------AKHYCPNDMACPPQVKGRIEHFISRKAMDIDGIGAETVGQLV 458 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 D F I AD++ L Q ++ S N+ + I + + ER +F Sbjct: 459 ---DAGF-INNYADLYDLTVEQVLPLERM------AQKSAENMINGIEASKQVPFERVLF 508 Query: 556 SLGIRHVGAEIARSLAKYYLSYQ---NFAQEIN--------NIIAHNNDDWLSLIRVPLV 604 LGIR+VG +A+ LAK+Y + N E + ++ + + L VP + Sbjct: 509 GLGIRYVGETVAKKLAKHYKNVDALLNMPAEPDKSSIDLFADVSSAADKKMEELTAVPEI 568 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKI 661 G+ IAQ++VEF QN + +E LK E+ + + ++ K V +G + + Sbjct: 569 GESIAQSLVEFIQNEDQMAIIER-LKNTGLQFALSEEQLEGQTDKLAGKSFVISGVFE-M 626 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 R+ ++ V G S+ +S KTD +I GD G SKLEKA++LG+ +++E++FL ++ Sbjct: 627 SRNDLKKLVEDNGGKNSSSISSKTDYLIRGDKMGPSKLEKAEKLGITMISEQEFLAMI 684 >gi|258645494|ref|ZP_05732963.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470] gi|260402847|gb|EEW96394.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470] Length = 669 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 223/704 (31%), Positives = 371/704 (52%), Gaps = 58/704 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K+ L +++ YH YY KP I D E+D L R + +P++ P+ P ++ Sbjct: 8 KKAEELRKKLRYHSYLYYVLDKPEITDFEFDRLYRSLVDLEKEYPEIVT---PDSPTQRV 64 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG+ + K+ P LSL ++ E+LR F R++ + + E KIDG Sbjct: 65 GGKASDDFRKIPFKKPMLSLANAFSAEELRDFDRRVHGGIGAM---PVEYITELKIDGLS 121 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + YE G + RGDG GEDV++ ++ I TIP + N P +EVRGEVY+ + F Sbjct: 122 MNLIYENGSLMQGLTRGDGKVGEDVTSNVKTIKTIPLYIE-NAPAYMEVRGEVYMPRKSF 180 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEM 257 +ALN+E G P+AN RNAA+G LR+L+P R L+FF + LG + Q ++ Sbjct: 181 IALNEERDEAGMMPFANCRNAAAGSLRQLDPKVTAARNLDFFAYALGAEEGLDISSQDDL 240 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L +++ F VN R+ ++ G+++ E + R L YD DG+V KV++F Q+ LG Sbjct: 241 LLQLKKFHFRVNPHYRKWDSIEGVITGVREWEKKRRELDYDTDGMVIKVNDFRQQELLGA 300 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + P+W I++K+ ++A T++ I + +GRTG+LTP A L PV + G + ATLHN D Sbjct: 301 TGKDPKWAIAYKYPPEEAVTKIEKIVVSMGRTGVLTPSADLTPVRLAGTTVKRATLHNLD 360 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 +I+ +DIR GD V++ +AGE+IP++ ++ +R+ + F P CP+C Sbjct: 361 FIR-----------EKDIREGDTVIIYKAGEIIPEIAAVLKEKRNGSEKEFEMPENCPVC 409 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + +R ++ + AA RC AC E+L HF SRDA +IEGLG +D Sbjct: 410 GNS-IRRIDTE-----AAFRCINP-ACGGVVREKLIHFASRDAMDIEGLGPAVVDSL--- 459 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + R+ AD ++ +IE + G+ S NL +I + L + +F L Sbjct: 460 ----LAYRLVADAADFYALKEDDLRQIERM---GEKSAANLITAIRASKERGLAKLLFGL 512 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR +G E LA +Y I+ I+A D ++ +G I A+++ +++ Sbjct: 513 GIRFLG-EKGSELAAHYF------HTIDAIMAA---DVETIEETEGIGKITAKSLYDYFH 562 Query: 618 NPRNICAVE------ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + +NI + L++E+ E++ S + +V TG L + R +A E + Sbjct: 563 DEKNIEMINKLKNAGVLMEEI------KEESESGMFSGESVVLTGKLAVMGRREASELIK 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +LG + ++ T +++ G++ GSKLEKA+ G+ +++E++FL Sbjct: 617 RLGGTTQSSVTNITTLVVAGEDAGSKLEKARAKGIPVIDEQEFL 660 >gi|300781381|ref|ZP_07091235.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC 33030] gi|300533088|gb|EFK54149.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC 33030] Length = 674 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 230/713 (32%), Positives = 371/713 (52%), Gaps = 49/713 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 EA E ++ + L +E+ H D YY P+I D+E+D + RR + P+LA Sbjct: 3 EAQVSEDLLRQWNELAKEVRRHRDLYYN-GDPVITDAEFDEMFRRLQQLEEDHPELAV-- 59 Query: 70 DPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P ++G + F+ V H P +SL+ +++ E+L ++T+ + Sbjct: 60 -PDSPTKEVGAAPTSTAFEDVEHLEPMMSLDNVFSAEELSDWLTK----------TPGPY 108 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 E KIDG I + YE G+ AA RGDG GE+++A R I IP L+ + P ++EVR Sbjct: 109 LTELKIDGVSIDLVYENGQLTRAATRGDGRVGENITANARVIDDIPHELTGDFPALLEVR 168 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247 GEV+I DF LN+ G KP+ANPRN A+G LR+ +P + R L HG+G Sbjct: 169 GEVFIRPEDFPELNELRQKEGGKPFANPRNTAAGGLRQKDPEKVRNRKLRMICHGIGARE 228 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Q++ +K+ G PV+ ++A T + R +++DGLV KVD Sbjct: 229 GVEFSSQHDAYEKLAAWGLPVSEYTKRAETAEEVQKTVEYWADHRHDAIHEMDGLVIKVD 288 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + Q+QLG +R+PRW I++K+ ++ +T+L DI + +GRTG TP A LEPV + G+ Sbjct: 289 DLAAQRQLGFTSRAPRWAIAYKYPPEEVTTKLKDIAVSVGRTGRATPFAVLEPVFVSGST 348 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN+ +K R G + +GD V+V++AGE+IP+V+ + + R + Sbjct: 349 VSMATLHNQHEVK---------RKG--VLIGDTVVVRKAGEIIPEVLGPVADLRDGTEKE 397 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C +++ K G A RC +C AQ +RL++ SR AF+IE LG Sbjct: 398 FVFPENCPVCGTKLA---PAKEGD--ADWRCPNTRSCPAQLGQRLEYLASRGAFDIEALG 452 Query: 488 KQQLDFFFKSEDPAFSIRI-PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ S + I D+FTL ++ G + S L ++ + + Sbjct: 453 EKGAQDLIAS-----GVLIDEGDLFTLTESDLEKSSVYTTKAGTVNASGKKLLANLEQAK 507 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L R + +L IRHVG AR+LA Y S + ++ + DD L VG Sbjct: 508 EKELWRVLVALSIRHVGPTAARALASRYGS-------MGKLLDASVDD---LADTDGVGG 557 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IIA++ E+++ + V ++ ++ +E +V TG+L+ R A Sbjct: 558 IIAESFKEWFEVEWHRDIVRK-WGAAGVNMEDEASDLEQTLEGLTVVVTGSLENFSRDGA 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + G + +S+KTD ++VG+N GSK KA+ LG+ I++E+QF LL+ Sbjct: 617 KEAILSRGGKAAGSVSKKTDYVVVGENAGSKETKARDLGITILDEDQFRTLLE 669 >gi|39938924|ref|NP_950690.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M] gi|81402396|sp|Q6YQD6|DNLJ_ONYPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|39722033|dbj|BAD04523.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M] Length = 671 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 224/700 (32%), Positives = 376/700 (53%), Gaps = 50/700 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ SL ++++ + YY S P + D +YDAL + + +P P P K Sbjct: 8 KQKIKSLVKQLTKANYQYYNLSNPDLSDQQYDALLKELINLETRYPQFKL---PYSPTLK 64 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 IGG + + H P +SL ++N+E+++ F RI K + E KIDG Sbjct: 65 IGGFVEKKFSTIKHKTPMMSLGNVFNLEEIKAFYDRIV-----KKIPTFSLLTELKIDGV 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I+++Y+KG V A RG+G GED++ + I TIP L ++ +EVRGE+Y+S Sbjct: 120 AISLKYQKGILVQALTRGNGIWGEDITKNAQTIKTIPLRLKEDLD--LEVRGEIYLSHPA 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F LN + + ++NPRNAASG LR+LN + R L+ FV+G+ + Q E Sbjct: 178 FEKLNAQRKQENKPLFSNPRNAASGTLRQLNSAIVAQRNLSIFVYGISD-PYLTKPTQKE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + LGF N + F ++S + K+I+ L YD DG+V K++E + +G Sbjct: 237 TLVFLTALGFTTNPHYYCVSNFENLLSVIEKYKTIKEQLTYDTDGIVIKINELAFHSLIG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A++PRW ++KFA + + + +I Q+GRTG++TPV ++ PV + G+L++ LHN Sbjct: 297 ATAKAPRWATAYKFATITSQSIVQNIIFQVGRTGVITPVCKIMPVMVDGSLVSKVVLHNY 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI +DIR+ D V+V +AG VIP+++++I ++R +P CP Sbjct: 357 DYI-----------CKKDIRIKDHVIVHKAGSVIPEILEVIKSKRTDLQKPTLMIEKCPA 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQ+ L + G++ + C C Q++++L HFVS++A +I LG+Q + FF Sbjct: 406 CQTI----LEKQPGEV--DYFCLNP-NCREQKIQKLIHFVSKNAMDINVLGEQTIIAFFD 458 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I P+D++ L++ + ++ + GFG +TN+ D+I + E +F+ Sbjct: 459 KN----LIAKPSDLYLLKKHKHI----LQEMPGFGAKKITNILDAIEASKQKGFEDVLFA 510 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI+H+G ++++ LAK++ + +N Q +I + +G IAQ+I +++ Sbjct: 511 LGIKHIGKKVSQVLAKHFQTIENLQQATPELITQIRE----------IGIKIAQSIQQYF 560 Query: 617 QNPRNICAVEAL--LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 N N+ V L L S + NKK+V TGTLQK R + Q+ + Q+G Sbjct: 561 SNSCNLEEVSKLKTLGVSFQSTNPQNPTTQTIFTNKKIVLTGTLQKYSRLQIQQILEQMG 620 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 A+++ LS + + +IVG N GSKL KAQ+L + I+ E++ Sbjct: 621 AIITNSLSLQNNYLIVGINAGSKLTKAQKLQIPIIEEKEL 660 >gi|197294788|ref|YP_001799329.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense] gi|254781387|sp|B1VAY1|DNLJ_PHYAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171854115|emb|CAM12104.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense] Length = 670 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 229/700 (32%), Positives = 389/700 (55%), Gaps = 60/700 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE+ K+L++ E +Y YY S P + D +YDAL + + FP P Sbjct: 7 IEKKIKDLTNQLNEANYE---YYVKSNPKLTDQQYDALLKELLVLEKKFPQFTL---PYS 60 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P KIGG + V H+ +SL +N+++L+ F RI + + +S E K Sbjct: 61 PTLKIGGFVEKKFSTVKHTSAMMSLANAFNLKELKAFYDRIAKKF-----SSFSMVSELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y+KG A RG+G GE+++ ++ I +P L L P +EVRGE+Y+ Sbjct: 116 IDGVAVSLKYKKGILFQALTRGNGVWGEEITKNVQTIKQVP--LKLTQPLDLEVRGEIYL 173 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 S + F LN + + ++NPRNAASG +R+LN + + R L+ F++ + + + Sbjct: 174 SNSSFQKLNQQRKIAQQPLFSNPRNAASGTIRQLNSSIVAQRNLSIFIYSI-QNPYLLKS 232 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L + LGF VN + +++F + E++ ++ L Y+ DG+V K++E +L Sbjct: 233 TQEETLTFLASLGFSVNPYYKCSSSFEELEIKIQELEKLQQNLDYNTDGVVVKINELNLH 292 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +G+ +SP+W I++KFA K + + + +I Q+GR+G+LTPV ++ PV + G+L++ Sbjct: 293 DSIGKTTKSPKWAIAYKFATKNSESVVQEIIFQVGRSGMLTPVCKIIPVMVDGSLVSKVV 352 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DYI +DIR+ D V V +AG VIP++ ++I ++R D++PF+ + Sbjct: 353 LHNYDYI-----------CKKDIRLKDYVQVHKAGSVIPEIKEVIKSKRPSDSKPFAMIT 401 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S LN G++ + C C Q++++L HFVS++A +I+ LG Q L Sbjct: 402 QCPSCHSL----LNKNKGEV--DYFCINK-NCLEQKIQKLIHFVSKNAMDIDTLGNQTLI 454 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FF + I P+DI+ L+ ++ I GFG V N+ S+ K +N SLE Sbjct: 455 TFFNQK----LIENPSDIYLLKNNLDV----LQKINGFGAKKVQNILTSVEKSKNKSLEN 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR-VPLVGDIIAQA 611 +F LGI+HVG ++++ L K++ S + I+ + L I+ +P +G+ IA + Sbjct: 507 VLFGLGIKHVGLKVSQVLTKHFDSIE--------ILQKTTLENLESIKSIPEIGEKIALS 558 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE------NKKLVFTGTLQKIQRHK 665 + +++QNP ++ + LK++ S + +S+I+ NKK+V TG+LQ R + Sbjct: 559 LQKYFQNPLHLEEITK-LKQLGVSF---KSTTTSQIKAPNFFTNKKVVLTGSLQNYTRSQ 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 ++ + Q GA+++ LS +T ++I G NPGSKL+KA+ L Sbjct: 615 IKKLLIQKGAIINDALSSQTHLLITGANPGSKLQKAKTLN 654 >gi|261380488|ref|ZP_05985061.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703] gi|284796739|gb|EFC52086.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703] Length = 822 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 261/812 (32%), Positives = 403/812 (49%), Gaps = 160/812 (19%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L P+ P ++GGE +V H +P Sbjct: 22 YYTLDAPSVPDAEYDKLFRELEALELNHPELKL---PDSPTQRVGGEPLAGFDEVRHEVP 78 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F ++ + + +EPK DG I++ Y G Sbjct: 79 MLSLTNAFSPQDENGVFDHAEMYAFDERVRGGLNGEKPEYVIEPKFDGLAISLLYRDGVL 138 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 AA RGDG +GEDV+ ++ + IP R+ NIPE+IE+RGEV + K DF ALN Sbjct: 139 TQAATRGDGTTGEDVTQNVKTVSNIPLRLYGENIPELIEIRGEVLMLKADFAALNARQAE 198 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 199 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGFIAEEHLQELGYCKEL 257 Query: 265 GFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 GF + +G + ++++Y +M+ R TLPY+IDG+V KV+ + Q++LG +R+PR Sbjct: 258 GFSLPDGNFGCFPNINEVLAFYEQMQQKRPTLPYEIDGMVVKVNSLAQQRELGFISRAPR 317 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W I+HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D Sbjct: 318 WAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD------ 371 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------------- 421 +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 372 ---EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQESNISVSDGLQDDLFAETP 426 Query: 422 -----HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 P +P+ P+ CPIC S + R+ G+ VA RC+GG+ C AQ+ + L HF Sbjct: 427 SETRAEPLHKPYRLPTHCPICHSEIERE----EGEAVA--RCSGGMLCQAQRAQGLIHFA 480 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPA--FSIRIPADIFTLQRRQQT-----------STTK 523 SR A +I+GLG++Q++ ++D F+ DI TLQ+ ++T S ++ Sbjct: 481 SRKAMDIDGLGQKQIEQLV-TQDLVRHFADLYRLDIPTLQKMKETADKASVNEEEPSNSE 539 Query: 524 IE---NILGFGDVSVT----------NLYDSINKRRNISLERFIFSLGI----------- 559 IE N G +S T N+ I + L RF+F+LGI Sbjct: 540 IEDFENESGNALLSKTSKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTL 599 Query: 560 ----------RH-----------VGAEIARSLAKYY----------------LSYQNFAQ 582 RH +G +A S+A ++ ++ Q+ A Sbjct: 600 AQAFGTLGNVRHAPEPILACLPDIGTVVAHSIAHFFAQEAQQAMIDELLAVGVALQSQAV 659 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE---------------------FYQNPRN 621 I + W++ + + + A A+ E + P+N Sbjct: 660 TIPPLRHAEPQRWIARLPDFKISETKALALWELAGQSIEGLQSDKALPADWQTWRSKPQN 719 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 +E + + ++ + + S+ I K V TGTL ++R +AQ + G Sbjct: 720 AALLENMKTFFAQTLSKLQDETISDGINETIAGKTFVLTGTLPTLKRDQAQAMIEAAGGK 779 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 VS +S+KTD ++ G+ GSKLEKAQ LGV + Sbjct: 780 VSGSVSKKTDYVVAGEAAGSKLEKAQTLGVAV 811 >gi|312140511|ref|YP_004007847.1| DNA ligase (nad+) liga [Rhodococcus equi 103S] gi|311889850|emb|CBH49167.1| DNA ligase (NAD+) LigA [Rhodococcus equi 103S] Length = 712 Score = 366 bits (940), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 239/732 (32%), Positives = 369/732 (50%), Gaps = 57/732 (7%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 +++P A + R+ L + + H YY PI+ D E+D L +A+ PD Sbjct: 17 EVVPASA----EDRERWQELAEVVRNHQFRYYVLDSPIVSDGEFDQLFGELNALEERHPD 72 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L P+ P +GG V H LSL+ +++ ++LR +I RI + D Sbjct: 73 L---RTPDSPTQLVGGGFATEFKAVDHLERMLSLDNVFDYDELRTWIGRIEA--EVSDGR 127 Query: 125 S---------IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175 S + + E KIDG + + YE G+ V AA RGDG +GEDV+ R I IP Sbjct: 128 SAGSAAAHPDLHYLCEVKIDGVALNLVYENGRLVRAATRGDGRTGEDVTLNARTISDIPE 187 Query: 176 VLSLN----IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT- 230 L+ + IP ++EVRGEV+ DF ALN ++A G+ P+ANPRN+A+G LR+ NP Sbjct: 188 TLTPSDEYPIPALLEVRGEVFFRLEDFAALNASLVADGKAPFANPRNSAAGSLRQKNPAV 247 Query: 231 DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290 R L HGLG+T GQY+ + G PV+ + +V Sbjct: 248 TARRRLGMICHGLGRTEGFDPAGQYDAYTALAAWGLPVSTHTSRVVGADAVVEKVKYWDE 307 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R + ++IDGLV KVDE SL ++LG +R+PRW +++K+ ++A+T+L+DI + +GRTG Sbjct: 308 HRHDVEHEIDGLVVKVDEMSLHRRLGATSRAPRWAVAYKYPPEEATTKLVDIRVSVGRTG 367 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TP A +EPV + G+ + ATLHN +K R G + +GD V++++AGEVI Sbjct: 368 RVTPFAYMEPVLVAGSTVALATLHNASEVK---------RKG--VLIGDTVVIRKAGEVI 416 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+V+ +V+ R + F P+ CP C + + K G A RC +C AQ E Sbjct: 417 PEVLGPVVDVRDGSEREFVMPTECPECGTTLA---PAKEGD--ADIRCPNQRSCPAQLRE 471 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 R+ H R AF+IE LG + + A I D+F+L G Sbjct: 472 RVFHVAGRGAFDIEVLGYEAATALLQ----AGVISDEGDLFSLTEDDLLEAPLFRTKAGK 527 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + L D++ + L R + +L IRHVG AR+LA + S + Sbjct: 528 LSANGRRLLDNLGSAKQQPLWRVLVALSIRHVGPTAARALASEFGSLERI---------- 577 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N L V VG IA A+V +++ R+I A + V+ R E +++ +E Sbjct: 578 ENAGVEELAAVDGVGGTIAAAVVAWFEVDWHRDIVA-KWRAAGVTMEDERDE-SIARNLE 635 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 +V TG+L+ R +A+E + G + +S+KT +++G+ PGSK KA++LGV I Sbjct: 636 GLSIVVTGSLEGFSRDEAKEAILVRGGKAAGSVSKKTAFVVIGEAPGSKAAKAEELGVPI 695 Query: 709 MNEEQFLFLLQQ 720 ++E+ F LL+ Sbjct: 696 LDEDGFRRLLEH 707 >gi|288927843|ref|ZP_06421690.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str. F0108] gi|288330677|gb|EFC69261.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str. F0108] Length = 665 Score = 366 bits (939), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 232/716 (32%), Positives = 379/716 (52%), Gaps = 70/716 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L +++ +H+ YY + P + D E+D L R + P++ DPN P ++ Sbjct: 5 KRIEELREQLHHHNYLYYVQNSPTLSDQEFDRLMRELQDLEAKHPEVY---DPNSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL--EPKIDG 136 G +++ +V H LSL +N +++ + + KD F + E K DG Sbjct: 62 GSDLSTGFTQVKHKYAMLSLANTYNEQEVASWYATV-----SKDLGGQPFEVCCELKYDG 116 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195 I++ YE+G+ V A RGDG G+DV+A +R I IP VL P E+RGE+ + Sbjct: 117 LSISLTYEQGRLVRAVTRGDGEQGDDVTANVRTIRAIPLVLPGTGYPNEFEIRGEILMPW 176 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 F LN ++ G ANPRNAA G L+ +P + R L+ +++ L ++ + G Sbjct: 177 KVFEQLNVKLEKAGETLLANPRNAAVGALKSHDPRLVAKRKLDAYLYYL-LGDDLPSDGH 235 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE L+ GF V+ G+ +A + I + N + R LP DG+V KV+ Q+Q Sbjct: 236 YENLKAAETWGFKVSQGMHKATSLEQIYEFINHWDTARHDLPVATDGIVLKVNSLRQQQQ 295 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++ TRL ++ Q+GRTG +TPVA +EPV + G + ATL+ Sbjct: 296 LGFTAKSPRWAIAYKFKAERVCTRLNEVTFQVGRTGAVTPVANMEPVLLAGTTVKRATLN 355 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED+I+ L D+ +GD V V++ GE+IPK+V + V+ R P+ QP F S C Sbjct: 356 NEDFIRSL-----------DLHIGDNVFVEKGGEIIPKIVGVDVSHRSPNLQPVHFISNC 404 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S +VR G+ AA+ C C Q R++HF++R A NI+ +G + +D + Sbjct: 405 PECGSPLVR----YAGE--AAYYCPNDTGCPPQIKGRIEHFIARKAMNIDSIGPETVDDY 458 Query: 495 FKSEDPAFSIRIPADIFTLQRRQ-------QTSTTKIENILGFGDVSVTNLYDSINKRRN 547 F+ +R AD++ ++ Q Q S KI V + DS+ + Sbjct: 459 FRRG----IVRNVADLYEIRTEQINGDGTRQKSAQKI----------VKGIQDSV----S 500 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 ER +F+LGIR VG A+ LAK++ S I+ ++ + L+ V VG + Sbjct: 501 TPFERVLFALGIRFVGETTAKLLAKHFKS-------IDALMVATPE---QLVEVEGVGTV 550 Query: 608 IAQAIVEFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 IA+++V F+ + N+ +E L + ++S S+ + + S ++ K +V +G ++ R Sbjct: 551 IAESVVRFFHDEVNLNIIERLRQYGLQMSQSVDQQQP-ASEKLAGKNIVISGVFEQHSRD 609 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +E + + G + +S KT I+ G N G SK++KAQQLG+ +++E FL +L+ Sbjct: 610 EYKEMIERNGGKNVSSISSKTSFILAGANMGPSKMQKAQQLGIDMIDESAFLKMLE 665 >gi|320105506|ref|YP_004181096.1| NAD-dependent DNA ligase [Terriglobus saanensis SP1PR4] gi|319924027|gb|ADV81102.1| DNA ligase, NAD-dependent [Terriglobus saanensis SP1PR4] Length = 694 Score = 366 bits (939), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 241/727 (33%), Positives = 377/727 (51%), Gaps = 70/727 (9%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 S L EI +H+ YY KP I D++YDAL A+ P+L P P ++GG+ Sbjct: 8 SELRAEIEHHEHAYYVLDKPEISDAQYDALVNLLKALETEHPELV---TPESPTQRVGGK 64 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 KV HS P LSL+ +N +LR + R+ D ++ +T E K+DG + + Sbjct: 65 PREGFAKVAHSRPMLSLDNAYNEAELRAWAERVTTSLPASD--AVEYTCEYKLDGLSLAL 122 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP------RVLSLNIPEIIEVRGEVYISK 195 YE G+ V RGDG GEDV++ +R I ++P ++ + +P EVRGEV + + Sbjct: 123 HYENGQLVRGVTRGDGSVGEDVTSNVRTIRSVPLRIAAAKLKAAGLPGTFEVRGEVVMPQ 182 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 + F LN + A G+ ANPRNAA+G +R + P+ + R L+F+ + L + + K Q Sbjct: 183 SAFEELNRQREAAGQAAAANPRNAAAGTIRTIEPSIVAQRRLDFYAYFLLRDGDTLLKSQ 242 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 L +R GF VN R T ++ + + ++ R L Y+IDG+V KV+ +LQK+ Sbjct: 243 QATLDALRATGFRVNAQARTVGTIDEVLGFIAQAEAERDGLGYEIDGVVIKVNATALQKR 302 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++PRW I++KF + T+L + Q+GRTG LTPVA L+P+ IGG +T ATLH Sbjct: 303 LGFTGKAPRWAIAYKFPARAGVTQLRGVIFQVGRTGKLTPVADLQPIFIGGTTVTRATLH 362 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSF 433 N D I+ L +++GD V V+R G+VIPK+ ++ ++ H + FP+ Sbjct: 363 NADEIERL-----------GLKIGDHVSVERGGDVIPKITHVVEDKIHARGTEEIVFPTV 411 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C VVR+ + V A +C A+ E L+HF SR NIEGLG+ + Sbjct: 412 CPRCGEPVVREEGEVDWRCVNA-------SCPARLEEELRHFASRGVMNIEGLGESLVAQ 464 Query: 494 FFK--------------------SEDPAFS--IRIPADIFTLQRRQQTSTTKIENILGFG 531 +E P + ADI+ L Q +I G Sbjct: 465 LLGHTVAEAVDATAGVGEGEESVAEAPTREALVHSVADIYGLTLEQLMGLERI------G 518 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 S +L I K ++ L R + LGIRHVG A++LA+ + S ++ +I+ Sbjct: 519 QKSAESLLAEIEKSKSAPLSRVLLGLGIRHVGERTAQTLAEEFGS-------MDALISAT 571 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 +D L RV VG +A+AI E++ N +N+ V+ LK+ ++ ++ +++ Sbjct: 572 EED---LTRVNDVGPKVAEAIREWFANEKNLLLVQR-LKDAGLTMTAEKRERGTQLAGMT 627 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 V TGTL + R A+E + G VS +S+KT ++ G++ GSKLEKA++LG+ +++E Sbjct: 628 FVLTGTLPTLTRDTAKEKIEAAGGKVSGSVSKKTTYVVAGEDAGSKLEKARELGIAVLDE 687 Query: 712 EQFLFLL 718 L +L Sbjct: 688 AGLLEML 694 >gi|299139723|ref|ZP_07032896.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8] gi|298598347|gb|EFI54512.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8] Length = 723 Score = 366 bits (939), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 252/760 (33%), Positives = 387/760 (50%), Gaps = 92/760 (12%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ALS +Q ++ +L +++ +H+ YY P + D++YDA + P+L Sbjct: 5 PSNALSPDQ---QIEALREDLRHHEHLYYVLDAPELTDAQYDARMNELRRLETEHPELV- 60 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++GG+ KV HS P LSL+ +N +LR + R+ + + Sbjct: 61 --TPDSPTQRVGGKPKEGFAKVAHSRPMLSLDNAYNEAELRAWAERVVSGLPSGE--VVR 116 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAAL-----RGDGHSGEDVSACIRAIPTIP------RV 176 F E K+DG + ++Y+ G A L RG+G GEDV+ +R I ++P ++ Sbjct: 117 FVCELKLDGLSLALQYDAGAKHEAVLKTGVTRGNGTIGEDVTTNVRTIRSVPLHIQAAKL 176 Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235 +P+ EVRGEV + + F +N E A G P ANPRNAA+G +R L P + R Sbjct: 177 AKAGLPQQFEVRGEVVLPQKAFEKMNAEREAAGLAPAANPRNAAAGTIRTLEPNIVAQRR 236 Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 L FF + L + E Q LQ +R GF VN R + ++++ NE + +R L Sbjct: 237 LEFFAYFLLREGEPLLAEQSSALQALREAGFLVNKHARTVGSIDEVLAFINEAEPLRDGL 296 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 PY+IDG+V KVD + Q++LG ++PRW I++KF + A TRL D+ Q+GRTG +TPV Sbjct: 297 PYEIDGVVIKVDAIAQQRRLGFTGKAPRWAIAYKFPARAAVTRLDDVLFQVGRTGKVTPV 356 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A L PV IGG +T ATLHN D I L +RVGD V V+R G+VIPK+ + Sbjct: 357 AALAPVFIGGTTVTRATLHNADEIARL-----------GVRVGDFVSVERGGDVIPKITE 405 Query: 416 IIVNERHP-DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 ++ + +HP FPS CP+C S +VR G++ RC + C A+ E L H Sbjct: 406 VVEDAKHPRGTSEIIFPSHCPVCGSELVR----AEGEV--DWRCINAV-CPARVREELLH 458 Query: 475 FVSRDAFNIEGLGKQQL-DFFFKSED------------PAFS------------------ 503 + +R NIEGLG+ + ++E+ P S Sbjct: 459 WAARGVMNIEGLGESMVAQLLGQAEEDSESAEGRSGLQPGLSESVSDEGLQTGLAEPIKT 518 Query: 504 -----IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 IR AD+++L R Q + ++ G+ + L I + + L R +F LG Sbjct: 519 SHEPLIRSIADLYSLTREQLLTLERV------GEKTADALLAEIERSKQAPLARVLFGLG 572 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IR VG A LA+++ S +++++ + +D L V VG +AQAIVEF+ Sbjct: 573 IRFVGERTASLLAEHFGS-------LDDLMKASAED---LEAVNEVGPRVAQAIVEFFAE 622 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 +N VE L+ V + ++ V + V TGTL + R +A++ + G VS Sbjct: 623 EKNRELVEK-LRTVGLTFTAEKRVVGTTFAGLTFVLTGTLPTLTRDEAKQRIEDAGGKVS 681 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S+KT ++ G++ GSKLEKAQQLGV +++E L L+ Sbjct: 682 GSVSKKTSYVVAGEDAGSKLEKAQQLGVAVLDEAGLLALI 721 >gi|331703733|ref|YP_004400420.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802288|emb|CBW54442.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 668 Score = 366 bits (939), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 236/712 (33%), Positives = 396/712 (55%), Gaps = 52/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++A ++ L+++++ YY P + D EYD + ++ +P+L S+ P Sbjct: 1 MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITSDSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + K+GG ++ K+TH P LSL +++ ++ F T++ + D+ + E Sbjct: 61 S---QKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQVSKVSNTLDNQ---YVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ YE G V AA RG+G GEDV+ ++ I +IP L +N E +EVRGE+ Sbjct: 115 LKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINVKTIKSIP--LKINKKERVEVRGEI 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEI 249 Y+SK +F +N + + + NPRNAA+G LR+L+ + +R L+ F + + S Sbjct: 173 YLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSNN 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 QY+ + K+ LGF N I +Y ++ ++++ L Y IDG+V+K+++ Sbjct: 233 LT--QYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDK 290 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ LG ++ P+W I++KF + T+LLDI +GRTG +T A+LEPV + GA I+ Sbjct: 291 NLQNSLGFTSKIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATIS 350 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATL+N +YIK +D+R+ V +K+AG+VIP+V++ I +E + + F Sbjct: 351 AATLNNAEYIK-----------SKDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEKFK 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 +CP C S + ++ N C +CS + L L+HF SR+A NI LG + Sbjct: 400 PILYCPNCHSLLEKNENE------VDQFCINS-SCSMKILRSLQHFSSREAMNIVSLGDR 452 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ F I+ +DI+ L+ + +IEN FG S NL DSIN +N S Sbjct: 453 SLEILFNLN----IIKTISDIYRLEEYKD-QILEIEN---FGLKSYLNLIDSINMSKNNS 504 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LE+ +F LGIRH+G++ A+ LA+ Y Q I+N++ + D+ LI++ +G+ +A Sbjct: 505 LEKVLFGLGIRHIGSKTAKILARKY-------QNIDNLMKASYDE---LIQINSIGESLA 554 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQ 667 +I+++++ N+ + LK + + ++S+ I NK V TGTL + + Sbjct: 555 LSIIDWFRIEDNLKLINE-LKSFNINFNYLGAKINSDSIIANKSFVITGTLTRPREEFKT 613 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V+ +I S++TD ++ G+N GSKLEKA++LGV I++E+QF LL+ Sbjct: 614 LIENNAGKVIGSI-SKQTDYLLAGNNVGSKLEKAKKLGVTIIDEQQFFDLLK 664 >gi|254523079|ref|ZP_05135134.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14] gi|219720670|gb|EED39195.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14] Length = 821 Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 196/497 (39%), Positives = 299/497 (60%), Gaps = 30/497 (6%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++I+ + Y++ P I D +YD + R +A+ P+LAR++ P ++G + Sbjct: 12 LRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPT---QQVGARPS 68 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 +V H++P LSL ++ E++ F+ RI ++ S+ F+ EPK+DG I++RY Sbjct: 69 GRFPEVRHAVPMLSLSNAFSDEEVADFVRRID---ERLGRRSLQFSAEPKMDGLAISLRY 125 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALN 202 E+G FV A RGDG +GEDV+A +R I IP R+ + P+++EVRGEVY+++ DF A N Sbjct: 126 EEGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGEVYMARADFEAYN 185 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT-SEIFAKGQYEMLQK 260 + G K ANPRNAA+G LR+L+P R L+FF +G G+ L + Sbjct: 186 ERARQQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHSGTLAQ 245 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + GFPV+ + G++ YY ++ R LP+DIDG+VYK+D+ + Q+ +G +R Sbjct: 246 LGAWGFPVSGLCKVVEGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSR 305 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PRW I+HKF ++ ST + I+IQIGRTG TPVARL PV + G +++NATLHN D I Sbjct: 306 APRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIA 365 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 L D+RVGD V+V+RAG+VIP+VV +I++ R P P+ P+ CP+C S Sbjct: 366 RL-----------DVRVGDSVIVRRAGDVIPEVVSVILDRRPPGTTPWQMPTRCPVCGSE 414 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 +VR+ + AA RC+G L+C AQ+ E + HF SR A +I+GLG D + ++ Sbjct: 415 IVRE------EGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLG----DKYIETLVD 464 Query: 501 AFSIRIPADIFTLQRRQ 517 A ++ AD++ L R Q Sbjct: 465 AGIVKSVADLYRLNRDQ 481 Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 51/80 (63%) Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 V+ ++ + +V TGTL ++ R A+E + LGA VS +S+KT ++ G GSKL+KAQ Sbjct: 742 VAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSVSKKTSFVVAGAEAGSKLDKAQ 801 Query: 703 QLGVKIMNEEQFLFLLQQYN 722 LGV + +E++ L L ++ Sbjct: 802 SLGVPVWDEDRLLAYLAEHE 821 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 10/94 (10%) Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL +I+ R +LER +F+LGI HVG A++LA+++ + +I H W Sbjct: 552 NLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLE--------LIRHLP--WP 601 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 RVP +G +A+++ F++ N A++ LLK Sbjct: 602 LFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLK 635 >gi|313674932|ref|YP_004052928.1| DNA ligase, nad-dependent [Marivirga tractuosa DSM 4126] gi|312941630|gb|ADR20820.1| DNA ligase, NAD-dependent [Marivirga tractuosa DSM 4126] Length = 671 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 223/712 (31%), Positives = 374/712 (52%), Gaps = 55/712 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A +++ L +++ Y++ YYQ S I D E+D + + + FPDL S+ P+ Sbjct: 6 AEQKIQELSEKLHYYNYKYYQESVSEISDYEFDMMLKELIELEEKFPDLKTSDSPS---Q 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ + V H IP LSL ++ E+L F R+ R + S + E K DG Sbjct: 63 RVGGDITKNFETVEHKIPMLSLGNTYSKEELDDFDGRVKRGL---GEESYEYFCELKFDG 119 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 I++ YE GK + RGDG G+D++ + I TIP +V PE E RGEV++ + Sbjct: 120 VAISLHYENGKLIRGVTRGDGSKGDDITNNAKTIRTIPLKVRGEQFPEYFEARGEVFLPR 179 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 F +N E G ANPRNAASG L+ + + R L+ F++ ++ Sbjct: 180 EAFNEINREREENGEALLANPRNAASGTLKMQDSGVVAKRKLDCFLYSYA-GEDLPIDSH 238 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E ++++ GF V+ ++ + + ++ NE + R +LP D DG+V KV+ Q+Q Sbjct: 239 EEGIKQLEKFGFNVSQTYKKCKNINEVFNFINEWEEKRHSLPVDTDGIVIKVNSLGQQEQ 298 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++K+ + ++T L +I Q+GRTG +TPVA LEPV++ G + A+LH Sbjct: 299 LGFTAKSPRWAIAYKYKAESSTTILKEITYQVGRTGAVTPVANLEPVSLAGTTVKRASLH 358 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N + I L D+RVGD V V++ GE+IPK+ + + +R + + C Sbjct: 359 NANEIARL-----------DLRVGDTVHVEKGGEIIPKITGVDLTKRDLGSNEVEYIQEC 407 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + +VR + A H C C Q ++H++ R A +I+ +G++ + Sbjct: 408 PECGTELVR------AEGEAVHYCPNKKGCPPQIKGSIEHYIQRKAADIDSMGERTIHLL 461 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ ++ AD++ L+ + + GF D+S NL I + + I E + Sbjct: 462 YEK----GLVKNVADLYDLKYED------VFELEGFKDLSTQNLLKGIEESKQIPFENIL 511 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIR VG +A L ++ + N A+ + LI VP +G+ IAQ++VE Sbjct: 512 FGLGIRFVGKTVAEKLGAHFKNIDNLAKA----------SFDELIEVPEIGERIAQSVVE 561 Query: 615 FYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++ + NI +E L E+ ++ + NV +ENK LV +G + R + +E Sbjct: 562 YFHDEDNIKLIERLKSAGLQFEIQETVIEQKGNV---LENKSLVVSGVFEHYGRDEIKEV 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 + Q G V + +S K DI++ G+N G +KL+KA++LGVKI++E +F L+++ Sbjct: 619 IKQYGGKVVSAISGKVDILVAGENMGPAKLQKAEKLGVKIIDEVEFRSLIKE 670 >gi|306831054|ref|ZP_07464215.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426620|gb|EFM29731.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 652 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 236/704 (33%), Positives = 372/704 (52%), Gaps = 69/704 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L E++ + YY +P + DSEYD L R + A P+L PN P + Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L +F R+ K + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHETPLYSLQDAFSREELEEFDRRV-----KAEFPNASYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L+ P I VRGE Y+ K Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLAQ--PLNITVRGEAYLPKAS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255 F +N+E G+ +ANPRNAA+G LR+LN + + F + TS Q Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLYQEVASTS---MTTQN 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L+++ GF VN ++ I + E+ + R LPYDIDG+V KV+ ++Q++L Sbjct: 229 DVLEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPSFC 434 DYI +DIR+GD V+V +AG++IP V+ ++ ++R D Q P P C Sbjct: 349 VDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKR--DKQVPMPIPESC 395 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S ++ + A RC L C +Q ERL HF SRDA NI GLG + Sbjct: 396 PSCGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKL 448 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLE 551 FK+E + ADI+ L +E++L GF + S LY++I + S + Sbjct: 449 FKAE----LVHDVADIYQL---------TVEDLLSLDGFKEKSAEKLYNAIQVSKENSAD 495 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIRHVGA+ +R L + + + I+ ++A + D S+ + +G +IA + Sbjct: 496 KLLFGLGIRHVGAKASRQLLEVF-------ETIDQLVAADAD---SIASIDGLGTVIANS 545 Query: 612 IVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQ 667 + ++ A E L LK + K VS +++ +V TG L+++ R++A+ Sbjct: 546 LRSYFAKKE---ATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAK 602 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 E + LGA V+ +S+KTDI++ G + GSKL KAQ LG+ + +E Sbjct: 603 EKLQDLGAKVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDE 646 >gi|325675870|ref|ZP_08155554.1| DNA ligase [Rhodococcus equi ATCC 33707] gi|325553841|gb|EGD23519.1| DNA ligase [Rhodococcus equi ATCC 33707] Length = 711 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 239/729 (32%), Positives = 366/729 (50%), Gaps = 52/729 (7%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 +++P A + R+ L + + H YY PI+ D E+D L +A+ PD Sbjct: 17 EVVPASA----EDRERWQELAEVVRNHQFRYYVLDSPIVSDGEFDQLFGELNALEERHPD 72 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY------RFW 118 L P+ P +GG V H LSL+ +++ ++LR +I RI R Sbjct: 73 L---RTPDSPTQLVGGGFATEFKAVDHLERMLSLDNVFDYDELRTWIGRIEAEVSDGRSA 129 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + + E KIDG + + YE G+ V AA RGDG +GEDV+ R I IP L+ Sbjct: 130 GSAAHPDLHYLCEVKIDGVALNLVYENGRLVRAATRGDGRTGEDVTLNARTISDIPETLT 189 Query: 179 LN----IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DIT 233 + IP ++EVRGEV+ DF ALN ++A G+ P+ANPRN+A+G LR+ NP Sbjct: 190 PSDEYPIPALLEVRGEVFFRLEDFAALNASLVADGKAPFANPRNSAAGSLRQKNPAVTAR 249 Query: 234 RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 R L HGLG+T GQY+ + G PV+ + +V R Sbjct: 250 RRLGMICHGLGRTEGFDPVGQYDAYTALAAWGLPVSTHTSRVVGADAVVEKVKYWDEHRH 309 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + ++IDGLV KVDE SL ++LG +R+PRW +++K+ ++A+T+L+DI + +GRTG +T Sbjct: 310 DVEHEIDGLVVKVDEMSLHRRLGATSRAPRWAVAYKYPPEEATTKLVDIRVSVGRTGRVT 369 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 P A +EPV + G+ + ATLHN +K R G + +GD V++++AGEVIP+V Sbjct: 370 PFAYMEPVLVAGSTVALATLHNASEVK---------RKG--VLIGDTVVIRKAGEVIPEV 418 Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 + +V+ R + F P+ CP C + + K G A RC +C AQ ER+ Sbjct: 419 LGPVVDVRDGSEREFVMPTECPECGTTLA---PAKEGD--ADIRCPNQRSCPAQLRERVF 473 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 H R AF+IE LG + + A I D+F+L G Sbjct: 474 HVAGRGAFDIEVLGYEAATALLQ----AGVISDEGDLFSLTEDDLLEAPLFRTKAGKLSA 529 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 + L D++ + L R + +L IRHVG AR+LA + S + N Sbjct: 530 NGRRLLDNLGSAKQQPLWRVLVALSIRHVGPTAARALASEFGSLERI----------ENA 579 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 L V VG IA A+V +++ R+I A + V+ R E V + +E Sbjct: 580 GVEELAAVDGVGGTIAAAVVAWFEVDWHRDIVA-KWRAAGVTMEDERDESIVRN-LEGLS 637 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +V TG+L+ R +A+E + G + +S+KT +++G+ PGSK KA++LGV I++E Sbjct: 638 IVVTGSLEGFSRDEAKEAILVRGGKAAGSVSKKTAFVVIGEAPGSKAAKAEELGVPILDE 697 Query: 712 EQFLFLLQQ 720 + F LL+ Sbjct: 698 DGFRRLLEH 706 >gi|325977951|ref|YP_004287667.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177879|emb|CBZ47923.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 652 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 236/704 (33%), Positives = 371/704 (52%), Gaps = 69/704 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L E++ + YY +P + DSEYD L R + A P+L PN P + Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ K + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRV-----KAEFPNASYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L+ P I VRGE Y+ K Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLAQ--PLNITVRGEAYLPKTS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255 F +N+E G+ +ANPRNAA+G LR+LN + + F + TS Q Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLYQEVASTS---MTTQN 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L+++ GF VN ++ I + E+ + R LPYDIDG+V KV+ ++Q++L Sbjct: 229 DVLEELSRYGFSVNPRRITTSSMTDIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPSFC 434 DYI +DIR+GD V+V +AG++IP V+ ++ ++R D Q P P C Sbjct: 349 VDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKR--DKQVPMPIPESC 395 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S ++ + A RC L C +Q ERL HF SRDA NI GLG + Sbjct: 396 PSCGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKL 448 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLE 551 FK+E + ADI+ L +E++L GF + S LY++I + S + Sbjct: 449 FKAE----LVHDVADIYQLT---------VEDLLSLDGFKEKSAEKLYNAIQVSKENSAD 495 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIRHVGA+ +R L + + + I+ ++A + D S+ + +G +IA + Sbjct: 496 KLLFGLGIRHVGAKASRQLLEVF-------ETIDQLVAADAD---SIASIDGLGTVIANS 545 Query: 612 IVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQ 667 + ++ A E L LK + K VS +++ +V TG L+++ R++A+ Sbjct: 546 LRSYFAKKE---ATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAK 602 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 E + LGA V+ +S+KTDI++ G + GSKL KAQ LG+ + +E Sbjct: 603 EKLQDLGAKVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDE 646 >gi|163841673|ref|YP_001626078.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209] gi|190359277|sp|A9WTZ3|DNLJ_RENSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|162955149|gb|ABY24664.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209] Length = 758 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 222/733 (30%), Positives = 383/733 (52%), Gaps = 61/733 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R E S L ++I ++ YY ++ ++ D+E+D L RR + I P+L ++ P + Sbjct: 33 RAEYSKLVEDIRHYRFAYYNEAESLVSDAEFDVLFRRLEEIEALHPELISNDSPT---QE 89 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFFTLEP 132 +GGE++ + V H+ SLE +++IE+L+ +I + +K + + + E Sbjct: 90 VGGEVSAAFTPVQHTSQIYSLEDVFSIEELQSWIIKAQANAEKLAGSIVAERPLRWLTEL 149 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191 KIDG + + Y G+ V AA RGDG +GED++ + I IPR L N+PE +E+RGEV Sbjct: 150 KIDGLAVNLLYRNGQLVRAATRGDGITGEDITHNVLTIQEIPRQLRGENLPEEVEIRGEV 209 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 +I+ DFLALN++++ GR P+ANPRNAA+G LR+ +P D R L+ VHG+G + Sbjct: 210 FIASKDFLALNEQIVGTGRAPFANPRNAAAGSLRQKDPADTAKRPLSMLVHGIGSRIGLD 269 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E ++ G P + + + ++ Y N R L ++IDG+V K+D+F+ Sbjct: 270 VASQSESYALLKAWGLPTSPYFKVLTGYQEVLDYINHYGEHRHDLLHEIDGIVIKIDDFA 329 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q LG +R PRW +++K+ ++ T+LLDI + +GRTG +TP +EPV + G+ + Sbjct: 330 SQNALGFTSRVPRWAVAYKYPPEEVHTKLLDILVNVGRTGRVTPFGVMEPVKVAGSTVEM 389 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+D +K + + +GD V++++AG+VIP++V ++ R + F Sbjct: 390 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVLALRDGREREFVM 438 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + + K G + RC +C Q ER+ H R AF+IE LG + Sbjct: 439 PTECPSCGTALA---PAKEGDVDI--RCPNAKSCPDQLRERVFHLAGRGAFDIEALGWEA 493 Query: 491 LDFFFKSEDPAFS-IRIPADIFTL------------QRRQQTSTTKIENILGF------- 530 + +P + +R A IF L +++ + + + ++ + Sbjct: 494 AIALTQPAEPELAPVRNEAQIFNLVAEDLALVKIKREKKVKGVLSGVHELVPYFYSKGTE 553 Query: 531 -----GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 + L+ + K + L R + +L IRHVG +R+LA + S + Sbjct: 554 EKPSEPTSNTVKLFIELEKAKAQPLWRVLVALSIRHVGPTASRALATAFGS-------MA 606 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 I A + + L V VG IA A++E++ + ++A + +++V Sbjct: 607 AIRAASEPE---LAEVDGVGPTIAAALIEWFAEDWHREIIDAWAADGVRMADERDESVRR 663 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 + +V TG+L+K R +A+E + G + +S+ TD ++ G+N G+KL+KA++LG Sbjct: 664 TLAGLTIVVTGSLEKFNRDQAKEAIINRGGKSAGSVSKNTDYVVAGENAGTKLDKAEKLG 723 Query: 706 VKIMNEEQFLFLL 718 V +++E F LL Sbjct: 724 VTVLDEAGFETLL 736 >gi|320546461|ref|ZP_08040776.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812] gi|320448846|gb|EFW89574.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812] Length = 652 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 236/704 (33%), Positives = 370/704 (52%), Gaps = 69/704 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L E++ + YY +P + DSEYD L R + A P+L PN P + Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ K + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRV-----KAEFPNASYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L+ P I VRGE Y+ K Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLAQ--PLNITVRGEAYLPKTS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255 F +N+E G+ +ANPRNAA+G LR+LN + + F + TS Q Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLNTAVVAKRNLATFLYQEVASTS---MTTQN 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 +L+++ GF VN ++ I + E+ + R LPYDIDG+V KV+ ++Q++L Sbjct: 229 NVLEELSRFGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPSFC 434 DYI +DIR+GD V+V +AG++IP V+ ++ ++R D Q P P C Sbjct: 349 VDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKR--DKQVPMPIPESC 395 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S ++ + A RC L C +Q ERL HF SRDA NI GLG + Sbjct: 396 PSCGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKL 448 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLE 551 FK+E + ADI+ L +E++L GF + S LY++I + S + Sbjct: 449 FKAE----LVHDVADIYQLT---------VEDLLSLDGFKEKSAEKLYNAIQVSKENSAD 495 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIRHVGA+ +R L + + + I+ ++A + D S+ + +G +IA + Sbjct: 496 KLLFGLGIRHVGAKASRQLLEVF-------ETIDQLVAADAD---SIASIDGLGTVIANS 545 Query: 612 IVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQ 667 + ++ A E L LK V + K V +++ +V TG L+++ R++A+ Sbjct: 546 LRSYFAKKE---ATELLHELKNVGVNFAYLGKKVPKDAQLAGLTVVLTGKLERLTRNEAK 602 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 E + LGA V+ +S+KTDI++ G + GSKL KAQ LG+ + +E Sbjct: 603 EKLQDLGAKVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDE 646 >gi|332291077|ref|YP_004429686.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5] gi|332169163|gb|AEE18418.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5] Length = 664 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 229/714 (32%), Positives = 377/714 (52%), Gaps = 59/714 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IE+ ++ +L E+ H+ YY P I D ++D ++ +A+ A P+ +DP Sbjct: 1 MTIEE---QILALRNELQSHNHSYYVLDTPTISDFDFDQKLKQLEALEAAHPEF---DDP 54 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P +++GG + + + H SL+ ++ EDL + R+ +K D + +T E Sbjct: 55 NSPTHRVGGAVTKNFETIVHENRMYSLDNSYSKEDLEDWEARV----KKMVDGEVNYTCE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I++ YE G+ + A RGDG G+DV+ I+ I ++P L + PE ++RGE+ Sbjct: 111 LKYDGASISLTYENGELLKAVTRGDGLQGDDVTTNIKTIKSVPLKLKGDYPEKFDIRGEI 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 + F A+N E +G + Y NPRN ASG L+ + ++ R L ++ + + Sbjct: 171 VLPWEGFHAMNAEREELGFELYRNPRNTASGSLKLQDSAEVARRPLQCLLYNITGNNLGI 230 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Q + LQK R GF V + A ++ + N R LPY+ DG+V KV+ Sbjct: 231 AT-QMDSLQKARDWGFRVPEAAKLAKNIDEVLEFINHWDVARRDLPYETDGVVVKVNGLQ 289 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG A++PRW +++KF +Q STRL +I Q+GRTG +TPVA LEPV + G + Sbjct: 290 QQEELGYTAKAPRWAMAYKFKAEQVSTRLREITYQVGRTGAITPVANLEPVELAGTTVKR 349 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D I+ L DIR GD V V++ GE+IPK++ + + +R D++P ++ Sbjct: 350 ASLHNADQIERL-----------DIREGDEVFVEKGGEIIPKIIAVDLTKRPADSEPTTY 398 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP C + +VR K G+ A H C + C Q + R++H++SR A +I+GLG + Sbjct: 399 ITECPECSTPLVR----KEGE--AQHYCPNDMGCPTQIIGRIQHYISRKAMDIDGLGGET 452 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + I AD++ L Q ++ S NL + I Sbjct: 453 VALLVNE----GLIVNYADLYELTVAQLLPLERM------AQKSAENLVSGVQASVQIPF 502 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGIR+VG +A+ LAK+Y S I+ II+ ++ L+ V +G IA+ Sbjct: 503 EKVLFGLGIRYVGETVAKKLAKHYKS-------IDAIISATEEE---LVAVDEIGSKIAE 552 Query: 611 AIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +++ F+ +I +E L E+S N S ++ V +G + + R++ Sbjct: 553 SVMAFFAKAEHITLIERLRSYGVQLEIS---AEKLANQSDKLAGYIFVVSGVFE-MPRNE 608 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 ++ + G VS+ +S KT ++ GD G SKLEKA+ LGV I++EE+FL L+ Sbjct: 609 LKKLIEDNGGKVSSSISSKTTYVVAGDKMGPSKLEKAESLGVTIISEEEFLNLV 662 >gi|300771799|ref|ZP_07081670.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC 33861] gi|300761185|gb|EFK58010.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC 33861] Length = 673 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 226/715 (31%), Positives = 381/715 (53%), Gaps = 52/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + +++++ L QE+++++ YY ++ +I D ++D + +A+ +P A DP Sbjct: 1 MSAVEIQEKIAQLTQELNHYNYQYYVLAQSLISDYDFDQKLKELEALESQYPQFA---DP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG++ V H P LSL ++ ++LR F RI +K + + E Sbjct: 58 NSPTRRVGGDITSRFNTVKHRWPMLSLGNTYSQDELRDFDQRI----RKIIGDDFEYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 K DG I++ Y+ GK V RGDG G++V+A +R I +IP L + + PE E+RGE Sbjct: 114 LKFDGLSISLTYKDGKLVQGVTRGDGTQGDEVTANVRTIRSIPLTLKTKDYPEEFEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL--GKTS 247 +++ K+ FL LN E G + YANPRN A+G ++ + ++ R L+ F++ L Sbjct: 174 IFMHKSAFLRLNKEREENGDQIYANPRNFAAGTIKLQDSAEVARRPLDCFLYFLYMDNRR 233 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + F+ +E L+ +R GF V + R + + S+ N + R L Y+IDG+V KV+ Sbjct: 234 KHFST-HWESLEAVRKWGFHVCDHTRLCSNIDDVFSFINYWDTERHNLSYEIDGIVIKVN 292 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +++ Q++LG A++PRW S+KF ++ T L I Q+GRTG +TPVA L+PV++ G Sbjct: 293 DYAQQEELGFTAKNPRWATSYKFKAERVETILKSISYQVGRTGAVTPVANLQPVSLAGTT 352 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+LHN + I L D+ D V V++ GE+IPKV+ + +R PDA P Sbjct: 353 VKRASLHNANEIARL-----------DLHEQDTVYVEKGGEIIPKVIAANLEKRKPDAIP 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F +P+ CP CQ+ +VR+ A H C C Q + +++HF+ R +IEG+G Sbjct: 402 FHYPTHCPECQTLLVREEGE------AVHYCPNEDGCPPQIIGKMQHFIGRKMMDIEGMG 455 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ FFK IR DI++L+ ++ ++ + FG S+ N+ I K + Sbjct: 456 NETIETFFKKG----LIRNVVDIYSLKEHEE----DLQKLERFGQKSIDNMLRGIEKSKE 507 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 E+ +F+LGIRHVG IA+ LA Y+ + AQ IA D +G Sbjct: 508 KPFEKVLFALGIRHVGETIAKKLALYFKNIDALAQASVEEIASVQD----------IGGR 557 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRH 664 IA+++ ++ P + ++ LK+ EK V + +E K + +G R Sbjct: 558 IAESVHQYLNTPIHQQQIQK-LKDYGLQFEIEEKEVVLAGNGLEGKTFLISGVFADFSRE 616 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + + G + + +S K + ++ GD G SKL KA++L V I+NE++ L L+ Sbjct: 617 ELTALIESHGGKMVSSISAKLNYLVAGDKMGPSKLAKAEKLQVPIINEQELLVLI 671 >gi|167750769|ref|ZP_02422896.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702] gi|167656204|gb|EDS00334.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702] Length = 660 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 232/705 (32%), Positives = 366/705 (51%), Gaps = 51/705 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQ + E L ++ H+ YY P I D EYD L RR I P++ + P Sbjct: 4 EQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIVSE---SSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG + KVTH + SL+ +++ +L +F R+ KK + +EPKI Sbjct: 61 TQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERV-----KKAVGKAVYCVEPKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++ Y+ G F + RGDG GED++ ++ I +IP L+ IP IEVRGEVY+ Sbjct: 116 DGLSVSLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMELNEKIP-FIEVRGEVYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K DF L + + +P NPRNAA+G LR+ + +R L+ FV L + + Sbjct: 175 KADFEKLVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIAGRELTC 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L M+ LGF V +G + + VS E+ R + YDIDG V KVD F L+ Sbjct: 235 HSESLDYMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDNFELRN 294 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+ P+W ++ K+ ++ T+LLDI+I +GRTG LTPVA EPV + G ++ A L Sbjct: 295 ELGSTAKVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSRAVL 354 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+DYI +DIR+GD + V++AG++IP+VV + + +++PF P Sbjct: 355 HNQDYID-----------SKDIRIGDIIAVRKAGDIIPEVVRSVSHAE--NSEPFVIPHI 401 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C + R + A RC + C AQ L+ ++HF SR A NI+GLG+ + Sbjct: 402 CPVCHGKAERAEDE------AVIRCV-NIDCPAQLLKNIEHFASRPAMNIDGLGEAVVKQ 454 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ I AD++ LQ++ +E + GF VS + L +I + S +R Sbjct: 455 LVENR----LISTVADLYGLQQQD------LEMLPGFAKVSASKLIANIENSKANSPDRL 504 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGI+ +G + A+ L K++ S + ++ I+ V GDI+A I Sbjct: 505 LFALGIKGIGQKNAQLLMKHFGSIEKLSETSPEEIS----------AVENFGDILANNIF 554 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 P ++ + LK + S ++ V TGTL + R +A+ + Q Sbjct: 555 TALHEP-HMTELIKRLKSYGVNTVYQSDVKSDKLAGLTFVITGTLPDMTRDEAKTLIEQN 613 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G S +S+KT ++ G+ GSKL KAQQLGV +++++Q + ++ Sbjct: 614 GGKCSGSVSKKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMI 658 >gi|206895761|ref|YP_002246502.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM 5265] gi|254781298|sp|B5Y6V5|DNLJ_COPPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206738378|gb|ACI17456.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM 5265] Length = 666 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 230/718 (32%), Positives = 385/718 (53%), Gaps = 65/718 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+A+K + L + I YH+ YY P I D EYD L R + FP+ P Sbjct: 1 MTREEAKKRIERLRELIEYHNYRYYVLDSPEISDEEYDKLYRELVTLEKQFPEFI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G VTH +P LSL+ + ++++ F R+ ++ + + E Sbjct: 58 DSPTQRVGAPPAKEFATVTHEVPMLSLDNAFTEDEIKAFDQRVRSALNQQ---HVEYFCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 K+DG +++ YE G FV + RG+G+ GEDV+A ++ I TIP R+ NIP ++E+RGE Sbjct: 115 HKLDGLAVSLLYENGLFVRGSTRGNGYVGEDVTANLKTIKTIPLRLKGENIPPVVEIRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 ++ DF ALN++ A+G+ +ANPRNAA+G +R+L+ + IT R L F +G G Sbjct: 175 AFMMLRDFEALNEQRQALGQPLFANPRNAAAGSIRQLD-SSITAQRKLYFMPYGFGLVQG 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + + Q L++ + GF +N R+A++ + + R LP+ DG+V KV+ Sbjct: 234 MDFETQERFLKQCQEWGFRINEHNRKASSIEEALEFIRYWTEHRVELPFPADGVVIKVNN 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LG A +PR+ I++KF ++ T+L D+ Q+GRTGI+TPVA LEPV + GA + Sbjct: 294 LRYWDILGTTAHAPRYAIAYKFPAEEKETKLKDVVFQVGRTGIITPVAMLEPVVLDGATV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN D ++ L D+R GD V +KRAG VIP+++ + +R + Sbjct: 354 SRATLHNFDIVRQL-----------DVRKGDVVKLKRAGMVIPEIIGVAAEKRTGKEEQI 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP+C D A +C + C AQ L H+ SRDA +I+GLG+ Sbjct: 403 EPPTTCPVCGGPTEWD--------GAYLKCV-NITCPAQLKGHLLHWASRDAMDIDGLGE 453 Query: 489 QQLD-----FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 ++ K+ + + + D+ TL R Q S TK LY++I Sbjct: 454 SIIENLVDMGLVKNIADLYKLSV-QDLLTLPRLAQRSATK--------------LYENIQ 498 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + ++ R ++ LGI VG + A+ LA+++ S IN ++ D+ L + Sbjct: 499 RSKDRPFFRVLYGLGIPRVGLKTAQMLAEHFGS-------INALLNATMDE---LTSIEG 548 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G A+ I++ Q+P+ V L+ ++ + + ++++ ++ VFTGTL + Sbjct: 549 IGTDTAETILKALQSPQ----VHELIDQLKTLGLKMEQESIEGPLKGLTFVFTGTLTSMS 604 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R A + V LG V++ +S+ D ++VG++PGSKL+KAQ+LG+ I++EE FL ++++ Sbjct: 605 RGDAAKLVQSLGGKVASSVSKNVDYVVVGEDPGSKLDKAQKLGLTIIDEEAFLKMVKR 662 >gi|15827911|ref|NP_302174.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae TN] gi|221230388|ref|YP_002503804.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae Br4923] gi|7674013|sp|O33102|DNLJ_MYCLE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781376|sp|B8ZS27|DNLJ_MYCLB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2414536|emb|CAB16425.1| DNA ligase [Mycobacterium leprae] gi|13093464|emb|CAC30658.1| DNA ligase [Mycobacterium leprae] gi|219933495|emb|CAR71800.1| DNA ligase [Mycobacterium leprae Br4923] Length = 694 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 235/729 (32%), Positives = 374/729 (51%), Gaps = 53/729 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + PI ++Q RK L +E+ H YY PII D+E+DAL R + Sbjct: 1 MSSPEADPIGPEVLQQWRK----LTEEVREHQFRYYVRDAPIISDAEFDALLDRLTVLEE 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIYRFWQ 119 P+L P+ P +GG ++ F T + + SL+ ++ ++L ++TRI + Sbjct: 57 QHPELC---TPDSPTQLVGGAGFMTDFVATEHLERMFSLDNAFSGDELNAWVTRI----R 109 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 + N + E KIDG +++ Y G+ A RGDG +GEDV+ R I +P L++ Sbjct: 110 AEIGNDAHYLCELKIDGVALSLVYRDGRLTRATTRGDGRTGEDVTLNARTIEDVPERLTV 169 Query: 180 N----IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-R 234 + +PE++EVRGEV+ DF ALN ++ G+ P+ANPRN+A+G LR+ +P R Sbjct: 170 SDIYPLPEVLEVRGEVFFRVVDFQALNTSLVEEGKNPFANPRNSAAGSLRQKDPAVTAHR 229 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSI 291 L HGLG Q++ +R G PV+ N G+ ++Y+ E Sbjct: 230 KLRMICHGLGHIEGFRPATQHQAYLALRDWGLPVSEHTTLVNDIAGVQGCIAYWAEH--- 286 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R + ++IDG+V K+DE +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG Sbjct: 287 RHEVDHEIDGIVVKIDEVTLQRRLGSTSRAPRWAIAYKYLPEEAQTKLLDIRVNVGRTGR 346 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TP A + PV + G+ + ATLHN +K R G + +GD V++++AG+VIP Sbjct: 347 VTPFAFMTPVKVAGSTVGQATLHNPSEVK---------RKG--VLIGDTVVIRKAGDVIP 395 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +V+ +V+ R + F P+ CP C + + + K G A RC +C Q ER Sbjct: 396 EVLGPVVDLRDGSEREFVMPTTCPECGTTLAPE---KEGD--ADIRCPNARSCPGQLRER 450 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 + H SR A +I+GLG + ++ I D+FTL + T N G Sbjct: 451 VFHVASRSALDIQGLGYEAGVALLAAQ----VITSEGDLFTLTEKALLRTELFRNKAGEL 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + L +++K + L R + +L IRHVG AR+LA + S ++ I+A + Sbjct: 507 SANGKRLLVNVDKAKTAPLWRVLVALSIRHVGPTAARALATEFGS-------VDAILAAS 559 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 + L V VG IA A+ E++ + V + + +V E Sbjct: 560 PE---QLAAVEGVGTTIAAAVTEWFTVDWHRVIVNKWRAAGVRMVDERDTSVLPTCEGLT 616 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +V TG+L R A+E + G V+ +S+K ++VGD PG K +KA +LGV I+NE Sbjct: 617 IVVTGSLAGFSRDDAKEAIVARGGKVAGSVSKKIAYVVVGDLPGYKYDKAVELGVPILNE 676 Query: 712 EQFLFLLQQ 720 + F LL+Q Sbjct: 677 DGFRLLLEQ 685 >gi|291513768|emb|CBK62978.1| DNA ligase, NAD-dependent [Alistipes shahii WAL 8301] Length = 674 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 220/705 (31%), Positives = 379/705 (53%), Gaps = 50/705 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ + L +++ H+ YY + P I D E+DA+ R + A P+ A DPN P + Sbjct: 3 RERIEELRRQLELHNFKYYVENAPEISDFEFDAMMRELQDLERAHPEYA---DPNSPSVR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ V H LSL +++++L +FI RI R D + E K DGT Sbjct: 60 VGSDLTAEFRTVKHRYAMLSLGNTYSLDELHEFIGRIEREAGATD-----YVCELKFDGT 114 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++ YE G+ V A RGDG G+DV+A +R + T+P R+ + P++ E+RGE+ + Sbjct: 115 AISLTYEHGRLVRAVTRGDGVEGDDVTANVRTVRTVPLRLRGTDWPDLFEIRGEILMPYA 174 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQY 255 F LN E A G + +ANPRNAA+G L++ + + R L+ ++ L E+ + Sbjct: 175 SFDRLNAEREANGEQLFANPRNAAAGTLKQQSSAVVARRGLDCTLYQLA-GDELPFTSHW 233 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+K R GF V++ R + I ++ + R LP+ DG+V KV++F++++QL Sbjct: 234 ESLEKARQWGFKVSDAARICRSVAEIDAFIEHWDTARRRLPFPTDGVVIKVNDFAVRRQL 293 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A++P+W +++KF ++A+TRL + Q+GRTG +TPVA LEPV + G + ATLHN Sbjct: 294 GFTAKAPKWAVAYKFKAERAATRLDSVSFQVGRTGAITPVANLEPVLLAGTTVRRATLHN 353 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 + + L DIR GD V V++ GE+IPK++ + + +R D++PF + + CP Sbjct: 354 AEQMAQL-----------DIRPGDTVYVEKGGEIIPKIIGVDLAQRPADSRPFEYITVCP 402 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +VR G+ A H C C Q + R+ HF+ R A +IEGLG++ ++ + Sbjct: 403 ECGTPLVR----YEGE--AKHYCPNQSGCRPQIIGRIIHFIRRKALDIEGLGEETVELLY 456 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 ++ +R AD++ L+ Q ++ G+ S N+ S+ + + + +R +F Sbjct: 457 ENG----LVRDVADLYDLRAEQLAPLPRL------GEKSADNIIRSVERSKAVPFQRVLF 506 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR VG A+ LA+++ S ++ ++ ++ L+ VG IA AI+E+ Sbjct: 507 GLGIRFVGETTAKYLAEHFRS-------LDAVMRATREE---LVEADEVGGRIADAIIEY 556 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + N+ + L + S + + V +G + R + +E + G Sbjct: 557 FAEEDNLRIIRRLRAAGLQFEAEARRLASEALAGRSFVVSGKFTR-SRDEMKELIELHGG 615 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 A +S D ++ GD G +KL+KA++LGV+I++EE+F+ +++ Sbjct: 616 RNLAAVSGSVDYLVAGDKMGPAKLKKAEKLGVRIISEEEFIAMIE 660 >gi|86142854|ref|ZP_01061293.1| DNA ligase [Leeuwenhoekiella blandensis MED217] gi|85830886|gb|EAQ49344.1| DNA ligase [Leeuwenhoekiella blandensis MED217] Length = 663 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 226/710 (31%), Positives = 372/710 (52%), Gaps = 57/710 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A++++ +L QE+ ++ YY KP + D +D + + P+ D N P Sbjct: 3 AQEKIEALRQELRQYNYEYYVLDKPQVDDYTFDQKLKELQEMEAKHPEFY---DANSPTL 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GGE+ + V H SL+ ++ EDL + RI + D ++ + E K DG Sbjct: 60 RVGGEVTKNFATVKHEHRMYSLDNSYSQEDLEDWEKRIKKLV----DGAVEYVCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YE+G V A RGDG G+DV+ ++ I ++P L + P ++RGE+ + Sbjct: 116 ASISLTYEEGVLVRAVTRGDGVQGDDVTNNVKTIRSVPLKLKGDFPAKFDIRGEIVLPLA 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-GKTSEIFAKGQ 254 F A+N E + G +PY+NPRN ASG L+ + ++ R L ++ + G+ +I + Q Sbjct: 176 GFAAMNAERVEAGDEPYSNPRNTASGSLKLQDSAEVAKRPLECLLYSIVGENLDIAS--Q 233 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E L+K R GF V ++ + + N R LPY+ DG+V KV+ F Q++ Sbjct: 234 FESLEKARSWGFKVPEVAKKTASTAETFEFLNYWDEHRHDLPYETDGVVIKVNSFRQQEE 293 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A++PRW +++KF +QA T L I Q+GRTG +TPVA L PV + G ++ A+LH Sbjct: 294 LGFTAKAPRWAMAYKFKTEQAETVLEKITYQVGRTGAITPVANLVPVQLAGTIVKRASLH 353 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L D+R GD V V++ GE+IPK+V + +R PD+ + S C Sbjct: 354 NADQIEKL-----------DVREGDHVYVEKGGEIIPKIVGVDFEQRDPDSTATEYISEC 402 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + +VR + G+ A H C + C Q + R++HF+SR A +IEGLG + + Sbjct: 403 PECGTTLVR----QEGE--AQHYCPNDMGCPPQIIGRIQHFISRKAMDIEGLGGETVALL 456 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 I+ AD++TL++ Q I + + S NL I + I ER + Sbjct: 457 VNE----GLIKNYADLYTLKKEQ------ILPLERMAEKSADNLIKGIEASKQIPFERVL 506 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIR+VG +AR LAK + + A+ +L+ V +G IAQ++V Sbjct: 507 FGLGIRYVGETVARKLAKQFKTIDALAEASEE----------TLVAVDEIGARIAQSVVS 556 Query: 615 FYQNPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 F+ N ++ L E+ S+ +N + +++ + V +G K+ R + ++ Sbjct: 557 FFSEEANQDLIKRLKDYGLQLELDASV---LENQTDKLQGQTFVISGVFSKVSRTELKKL 613 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G S +S KT+ ++ G+N G SKL+KA++LGV I++E+ FL +L Sbjct: 614 IEDNGGKASGSISSKTNYLVAGENMGPSKLQKAEKLGVPIISEDDFLAML 663 >gi|288904984|ref|YP_003430206.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34] gi|288731710|emb|CBI13271.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34] Length = 652 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 236/704 (33%), Positives = 370/704 (52%), Gaps = 69/704 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L E++ + YY +P + DSEYD L R + A P+L PN P + Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ K + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRV-----KAEFPNASYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L+ P I VRGE Y+ K Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLAQ--PLNITVRGEAYLPKTS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255 F +N E G+ +ANPRNAA+G LR+LN + + F + TS Q Sbjct: 172 FDKINKERRDSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLYQEVASTS---MTTQN 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L+++ GF VN ++ I + E+ + R LPYDIDG+V KV+ ++Q++L Sbjct: 229 DVLEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G +++ ATLHN Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTMVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPSFC 434 DYI +DIR+GD V+V +AG++IP V+ ++ ++R D Q P P C Sbjct: 349 VDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKR--DKQVPMPIPESC 395 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S ++ + A RC L C +Q ERL HF SRDA NI GLG + Sbjct: 396 PSCGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKL 448 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLE 551 FK E + ADI+ L +E++L GF + S LY++I + S + Sbjct: 449 FKVE----LVHDVADIYQLT---------VEDLLSLDGFKEKSAEKLYNAIQVSKENSAD 495 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIRHVGA+ +R L + + + I+ ++A + D S+ + +G +IA + Sbjct: 496 KLLFGLGIRHVGAKASRQLLEVF-------ETIDQLVAADAD---SIASIDGLGTVIANS 545 Query: 612 IVEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQ 667 + ++ A E L LK + K VS +++ +V TG L+++ R++A+ Sbjct: 546 LRSYFAKKE---ATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAK 602 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 E + LGA V+ +S+KTDI++ G + GSKL KAQ LG+ + +E Sbjct: 603 EKLQDLGAKVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDE 646 >gi|300709542|ref|YP_003735356.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3] gi|299123225|gb|ADJ13564.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3] Length = 703 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 238/724 (32%), Positives = 381/724 (52%), Gaps = 57/724 (7%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 L PI+ L ++A +E L + I +HD YY + P I D YD L +R I +F Sbjct: 17 LTPIDEL--DEAEREARRLREAIRHHDRRYYVENDPEIADRTYDTLFQRLVDIEESFG-- 72 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P+ P ++GGE L V H P LS+++ + D+R+F R+ R + Sbjct: 73 --LQIPDSPTRRVGGEPVEELETVEHVAPMLSIQQSGDAADVREFAERMDR-----EIGE 125 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + +T EPK DG I + Y++G F A RG+G G+DVSA +R I +IP+ L P+ + Sbjct: 126 VTYTCEPKFDGVSIEVVYDEGVFERAVTRGNGREGDDVSANVRTIRSIPQRLRGEYPDFL 185 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 VRGE+++ ++ F A N E + G +P+ANPRNA +G +R+L+PT R L+ F + + Sbjct: 186 AVRGEIFMPRDAFQAYNRERVERGDEPFANPRNATAGTIRQLDPTVTAERPLDCFFYDIL 245 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 SE A +E L + G N+ A ++Y + + R L Y+IDG+V Sbjct: 246 DASEGIAT-HWEELDALESYGLQTNDRAELAADIDEAIAYRDRLVEDREGLNYEIDGVVI 304 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVDE + ++LG +R RW ++KF + T + D+ +Q+GRTG LTPVA L+PV++G Sbjct: 305 KVDEKAACEELGTTSRHYRWAFAYKFPARAGETAIQDVALQVGRTGRLTPVALLDPVDVG 364 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ A+LHN I+ +++ VGD V V+RAG+VIP VD +V +R Sbjct: 365 GVTVSRASLHNPAEIE-----------EKEVNVGDVVRVERAGDVIP-YVDEVVEKRS-- 410 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + F FP+ CP+C S + RD G + CTGGLAC AQ ++++ S +IE Sbjct: 411 SGYFEFPATCPVCDSAIERD-----GPIAF---CTGGLACPAQLRRSVEYYASDSGLDIE 462 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +++D ++ S+ AD++ L+R + + G+G S NL + Sbjct: 463 GLGGERVDQLLEAGLVEESV---ADLYRLER------ADLVELEGWGQKSAENLLAELEA 513 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 ++ L F+ ++GI HVG AR LA + +++ ++ + D+ L V + Sbjct: 514 SKSPPLFAFLAAIGIPHVGRATARELAGAF-------GDLDGLMDASEDE---LREVDEI 563 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQR 663 G+++A+ I +F+ + N + L+E R E S + + +VFTG+L R Sbjct: 564 GEVVAREIRDFFDSEGNRRVLRE-LREAGVEPERAEDRESGDTLSGLTVVFTGSLPDRTR 622 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +AQ + G V+ +S TD ++VG+NPG SK E A GV + E+F L+ + Sbjct: 623 SEAQGLIEGAGGSVTGSVSGNTDYLVVGENPGSSKREDAADEGVPELTPEEFEALVDESE 682 Query: 723 TTLR 726 R Sbjct: 683 EADR 686 >gi|291542878|emb|CBL15988.1| DNA ligase, NAD-dependent [Ruminococcus bromii L2-63] Length = 661 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 244/714 (34%), Positives = 380/714 (53%), Gaps = 73/714 (10%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A+ L +++ YH++ YY +P I D +YD L R + I FP L + P P N Sbjct: 6 AQNRAQELTKQLEYHNNLYYNQDEPEISDYDYDMLMRELENIEKEFPSL---KSPMSPTN 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG VTH + SL ++ E+LR+F R+ ++ ++ + +EPK DG Sbjct: 63 RVGGNAGEKFSPVTHEVVMESLHDSFSHEELREFDARV-----RETVPNVRYVVEPKFDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 ++ YE G FV + RGDG GEDV+ + I ++P+ + N PE +EVRGEVY+S N Sbjct: 118 LSVSCEYENGVFVRGSTRGDGSVGEDVTENLMTIKSLPKRIP-NAPEYLEVRGEVYMSFN 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F AL K + NPRNAA+G LR+ N IT R L+ FV + + + + Sbjct: 177 SFDALTRRQEENEEKTFKNPRNAAAGSLRQKN-AKITAQRSLDIFVFNIQQIRGMTIESH 235 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE-------MKSIRSTLPYDIDGLVYKVD 307 + L + LGFP F+ + +E + ++R L Y IDG V KVD Sbjct: 236 IQGLDYLTELGFPT--------AFYSVYDNVDEVIEEIERIGNMRGELDYAIDGAVVKVD 287 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 F+ ++ LG A+ P+W ++K+ ++ T+LL+I+I +GRTG+LTPV EPV + G Sbjct: 288 SFASRRLLGSTAKYPKWAEAYKYPPEEKPTKLLNIEINVGRTGVLTPVGNFEPVLLAGTT 347 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN+D+I D G I VGD V++++AGE+IP+V+ V E +A P Sbjct: 348 VSRATLHNKDFI---DEKG--------ICVGDTVIIRKAGEIIPEVLS--VKEHAENAVP 394 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FPS CP C + V D AA RCT C AQ L HFVSRDA +I+GLG Sbjct: 395 FEFPSVCPSCGNPVTHDEGE------AAIRCT-NTDCPAQLTRHLIHFVSRDAMDIDGLG 447 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 L+ + D ++ PAD++ L+ +S + + S NL SI K + Sbjct: 448 PAILE---QLSDEGL-VKSPADLYRLKAEDISSLERK------AEKSAQNLISSIEKSKE 497 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R +F+LGIR++G + A+ + +NFA I++I++ +D+ ++ G + Sbjct: 498 NELFRLVFALGIRNIGLKAAKIIC------ENFAT-IDDIMSAKAEDFE---KIDGFGAV 547 Query: 608 IAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 +A+++ ++ I +++L ++ PS KN E K V TGTL + R Sbjct: 548 MAESLENYFSLDGTKELIADLKSLGLKMKPS---QPKNTGGLFEGKTFVLTGTLPTMTRS 604 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A + + Q G S+ +S+KT ++ G++ GSKL KAQ LGV I++EE+ +L Sbjct: 605 EASKLIEQNGGKTSSSVSKKTSYVLAGEDAGSKLTKAQTLGVTIISEEELKEML 658 >gi|194335632|ref|YP_002017426.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1] gi|254781384|sp|B4SCX5|DNLJ_PELPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194308109|gb|ACF42809.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1] Length = 674 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 229/715 (32%), Positives = 376/715 (52%), Gaps = 58/715 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A + ++ L +EI H YY +KP + D E+D L + + FP L P+ P Sbjct: 6 RAAEAIAQLRREIERHTHLYYVEAKPELSDFEFDQLLDQLITLERQFPQLL---TPDSPS 62 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + V H P LSL ++I ++ +F R+ + + E K D Sbjct: 63 QRVGGAITREFPAVQHREPMLSLSNSYSITEVEEFYNRVRKLLALEGVVEQEMVAELKFD 122 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-------PEIIEVR 188 G I++ Y+ G V A RGDG G+D++A ++ + TIP L + IEVR Sbjct: 123 GVAISLIYQDGILVRGATRGDGRQGDDITANLKTVATIPLRLEETLVAALQGEERAIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLG 244 GEV++ K DF LN+ R +ANPRNA +G L+ + ++ R ++ +++ GL Sbjct: 183 GEVFMRKEDFERLNESRPDEDR--FANPRNATAGSLKLQDSGEVARRSMSFVAYYLKGLK 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 S L+ + LGF + R NT I +Y E R LPY+ DG+V Sbjct: 241 DES----TPHIHRLELLARLGFFTGDHYRLCNTLEEINTYIAEWAEKRWQLPYETDGVVL 296 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+++ +++LG A+SPRW I++K+ +QA + L ++ Q+GR G +TPVA LEPV + Sbjct: 297 KLNDVPFREKLGATAKSPRWAIAYKYPAQQARSVLQNVLFQVGRLGTITPVAELEPVLLA 356 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ ++ +TLHN D I+ L G ++R DRV+++++GEVIPKVV + ER D Sbjct: 357 GSTVSRSTLHNFDEIERL---GLMLR--------DRVIIEKSGEVIPKVVRTLFEERPAD 405 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A P P+ CP C + +VR N ++ C C AQ RL HF SR+A +I+ Sbjct: 406 AMPILPPTHCPSCGAPLVRPENE------VSYSCPNEEECPAQIKGRLLHFASRNAMDIQ 459 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 LG D + ++ P D++ LQ Q +E + G S N+ ++ K Sbjct: 460 TLG----DALVEQLVAKGLVKDPGDLYFLQEPQ------LEKLERMGPKSAQNILRALEK 509 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R S ER +++LGIRHVG AR L++ S +++ +++ L+ I P + Sbjct: 510 SREKSYERLLYALGIRHVGRATARELSQACPSI--------DLLREASEEQLATI--PDI 559 Query: 605 GDIIAQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 G ++A++I++++ P +E L + S ++ V+ E ++FTG+L++ R Sbjct: 560 GPVVARSIIDYFAKPSWPHLLEKLRTAALQLSASEPKEQVNRNFEGVTVLFTGSLERYDR 619 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 KA E V + G V +S+KT +++ G +PGSKL+KA +LGV++++E++F +L Sbjct: 620 QKASELVLERGGRVVGSVSKKTGMVVAGQDPGSKLQKANKLGVRVVSEDEFEAML 674 >gi|317132010|ref|YP_004091324.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3] gi|315469989|gb|ADU26593.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3] Length = 661 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 229/696 (32%), Positives = 359/696 (51%), Gaps = 52/696 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L + +S H+ YY P I D EYD + R + + A P++ P+ P ++GGE Sbjct: 10 LRKALSRHNYLYYVLDAPEIEDFEYDRMLRELEELEAAHPEIV---TPDSPTQRVGGEAV 66 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 V H +P SL+ ++++E++R F R++ +++ + +EPKIDG + + Y Sbjct: 67 GQFEPVRHEVPMESLQDVFSVEEVRAFDERMHAAL-----STVRYAVEPKIDGLSVALEY 121 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 G FV + RGDG +GEDV+A +R + +IP LS +P +EVRGEV++ F AL Sbjct: 122 RNGLFVRGSTRGDGVTGEDVTANLRTVRSIPLRLSRPLP-FLEVRGEVFMPVAKFEALVR 180 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262 K + NPRNAA+G LR+ NP + R L+ FV + + + ++ Sbjct: 181 AQELREEKLFKNPRNAAAGSLRQKNPKITSARGLDIFVFNIQRIEGATVESHLAGHALLK 240 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 LGF V +T + + R +LPY IDG V KVD+F+ ++ LG A+ P Sbjct: 241 ELGFKVVAHT-ACDTLEKTETEITRIGESRGSLPYGIDGAVVKVDDFTARRMLGSTAKFP 299 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 RW ++ KF ++ T LL IDI +GRTG LTP A LEPV + G+ + A+LHNED+I+ Sbjct: 300 RWAVAFKFPPEEKRTGLLSIDINVGRTGALTPTAVLEPVLLAGSTVARASLHNEDFIR-- 357 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 +DIR+GD V+V++AG++IP++V + H +P+ P+ CP C + V Sbjct: 358 ---------EKDIRIGDTVVVRKAGDIIPEIVSVA---EHGGGKPYRMPTACPSCGAPVA 405 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 R+ K A RC C AQ L L HF SRDA +IEG+G ++ Sbjct: 406 RE------KDEAVLRCQNP-DCPAQLLRHLIHFASRDAMDIEGMGPALVESLVGE----G 454 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +R AD++ L + K+E + G S NL +I + L R +++LG+R V Sbjct: 455 LVRSIADVYDL---NAEAVAKLERM---GKKSAENLIAAIETSKRAGLARLLYALGVRQV 508 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G + A +A + S + + + D+ L + +G IIA+ +V F+ Sbjct: 509 GQKAAGLIAARFGSME-------RLFSATEDE---LCAIDEIGGIIAENVVRFFALEDTA 558 Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 VE L R ++ + + + V TGTL K R +A++ + LG V+ +S Sbjct: 559 RLVERLRAAGVDLTAREQEVADTRLSGQIFVLTGTLSKYSREEAKKRIEALGGKVTGSVS 618 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +KT ++ G+ GSKL+KA LGV +++E F LL Sbjct: 619 KKTSYVVAGEEAGSKLDKALALGVPVLDEAAFEQLL 654 >gi|304384418|ref|ZP_07366824.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973] gi|304334516|gb|EFM00803.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973] Length = 680 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 235/712 (33%), Positives = 375/712 (52%), Gaps = 59/712 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ R++L + H+ YY + P I D E+D + + P+ +DPN Sbjct: 22 IEQLRRDLHA-------HNYKYYVLNAPTIGDQEFDEMMHELQRLETLHPEW---DDPNS 71 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +++ +V H P LSL +N +D+ ++ + + +D E K Sbjct: 72 PTQRVGSDLSTGFAQVKHRYPMLSLSNTYNEQDVAEWYESVRK---GLNDEDFEVCCEMK 128 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 DG I++ Y G+ V RGDG G+DV+A +R I IP VL P E+RGE+ Sbjct: 129 YDGLSISLTYVDGRIVQGVTRGDGVQGDDVTANVRTIHAIPLVLPGTGYPHEFEIRGEIL 188 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL-GKTSEIF 250 + F LN E A +ANPRNAASG L+ L+P + TR L+ +++ L G+T + Sbjct: 189 MPWAVFEQLNKEREAAEEPLFANPRNAASGTLKSLDPALVATRRLDAYLYYLLGET--LP 246 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A G YE L GF ++ G+++ T I ++ S R LP DG+V KV+ Sbjct: 247 ADGHYENLMAAASWGFKISAGMKKVRTLEEIYAFIRYWDSERKNLPVATDGIVLKVNSLR 306 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG A+SPRW I++KF ++A TRL ++ Q+GRTG +TPVA +EPV + G + Sbjct: 307 QQRALGFTAKSPRWAIAYKFKAERACTRLNEVTYQVGRTGAVTPVANMEPVQLAGTTVKR 366 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+NED+I+ D+ +GD V V++ GE+IPK+V + R DA P F Sbjct: 367 ATLNNEDFIRSF-----------DLHLGDYVYVEKGGEIIPKIVGVDTTRRLADALPVHF 415 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP C + +VR G+ AAH C ++C Q R++HF++R A NIE LG + Sbjct: 416 ITVCPECGTSLVR----YEGE--AAHYCPNDVSCPPQVKGRIEHFIARKAMNIESLGPET 469 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D +++ IR AD++ ++ Q N G + S + I + +N+ Sbjct: 470 VDEYYRRG----LIRNIADLYEIRTEQI-------NGDGSREKSAQRVVAGIAQSKNVPF 518 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F+LGIR VG AR LA+ + + I+ ++ + D+ L+++ VG IA Sbjct: 519 ERVVFALGIRFVGETSARLLARRF-------KNIDALMEASPDE---LMQIEGVGMSIAN 568 Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++V +++NP N VE L + ++ E ++ + K +V +G R + + Sbjct: 569 SVVGYFRNPVNREIVERLRGYGLQMALSADEMTGMTDRLAGKTVVISGVFSHHSREEYKR 628 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + Q G + +S KT I+ GD+ G SKLEKA++LGV +++EE FL +++ Sbjct: 629 MIEQNGGKNTGSISSKTSFILAGDHMGPSKLEKAEKLGVPVIDEETFLSMIE 680 >gi|298369197|ref|ZP_06980515.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314] gi|298283200|gb|EFI24687.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314] Length = 830 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 238/687 (34%), Positives = 362/687 (52%), Gaps = 111/687 (16%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K L++L +Y YY P + D+EYD L R +A+ P+L P+ P ++ Sbjct: 9 KHLTALLNRYAYE---YYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEP 132 GGE +V H +P LSL ++ +D +Y F Q+ D + + +EP Sbjct: 63 GGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEP 122 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV Sbjct: 123 KFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEVRGEV 182 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 + K DF ALN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + Sbjct: 183 LMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGG 241 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYK 305 F A+ + L + LGF + NG F I +++Y +M+ R LPY+IDG+V K Sbjct: 242 FVAEEHIQELAYFQELGFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVK 299 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 300 VNSLAQQRELGFISRAPRWAIAHKFPAEEALTVVEAIDVQIGRTGTVTPVARLQPVFVGG 359 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH--- 422 +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 360 VTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQE 408 Query: 423 -----------------------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 P +P+ P+ CPIC S + R+ G+ V Sbjct: 409 TAVAVSDGLKHQQDDLFAETPSANQTQSVPLHKPYRLPTHCPICHSEIERE----EGEAV 464 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-- 511 A RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + +R AD++ Sbjct: 465 A--RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRL 518 Query: 512 ---TLQRRQQTSTT-KIENILGFGDVSVTNLYDS-------------------INKRRNI 548 TLQ+ ++T+ EN G + +L +S I + Sbjct: 519 DIPTLQKMKETADKGSSENENGDAETVSDDLSESNTQNGKKQPTKWAENILAGIEASKTP 578 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L RF+F+LGIRHVG A++LA+ + S ++ + I+A +P +G ++ Sbjct: 579 ELARFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILAC----------LPDIGTVV 628 Query: 609 AQAIVEFY-QNPRNICAVEALLKEVSP 634 A++I F+ Q+ + E L V+P Sbjct: 629 ARSIAHFFAQDAQQAMIDELLAAGVAP 655 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%) Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 +++ + K V TGTL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA Sbjct: 746 DLNEAVAGKTFVLTGTLPILKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKA 805 Query: 702 QQLGVKI 708 LGV + Sbjct: 806 NALGVAV 812 >gi|160884627|ref|ZP_02065630.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483] gi|156110366|gb|EDO12111.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483] Length = 666 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 237/713 (33%), Positives = 374/713 (52%), Gaps = 63/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E+ H+ YY + P I D E+D R + A P+ +D N P + Sbjct: 4 KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P+ E+RGE+ + Sbjct: 117 SISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPDSFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + + +R L+ +++ L + G Y Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK L Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429 D I+GL D+ +GD V V++ GE+IPK+ + DA+ F Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 F CP C S++VR G+ AAH C AC Q +++HF+SR A NI+GLG + Sbjct: 400 FIVNCPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F++ I+ AD++ L + I+ + G+ S NL I + + + Sbjct: 454 TVDMFYR----LGLIKNTADLYKL------TADDIKGLDRMGEKSAENLITGIAQSKTVP 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER IF+LGIR VG +A+ +AK + + + Q D L+ + +G+ IA Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666 Q+I+ ++ N N V A LKE + R E+++S ++ + +V +G R + Sbjct: 554 QSILAYFANESNRELV-AKLKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEY 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +E + + G +S KT I+ GDN G +KLEKA++LG+ I++E++FL L+ Sbjct: 613 KELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665 >gi|296123087|ref|YP_003630865.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776] gi|296015427|gb|ADG68666.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776] Length = 707 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 238/732 (32%), Positives = 381/732 (52%), Gaps = 71/732 (9%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +QAR L L QEI HD YY ++ I D EYD L R + AFP+L ++ P+ Sbjct: 18 SADQARHLLDKLRQEIRRHDRLYYVLAQNEISDLEYDRLMARLLEVEAAFPELTTADSPS 77 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-----FWQKKDDNSIF 127 K+GGE +V HS+P LS++ +++ L +F ++ R W+ + Sbjct: 78 ---QKVGGEPIEGFVQVAHSVPMLSIDNVYDESGLLEFGQKVSRRASEVGWK----GPME 130 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-------SL- 179 + E K+DG +++ YE+GK + A RGDG G+DV+ + I +P L SL Sbjct: 131 WLAEFKVDGVALSLIYEEGKLIRAVTRGDGRVGDDVTHNAKTIKGVPLFLEDGSSKKSLF 190 Query: 180 ---NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RY 235 NIP ++EVRGE YI DF + + G +P+ N RNA +G L+ L+P R Sbjct: 191 AESNIPRLLEVRGEAYIGNQDFAKVRAHQLERGEEPFKNSRNATAGSLKLLDPKLCAQRQ 250 Query: 236 LNFFVHGLGKTSEIFA---KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR 292 L FF H LG E A K + L+ +G P +F V+ M Sbjct: 251 LRFFAHSLGAIDEQEATRFKTHADYLELFYQVGLPTVPMTACHPSFEAAVAASPTMMEAL 310 Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352 STL +++DGLV+KV+ +L+ +LG ++SPRW++++K+ +A+T++L+I +Q+G+TG+L Sbjct: 311 STLDFEVDGLVFKVNNLALRAELGMTSKSPRWIVAYKWERYEAATKVLNITVQVGKTGVL 370 Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412 TPVA LEPV I G ++ ++LHN D I+ L + VGD V+V++AG++IP Sbjct: 371 TPVADLEPVEIAGTTVSRSSLHNRDEIERL-----------GLGVGDTVIVEKAGKIIPH 419 Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472 +V + + R + P+ FP CP C + V +D + G + RC + C A+ E L Sbjct: 420 IVRVEEHLRPTNTAPYRFPETCPECSTIVEQD---EGGVYI---RCP-NINCPARFRESL 472 Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532 ++F SR A +IEGLG + ++ S ++ +D++ L ++ Sbjct: 473 RYFASRQAMDIEGLGTKLVEQLVSSR----LVQSISDLYRLVDKRAELLELERLGEK--- 525 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHN 591 SV +L + R L R + +L IRHVG A+ LA+ + S AQ I + A Sbjct: 526 -SVDSLLAGLEASRQQPLWRLLTALNIRHVGQRTAQILAERFGSMDRLSAQTIEELSA-- 582 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG--RHEKNVSSE--- 646 P VG++IAQ++ F+ +E LK + ++G +K +++ Sbjct: 583 ---------TPEVGEVIAQSVHHFFHTEYGSKLIEE-LKNLGLNLGTESEQKQIAATEGV 632 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K V TGTL + R + +E + G ++ +S+KT ++ G+N GSKL KAQ LGV Sbjct: 633 LSGKTFVVTGTLPSMGREEIEELIRLHGGHAASSVSKKTSFVVAGENAGSKLTKAQSLGV 692 Query: 707 KIMNEEQFLFLL 718 ++NE +F+ L+ Sbjct: 693 PVINEAEFMKLI 704 >gi|328956034|ref|YP_004373367.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2] gi|328456358|gb|AEB07552.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2] Length = 752 Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 250/733 (34%), Positives = 375/733 (51%), Gaps = 76/733 (10%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L + + YH YY P I D+++D L R I PDL P+ ++GG ++ Sbjct: 51 LRRLLDYHAYRYYALDAPEISDAQFDRLLRELQQIEVEHPDLI---TPDSYTQRVGGFVS 107 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 +TH S++ ++++L ++ R+ S +T E KIDG + + Y Sbjct: 108 GQFAPITHMARMYSIDDAMDLDELDAWLDRVESALGA---GSAVYTCELKIDGLGVALTY 164 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--------NIPEIIEVRGEVYISK 195 GKFV AA RGDG+ GEDVS IR I +P LS + E IEVRGEVY+ K Sbjct: 165 RSGKFVRAATRGDGYVGEDVSRNIRTIADVPMRLSTEAVERMGDDASEAIEVRGEVYMPK 224 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 F LN A GR P+ANPRNAA+G LR+ +P R L+ F++ L T+ + Q Sbjct: 225 GSFARLNATADAEGRPPFANPRNAAAGSLRQKDPAVTARRDLSTFMYALADTAPVHVTSQ 284 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L +R GF VN V + + + + + + R L YDIDG+V KVD F LQ++ Sbjct: 285 LEFLDWLREAGFHVNPNVARCASPAQVHDFCADALAHRGGLDYDIDGVVVKVDSFELQER 344 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW I+ KF ++ T L +I IQ+GRTG+LTPVA+ +PV++ G+ I ATLH Sbjct: 345 LGFTARAPRWAIAFKFPPEERRTVLREIRIQVGRTGVLTPVAQFDPVSVAGSTIARATLH 404 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ +D+RVGD ++V +AG+VIP+VV +++ R A+P+ P C Sbjct: 405 NIDEIE-----------RKDVRVGDTIIVHKAGDVIPEVVGPVLDLRADGARPYQMPDRC 453 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + VVR+ G++ A RC L C AQ ERL H+VSR +++G+G + +D Sbjct: 454 PACGNPVVRE----PGQV--AIRCV-SLDCPAQLHERLLHWVSRGCMDVDGVGAELVDKL 506 Query: 495 FKSEDPAFSIRIPADIFTLQRRQ----------QTSTTKIENILG----FGDVSVTNLYD 540 A +R AD +TL Q Q + K G G + D Sbjct: 507 VD----AGLVRDVADFYTLTSEQIAALDTGRVYQKTVAKKGVRAGDPILVGKTVADKIAD 562 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +++ ++ L R +F+LGIRHVG + LA+++ S I +I N ++ + Sbjct: 563 ELDRSKSRPLGRVLFALGIRHVGKSVGELLARHFGS-------IEALIEANEEE---IAG 612 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSI---GRHEKNVSSE----- 646 + +G IA + F+ P N+ + L +E S + E VS E Sbjct: 613 IDGIGPKIASSTKMFFSVPENLQVLSRLREAGVGTQEGSGEVEAREAEESGVSVELARQR 672 Query: 647 -IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 +E V TG+L+ R +A + LGA V+ +S++T +I G GSKL KA LG Sbjct: 673 PLEGLTFVLTGSLEHRTRDQAAAALVALGARVAGSVSKRTSFVIAGPGAGSKLTKAASLG 732 Query: 706 VKIMNEEQFLFLL 718 + +++E + +L Sbjct: 733 IAVLDERELERIL 745 >gi|139438245|ref|ZP_01771798.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC 25986] gi|133776442|gb|EBA40262.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC 25986] Length = 742 Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 242/725 (33%), Positives = 368/725 (50%), Gaps = 68/725 (9%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ YH YY P I D+ +D + I A+PDL P+ ++GG ++ Sbjct: 40 LRHELDYHAYRYYMLDAPEITDAAFDKMLVELQEIEAAYPDLVT---PDSYTQRVGGYVS 96 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 VTH S++ ++++L ++ R ++ +T E KIDG + + Y Sbjct: 97 EQFTPVTHMARMYSMDDAMDLDELDAWLQRTEDALGA---GNVTYTCELKIDGLGVALTY 153 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--------LNIPEIIEVRGEVYISK 195 + G FV AA RGDG +GEDVS +R I +P LS + IEVRGEVY+ K Sbjct: 154 QNGTFVRAATRGDGTTGEDVSLNVRTIKDVPMHLSEPALTHMGADRERTIEVRGEVYMPK 213 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 F+ LN+E A GR P+ANPRNAA+G LR+ +P R L F++ + T + Q Sbjct: 214 GSFVRLNEEADAEGRDPFANPRNAAAGSLRQKDPKVTARRDLATFIYAIADTDPLHVHSQ 273 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 E L +R GF VN V + T + + + R L YDIDG+V KVD F Q Sbjct: 274 REFLDWLRSAGFSVNPNVARCATPAEVHEFCAQALEHRGDLDYDIDGVVVKVDSFQQQLD 333 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW I+ KF ++ T L +I IQ+GRTG+LTPVA +PV + G+ I ATLH Sbjct: 334 LGFTARAPRWAIAFKFPPEEKQTVLREIRIQVGRTGVLTPVAEFDPVTVAGSTIARATLH 393 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ +++R GD ++V +AG+VIP+VV ++++R D+ + P C Sbjct: 394 NIDEIR-----------RKNVREGDTIIVHKAGDVIPEVVGPVLDKRPADSVDWQMPEVC 442 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S VV + G++ A+RC + C AQ ERL H+VSR +++GLG + +D Sbjct: 443 PVCGSPVVHE----DGEV--AYRCV-SIDCPAQLKERLLHWVSRGCMDVDGLGDEIVDKM 495 Query: 495 FKS---EDPA-FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS------INK 544 + D A F DI L + +++ + + GD L + +NK Sbjct: 496 IAAGLIHDVADFYQLTVDDIAGLDTGRTYASSNSKKGVKKGDPIPVGLKTAEKIIVELNK 555 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 ++ L R +F+LGIRHVG + +A+ +LS I+ +I + +D + + Sbjct: 556 SKSQPLGRVLFALGIRHVGKSVGEVIAERFLS-------IDKLILASEED---IAECEGI 605 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK---EVSPSIGRH------------EKNVSSEIEN 649 G IA ++ +F P N+ +E L + + +G E + + Sbjct: 606 GPKIAASVKQFLAVPENLAVLERLRQAGLSLEVDLGAAHAQAAADAGVAGELADAQPLAG 665 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 V TGTL R +A + LGA VS +S+KT ++ G GSKL KA+QLGV ++ Sbjct: 666 LTFVLTGTLVNRTRDEAGAALKVLGAKVSGSVSKKTSYLVAGPKAGSKLTKAEQLGVPVL 725 Query: 710 NEEQF 714 +E+ Sbjct: 726 DEDAL 730 >gi|166364069|ref|YP_001656342.1| DNA ligase [Microcystis aeruginosa NIES-843] gi|254781371|sp|B0JTW2|DNLJ_MICAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166086442|dbj|BAG01150.1| DNA ligase [Microcystis aeruginosa NIES-843] Length = 669 Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 232/716 (32%), Positives = 375/716 (52%), Gaps = 53/716 (7%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP+E I+Q ++L + Q SY YY P I DS YD L R + I +P L Sbjct: 3 IPLE---IQQRCQQLKTELQRASY---AYYVLDDPFIPDSVYDQLYRELEDIEKRYPQLI 56 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P ++G +++ V H+IP SLE +N+E+L K+ R R+ + D Sbjct: 57 ---TPDSPTQRVGDKISSQFVSVRHNIPLYSLENAFNLEELNKWGNRWQRYVNETQDTE- 112 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEII 185 + E KIDG+ + + YE G V RGDG +GED++ +R I +IP L++ N P I+ Sbjct: 113 -YVCELKIDGSALALTYENGFLVRGVTRGDGVTGEDITPNVRTIRSIPLRLNIDNPPAIV 171 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG 244 EVRGE ++ + F +N E +ANPRNAA+G LR+L+P + R L FF + L Sbjct: 172 EVRGEAFLPLDTFDKINQEREEKRESLFANPRNAAAGTLRQLDPKIVDKRRLQFFAYTL- 230 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + Q++ L ++ +GF VN + + + YY + + R L Y DG+V Sbjct: 231 HLDDNNITNQWQSLDRLESMGFLVNPHRQLCPSLQQVAQYYQDWQEKRHQLAYMTDGVVV 290 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+++ Q +LG + PRW I+ K+ ++ T + DI I +GRTG +TP+A +EPV + Sbjct: 291 KINDLQRQNRLGFTQKFPRWAIALKYPAEEVPTVVKDIIINVGRTGAVTPMAVMEPVQVA 350 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + ATLHN D + L DIRVGD V++++AGE+IP+VV I+ R Sbjct: 351 GTTVQRATLHNSDRVAEL-----------DIRVGDTVIIRKAGEIIPEVVRILPELRPNH 399 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 PF P+ CP CQS +VR + A RC +C A + H+ SRDA +I Sbjct: 400 TSPFQMPTNCPECQSPLVRPVGE------AVTRCVNS-SCPAILRGSVVHWASRDALDIR 452 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++ + + + +D+++L++ T+I + G+ S NL ++ + Sbjct: 453 GLGEKVVILLIEQG----LVTAISDLYSLEK------TEIAKLDRMGEKSALNLITAMAQ 502 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +N S R ++ LGIR+VG+ A+ LA+ + + + A N L + + Sbjct: 503 SKNQSWSRVLYGLGIRYVGSVNAKILAESFRTVEELA----------NASVTDLASIYGI 552 Query: 605 GDIIAQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 G+ IAQ++ ++++ N V L + + + + K V TGTL ++R Sbjct: 553 GEEIAQSVYDWFRIEANRDLVAKLQAAGLQFAAAAKTTTTKATLAGKTFVITGTLPTLKR 612 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+E + + G V+ +S+KTD +++G+ GSKLEKA +LG+ + E Q L L++ Sbjct: 613 EEAKELIEKAGGKVTGSVSKKTDYLVLGEAAGSKLEKALELGITQLTEAQLLELIK 668 >gi|325696052|gb|EGD37943.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK160] Length = 652 Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 232/698 (33%), Positives = 370/698 (53%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F RI +K+ + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRI-----RKEFPQVSYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ +++ + Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 +L K+ LGF VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++L Sbjct: 229 AVLNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + +P PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D+ + R + ++EN F + S LY +I + S ER +F Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614 LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIA----------AIDSLGTVIAQSLHTY 549 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F Q I E V+ + + + +V TG LQK+ R++A+E + LG Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A VS +S+KTD+++ G + GSKL KAQ+LG++I NE+ Sbjct: 610 ANVSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRNED 647 >gi|332362528|gb|EGJ40328.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1056] Length = 652 Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 233/695 (33%), Positives = 367/695 (52%), Gaps = 55/695 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLNKIG 79 +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P +++G Sbjct: 5 MSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTHRVG 60 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G++ K H P SL+ ++ E+L F R+ +K+ + + E KIDG I Sbjct: 61 GKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRV-----RKEFPQVSYLCELKIDGLSI 115 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K F Sbjct: 116 SLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKASFD 173 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258 A+N G +ANPRNAA+G LR+L+ + R L F++ + S A Q E+L Sbjct: 174 AVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQANSQEEVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 K+ LGF VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++LG Sbjct: 232 NKLADLGFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DIR D V+V +AG++IP V+ ++ ++R + +P PS CP C Sbjct: 352 I-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCPSCD 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 400 SELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLFAQ- 451 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 + D+ + R + ++EN F + S LY +I + S ER +F LG Sbjct: 452 ------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLFGLG 502 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VEFYQ 617 IRHVG++ +R L + + +Q IA + +G +IAQ++ F Q Sbjct: 503 IRHVGSKASRILLEKFHDIPKLSQASQEEIA----------AIDSIGTVIAQSLHTYFEQ 552 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 I E V+ + + + +V TG LQK+ R++A+E + LGA V Sbjct: 553 EGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLGANV 612 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 S +S+KTD+++ G + GSKL KAQ+LG++I +E+ Sbjct: 613 SGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647 >gi|325956253|ref|YP_004286863.1| DNA ligase [Lactobacillus acidophilus 30SC] gi|325332818|gb|ADZ06726.1| DNA ligase [Lactobacillus acidophilus 30SC] Length = 667 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 223/712 (31%), Positives = 388/712 (54%), Gaps = 60/712 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++++A+KE +SL +++ D YY P + D+ YD R + FP++ P Sbjct: 4 ITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG+++ KV H IP LS+ +++ E+L++F R+ QK + + + +E Sbjct: 61 DSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRM----QKLVGHPVEYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE GK V A+ RG+G+ GEDV+A I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+ K F LN+E G +ANPRNAA+G LR+L+P R L+ F++ E Sbjct: 175 YMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEGI 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q++ +++M LGF N R+ T I + +E + R++L Y IDG+V K+D+ + Sbjct: 235 T-SQHQAIERMHELGFHTNETGRKLATLDEIFDFIDEYTAKRNSLTYGIDGIVLKIDDLN 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 294 IEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY+ + +R+GD V + +AG++IP++ ++++ +R D++P+ Sbjct: 354 ASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEPYKI 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C ++V + A RC +C AQ E + HF SR A NI GLG + Sbjct: 403 PDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++D ++ AD++ L + + + F + S+ NL +I+ ++ S+ Sbjct: 456 VKQLI-AKDLVHNV---ADLYHL------TADDLAELDHFKEKSINNLLTAIDNSKSNSV 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E I LGI HVGA+ AR +A+ + + ++ I+A D S + +G IA+ Sbjct: 506 ELLITGLGIDHVGAKAARLIAQKF-------KNLSKIMAQGVQDIAS---IDTIGMTIAE 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQKIQR 663 ++ ++ P V+ L++E+ S +G E+ + ++K +V TG L+ R Sbjct: 556 SMTTYFAQPE----VQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTR 611 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + + + LGA V+ +S+KT+ +I G + GSK KA+QLG+ ++ EE+ + Sbjct: 612 SEFTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAI 663 >gi|255533202|ref|YP_003093574.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366] gi|255346186|gb|ACU05512.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366] Length = 670 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 222/714 (31%), Positives = 381/714 (53%), Gaps = 50/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + + + +L +E++ H YY + P I D +D + A+P+ A DP Sbjct: 1 MSGSEVKTNMDALVKELNQHSYNYYVLAMPTIADYTFDKKLEELAQLELAYPEFA---DP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P K+GG++ V H P LSL +N +DLR F RI +K S + E Sbjct: 58 NSPTRKVGGDITKIFTTVPHKWPMLSLGNTYNEQDLRDFDERI----KKAIGESFEYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 K DG I++ Y+ K V A RGDG G+DV+A ++ I TIP L ++P + E+RGE Sbjct: 114 LKFDGLSISLTYDGSKLVRAVTRGDGAKGDDVTANVKTINTIPHQLKEGDVPPLFEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249 +++ + F LN E +G YANPRN A+G ++ + ++ R L+ F++ L T + Sbjct: 174 IFMHRAAFERLNKEREELGEVQYANPRNFAAGTVKMQDSKEVAKRPLDCFLYSLN-TDKN 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + K +E LQ ++ GF V + N+ + S+ ++ R L YDIDG+V KV+ + Sbjct: 233 YFKTHWESLQALKRWGFNVCEHTKLTNSIEDVRSFIKHWENERFKLSYDIDGIVIKVNSY 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q++LG A+SPRW IS+K+ ++ T L + Q+GRTG +TPVA L+PV + G + Sbjct: 293 AQQQELGFTAKSPRWAISYKYKAQEVETILDKVTYQVGRTGAVTPVANLKPVQLAGTTVK 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + I+ L D+ GD V V++ GE+IPK++++ +++R A Sbjct: 353 RATLHNANEIERL-----------DLHEGDSVFVEKGGEIIPKIMNVNLDKRKAGALKII 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 +P+ CP C + ++R K G++ A C AC Q + +++HF+SR A NI+GLG + Sbjct: 402 YPTVCPECATPLIR----KEGEV--AFYCPNDEACPPQIIGKIQHFISRKAMNIDGLGDE 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ F++ I +D++TL + + +++ + FG+ S+ N+ I + + Sbjct: 456 TIETFYQRG----LIAHISDLYTLHEKAE----ELKTLERFGEKSIENMLHGIELSKQMP 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 E+ +F LGIR+VG +A+ L A + N+ + L + +G IA Sbjct: 508 FEKVLFGLGIRYVGETVAKKL----------AYGVKNVDKLASASLEELTAIDEIGQRIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKA 666 ++I+E++ ++ + LLK + E + S ++ K V +G + R + Sbjct: 558 ESIIEYFGKAEHLHQIN-LLKSYNLKFEVAENEITLQSDKLTGKTFVISGVFENYSREEL 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ + G + + +S K + ++ GDN G SKLEKA++L V ++++E L LL+ Sbjct: 617 KDMIESNGGKILSGISAKLNYLVAGDNMGPSKLEKAKKLNVPLISQEDLLELLK 670 >gi|298492390|ref|YP_003722567.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708] gi|298234308|gb|ADI65444.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708] Length = 684 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 239/724 (33%), Positives = 383/724 (52%), Gaps = 58/724 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ S Q +EL L Q+ SY YY P++ D YD L R + +P L Sbjct: 2 MQMTSEAQLVRELRLLLQQASY---AYYVLDAPVMEDMVYDRLYRELQELETQYPYLV-- 56 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-FWQKKDDNSIF 127 P+ P ++G V H+IP SLE +N+E+L+ + R R + + Sbjct: 57 -TPDSPTQRVGERPATHFTSVRHNIPLYSLENAFNVEELQGWDQRWRRHLMAQYYPVEVD 115 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----NIPE 183 + E KIDG + + Y+ G V A RGDG GED++ +R I +IP L+ NI E Sbjct: 116 YVAELKIDGAALALTYQNGILVRGATRGDGVMGEDITQNVRTIRSIPLRLNFDGLENI-E 174 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF--- 239 +EVRGEV++ F +N++ G + +ANPRNA +G LR+L+ + R L+FF Sbjct: 175 KVEVRGEVFLPLEVFKQINEKRQKAGEQLFANPRNAVAGTLRQLDSRIVAQRQLDFFAYT 234 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 VH G A Q+E L+ ++ LGF V+ R ++ + YY + R PY Sbjct: 235 VHIPGMDDASIANTQWEALELLQRLGFRVDTNHRLCHSIREVAEYYEYWDTERLNSPYMT 294 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V K++ F LQ+QLG + PRW I+ K+A +QA TR+ +I I +GRTG LTP+A + Sbjct: 295 DGVVVKLNTFKLQEQLGFTQKFPRWAIALKYAAEQAPTRVNNITINVGRTGALTPLAEMR 354 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ ATLHN D I+ L DIR+GD V+V++AG++IP+VV +I Sbjct: 355 PVQLAGTTVSRATLHNSDRIQQL-----------DIRIGDTVIVRKAGDIIPEVVRVIKE 403 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R D PF PS CPIC VVR+ +G+ A RC +C+A ++H+VSRD Sbjct: 404 LRPSDTAPFIMPSHCPICGQPVVRE----SGE--AVTRCVSA-SCAAILKGEIEHWVSRD 456 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +I+G+G++ + E S+ +D++ L + + + ++ G S L Sbjct: 457 ALDIKGMGEKLVHQLVDKE-LVLSV---SDLYKLIKEELCALERM------GQKSAQKLV 506 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 ++I + +N R ++ LGIRHVG+ A+ L + + + + A A +D + Sbjct: 507 NAIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTEKFTTVEQLAA------AKQSD----IE 556 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFT 655 V +G IAQ++ ++++ P N + L L+ + + + ++ + K V T Sbjct: 557 GVYGIGAEIAQSVYQWFRTPANQTLISRLQDIGLQLANTAETKPVGEINPNLAGKIFVVT 616 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL ++R +A+ + + G V+ +SRKTD ++VG + G K++KAQ LG+ + E Q L Sbjct: 617 GTLPTLKRDEAKVLIQKAGGKVTDSVSRKTDFLVVGADAGFKVKKAQSLGITQLTETQLL 676 Query: 716 FLLQ 719 +L+ Sbjct: 677 KMLE 680 >gi|94971682|ref|YP_593730.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis Ellin345] gi|122986011|sp|Q1IHJ4|DNLJ_ACIBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94553732|gb|ABF43656.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis Ellin345] Length = 673 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 239/713 (33%), Positives = 364/713 (51%), Gaps = 63/713 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K+ L +++ YH+ YY P I D++YD + A+ P+L P+ P ++ Sbjct: 9 KQAEDLREKLRYHEHRYYVLDDPEISDADYDVMMNELKALEAKHPELL---TPDSPTQRV 65 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG+ KV HS P LSL+ +N E+LR + R+ K + I + E K+DG Sbjct: 66 GGKPREGFVKVAHSAPMLSLDNAYNEEELRDWARRVEELSGKAE---IEYECELKLDGLS 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS------LNIPEIIEVRGEVY 192 + +RY+ +FV A RGDG GEDV+ +R + ++P +S ++ EVRGEV Sbjct: 123 MALRYQDARFVLAVTRGDGSIGEDVTLNLRTVKSVPLGVSSATLKKTHMLGDFEVRGEVI 182 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 F +N++ G +ANPRNAA+G +R L P +IT R L+F+ + L + Sbjct: 183 FPTKSFEKMNEDREKQGLAKFANPRNAAAGAVRVLEP-NITAQRRLDFYAYFLLVDGRVH 241 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E L + LGF VN+ + ++ + ++ + R LPY+IDG+V KV+ + Sbjct: 242 IDRQSEALDTLEKLGFKVNSNRAVFKSIDDVLKFIHKKEEDREKLPYEIDGVVIKVNSTA 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L ++LG ++PRW I++K+A + A T++ DI +Q+GRTG LTPVA L+PV IGG ++ Sbjct: 302 LWQRLGFTGKAPRWAIAYKYAARAAVTQVEDILVQVGRTGKLTPVAALKPVPIGGTTVSR 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFS 429 ATLHN D I L + +GD V V+R G+VIPKVV +I ++ HP + F Sbjct: 362 ATLHNMDEIDRL-----------GLLIGDWVQVERGGDVIPKVVKVIDDKDHPRGKKKFK 410 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C VVR A HRC C A+ E + HF SR NIEG+G Sbjct: 411 MPERCPECGGHVVRTEGE------ADHRCVNA-NCPAKLRESILHFASRGVMNIEGMGDS 463 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ D ++ ADI+ L + S ++ G S N+ D I + + Sbjct: 464 LVNQLV---DRGL-VKNVADIYELDEEKLLSLERM------GKKSAQNILDEIKGTKKLP 513 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 LER I+ LGIR VG A+ LA+++ S + + VG IA Sbjct: 514 LERVIYGLGIRMVGERTAQFLAEHFGSLDGVMKATEEELLEVE----------EVGPRIA 563 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHK 665 Q+I EF+ P N V+ L + G K V E + + V TG+L R + Sbjct: 564 QSIHEFFAEPSNRELVKRL-----EAAGLQFKGVKKERGTALAGQTFVLTGSLPTYSRDE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A++ + G VS +S+KT+ ++ G+ GSKL+KA+ LGV +++E+ LL Sbjct: 619 AKKLIEDAGGKVSGSVSKKTNYVVAGEEAGSKLDKARDLGVAVIDEDALKKLL 671 >gi|327461089|gb|EGF07422.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1057] Length = 652 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 233/698 (33%), Positives = 370/698 (53%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F RI +K+ + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRI-----RKEFPQVSYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ + S A Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQADSQE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E+L K+ LGF VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++L Sbjct: 229 EVLNKLAALGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + +P PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D+ + R + ++EN F + S LY +I + S ER +F Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614 LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTY 549 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F Q I E + V+ + + + +V TG LQK+ R++A+E + LG Sbjct: 550 FEQEGSQILLAELQEEGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ Sbjct: 610 ANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647 >gi|317507336|ref|ZP_07965075.1| DNA ligase [Segniliparus rugosus ATCC BAA-974] gi|316254381|gb|EFV13712.1| DNA ligase [Segniliparus rugosus ATCC BAA-974] Length = 712 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 236/707 (33%), Positives = 358/707 (50%), Gaps = 52/707 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ H YY P + D+E+DAL R A+ P+LA + P + G Sbjct: 18 LADQVKEHQFRYYVLDSPTVTDAEFDALLRELQALEDEHPELASASSPTKLVGGAG--FT 75 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 +V H P LSL+ ++N ED + R+ + + I F E KIDG I++ Y Sbjct: 76 TDFAEVGHVEPMLSLDNVFNEEDFLAWAERV----AQGAEQPINFDCELKIDGLGISLVY 131 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEVYISKNDFL 199 E+G+ AA RGDG +GEDV+ +R I +P LSL PE++EVRGEV+ DF Sbjct: 132 ERGRLARAATRGDGRTGEDVTLNVRTIADVPHELSLAAGEEPPELLEVRGEVFFKLKDFE 191 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 ALN ++A G+ P+ANPRN+A+G LR+ NP R L HGLG T + E Sbjct: 192 ALNASLVAEGKAPFANPRNSAAGSLRQKNPAITAKRKLAMLCHGLGATGGWSPATRSEAY 251 Query: 259 QKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 QK++ G PV N + G + ++ E R + YDIDGLV KV+E SL +L Sbjct: 252 QKLKDWGLPVSPYNTTLASPEAVLGHIRHWGER---RHEVEYDIDGLVVKVEEMSLYARL 308 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I++K+ ++ T+LLDI + +GRTG +TP A +EPV + G+ + ATLHN Sbjct: 309 GNTSRAPRWAIAYKYPPQEVQTKLLDIRVNVGRTGRVTPFAFMEPVLVAGSTVGLATLHN 368 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 + +V R G + +GD V++++AG+VIP+V+ +V R + F P+ CP Sbjct: 369 ---------ASEVARKG--VLIGDTVVLRKAGDVIPEVLGPVVALRDGSEREFVMPAQCP 417 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +L P V RC C AQ ER+ H R AF+IE LG + Sbjct: 418 ECGA----ELAPAKEADVDI-RCPNARTCPAQLRERVFHVAGRGAFDIEALGYEAAVDLL 472 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--FGDVSVTN--LYDSINKRRNISLE 551 K +I D+F L + T N G G +S L ++ + ++ L Sbjct: 473 KHN----AIEDEGDLFDLDEERLLKTELFVNTSGKNAGQLSANGRKLLQNLEQAKSRDLW 528 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + +L IRHVG AR+LA + S ++ + + + +L V VG IA + Sbjct: 529 RVLVALSIRHVGPTAARALATRFGS-------VDAVFGADQE---ALAEVDGVGPTIAAS 578 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + E+++ + VE + ++ + + +V TG+L R QE + Sbjct: 579 VREWFEVDWHRSIVE-RWRAAGVTMAEDREQSPQTLAGLTIVVTGSLDGFTRESVQEAII 637 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G S +S+KT ++ G+ GSK +KA+QLGV I++E F+ LL Sbjct: 638 AHGGKASGSVSKKTSYVVAGEGGGSKRDKAEQLGVPIIDEAAFVQLL 684 >gi|306833158|ref|ZP_07466288.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338] gi|304424732|gb|EFM27868.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338] Length = 652 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 233/703 (33%), Positives = 370/703 (52%), Gaps = 67/703 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L E++ + YY +P + DSEYD L R + A P+L PN P + Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELIL---PNSPTQE 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ K + + + E KIDG Sbjct: 59 VGGLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRV-----KAEFPNASYMAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDG GE+++ ++ I IP L+ P I VRGE Y+ K Sbjct: 114 SISLVYVDGVLQVGATRGDGSVGENITENVKRIKDIPHKLAQ--PLNITVRGEAYLPKTS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255 F +N+E G+ +ANPRNAA+G LR+LN + + F + TS Q Sbjct: 172 FDKINEERRDSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLYQEVASTS---MTTQN 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++L+++ GF VN ++ I + E+ + R LPYDIDG+V KV+ ++Q++L Sbjct: 229 DVLEELSRYGFSVNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR+GD V+V +AG++IP V+ ++ ++R P P CP Sbjct: 349 VDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLHVVDSKRGKQV-PMPIPENCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S ++ + A RC L C +Q ERL HF SRDA NI GLG + F Sbjct: 397 SCGSELIHYEDE------VALRCINPL-CPSQIQERLTHFASRDAMNITGLGPSIVKKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLER 552 K+E + ADI+ L +E++L GF + S LY++I + S ++ Sbjct: 450 KAE----LVHDVADIYQL---------TVEDLLSLDGFKEKSAEKLYNAIQVSKENSADK 496 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRHVGA+ +R L + + + I+ ++A + D S+ + +G +IA+++ Sbjct: 497 LLFGLGIRHVGAKASRQLLEVF-------ETIDQLVAADAD---SIASIDGLGTVIAKSL 546 Query: 613 VEFYQNPRNICAVEAL--LKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQE 668 ++ A E L L+ + K VS +++ +V TG L+++ R++A+E Sbjct: 547 RSYFAKEE---ATELLHELENAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNEAKE 603 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 + LGA V+ +S+KTDI++ G + GSKL KAQ LG+ + +E Sbjct: 604 KLQDLGAKVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDE 646 >gi|299145622|ref|ZP_07038690.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23] gi|298516113|gb|EFI39994.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23] Length = 666 Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 237/713 (33%), Positives = 373/713 (52%), Gaps = 63/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E+ H+ YY + P I D E+D R + A P+ +D N P + Sbjct: 4 KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 117 SISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + + +R L+ +++ L + G Y Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK L Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429 D I+GL D+ +GD V V++ GE+IPK+ + DA+ F Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 F CP C S++VR G+ AAH C AC Q +++HF+SR A NI+GLG + Sbjct: 400 FIVNCPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F++ IR AD++ L + I+ + G+ S N+ I + + + Sbjct: 454 TVDMFYR----LGLIRNTADLYKL------TADDIKGLDRMGEKSAENIVTGIAQSKTVP 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER IF+LGIR VG +A+ +AK + + + Q D L+ + +G+ IA Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666 Q+I+ ++ N N V A LKE + R E+++S ++ + +V +G R + Sbjct: 554 QSILAYFANESNRELV-AKLKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEY 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +E + + G +S KT I+ GDN G +KLEKA++LG+ I++E++FL L+ Sbjct: 613 KELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665 >gi|260102794|ref|ZP_05753031.1| DNA ligase [Lactobacillus helveticus DSM 20075] gi|260083398|gb|EEW67518.1| DNA ligase [Lactobacillus helveticus DSM 20075] Length = 689 Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 229/721 (31%), Positives = 391/721 (54%), Gaps = 63/721 (8%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 Q + + +++++A+KE +SL ++ D YY P + D+ YD R + AFP+ Sbjct: 18 QEVKMAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFPE 77 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 + P+ ++GGE++ KV H IP LS+ +++ ++L++F R+ QK + Sbjct: 78 IVT---PDSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRM----QKLVGH 130 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + + +E KIDG +++ Y+ GK V A+ RG+G+ GEDV+A R I IP+VL P Sbjct: 131 PVEYNVELKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPE--PLT 188 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG- 242 IEVRGE Y+ K F LN E G +ANPRNAA+G LR+L+P R L+ F++ Sbjct: 189 IEVRGECYMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTW 248 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + EI + Q++ +++M LGF N R+ + + +E + R++L Y IDG+ Sbjct: 249 VNPPREITS--QHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGI 306 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD+ SL++QLG + PRW I++KF ++ T + DI +GRTG++TP A ++PV Sbjct: 307 VLKVDDLSLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQ 366 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G + A+LHN DY+ + +R+GD V + +AG++IP++ ++++++R Sbjct: 367 LAGTTVARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLSKRP 415 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D+ P+ P+ CP C ++V + A RC +C AQ E + HF SR A N Sbjct: 416 ADSVPYEIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMN 468 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I GLG + + ++D ++ AD++ L + + + F + S+ NL +I Sbjct: 469 IAGLGPKIVKQLI-AKDLVHNV---ADLYHL------TEDDLAQLDHFKEKSINNLLTAI 518 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + S+E I LGI HVGA+ AR +A+ + + + I++ D S + Sbjct: 519 DNSKKNSVELLITGLGIDHVGAKAARLIAQKF-------KNLEKIMSLGVQDIAS---ID 568 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVF 654 +G A+++ ++ P + L++E+ S +G E + + ++K +V Sbjct: 569 TIGMTTAESMTTYFAQPE----AQKLIEELRESGLNMDYLGADEPEEAPDNPFKDKTVVL 624 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG L+ R + + + LGA V+ +S KTD +I G + GSK KA+QLGV ++ EE+ Sbjct: 625 TGKLEHYTRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEA 684 Query: 715 L 715 + Sbjct: 685 I 685 >gi|327183069|gb|AEA31516.1| DNA ligase [Lactobacillus amylovorus GRL 1118] Length = 667 Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 223/712 (31%), Positives = 388/712 (54%), Gaps = 60/712 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++++A+KE +SL +++ D YY P + D+ YD R + FP++ P Sbjct: 4 ITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG+++ KV H IP LS+ +++ E+L++F R+ QK + + + +E Sbjct: 61 DSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRM----QKLVGHPVEYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE GK V A+ RG+G+ GEDV+A I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+ K F LN+E G +ANPRNAA+G LR+L+P R L+ F++ E Sbjct: 175 YMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEGI 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q++ +++M LGF N R+ T I + +E + R++L Y IDG+V K+D+ + Sbjct: 235 T-SQHQAIERMHELGFHTNETDRKLATLDEIFDFIDEYTAKRNSLTYGIDGIVLKIDDLN 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 294 IEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY+ + +R+GD V + +AG++IP++ ++++ +R D++P+ Sbjct: 354 ASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEPYKI 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C ++V + A RC +C AQ E + HF SR A NI GLG + Sbjct: 403 PDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++D ++ AD++ L + + + F + S+ NL +I+ ++ S+ Sbjct: 456 VKQLI-AKDLVHNV---ADLYHL------TADDLAELDHFKEKSINNLLTAIDNSKSNSV 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E I LGI HVGA+ AR +A+ + + ++ I+A D S + +G IA+ Sbjct: 506 ELLITGLGIDHVGAKAARLIAQKF-------KNLSKIMAQGVQDIAS---IDTIGMTIAE 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQKIQR 663 ++ ++ P V+ L++E+ S +G E+ + ++K +V TG L+ R Sbjct: 556 SMTTYFAQPE----VQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTR 611 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + + + LGA V+ +S+KT+ +I G + GSK KA+QLG+ ++ EE+ + Sbjct: 612 SEFTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAI 663 >gi|11513386|pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T. Filiformis gi|11513387|pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T. Filiformis Length = 667 Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 248/719 (34%), Positives = 395/719 (54%), Gaps = 69/719 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+AR+ ++ L I YH+ YY + P I D+EYD L R + FP+ + P Sbjct: 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEF---KSP 57 Query: 72 NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G F+ V H SL+ + E++ F R+ +++ + +T+ Sbjct: 58 DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERL----EREAEAPSLYTV 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G V++ GDG GE+V+ + IPTIPR L +P+ +EVRGE Sbjct: 114 EHKVDGLSV-LYYEEG--VWSTGSGDGEVGEEVTQNLLTIPTIPRRLK-GVPDRLEVRGE 169 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLG-KT 246 VY+ FL LN+E+ G K + NPRNAA+G LR+ +P + F+ GLG Sbjct: 170 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGL 229 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E K QYE+L ++ GFPV + +A G+ Y + R LP++ DG+V K+ Sbjct: 230 EESGLKSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKL 289 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +L +LG AR+PR+ +++KF ++ TRLLD+ Q+GRTG +TPV LEPV I G+ Sbjct: 290 DDLTLWGELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGS 349 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ R + Sbjct: 350 EVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGKER 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P +P CP C R+V K GK+ HRC L C A++ E ++H+ SR A +IEGL Sbjct: 399 PIRWPEACPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIEGL 449 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSIN 543 G++ ++ + +R AD++ L++ E++LG G+ S NL I Sbjct: 450 GEKLIERLLEK----GLVRDVADLYHLRK---------EDLLGLERMGEKSAQNLLRQIE 496 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + ++ LER +++LG+ VG +AR+LA+ + + + + + Sbjct: 497 ESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEE---------- 546 Query: 604 VGDIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG++ A+AI+E ++P R++ LKE S+ E+ VS + V TG L + Sbjct: 547 VGELTARAILETLKDPAFRDLV---RRLKEAGVSMESKEE-VSDLLSGLTFVLTGELSR- 601 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + + + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV ++ EE+F L++ Sbjct: 602 PREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKE 660 >gi|313890529|ref|ZP_07824157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026] gi|313121046|gb|EFR44157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026] Length = 652 Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 223/685 (32%), Positives = 372/685 (54%), Gaps = 53/685 (7%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D EYD L A+ +P+L + + P +GG + K H P Sbjct: 19 YYTNDNPTVSDQEYDKLYHELLALETEYPELIQKDSPT---QGVGGLILSGFEKYQHPYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ K + ++ + E KIDG I++ Y++GK V A R Sbjct: 76 LYSLQDAFSQEELFAFDRRV-----KLEFPTVTYVAELKIDGLSISLDYKEGKLVTGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 G+G GE+++ I+ I IP+ +L P I VRGE Y+SK+ F +N E G +A Sbjct: 131 GNGSVGENITENIKKIKDIPQ--TLKDPIDITVRGEAYMSKHSFQMINIERQESGEAEFA 188 Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+ + ++ R L F++ S+ Q +L K+ LGF VN Sbjct: 189 NPRNAAAGTLRQLDTSIVSKRNLASFLYQEASPSQEIT--QVAVLDKLSHLGFSVNKHRM 246 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 +++ I + E++ R+ LPYDIDG+V KVD+ ++Q++LG ++PRW I++KF + Sbjct: 247 VSSSMEDIWQFIQEIEPDRAQLPYDIDGIVIKVDDLAMQEELGFTVKAPRWAIAYKFPAE 306 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 + +L +D IGRTG++TP A L PV + G ++ ATLHN DYI + Sbjct: 307 EKEAEILSVDWTIGRTGVVTPTANLRPVQLAGTTVSRATLHNVDYI-----------AQK 355 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIR+GD V+V +AG++IP V+ ++ ++R + +P P+ CP CQS + + Sbjct: 356 DIRIGDTVIVYKAGDIIPAVLRVVTDKRK-NQEPILIPNLCPSCQSSLTHLEDE------ 408 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RC L C + L+HF SR+A NI GLG ++ F+++ I ADI+ L Sbjct: 409 VALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAVVEKLFRAQ----LIHDVADIYKL 463 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 R Q S + G + S L +I + S E+ +F LGIRHVG + +R L + Sbjct: 464 SREQLLS------LEGIKEKSADKLLSAIADSKEKSAEKLLFGLGIRHVGEKASRLLLET 517 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL-LKEV 632 + +I ++ N D ++ ++ +G +IA ++ +++ P + L + + Sbjct: 518 F-------GDIETLMQSNED---AIAQIDGLGHVIANSLAQYFAKPEAQQLISELKCQGL 567 Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + S+ + +V TG L+++ R +A+ + +LGA V++ +S+KTD+++ G Sbjct: 568 NLTYLGQRVDQSAPLYGLTVVLTGKLEEMGRSEAKTKLEKLGAKVTSSVSKKTDVVLAGS 627 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFL 717 + GSKL+KA+QLG+++ +E+ L L Sbjct: 628 DSGSKLDKARQLGIRVEDEQWLLDL 652 >gi|222481049|ref|YP_002567286.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239] gi|254781342|sp|B9LU22|DNLJ_HALLT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222453951|gb|ACM58216.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239] Length = 710 Score = 363 bits (932), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 238/727 (32%), Positives = 381/727 (52%), Gaps = 65/727 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+ ALS ++A ++ S L I HD YY + P+I D YD L R + + F DL Sbjct: 26 PVGALSEDEATEQASLLRAAIREHDHRYYLEADPLIPDETYDRLFTRLQELENEF-DLPT 84 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNS 125 N P ++GGE L V H P S++ + +R+F R+ + + D ++ Sbjct: 85 Q---NSPTRRVGGEPLDELATVEHVAPMRSIDNATEADAVREFDGRVRKGLDAEGFDSDA 141 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + + EPK DG + + YE G++V AA RGDG +G+DV+ +R I ++P L + P + Sbjct: 142 VEYVCEPKFDGLSVEVIYEDGEYVRAATRGDGTAGDDVTEQVRTIRSVPGKLRGDPPSRL 201 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN-FFVHGL 243 VRGE Y+ ++ F A N+ ++ G +P+ANPRNAA+G LR+L+P+ + R L+ FF L Sbjct: 202 AVRGEAYMPRDAFKAYNEALMERGEEPFANPRNAAAGTLRQLDPSVVAERPLDIFFFDVL 261 Query: 244 GKTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 G ++ A+G +E G N V + + G + Y + + + R L Sbjct: 262 GWEND--AEGDSPNRPATHWEEFDTFDAFGLRRANRVERVDDIEGALDYRDRLMADREDL 319 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 + IDG+V VD+ + ++ LG AR+PRW ++KF + A+T + I +Q+GRTG LTPV Sbjct: 320 NFAIDGVVIAVDDRANREALGATARAPRWAFAYKFPPRTATTIVEGITVQVGRTGRLTPV 379 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A L+P+++GG ++ ATLHN I+ L + VGD V + RAG+VIP V + Sbjct: 380 AELDPIDVGGVTVSRATLHNPAEIEAL-----------GVNVGDCVRIYRAGDVIPYVPE 428 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 ++ E+ + + FP CPIC + V RD G L CTGGL C AQ ++H+ Sbjct: 429 VV--EKRSEGT-YVFPETCPICDAPVERD-----GPLAF---CTGGLVCPAQLERAVEHW 477 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 RDA +IEGLG +++ +R + +L + + + G+G+ S Sbjct: 478 ARRDALDIEGLGPERVQ----------QLREAGLVESLPDLYDLAVDDLAALEGWGETSA 527 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 NL + R+ L+ F+ LGI VGA AR+LA ++ +++ I+ + D Sbjct: 528 ENLIAELAATRDPPLDDFLAGLGIPDVGATTARALAAHF-------GDLDAILDADED-- 578 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVF 654 +L V VG +A++I F N N A++ L + V P + ++ VF Sbjct: 579 -ALRAVDDVGPEVAESIRTFLDNAENRVAIDGLRERGVDPE--SVDVETGDALDGLTFVF 635 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ 713 TG+L R +AQ +V GA ++ +S TD ++ G++PG SK + A GV +++EE+ Sbjct: 636 TGSLSTT-RGEAQAHVEAHGADATSSVSGNTDYLVAGESPGRSKRDDADAEGVPVVDEEE 694 Query: 714 FLFLLQQ 720 F LL + Sbjct: 695 FAGLLAE 701 >gi|325283108|ref|YP_004255649.1| DNA ligase [Deinococcus proteolyticus MRP] gi|324314917|gb|ADY26032.1| DNA ligase [Deinococcus proteolyticus MRP] Length = 676 Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 224/703 (31%), Positives = 368/703 (52%), Gaps = 54/703 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ YY+ P I D EYDAL R+ A P+ A + P ++GG ++ Sbjct: 16 LRAELERHNRAYYEQDNPEIPDDEYDALARQVRAAEAEHPEWAAA---GSPTERVGGAVS 72 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMITIR 142 + V H P SL+ ++ ++ + R+ R D+ F FT E KIDG + + Sbjct: 73 AAFEPVDHPTPMTSLDNAFDDSEMAGWQERLARALNLPPDHGDFAFTGELKIDGLSVNLY 132 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 Y G+ +AA RG+G +GE V+A + IP IP+ L + +EVRGEVY+++ DF A N Sbjct: 133 YRDGELQWAATRGNGRTGEKVTAQLLTIPGIPQQLP-GLSGELEVRGEVYLAREDFAAYN 191 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLGKTSEIFAKGQYEMLQK 260 +G NPRN A+G LR+ +P ++TR L + LG+ + A+ Q+E+L+ Sbjct: 192 ARAEELGEPLLKNPRNGAAGALRQKDP-ELTRRRGLKAIFYSLGRRDGVPARTQWEVLEW 250 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + GFP + R + ++Y+ EM + R+ LP+D DG V K+D +Q++ G +R Sbjct: 251 LAAQGFPTSPYSRPLGSLAEALAYHAEMTAARAALPFDADGTVIKLDSLRVQEEAGFTSR 310 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PRW I++KF ++ T L I + +GRTG +TP+A L P I G+ ++ ATLHNED+++ Sbjct: 311 APRWAIAYKFPVEEVETLLESISVGVGRTGKITPLAHLSPRLIEGSTVSRATLHNEDFVR 370 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 + D+RVGD V+V+++G VIP+++ ++ + R DAQPF+FP+ CP C Sbjct: 371 DM-----------DLRVGDTVVVRKSGGVIPQIMRVLPDRRPADAQPFAFPAECPECGHT 419 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 +VR A+ AC AQQ ERL +FVSR+A +I G+G++ + Sbjct: 420 LVRSEGD-------ANTYCPNPACPAQQFERLSYFVSREAMDIRGVGERLIRQLLAE--- 469 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 +R AD + L S ++ + GD N+ + + L R I +LGI+ Sbjct: 470 -GLVRDAADFYFL------SAEQLSGLERSGDKKAANILAQLEASKTRPLWRVINALGIQ 522 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 HVG ++++LA + + + +A +GD+IA+ +V + Sbjct: 523 HVGTRVSQALAAEFGTLERLLAADAPAVAAVPG----------LGDVIAENLVAALHD-- 570 Query: 621 NICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 A++ LL+ + + R + V + + V TGTL + R + + GA V Sbjct: 571 --GAMQNLLRRLEEAGVRPPETVQERGTALSGLSFVITGTLSQ-PREYYKALLEAQGARV 627 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + ++ KT ++ G++ GSKL+KAQQLG +++E LL + Sbjct: 628 TGSVTGKTSFLLAGEDAGSKLDKAQQLGTAVLDEAGLEALLTE 670 >gi|327470726|gb|EGF16182.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK330] Length = 652 Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 231/698 (33%), Positives = 370/698 (53%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F RI +K+ + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRI-----RKEFPQVSYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKT 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ +++ + Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E+L K+ L F VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++L Sbjct: 229 EVLNKLAALDFSVNPTHILADSIEAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + +P PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEVPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESDLVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D+ + R + ++EN F + S LY +I + S ER +F Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614 LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTY 549 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F Q I E V+ + + + +V TG LQK+ R++A+E + LG Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ Sbjct: 610 ANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647 >gi|332359434|gb|EGJ37254.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK355] Length = 652 Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 231/698 (33%), Positives = 371/698 (53%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F RI +K+ + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELIVFDQRI-----RKEFPQVSYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ +++ + Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E+L K+ L F VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++L Sbjct: 229 EVLNKLADLDFSVNPTRILADSIQAVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + +P PS+CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSYCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D+ + R + ++EN F + S LY +I + S ER +F Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614 LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTY 549 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F Q I E V+ + + + +V TG LQK+ R++A+E + LG Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ Sbjct: 610 ANVSGSVSKKTDLVVTGQDAGSKLAKAQELGIEIRDED 647 >gi|332523413|ref|ZP_08399665.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176] gi|332314677|gb|EGJ27662.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176] Length = 652 Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 228/685 (33%), Positives = 363/685 (52%), Gaps = 53/685 (7%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D EYD L A+ +P+ + + P +GG + K H P Sbjct: 19 YYTNDNPTVSDQEYDKLYHELLALETEYPEFIQKDSPT---QGVGGLILSGFEKYQHPYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F RI K + + + E KIDG I++ Y+ GK V A R Sbjct: 76 LYSLQDAFSQEELVAFDRRI-----KLEFPIVTYVAELKIDGLSISLNYKGGKLVTGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+++ I+ I IP++L I I VRGE Y+SK+ F +N E G +A Sbjct: 131 GDGSVGENITENIKKIKDIPQILKEPID--ITVRGEAYMSKHSFQMINVERQENGETEFA 188 Query: 215 NPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+ + + R L F++ S+ Q +L K+ LGF VNN Sbjct: 189 NPRNAAAGTLRQLDTSIVGKRNLASFLYQEASPSQ--ESTQVAVLDKLSYLGFSVNNHRM 246 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 +++ I + E+++ R+ LPYDIDG+V KV + ++Q++LG ++PRW I++KF + Sbjct: 247 VSSSMEDIWQFIQEIEADRAQLPYDIDGIVIKVADLAMQEELGFTVKAPRWAIAYKFPAE 306 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 + +L +D IGRTG++TP A L PV + G ++ ATLHN DYI + Sbjct: 307 EKEAEILSVDWTIGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AQK 355 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIR+GD V+V +AG++IP V+ ++ ++R D +P P+ CP CQS + + Sbjct: 356 DIRIGDTVIVYKAGDIIPAVLRVVTDKRK-DQEPILIPNLCPSCQSSLTHLEDE------ 408 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RC L C + L+HF SR+A NI GLG ++ F ++ I ADI+ L Sbjct: 409 VALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAVVEKLFTAQ----LIHDVADIYRL 463 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 R Q S + G + S L +I + S E+ +F LGIRHVG + +R L + Sbjct: 464 SREQLLS------LEGIKEKSADKLLSAIADSKEKSAEKLLFGLGIRHVGEKASRLLLET 517 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-V 632 + + Q IA ++ +G +IA +I +++ P + L + + Sbjct: 518 FGDIETVMQSDEEAIA----------QIDGLGHVIANSIAQYFAKPEAQQLISELKSQGL 567 Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + S + S+ + +V TG L+++ R +A+ + LGA V++ +S+KTD+++ G Sbjct: 568 NLSYLGQRVDQSAPLYGLTVVLTGKLEEMGRSEAKTKLENLGAKVTSSVSKKTDVVLAGS 627 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFL 717 + GSKL+KA+QLG++I +E+ L L Sbjct: 628 DSGSKLDKAKQLGIRIEDEQWLLDL 652 >gi|153806306|ref|ZP_01958974.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185] gi|149130983|gb|EDM22189.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185] Length = 666 Score = 363 bits (931), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 236/711 (33%), Positives = 371/711 (52%), Gaps = 59/711 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E+ H+ YY + P I D E+D R + A P+ +D N P + Sbjct: 4 KEKIEGLRAELHRHNYNYYVLNAPEISDKEFDEKIRELQDLEQAHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDINKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 117 SISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + +R L+ +++ L + G Y Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYL-LGDNLPCDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK L Sbjct: 236 ENLQEAAKWGFKISDLTRKCKTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFC 434 D I+GL D+ +GD V V++ GE+IPK+ + + R + F + C Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGVDKDARSSMLGEKVRFITNC 404 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S++VR G+ AAH C AC Q +++HF+SR A NI+GLG + +D F Sbjct: 405 PECNSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMF 458 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLE 551 ++ I AD++ L +ENI G G+ S N+ I + + + E Sbjct: 459 YR----LGLIHNTADLYDLS---------VENIKGLDRMGEKSAENIITGIAQSKAVPFE 505 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R IF+LGIR VG +A+ +AK + NI D +LI + +G+ IAQ+ Sbjct: 506 RVIFALGIRFVGETVAKKIAKSF----------ENIDELQQADLETLISIDEIGEKIAQS 555 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQE 668 I+ ++ N N C + LK + R E+++S ++ + +V +G R + +E Sbjct: 556 ILSYFANESN-CELINRLKAAGLQLYRTEEDLSEYTDKLAGQSIVISGVFTHHSRDEYKE 614 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + + G +S KT I+ G+N G +KLEKA++LG+ I++E++FL L+ Sbjct: 615 LIEKNGGKNVGSISAKTSFILAGENMGPAKLEKAKKLGITILSEDEFLKLI 665 >gi|315037778|ref|YP_004031346.1| DNA ligase [Lactobacillus amylovorus GRL 1112] gi|312275911|gb|ADQ58551.1| DNA ligase [Lactobacillus amylovorus GRL 1112] Length = 667 Score = 363 bits (931), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 223/712 (31%), Positives = 388/712 (54%), Gaps = 60/712 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++++A+KE +SL +++ D YY P + D+ YD R + FP++ P Sbjct: 4 ITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG+++ KV H IP LS+ +++ E+L++F R+ QK + + + +E Sbjct: 61 DSITQRVGGQIDNDFTKVEHPIPMLSMGDVFSKEELKEFDQRM----QKLVGHPVEYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE GK V A+ RG+G+ GEDV+A I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAHYIADIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+ K F LN+E G +ANPRNAA+G LR+L+P R L+ F++ E Sbjct: 175 YMGKEAFAKLNEEREEQGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEGI 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q++ +++M LGF N R+ T I + +E + R++L Y IDG+V K+D+ + Sbjct: 235 T-SQHQAIERMHELGFHTNETGRKLATLDEIFDFIDEYTAKRNSLTYVIDGIVLKIDDLN 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 294 IEQELGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY+ + +R+GD V + +AG++IP++ ++++ +R D++P+ Sbjct: 354 ASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLAKRPADSEPYKI 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C ++V + A RC +C AQ E + HF SR A NI GLG + Sbjct: 403 PDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++D ++ AD++ L + + + F + S+ NL +I+ ++ S+ Sbjct: 456 VKQLI-AKDLVHNV---ADLYHL------TADDLAELDHFKEKSINNLLTAIDNSKSNSV 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E I LGI HVGA+ AR +A+ + + ++ I+A D S + +G IA+ Sbjct: 506 ELLITGLGIDHVGAKAARLIAQKF-------KNLSKIMAQGVQDIAS---IDTIGMTIAE 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQKIQR 663 ++ ++ P V+ L++E+ S +G E+ + ++K +V TG L+ R Sbjct: 556 SMTTYFAQPE----VQKLIEELRESGLNMDYLGEDEEAAPDNPFKDKTVVLTGKLEHYTR 611 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + + + LGA V+ +S+KT+ +I G + GSK KA+QLG+ ++ EE+ + Sbjct: 612 SEFTKKLQALGAKVTGSVSKKTNYVIYGKDAGSKYNKAEQLGIPLLTEEEAI 663 >gi|149275978|ref|ZP_01882123.1| DNA ligase [Pedobacter sp. BAL39] gi|149233406|gb|EDM38780.1| DNA ligase [Pedobacter sp. BAL39] Length = 671 Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 222/719 (30%), Positives = 381/719 (52%), Gaps = 62/719 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + + ++ +L +E++ H YY + P I D E+D + + +P+ A DP Sbjct: 1 MSKNEVKDKMDALVKELNQHTYDYYVLAMPTIADYEFDRKLAALNKLEQQYPEYA---DP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG++ + V H P LSL +N +DLR F R+ +K + + E Sbjct: 58 NSPTQQVGGDITKNFTTVAHKWPMLSLGNTYNEQDLRDFDERV----RKAIGDQFQYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGE 190 K DG I++ YE K + A RGDG G+DV+ ++ I IP LS IP + E+RGE Sbjct: 114 LKFDGVSISLTYEDQKLLRAVTRGDGTKGDDVTTNVKTIRNIPHKLSSGTIPSLFEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249 + + + F LN E +G YANPRN A+G ++ + ++ R L+ F++ Sbjct: 174 ILMHRAAFERLNKEREELGEVTYANPRNFAAGTVKMQDSREVAKRPLDCFLYYFNTDKSP 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 F K +E L+ ++ GF V+ R NT ++ + + + R L YDIDG+V KV+ + Sbjct: 234 F-KTHWESLETLKSWGFHVSEHSRLGNTIEEVLEFISYWEKERFNLSYDIDGIVIKVNSY 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q +LG A+SPRW IS+K+ ++ T L + Q+GRTG +TPVA L+PV + G + Sbjct: 293 AQQAELGFTAKSPRWAISYKYKAQEVETILERVTYQVGRTGAVTPVANLKPVLLAGTTVK 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + I+ L D+ GD V V++ GE+IPK++++ +++R A Sbjct: 353 RATLHNANEIERL-----------DLHEGDSVFVEKGGEIIPKIINVNLDKRENGAVKII 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 +P+ CP C + ++R K G++ A+ C AC Q + +++HF+ R A +I+GLG + Sbjct: 402 YPTQCPECGTTLIR----KEGEV--AYYCPNDEACPPQIVGKIQHFIGRKAMDIDGLGDE 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ ++ ++ +D++ L +R T +++ I FG+ S+ N+ I + + Sbjct: 456 TIETCYQHG----LLKHISDLYVLHQR----TEELKAIDRFGERSIENMLKGIESSKQMP 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL------SLIRVPL 603 + +F LGIR+VG +AR LA +A N D L +L + Sbjct: 508 FAKVLFGLGIRYVGETVARKLA----------------VATKNIDTLATASLETLTAIDE 551 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQK 660 +G IA++I+E++ P +I +E LLK EK + S ++ K V +G + Sbjct: 552 IGQRIAESIIEYFAKPEHIQQIE-LLKSYGLQFESDEKEIELQSDKLTGKTFVISGVFEN 610 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 R + +E + G + + +S K + ++ GDN G SKLEKA++L + ++++++ L LL Sbjct: 611 YSREELKEIIELNGGKILSSISAKLNFLVAGDNMGPSKLEKAKKLNIPLISQDELLALL 669 >gi|110637718|ref|YP_677925.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406] gi|123354667|sp|Q11VI1|DNLJ_CYTH3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110280399|gb|ABG58585.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406] Length = 670 Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 222/709 (31%), Positives = 374/709 (52%), Gaps = 51/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QA + L + + YH++ YYQ I D E+D L + + FP +++ P+ Sbjct: 5 QALARIEELNKVLHYHNNLYYQKDTTEISDFEFDTLLQELIELEKQFPLYLKADSPS--- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + ++H P LSL ++ E++R+F R+ QK +++ + E K D Sbjct: 62 QRVGGTVTKEFASISHKYPMLSLSNTYSEEEIREFDERV----QKAVGHAVEYVCEMKFD 117 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G I+I Y+ G A RGDG G+DV+ I+ I +IP ++ S PE EVRGEVY+ Sbjct: 118 GVAISITYKNGMIAQAVTRGDGVRGDDVTNNIKTIKSIPLKIQSATFPEEFEVRGEVYLP 177 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 F +N E +G ANPRNAASG ++ + + R L+ F++ L + S Sbjct: 178 YEMFERINQEREDIGEAALANPRNAASGTVKMQDSGIVAKRALDCFIYSLLQDSNK-QPT 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 L +++ GF V++ + I+ Y N R LP DG+V KV++ LQ Sbjct: 237 HAAALAQLKEWGFRVSDSYKVCKNVDEIIQYINHWSEERFKLPLATDGIVIKVNDLRLQS 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++KF ++AST +L ++ Q+GRTG +TPVA L PV++ G + ATL Sbjct: 297 ELGMTAKSPRWAIAYKFKAEEASTPILSVEYQVGRTGAVTPVANLAPVHLAGTTVKRATL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN + ++ L ++ +GD V V++ GE+IPK+ + V++R +Q F Sbjct: 357 HNANEMERL-----------NLHIGDTVFVEKGGEIIPKITRVDVSKRIAGSQMIPFIQN 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C ++++R AA C C+ Q +++HF+ R A NI+G+G + ++ Sbjct: 406 CPVCDTKLIRIEGE------AAWYCPNDKGCAPQITGKIEHFIQRKAMNIDGIGSETIEL 459 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ++ + IR AD++TL Q + FG+ SVTN+ + I + + Sbjct: 460 LYQKK----LIRNVADLYTLTYDQLIQLDR------FGEKSVTNVLNGIEASKQTPFKSV 509 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F++GIR+VG+ +A LA ++ S I A L++ P +G IAQ+I+ Sbjct: 510 LFAIGIRYVGSTVAEKLALHFKS----------INALEKASIEELLQAPEIGIKIAQSII 559 Query: 614 EFYQNPRNICAVEALLKE-VSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 E++ N+ +E L K V + HE K S + K V +G + +R + ++ + Sbjct: 560 EWFSVDTNVQLIEDLKKAGVKLELSEHEILKPESDKFAGKSFVISGVFENYERDELKDLI 619 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + G +S+ ++ K + ++ G+N G +KLEKAQ+L + I++E +F+ LL Sbjct: 620 LKNGGKISSGITGKLNYLVAGENMGPAKLEKAQKLNITILSEAEFISLL 668 >gi|194307280|gb|ACF42137.1| DNA ligase [Mycobacterium lepromatosis] Length = 686 Score = 362 bits (930), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 234/711 (32%), Positives = 363/711 (51%), Gaps = 49/711 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ L +E+ H YY PII D+E+DAL R + P+L P+ P I Sbjct: 7 RQWRKLAEEVREHQFRYYVRDAPIISDAEFDALLGRLTVLEEQHPEL---RTPDSPTQLI 63 Query: 79 GGEMNLSLFKVT-HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + F T H LSL+ + ++L +ITRI R + N + E K+DG Sbjct: 64 GGAGFTTDFVATEHLERMLSLDNASSEDELDAWITRIRR----EIGNDAHYLCELKVDGV 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 +++ Y G A RGDGH+GEDV+ R I +P L+++ IPE++EVRGEV+ Sbjct: 120 ALSLVYRNGLLNRATTRGDGHTGEDVTLNARTIEDVPERLTVSDIYPIPEVLEVRGEVFF 179 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG Sbjct: 180 RVTDFQALNTSLVEEGKNPFANPRNSAAGSLRQKDPAVTAHRTLRMICHGLGHIEGFRPA 239 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ +R G PV++ N G+ ++Y+ E R + ++IDG+V K+DE Sbjct: 240 TQHQAYLALRAWGLPVSDHTTLVNDIAGVQRRIAYWAEH---RHEVDHEIDGIVVKIDEL 296 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + Sbjct: 297 ALQRRLGSTSRAPRWAIAYKYLPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVG 356 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN +K R G + +GD V++++AGEVIP++V +V+ R F Sbjct: 357 QATLHNASEVK---------RKG--VLIGDTVVIRKAGEVIPEIVGPVVDLRDGSESEFV 405 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + T RC +C Q ER+ H SR +I+GLG + Sbjct: 406 MPTTCPECGTTLAPEKEGDTDI-----RCPNARSCPGQLRERVFHVASRSVLDIQGLGYE 460 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ I D+FTL T N G + L +++K + Sbjct: 461 AGVALLAAQ----VITSEGDLFTLTEDDLLRTELFRNKAGKLSANGKRLLVNVDKAKTAP 516 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG AR+LA + S I+ I+A + + L V VG IA Sbjct: 517 LWRVLVALSIRHVGPTAARALAAEFGS-------IDAILAASPE---QLAAVEGVGAAIA 566 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 A+ E++ + V+ + + +V E +V TG+L R A+E Sbjct: 567 AAVTEWFAVDWHRAIVDKWRAAGVRMVDERDTSVPPTCEGLTIVVTGSLAGFSRDDAKEA 626 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G V+ +S+K ++VGD PGSK +KA +LGV I++E+ F LL+Q Sbjct: 627 IVARGGKVAGAVSKKIAYVVVGDLPGSKYDKAIELGVPILDEDGFRLLLEQ 677 >gi|323467080|gb|ADX70767.1| DNA ligase [Lactobacillus helveticus H10] Length = 689 Score = 362 bits (930), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 229/721 (31%), Positives = 391/721 (54%), Gaps = 63/721 (8%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 Q + + +++++A+KE +SL ++ D YY P + D+ YD R + AFP+ Sbjct: 18 QEVKMAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFPE 77 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 + P+ ++GGE++ KV H IP LS+ +++ ++L++F R+ QK + Sbjct: 78 IVT---PDSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRM----QKLVGH 130 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + + +E KIDG +++ Y+ GK V A+ RG+G+ GEDV+A R I IP+VL P Sbjct: 131 PVEYNVELKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPE--PLT 188 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG- 242 IEVRGE Y+ K F LN E G +ANPRNAA+G LR+L+P R L+ F++ Sbjct: 189 IEVRGECYMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTW 248 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + EI + Q++ +++M LGF N R+ + + +E + R++L Y IDG+ Sbjct: 249 VNPPREITS--QHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGI 306 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KVD+ SL++QLG + PRW I++KF ++ T + DI +GRTG++TP A + PV Sbjct: 307 VLKVDDLSLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMYPVQ 366 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G + A+LHN DY+ + +R+GD V + +AG++IP++ ++++++R Sbjct: 367 LAGTTVARASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLSKRP 415 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 D+ P+ P+ CP C ++V + A RC +C AQ E + HF SR A N Sbjct: 416 ADSVPYEIPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMN 468 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I GLG + + ++D ++ AD++ L + + + F + S+ NL +I Sbjct: 469 IAGLGPKIVKQLI-AKDLVHNV---ADLYHL------TEDDLAQLDHFKEKSINNLLTAI 518 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + S+E I LGI HVGA+ AR +A+ + + + I++ D S + Sbjct: 519 DNSKKNSVELLITGLGIDHVGAKAARLIAQKF-------KNLEKIMSLGVQDIAS---ID 568 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVF 654 +G A+++ ++ P + L++E+ S +G E+ + + ++K +V Sbjct: 569 TIGMATAESMTTYFAQPE----AQKLIEELRESGLNMDYLGADEQEEAPDNPFKDKTVVL 624 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG L+ R + + + LGA V+ +S KTD +I G + GSK KA+QLGV ++ EE+ Sbjct: 625 TGKLEHYTRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEA 684 Query: 715 L 715 + Sbjct: 685 I 685 >gi|261377933|ref|ZP_05982506.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685] gi|269145793|gb|EEZ72211.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685] Length = 831 Score = 362 bits (930), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 238/672 (35%), Positives = 359/672 (53%), Gaps = 109/672 (16%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 22 YYTLDAPSVPDAEYDKLFRELEALELNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 78 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + + +EPK DG I++ Y G Sbjct: 79 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL 138 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV+ ++ + IP R+ N PE+IEVRGEV + K DF ALN Sbjct: 139 VQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 198 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 199 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFEAEEHIQELAYFQEL 257 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y +M+ R LPY+IDG+V KV+ + Q++LG +R+ Sbjct: 258 GFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPELPYEIDGMVVKVNSLAQQRELGFISRA 315 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D Sbjct: 316 PRWAIAHKFPAEEALTVVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 371 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 372 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVMGLSDGIKYQQDD 424 Query: 423 --------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 425 LFAEAPAANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQR 478 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTSTT- 522 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++T+ Sbjct: 479 AQGLIHFASRKAMDIDGLGQKQIEQLVGQD----LVRHFADLYRLDIPTLQKMKETADKG 534 Query: 523 KIENILG-----FGDVS--------------VTNLYDSINKRRNISLERFIFSLGIRHVG 563 EN G GD+S N+ I + L RF+F+LGIRHVG Sbjct: 535 SSENEDGDAETVSGDLSERNTQNGKKQPTKWAENILAGIEASKTPELSRFLFALGIRHVG 594 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRNI 622 A++LA+ + S ++ + I+A +P +G ++A +I F+ Q+ + Sbjct: 595 ERTAKTLAQAFGSLEHVRRAPEPILAC----------LPDIGTVVAHSIAYFFAQDAQQA 644 Query: 623 CAVEALLKEVSP 634 E L V+P Sbjct: 645 MIDELLAAGVAP 656 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 45/72 (62%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K V TGTL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA LGV Sbjct: 759 VAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGV 818 Query: 707 KIMNEEQFLFLL 718 +++E + L LL Sbjct: 819 SVLSEAELLTLL 830 >gi|149372321|ref|ZP_01891509.1| putative DNA ligase [unidentified eubacterium SCB49] gi|149354711|gb|EDM43274.1| putative DNA ligase [unidentified eubacterium SCB49] Length = 677 Score = 362 bits (930), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 235/726 (32%), Positives = 374/726 (51%), Gaps = 70/726 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IEQ KEL +E+ ++ YY + D E+D + + A P+ D Sbjct: 1 MNIEQQIKEL---REELRAYNYQYYVLDNATVSDFEFDQKLKELQQLEDAHPEYF---DA 54 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GGE+ + V H+ SL+ ++ EDL + TR+ +K D + + E Sbjct: 55 NSPTQRVGGEITKNFETVKHNFRMYSLDNSYSKEDLEDWETRV----KKMVDGDVNYACE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG +++ YEKG V A RGDG G++V+A ++ I ++P L + PE+ E+RGE+ Sbjct: 111 LKYDGASMSLTYEKGVLVRAVTRGDGFQGDNVTANVKTIKSVPLQLKGDYPELFEIRGEI 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 + + F A+N+E IA G +PY NPRN ASG L+ + ++ R L+ ++ L +++ Sbjct: 171 VLPFDGFNAMNEERIAAGEEPYRNPRNTASGSLKLQDSAEVAKRPLDCLLYSL-VANKLP 229 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q E L+K GF V + A++ ++ + N R LPY+ DG+V KV+ Sbjct: 230 VATQMEGLKKASDWGFKVPPVAKLASSIEEVLEFVNYWDKHRHELPYETDGVVVKVNSLQ 289 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG ++SPRW +++KF +Q ST L +I Q+GRTG +TPVA L+PV + G + Sbjct: 290 QQEELGYTSKSPRWAMAYKFKAEQVSTVLEEITYQVGRTGAITPVANLQPVELAGTTVKR 349 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN D I+ L DIR D V V++ GE+IPK++ + + ER D+QP + Sbjct: 350 ASLHNADQIEKL-----------DIRERDTVYVEKGGEIIPKIIGVNLEERPEDSQPTKY 398 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 S CP C + +VR A H C CS Q + R++HF+SR A +IEGLG + Sbjct: 399 ISQCPDCHTALVRTEGD------AKHYCPNEEGCSTQIIGRIQHFISRKAMDIEGLGGET 452 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRN 547 + I+ AD++ L +E+IL S NL + ++K + Sbjct: 453 VALLVNE----GVIKNYADLYAL---------TVEDILPLERMAQKSAENLVEGVSKSKE 499 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 I ER +F+LGIR VG +A+ LAK++ S I A + LI V +GD Sbjct: 500 IPFERVLFALGIRFVGETVAKKLAKHFKS----------IDALMEASFEQLIAVDEIGDR 549 Query: 608 IAQAIVEFY------------QNPRNICAVEALLK-EVSPSIGRHE-KNVSSEIENKKLV 653 IA++++ F+ Q + VE L V +I E + + V Sbjct: 550 IAESVLAFFKIETQDLFSEIKQGETHREVVERLRAYGVQLAISEEELAGQTDTLAGSTFV 609 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEE 712 +G K+ R + ++ + G VS +S+KT ++ GD G SK KA++LGV I+ E+ Sbjct: 610 VSGVFAKVSRTELKKLIEDNGGKVSGSISKKTSYVVAGDKMGPSKRTKAEELGVVIITED 669 Query: 713 QFLFLL 718 FL ++ Sbjct: 670 DFLAMI 675 >gi|189347498|ref|YP_001944027.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245] gi|254781283|sp|B3EFT6|DNLJ_CHLL2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189341645|gb|ACD91048.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245] Length = 673 Score = 362 bits (930), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 223/714 (31%), Positives = 370/714 (51%), Gaps = 58/714 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A E++ L +EI H+ YY ++P+I D E+D L + A+ PDL P+ P Sbjct: 6 AADEIARLRKEIERHNYLYYVEAEPVISDYEFDRLLEQLIALERLHPDLV---TPDSPSL 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ S V H P LSL +++E++ F R+ R + E K DG Sbjct: 63 RVGGQITRSFPSVRHREPMLSLSNTYSMEEVADFYRRVRRLLLDEGIGEQEMVAELKFDG 122 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-------IEVRG 189 +++ Y G V A RGDG G+D++ +R I +IP L + E IEVRG Sbjct: 123 VAVSLIYRNGLLVQGATRGDGVQGDDITVNLRTISSIPLRLETSASETLSGSDREIEVRG 182 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGK 245 EV++ K DF LN+ R +ANPRNA +G L+ + ++ R ++ +F+ G+G Sbjct: 183 EVFMPKEDFDRLNEGRPEEDR--FANPRNATAGTLKLQDSAEVARRRMTFVAYFLKGIGD 240 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 ++ L+ + LGF + R H I + E R LPY+ DG+V K Sbjct: 241 QH----MPHFDRLKLLGKLGFFTGDHYRLCPELHDIERFIGEWSEKRWKLPYETDGVVLK 296 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 ++ L ++LG ++SPRW I++K+ +QA T LL + Q+GR G +TPVA L PV + G Sbjct: 297 LNAVWLWERLGATSKSPRWAIAYKYPAQQAITELLGVVFQVGRLGTITPVAELRPVKLAG 356 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ++ +TLHN D I+ L +RV DRV+V+++GEVIPK++ + + + Sbjct: 357 STVSRSTLHNFDEIERL-----------GVRVHDRVVVEKSGEVIPKIIRVAEDSGSLFS 405 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P P CP C + + R N + C C AQ R+ H+ SR+A +I+ Sbjct: 406 VPIVVPERCPSCDTPLTRPENE------VSWYCPNEEGCPAQIRGRMLHYASRNAMDIQS 459 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +D ++ P D+++LQ Q +E + G S NL +I + Sbjct: 460 LGIALVDQLVGRG----LVKDPGDLYSLQLPQ------LEPLERMGTKSSINLVRAIEES 509 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R S +R +++LGIRHVG AR LA Y + + + +A VP +G Sbjct: 510 RTKSYDRLLYALGIRHVGQATARELAGAYPYFASLHEAGEQELAE----------VPDIG 559 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 ++A++I++F+ P ++ L + P G+ ++ V++ E + ++FTG L++ R Sbjct: 560 PVVARSIIDFFSKPWVQAMLDKLEQAGLPMRAGKEKEQVNNNFEGQSVIFTGGLERHVRQ 619 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+E V + G + + +S+KT +++ G GSKLE+A +LGV+++ E++F +L Sbjct: 620 EAEEMVRERGGRIVSSVSKKTSLVVAGKEAGSKLERALKLGVRVIGEDEFEAML 673 >gi|254670337|emb|CBA05747.1| DNA ligase [Neisseria meningitidis alpha153] Length = 841 Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 230/661 (34%), Positives = 349/661 (52%), Gaps = 103/661 (15%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALERNHPEL---KLPDSPTQRVGGEPLAGFAEVRHEVP 100 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F Q+ D + +EPK DG I++ Y G Sbjct: 101 MLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL 160 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV + K DF ALN Sbjct: 161 VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQAE 220 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 221 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYFQAL 279 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + NG F I +++Y M+ R LPY+IDG+V KV+ + Q++LG +R+ Sbjct: 280 GFSLPNG--NFGCFKNIDEVLAFYERMQQKRPKLPYEIDGMVVKVNSLAQQRELGFISRA 337 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D Sbjct: 338 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQD---- 393 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------------------- 422 +V R +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 394 -----EVSR--KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDL 446 Query: 423 -------------PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ Sbjct: 447 FAEAPAANQTQSVPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRA 500 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTSTTKI 524 + L HF SR A +I+GLG++Q++ + +R AD++ TLQ+ ++T+ + Sbjct: 501 QGLIHFASRKAMDIDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETTDKTV 556 Query: 525 ---ENILGFGDVS-------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 E + G N+ I + L RF+F+LGIRHVG A+ Sbjct: 557 AESEQMPSEGSSVGASGKHKKPPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAK 616 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 +LA+ + + + + ++A +P +G ++A +I F+ ++ L Sbjct: 617 TLAQAFGTLERVRRAPEPVLAC----------LPDIGTVVAHSIAHFFAQAEQQAMIDEL 666 Query: 629 L 629 L Sbjct: 667 L 667 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 47/77 (61%) Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 ++ + K V TGTL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA Sbjct: 764 GINEAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKA 823 Query: 702 QQLGVKIMNEEQFLFLL 718 LGV +++E + L LL Sbjct: 824 NALGVSVLSEAELLTLL 840 >gi|163788595|ref|ZP_02183040.1| putative DNA ligase [Flavobacteriales bacterium ALC-1] gi|159875832|gb|EDP69891.1| putative DNA ligase [Flavobacteriales bacterium ALC-1] Length = 664 Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 231/706 (32%), Positives = 373/706 (52%), Gaps = 55/706 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L +E+ H+ YY I D E+D + A+ A P+ DPN P Sbjct: 3 TKQKIEILREELRQHNYNYYILDNATISDYEFDIKLKELQALEEANPEFF---DPNSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GGE+ + H SL+ ++ EDL + TRI +K D + + E K DG Sbjct: 60 RVGGEITKNFNTTVHDFRMYSLDNSYSKEDLLDWETRI----KKMVDGEVQYNCELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + YE GK V A RGDG G++V+A ++ I T+P L + PE ++RGE+ + Sbjct: 116 ASMNLTYENGKLVRAVTRGDGVQGDEVTANVKTIKTVPLQLKGDFPERFDIRGEIILPIE 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 FL +N+E IA +PY NPRN ASG L+ + ++ R L ++ + K + + + Q+ Sbjct: 176 GFLKMNEERIANDEEPYRNPRNTASGSLKLQDSAEVAKRPLECLLYSI-KGNNLNIQSQF 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+K R GF V + N+ ++ Y R LPY+IDG+V KV++ Q +L Sbjct: 235 EGLKKAREWGFKVPKEAKLVNSIDAVLDYVEYWDEHRHNLPYEIDGVVVKVNDLYQQDEL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A++PRW +++KF +Q STRL +I Q+GRTG +TPVA LEPV + G ++ A+LHN Sbjct: 295 GFTAKAPRWAMAYKFKAEQVSTRLNEITYQVGRTGAITPVANLEPVQLAGTIVKRASLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L DIR GD V V++ GE+IPK++ + +++R D++P + S CP Sbjct: 355 ADQIEKL-----------DIREGDEVFVEKGGEIIPKIIAVDLSKRPEDSKPTVYISCCP 403 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C++ + R A H C C Q + R++HF+SR A +IEGLG + + Sbjct: 404 ECETTLERIEGE------AKHYCPNYNGCPPQVVGRIQHFISRKAMDIEGLGGETVALLV 457 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 K I+ +D++ L Q ++ + S NL + + + I ER +F Sbjct: 458 KE----GLIKDYSDLYELTVAQVIPLERM------AEKSAENLINGVEVSKQIPFERVLF 507 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR+VG +A+ LAK+Y S I+ ++ L LI V +G+ IA+++VEF Sbjct: 508 GLGIRYVGETVAKKLAKHYKS-------IDALMFATT---LDLIAVDEIGERIAESVVEF 557 Query: 616 YQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + N +E L E+S N + +++ +V +G + I R++ ++ + Sbjct: 558 FSLGENRKIIERLKSFGVQLEISAD---KLANQTDKLKGFSIVVSGVFETISRNELKKLI 614 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715 GA VS+ +S KT ++ GD G SK KA+ L + I+ E++FL Sbjct: 615 EDNGAKVSSSISSKTSYLVAGDKMGPSKRTKAESLNIPIITEQEFL 660 >gi|38233671|ref|NP_939438.1| NAD-dependent DNA ligase LigA [Corynebacterium diphtheriae NCTC 13129] gi|81401524|sp|Q6NHQ4|DNLJ_CORDI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|38199932|emb|CAE49600.1| DNA ligase [Corynebacterium diphtheriae] Length = 677 Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 233/716 (32%), Positives = 376/716 (52%), Gaps = 67/716 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ L +++ +H D YY ++ P I D+E+D L R+ + P+LA P P + Sbjct: 9 RRQWDDLAEQVRHHRDAYYNHT-PEISDAEFDQLFRQLQQLEQEHPELAV---PESPTLR 64 Query: 78 IGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G + S F V H LSL+ +++ +L ++ R S + E KIDG Sbjct: 65 VGAPVEQSSFDNVEHLERMLSLDNVFDAAELDDWLQRT---------PSATYLTELKIDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVY 192 I + Y G+ AA RGDG GEDV+A + I IP L + +PE++E+RGEV+ Sbjct: 116 LSIDLVYRSGRLERAATRGDGRVGEDVTANAKVIEDIPHRLQHSDAYPVPELVEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFA 251 I+ DF +N++ G KP+ANPRNAA+G LR+ + + R L HG+G + A Sbjct: 176 IAVEDFALVNEQRQKEGGKPFANPRNAAAGSLRQKDTEAVRKRRLKMICHGIGASEGFEA 235 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q++ + + G PV+ ++ ++ + R +++DGLV K+D F+ Sbjct: 236 DTQFDAYKALEAWGLPVSPYTKRVHSAQEVQERVTYWAQHRHDATHEMDGLVIKIDSFAE 295 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG AR+PRW I++K+ ++ +T+LLDI + +GRTG +TP A ++PV + G+ + A Sbjct: 296 QRALGSTARAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMDPVFVAGSTVEMA 355 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+ +K R G + +GD V++++AGEVIP+V+ +V +R + F FP Sbjct: 356 TLHNQTEVK---------RKG--VLIGDTVVIRKAGEVIPEVLGPVVEKRDGSEREFIFP 404 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C +R L P+ + A RC +C AQ RL + R AF+IE LG++ Sbjct: 405 TLCPACGTR----LAPQK-EDDADWRCPNSQSCPAQLSSRLTYLAGRGAFDIEALGEKGA 459 Query: 492 DFFFKSEDPAFSIRI-PADIFTLQ----RRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 + S + I A +F L +R + TTK + G+ + NL + + Sbjct: 460 EDLIAS-----GVLIDEAQLFNLTEDDLKRTKVYTTKAGALNATGEKLLANLESA----K 510 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVG 605 + L R + +L IRHVG AR+LA Y S + A ++ +I VG Sbjct: 511 HTDLWRVLVALSIRHVGPTAARALAVRYRSLEALRAADVEDIANTEG-----------VG 559 Query: 606 DIIAQAIVEFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQ 662 IIAQ+ +++ P RNI V A + ++ E ++ ++ E +V TG+L Sbjct: 560 AIIAQSFAQWFDVPWHRNIVEVWA---DAGVTMADSEADIPDQVLEGLTIVVTGSLVDFS 616 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R A+E + G S +S+KT ++VG+N GSK KA+ LG++I+NE++F LL Sbjct: 617 RDSAKEAIVSRGGKASGSVSKKTSYVVVGENAGSKETKARDLGLRILNEDEFKQLL 672 >gi|56751245|ref|YP_171946.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 6301] gi|81299088|ref|YP_399296.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 7942] gi|81596046|sp|Q5N2P4|DNLJ_SYNP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123728245|sp|Q31RL0|DNLJ_SYNE7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56686204|dbj|BAD79426.1| DNA ligase [Synechococcus elongatus PCC 6301] gi|81167969|gb|ABB56309.1| DNA ligase, NAD-dependent [Synechococcus elongatus PCC 7942] Length = 679 Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 237/713 (33%), Positives = 356/713 (49%), Gaps = 53/713 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I Q EL L Q+ SY YY +P++ D+ YD L R + P L P+ Sbjct: 12 AIAQRASELRQLLQQASY---AYYVLDQPVMEDAVYDRLYRELQDLEQQHPSLI---TPD 65 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN---SIFFT 129 P ++G + V H IP SLE ++ E+LR + R W+K + + Sbjct: 66 SPTQRVGEQPATGFESVQHRIPLYSLENAFDAEELRSWDQR----WRKLAPDVPADAGYV 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188 E KIDG I + YE G V A RGDG GE+++A +R I +IP R+ + PE +EVR Sbjct: 122 CELKIDGAAIALSYENGLLVRGATRGDGTRGEEITANLRTIKSIPLRLQTDQPPEWLEVR 181 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247 GE ++S F LN E G +ANPRNAA+G LR+L+P + R L+FF + + + Sbjct: 182 GEAFLSLTRFKQLNTEREKHGEALFANPRNAAAGTLRQLDPRIVAERQLDFFAYSIQGPN 241 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Q L ++ LGF V + T + Y+++ + R LPY DG+V K+ Sbjct: 242 DWANLDQAASLDCLQSLGFRVEPHRQTCPTLAEVEQYFSDWDARRRDLPYLTDGVVVKLQ 301 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +LG + PRW I+ K+ +A T+L + +Q+GRTG LTPVA PV + G Sbjct: 302 SRRLQDELGFTQKFPRWAIALKYPADEAPTQLQHVTVQVGRTGALTPVAEFSPVALAGTT 361 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN D ++ L D+ +GD ++V++AGE+IP+VV ++ + R DA+P Sbjct: 362 VSRATLHNADRLREL-----------DLHIGDTIVVRKAGEIIPEVVRVLTDLRPADAKP 410 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP C V R + A RC C A L H+ SRDA +IEGLG Sbjct: 411 VVLPEKCPECGQPVQRP------EEEAVTRCVNS-TCPAIVRGALTHWASRDALDIEGLG 463 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ +D + AD++ L + ++ FG+ S NL +I K R Sbjct: 464 EKLVDQLVSK----GLVNAIADLYRL------DAPLLASLERFGEKSAQNLVQAIAKSRQ 513 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 R ++ LGIRHVG+ A++LA + S + AQ + +A V +G Sbjct: 514 QPWSRVLYGLGIRHVGSVNAKNLAATFTSAEALAQATPDELAA----------VYGIGSE 563 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IA A+ +++ N + AL + G S + + V TGTL + R++A+ Sbjct: 564 IADAVHQWFTVATNQNLIAALEQAGLQLHGEAASPRSQALAGQTFVLTGTLPTLSRNEAK 623 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G VS +S+KT ++ G+ GSKLEKA L + +NE Q L LL Q Sbjct: 624 ALIEAAGGKVSGSVSKKTSYVVAGEEAGSKLEKAIALNIPQLNETQLLDLLAQ 676 >gi|260175035|ref|ZP_05761447.1| DNA ligase [Bacteroides sp. D2] gi|315923266|ref|ZP_07919506.1| DNA ligase [Bacteroides sp. D2] gi|313697141|gb|EFS33976.1| DNA ligase [Bacteroides sp. D2] Length = 666 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 236/713 (33%), Positives = 373/713 (52%), Gaps = 63/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E+ H+ YY + P I D E+D R + A P+ +D N P + Sbjct: 4 KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 117 SISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + + +R L+ +++ L + G Y Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK L Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429 D I+GL D+ +GD V V++ GE+IPK+ + DA+ F Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 F CP C S++VR G+ AAH C AC Q +++HF+SR A NI+GLG + Sbjct: 400 FIVNCPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F++ I+ AD++ L + I+ + G+ S N+ I + + + Sbjct: 454 TVDMFYRLR----LIKNTADLYKL------TADDIKGLDRMGEKSAENIITGIAQSKTVP 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER IF+LGIR VG +A+ +AK + + + Q D L+ + +G+ IA Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666 Q+I+ ++ N N V A LKE + R E+++S ++ + +V +G R + Sbjct: 554 QSILAYFANESNRELV-AKLKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEY 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +E + + G +S KT I+ GDN G +KLEKA++LG+ I++E++FL L+ Sbjct: 613 KELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665 >gi|302344112|ref|YP_003808641.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075] gi|301640725|gb|ADK86047.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075] Length = 691 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 234/717 (32%), Positives = 369/717 (51%), Gaps = 42/717 (5%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E S+ A + ++ L +E+ YY + + D+ YD + + FP L + Sbjct: 1 MEKPSLSAAARRVAQLSEELRRWSRVYYNEGRQEVADALYDQRFAELEELERLFPMLRLA 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P ++G S V+H P LSLE + + + R+ Q + Sbjct: 61 DSPT---RRVGAPPQSSFAAVSHFRPMLSLESRGDFGLVGDLLRRLADAGQPE----AAI 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +PKIDG I + YE A+ RGDG G+DV+ R + IP L P ++ VR Sbjct: 114 LAQPKIDGLSIELVYENNLLRTASTRGDGVVGDDVTTNARVVGGIPHALEGLAPALVVVR 173 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY+ + FL LN +++A G+ +ANPRNAA+G LR+ +P R L FFV L Sbjct: 174 GEVYMDRAGFLDLNRQLVAQGQDGFANPRNAAAGSLRQQDPFVTAGRPLRFFVFELVNAD 233 Query: 248 EIFAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ + L+ + GFP+ ++ +R + + + + R+ LP+DIDG+ KV Sbjct: 234 DLGLASDSDALRLLGQWGFPLTDDHLRLGRGAEFVRQAHADYLARRAELPFDIDGVALKV 293 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +L+ LG+R+R+PRW ++ KF +Q T +LD+ +Q+GRTG LTPVA LEPV+IGG Sbjct: 294 DDLALRGVLGQRSRTPRWAVAWKFPPRQEVTPVLDVVVQVGRTGKLTPVALLEPVDIGGV 353 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN---ERHP 423 + ATLHN + + L D+RVGD ++RAG+VIP+V + ER Sbjct: 354 TVARATLHNFEEVARL-----------DLRVGDLARMERAGDVIPRVAGVARQAPPERRG 402 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 A P+ CP+C + +VRD HRC L C AQQ L+HF SR A ++ Sbjct: 403 PA--IVAPTHCPVCGATIVRDEGGVN------HRCPNSLGCPAQQKAALRHFASRAAMDV 454 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG + ++ ++ F +P+ ++ L R+ ++ + G+G++S NL +I Sbjct: 455 EGLGGKNVEALWER---GFLSDLPS-LYALAARRD----ELAGLRGWGELSADNLLRAIA 506 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--IAHNNDDWLSLIRV 601 + +L+RFIF+LGI VG E A+ LA+ S + + A + L L + Sbjct: 507 ATKGAALDRFIFALGIPGVGQETAKLLAQRLGSLEALVAAADGWRKPAKDRPAGLYLDDI 566 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQK 660 VG A+ I F+Q P+ L + V P+ + + K +VFTG L+ Sbjct: 567 AGVGPKTAEDIQRFFQTPQTRQTALKLAELVGPTWAESPTPRAGAPLAGKTIVFTGRLEG 626 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + R +A+ GA V+ +SR TD +++G+NPG KL +A++LGV M +FL L Sbjct: 627 LSRPQAKALAEAAGAKVAGQVSRSTDWLVLGENPGGKLGEARKLGVPTMTLAEFLTL 683 >gi|237717569|ref|ZP_04548050.1| DNA ligase [Bacteroides sp. 2_2_4] gi|293371586|ref|ZP_06618001.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f] gi|229453155|gb|EEO58946.1| DNA ligase [Bacteroides sp. 2_2_4] gi|292633449|gb|EFF52017.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f] Length = 666 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 236/713 (33%), Positives = 373/713 (52%), Gaps = 63/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E+ H+ YY + P I D E+D R + A P+ +D N P + Sbjct: 4 KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 117 SISLTYENGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + + +R L+ +++ L + G Y Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK L Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429 D I+GL D+ +GD V V++ GE+IPK+ + DA+ F Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 F CP C S++VR G+ AAH C AC Q +++HF+SR A NI+GLG + Sbjct: 400 FIVNCPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F++ I+ AD++ L + I+ + G+ S N+ I + + + Sbjct: 454 TVDMFYR----LGLIKNTADLYKL------TADDIKGLDRMGEKSAENIITGIAQSKTVP 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER IF+LGIR VG +A+ +AK + + + Q D L+ + +G+ IA Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666 Q+I+ ++ N N V A LKE + R E+++S ++ + +V +G R + Sbjct: 554 QSILAYFANESNRELV-AKLKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFVHHSRDEY 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +E + + G +S KT I+ GDN G +KLEKA++LG+ I++E++FL L+ Sbjct: 613 KELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665 >gi|282896837|ref|ZP_06304843.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9] gi|281198246|gb|EFA73136.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9] Length = 692 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 241/722 (33%), Positives = 380/722 (52%), Gaps = 70/722 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q +EL L Q+ Y YY PI+ D+ YD L R + +P+L S+ P Sbjct: 12 QRVEELRKLLQQAGY---AYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVTSDSPT--- 65 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKI 134 ++G V H+IP SLE +N+E+L+ + R R + + E KI Sbjct: 66 QRVGERPATHFSSVRHNIPLYSLENAFNVEELQTWNQRWIRHLPTPHSLTKVEYVAELKI 125 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP-----EIIEVRG 189 DG + + Y+ G V A RGDG +GED++ +R I +IP L LN E +EVRG Sbjct: 126 DGAALALTYQNGVLVKGATRGDGITGEDITPNVRTIRSIP--LRLNFDGIEPIEKVEVRG 183 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GK 245 EV++ F +N + G + +ANPRNA +G LR+L+P + R L+FF + L G Sbjct: 184 EVFLPLEVFKQINQKRQKAGEQLFANPRNAVAGTLRQLDPRVVAQRQLDFFAYTLHIPGL 243 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 A Q+E L+ ++ LGF V+ + ++ + YY + R PY DG+V K Sbjct: 244 DDRSIANTQWESLELLQKLGFRVDVNHKLCSSVDEVAQYYQYWNTERLNSPYMTDGVVVK 303 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 ++ F LQ+QLG + PRW I+ K+A ++A TR+ +I + +GRTG LTP+A + PV + G Sbjct: 304 LNAFKLQEQLGFTQKFPRWAIALKYAAEEAPTRVENIMVNVGRTGALTPLAEMRPVQLAG 363 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ ATLHN D ++ L DIR+GD V+V++AGE+IP+VV +I R + Sbjct: 364 TTVSRATLHNSDRLREL-----------DIRIGDTVIVRKAGEIIPEVVRVIKELRPNET 412 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +PF P+ CP+C VVR+L G++V RC +C A ++H+VSRDA +I+G Sbjct: 413 KPFIMPTNCPVCGQPVVREL----GEVVT--RCVNA-SCPAILKGEIEHWVSRDALDIKG 465 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G++ + D + AD+++L Q ++ G S L I + Sbjct: 466 IGEK---LVHQLVDKGL-VHSVADLYSLTEEQLCGLERM------GKRSAEKLVQVIRES 515 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N R ++ LGIRHVG A+ L++ + + A A +D + V +G Sbjct: 516 KNQPWSRVLYGLGIRHVGNVNAQLLSEKFTTVDKLA------TAKQSD----IEGVYGIG 565 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIG---------RHEKNVSSEIENKKLVFTG 656 IAQ++ +++ +I A + L+ + SIG + ++ NK V TG Sbjct: 566 VEIAQSVYQWF----HISANQNLITRLQ-SIGLQFDQTQLIYNAAATKPDLVNKIFVITG 620 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL ++R +A+ + + GA V+ LS+KTD ++VGD GSKLEKA+ LG+K ++E + L Sbjct: 621 TLPTLKRDEAKSLIQKAGAKVTDSLSKKTDFVVVGDKAGSKLEKARALGIKQLDEAELLE 680 Query: 717 LL 718 +L Sbjct: 681 ML 682 >gi|325694926|gb|EGD36831.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK150] Length = 652 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 230/698 (32%), Positives = 370/698 (53%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F R+ + + + + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRVCKEFPQ-----VSYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ +++ + Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 +L K+ LGF VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++L Sbjct: 229 AVLNKLAALGFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEREAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + +P PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V K A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVH------FKDEVALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D+ + R + ++EN F + S LY +I + S ER +F Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614 LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIA----------AIDSLGTVIAQSLHTY 549 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F Q I E V+ + + + +V TG LQK+ R++A+E + LG Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQNLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ Sbjct: 610 ANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647 >gi|308811310|ref|XP_003082963.1| COG0272: NAD-dependent DNA ligase (ISS) [Ostreococcus tauri] gi|116054841|emb|CAL56918.1| COG0272: NAD-dependent DNA ligase (ISS) [Ostreococcus tauri] Length = 808 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 255/787 (32%), Positives = 381/787 (48%), Gaps = 128/787 (16%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 ++L++++AR+EL L +E+++HD YY + +I DSEYD+L+ R AI P AR+ Sbjct: 63 DSLTVDEARRELERLNEELAHHDRSYYNDGEGVISDSEYDSLRARYLAIERLHPSAARAL 122 Query: 70 DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 G ++G + L K+ H+ P SL ++I + F+ R+ +K I Sbjct: 123 ---GASARVGATPDDQSGLEKIAHATPMRSLGNAFDIAQVEAFVNRV-----EKAHGEI- 173 Query: 128 FTLEPKIDGTMITIRYEKG------KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 G ++RYE G F A +R P L Sbjct: 174 --------GVDASLRYENGFSRCDETFSQARVR-------------------PTRLKAPY 206 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH 241 P ++E+RGEV++++ DF +N E A G + + N RNAA+G +R LN D L F + Sbjct: 207 PAVLEIRGEVHVAEEDFRRVNAERAATGVRVFKNARNAAAGAMRLLNAEDNQMPLRFLAY 266 Query: 242 GLGKTSEIFAKG------QYEMLQK-MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 G G E A Q E L + GF + +T G++ Y ++ R + Sbjct: 267 GWGAAGETDADANAPWVTQSEFLSSFLPSQGFDAVPVLGVTSTVEGLMETYEALEIARPS 326 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 +PY+IDG+VYKV+ +LQ+ LG AR PRW I+HKF A T L I+IQ+GRTG LTP Sbjct: 327 MPYEIDGVVYKVNSVALQQTLGADARQPRWAIAHKFTAMSAVTTLRAIEIQVGRTGALTP 386 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 V L+PV+IGGA I ATLHN D I G + ++VG +V+V+RAG+VIP+VV Sbjct: 387 VGLLDPVDIGGACIQRATLHNFDEI-----------GRKRLKVGAQVMVERAGDVIPRVV 435 Query: 415 -----DIIVNERHP-DAQPFS---FPSFCPICQSRVVR-DLNPKTGKLVAAHRCTGGLAC 464 D+ +P DA P PS CP C + VVR L+ + RCTGGL C Sbjct: 436 SLAGEDLAEAAAYPEDALPLPEWLPPSKCPDCGASVVRAPLSASKNAMGTIVRCTGGLKC 495 Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST--- 521 +Q +ERL HF SRDA +I GL + L+ + ++ PADIFTL+RR + Sbjct: 496 PSQSMERLLHFCSRDALDIRGLARATLETLHREG----VVKTPADIFTLERRFGPDSGET 551 Query: 522 -------TKIENILG----FGD---VSVTNLYDSIN-KRRNISLERFIFSLGIRHVGAEI 566 T ++N G D S L+ +I +RR + L RFI++LGI ++GA Sbjct: 552 VPTWWRYTGVKNSKGEVKEGSDGLKASAVKLFQAIELRRRGVPLHRFIYALGIPNIGAHT 611 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWL---SLIRVPLVGDIIAQAIVEFYQNPRNIC 623 A+ LA +Y+S F ++ + A L +L + VG ++AQ++V+F+ P N Sbjct: 612 AKVLATHYVSLDAF-RKASMAAAKGGSTSLAYGALTHIDGVGPVLAQSLVDFWGEPANAS 670 Query: 624 AVEALL----------KEVSPSIGRHEKNV-------------------SSEIENKKLVF 654 V ++ + PS R + + K++F Sbjct: 671 IVSEIIANGVVVLDAAESSKPSSTRQPPAAPLSSATSAASTKPAEYSAPGANLTGAKILF 730 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ 713 TGT+ R + A V + LS KT ++ G G +KL KA LGV I++ Sbjct: 731 TGTVDGYPRETVHRLIESASAEVVSSLSSKTTCVLAGSGAGPAKLAKASALGVPIIDAAD 790 Query: 714 FLFLLQQ 720 F+ L + Sbjct: 791 FILALDR 797 >gi|312962450|ref|ZP_07776941.1| DNA ligase [Pseudomonas fluorescens WH6] gi|311283377|gb|EFQ61967.1| DNA ligase [Pseudomonas fluorescens WH6] Length = 789 Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 210/627 (33%), Positives = 338/627 (53%), Gaps = 48/627 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + L E+ H+ Y+ +P I D+EYD L A+ P+L + P Sbjct: 4 AHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPELVTRDSPT---Q 60 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTL 130 ++G + +V H IP LSL ++ + +F R+ + ++ ++ Sbjct: 61 RVGSAALSAFTQVRHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVEYSC 120 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189 EPK+DG +++ Y+ G+ V A RGDG +GED+S +R + IP ++ P +EVRG Sbjct: 121 EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLEVRG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV++SK F LN + VG K +ANPRNAA+G LR+L+ +R L F +G+G+ + Sbjct: 181 EVFMSKAGFERLNASQLDVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQVTA 240 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + L++++ G P+++ ++ A + YY ++ + R++LPY+IDG+V+KV+ Sbjct: 241 DISDTHIGNLKQLQQWGMPISHELKLAKGIQECLDYYRDIGARRNSLPYEIDGVVFKVNS 300 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G + Sbjct: 301 IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV 360 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D + L + +GD V+++RAG+VIP+VV ++ R A+ Sbjct: 361 SNATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVSVVTERRPEHARAV 409 Query: 429 SFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P CP+C S V R + GK A +RC G LAC AQ + + HFVSR A + Sbjct: 410 QIPESCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMD 469 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLG + ++ + I PAD++ L+ Q I ++ GF D+S L +I Sbjct: 470 IDGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFADISSKKLITAI 519 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + +L RFI++LGI VG E A+ LA+ S + + + ++ + +P Sbjct: 520 EHSKAPTLARFIYALGIPDVGEETAKVLARSLASLERVRKALPEVLTY----------LP 569 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALL 629 VG +A I F+++ N + ALL Sbjct: 570 DVGLEVAHEIHSFFEDSHNQQVIGALL 596 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 16/180 (8%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L + L + VG A+ LA + S + + DWL + + + + Sbjct: 618 STTLGGLLDKLHVPSVGPGAAQKLADKFTSLEGVIKA----------DWLDMRQA--LPE 665 Query: 607 IIAQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQ 662 A+A+ +F+ N N A+E LK+ +K V E V TG+L+ + Sbjct: 666 KQAKAVRDFFDNADNANRALAIEQQLKDFGMHWQSEKKVVEGLPEAGHTWVLTGSLELMS 725 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R A+E + LGA V+ +S KT ++ G GSKL KA +LG+K+++EE F+ L ++N Sbjct: 726 RDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFLAKHN 785 >gi|161507068|ref|YP_001577022.1| DNA ligase [Lactobacillus helveticus DPC 4571] gi|190359262|sp|A8YTZ3|DNLJ_LACH4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160348057|gb|ABX26731.1| DNA ligase [Lactobacillus helveticus DPC 4571] Length = 668 Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 228/714 (31%), Positives = 388/714 (54%), Gaps = 63/714 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++++A+KE +SL ++ D YY P + D+ YD R + AFP++ P Sbjct: 4 ITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFPEIVT---P 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GGE++ KV H IP LS+ +++ ++L++F R+ QK + + + +E Sbjct: 61 DSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRM----QKLVGHPVEYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y+ GK V A+ RG+G+ GEDV+A R I IP+VL P IEVRGE Sbjct: 117 LKIDGLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPE--PLTIEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTSEI 249 Y+ K F LN E G +ANPRNAA+G LR+L+P R L+ F++ + EI Sbjct: 175 YMGKEAFAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPREI 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + Q++ +++M LGF N R+ + + +E + R++L Y IDG+V KVD+ Sbjct: 235 TS--QHQAIERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SL++QLG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 293 SLEQQLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVA 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DY+ + +R+GD V + +AG++IP++ ++++++R D+ P+ Sbjct: 353 RASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVLSKRPADSVPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C ++V + A RC +C AQ E + HF SR A NI GLG + Sbjct: 402 IPTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGIIHFASRPAMNIAGLGPK 454 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + ++D ++ AD++ L + + + F + S+ NL +I+ + S Sbjct: 455 IVKQLI-AKDLVHNV---ADLYHL------TEDDLAQLDHFKEKSINNLLTAIDNSKKNS 504 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +E I LGI HVGA+ AR +A+ + + + I++ D S + +G A Sbjct: 505 VELLITGLGIDHVGAKAARLIAQKF-------KNLEKIMSLGVQDIAS---IDTIGMTTA 554 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTLQKI 661 +++ ++ P + L++E+ S +G E + + ++K +V TG L+ Sbjct: 555 ESMTTYFAQPE----AQKLIEELRESGLNMDYLGADEPEEAPDNPFKDKTVVLTGKLEHY 610 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R + + + LGA V+ +S KTD +I G + GSK KA+QLGV ++ EE+ + Sbjct: 611 TRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTEEEAI 664 >gi|300856841|ref|YP_003781825.1| DNA ligase [Clostridium ljungdahlii DSM 13528] gi|300436956|gb|ADK16723.1| DNA ligase [Clostridium ljungdahlii DSM 13528] Length = 664 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 233/702 (33%), Positives = 371/702 (52%), Gaps = 49/702 (6%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + L++ I+YH+D YY P + D EYD L + I P++ P+ P +GG Sbjct: 8 NELKKIINYHNDRYYNQDNPEVSDYEYDMLMQELKNIEREHPEVIT---PDSPTQHVGGN 64 Query: 82 MNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 S V H +P LSL ++N ED+ +F+ + K + F +E KIDG + Sbjct: 65 AKRESGVLVRHRVPMLSLRDVFNKEDVEQFVDDV-----KAQFPDVEFVVETKIDGLSMA 119 Query: 141 IRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +RYE GK + A RGDG GEDV+ + I + + L IP +E+RGEVY++K F Sbjct: 120 LRYEDGKLITAITRGDGIVYGEDVTVNAKVINDVVKSLKDKIP-YLEIRGEVYMTKQAFE 178 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM 257 +N+ +G+K +ANPRN A+G LR+L+ + +T R L+ F+ + + K E Sbjct: 179 NVNEHQELLGKKVFANPRNCAAGTLRQLD-SKVTKERNLSLFIFNVQDVRGMEFKTHTEG 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 + ++ G V T I + R L YDIDG V K++ + + +LG Sbjct: 238 YEFLKKQGIKVIENYTVCKTTGEIWDAIERIGENRGDLDYDIDGAVIKINNLAYRTELGS 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++ P+W I++K+ ++ T+LLDI + +GRTG +TPVA EP+ + G ++ ATLHN+D Sbjct: 298 TSKVPKWAIAYKYPPEEKETKLLDIQLTVGRTGRITPVAIFEPIRLCGTSVSRATLHNQD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 +I L D+ VGD ++V ++GE+IPK+ +I +R F FP CP+C Sbjct: 358 FIDEL-----------DVGVGDTIVVYKSGEIIPKIKKVIHEKRPEGTVKFQFPDKCPVC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S V R+ + A +CT + C + ++R+ +FVSRD +I+G G ++ Sbjct: 407 GSPVARE------EGAADIKCT-NINCPSMLVKRIINFVSRDCMDIKGFGAAYVEQLV-- 457 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 D + IP DI+ L + E I+G + + L D+I + +R + SL Sbjct: 458 -DKGYIDDIP-DIYHLNEYRDKLVE--EGIIG-KEKNTDKLLDAIENSKKNEPQRLLASL 512 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI +VG A+ L KY+ S I+N+I N D + +V +GDI A AI E+++ Sbjct: 513 GISNVGKSTAKELMKYFKS-------IDNLI---NADIDEIKKVSDIGDISASAIFEYFK 562 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 N N+ + L K + K + +E K V TGTL + R +A+E + + G V Sbjct: 563 NEDNLKIISELAKCGVNMVMNENKEEDNLLEGSKFVITGTLPSMGRTEAKELIEKHGGKV 622 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 S +S+KT ++ GD PGSK+ KAQ+LGVK+++E + L +L+ Sbjct: 623 SGSVSKKTTYVLAGDAPGSKVTKAQELGVKVISEAELLQMLK 664 >gi|229591993|ref|YP_002874112.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens SBW25] gi|254781395|sp|C3JXX6|DNLJ_PSEFS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|229363859|emb|CAY51325.1| DNA ligase [Pseudomonas fluorescens SBW25] Length = 785 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 217/627 (34%), Positives = 342/627 (54%), Gaps = 51/627 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + L E+ H+ Y+ +P I D+EYD L A+ PDL + P Sbjct: 4 AHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPT---Q 60 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTL 130 ++G + +V H IP LSL ++ + +F R+ + ++ ++ Sbjct: 61 RVGSAALSAFTQVKHDIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVEYSC 120 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189 EPK+DG +++ Y+ G+ V A RGDG +GED+S IR + IP ++ P +EVRG Sbjct: 121 EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNIRTVRNIPLKLHGSGWPATLEVRG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EV++SK F LN + VG K +ANPRNAA+G LR+L+ +R L F +G+ T++ Sbjct: 181 EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGV--TTD 238 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 I + LQ+++ G P+++ ++ A + YY ++ R++LPY+IDG+V+KV+ Sbjct: 239 I-SDTHIGNLQQLKKWGMPISHELKLAKGIQDCLDYYRDIGERRNSLPYEIDGVVFKVNS 297 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+PV + G + Sbjct: 298 IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV 357 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D +V R G + +GD V+++RAG+VIP+VV ++ R +A+ Sbjct: 358 SNATLHNMD---------EVARLG--LMIGDTVIIRRAGDVIPQVVSVVPERRPENARAV 406 Query: 429 SFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P CP+C S V R + GK A +RC G LAC AQ + + HFVSR A + Sbjct: 407 QIPESCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMD 466 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GLG + ++ + I PAD++TL+ Q I ++ GF D+S L +I Sbjct: 467 IDGLGDKTIEQLVDEK----LIGSPADLYTLKYEQ------IIDLEGFADISSKKLITAI 516 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + +L RFI++LGI VG E A+ LA+ S + + + ++ + +P Sbjct: 517 ENSKTPTLARFIYALGIPDVGEETAKVLARSLASLERVQKALPEVLTY----------LP 566 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALL 629 VG +A I F+++ N + ALL Sbjct: 567 DVGLEVAHEIHSFFEDSHNQDVIGALL 593 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 16/180 (8%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L + L + VG A+ LA +++ + + DWL + + + + Sbjct: 615 STTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKA----------DWLDMRQA--LPE 662 Query: 607 IIAQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIE-NKKLVFTGTLQKIQ 662 A+A+ EF+ N N A+E LK+ +K V E V TG+L+ + Sbjct: 663 KQAKAVREFFDNADNANHALAIEQQLKDFGMHWDSEKKVVEGLPEAGHTWVLTGSLELMS 722 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R A++ + LGA V+ +S KT ++ G GSKL KA +LG+K+++EE F+ L ++N Sbjct: 723 RDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFLAKHN 782 >gi|298372045|ref|ZP_06982035.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058] gi|298274949|gb|EFI16500.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058] Length = 670 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 225/708 (31%), Positives = 370/708 (52%), Gaps = 54/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +EI H+ YY + P I D E+D ++ +++ A+P+ D N P ++ Sbjct: 8 QQIIKLRKEIEAHNHAYYVDNNPTISDFEFDMRLKQLESMEKAYPEYF---DKNSPTQRV 64 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGT 137 G ++ S ++ H P LSL ++ ++ +F R+ +K N+ F E K DG Sbjct: 65 GSDLTKSFKQIVHQYPMLSLANTYSEGEVTEFYNRV-----RKSLNTDFDVVCELKYDGA 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G+ A RGDG G+DV+A IR I +IP L + P E+RGEV + Sbjct: 120 SISLIYENGELAAAVTRGDGVRGDDVTANIRTIQSIPIRLCGDFPSRFEIRGEVLMPFAV 179 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL--NFFVHGLGKTSEIFAKGQY 255 F LN E G +ANPRNAASG L+ NP+++ R ++ + LG+ E+ A+ Y Sbjct: 180 FDELNREKAENGEPLFANPRNAASGTLKLQNPSEVARRRLDSYLYYLLGE--ELPAETHY 237 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + + + GF ++N +R + I + + R LP DG+V KV++ Q+ L Sbjct: 238 DNMMAAKTWGFKISNAIRCCRSLDEIFDFIRYWDTERRNLPVATDGIVLKVNDLRQQRNL 297 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++K+ ++A TRL + Q+GRTG +TP+A LEPV + G + A+LHN Sbjct: 298 GLTAKSPRWAIAYKYQAERALTRLNSVSYQVGRTGAVTPIANLEPVLLSGTTVKRASLHN 357 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I GL D+ +GD V V++ GE+IPK+ + R FP CP Sbjct: 358 ADIIAGL-----------DLHIGDMVFVEKGGEIIPKITGVDTEAREAYMPKVVFPQCCP 406 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S +VR+ + AAH C C Q ++ HFVSR A +I GLG + + F Sbjct: 407 ECGSALVRNEDE------AAHYCPNEDHCPPQIKGKILHFVSRKAMDIIGLGDETIALLF 460 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + + ADI+ L+ + I + G+ S N+ D I + I IF Sbjct: 461 EKS----LVGNVADIYELK------ISDIAPLERLGEKSAQNIVDGIEASKQIPYPNVIF 510 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR+VG +A+ LAK + S + + LI+V +G++IA+++V++ Sbjct: 511 ALGIRYVGETVAKRLAKAFPSIEQLEEAT----------LEQLIQVDEIGEVIARSVVDY 560 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + + + + LK + E+ ++S+ +E K +V +G K R + ++ + Q Sbjct: 561 FAKEEHRQLI-SRLKAAGIRLAADEQPGHISALLEGKTVVISGVFAKHSRDEYKDMIEQN 619 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 G S +S KT ++ GDN G +KL+KAQ+LG++++ E++FL ++ + Sbjct: 620 GGKNSGSISAKTSFVLAGDNMGPAKLDKAQKLGIRLVTEDEFLEMIAK 667 >gi|160934306|ref|ZP_02081693.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753] gi|156866979|gb|EDO60351.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753] Length = 661 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 233/711 (32%), Positives = 369/711 (51%), Gaps = 53/711 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +E ARK L ++++YH YY+ P I D EYD + R + I A+P+L +ED Sbjct: 1 MDLENARKSAEELRKKLNYHAKKYYEEDNPEITDYEYDMMLRELEGIELAYPELV-TED- 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++GG VTH +P SL ++ E+L F ++ K + + +E Sbjct: 59 -SPTQRVGGAALNKFTPVTHEVPMESLHDSFSEEELFDFDRKVREVVPK-----VSYVVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK DG +++ Y G FV + RGDG GEDV+ +R I TIP+ L+ +P +EVRGEV Sbjct: 113 PKFDGLSVSLEYRNGIFVRGSTRGDGSVGEDVTENLRTIKTIPKKLTRAVP-FLEVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+S FL L + KP+ NPRNAA+G LR+ + + IT R L+ +V + + + Sbjct: 172 YMSNESFLKLLERQELNEEKPFKNPRNAAAGSLRQKD-SRITAQRELDIYVFNIQQIEGV 230 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L + LGF + +V + R + +DG V KV+ F Sbjct: 231 VLNTHKESLDYLTELGFHTPPFYNCYDDMDDVVKEIQRIGEQRGGFSFPVDGAVIKVNAF 290 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++ +G ++ P+W + K+ ++ T LLDI+I +GRTG+LTP EPV + G ++ Sbjct: 291 HDRELIGSTSKFPKWAEAFKYPPEEKETALLDIEINVGRTGVLTPTGLFEPVLLAGTTVS 350 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNED+IK +DIR+GD V++++AGE+IP+VV V PD++P+ Sbjct: 351 RATLHNEDFIK-----------EKDIRIGDTVVLRKAGEIIPEVVS--VKAHKPDSKPYQ 397 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C S+V R+ AA RC C AQ L L HFVSRDA ++EGLG Sbjct: 398 MPEHCPSCGSKVQREPGE------AALRCD-NTQCPAQLLRHLIHFVSRDAMDMEGLGPA 450 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ + + P D+++L + ++ G+ S NL +++ K + Sbjct: 451 VLEQLVAHQ----LVSSPVDLYSLNKEALVDLERM------GEKSAENLLNAVEKSKGND 500 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 RFI++LGIRH+G A+ L + + + I+ I+ ++ + + G I+A Sbjct: 501 FYRFIYALGIRHIGLRAAKLLTQRFPT-------IDQILKAPPEE---IAAIDGFGQIMA 550 Query: 610 QAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ ++ P +++ K V+ E++ K V TG L R +A + Sbjct: 551 ESAAYYFSLPETRKLIDSFRTKGVNLESFEKEESKDLRFSGKTFVLTGALPTYTRAEAGK 610 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G VS+ +S+KT ++ G+ GSKL KAQ+LGV I++EE+FL +LQ Sbjct: 611 MIEDRGGKVSSSVSKKTSFVLAGEEAGSKLTKAQKLGVPIISEEEFLAMLQ 661 >gi|325690880|gb|EGD32881.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK115] Length = 652 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 234/701 (33%), Positives = 370/701 (52%), Gaps = 61/701 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F R+ +K+ + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRV-----RKEFPQVSYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ + S A Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQADSQE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E+L K+ LGF VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++L Sbjct: 229 EVLNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + +P PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV---SVTNLYDSINKRRNISLER 552 ++ A I+ L +EN+L G+ S LY +I + S ER Sbjct: 450 AQN----LVKDVAGIYRL---------TVENLLELGNFKEKSANKLYTAIQASKENSAER 496 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 497 LLFGLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSL 546 Query: 613 -VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F Q I E V+ + + + +V TG LQK+ R++A+E + Sbjct: 547 HTYFEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQ 606 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 LGA VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ Sbjct: 607 SLGANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647 >gi|91216495|ref|ZP_01253461.1| DNA ligase [Psychroflexus torquis ATCC 700755] gi|91185289|gb|EAS71666.1| DNA ligase [Psychroflexus torquis ATCC 700755] Length = 667 Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 227/707 (32%), Positives = 374/707 (52%), Gaps = 55/707 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ +L QE+ H+ YY P I D ++D + P+ +DPN P ++G Sbjct: 6 QIENLRQELHEHNYKYYVLDAPEISDYDFDMKLNALQELEKTHPEY---KDPNSPTMRVG 62 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE+ + V H P SL ++ EDL + TR+ QK + + FT E K DG I Sbjct: 63 GEVTKNFKTVVHDFPMYSLSNSYSKEDLEDWQTRV----QKIIEEPVEFTCELKYDGASI 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198 ++ YE G+F+ A RGDG G++V+ ++ I ++P ++ N P ++RGE+ + F Sbjct: 119 SLTYEDGEFLRAVTRGDGTQGDEVTHNVKTIRSVPLKLKGDNYPRRFDIRGEIVLPYKGF 178 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKGQYE 256 +N E + +G +PYANPRN SG L+ + ++ R L ++ L T E + Q E Sbjct: 179 AKMNAERVELGEEPYANPRNTTSGSLKLQDSAEVAKRPLLCLLYNL--TGENLGVSTQME 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L K R GF V + + + +Y N R LPY+ DG+V KV+ Q++LG Sbjct: 237 SLNKSREWGFNVPKEAKLTKSIDEVFAYINYWDEHRHDLPYETDGVVIKVNSLQQQEELG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+SPRW +++KF +Q ST L I Q+GRTG +TPVA L+P+ + G + A+LHN Sbjct: 297 YTAKSPRWAMAYKFKAEQVSTTLNQITYQVGRTGAITPVANLDPIQLAGTTVKRASLHNA 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCP 435 D I+ L DIR GD V V++ GE+IPK++ + +R + +QP + CP Sbjct: 357 DQIEKL-----------DIREGDVVFVEKGGEIIPKIIGVDFKKRDSESSQPTVYLKECP 405 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C++ + R K G+ A H C C Q + R++HF+SR A +IEGLG + + Sbjct: 406 ECETPLER----KEGE--ALHFCPNTEGCPPQIIGRIQHFISRKAMDIEGLGGETVALLV 459 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + + I AD++TL++ ++ + S NL + ++I ER ++ Sbjct: 460 RED----LIEDYADLYTLRKEDVLPLERM------AEKSAVNLIKGVEASKDIPFERVLY 509 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 LGIR+VG +A+ L K + S A + N++A V +G+ IAQ++V+ Sbjct: 510 GLGIRYVGETVAKKLVKAFKSIDVLASASLENLVA-----------VDEIGERIAQSVVD 558 Query: 615 FYQNPRNICAVEALLK-EVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+++ N ++ L ++ I E + S+ + + LV +G K+ R + Q+ + + Sbjct: 559 FFKDDANKLRIDRLRNYGLNLEISEEEMEGQSNTLIDLTLVISGVFLKVSRRELQDLIEK 618 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G ++ +S+KTD ++ G+N G SKL KA+ LGVKI+ E++FL ++ Sbjct: 619 HGGKNTSSISKKTDYLVAGENMGPSKLAKAENLGVKIITEDEFLTMV 665 >gi|116669859|ref|YP_830792.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24] gi|166215392|sp|A0JUH2|DNLJ_ARTS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116609968|gb|ABK02692.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24] Length = 790 Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 224/734 (30%), Positives = 378/734 (51%), Gaps = 63/734 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E +L +E+ H YYQ PII D+E+D L RR + I P+L ++ P + Sbjct: 52 REEYENLVEEVRKHRFAYYQEDAPIISDAEFDELFRRLETIEAMHPELVANDSPT---QE 108 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI--FFTLEPKID 135 +GGE++ + V H SLE ++++E+L +I + K + + + E KID Sbjct: 109 VGGEVSAAFAAVEHLQRMYSLEDVFSLEELESWIAKAEASVAKLGNGTAGPAWLTELKID 168 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 G + + Y GK V AA RGDG++GED++ + I IP+ L+ N P +EVRGEV+I Sbjct: 169 GLAVNLLYRDGKLVRAATRGDGYTGEDITHNVLTIKEIPQQLTGGNYPAEMEVRGEVFIP 228 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 F N+ +I G+ P ANPRNAA+G LR+ +P + R L +VHG+G + Sbjct: 229 SKAFAEYNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRPLRMYVHGIGAREGLRTVS 288 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q + +++ G P + + I+ + R +L ++IDG+V KVD+F+ Q+ Sbjct: 289 QSDTYRQLAEWGLPTSPYFEVLGSLKDILDFIKRYGDKRHSLTHEIDGIVVKVDDFATQR 348 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG +R PRW +++K+ ++ T+LLDI + +GRTG +TP +EPV + G+ + ATL Sbjct: 349 ALGYTSRVPRWAVAYKYPPEEVHTKLLDIAVNVGRTGRVTPFGIMEPVKVAGSTVGMATL 408 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV---NERHPDAQPFSF 430 HN+D +K + +++GD V++++AG+VIP++V ++ +++ P + F Sbjct: 409 HNQDVVKA-----------KGVKIGDIVVLRKAGDVIPEIVGPVLALRDQQDPPVRDFVM 457 Query: 431 PSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + L P K G + RC +C AQ ER+ H SR AF+IE LG + Sbjct: 458 PTECPACGT----PLAPGKEGDVDI--RCPNSRSCPAQLRERVFHVASRGAFDIEALGWE 511 Query: 490 QLDFFFKSEDPAFS-IRIPADIFTL-------------QRRQQTSTTKIENILGF----- 530 + +P + A++F L +R + +T + E + F Sbjct: 512 AAIALTQPAEPVTPPLTSEANLFRLTREDLADVRIRREKRSKGVATGEFELVPYFYTKGT 571 Query: 531 ------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + L+ + K ++ L R + +L IRHVG +R+LA + S + Sbjct: 572 AKSPSKPTATTEKLFTELEKAKSQPLWRVLVALSIRHVGPRASRALATAFGSMDAIREAS 631 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 +AH V VG +IA A+ E++ + V+ ++ +++ Sbjct: 632 EEELAH----------VDGVGPVIAAALKEWFAEDWHREIVDTWAEDGVRMEDEQDESTP 681 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TG+L+ R +A+E + G S +S+ T ++ G+N G+KL+KA+QL Sbjct: 682 RTLEGLTVVVTGSLEGFSRDEAKEAILIRGGKASGSVSKNTSYVVAGENAGTKLDKAEQL 741 Query: 705 GVKIMNEEQFLFLL 718 GV +++E+ F LL Sbjct: 742 GVPVLDEDGFRALL 755 >gi|323344237|ref|ZP_08084463.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269] gi|323094966|gb|EFZ37541.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269] Length = 665 Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 226/711 (31%), Positives = 373/711 (52%), Gaps = 58/711 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ +S L Q++ H+ YY + P I D +D + + +P + +DPN P + Sbjct: 4 KQRISELRQQLHEHNYKYYVLNAPTISDQAFDFMMHELQDLEAKYPKM---DDPNSPTKR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N +V H P LSL +N +D+ ++ ++ R ++ E K DG Sbjct: 61 VGSDLNSEFKQVAHKYPMLSLANTYNEQDVEEWFEQVARGLMGEE---FEVCCELKYDGL 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196 I++ Y G+ V RGDG G+DV+ ++ I IP VLS N P E+RGE+ + Sbjct: 118 SISLTYVDGQLVQGVTRGDGIHGDDVTENVKTIRAIPLVLSGNDYPHEFEMRGEILMPWK 177 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEIFAKGQ 254 F LN E A +ANPRNAASG L+ LN + +R+L+ + + LG+ ++ G Sbjct: 178 VFEQLNAEREANEEPLFANPRNAASGTLKSLNSRLVASRHLDSYLYYMLGE--QLPTDGH 235 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE + K + GF ++ G+R+ + I + + R LP DG+V KV+ Q+ Sbjct: 236 YENMMKAKHWGFKISAGMRKVKSLQQIYDFIKHWDTERKNLPIATDGIVLKVNSLRQQRA 295 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++A T+L+++ Q+GRTG +TPVA +EPV + G + ATL+ Sbjct: 296 LGYTAKSPRWAIAYKFKAERACTKLVEVTYQVGRTGAVTPVANMEPVKLAGTTVKRATLN 355 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D+IK D+ VGD V V++ GE+IPK+V + +++R DA+P SF + C Sbjct: 356 NADFIKSF-----------DLHVGDYVYVEKGGEIIPKIVGVALDKRPADAKPISFITHC 404 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + + R G+ AA+ C AC Q R++HF++R A NI+ +G + +D + Sbjct: 405 PECGTPLAR----YEGE--AAYYCPNDTACPPQIKGRIEHFIARKAMNIDSIGPETVDDY 458 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG--DVSVTNLYDSINKRRNISLER 552 ++ I AD++ + +++I G G + S + I + + ER Sbjct: 459 YRRG----LIHNAADLYNI---------TVQDINGAGNREKSALKIVRGIASSKQVPFER 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F+LGIR VG AR +A+++ NI A L V VG++IA+++ Sbjct: 506 VVFALGIRFVGETSARLIARHF----------KNIDALMEASLQDLTEVEGVGEVIAKSV 555 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEY 669 + ++ NP N V A L+ + E+ S ++ K +V +G R + + Sbjct: 556 IAYFSNPINKEIV-ARLRNYGLQMALSEEQQAGSSDKLTGKSIVISGVFTHHSRDEYKAL 614 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + Q G +S KT ++ GDN G SKLEKA++LGV I++E+ FL +++ Sbjct: 615 IEQNGGKNVGSISGKTSFVLAGDNMGPSKLEKAERLGVPIISEDDFLKMIE 665 >gi|332366947|gb|EGJ44687.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1059] Length = 652 Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 229/698 (32%), Positives = 370/698 (53%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F R+ +K+ + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRV-----RKEFPQVSYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ +++ + Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 +L K+ LGF VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++L Sbjct: 229 AVLNKLAALGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + +P PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D+ + R + ++EN F + S LY +I + S ER +F Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614 LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIA----------AIDSLGTVIAQSLHTY 549 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F Q +I E V+ + + + +V TG LQK+ R++A+E + LG Sbjct: 550 FEQEGSHILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ Sbjct: 610 ANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647 >gi|94984803|ref|YP_604167.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300] gi|122986680|sp|Q1J0I6|DNLJ_DEIGD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94555084|gb|ABF44998.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300] Length = 684 Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 228/707 (32%), Positives = 365/707 (51%), Gaps = 60/707 (8%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 +L EI H+ YY+ P I D EYD L R A+ A P+ N P +GG Sbjct: 26 ALRAEIERHNRAYYELDAPEIPDDEYDRLVRELRALEAAHPEWVAE---NSPAQTVGGAP 82 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMITI 141 + + V H P SL+ +++ E+L ++ ++ R D+ F +T E KIDG + + Sbjct: 83 SSAFLPVEHPTPMTSLDNVFSDEELAEWQEKLARALNLPPDHDGFTYTGELKIDGLSVNL 142 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 Y G +AA RG+G GE V+ + IP IPR L + +EVRGEVY+S+ DF A Sbjct: 143 YYADGVLQWAATRGNGRVGEMVTEQVLTIPGIPRALP-GLTGELEVRGEVYLSRADFAAF 201 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 N +G NPRN A+G LR+ +P TR+L + LGK + + Q E+L Sbjct: 202 NARAEELGLPLLKNPRNGAAGALRQKDPEVTRTRHLKALFYSLGKHDGVPVRTQGEVLAW 261 Query: 261 MRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 + GFP + R + TF G+ Y+ M + R+ +D DG V K+D +LQ + G Sbjct: 262 LAEQGFPTS---RYSETFTGLQAAADYHRRMTAQRAQFEFDADGTVLKLDSLALQAEAGS 318 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PRW +++KF ++ T L I + +GRTG L P+A L P I G+ ++ ATLHNED Sbjct: 319 TSRAPRWAVAYKFPVEEVETVLESITVNVGRTGKLAPLAHLSPRLIEGSTVSKATLHNED 378 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI+ L D+R+GD V+V+++G VIP+++ +++ +R PDA P+ FP+ CP C Sbjct: 379 YIRDL-----------DLRIGDTVVVRKSGGVIPQIMRVVLEKRPPDAAPYRFPTHCPEC 427 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 VVR A+ AC AQQ ERL++FVSR A ++ G+G++ ++ + Sbjct: 428 GHEVVRAEG-------DANTYCPNPACPAQQFERLRYFVSRGAMDVRGVGEKLIEQLLAT 480 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + AD++ L Q S + G+ N+ + + L R I +L Sbjct: 481 ----GLVHDAADLYQLTAEQLASLER------SGEKKAANILAQLEASKTRPLWRLINAL 530 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI HVG A++LA+ + + ++ ++A + S+ VP +G IAQ++ Sbjct: 531 GINHVGERNAQALARAFGT-------LDALLAATPE---SIEAVPGLGRTIAQSVSAALA 580 Query: 618 NPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +P + L LK V + R + + V TGTL + R + + + Sbjct: 581 DPSMQDLIRRLRERGLKPVEETAPRGDA-----LAGLSFVLTGTLSR-PRDEIKARLESA 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GA V+ +++KT +I G+ GSKL++A++LG+ +++E LL++ Sbjct: 635 GARVTGSVTKKTSYLIAGEEAGSKLDRARELGIPVLDEAGLGALLEE 681 >gi|325102906|ref|YP_004272560.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145] gi|324971754|gb|ADY50738.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145] Length = 670 Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 225/713 (31%), Positives = 377/713 (52%), Gaps = 50/713 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S+ + ++++ +L E++ H+ YYQ + P I D E+D + + + P R + P Sbjct: 1 MSLFEIKEKIDALVTELNRHNYNYYQLAMPTISDYEFDQKLKELEKLEQENPAFIRIDSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 K+GGE+ + VTH P LSL +N +DL F RI +K ++ + E Sbjct: 61 T---QKVGGEITKTFKTVTHKWPMLSLGNTYNEQDLVDFDQRI----RKIIGDNFEYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 K DG I++ YE G + A RGDG G++V+ I+ I TIP R+ I E+RGE Sbjct: 114 LKFDGLSISLTYENGDLIRAVTRGDGTKGDEVTTNIKTIRTIPHRIKGEGILPSFEIRGE 173 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249 V++ K F LN E I G +P+ANPRN ASG ++ N ++ R L+ F++ L + Sbjct: 174 VFMHKAAFEKLNQERIENGEQPFANPRNFASGTVKMQNSAEVAKRPLDCFLYFLYADKKP 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 F +E L + GF ++ + + + R L YDIDG+V KV+ + Sbjct: 234 FPT-HWESLHAVEKWGFKISQESKLCKNLAEVFDFITYWDQERFKLSYDIDGIVIKVNSY 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q++LG A+SPRW IS+KF + T L+++ Q+GRTG +TPVA L+PV + G + Sbjct: 293 AQQEELGFTAKSPRWAISYKFKAAEVETELIEVTYQVGRTGAVTPVANLKPVLLAGTTVK 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + I+ L D+ GD VLV++ GE+IPK++ + +++R DAQ Sbjct: 353 RATLHNANEIERL-----------DLYEGDTVLVEKGGEIIPKIMGVNLDKRKSDAQKIH 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 + + CP C + +VR K G+ A H C C Q + +++HF+SR NI+G+G + Sbjct: 402 YITHCPECGTELVR----KVGE--AVHYCPNDEGCRPQIIGKMQHFISRKVMNIDGIGDE 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + F IR +DI+ L++ + + ++ + FG+ SVTN+ I + + Sbjct: 456 TIETLYSK---GF-IRHISDIYNLKQDEDS----LKQMDRFGEKSVTNMLLGIENSKQMP 507 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 E+ +F LGIR+VG +A+ LA ++ + QN + + LI +G+ IA Sbjct: 508 FEKVLFGLGIRYVGETVAKKLALHFKNIQNL----------QHASFEQLIEAEEIGERIA 557 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKA 666 Q+I+E++ + +I + L+ EK V S + + + +G + R + Sbjct: 558 QSILEYFSDETHINEINKLIT-YGLQFEIEEKEVILQSESLLGQTFLISGVFENHSREEL 616 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 ++ + G + + +S K + ++ GDN G SKLEKA +L + I++E+ LL Sbjct: 617 KKIIEDNGGKMLSSISAKLNYLVAGDNMGPSKLEKANKLNIPIISEQDLFNLL 669 >gi|254495534|ref|ZP_05108458.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152] gi|85819890|gb|EAQ41047.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152] Length = 665 Score = 360 bits (924), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 222/697 (31%), Positives = 372/697 (53%), Gaps = 50/697 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E++ H+ YY I D E+D + D + P D N P ++GG + Sbjct: 10 LRNELNRHNYNYYVLDNATISDFEFDIKLKELDKLEQENPLFF---DANSPTQRVGGTIT 66 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 + V H SL+ ++ +DL + RI + + I +T E K DG I + Y Sbjct: 67 KNFNTVVHKNRMYSLDNSYSKDDLLDWEKRIQKILGTTE---ISYTCELKYDGASINLTY 123 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 E G+F+ A RGDG G++V+ I+ I +IP + + E+RGE+ + + F +N Sbjct: 124 ENGQFIKAVTRGDGFQGDEVTNNIKTILSIPLSIQDDFVSNFEMRGEIILPLDGFNKMNQ 183 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262 E +A G + Y NPRN ASG L+ + ++ R L+ ++ + T E K +E L++ R Sbjct: 184 ERVANGEEEYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQV-VTEERKYKTHFESLEQAR 242 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 +GF V ++ N+ + + N + R LPY+ DG+V KV+ Q++LG +++P Sbjct: 243 KVGFKVPKTIKLVNSIDEVFEFVNLWDTKRQDLPYETDGIVIKVNNLQQQEELGYTSKAP 302 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 RW I++KF +Q +T L +I Q+GRTG +TPVA L+PV + G + A+LHN D I+ L Sbjct: 303 RWAIAYKFKAEQEATLLNEITYQVGRTGAITPVANLDPVQLAGTTVKRASLHNADQIEKL 362 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 D+R+ D V V++ GE+IPK+V + ++R +++P + + CP C + +V Sbjct: 363 -----------DVRINDTVFVEKGGEIIPKIVGVDFSKRPENSEPTVYATNCPECGTELV 411 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 R A H C C+ Q R++HF+SR A +I+GLG + +D K Sbjct: 412 RTAGD------AKHYCPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKEG---- 461 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 I+ AD++ L + K+ + + S NL + I K + I E+ +F+LGIR V Sbjct: 462 LIQNYADLYEL------TVEKVLPLERIAEKSAKNLINGIEKSKEIPFEKVLFALGIRFV 515 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G +A+ LAK++ S I+N++A D+ +L+ V +GD IAQ+I++F N +I Sbjct: 516 GETVAKKLAKHFKS-------IDNLMAA---DFETLVAVDEIGDRIAQSIIDFSSNLTSI 565 Query: 623 CAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 V LKE + +N + +++ + V +G ++ R + ++ + G VS+ Sbjct: 566 QLVNR-LKEAGLQLSVSAESLENQTDKLKGQIFVVSGVFHQMSRTELKKAIEDNGGKVSS 624 Query: 680 ILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715 +S+KT+ I+ GDN G SKL KA+ LG++I++E+ F+ Sbjct: 625 SISKKTNFIVAGDNMGPSKLAKAETLGIQIISEQDFI 661 >gi|71892277|ref|YP_278011.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123747814|sp|Q492G5|DNLJ_BLOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71796383|gb|AAZ41134.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 595 Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 214/630 (33%), Positives = 348/630 (55%), Gaps = 54/630 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L +++ + + YY ++ + D +YDA+ + + + +P L P Sbjct: 4 VKQKIQKLRKKLRHWEYLYYTKNESAVSDEKYDAMLEKLNQLEQIYPHLIAESSPT---Q 60 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +IGG + K+ H +P LSL I L F RI + ++ + + E KIDG Sbjct: 61 RIGGVSQYNFKKIHHKVPMLSLNSIVASFQLLSFDKRIK--IKLHANHVMSYCCELKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN------IPEIIEVRGE 190 +++ Y++GK +YAA RGDG GEDV+ I I +P L ++ +P ++E+RGE Sbjct: 119 VAVSLLYKEGKLIYAATRGDGKIGEDVTENISTIRAVPMCLKIDSNKYGKLPYLLEIRGE 178 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-- 247 V+ISK FL LN I G KP++N RNAASG LR+L+P+ TR L+F+ +G+ Sbjct: 179 VFISKLCFLELNKITIQQGNKPFSNARNAASGSLRQLDPSVTATRPLSFYCYGISNYCGE 238 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + +E LQ G P+NN +R + + ++ YY+ +K+IRS L ++IDG+V KV+ Sbjct: 239 KELPDSHWERLQLCENWGLPINNYIRLISGVNKVLEYYSYIKTIRSNLEFNIDGIVIKVN 298 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q +LG +R+P W +++KF + +S ++ ++ Q+GRTGI+TP+A LEP+ I Sbjct: 299 SCAYQSKLGCGSRAPHWALAYKFPSEVSSAKVDNVIFQVGRTGIITPIAYLEPIVISDVT 358 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 I +HN + +K L + +GD V ++R+G+VIPK+V++I++ER + Sbjct: 359 IRKVNMHNINEVKRL-----------GLMIGDTVRIQRSGDVIPKIVEVILSERTDHVKT 407 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P FCP+C SR+ KT + + RCT GL+C AQ+ L+HFVS+ A NI G+G Sbjct: 408 IELPRFCPVCGSRI------KTWRNQSILRCTAGLSCLAQRKATLEHFVSKKAMNIYGMG 461 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + +D ++ F+ +D+F L + K+ + GFG ++ L SI + Sbjct: 462 NKIIDQLV-NQGLIFT---SSDVFRLNK------NKLLCLEGFGLENIERLLRSIEDSKK 511 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 I+L RFI++LGI VG +A +LA Y + +N A D SL + VG I Sbjct: 512 ITLARFIYALGIYGVGETVASNLAIVYKTIENLAAA----------DLQSLSNLKYVGPI 561 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 IA I F++NP N+ V+ L + P+IG Sbjct: 562 IANNIYHFFRNPDNLKNVQDL---IDPAIG 588 >gi|294815250|ref|ZP_06773893.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] gi|326443605|ref|ZP_08218339.1| NAD-dependent DNA ligase LigA [Streptomyces clavuligerus ATCC 27064] gi|294327849|gb|EFG09492.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] Length = 767 Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 240/740 (32%), Positives = 370/740 (50%), Gaps = 73/740 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR+ + L ++I H YY +P+I DSE+D L R + + P L P+ P Sbjct: 49 RARERHAELAEQIEEHRFRYYVKDQPVISDSEFDRLLRSLEELEERHPALC---TPDSPT 105 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G+ L KV H LSL+ ++ E+L + R+ R D F E K+D Sbjct: 106 QKVAGQYETDLAKVEHRERMLSLDNAFDEEELTAWAERVEREVGSPD---FHFLCELKVD 162 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YEKG+ AA RGDG GED++ IR I +P R+ IPE++E+RGEVY Sbjct: 163 GLAVNLTYEKGRLTRAATRGDGRIGEDITPNIRTIADVPDRLRGDRIPELVEIRGEVYFP 222 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 + F LN+ IA G +PYANPRN+ASG LR+ +P T L+ VHG+G Sbjct: 223 MDQFQQLNERRIAAGEQPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAREGFDIDC 282 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +R G P R ++ G+ + R ++ ++IDG+V K+DE LQ Sbjct: 283 LSHAYDLLREWGLPTARHNRVVDSLEGVREFIAHYGENRHSMEHEIDGVVVKLDEIPLQG 342 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I+ K+ ++ +TRL+DI + +GRTG +TP A++EPV + G+ + ATL Sbjct: 343 RLGSTARAPRWAIAWKYPPEEVNTRLVDILVGVGRTGRVTPYAQVEPVQVAGSEVEFATL 402 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+D +K + + +GD V++++AG+VIP+++ +V R + F P+ Sbjct: 403 HNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVELRDGTEREFVMPAE 451 Query: 434 CPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + +L P K G + RC +C AQ ERL + R + +IE G Sbjct: 452 CPECGT----ELRPMKEGDV--DLRCPNARSCPAQLRERLFYLAGRRSLDIEHFGYVAAA 505 Query: 493 FFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTKIENILGFG 531 + +PA ++ D+F+L +R +T KI + F Sbjct: 506 ALTRPLEPAEPPLKDEGDLFSLTVEQLLPIRAYVLDPDSKLPKRDPKTGEEKIATV--FA 563 Query: 532 DVSVTNLYDSINKRRNIS------LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 + +++ RNI L R + L IRHVG A +LA+ + S Q + Sbjct: 564 NQEGEPRKNALAMLRNIEAAKTRPLARVLTGLSIRHVGPVAAEALAREFRSVQRIQEATE 623 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 +A VG IIA ++ +++ + E L K + + E+ Sbjct: 624 EELAATEG----------VGAIIAASLKQWFAEEWH---QEILRKWEAAGVRMAEEGADE 670 Query: 646 E-----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 E +E +V TGTLQ R A+E + LGA V+ +S+KT ++VGDNPGSK +K Sbjct: 671 EQGPRPLEGVTVVVTGTLQDYTRDGAKEALQSLGAKVTGSVSKKTAFVVVGDNPGSKFDK 730 Query: 701 AQQLGVKIMNEEQFLFLLQQ 720 A QL V ++ E+ F LL+Q Sbjct: 731 AMQLKVPVLREDGFTLLLEQ 750 >gi|167752039|ref|ZP_02424166.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216] gi|167660280|gb|EDS04410.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216] Length = 712 Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 229/709 (32%), Positives = 367/709 (51%), Gaps = 49/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+++ L + + YH+ YY + P I D E+D L R + A P+ A DPN P + Sbjct: 13 REKIEELRRTLDYHNHKYYVENSPEISDREFDVLMRELQELEAAHPEYA---DPNSPTAR 69 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ V H P LSL +++++L +FI RI +K+ F E K DGT Sbjct: 70 VGSDLTTEFQSVEHRFPMLSLGNTYSLDELHEFIGRI-----EKELGQTEFVCELKFDGT 124 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE G + A RGDG G+DV+A IR I TIP L + P+ E+RGEV + Sbjct: 125 AISLTYEHGALLRAVTRGDGTRGDDVTANIRTIRTIPLHLQGGDYPDFFEIRGEVLMPYA 184 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F LN E G ANPRNAA+G L++ + + R L+ ++ L ++ + Sbjct: 185 SFDRLNREREENGEPLLANPRNAAAGTLKQQSSAVVAQRGLDCTLYQLAG-DDLPCTTHW 243 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E ++K GF V++ +R + I Y R LP+ DG+V KV+ ++L+++L Sbjct: 244 ECMRKASEWGFNVSDKMRICRSQAEIDDYIAFWDEERRKLPFATDGVVIKVNSYTLRREL 303 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A++PRW ++ KF +QA TRL +D Q+GRTG +TPVA L+PV + G + ATLHN Sbjct: 304 GFTAKAPRWAVAFKFKAEQALTRLESVDFQVGRTGAITPVANLDPVQLAGTTVKRATLHN 363 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 + I L DIRVGD V V++ GE+IPK+ + + R D++PF + + CP Sbjct: 364 AEQIALL-----------DIRVGDMVYVEKGGEIIPKITGVDLAARPADSRPFQYITRCP 412 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +V+ G+ + H C C Q L R+ HF+ R A +IEGLG++ ++ F Sbjct: 413 ECGTPLVK----YEGE--SKHYCPNQSHCRPQILGRIIHFIRRKAMDIEGLGEETVELLF 466 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 ++ + AD++ L+ Q ++ G+ S N+ SI + +R +F Sbjct: 467 ENG----LLHDIADLYDLRAEQLACLPRL------GEKSAENIIRSIRGSVEVPFQRVLF 516 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A+ LA ++ + + + H + LI VG IA AI+++ Sbjct: 517 ALGIRFVGETTAKYLAAHFRTL--------DAVMHATRE--ELIEADEVGGKIADAIIDY 566 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + + N+ +E L K + H+ S + K V TG R + +E + G Sbjct: 567 FADAENLRIIERLRKAGLQTEAAHKALESESLAGKNFVITGRFSGHSRDELKELIEAHGG 626 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 A +S D ++ G+ G +KL+KA +LGV++++EE+ L ++ T Sbjct: 627 KNLAAVSANVDFLVAGEKIGPAKLQKATKLGVRLISEEELLAMIASGGT 675 >gi|111225216|ref|YP_716010.1| DNA ligase [Frankia alni ACN14a] gi|122953782|sp|Q0RDH8|DNLJ_FRAAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|111152748|emb|CAJ64491.1| DNA ligase [Frankia alni ACN14a] Length = 771 Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 231/728 (31%), Positives = 371/728 (50%), Gaps = 61/728 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P A S+ R + L +E+ H YY P + D+EYD L R A+ P+L Sbjct: 51 PAVAASVAD-RARAAELARELDEHAYRYYVLDSPTVSDAEYDRLMRELTALEEHHPEL-- 107 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P K+ G + V H LSL+ +++ ++ + R R + + D Sbjct: 108 -RTPDSPTQKVAGSYSTLFTPVEHLERLLSLDNVFDDDEFHLWAARAAR--ETEVDG--- 161 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186 + E KIDG + + YE+G+ V AA RGDG +GED++ IR + ++P R+ ++PE++E Sbjct: 162 WLCELKIDGLAVDLVYEEGRLVRAATRGDGRTGEDITPNIRTLASVPTRLRGASVPELLE 221 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 VRGEV+ F LN ++A G KP+ANPRNAA+G LR+ +P TR L+ VHGLG Sbjct: 222 VRGEVFFPTEKFAELNASLVAGGGKPFANPRNAAAGSLRQKDPRVTATRPLDMIVHGLGA 281 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 A Q + G PV+ + ++++ + R + ++IDG+V K Sbjct: 282 QRGFDAASQSAAYARFAEFGLPVSTHFEVLASVGDVLAFIHRWGRARHDVEHEIDGVVVK 341 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD F+LQ++LG +++PRW ++ K+ ++ +T+L DI + +GRTG +TP LEPV + G Sbjct: 342 VDAFALQRRLGSTSKAPRWAVAFKYPPEEVTTKLRDIRVNVGRTGRVTPFGELEPVLVAG 401 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + + ATLHN D + G + + +GD V++++AG+VIP++V +V+ R Sbjct: 402 STVGLATLHNVDEV-----------GRKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGTE 450 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F P+ CP C + +VR P+ + RC AC AQ E + H SR+A +I+G Sbjct: 451 RAFVMPTHCPECGTELVR---PEGEVDI---RCPNTDACPAQLRELIFHLASRNALDIDG 504 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + +++ + DIF L + E + GFG + + + Sbjct: 505 LGYETAIALLEAD----RVGDIGDIFHL------TPESFEGLRGFGQKKIDQILRGVEAA 554 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R+ L R + L IRHVG AR+LA+ E+ ++ A L V VG Sbjct: 555 RHRPLWRLLVGLSIRHVGPTAARALAR----------ELRSLDAIAAAPAEQLAAVEGVG 604 Query: 606 DIIAQAIVEFYQNPRN------ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 IA A+V+++ + R+ I A A L + + G ++ +V TGTL Sbjct: 605 PKIASAVVDWFADARHRDIVARIAAGGASLADAGAAEG------PRPLDGVAVVITGTLD 658 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 R A E V G V+ +S+KT ++VG +PG +K +KA+ LGV +++E F LL Sbjct: 659 GWSRDSATEAVQGRGGKVTGSVSKKTAFVVVGADPGAAKYDKARSLGVPVLDEAGFAVLL 718 Query: 719 QQYNTTLR 726 ++ R Sbjct: 719 ERGADAAR 726 >gi|213618983|ref|ZP_03372809.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 544 Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 204/565 (36%), Positives = 326/565 (57%), Gaps = 44/565 (7%) Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + Sbjct: 3 PDSPTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCC 60 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189 E K+DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRG Sbjct: 61 ELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRG 120 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KT 246 EV++ + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 121 EVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEG 180 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E+ +LQ + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV Sbjct: 181 GELPDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 239 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 240 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 299 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 300 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 348 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 349 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGM 402 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 403 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 452 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + RF+++LGIR VG A LA Y+ + + A D+ L +VP VG Sbjct: 453 ATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ-------AATIDE---LQKVPDVGI 502 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE 631 ++A + F+ N + LL E Sbjct: 503 VVATHVFNFFAEESNRDVIGQLLAE 527 >gi|154492286|ref|ZP_02031912.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC 43184] gi|154087511|gb|EDN86556.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC 43184] Length = 666 Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 234/712 (32%), Positives = 375/712 (52%), Gaps = 58/712 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + ++ +L + + H+ YY S P I D E+D + + + + P+ A DP+ P + Sbjct: 4 KDKIKALREALEQHNYNYYVLSAPTISDREFDEMMKELQVLEESHPEYA---DPHSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136 +G +++ +V H P LSL ++ ++++ F RI R D N F E K DG Sbjct: 61 VGSDLSKEFEQVVHKYPMLSLGNTYSEDEVKDFYERIAR-----DLNEPFEIVAELKYDG 115 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 T I++ YE G+ V A RGDG G+DV+A ++ I ++P +++ P E+RGE+ + Sbjct: 116 TSISLTYEDGRLVRAVTRGDGTRGDDVTANVKTIRSVPLKLMGDRYPATFEIRGEILLPW 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN-FFVHGLGKTSEIFAKG 253 +F LN E +ANPRNAASG L++ NP + R L+ +F + LG+ E+ A+ Sbjct: 176 AEFDRLNKEREEQEEPLFANPRNAASGTLKQQNPAVVAARKLDAYFYYLLGE--ELPAET 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ L+ R GF + N +R N+ I Y R LP DG+V KV+ Q+ Sbjct: 234 HFDNLEAARSWGFKIPNVIRVCNSLEDIYGYIAYWDVERKNLPVATDGIVLKVNSLRQQR 293 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA LEPV + G + A+L Sbjct: 294 NLGFTAKSPRWAIAYKFQAERAVTRLNSVSFQVGRTGAVTPVANLEPVLLAGTTVKRASL 353 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432 HN D I+GL D+ +GD+V V++ GE+IPK+V + V R F Sbjct: 354 HNADIIEGL-----------DLHLGDKVFVEKGGEIIPKIVGVDVEARGLLVGDKVRFIR 402 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + ++R G+ AAH C C Q +++HFV+R A NI +G + ++ Sbjct: 403 SCPECGTPLMR----PEGE--AAHYCPNEAGCPPQIKGKIEHFVTRRAMNI-NMGPETVE 455 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++ A I+ AD++TL+ + + + D S NL S+ + + + ER Sbjct: 456 DLYE----AGYIKDTADLYTLE------IADLLRLERWADKSARNLMASLEESKQVPFER 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ LGIR VG +A+ L + S + Q + L V +G+ IA++I Sbjct: 506 VLYGLGIRFVGETVAKRLVSAFHSMEQLEQA----------SFEDLTAVDEIGERIARSI 555 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEY 669 + ++ + RN V LKE + E+ N S +++ +V +GT K R + + Sbjct: 556 IAYFADERNRTLVNR-LKEYGLQMSVPEEKLANRSEKLKGLSIVISGTFAKHSRDEYKAM 614 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 + Q G S +S KTD I+ GDN G +KLEKA +LGVKI+NE++FL ++ + Sbjct: 615 IEQHGGKNSGSVSGKTDYILAGDNMGPAKLEKAAKLGVKIINEDEFLNMIAE 666 >gi|319638552|ref|ZP_07993314.1| DNA ligase [Neisseria mucosa C102] gi|317400301|gb|EFV80960.1| DNA ligase [Neisseria mucosa C102] Length = 822 Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 259/819 (31%), Positives = 400/819 (48%), Gaps = 174/819 (21%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R +A+ P+L + P+ P ++GGE +V H +P Sbjct: 22 YYTLDAPSVPDAEYDKLFRELEALERNHPEL---KLPDSPTQRVGGEPLSGFAEVRHEVP 78 Query: 95 TLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEPKIDGTMITIRYEKGKF 148 LSL ++ +D +Y F ++ + + +EPK DG I++ Y G Sbjct: 79 MLSLTNAFSPQDENGVFDHAEMYAFDERVRGGLNGEKPEYVIEPKFDGLAISLLYRDGVL 138 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 AA RGDG +GEDV+ ++ + IP R+ NIPE+IE+RGEV + K DF ALN Sbjct: 139 TQAATRGDGTTGEDVTQNVKTVSNIPLRLHGENIPELIEIRGEVLMLKADFAALNARQAE 198 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCL 264 G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + F A+ + L + L Sbjct: 199 NGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSIARQQGGFIAEEHLQELSYCKEL 257 Query: 265 GFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 GF + +G F I +++Y +M+ R TLPY+IDG+V KV+ + Q++LG +R+ Sbjct: 258 GFSLPDG--NFGCFPNIDKVLAFYEQMQQKRPTLPYEIDGMVIKVNSLTQQRELGFISRA 315 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I+HKF ++A T + ID+QIGRTG +TPVARL+PV +GG +TNATLHN+D + Sbjct: 316 PRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR 375 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER-------------------- 421 +D+RVGD V+V+RAG+VIP+VV +I R Sbjct: 376 -----------KDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQEANVTVSDGLQDDLFAK 424 Query: 422 -------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ + L H Sbjct: 425 TPSETQAKPLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRAQGLIH 478 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQR-----------RQQ 518 F SR A +I+GLG++Q++ + +R AD++ TLQ+ ++ Sbjct: 479 FASRKAMDIDGLGQKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKEMADKASANEEE 534 Query: 519 TSTTKIENILG-FGDVSVT------------NLYDSINKRRNISLERFIFSLG------- 558 S ++I + G G+ + N+ I + L RF+F+LG Sbjct: 535 PSNSEIGDFEGETGNTLLAKNNKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGER 594 Query: 559 --------------IRH-----------VGAEIARSLAKYYLSY---------------- 577 +RH +G +A S+A ++ Sbjct: 595 TAKTLAQAFGTLEHVRHAPEPILACLPDIGTVVAHSIAHFFAQEAQQAMIDELLAVGVVP 654 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVP--------------LVGDIIA-----QAIVEFYQN 618 Q+ A I + W++ R+P L G I +A+ +Q Sbjct: 655 QSQAVTIPPLRHAEPQRWIA--RLPDFKISETKALALWELAGQSIEGLQTDKALPADWQA 712 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSE---------IENKKLVFTGTLQKIQRHKAQEY 669 R+ ALL+ + + N+ E + K V TGTL ++R +AQ Sbjct: 713 WRSKPQNAALLENMKTFFAQTLSNLQDETISDGINEAVAGKTFVLTGTLPTLKRDQAQAM 772 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 + G VS +S+KTD ++ G+ GSKLEKAQ LG+ + Sbjct: 773 IEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGIAV 811 >gi|295111571|emb|CBL28321.1| DNA ligase, NAD-dependent [Synergistetes bacterium SGP1] Length = 683 Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 238/700 (34%), Positives = 369/700 (52%), Gaps = 45/700 (6%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L +E+++H YY P I D+EYDAL R + A PD R P+ P ++GG Sbjct: 21 MAELYEELAHHARLYYDEDAPEIPDAEYDALVRELAELERAHPDRVR---PDSPTRRVGG 77 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + KV H P LSL+ +++ +L F+ RI R +DD + FT E KIDG ++ Sbjct: 78 TVLEGFEKVRHERPMLSLDNVFSAGELSSFLERI-RGDVPEDDWT--FTCEMKIDGLAVS 134 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YE G+FV A RGDG GEDV+ +R + T+P L +EVRGEV ++ + F A Sbjct: 135 LLYEDGRFVRGATRGDGRVGEDVTENLRTLRTLPMRLKGAPAGRVEVRGEVLMTWDRFNA 194 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259 LN+ +G P+ANPRNAA+G +R+L+ + R L+ F++ L + Q + L+ Sbjct: 195 LNERREELGEPPFANPRNAAAGTMRQLDSRIVAERGLDAFLYYLVDAPSLGVTRQGDALE 254 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + G P+ R+ + ++ E + R +LPY DG V K+D+ +L LG A Sbjct: 255 WLAERGLPIQPAWRRCASLAEAEAFIVEWQERRFSLPYVTDGAVVKLDDLTLWDGLGATA 314 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 +PRW +++K+ ++A TR+L ID+ +GRTG LTPVA LEPV + G ++ A LHNED I Sbjct: 315 HAPRWAVAYKYPPEEARTRILSIDVSVGRTGALTPVANLEPVRLAGTVVQRAGLHNEDEI 374 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 + +D+RVGD V V++A E+IP+VV + R +PF P CP C S Sbjct: 375 R-----------RKDVRVGDVVRVRKAAEIIPEVVAVEKECRTGAERPFEMPERCPACGS 423 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 VR + A RC +C AQ E L++F SR +I GLG++ + S Sbjct: 424 EAVRLPDE------AVLRCPNRASCPAQLKEGLRYFASRAGLDIRGLGERLAEQLIDS-- 475 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 ++ +D++ L S ++ G+ S NL ++ ++ L I +LGI Sbjct: 476 --GRVKTLSDVYDLPEEDWASLDRM------GEKSARNLMGALEASKDRPLSALIAALGI 527 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 R VG +A LA+ + S + IA V VG +IA ++ F+++ Sbjct: 528 RFVGRRVAELLAERFGSMDALSAASEAEIAD----------VEGVGPVIASSVEAFFRDE 577 Query: 620 RNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 N+ VE L + ++ S G + +E+E K VFTG L ++R +A+ V G S Sbjct: 578 ANLALVERLRERGLNFSSGDAAGHEGTELEGKSFVFTGELSSMKRAEAEALVRAHGGSAS 637 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S KT ++ G GSK +A++LGV I++EE FL ++ Sbjct: 638 GSVSSKTSFLVAGAGGGSKRRRAEELGVPIVSEEDFLRMI 677 >gi|254390812|ref|ZP_05006024.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] gi|197704511|gb|EDY50323.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] Length = 730 Score = 360 bits (923), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 240/740 (32%), Positives = 370/740 (50%), Gaps = 73/740 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR+ + L ++I H YY +P+I DSE+D L R + + P L P+ P Sbjct: 12 RARERHAELAEQIEEHRFRYYVKDQPVISDSEFDRLLRSLEELEERHPALC---TPDSPT 68 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G+ L KV H LSL+ ++ E+L + R+ R D F E K+D Sbjct: 69 QKVAGQYETDLAKVEHRERMLSLDNAFDEEELTAWAERVEREVGSPD---FHFLCELKVD 125 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YEKG+ AA RGDG GED++ IR I +P R+ IPE++E+RGEVY Sbjct: 126 GLAVNLTYEKGRLTRAATRGDGRIGEDITPNIRTIADVPDRLRGDRIPELVEIRGEVYFP 185 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 + F LN+ IA G +PYANPRN+ASG LR+ +P T L+ VHG+G Sbjct: 186 MDQFQQLNERRIAAGEQPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAREGFDIDC 245 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +R G P R ++ G+ + R ++ ++IDG+V K+DE LQ Sbjct: 246 LSHAYDLLREWGLPTARHNRVVDSLEGVREFIAHYGENRHSMEHEIDGVVVKLDEIPLQG 305 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I+ K+ ++ +TRL+DI + +GRTG +TP A++EPV + G+ + ATL Sbjct: 306 RLGSTARAPRWAIAWKYPPEEVNTRLVDILVGVGRTGRVTPYAQVEPVQVAGSEVEFATL 365 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+D +K + + +GD V++++AG+VIP+++ +V R + F P+ Sbjct: 366 HNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVELRDGTEREFVMPAE 414 Query: 434 CPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + +L P K G + RC +C AQ ERL + R + +IE G Sbjct: 415 CPECGT----ELRPMKEGDV--DLRCPNARSCPAQLRERLFYLAGRRSLDIEHFGYVAAA 468 Query: 493 FFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTKIENILGFG 531 + +PA ++ D+F+L +R +T KI + F Sbjct: 469 ALTRPLEPAEPPLKDEGDLFSLTVEQLLPIRAYVLDPDSKLPKRDPKTGEEKIATV--FA 526 Query: 532 DVSVTNLYDSINKRRNIS------LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 + +++ RNI L R + L IRHVG A +LA+ + S Q + Sbjct: 527 NQEGEPRKNALAMLRNIEAAKTRPLARVLTGLSIRHVGPVAAEALAREFRSVQRIQEATE 586 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 +A VG IIA ++ +++ + E L K + + E+ Sbjct: 587 EELAATEG----------VGAIIAASLKQWFAEEWH---QEILRKWEAAGVRMAEEGADE 633 Query: 646 E-----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 E +E +V TGTLQ R A+E + LGA V+ +S+KT ++VGDNPGSK +K Sbjct: 634 EQGPRPLEGVTVVVTGTLQDYTRDGAKEALQSLGAKVTGSVSKKTAFVVVGDNPGSKFDK 693 Query: 701 AQQLGVKIMNEEQFLFLLQQ 720 A QL V ++ E+ F LL+Q Sbjct: 694 AMQLKVPVLREDGFTLLLEQ 713 >gi|82523684|emb|CAI78466.1| NAD-dependent DNA ligase [uncultured candidate division WS3 bacterium] Length = 667 Score = 360 bits (923), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 234/704 (33%), Positives = 360/704 (51%), Gaps = 46/704 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR ++ L + I +HD YY + P I D EYDAL A+ P+L ++ P Sbjct: 7 ARARVAELRELIRHHDRKYYVDAAPEIADGEYDALMSELAALEREHPELVTADSPT---R 63 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++ G + V H++P LSLE ++ E+L F R+ + + + + +EPK+DG Sbjct: 64 RVAGAPSDGFSTVEHAVPMLSLENTYSPEELVAFDARVRKGLPGE---PVEYVVEPKLDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISK 195 I++RY +G A RGDG G+DV+A +R I +IP LS P +EVRGEV++ + Sbjct: 121 VSISLRYVEGSLDVAVTRGDGERGDDVTANVRTIRSIPSALSGRRAPATVEVRGEVFMPR 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 + F LN I P+ NPRNAA+G L+ +P++ R L + + + Q Sbjct: 181 SGFEELNGRRIEAEEAPFVNPRNAAAGSLKLRDPSEAAKRPLTAIFYQVAGPAAARIATQ 240 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E ++ M GFPV+ V A V R L YDIDG V KV+ Q + Sbjct: 241 WEAIELMGDWGFPVSPDVALARDVDAAVEACLAWDERRGGLDYDIDGTVVKVNSLEQQAR 300 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF T +L I++Q+GRTG LTPVA LEPV + G+ ++ ATLH Sbjct: 301 LGSTAKSPRWGIAYKFPAVSVRTVVLGIEVQVGRTGKLTPVAVLEPVFVSGSTVSRATLH 360 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D I+ L D+RVGD V +++ GEVIPKV ++ + R + F P+ C Sbjct: 361 NQDEIERL-----------DVRVGDTVEIEKGGEVIPKVARVVRSMRKGRPRRFRMPATC 409 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C VVR G++ A RC G +C Q R++HF SR A +I GLG + Sbjct: 410 PACGEPVVR----PEGEVDA--RC-GNESCPGQAAGRIQHFASRGAMDIRGLGSALVATL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + D++ L + ++ G+ S NL + + ++ R + Sbjct: 463 VAE----GLVSDYGDLYGLDAESLAALDRM------GERSAENLLAELEESKDRPFARVL 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 LGIRHVGA A+ LA + + A +A +G +IA +I Sbjct: 513 HGLGIRHVGARAAQVLAARFTGMKELAAASEEELAETE----------EIGPVIAASIRS 562 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F ++PRN A+ L G ++ + +V TG+L+++ R +A E V + G Sbjct: 563 FLESPRNKEALRKLETAGVNMRGGSTPGRATALAGLTVVLTGSLERMTREQAAEAVAEAG 622 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS+ +S KTD+++VG +PGSKL+KA +LG++ ++E + +L Sbjct: 623 GRVSSSVSSKTDLVVVGADPGSKLKKALELGIRTIDESELERML 666 >gi|295084199|emb|CBK65722.1| DNA ligase, NAD-dependent [Bacteroides xylanisolvens XB1A] Length = 666 Score = 359 bits (922), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 235/713 (32%), Positives = 371/713 (52%), Gaps = 63/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E+ H+ YY + P I D E+D R + A P+ +D N P + Sbjct: 4 KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 117 SISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + + +R L+ +++ L + G Y Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK L Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEDVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429 D I+GL D+ +GD V V++ GE+IPK+ + DA+ F Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 F CP C S++VR G+ AAH C AC Q +++HF+SR A NI+GLG + Sbjct: 400 FIVNCPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F++ I AD++ L + I+ + G+ S N+ I + + + Sbjct: 454 TVDMFYR----LGLIENTADLYKL------TADDIKGLDRMGEKSAENIVTGIAQSKTVP 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER IF+LGIR VG +A+ +AK + + + Q D L+ + +G+ IA Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666 Q+I+ ++ N N V LKE + R E+++S ++ + +V +G R + Sbjct: 554 QSILAYFANESNRELVNR-LKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEY 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +E + + G +S KT I+ GDN G +KLEKA++LG+ I++E++FL L+ Sbjct: 613 KELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665 >gi|303239321|ref|ZP_07325849.1| DNA ligase, NAD-dependent [Acetivibrio cellulolyticus CD2] gi|302593107|gb|EFL62827.1| DNA ligase, NAD-dependent [Acetivibrio cellulolyticus CD2] Length = 663 Score = 359 bits (922), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 236/708 (33%), Positives = 368/708 (51%), Gaps = 56/708 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L + I YH+D YY I D EYD L + P+LA + N P K Sbjct: 4 KKRIEELRKTIEYHNDRYYNQDDAEISDYEYDQLSLELRKLEQEHPELALT---NSPTQK 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG L KV H +P +SL+ +++ E++ F+ ++ Q+ D + F +E KIDG Sbjct: 61 VGGTAKRELRKVQHDVPVISLQDVFSKEEVYSFVNKMI---QELGDPT--FVVERKIDGL 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + +RY G V RGDG GE V + I +IPR + +P +EVRGEVY+S Sbjct: 116 SVVLRYNDGNLVEGITRGDGLVGESVYENLLEIQSIPRTIPTKLP-YLEVRGEVYMSAEA 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F N + G K Y RN A+G LR+L+P + R L+ +V L E Sbjct: 175 FEKANRKQEETGGKIYQTARNLAAGSLRQLDPGIVRERNLDIYVFNLEICQGKDFSSHSE 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + GFP++ T + +++ R L + IDG V KVD +K+LG Sbjct: 235 SLNWLSTQGFPISPEFMICKTADEVWECISKIGETRWQLSFGIDGAVVKVDSLDDRKRLG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++ PRW ++ K+ +Q T + DI +Q+GRTG LTP+A L+PV I G ++ ATLHN+ Sbjct: 295 ITSKVPRWAVAFKYPPEQKETVVEDIKVQVGRTGRLTPLAILKPVKIAGTTVSRATLHNQ 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI +DI++GD V++++AG++IP+V+ I +R A+ + P CP+ Sbjct: 355 DYID-----------SKDIQIGDTVIIQKAGDIIPEVLKSIPEKRPDTAKRYIIPDKCPM 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + +R+ + RCTG AC AQ + + +F S+DA NIEG G ++ Sbjct: 404 CGAPALREEDG------VEIRCTGS-ACFAQAIRGVIYFASKDAMNIEGFGPSSVEALMS 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ ADI+ L+ + TK I+G + S+ NL +I K ++ ++R I Sbjct: 457 E----GYIKDVADIYLLKDSRDELITK--GIVG-KEKSIDNLLKAIEKSKDNDIDRLITG 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 GIR+VG + AR LA NF Q+I ++ N + LI +P GDI+ + I+EF+ Sbjct: 510 FGIRNVGKQTARVLA------ANF-QDIESL---ENATYDQLIVLPDFGDIMVKDILEFF 559 Query: 617 QNPRNICAVEALLKEVS------PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 N+ + + LK+V S+ + + S K V TGTL + R +A E + Sbjct: 560 SKSENLLLI-SKLKQVGINMLSKASVNKKDDRFS----GKTFVLTGTLPSMTREEATELI 614 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G VS +S++T ++ G++ GSKL KAQ+LGV+++ EE+ +L Sbjct: 615 QMHGGKVSGSVSKRTSYVLAGEDAGSKLAKAQELGVQVIGEEELKNML 662 >gi|330752433|emb|CBL87383.1| DNA ligase [uncultured Flavobacteria bacterium] Length = 663 Score = 359 bits (922), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 225/704 (31%), Positives = 374/704 (53%), Gaps = 53/704 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ + L E+ H+ YY P I D E+D ++ + +P+L+ DPN P + Sbjct: 4 RELIFQLRNELRKHNHNYYVLDTPTISDFEFDIKLKKLQVLESQYPELS---DPNSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + + V H+ SL+ ++ DL + +R+ R D + +T E K DG Sbjct: 61 VGGAVTKNFQTVFHAQRMYSLDNSYSKSDLLDWESRVKRAV----DGPVSYTCELKYDGA 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I+I Y+ G A RGDG+ G+DV+A ++ I ++P VL + PE E+RGE+ + Sbjct: 117 SISITYKNGCLFRALTRGDGNKGDDVTANVKTIKSLPLVLQGDFPESFEIRGEIILPFKG 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGL-GKTSEIFAKGQY 255 F A+N + I+ G +P+ NPRN ASG L+ + +++ R L ++ + G+ + I K QY Sbjct: 177 FKAMNKQRISQGEEPFKNPRNTASGSLKLQDSSEVARRPLECLLYSIEGENTGI--KYQY 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+K R GF V + ++ ++ + R LPY+IDG+V KV++ Q +L Sbjct: 235 ENLEKARMWGFKVPEEAQCVDSIEAVLKFIEHWDKARYDLPYEIDGIVVKVNDLQQQAEL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A++PRW +++KF +Q STRL I Q+GRTG +TPVA LE V + G ++ A+LHN Sbjct: 295 GFTAKAPRWAMAYKFKAEQVSTRLNYISYQVGRTGAITPVANLEAVELAGTVVKRASLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I L D+RVGD V V++ GE+IPK++ + +++R A + S CP Sbjct: 355 ADQILKL-----------DVRVGDAVFVEKGGEIIPKIIGVDLSKRILGASKTKYISECP 403 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C++ ++R K G+ A H C + C Q + R++H++SR A +IEGLG + + Sbjct: 404 DCKTPLIR----KDGE--AQHYCPNTIGCPPQIIGRIQHYISRKALDIEGLGGETVAMLV 457 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 A I+ PAD++TL+ + ++ S NL + + I ER +F Sbjct: 458 ----AAGLIKDPADLYTLEIKDLLPLERM------AQKSAENLIKGVQSSKQIPFERVLF 507 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR+VG +A+ LAK+Y + ++ A D L V +G IA+++ F Sbjct: 508 GLGIRYVGETVAKILAKHYKTVHALSE------ASVED----LEAVDEIGIKIAKSVYAF 557 Query: 616 YQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++N +I + L ++S S N ++ + ++V +G ++ R++ + + Sbjct: 558 FRNDVSIRLLSRLYSYGLQLSLS-DEVLANQTTLLTGHRIVVSGVFDQVSRNELKRLIEA 616 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715 G V + +S KT +I G N G SK +KA+ LG+ ++ E+ FL Sbjct: 617 NGGKVVSSISSKTSYLIAGSNVGPSKRQKAENLGITVLTEQAFL 660 >gi|313114130|ref|ZP_07799682.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii KLE1255] gi|310623539|gb|EFQ06942.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii KLE1255] Length = 666 Score = 359 bits (922), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 232/719 (32%), Positives = 369/719 (51%), Gaps = 59/719 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E L +EQA+K + L I ++ YY P + D EYDAL R + FP L + Sbjct: 1 MELLELEQAKKRVEELRAVIEKNNRLYYDQDAPELEDFEYDALTRELKELEAQFPQLVTA 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P K+GG + L KVTH++ SL ++ ++LR F R+ + + + Sbjct: 61 ---SSPTQKVGGTASSKLPKVTHAVKMESLLDAFSYDELRDFDRRVREAGIEPE-----Y 112 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG ++ YE G+ V A+ RGDG GEDV+A +RAI +IP+ L + PE +EVR Sbjct: 113 VVEIKIDGLSCSLEYENGELVRASTRGDGVVGEDVTANVRAIRSIPKKLK-DAPEFLEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY+ F L E G P+ NPRNAA+G LR+ + +R L+ FV + + Sbjct: 172 GEVYMPHGAFQKLCAEQELQGAAPFKNPRNAAAGSLRQKDARITGSRGLSIFVFNVQQIR 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E L ++ LG PV+ + ++ ++ R+ L +D+DG V KV+ Sbjct: 232 GKTLTKHAESLDYLKSLGLPVSPRYHIVHDIEQAIAEIEQIGQNRAKLDFDMDGAVIKVN 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+ + +G + PRW I+ K+ + T L I++ +GRTG+LTP A +PV + G Sbjct: 292 DFAQRDLMGSTNKFPRWAIAFKYPPEVKETTLRSIEVAVGRTGVLTPTACFDPVFLAGTT 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHNED+I + +GD + V++AG++IP+V+ V DAQP Sbjct: 352 VARATLHNEDFIHQF-----------GLCIGDTIQVRKAGDIIPEVIG--VTHHAEDAQP 398 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P+ CP C + VV + AA RC C AQ L + HF SRDA +IEGLG Sbjct: 399 YEMPTVCPSCGAPVVHLEDE------AALRCVNP-ECPAQALRNIIHFASRDAMDIEGLG 451 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + + ADI+TL R Q + K F + S NL ++I + Sbjct: 452 TAVATQLVEKD----MVHSAADIYTLTREQLLTLDK------FKEKSADNLLNAIEASKQ 501 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDWLSLIRVPL 603 +L++ +F GIR++G + A LA+++ + Q A++I+ I D + Sbjct: 502 NNLDKLLFGFGIRNIGDKAAALLAEHFGTLQAVREASAEQISEI-----DGF-------- 548 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 G ++AQ++VEF+ V L + ++ + ++ K LV TGTL+ + R Sbjct: 549 -GGVMAQSVVEFFAKEGTTDLVHR-LADAGLNMQWKGEPKGDKLAGKTLVVTGTLETLSR 606 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++A+ + + G S +S+KT ++ G GSKL KAQ LG+ ++ E +FL ++ N Sbjct: 607 NEAEALIVKNGGKASGSVSKKTAYVVAGTAAGSKLTKAQVLGIPVLTEAEFLAMISDEN 665 >gi|161485980|ref|NP_737948.2| NAD-dependent DNA ligase LigA [Corynebacterium efficiens YS-314] gi|259506289|ref|ZP_05749191.1| DNA ligase [Corynebacterium efficiens YS-314] gi|259166069|gb|EEW50623.1| DNA ligase [Corynebacterium efficiens YS-314] Length = 678 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 230/711 (32%), Positives = 359/711 (50%), Gaps = 52/711 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q R+ + L +++ YH D YY +P I D+++DAL R+ + P+LA P+ P Sbjct: 7 QLRRTWNELAEKVRYHRDLYYN-QQPEIPDADFDALFRQLQDLEEQHPELAV---PDSPT 62 Query: 76 NKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + S V H LSL+ +++ E+LR ++ R + + E K Sbjct: 63 KEVGAPVTEQSSFDNVEHLERMLSLDNVFDEEELRDWLART---------PAKRYLTELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRG 189 IDG I + Y G AA RGDG GED++A R I IP L+ IP ++EVRG Sbjct: 114 IDGLSIDLVYRNGMLERAATRGDGRVGEDITANARVIGDIPHELTATEEYPIPAVLEVRG 173 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EV+I DF +N + I G KP+ANPRNAA+G LR+ NP D+ R L HG+G + Sbjct: 174 EVFIPIEDFADVNAQRIEDGGKPFANPRNAAAGSLRQKNPEDVKKRRLRMITHGIGYSEG 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + G P ++ T +V R +++DGLV KVD+ Sbjct: 234 FQPASQHDAYLALAAWGLPTSSYTEAVETADAVVDKVLYWADHRHDALHEMDGLVIKVDD 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q+ LG +R+PRW I++K+ ++ +T+L+DI + +GRTG +TP A +EPV + G+ + Sbjct: 294 IASQRALGSTSRAPRWAIAYKYPPEEVTTKLIDIKVSVGRTGRVTPFAMMEPVFVAGSTV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN+ +K R G + +GD V+V++AGEVIP+V+ +V R + F Sbjct: 354 SMATLHNQSEVK---------RKG--VLIGDTVVVRKAGEVIPEVLGPVVELRDGTEREF 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C S L P + A RC +C Q +RL + R AF+IE LG+ Sbjct: 403 VFPEHCPECGST----LAPTRAE-DADWRCPNTRSCPGQLSQRLTYIAGRGAFDIEALGE 457 Query: 489 QQLDFFFKSEDPAFSIRI-PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ I + A +F L + G + S L ++ +R+N Sbjct: 458 KGAQDLIRN-----GILVDEAGLFDLTEEDLLESDVYTTKAGAVNASGRKLLANLEQRKN 512 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R + +L IRHVG AR+LA Y S Q + +A + VG I Sbjct: 513 TDLWRVLVALSIRHVGPTAARALAGRYRSMQKLVDAPVDELAETDG----------VGMI 562 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IAQ+ ++++ + V+ + + +E +V TG L+ R + Sbjct: 563 IAQSFKDWFEVDWHRAIVDTWAAAGVTMEDAETEQLEQTLEGLTIVVTGGLEGFTRDSVK 622 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + G S +S+KTD ++VG+N GSK KA++LG+ I++EE F+ LL Sbjct: 623 EAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLTILDEEAFVRLL 673 >gi|260436246|ref|ZP_05790216.1| DNA ligase, NAD-dependent [Synechococcus sp. WH 8109] gi|260414120|gb|EEX07416.1| DNA ligase, NAD-dependent [Synechococcus sp. WH 8109] Length = 680 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 225/697 (32%), Positives = 355/697 (50%), Gaps = 49/697 (7%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P++ D+ YD L R + P L R P+ P ++GG+ V H + Sbjct: 21 AYYVLDAPVMEDAVYDRLYRELLELEQNDPGLQR---PDSPTQRVGGDPAEGFTNVEHRV 77 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 LSL+ +N +DLR + R+ + + +D + E KIDG + + Y G AA Sbjct: 78 GMLSLDNAFNRDDLRAWHERLLKVLDRPNDTRLPLVGELKIDGNALALSYRNGVLERAAT 137 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG GE+++A +R I +IP L + N PE +EVRGE +I F A+N E G Sbjct: 138 RGDGSRGEEITANVRTISSIPLRLQIENPPEWVEVRGEAFIPDATFAAINAEREQRGEAL 197 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNA +G LR+L+P + R L+FF + L + GQ+ L+ + GF VN Sbjct: 198 FANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPGDAQPPGQWAALEWLNTAGFRVNPN 257 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 I + + + R LPY DG+V K+D LQ + G ++PRW I+ K+ Sbjct: 258 RELCGELAAIQRFCDHWEQGRHDLPYATDGVVVKLDNLQLQDEAGFTQKAPRWAIALKYP 317 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++A TRLL I Q+GRTG +TPVA E V + G ++ ATLHN D I L Sbjct: 318 AEEAPTRLLRIGAQVGRTGAITPVAEFEAVALAGTSVSRATLHNADRIAEL--------- 368 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+ +GD ++V++AGE+IP+VV ++ R DA P P CP C S +VR+ + Sbjct: 369 --DLHLGDTIVVRKAGEIIPEVVRVLPELRPSDATPVQLPQQCPECGSNLVREGDE---- 422 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 AA RC +C A L+H+VS+ A +++GLG + ++ + + AD++ Sbjct: 423 --AATRCVNS-SCPAILRGGLRHWVSKSALDVDGLGSKLIEQLVER----GLVGSLADLY 475 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L S ++ GD S TNL +++ + R ++ LGIRH+G A++LA Sbjct: 476 RLDAALLASLDRM------GDKSATNLVEALEASKQQPWHRQLYGLGIRHIGEVNAKALA 529 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK- 630 + S I+++ A + + + +G I+ ++ ++ + P N ++ L Sbjct: 530 AAFFS-------IDSLAAAALEAPEQIAELHGIGPEISASLGQWLRTPANQQLLQDLRSV 582 Query: 631 EVSPSIGRHEKNVSSE--------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 E+S E+ +S+ ++ K LV TGTL + R +A+ + VS +S Sbjct: 583 ELSLEASASEQEAASQAGADADGVLQGKTLVLTGTLPNLSRSEAKALIEAADGKVSGSVS 642 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +KTD ++ G+ GSKL KA+ LGV +++E LLQ Sbjct: 643 KKTDYLVAGEAAGSKLTKAESLGVTVLSEADLTALLQ 679 >gi|193213809|ref|YP_001995008.1| NAD-dependentDNA ligase [Chloroherpeton thalassium ATCC 35110] gi|254781288|sp|B3QSH0|DNLJ_CHLT3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193087286|gb|ACF12561.1| DNA ligase, NAD-dependent [Chloroherpeton thalassium ATCC 35110] Length = 684 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 231/724 (31%), Positives = 380/724 (52%), Gaps = 71/724 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A ++ +L +EI+ H+ YY +KP I D ++DAL R + +PDL P+ P Sbjct: 5 EAEAKIRALRREINEHNYNYYNLAKPKISDYDFDALLRTLAELEAKYPDLV---TPDSPS 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE+ + V H LSL +N+ +L F+ R+ + + + + FT E K D Sbjct: 62 QRVGGEVTKNFPIVRHKTRMLSLSNTYNLGELGDFLARVAKSLESEGVQAYDFTAELKYD 121 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----------- 184 G +++ Y G V A RGDG G++++A ++ + TIP L L P Sbjct: 122 GVAVSLIYRDGLLVQGATRGDGSQGDEITANLKTVRTIP--LRLRAPASGSAFDTEKWNG 179 Query: 185 ---IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240 IEVRGEV+++K DF +N E + +ANPRNA +G L++ + ++ R L Sbjct: 180 SGDIEVRGEVFMTKADFEKINAERDE--SEQFANPRNATAGTLKQQDSREVAKRRLTMVA 237 Query: 241 HGL-GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + L G+ + G E L+K+ LGF R + I ++ +E ++ R L Y+I Sbjct: 238 YYLDGRPFADLSHG--ERLEKLAELGFYTGEAHRTCRSLQDIQAFLDEWENKRDALAYEI 295 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG V K++ Q+ LG ++SPRW I++K+A ++A T L ++ Q+GRTG +TPVA L+ Sbjct: 296 DGAVIKLNNVRYQELLGATSKSPRWAIAYKYAARRAETVLENVVFQVGRTGAITPVAELQ 355 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G++I+ +TLHN D I+ L D+ +GDRV+++++G+VIPKVV ++ Sbjct: 356 PVKLSGSVISRSTLHNLDEIRRL-----------DLHIGDRVIIEKSGDVIPKVVGVVAE 404 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R P+A+ S CP C + + N + C C AQ+ RL HF SR Sbjct: 405 KRPPEARTIEPLSTCPSCGTPLEHPENE------VIYYCPNEFGCPAQRKARLVHFASRH 458 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +IEGLG+ ++ A I P D++ +++ T+ +E F + S NL Sbjct: 459 AMDIEGLGEAVVEQLLG----AGLIGDPGDLYFIEK---TALLALER---FAEKSAQNLL 508 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 + I ++ S ER IF+LGIR+VG A LA + S ++ I + + + L Sbjct: 509 NGIEASKSRSFERLIFALGIRYVGRRTASILADRFTS-------LDTIKSASQAE---LC 558 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-----EIENKKLVF 654 +G+ IA+++ F+ P+ V+ LL ++ + R + S +VF Sbjct: 559 ETEEIGETIAKSVALFFTKPQ----VQELLGKLERAGLRLASDKKSPDAPQTFAGMTVVF 614 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG+L+ R A V + G V++ +S+KT +++ G G KL KA++LGVKI+ E +F Sbjct: 615 TGSLENFTRDDAAAKVGERGGKVTSTVSKKTSLVVAGKEAGGKLAKAEKLGVKIVTEAEF 674 Query: 715 LFLL 718 +L Sbjct: 675 QTML 678 >gi|324991571|gb|EGC23504.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK353] Length = 652 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 232/700 (33%), Positives = 374/700 (53%), Gaps = 59/700 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F R+ +K+ + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRV-----RKEFPQVSYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ + S A Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQADSQE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E+L K+ LGF VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++L Sbjct: 229 EVLNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + + PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EALEVPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D+ + R + ++EN F + S LY +I + S ER +F Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614 LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTY 549 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQ 672 F Q I E L+E ++ + +++ + +V TG LQK+ R++A+E + Sbjct: 550 FEQEGSQILLAE--LQEAGVNLDYLGQKAAADAVLSGMTVVLTGKLQKLTRNQAKEKLQS 607 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 LGA VS +S+KTD+++ G + GSKL+KAQ+LG++I +E+ Sbjct: 608 LGANVSGSVSKKTDLVVAGQDAGSKLDKAQELGIEIRDED 647 >gi|224826983|ref|ZP_03700081.1| DNA ligase, NAD-dependent [Lutiella nitroferrum 2002] gi|224600816|gb|EEG07001.1| DNA ligase, NAD-dependent [Lutiella nitroferrum 2002] Length = 815 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 234/742 (31%), Positives = 389/742 (52%), Gaps = 90/742 (12%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQA + ++ L ++ + YY+ +P + D EYD L R +A+ A P+L R++ P Sbjct: 12 EQAVQRIAELVPLLNRYSREYYERDEPTVPDVEYDRLYRELEALEAAHPELRRADSPT-- 69 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD-------DNSIF 127 ++GG VTH++P LSL ++ D F R Q + + Sbjct: 70 -LRVGGAPLAEFSSVTHAVPMLSLNNAFSDLDAADFEQRHAELIQFDERVRKALGGAEVE 128 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186 + ++PK DG +++ Y G V A RGDG SGE+V+ +R + IP L++ + P ++E Sbjct: 129 YAVQPKFDGLAVSLLYRDGVLVQGATRGDGFSGENVTENLRTVRAIPLRLTIEHPPALLE 188 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL- 243 VRGEV + K DF LN E A G K +ANPRNAA+G LR+L+ + IT R L+FF + + Sbjct: 189 VRGEVLMLKRDFEQLNAEQAARGDKTFANPRNAAAGSLRQLD-SRITARRRLSFFAYAIA 247 Query: 244 ---GKTSEIFAKGQYEMLQKMRCLGFP-VNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYD 298 G + + + + L + LG P V +R G+ +YY + R++LPYD Sbjct: 248 QVEGADWPVSHQAELDWLHR---LGIPLVPAELRPVVRGVAGLAAYYEAILRQRASLPYD 304 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV++ + Q+ LG +R+PRW I+HKF ++A T + I+ Q+GRTG +TPVARL Sbjct: 305 IDGVVYKVNDRAQQEALGFVSRAPRWAIAHKFPAEEALTLVEAIEEQVGRTGAITPVARL 364 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV +GG +TNATLHNED ++ +D+RVGD V+V+RAG+VIP+VV +++ Sbjct: 365 KPVFVGGVTVTNATLHNEDEVR-----------RKDVRVGDTVIVRRAGDVIPEVVAVVL 413 Query: 419 NER---------------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463 R P + P+ CP+C S VVR+ G+ +A RC+GGL Sbjct: 414 ERRPMRPVAGGDLFSSGDEPQHPAYRLPTACPVCGSHVVRE----EGEAIA--RCSGGLI 467 Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLD-----FFFKSEDPAFSIRIPADIFTLQRRQQ 518 C AQ+ + ++HF R +I+GLG++ +D + S +++++ AD+ ++ R Sbjct: 468 CRAQRSQAIQHFAGRRMMDIDGLGERYIDNLVEFGYVNSVADLYTLQL-ADLLEMKHRAD 526 Query: 519 TSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 + + G ++ NL +I R +L R +F+LGIRHVG A++LA + Sbjct: 527 ERDGVVPETVQKGQIATKWAENLLAAIAASRRPTLARLLFALGIRHVGESTAKTLADWLG 586 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 + + ++A D +G ++A+AI +F+ N +EALL+ V P Sbjct: 587 RLELIRRAPAPLLAALPD----------IGGVVAEAIADFFAEDNNETVLEALLRHVQPG 636 Query: 636 IGRHEKN--VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-- 691 H + ++ ++ L+ + ++ ++Q+ Q+ + + S + +++ + Sbjct: 637 -DEHAPSPKLAERLQPAALLARLGIPRLTELRSQQLAGQIAGLAALAASERRELMQLDLP 695 Query: 692 -----------DNPGSKLEKAQ 702 D PG + E +Q Sbjct: 696 ADVFNALADWLDEPGRRAELSQ 717 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 4/149 (2%) Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP---RNICAVEALLKE 631 L Q A +I + A + L+++ L D+ A+ ++ P + + +L+ Sbjct: 666 LRSQQLAGQIAGLAALAASERRELMQLDLPADVF-NALADWLDEPGRRAELSQLASLVDS 724 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + + + + +E K LV TGTL + R +A+E + G V+ +S+KT ++ G Sbjct: 725 ILADLPTQPSSANLLLEGKTLVLTGTLPTLSRDQAKELIEAAGGKVAGSVSKKTHYVVAG 784 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GSKL KA++LGV +++E L LL Q Sbjct: 785 EAAGSKLAKAEELGVPVLDEAGLLALLDQ 813 >gi|229496499|ref|ZP_04390213.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406] gi|229316396|gb|EEN82315.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406] Length = 671 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 228/714 (31%), Positives = 376/714 (52%), Gaps = 58/714 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L EI H+ YY S P+I D E+D L ++ + P+L P P ++ Sbjct: 6 ERIEQLRSEIEQHNYRYYVLSTPLISDVEFDRLMQQLIDLEAQHPELIT---PTSPTQRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + N S V HS+P LSL +N +++R+F R++ + S+ E K DG Sbjct: 63 GSDRNPSFVSVRHSVPMLSLSNTYNYDEVREFWHRLH-----SGNGSLTLDCELKFDGLS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 I + Y G+ A RGDG G+DV+ IR I +IP R+L NIP +EVRGE+ + ++ Sbjct: 118 IAVVYLNGELSQAITRGDGIEGDDVTNNIRTIRSIPLRLLGENIPPRVEVRGEILLPYDE 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQY 255 F +N + +A G+ P+ANPRNAASG L++L+ + ++ R FF + L +I Sbjct: 178 FERINSQRLAEGKDPFANPRNAASGTLKQLDTSVVSERRLDAFFYYLLVNGLDI--DSHA 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L + G V++ Q +T I ++ + + R +LP+ DG+V KVD +LQ+ + Sbjct: 236 ERLHLAKSWGIKVSDYSAQCSTLEDIYAFIDHWDTARRSLPFATDGIVLKVDSLALQQTI 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+ PRW I++K+ ++AST+L+D+ Q+GRTGI+TPVA L P+ I G ++ ATLHN Sbjct: 296 GFTAKGPRWAIAYKYQPERASTQLIDVSYQVGRTGIITPVANLAPILISGTVVRRATLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D+I LD K D V V++ GE+IPK+ + + R DA P FPS CP Sbjct: 356 ADFILSLDLHQK-----------DYVYVEKGGEIIPKIAGVDKSLRQSDALPIVFPSTCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +++ G++ + C L C Q ++H+ R A +I +G + +D + Sbjct: 405 DCGTTLIK----AEGEV--GYFCPNKLGCPMQIKGSIEHYTQRKAADIT-IGPETIDALY 457 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 F ++ D++ L + I ++ GF + + NL SI + ++ +F Sbjct: 458 SR---GF-VKSICDLYRL------TADDILSLDGFKECATGNLLGSIEQSKSRPFPAILF 507 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR+VG +A+ L + + S + + L + +G+ IA++IV F Sbjct: 508 GLGIRYVGENVAKILTRTFNSIETLMEASQE----------ELQTIDGIGERIAESIVSF 557 Query: 616 YQNPRNICAVEALLKEVSPSIGRH-----EKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + + RN + A LKE ++ + +S +E K +V +GT + R + + + Sbjct: 558 FADERNQKIIAA-LKEFGVTLSNPVEEGISEAISRPLEGKSIVISGTFSQHTRDEYTQII 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 QLG + +S+KT I+ G++ G SK EKA LG+ +++E++FL L+ NT Sbjct: 617 EQLGGKKVSSISQKTSFILAGEDMGPSKREKALSLGIPLLSEDEFLALVDLPNT 670 >gi|291288208|ref|YP_003505024.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809] gi|290885368|gb|ADD69068.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809] Length = 652 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 238/703 (33%), Positives = 381/703 (54%), Gaps = 65/703 (9%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +++Y+ YY P++ D+EYD L I P + + P+ ++G + Sbjct: 6 LVDKLNYYSKKYYVEDDPVVADAEYDKLYNELLRIEAEDPSIISHDSPS---QRVGDKPV 62 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 L VTH I LSL ++ E+L KF+ I+ + + +EPKIDG + + Y Sbjct: 63 TGLENVTHEIKLLSLSNAYSREELEKFVENIWDEYPGAE-----IVVEPKIDGAAMVLTY 117 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 E GK V A RGDG +GEDV+ IR I ++P L + + +RGEV++ F LN Sbjct: 118 EDGKLVRGATRGDGTTGEDVTHNIRTIRSLP--LEIEKSGRMIIRGEVFMPVASFERLNR 175 Query: 204 EMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL--GKTSEIFAKGQYEMLQK 260 G K +ANPRNAA+G L+ L+ T R L+ F++G+ G T + ++ Sbjct: 176 LKGEKGEKLFANPRNAAAGTLKLLDSKTAYERGLDVFLYGMDMGGTEH-----HLKDMEL 230 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 M+ LGF +N R+ N F I ++ + S R++L YDIDG V KVD + Q+ LG + Sbjct: 231 MKSLGFNINEMTRKFNNFEDIWAHVEYIGSRRNSLEYDIDGAVIKVDSKAYQRSLGSTIK 290 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 SP+W I++K+ ++A T L D+D Q+GRTG +TPVA+LEPV + G+ I+NATLHNED I Sbjct: 291 SPKWAIAYKYPAQEAVTILRDVDFQVGRTGSITPVAKLEPVFLAGSTISNATLHNEDEIA 350 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 L I++GD+V +++ G++IPKVV I++ER + F S CP+CQS+ Sbjct: 351 RL-----------GIKIGDKVTIRKGGDIIPKVVRPIIDERDGSERDIEFLSNCPVCQSK 399 Query: 441 VVR---DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + + D+N K C + C AQ+ +L HF SR A +I+G G+ ++ Sbjct: 400 LQKEETDINRK---------CINPV-CPAQRKLKLLHFASRKAMDIQGFGEALVNKLVDD 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + + ADI+ ++ K E+ G+G+ SV L+++I + ++ ++ L Sbjct: 450 GE----LHDVADIY----EKRFDYLKEED--GYGEKSVQKLHEAIENSKKKPFDKVLYGL 499 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVG A+ LA+Y+ +I+ +++ + + +L+ V +G A AIV + Sbjct: 500 GIRHVGERTAQVLAEYF-------GDIDKLVSADEE---ALVNVRDIGSETAGAIVNSFA 549 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-KKLVFTGTLQKIQRHKAQEYVTQLGAV 676 N ++ + LK+ +K +S++ N K V TGTL + R ++ + G Sbjct: 550 ND-DLSNIINRLKKSGLCFTAEKKEKASDVLNGKTFVVTGTLS-LPRDYFKKVIESNGGK 607 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 V + +S K D ++VG+N GSKLEKAQ+LGV I++E +L+ Sbjct: 608 VLSAVSGKLDYLLVGENAGSKLEKAQKLGVAIIDESGLTKMLK 650 >gi|291296053|ref|YP_003507451.1| DNA ligase NAD-dependent [Meiothermus ruber DSM 1279] gi|290471012|gb|ADD28431.1| DNA ligase, NAD-dependent [Meiothermus ruber DSM 1279] Length = 666 Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 233/709 (32%), Positives = 372/709 (52%), Gaps = 52/709 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++ + L + I YH+ YY KP I D+EYD L + A+ A P+L P+ Sbjct: 1 MQTPKQRIMELRELIRYHNYRYYVLDKPEISDAEYDRLLQELRALEEAHPELI---IPDS 57 Query: 74 PLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G + + F V H SL ++ +D+ F I RF +++ + LE Sbjct: 58 PTQTVGSAILETPFTPVPHPTRMYSLGNAFSQDDIADFEASINRFLGREESRE--YVLEY 115 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG + + YE+G F RGDG +GEDV+ + AIP IPR L P +EVRGE+Y Sbjct: 116 KIDGLSVNLIYEEGVFRQGLTRGDGLTGEDVTPNLLAIPDIPR--QLPQPLDLEVRGEIY 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + FL LN ++ G P+ NPRNAA+G LR+ +P +R L +G+G+ + Sbjct: 174 LPIQTFLELNTQLEEAGEPPFKNPRNAAAGSLRQKDPRISASRGLRGLFYGVGRPESLGV 233 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E+L+K+ LGF V+ + GI Y M + R +LP++ DG+ K++ SL Sbjct: 234 GTQQELLEKLGQLGFSVDPHYQVVRGVEGIEQGYQAMLAARKSLPFEADGVTVKLNNLSL 293 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +LG A++PR+ I++KF ++ +TR+L + Q+GRTG +TPVA LEPV + G+ ++ Sbjct: 294 WSELGYTAKTPRFAIAYKFPAEEKTTRVLRVIFQVGRTGRVTPVAELEPVFLDGSTVSRV 353 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNE Y++ L +R+GD VLV ++G VIP+V+ ++ A P +P Sbjct: 354 TLHNESYVQEL-----------GLRIGDTVLVHKSGGVIPEVLRVVTEAPRGHA-PVEWP 401 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C + + +GK+ H C L C A+ E ++HF SR A +I+GLG++ + Sbjct: 402 THCPECGTAL-----ELSGKI---HLCPNPL-CPAKAFEAIRHFASRRAMDIQGLGEKLI 452 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + ++ +R AD++ L++ + + + S NL + I ++ LE Sbjct: 453 EQLLET----GLVRDAADLYNLKKEDIAALERK------AEKSAQNLIEQIEASKSRGLE 502 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R +F+LGI VG AR+LAK + +++I+ ++ L VP + + AQA Sbjct: 503 RLLFALGIPQVGESTARALAKRF-------GHLDSILKATVEE---LDAVPDIAETTAQA 552 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 I + P +E L+ EK S +E V TG L + + A++ Sbjct: 553 IHQALARPEMQSFIER-LRAAGLVFEAREKQQSQALEGLTFVLTGELSRPREEVARQLEA 611 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GA +S +SRKT +I G GSKL KA++LG+ I++E LL+Q Sbjct: 612 H-GAKISGSVSRKTSYVIAGPGAGSKLSKAKELGIPILDEAGLRALLEQ 659 >gi|325297787|ref|YP_004257704.1| DNA ligase [Bacteroides salanitronis DSM 18170] gi|324317340|gb|ADY35231.1| DNA ligase [Bacteroides salanitronis DSM 18170] Length = 667 Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 233/707 (32%), Positives = 369/707 (52%), Gaps = 54/707 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +E+ H+ YY + P+I D E+D L R + P+ DPN P ++G Sbjct: 7 IDQLREELHLHNYKYYVENAPVISDQEFDHLMRELQDLEARHPE---HYDPNSPSVRVGS 63 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 ++N + +V H P LSL ++ ++ +F RI K + E K DGT I+ Sbjct: 64 DINKNFVQVEHRYPMLSLGNTYSQAEVTEFYERI----AKALNEDFEICCELKYDGTSIS 119 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFL 199 + YE GK V A RGDG G+DV+ ++ I IP VL + P E+RGEV + F Sbjct: 120 LTYENGKLVRAVTRGDGVRGDDVTDNVKTIRAIPLVLHGDGYPRQFEMRGEVLMPWKVFE 179 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN-FFVHGLGKTSEIFAKGQYEM 257 LN E +ANPRNAASG L+ N ++ R L+ + + LG+ + G YE Sbjct: 180 ELNRERELREEPLFANPRNAASGTLKLQNSAEVAARKLDSYLYYMLGEN--LPHDGHYEN 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ+ GF V++ R+ T I + N R LP DG+V KV+ Q+ LG Sbjct: 238 LQEAARWGFKVSHVTRKVKTLQEIFDFINYWDVERKNLPVATDGIVLKVNSLRQQRNLGY 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+SPRW I++KF ++A TRLL + Q+GRTG +TPVA LEPV + G ++ A+LHN D Sbjct: 298 TAKSPRWAIAYKFQAERALTRLLKVTYQVGRTGAVTPVANLEPVQLAGTVVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I L D+ +GD V V++ GE+IPK+ + V R ++ +F + CP C Sbjct: 358 IIASL-----------DLHIGDNVYVEKGGEIIPKITGVDVASRPEGSEKVTFITHCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +VR + AA+ CT +C Q +++HF+SR A NIEGLG + +D F++ Sbjct: 407 GSPLVRYEDE------AAYYCTNESSCPPQIKGKIEHFISRRAMNIEGLGPETVDQFYQE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I AD++TL+ ++ G+ S N+ I + R + ER +F+L Sbjct: 461 ----GLIHDVADLYTLKAEDLVRLERM------GEKSAENIIQGIARSREVPYERVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ +A+ + S + A DD LI V +G+ IA +I+ ++ Sbjct: 511 GIRFVGETVAKKVARAFRSIEALA-------TATLDD---LIHVDEIGEKIAGSILRYFA 560 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + +N +E L+ + E++++ +++ K +V +G + R + +E + + G Sbjct: 561 DEKNRNLIER-LRTAGLKLEADEEDLAGHTDKLQGKSIVISGVFARHSRDEYKEMIEKHG 619 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 +S+KT I+ G+N G SKLEKA+ L + +M E++FL ++ + Sbjct: 620 GKNVGSISKKTSFILAGENMGPSKLEKARALNIPVMGEDEFLAMVGE 666 >gi|291569184|dbj|BAI91456.1| DNA ligase [Arthrospira platensis NIES-39] Length = 683 Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 226/716 (31%), Positives = 366/716 (51%), Gaps = 52/716 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I Q +L Q SY YY PI+ D YD L R + + +P+L P+ Sbjct: 12 ISQKLAQLRLTVQRASY---AYYVLDDPIMEDGVYDRLYRELQELENQYPELI---SPDS 65 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + VTH+IP SLE +N+ +L+ + + RF + E K Sbjct: 66 PTQRVGEKPAAQFQSVTHNIPLYSLENAFNMAELQAWDEKWRRFLGDSLPQDPKYICELK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 IDG+ I + Y G V RGDG +GED++ ++ I +IP L L N P ++EVRGE + Sbjct: 126 IDGSAIALTYHNGILVRGVTRGDGVTGEDITQNVKTIRSIPLKLHLDNPPPVVEVRGEAF 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 +S + F+ +N E G +ANPRNAA+G LR+L+P + R L+FF + L S Sbjct: 186 LSNHIFVQINQERQQTGEPLFANPRNAAAGTLRQLDPRIVADRRLDFFAYTLHLDSPNL- 244 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++ L+ ++ +GF VN + + + Y++ + R LPY DG+V K++ SL Sbjct: 245 HDHWDCLELLQKMGFKVNPNRQLCQSLLEVQQYFDAWDTQRRELPYMTDGVVVKLNSLSL 304 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 QKQLGE + PRW I+ K+ ++ T+++ + Q+GRTG LTPVA LEP+ + G + A Sbjct: 305 QKQLGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTVKRA 364 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+D + L D+ +GD V+V++AGE+IP+VV ++ + R A+ + P Sbjct: 365 TLHNQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLVTMP 413 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C V++ P A RC +C A + H+ R A +I G+G++ + Sbjct: 414 THCPECGETVIK--TPAE----AVTRCINS-SCPAIVRGSIIHWCQRPALDINGIGEKLV 466 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 ++ +R AD++ L Q ++ G+ S + +I + Sbjct: 467 QQLVDAQ----LVRSVADLYDLNMDQLLELDRM------GEKSAQKILAAIATSKQQPWH 516 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++ LGIRHVG A+ LA+ + S Q+ A + I V +G IA + Sbjct: 517 RVLYGLGIRHVGKANAQLLAQNFPSCQSLAAASSAQIEG----------VYGIGAEIATS 566 Query: 612 IVEFYQNPRNICAVEAL----LKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + +++QNP NI + L L+ S PS + + K V TGTL + R +A Sbjct: 567 VYQWFQNPANISLCDRLQQAGLQLTSVPSTAPKSTHQAQPFAGKTFVLTGTLPTLSRDQA 626 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + G V+ +++K D +++G+ PGSKL+KAQ L + ++E FL +++ N Sbjct: 627 KSMIENAGGKVTNSVTKKVDYLLLGEKPGSKLKKAQDLAIANLSESDFLAMIKSAN 682 >gi|184201319|ref|YP_001855526.1| NAD-dependent DNA ligase [Kocuria rhizophila DC2201] gi|254781351|sp|B2GL64|DNLJ_KOCRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183581549|dbj|BAG30020.1| NAD(+)-dependent DNA ligase [Kocuria rhizophila DC2201] Length = 766 Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 236/758 (31%), Positives = 372/758 (49%), Gaps = 80/758 (10%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P EAL R+E + L + YY + +P+I D+EYD L R + P+L Sbjct: 25 PSEAL-----REEYAQLSDRVREARAAYYVHDQPVISDAEYDQLYRSLEEFEALHPELKA 79 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-FWQKKDDNSI 126 ++ P ++GGE+ + V H SLE +++ ++L ++ R + + + Sbjct: 80 NDSPT---QEVGGEVGAAFSPVKHLEKMYSLEDVFSTDELVAWLERAQKQVAELPGAPEV 136 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEII 185 + E KIDG + + Y G V AA RGDG +GED++ + I TIP+ LS N+PE + Sbjct: 137 AWLSEVKIDGLAVNLLYRDGVLVRAATRGDGTTGEDITHNVATIKTIPQRLSGENLPEEV 196 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EVRGEV+IS DF LN+ M+ GR P+ANPRNAA+G LR+ +P R L+ FVHG+G Sbjct: 197 EVRGEVFISSKDFRTLNEAMVEEGRAPFANPRNAAAGSLRQKDPQVTARRPLSMFVHGIG 256 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + + Q E + +R G PV+ R +T ++ + E R L ++IDG+V Sbjct: 257 YVRGVDLETQSEAYEILRGWGLPVSPYSRVLSTVAEVLEFIAEFGDKRHALLHEIDGIVV 316 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD+ Q +LG +R PRW +++K+ ++ +T L+DI + +GRTG +TP ++PV + Sbjct: 317 KVDDRRTQFRLGYTSRVPRWAVAYKYPPEEVNTTLVDILVNVGRTGRVTPFGLMDPVRVA 376 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ + ATLHN+D ++ + + +GD V++++AG+VIP++V +V R Sbjct: 377 GSTVEMATLHNQDMVR-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVALRDGS 425 Query: 425 AQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + F P+ CP C + L P K G + RC C +Q ER+ H R AF+I Sbjct: 426 EREFVMPAECPSCGT----PLRPAKEGDVDI--RCPNAETCPSQLKERVNHAAGRGAFDI 479 Query: 484 EGLGKQQ---------LDFFFKSEDPAFSIRIPADIFTLQ-------------RRQQTST 521 E LG++ LD +E +R A +F L RR T Sbjct: 480 EALGEEAARALTQPVPLDAPDGTELSVPPLRNEAGLFDLTPEDLRDVMVWRDARRTVTDE 539 Query: 522 TKIENIL-------------------GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 E + + ++ + + ++ L R + +L IRHV Sbjct: 540 ETGEKVQRVTPELVPYFWTKPTKARPSVPSKTTEQMFAQLEQAKDTELWRVLVALSIRHV 599 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G ARSLA S Q +A + VG +IAQA+ EF+ P Sbjct: 600 GPTAARSLATSLRSMDAIRQADPETLAGTDG----------VGPVIAQAVQEFFAEPWRR 649 Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 VE +++ +E +V TG+L+ R A+E + + G S +S Sbjct: 650 RVVEQWAAAGVRMEEEVDESTPRTLEGVTVVVTGSLEGYSRDSAKEAILKRGGKASGSVS 709 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +KT ++ GDN G+KL+KA+ LGV +++E F LL Q Sbjct: 710 KKTHFLVAGDNAGTKLDKAESLGVPVLDEAGFEQLLAQ 747 >gi|309812136|ref|ZP_07705894.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185] gi|308433823|gb|EFP57697.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185] Length = 770 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 231/724 (31%), Positives = 370/724 (51%), Gaps = 67/724 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L ++I H YY P I D EYD L R + ++P+L RS P P + Sbjct: 26 RHRAAELTEQIDGHQFAYYVKDAPTISDGEYDELLRELQGVEESYPEL-RS--PESPTQR 82 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + V H LSL+ ++ E+L ++ R+ R + + S + E KIDG Sbjct: 83 VGGTYSTEFTAVDHVERMLSLDNAFSPEELAEWGDRVVR----EANTSFHYLCELKIDGL 138 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I + YE GK V RGDG +GEDV+ +R I IP L ++P+++E+RGEV+ Sbjct: 139 AINLLYENGKLVRGVTRGDGRTGEDVTLNVRTIQGIPLELHGDDLPQLVEIRGEVFFPVK 198 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 +F ALN ++ G+ P+ANPRNAA+G LR+ +P R L VHG+G + Q Sbjct: 199 EFEALNASLVEEGKSPFANPRNAAAGSLRQKDPAKTAKRPLRMLVHGIGARTGFDITRQS 258 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E + + G P + +T + + R ++ ++IDG+V KVDE ++Q+ L Sbjct: 259 EAYELLADWGLPTSPYAEVLDTMDEVQKFVAHYGEHRHSVTHEIDGVVVKVDEIAVQRAL 318 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I++K+ ++ +T+LLDI++ +GRTG +TP ++PV + G+ ++ ATLHN Sbjct: 319 GATSRAPRWAIAYKYPPEEVNTKLLDIEVNVGRTGRVTPFGMMQPVKVAGSTVSMATLHN 378 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 + +V R G + +GD V++++AG+VIP++V +V R D + F P+ CP Sbjct: 379 ---------AFEVKRKG--VLIGDTVVLRKAGDVIPEIVGPVVEARTGDEREFVMPTHCP 427 Query: 436 ICQSRVV--RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 C + + R+ N RC G C +Q ERL SR AF+IE LG + Sbjct: 428 ACGTELAYEREGNKDI-------RCPNGRTCPSQLRERLFSLASRGAFDIEALGWEGAIS 480 Query: 494 FFKS-----EDPAFSI------RIPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLY 539 +S E F + R+P ++T ++ K+ + + G+ + NL Sbjct: 481 LLESGVLTDESTLFDLTYDDLARVP--LYTRVAKKSDPEAKVRDGRIVSATGEKLLANL- 537 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 + L R I +L IRHVG AR+LA + +I A + D +L Sbjct: 538 ---EVAKTQPLWRVIVALSIRHVGPTAARALATQF----------GSIDAIRDADEATLA 584 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK----KLVFT 655 VG +IA +I E++ + E ++ + S R E IE +V T Sbjct: 585 ATDGVGAVIAHSIKEWFA----VDWHENIVAGWAASGVRMEDERDESIEQTLAGLTIVAT 640 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G+L+ R +E + G S +S+KTD +++G+N GSK KA++LG++I++E QF Sbjct: 641 GSLENFTRDGVKEAIIARGGKASGSVSKKTDYVVLGENAGSKATKAEELGLRILDEAQFT 700 Query: 716 FLLQ 719 LL+ Sbjct: 701 RLLE 704 >gi|269127766|ref|YP_003301136.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183] gi|268312724|gb|ACY99098.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183] Length = 722 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 239/741 (32%), Positives = 368/741 (49%), Gaps = 67/741 (9%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E E AR+ + L +EI + YY +P + D+EYD L R + P+L Sbjct: 5 EGTPTEAARRH-AELSREIDEANYRYYVLDRPTLSDAEYDRLMRELRELEERHPELV--- 60 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++G + V H LSL+ E+L + R+ K+ + Sbjct: 61 TPDSPTQRVGAPIVTDFATVQHLERMLSLDNAMTGEELAAWGERVL----KEVGEQASYL 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVR 188 E KIDG + + Y G+ V A RGDG +GEDV+ IR I +P R+ P ++EVR Sbjct: 117 CELKIDGLAVALVYRDGRLVRGATRGDGRTGEDVTNNIRTIDVVPDRLSGEGWPSLLEVR 176 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-T 246 GEV+++ F +N M+ GR+P+ANPRNAA+G LR+ +P R L+ VHG G Sbjct: 177 GEVFLTVASFEQINAAMVDAGREPFANPRNAAAGSLRQKDPRITARRPLSMLVHGFGAWE 236 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + Q E + MR G PV++ + G+ Y R PY+IDG+V KV Sbjct: 237 GRELPRSQSEAYELMRSWGLPVSDLYKVVPDLEGVREYVAHYGEHRHDPPYEIDGVVVKV 296 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQ+++G +R+PRW I+ K+ ++ +T+LLDI + +GRTG +TP +EPV + G+ Sbjct: 297 DQLALQRRMGSTSRAPRWAIAFKYPPEEVNTKLLDIKVGVGRTGRITPYGVMEPVKVAGS 356 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN +G+V R G + +GD V++++AG+VIP++V + R + Sbjct: 357 TVAYATLHN---------AGEVARKG--VLIGDTVVLRKAGDVIPEIVKPVTELRDGSER 405 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 PF P CP C +R+ + K G A RC C Q ERL SR+A +IE L Sbjct: 406 PFHMPETCPECGTRLAYE---KEGD--ADIRCPNARYCPGQLRERLFFAASRNALDIEAL 460 Query: 487 G---KQQLDFFFKSEDPAFSIRIPADIFTLQ-----------RRQQTSTTKIENILGFGD 532 G L + DP +R D+F L+ R +T KI+ G Sbjct: 461 GYVAATALTQPLEPSDP--PVRNEGDLFHLKVEQLLPIRTVVRDPRTGLPKIDPKTGEQK 518 Query: 533 V-------------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579 V +V L+ + K + L R + +L IRHVG AR+LA+ + S Sbjct: 519 VVSFFATKDGRPKKTVEVLFAELEKAKTRPLWRVLVALSIRHVGPTAARALAREFGS--- 575 Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639 I+ I+ + ++ L V VG IA +I ++ + +E + + Sbjct: 576 ----IDAIMKASEEE---LAAVDGVGPAIAASIKRWFAEDWHREIIEK-WRAAGVRMADE 627 Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 + + +V TGTL+ R A E V G V+ +S+KT+ ++VGDNPGSK + Sbjct: 628 GADGPRPLSGVAVVITGTLEHYSRDSATEAVLSRGGRVTGSVSKKTNFVVVGDNPGSKYD 687 Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720 KA +LGV +++E+ F LL+Q Sbjct: 688 KAVKLGVPVLDEDGFRVLLEQ 708 >gi|225155696|ref|ZP_03724184.1| DNA ligase (NAD(+)) [Opitutaceae bacterium TAV2] gi|224803490|gb|EEG21725.1| DNA ligase (NAD(+)) [Opitutaceae bacterium TAV2] Length = 761 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 240/786 (30%), Positives = 376/786 (47%), Gaps = 118/786 (15%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 + P E +++ +++L E++ HD+ YY+ ++P I D +YD LKR + P L Sbjct: 1 MTPAEPTPVQR----IANLRAELARHDELYYRAARPEISDYDYDRLKRELANLESQHPQL 56 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--- 122 + P +IG + +V H L+L+ ++ +LR+F R+ + K++ Sbjct: 57 DLGDSPT---LRIGDDRVEGFTRVRHRQAMLTLDNTYDEGELREFHVRVVKALSKENPPP 113 Query: 123 --------------------------------------DNSIFFTLEPKIDGTMITIRYE 144 D +I + +EPKIDG I++ YE Sbjct: 114 PPPPPPSPTTTATKPTEQLDLFAPVPSPPPPPLPPATFDANIAYIVEPKIDGVSISLTYE 173 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------SLNIPEIIEVRGEVYISKNDF 198 GK A RGDG G+DV+A ++ I +P L + +P +IE+RGE+++ + +F Sbjct: 174 HGKLTQAITRGDGTEGDDVTANVKTIHGLPHTLCHAPGTTTPLPALIEIRGEIFLREEEF 233 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK------------ 245 +N + G PYANPRN A+G L++L+PT + +R L ++GLG Sbjct: 234 RRINQQQEEAGDAPYANPRNLAAGTLKQLDPTLVASRRLEIVLYGLGACEPAVPPPPPSA 293 Query: 246 -TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 T + Q +++ G P + + + E+ +R T Y DG V Sbjct: 294 PTDALGFDSQTTYQRQLIAWGLPTVEKIWSVRGIDAVWTAIQELDRLRRTFAYATDGAVV 353 Query: 305 KVDEFSLQKQLGERAR------------SPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352 K+D F+ QK LG R SPRW + KF +A TRL I IQ+GRTG+L Sbjct: 354 KLDLFAQQKILGYRGADATGRAQEARKLSPRWACAFKFPPDRAKTRLRAITIQVGRTGVL 413 Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412 TPVA L+PV + G+ + ATLHN D I +D+R+ D VL+++AGE+IP Sbjct: 414 TPVAELDPVLLAGSTVRRATLHNADEI-----------ARKDVRINDTVLIEKAGEIIPA 462 Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472 V+++IV +R PD+ P++FP CP C + VR + + H C + R+ Sbjct: 463 VINVIVEKRPPDSIPYAFPQNCPACNTPAVRIEGEVAWRCLNPH-------CPGKMRRRI 515 Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532 HFVS+ +IEGLG++ ++ I+ D+F L R Q K G+ Sbjct: 516 AHFVSKACLDIEGLGREIVELLLDHN----LIKTIPDLFRLTREQLLPLKK------SGE 565 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 NL ++I RR L R I LGI VGA A++LA+ + S ++ + A Sbjct: 566 TWSGNLINAIAARRTADLWRVIHGLGIPQVGAAAAKNLARAFRS-------LDALAAATL 618 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 D L R+P G AQA+ +++ +P N + L + + + K + Sbjct: 619 PD---LERLPDFGATTAQAVRDWFADPHNQELIADLQRAGLAPTPPAAAATNHPLAGKTI 675 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL + R +A E + G +S +S+KT ++ G GSKLEKAQ+LGV I++E Sbjct: 676 VLTGTLPTLTREQATEKIEAAGGKISTSVSKKTHYVLAGAEAGSKLEKAQKLGVPILDEA 735 Query: 713 QFLFLL 718 FL LL Sbjct: 736 AFLQLL 741 >gi|330830678|ref|YP_004393630.1| NAD-dependent DNA ligase LigA [Aeromonas veronii B565] gi|328805814|gb|AEB51013.1| NAD-dependent DNA ligase LigA [Aeromonas veronii B565] Length = 787 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 210/567 (37%), Positives = 324/567 (57%), Gaps = 35/567 (6%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R A+ P+L + P P ++GG+ + +V H IP Sbjct: 22 YYVLDNPTVPDAEYDRLMRELIALEADHPEL---KTPASPSVRVGGQPLTAFSQVRHEIP 78 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ +++ E+L+ F R+ + K D F EPK+DG +++ Y G+ V AA R Sbjct: 79 MLSLDNVFSSEELQAFEQRMSD--RLKRDVRFTFCCEPKLDGLAVSLLYVNGQLVQAATR 136 Query: 155 GDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 GDG +GE+++ +R I IP L P+ +EVRGEV++ K F A+N + +A G K + Sbjct: 137 GDGATGEEITENVRTIKAIPLALRGSGWPDRLEVRGEVFMPKAGFEAMNAKALAAGEKVF 196 Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 NPRNAA+G LR+L+ +R L+F+ +G+G E+ + L +++ G P++ V Sbjct: 197 VNPRNAAAGSLRQLDSRITASRPLSFYAYGVGVGGELLGDSHFGRLNQLKAWGLPLSPEV 256 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 + G ++++++ + R LPY+IDG+VYKVD LQ++LG AR+PRW +HKF Sbjct: 257 KLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEELGFVARAPRWATAHKFPA 316 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 ++ T L +++ Q+GRTG +TPVA+L+PV +GG ++NATLHN D I+ L Sbjct: 317 QEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNADEIERL---------- 366 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD---LNPKT 449 + VGD V+V+RAG+VIP++V ++ +R DA+ FP+ CP+C S +V++ + KT Sbjct: 367 -GVMVGDTVIVRRAGDVIPQIVAVVEAQRPSDARAILFPTECPVCGSDIVQEKKIVQQKT 425 Query: 450 G---KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 K++A +CTGGL C AQ E LKHFVSR+A +IEG+G + ++ D ++ Sbjct: 426 KTLEKILATRKCTGGLNCLAQVKESLKHFVSRNAVDIEGVGDKVIEQLV---DGGL-VKH 481 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR-RNISLERFIFSLGIRHVGAE 565 PAD+F L S + GF +VS N +D+I + S F+F LGI VG Sbjct: 482 PADLFRL------SVDDFLKLDGFAEVSAKNAFDAIQAKIGTTSSIDFLFGLGIPSVGQV 535 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNN 592 +A L N II+ N Sbjct: 536 VAERLIVELGCLDNIISAPRGIISQIN 562 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 S I K V TG+ + R K + +LG +S+ TD++I+GD GSKL+KA +L Sbjct: 708 SFIAGKSFVITGSFTFMSRDKLNSKLKELGGESKTSVSKNTDMLIMGDKAGSKLKKATEL 767 Query: 705 GVKIMNEEQFLFLLQQYN 722 G+KI+NE++ LL+ N Sbjct: 768 GIKIINEDELRSLLESEN 785 >gi|224418026|ref|ZP_03656032.1| NAD-dependent DNA ligase LigA [Helicobacter canadensis MIT 98-5491] gi|253827358|ref|ZP_04870243.1| DNA ligase, NAD-dependent [Helicobacter canadensis MIT 98-5491] gi|313141565|ref|ZP_07803758.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter canadensis MIT 98-5491] gi|253510764|gb|EES89423.1| DNA ligase, NAD-dependent [Helicobacter canadensis MIT 98-5491] gi|313130596|gb|EFR48213.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter canadensis MIT 98-5491] Length = 650 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 238/695 (34%), Positives = 372/695 (53%), Gaps = 76/695 (10%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY PI D EYDAL + P + P ++G + S K H Sbjct: 20 YYILDDPIASDEEYDALYHQIKEFEANNPTQISKDSPT---QRVGDRILESFNKSEHIER 76 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ I+N ++L+ +I R+ + D ++ FT++PK DG + + YE G A R Sbjct: 77 MWSLDDIFNTQELQDWINRVSK------DENLNFTIDPKFDGASLNLLYENGILQKATTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+V+ + IP+IP LS+ + IE+RGE I+K+DF A+N E + G +A Sbjct: 131 GDGFIGEEVTQNAKTIPSIP--LSIPYTDKIEIRGECVIAKDDFEAINQERLENGEALFA 188 Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 NPRNAA+G LR+L+ + IT R L F G+G +I + + +++K+R GF + Sbjct: 189 NPRNAAAGSLRQLD-SKITSKRKLQFIPWGVG-FCQINEESFFALMEKIRSFGFIASPFS 246 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 + + I Y + S R + P +DG+V +VD LQK LG ++PR+ ++KF Sbjct: 247 KLCSNLQAIEDSYQNLISKRDSYPITLDGMVIRVDNIPLQKSLGFTIKAPRFACAYKFPA 306 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + ++LDI +Q+GRTG++TPVA LEPV I GA ++ ATLHN D IK Sbjct: 307 IEKKAKILDIVLQVGRTGVITPVAILEPVMIEGAKVSRATLHNFDEIK-----------K 355 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 +DI + D V++ R+G+VIPK++ + R + P+ CPIC S ++ + KL Sbjct: 356 KDILINDSVILIRSGDVIPKIIKSLPTLRDGTQKQCKMPTHCPICNSELLIE-----EKL 410 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 + +C L C A+ L HF+S+ A NI+GLGK+ +D F+ I DIF+ Sbjct: 411 I---KCQ-NLNCKARVKNSLIHFISKKALNIDGLGKRIIDLLFE----LGKITKIEDIFS 462 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 LQ +E + GF D + NL ++I + + I L RFI +LGI H+G ++ LA Sbjct: 463 LQYED------LEGLEGFKDKKIHNLLNAIKQAKGIDLWRFINALGIEHIGEGASKKLAN 516 Query: 573 ------YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF-YQNPRNICAV 625 Y+ S+++F + + G+ +A ++VEF + N I + Sbjct: 517 TFGNDFYHKSFEDF------------------VVLDGFGEEMANSLVEFCHVNQERINHL 558 Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 A+L+ P + N + + N+ V TGTL + +R QE + LGA VS+ +S+KT Sbjct: 559 LAILQ---PKCNQSTTNAN--LSNQTFVITGTLSQ-KREVYQEILESLGAKVSSSVSKKT 612 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + ++ G+ GSKL KAQ+LGVK+++EE F L+Q+ Sbjct: 613 NFLLCGEEAGSKLTKAQELGVKVISEEDFWNLIQE 647 >gi|327474802|gb|EGF20207.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK408] Length = 652 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 229/698 (32%), Positives = 369/698 (52%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEKKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F R+ +K+ + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRV-----RKEFPQVSYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ +++ + Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 +L K+ LGF VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++L Sbjct: 229 AVLNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + +P PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D+ + R + ++EN F + S LY +I + S ER +F Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614 LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTY 549 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F Q I E V+ + + + +V TG LQK+ R++A+E + LG Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ Sbjct: 610 ANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647 >gi|322389291|ref|ZP_08062851.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC 903] gi|321144035|gb|EFX39453.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC 903] Length = 652 Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 230/700 (32%), Positives = 367/700 (52%), Gaps = 66/700 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL L +Y YY P + DSEYD L R + A PD P P +++ Sbjct: 6 KELVELLNRYAYE---YYTKDAPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ +K+ SI + E KIDG Sbjct: 60 GGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRV-----RKEFPSISYVCELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G V A RGDG GED++ ++ + IP VL P I VRGE Y+ + F Sbjct: 115 ISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPE--PVNITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 +N G +ANPRNAA+G LR+L+ T + R L F++ + S Q + Sbjct: 173 DRVNQIRQENGEPEFANPRNAAAGTLRQLDTTIVAKRNLATFLYQ--EVSPTDQSSQEGV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+K+ CLGF VN A I + ++ +R LPYDIDG+V KV++ ++Q++LG Sbjct: 231 LEKLACLGFVVNQERVLAEDMEQIWDFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++P+W +++KF ++ ++L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DI D V+V +AG++IP V+ ++ ++R D Q + P+ CP C Sbjct: 351 YI-----------AEKDIHQDDTVIVYKAGDIIPAVLRVVKDKRVSD-QALAIPTQCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 QS ++ + A RC L C AQ E L HF SRDA NI GLG ++ F + Sbjct: 399 QSELLHFEDE------VALRCINPL-CPAQIKEGLNHFASRDAMNITGLGPAVVEKLFAA 451 Query: 498 ---EDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 ED A R+ D+ TL+ GF + S LY++I + S E+ Sbjct: 452 QLVEDVAGIYRLTVEDLLTLE--------------GFKEKSAEKLYEAIQASKENSAEKL 497 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIRHVG++++ Q QE +++ D + + +G ++A+++ Sbjct: 498 LFGLGIRHVGSKVS----------QILLQEFHDLDQLATADPERIASIDSLGMVVAESLK 547 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVT 671 ++ + ++ LKE ++ + V+++ + +V TG L+++ R +A+ + Sbjct: 548 RYFAQEGSKRLLQE-LKEAGVNMAYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLE 606 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 LGA V+ +S+KTD+++ G + GSKL KAQ+LG+++ +E Sbjct: 607 SLGAKVTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDE 646 >gi|325687188|gb|EGD29210.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK72] Length = 652 Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 231/698 (33%), Positives = 368/698 (52%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F R+ +K+ + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRV-----RKEFPQVSYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ + S A Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQADSQE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E+L K+ LGF VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++L Sbjct: 229 EVLNKLADLGFSVNPTHILADSIEAVWKFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + + PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EALEVPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNIAGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D+ + R + ++EN F + S LY +I + S ER +F Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614 LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHTY 549 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F Q I E V+ + + + +V TG LQK+ R++A+E + LG Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ Sbjct: 610 ANVSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDED 647 >gi|269103205|ref|ZP_06155902.1| DNA ligase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163103|gb|EEZ41599.1| DNA ligase [Photobacterium damselae subsp. damselae CIP 102761] Length = 495 Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 201/533 (37%), Positives = 315/533 (59%), Gaps = 43/533 (8%) Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + K F LN + G K +ANPRNAA+G LR+L+ TR L+F+ + +G Sbjct: 1 MPKKGFEQLNQRALKKGEKTFANPRNAAAGSLRQLDSKVTATRPLSFYAYAVGIVEGREL 60 Query: 252 KG-QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +G QY+ L +++ GFP++ +R+ ++ ++ Y+ + R +L YDIDG+V KVD+ Sbjct: 61 EGSQYDRLCQLKSWGFPMSPEIRRVDSIEEVIRYHQMIGEKRESLEYDIDGVVIKVDKVD 120 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q QLG AR+PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV +GG ++N Sbjct: 121 TQLQLGFVARAPRWAIAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSN 180 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L + VGD V+++RAG+VIP++V ++ + R DA P F Sbjct: 181 ATLHNADEIARL-----------GVMVGDTVIIRRAGDVIPQIVSVVESRRPADASPVIF 229 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS+V R G+ VA RCTGGL C AQ+ E LKHFVSR A +++G G++ Sbjct: 230 PTECPVCQSKVER----IEGEAVA--RCTGGLFCQAQRKEALKHFVSRKALDVDGCGEKV 283 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + PAD+F L T+ ++ G S L D++ + +L Sbjct: 284 IEQLVDRE----MVTTPADLFRLSAGVVTALDRM------GPKSAQKLVDALGNAKETTL 333 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI+SLGIR VG A +LA Y+ + + ++ + D LI VP VG+I+A Sbjct: 334 SRFIYSLGIREVGEATAANLAHYF-------ETLEALMTASKD---QLIEVPDVGEIVAA 383 Query: 611 AIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 I F++ N+ V L++V P I + +V E K +V TG+L ++ R +A+ Sbjct: 384 HIFNFFREEHNLAVVND-LRDVGIHWPDIEKVADDVELPFEGKTVVLTGSLSQLSRTEAK 442 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 E + +LGA V+ +S+KTD+++ G+ GSKL KAQ+LG+++ +E+Q + +Q+ Sbjct: 443 EALQKLGAKVTGSVSKKTDLVVAGEAAGSKLTKAQELGIEVWDEQQLIDFMQR 495 >gi|296270799|ref|YP_003653431.1| NAD-dependent DNA ligase [Thermobispora bispora DSM 43833] gi|296093586|gb|ADG89538.1| DNA ligase, NAD-dependent [Thermobispora bispora DSM 43833] Length = 732 Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 242/741 (32%), Positives = 379/741 (51%), Gaps = 85/741 (11%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL+ L +E ++ YY P + D+EYDA R + +PDL P+ P K+G Sbjct: 23 ELAELIEEANWR---YYVLDSPTVSDAEYDAWMREIRELEERYPDL---RTPDSPTQKVG 76 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G ++ VTH SL+ ++ EDL + RI R + + F E KIDG + Sbjct: 77 GAISTEFTPVTHLRRLESLDNAFSDEDLAAWHARIQRLYGA---DVGPFLCELKIDGLAV 133 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDF 198 + YE G+ V AA RGDG +GED++ IR I +P R+ +P ++EVRGEV++ F Sbjct: 134 ALVYENGRLVRAATRGDGRTGEDITPNIRTIRNVPHRLTGDGVPSLLEVRGEVFLPVEGF 193 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG---- 253 LN++++ G++P+ANPRNAA+G +R+ +P R L VHG+G ++ G Sbjct: 194 RRLNEQLLDAGKQPFANPRNAAAGSVRQKDPRVTAQRPLKMIVHGVG----VWEGGDPPE 249 Query: 254 -QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q + +++R LG PV+ R GI Y + R Y+IDG+V KVD ++Q Sbjct: 250 SQSAVYERLRELGLPVSERYRVVEDLGGIREYIAYYREHRHDPEYEIDGVVAKVDRIAVQ 309 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG +R+PRW I+ K+ ++ +T+LLDI + +GRTG +TP A ++PV + G+ + AT Sbjct: 310 RALGSTSRAPRWAIAFKYPPEEVTTKLLDIQVGVGRTGRVTPYAVMKPVVVSGSTVERAT 369 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN + +V R G + +GD V++++AG+VIP++V +V+ R + F P+ Sbjct: 370 LHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEIVGPVVDLRDGSEREFVMPT 418 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG---KQ 489 CP C +R+ + + G A RC +C AQ ER+ RDA +IEGLG Sbjct: 419 HCPECGTRLAYE---REGD--ADLRCPNTKSCPAQLRERIFFAAGRDALDIEGLGYVAAS 473 Query: 490 QLDFFFKSEDPAFSIRIPADIF-----------TLQRRQQTSTTKIENILG-------FG 531 L ++P IR AD+F T+ R T K++ G F Sbjct: 474 ALTQPLPPQEP--PIRTDADLFDLTMDRLLPIKTVVRDPDTGLPKLDPQTGEPKVVSFFA 531 Query: 532 DVS------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 VS L + + + + L R + +L IRHVG AR+LA+++ S A Sbjct: 532 TVSGAPSKNAEKLLEQLEQAKQRPLWRILVALSIRHVGPPTARALAEHFRSIDAIAAASE 591 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP--RNIC----AVEALLKEVSPSIGRH 639 +A +G +IA AI E++ R I A + + P++ Sbjct: 592 EELAAVEG----------IGPVIAAAIKEWFSVDWHREIIERWRAAGVRMADEEPAVPEG 641 Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 + +E V TGTL R +A E +T G V++ +S+KTD ++VG+NPGSK Sbjct: 642 PRP----LEGLTFVITGTLSGYTRDEAGEAITSRGGRVASSVSKKTDFVVVGENPGSKYA 697 Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720 KA +LG+ ++E+ F LL++ Sbjct: 698 KAVKLGIPRLDEQGFQVLLEK 718 >gi|85713360|ref|ZP_01044373.1| NAD-dependent DNA ligase [Idiomarina baltica OS145] gi|85692818|gb|EAQ30803.1| NAD-dependent DNA ligase [Idiomarina baltica OS145] Length = 449 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 197/472 (41%), Positives = 286/472 (60%), Gaps = 36/472 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++EQ +EL EQ+++ ++ YY+ +P I DSEYD L R + P+L + + Sbjct: 6 TVEQRMREL---EQQLTRYNKEYYELDEPTIPDSEYDKLFRELQTLEANNPEL---KSQH 59 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF--FTL 130 P K+G + + VTH +P LSL+ ++ E+ F RI Q++ D+S+ F Sbjct: 60 SPTEKVGSKPLDAFTSVTHELPMLSLDNAFSSEEFSAFAERI----QQRVDSSVAWAFCC 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 EPK+DG ++I YE G+ V AA RGDG+SGED++A ++ I +P LS + PE +EVRGE Sbjct: 116 EPKLDGLAVSILYENGQLVRAATRGDGYSGEDITANVKTIKNVPLQLSDDAPERLEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ + F ND K +ANPRNAA+G LR+L+ + IT R L+F+ + LG SE Sbjct: 176 VFMMTDAFERFNDNARKRDEKVFANPRNAAAGSLRQLD-SRITAKRPLHFYAYSLGVVSE 234 Query: 249 I----FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 A YE LQ++ G P+N+ V++ + +YY M R L Y+IDG+VY Sbjct: 235 QDQEQLADSHYERLQQLSAWGLPINDEVKRVESVEACETYYQAMLEKRDRLRYEIDGIVY 294 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD +Q +LG AR+PRW I+ KF ++ TR+ +D Q+GRTG +TPVARLEPV++G Sbjct: 295 KVDSIRMQNELGFVARAPRWAIARKFPAQEQLTRITGVDFQVGRTGAITPVARLEPVSVG 354 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D +V R G + +GD V ++RAG+VIP+VV ++ +ER D Sbjct: 355 GVTVSNATLHNAD---------EVARLG--VMIGDTVSIRRAGDVIPQVVSVLESERPED 403 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 AQ FPS CP+C S V R G+ VA RC+GGL C+AQ+ E +KHF Sbjct: 404 AQAIEFPSHCPVCDSEVER----IEGEAVA--RCSGGLICAAQRKEAIKHFA 449 >gi|295394422|ref|ZP_06804646.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC 49030] gi|294972774|gb|EFG48625.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC 49030] Length = 740 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 240/748 (32%), Positives = 374/748 (50%), Gaps = 83/748 (11%) Query: 18 RKELSS-LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 R++L++ L +I H + YY + P I D E+D L + + A+P+LAR + P Sbjct: 22 RQKLAAELAAQIEEHREAYYVHDAPKISDKEFDELVHALEDLESAYPELARDDSPT---Q 78 Query: 77 KIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+GG + F V H SLE ++++E+L ++ R+ K F E KID Sbjct: 79 KVGGYADTEAFAPVQHVARMYSLEDVFSVEELDQWFERV----AKSVPAGTPFLSEVKID 134 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194 G + YE G+ V AA RGDG++GED++A +R I IP L + N P +E+RGEV+ Sbjct: 135 GLACNLLYENGQLVRAATRGDGYTGEDITANVRTIDDIPTTLNATNPPARVEIRGEVFFP 194 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 + F LN ++ G+ P+ANPRNAA+G LR+ +P+ R L+ VHG+ A Sbjct: 195 SDKFADLNASLVEQGKPPFANPRNAAAGSLRQKDPSITAQRPLHMLVHGIAAWQSGDAGA 254 Query: 254 QYEMLQK-----MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q Q +R G P++ R T + +Y E R L ++IDG+V KVD Sbjct: 255 QEPTQQSQVYDLLRDWGMPISPYYRVCTTQDDVHAYITEFGERRHELLHEIDGIVVKVDN 314 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG +R+PRW ++K+ ++ +T+LLDI +Q+GRTG +TP A +EPV + G+ + Sbjct: 315 IALQEELGYTSRAPRWACAYKYPPEEVTTKLLDIRVQVGRTGRVTPFAVMEPVLVAGSTV 374 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN +K R G + +GD V++++AG+VIP+V+ + R + F Sbjct: 375 SRATLHNAHEVK---------RKG--VLIGDDVVIRKAGDVIPEVLGPVTANRDGSERAF 423 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C + + K G RC C AQ RL + SR A +IE LG+ Sbjct: 424 VMPTHCPDCGAELYEQ---KEGD--KDLRCPNSETCPAQVANRLAYLASRAALDIELLGE 478 Query: 489 QQL--------DFFFKSEDPAFSIRI----PADIFTLQRRQQTSTTKIENILGF------ 530 + + KSE F + + +I ++ T +IE + F Sbjct: 479 EASLALTQPLGEPPLKSEAGLFDLTVDDLGEVEIEREVKKNGVPTGEIERVKYFFTKEEL 538 Query: 531 -------GDV--------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 G V + + D I K + L R + +L IRHVG AR +A ++ Sbjct: 539 YASGEKKGQVKKPSQPRANTLAMLDEIEKAKGQPLWRVLVALSIRHVGPTAARDIAAHFR 598 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--- 632 S + N + L+ V VG+ IAQ++V+++ + V++ K Sbjct: 599 SMDA----VRNATVED------LLEVEGVGETIAQSVVDWFAEEWHAHIVDSWAKAGVRM 648 Query: 633 --SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 P+ E +E +V TG+L R +E + G S+ +S+KTD ++ Sbjct: 649 ADEPA---EESTQPQTLEGLTIVATGSLDNFTRDGIKESIVGAGGKASSSVSKKTDYVVA 705 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G+N GSKL KAQ LGV ++NEEQF LL Sbjct: 706 GENAGSKLTKAQDLGVPVLNEEQFQQLL 733 >gi|298484007|ref|ZP_07002176.1| DNA ligase, NAD-dependent [Bacteroides sp. D22] gi|298269788|gb|EFI11380.1| DNA ligase, NAD-dependent [Bacteroides sp. D22] Length = 666 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 234/713 (32%), Positives = 370/713 (51%), Gaps = 63/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E+ H+ YY + P I D E+D R + A P+ +D N P + Sbjct: 4 KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 117 SISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + + +R L+ +++ L + G Y Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK L Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429 D I+GL D+ +GD V V++ GE+IPK+ + DA+ F Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 F CP C S++VR G+ AAH C AC Q +++HF+SR A NI+GLG + Sbjct: 400 FIVNCPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F++ I AD++ L + I+ + G+ S N+ I + + + Sbjct: 454 TVDMFYR----LGLIENTADLYKL------TADDIKGLDRMGEKSAENIVTGIAQSKTVP 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER IF+LGIR VG +A+ +AK + + + Q D L+ + +G+ IA Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666 Q+I+ ++ N N V LKE + R E+++S ++ + +V +G R + Sbjct: 554 QSILAYFANESNRELVNR-LKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEY 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +E + + G +S KT I+ GDN G +KLEK ++LG+ I++E++FL L+ Sbjct: 613 KELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKVKKLGITILSEDEFLKLI 665 >gi|302023934|ref|ZP_07249145.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05HAS68] gi|330832985|ref|YP_004401810.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3] gi|329307208|gb|AEB81624.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3] Length = 652 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 221/682 (32%), Positives = 368/682 (53%), Gaps = 59/682 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YYQ +P + D+EYD L R + A P+L P+ P +++GG+M K +H P Sbjct: 19 YYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHRVGGKMLDGFEKYSHVYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YE G V A R Sbjct: 76 LFSLQDAFSREELEAFDQRV-----RKEFPQATYICELKIDGLSISLTYEAGNLVVGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + +P L +PE ++ VRGE Y+ K F +N + G Sbjct: 131 GDGSVGENITENLKRVADVP----LTLPEAVDITVRGECYMPKASFDRVNKQRQEAGEAE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ SE A Q ++L+K+ LGF N+ Sbjct: 187 FANPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSE--ATSQSQVLEKLDALGFVTNHE 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A + + ++ R LPY+IDG+V KV++ ++Q++LG ++PRW +++KF Sbjct: 245 YCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +L +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR+GD V+V +AG++IP V+ +V++ + + PS CP CQS DL + Sbjct: 354 EKDIRIGDTVIVYKAGDIIPAVLK-VVDKYRKEQEIMPIPSHCPSCQS----DLQHYEDE 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 + A RC + C +Q + +L+HF SRDA NI GLG ++ F A + ADI+ Sbjct: 409 V--ALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLFG----AGLVHDVADIY 461 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L + + + GF + S LY +I ++ S E +F LGIRHVG++ ++ L Sbjct: 462 KL------TVDDLLTLEGFKEKSADKLYQAIQTSKSNSAECLLFGLGIRHVGSKASKILV 515 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + + + A IA + +G +IA+++ F+ + + A LKE Sbjct: 516 EKFGDLETLAFADQEAIAS----------LEGLGQVIAKSLTTFFAS-EGAQQLLAELKE 564 Query: 632 VSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 ++ + V ++ + +V TG L++++R++A+ + LGA V+ +S+KT++++ Sbjct: 565 AKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGANVAGSVSKKTNLVV 624 Query: 690 VGDNPGSKLEKAQQLGVKIMNE 711 G + GSKL KAQ+LG++I +E Sbjct: 625 AGTDAGSKLTKAQELGIEIKDE 646 >gi|312194886|ref|YP_004014947.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c] gi|311226222|gb|ADP79077.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c] Length = 755 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 229/709 (32%), Positives = 356/709 (50%), Gaps = 63/709 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK-VTHSI 93 YY + P + D+EYD L R A+ +P L P+ P K+ E LF+ VTH Sbjct: 51 YYVLAAPTVSDAEYDVLYRELVALEERYPAL---RTPDSPTQKVT-ETPSELFEPVTHLE 106 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 LSL+ ++ ++ + + R K+ + + E KIDG + + YE G V AA Sbjct: 107 RLLSLDNAFDEDEFQAWAAR-----ATKETSVAAWLCELKIDGLAVDLVYEDGVLVRAAT 161 Query: 154 RGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG GED++A IR + ++P R+ N+P ++EVRGEV+ F+ALN+ ++A G+KP Sbjct: 162 RGDGRVGEDITANIRTLRSVPARLRGPNVPALLEVRGEVFFPVAAFVALNESLVADGKKP 221 Query: 213 YANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 YANPRN A+G LR+ +P +R L +VHGLG Q + + LG P++ Sbjct: 222 YANPRNTAAGSLRQKDPQVTASRGLAMYVHGLGARRGFDPPSQSAAYEALAELGLPISPR 281 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 R +++Y E R + ++IDG+V KVD+ + Q +LG +++PRW I++K+ Sbjct: 282 YRVVGDVDAVLAYIREWGEHRHDVEHEIDGVVVKVDDLATQGRLGATSKAPRWAIAYKYP 341 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +TRL I++ +GRTG +TP LEPV + G+ + ATLHN D +K Sbjct: 342 PEEVTTRLKSIEVNVGRTGRVTPFGVLEPVTVAGSTVGLATLHNADQVK----------- 390 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 + + +GD +++++AG+VIP++V +V+ R + F FP+ CP C + +VR G+ Sbjct: 391 AKGVLIGDMIILRKAGDVIPEIVGPVVDLRDGTEREFVFPTHCPECGTELVR----PEGE 446 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC + C AQ+ E + H SR A +I+GLG + + A ++ AD+F Sbjct: 447 --ADTRCPNTVGCPAQRREAIIHLASRGALDIDGLGGESAIDLIE----AGRVKDIADVF 500 Query: 512 TLQRRQQTSTTKIENILGFGDVS--------------------VTNLYDSINKRRNISLE 551 L R T E I D + + I R+ L Sbjct: 501 HLDERSFTGMPLFERIETVRDENGKLVKGPDGKALRRSVLGKKAEQVLKGIEAARHRPLW 560 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + L IRHVG A++LA+ E+ + A L V VG IA A Sbjct: 561 RLLVGLSIRHVGPSAAQALAR----------ELRSTDAIRAASLEELAVVDGVGPTIAAA 610 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +VE++ +PR++ VE L + +V TG+L+ R A E V Sbjct: 611 VVEWFADPRHLDLVERLRAGGVTLADEGADEGPRPLAGVTVVITGSLEGYTRDSATEAVQ 670 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LG VS +S+KT +I G+N G+K +KA L V I++E LL + Sbjct: 671 NLGGKVSGSVSKKTSFVIAGENAGTKYDKAVSLKVPILDEAGLRVLLTE 719 >gi|158312936|ref|YP_001505444.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec] gi|254781334|sp|A8L538|DNLJ_FRASN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158108341|gb|ABW10538.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec] Length = 703 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 221/712 (31%), Positives = 351/712 (49%), Gaps = 48/712 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L +E+ H YY KP + D+EYDAL R +AI P+L P+ P K Sbjct: 27 RGRAAELARELEEHAYRYYVLDKPTVADAEYDALMRELEAIEERHPEL---RTPDSPTQK 83 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + G + V H LSL+ ++ E+ + R R + + E KIDG Sbjct: 84 VAGSYSTLFTPVEHLERLLSLDNVFTDEEFHAWAARAAR-----EQPVTAWLCELKIDGL 138 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 + + YE G+ V AA RGDG +GED++ +R + ++P R+ +PE++EVRGEV+ Sbjct: 139 AVDLVYEGGRLVRAATRGDGRTGEDITPNVRTLASVPSRLRGPAVPELLEVRGEVFFPTE 198 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255 F LN ++ G+ P+ANPRNAA+G LR+ +P +R L+ VHGLG Q Sbjct: 199 RFTELNAALVEAGKAPFANPRNAAAGSLRQKDPRVTASRPLDMIVHGLGAHQGFDVASQS 258 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++ LG PV+ + ++++ R + ++IDG+V KVD+F Q++L Sbjct: 259 GAYARLAELGLPVSARHEVLASVEDVLAFVRRWGEHRHDVEHEIDGVVVKVDDFGQQRRL 318 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +++PRW ++ K+ ++ +TRL DI + +GRTG +TP LEPV + G+ + ATLHN Sbjct: 319 GATSKAPRWAVAFKYPPEEVTTRLRDIQVNVGRTGRVTPFGVLEPVKVAGSTVAMATLHN 378 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D + G + + +GD V++++AG+VIP++V +V+ R + F P+ CP Sbjct: 379 IDEV-----------GRKGVLIGDTVVLRKAGDVIPEIVSPVVDLRDGSERAFVMPTHCP 427 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C +++VR P+ + RC ++C AQ E + H SR A +I+GLG + Sbjct: 428 ECGTQLVR---PEGEVDI---RCPNTVSCPAQLRESVFHLASRGALDIDGLGYETATVLL 481 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 I D+F L + E + GF D + + + R+ L R + Sbjct: 482 AE----GRIHDIGDVFHL------APESFEGLRGFADKKIEQILRGLEAARDRPLWRLLV 531 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 L IRHVG AR LA+ S A +A V VG IA A+V++ Sbjct: 532 GLSIRHVGPTAARGLARELRSLDAIATAPAERLAA----------VDGVGPKIADAVVDW 581 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + +PR+ V + ++ +V TGTL R A E V G Sbjct: 582 FADPRHRDIVARIASGGVRLADEGAGEGPGPLDGVVVVITGTLDGWSRDTATEAVQSRGG 641 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 V+ +S+KT ++ G +PG SK +KA+ L + +++E F LL+ R Sbjct: 642 KVTGSVSKKTTFVVAGADPGASKYDKARTLKIPLLDEAGFAVLLRDGADAAR 693 >gi|256844676|ref|ZP_05550161.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 125-2-CHN] gi|256613217|gb|EEU18421.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 125-2-CHN] Length = 668 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 222/710 (31%), Positives = 379/710 (53%), Gaps = 55/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++++A+KE +SL ++++ + YY P + D+ YD R + FP++ P Sbjct: 4 ITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG+++ KV H IP LS+ +++ +L+ F R+ QK + + + +E Sbjct: 61 DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRM----QKLVGHPVEYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE GK V A+ RG+G+ GEDV+A + I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+SK F LN E G +ANPRNAA+G LR+L+P R L+ F++ E Sbjct: 175 YMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEI 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q++ +QKM LGF N R+ T + ++ +E + R++L Y IDG+V K+D+ Sbjct: 235 T-SQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLG 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 294 IEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY+ + IR+GD V + +AG++IP++ ++++ +R D+ + Sbjct: 354 ASLHNPDYL-----------NEKGIRIGDTVKLHKAGDIIPEISEVVMAKRSADSVAYQI 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C ++V + A RC +C AQ E + HF SR A NI GLG + Sbjct: 403 PTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++D ++ AD++ L + + + F + S+ NL +++ + S+ Sbjct: 456 VKQLI-AKDLVHNV---ADLYHL------TADDLAQLDHFKEKSINNLLTALDNSKQNSV 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E I LGI HVGA+ AR + AQ+ N+ + D + + +G IA+ Sbjct: 506 ELLITGLGIDHVGAKAARLI----------AQKFKNLAKIMSLDVQEIASIDTIGMTIAE 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-----NKKLVFTGTLQKIQRHK 665 ++ ++ P ++ L+E ++ + +EIE +K +V TG L+ R + Sbjct: 556 SMTTYFAQPEAQKVIDE-LRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + + LGA V+ +S KTD +I G + GSK KAQ LGV ++ EE+ + Sbjct: 615 FTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAI 664 >gi|88803633|ref|ZP_01119157.1| putative DNA ligase [Polaribacter irgensii 23-P] gi|88780366|gb|EAR11547.1| putative DNA ligase [Polaribacter irgensii 23-P] Length = 665 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 230/709 (32%), Positives = 369/709 (52%), Gaps = 60/709 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L E++ H+ YY +I D ++D ++ + + P L D N P Sbjct: 3 AAQTIQLLRDELNTHNYNYYVLDNGMISDFDFDVKLKKLEQLEKENPLLF---DANSPTQ 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + + V H SL+ ++ EDL + R+ + +++ +T E K DG Sbjct: 60 RVGGAVTKNFNTVVHKNRMYSLDNSYSKEDLLDWEKRVEKVL---GSSALEYTCELKFDG 116 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I + YE G+FV A RGDG G++V+ I+ I +IP LS + E+RGE+ + + Sbjct: 117 ASINLTYENGQFVKAVTRGDGFQGDEVTNNIKTIRSIPLSLSADFVHNFEMRGEIILPLD 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F ++N E IA G + Y NPRN ASG L+ + ++ R L+ ++ + TSE K + Sbjct: 177 GFNSMNAERIANGEEEYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQI-VTSERKYKTHF 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E L+ R +GF V ++ + + VSY++E R LPY+ DG+V KV++ Q Sbjct: 236 ESLENARRVGFKVPKAIKLVKSIDAVFDFVSYWDEK---RHDLPYETDGIVIKVNDLQQQ 292 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG A++PRW I++KF Q +T L I Q+GRTG +TPVA L PV + G + A+ Sbjct: 293 EELGYTAKAPRWAIAYKFKATQVTTILNAISYQVGRTGAITPVANLNPVQLAGTTVKRAS 352 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L DIR D V V++ GE+IPK+ + R +++P + + Sbjct: 353 LHNADQIEKL-----------DIREKDTVFVEKGGEIIPKITAVDFTRRLENSEPTRYAT 401 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + +VR A H C C+ Q R++HF+SR A +IEGLG + +D Sbjct: 402 NCPECNTLLVRSEGD------AKHYCPNEFGCAPQITGRIQHFISRKAMDIEGLGGETVD 455 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 K I+ AD++ L Q ++ + S N+ I K + I E+ Sbjct: 456 LLRKEG----CIQNYADLYDLTVEQVIPLERM------AEKSAQNMIAGIEKSKEIPFEK 505 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F+LGIR VG +A+ LAKY+ S N ++ LI V +GD IAQ+I Sbjct: 506 VLFALGIRFVGETVAKKLAKYFKSIDNLMHA----------EFEVLISVDEIGDRIAQSI 555 Query: 613 VEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 ++F + NI + L EVS I +N + ++ + V +G ++ R++ + Sbjct: 556 IDFSSDEGNIQLINRLKSYGVQLEVSAEI---LENQTELLKGQVFVVSGVFHQLSRNELK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715 + + G VSA +S+KT+ I+ GDN G SKL KAQ LG++I++E+ + Sbjct: 613 KAIEDNGGKVSASISKKTNYIVAGDNMGPSKLTKAQDLGIEIISEQNLI 661 >gi|238855396|ref|ZP_04645707.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3] gi|260665363|ref|ZP_05866211.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US] gi|282932093|ref|ZP_06337550.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1] gi|238831994|gb|EEQ24320.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3] gi|260560867|gb|EEX26843.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US] gi|281303772|gb|EFA95917.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1] Length = 669 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 237/721 (32%), Positives = 392/721 (54%), Gaps = 68/721 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ + A++E+ +L ++++ + YY P + D+ YD +R + FP+L S+ Sbjct: 4 LNKKAAQEEIENLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQRLVELEKQFPELVTSDSI 63 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++GGE+ L KV H IP LS+ +++ ++LR+F RI QK + + +E Sbjct: 64 T---QRVGGEIKSDLGKVEHQIPMLSMGDVFSKDELREFDQRI----QKLVGGPVAYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRG 189 KIDG +++ Y GK V A+ RG+G GEDV+ ++ I IP+ L PE +EVRG Sbjct: 117 LKIDGLSLSLEYSDGKLVRASTRGNGRIGEDVTKNVQYISDIPKTL----PEALTMEVRG 172 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTS 247 E Y+ K FL LN E G +ANPRNAA+G LR+L+P R L+ F++ + Sbjct: 173 ECYMGKEAFLKLNTERDENGEAVFANPRNAAAGSLRQLDPQVTKKRNLSTFIYTWVNPPK 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 EI + Q++ +Q+M LGF N ++ G+ +Y +E S R +L Y IDG+V KVD Sbjct: 233 EITS--QHQAIQQMAKLGFHTNETGKRLANLDGVFAYIDEYTSKRDSLSYGIDGIVLKVD 290 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQKQLG + PRW I++KF ++ T + +I +GRTG++TP A ++PV + G Sbjct: 291 DLTLQKQLGNTVKVPRWEIAYKFPPEEQETIVHEIVWTVGRTGVVTPTAVMDPVELAGTT 350 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ A LHN D +K +D+R+GD V + +AG++IP++ ++++++R D++ Sbjct: 351 VSRAVLHNPDLLK-----------QKDVRIGDTVRLHKAGDIIPEISEVVLSKRPVDSKV 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P CP C +V G++ A RC AC AQ E + HF SR A +I GLG Sbjct: 400 YEIPDKCPSCGQALVH----LEGEV--ALRCINP-ACPAQIEEGIIHFASRPAMDIMGLG 452 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + + ++ AD++ L + + + FGD S+ NL +I+ R Sbjct: 453 PKIVRQLIQHN----LVKDIADLYHL------TADDLAELDHFGDKSINNLLTAIDNSRQ 502 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 S+E + LGI HVGA+ A L Q F + +N I+ + + L + +G+ Sbjct: 503 NSVELLLNGLGIDHVGAKAA------LLIVQRF-KNLNKIMQASVSE---LTAIDTIGET 552 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSE------IENKKLVFTGTL 658 IA++I ++ +V+ L++E+ S I ++VS+E +NK +V TG L Sbjct: 553 IAESITTYFAQ----ASVQKLVQELIDSGVNIDYLGEDVSNEEIADNFFKNKTVVLTGKL 608 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + LGA V+ +S+KTD +I G + GSKL KA+ L + ++ EE+ + + Sbjct: 609 AHFTRSEFTKKLESLGAKVTGSVSKKTDYVIYGTDAGSKLTKAESLQIALLTEEEAIEKI 668 Query: 719 Q 719 Q Sbjct: 669 Q 669 >gi|332361975|gb|EGJ39777.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK49] Length = 652 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 229/698 (32%), Positives = 369/698 (52%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F R+ +K+ + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRV-----RKEFPQVSYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ +++ + Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E+L K+ L F VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++L Sbjct: 229 EVLNKLADLDFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + + PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EALEVPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D+ + R + ++EN F + S LY +I + S ER +F Sbjct: 450 AQ-------NLVKDVAGIYRLTIENLLELEN---FKEKSANKLYTAIQASKKNSAERLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614 LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 500 GLGIRHVGSKASRILLEKFHDILRLSQASQEEIAA----------IDSLGTVIAQSLHTY 549 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F Q I E V+ + + + +V TG LQK+ R++A+E + LG Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ Sbjct: 610 ANVSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDED 647 >gi|58336856|ref|YP_193441.1| DNA ligase [Lactobacillus acidophilus NCFM] gi|227903415|ref|ZP_04021220.1| DNA ligase [Lactobacillus acidophilus ATCC 4796] gi|75357942|sp|Q5FLL4|DNLJ_LACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|58254173|gb|AAV42410.1| DNA ligase [Lactobacillus acidophilus NCFM] gi|227868891|gb|EEJ76312.1| DNA ligase [Lactobacillus acidophilus ATCC 4796] Length = 668 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 222/713 (31%), Positives = 384/713 (53%), Gaps = 61/713 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++++A+KE S L ++ D YY P + D+ YD R + FP++ P Sbjct: 4 ITLDEAKKEASLLRNQLDKWADAYYSKDAPEVEDNVYDQKYSRLLELEKQFPEIVT---P 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GGE++ KV H+IP LS+ +++ ++L+ F R+ QK + + + +E Sbjct: 61 DSITQRVGGEIDSDFTKVEHAIPMLSMGDVFSKDELKDFDQRM----QKLVGHPVEYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE GK + A+ RG+G+ GEDV+A R I IP+ L P IEVRGE Sbjct: 117 LKIDGLSLSLEYENGKLMRASTRGNGYVGEDVTANARYIADIPQTLPE--PLTIEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+ K F LN+E G +ANPRNAA+G LR+L+P R L+ F++ E Sbjct: 175 YMGKEAFAKLNEERENEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEDI 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q+E +++M+ LGF N ++ + I ++ +E + R +L Y IDG+V K+D+ + Sbjct: 235 T-SQHEAIKRMQELGFHTNETGQKLASLEEIFAFIDEYTARRDSLAYGIDGIVLKIDDLN 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +++ LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 294 IERSLGNTVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY+ +D+R+GD V + +AG++IP++ ++++++R D+ P+ Sbjct: 354 ASLHNPDYL-----------NEKDVRLGDTVKLHKAGDIIPEISEVVLSKRPVDSVPYVI 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C ++V + A RC +C AQ E + HF SR A NI GLG + Sbjct: 403 PENCPSCGHKLVHLQDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++ + AD++ L S + + F + S+ NL +I+ + S+ Sbjct: 456 VKQLIAND----LVHNVADLYHL------SAEDLAQLDHFKEKSINNLLTAIDNSKKNSV 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E I LGI HVGA+ AR +A+ ++N A+ I++ D L + +G IA+ Sbjct: 506 ELLITGLGIDHVGAKAARLIAQ---KFKNLAK----IMSLGVQD---LASIDTIGMTIAE 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS------IGRHEKN--VSSEIENKKLVFTGTLQKIQ 662 ++ ++ P + ++ ++ S +G E + ++K +V TG L+ Sbjct: 556 SMTTYFAQPE----AQEMIADLEKSGLNMEYLGEDEPEDIPDNPFKDKTVVLTGKLEHYT 611 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R + + + LGA V+ +S+KT+ +I G + GSK KA+QLG+ ++ EE+ + Sbjct: 612 RSEFTKRLQALGAKVTGSVSKKTNYVIYGQDAGSKYNKAEQLGIPLLTEEEAI 664 >gi|223932796|ref|ZP_03624793.1| DNA ligase, NAD-dependent [Streptococcus suis 89/1591] gi|223898505|gb|EEF64869.1| DNA ligase, NAD-dependent [Streptococcus suis 89/1591] Length = 652 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 220/682 (32%), Positives = 372/682 (54%), Gaps = 59/682 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YYQ +P + D+EYD L R + A P+L P+ P +++GG+M K +H P Sbjct: 19 YYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHRVGGKMLDGFEKYSHVYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YE G V A R Sbjct: 76 LFSLQDAFSREELEAFDQRV-----RKEFPQATYICELKIDGLSISLTYEAGNLVVGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + +P L +PE ++ VRGE Y+ K F +N + G Sbjct: 131 GDGSVGENITENLKRVADVP----LTLPEAVDITVRGECYMPKASFDRVNKQRQEAGEAE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ SE A Q ++L+K+ LGF N+ Sbjct: 187 FANPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSE--ATSQSQVLEKLDALGFVTNHE 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A + + ++ R LPY+IDG+V KV++ ++Q++LG ++PRW +++KF Sbjct: 245 YCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +L +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR+GD V+V +AG++IP V+ +V++ + + PS CP CQS DL + Sbjct: 354 EKDIRIGDTVIVYKAGDIIPAVLK-VVDKYRKEQEIMPIPSHCPSCQS----DLQHYEDE 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 + A RC + C +Q + +L+HF SRDA NI GLG ++ F A + ADI+ Sbjct: 409 V--ALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLFG----AGLVHDVADIY 461 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L + + + GF + S LY +I ++ S E +F LGIRHVG++ ++ L Sbjct: 462 KL------TVDDLLTLEGFKEKSADKLYQAIQTSKSNSAECLLFGLGIRHVGSKASKILV 515 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + + + +A + + ++L+ +G +IA+++ F+ + + A LKE Sbjct: 516 EKFGDLET--------LAFADQEAIALLEG--LGQVIAKSLTTFFAS-EGAQQLLAELKE 564 Query: 632 VSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 ++ + V ++ + +V TG L++++R++A+ + LGA V+ +S+KT++++ Sbjct: 565 AKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGANVAGSVSKKTNLVV 624 Query: 690 VGDNPGSKLEKAQQLGVKIMNE 711 G + GSKL KAQ+LG++I +E Sbjct: 625 AGTDAGSKLTKAQELGIEIKDE 646 >gi|119487266|ref|ZP_01621017.1| DNA ligase [Lyngbya sp. PCC 8106] gi|119455821|gb|EAW36956.1| DNA ligase [Lyngbya sp. PCC 8106] Length = 685 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 227/703 (32%), Positives = 369/703 (52%), Gaps = 56/703 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + L Q++ YY PII D+ YD L R + +P L P+ P + Sbjct: 9 QQRVQKLSQQLHLASYAYYVLDAPIIEDAIYDQLYRELQQLETDYPQLI---TPDSPTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD----NSIFFTLEPK 133 +G + V H+IP SLE +N E+L+ + R + + +D + + E K Sbjct: 66 VGEKPATQFTSVRHNIPLYSLENAFNTEELKAWDGRWKKVLKTEDKEINYSEPLYICELK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 IDG+ + + YE G V RGDG +GE+++ ++ I +IP L L + P I+EVRGE + Sbjct: 126 IDGSALALTYENGILVRGTTRGDGVTGEEITQNVKTIRSIPLRLKLESPPSIVEVRGEAF 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG-KTSEIF 250 +S N F +N E +ANPRNAA+G LR+L+ + +R L+FF + + + EI Sbjct: 186 LSLNIFAKINQERQQKDESLFANPRNAAAGTLRQLDSRIVRSRQLDFFAYTVHLEGEEIN 245 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q++ L+ ++ +GF VN + ++ + +Y+ + S R L Y DG+V K++ S Sbjct: 246 LKTQWDCLELLQEMGFKVNPNRQLCHSLTEVQNYFEDWDSRRQNLSYMTDGVVVKINPLS 305 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG + PRW I+ K+ ++A T+LL + +Q+GRTG LTPVA LEP+ + G + Sbjct: 306 LQEQLGFTQKFPRWAIALKYPAEEAPTKLLAVTVQVGRTGALTPVAELEPLQLAGTTVQR 365 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L D+ +GD V+V++AGE+IP+VV + R +AQPF Sbjct: 366 ATLHNSDRIAEL-----------DLHIGDTVIVRKAGEIIPEVVRNLPELRPTNAQPFQM 414 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C VV+ P+T A RC +C A L H+ SRDA +I G+G++ Sbjct: 415 PTHCPECGQAVVK---PQTE---AVTRCI-NTSCPAILRGSLIHWCSRDAVDINGVGEKL 467 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + + I AD++ L + K+ + G+ S T + +++ + + Sbjct: 468 VQQLVERK----LISSVADLYEL------TVEKLTQLERIGEKSATKIVNAVTESKTQPW 517 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R ++ LGIRHVG+ A L + +L+ + A I V +G IA Sbjct: 518 ARVLYGLGIRHVGSVNAELLTQKFLTVEQLADSTPADIEG----------VYGIGTEIAF 567 Query: 611 AIVEFYQNPRNICAVEALLK-------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 ++ E+++ P N +E L + + SP +K + K V TGTL ++R Sbjct: 568 SVEEWFKVPANQALIERLKQQGLNLASQPSPESSLSQKQ-DLNLSGKTFVLTGTLPNLKR 626 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +A++ + G V+ +S KTD ++VG++ GSKL+KAQ+L + Sbjct: 627 DEAKKLIQNAGGKVTGSVSSKTDYVVVGEDAGSKLKKAQELEI 669 >gi|154148661|ref|YP_001406577.1| NAD-dependent DNA ligase LigA [Campylobacter hominis ATCC BAA-381] gi|166215571|sp|A7I236|DNLJ_CAMHC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|153804670|gb|ABS51677.1| DNA ligase, NAD-dependent [Campylobacter hominis ATCC BAA-381] Length = 645 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 233/693 (33%), Positives = 377/693 (54%), Gaps = 74/693 (10%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P+ D EYD L ++ + + FPDL S P N++G ++ K+ H Sbjct: 19 AYYTQDNPLATDIEYDVLYKKVETFENEFPDLKVSYSPT---NRVGDAVSEGFEKINHKA 75 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 S+E I++ +L ++ R + + F +EPK DG + + YE G + A Sbjct: 76 KMWSMEDIFDDNELLAWLER-------GEKAGLEFFVEPKFDGASLNLTYENGVLISAGT 128 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RG+G +GE+V+ ++ I +IP L ++ E IE+RGEV I+K+DF ALNDE G + Sbjct: 129 RGNGETGENVTQNVKVINSIP--LQIDYKEKIEIRGEVVIAKSDFDALNDERANSGENLF 186 Query: 214 ANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L+ + +R+L FF +G+ S F K E+++ +R LGF ++ V Sbjct: 187 ANPRNAAAGSLRQLDSAVVKSRHLKFFPWDVGENSLNFKK-HSEIMEFVRNLGFLKDDFV 245 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 R + + Y ++ +R +DG+V +++E + + +G + PR+M+++KF Sbjct: 246 RVCASLTDLRKAYVDLHEMRERKDILMDGMVIRINELTKCENMGYTIKFPRFMVAYKFPP 305 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + +T+L+DI++Q+GRTG++TPV LEPVNI GA + NATLHN D I L +M+ Sbjct: 306 VEKATKLIDINLQVGRTGVITPVGVLEPVNIDGATVRNATLHNFDEIARLG----LMK-- 359 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR-VVRDLNPKTGK 451 GD V + R+G+VIPK+ + R+ P P FCP+C SR +V D+ Sbjct: 360 -----GDIVSIIRSGDVIPKITGVFGARRNGSETPIKRPEFCPVCGSRLLVEDI------ 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 RC L C A+ + L +F S+ NI+GLG+ ++ F+ I +DI+ Sbjct: 409 ---FIRCQ-NLTCKARIVNSLIYFCSKKCMNIDGLGEAIINTLFEKG----KIINISDIY 460 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ +E + GF D ++NL SI R L RFI +LGI H+G AR +A Sbjct: 461 TLK------ADDLEGLEGFKDKKISNLLASIENSRISPLYRFITALGIEHIGEVAARKIA 514 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLS-----LIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 + + ++WL+ ++++ G+ +A++ V F + R +E Sbjct: 515 EIF-----------------GENWLNASFDEILKIDGFGEAMAKSFVGFCEINRE--KIE 555 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKK-LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 LL + S + E +S + KK +V TGTL I R + +E + ++GA V+ +S+KT Sbjct: 556 NLLSFLHLSAQKTE--ISQNVFTKKTVVITGTLS-ISRDEMKEKLIKMGANVTNSVSKKT 612 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 D ++ G + GSKLEKA+ LGVK ++E++F +L Sbjct: 613 DFVLFGKDAGSKLEKAKMLGVKAISEDEFKEML 645 >gi|34499358|ref|NP_903573.1| DNA ligase [Chromobacterium violaceum ATCC 12472] gi|81654398|sp|Q7NR81|DNLJ_CHRVO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|34105208|gb|AAQ61564.1| DNA ligase [Chromobacterium violaceum ATCC 12472] Length = 821 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 229/663 (34%), Positives = 354/663 (53%), Gaps = 94/663 (14%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + L + ++ + YY P + D+EYD L R A+ A P+LA S+ P ++GG Sbjct: 27 AELRELLNRYGHEYYVLDAPTVPDAEYDRLFRELQALEEAHPELAVSDSPT---RRVGGA 83 Query: 82 MNLSLFKVTHSIPTLSLEKIWN-------IEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 V H++P LSL ++ E + I R + D + + EPK Sbjct: 84 PLDEFVSVVHAVPMLSLSNAFSDMQLTDPAERHSELIQFDERVRKGLDAAEVEYATEPKF 143 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193 DG I++ YE G AA RGDG +GE V+ +R I IP L N P ++EVRGEV + Sbjct: 144 DGLAISLLYENGVLTRAATRGDGVAGEQVTENVRTIRAIPLKLDGANPPALLEVRGEVLM 203 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT--SEI 249 K DF LN + IA G K +ANPRNAA+G LR+L+ + IT R L+FF + + + ++ Sbjct: 204 LKRDFERLNADQIARGDKTFANPRNAAAGSLRQLD-SRITAQRRLSFFAYSIAQVGGADW 262 Query: 250 FAKGQYEMLQKMRCLGFPV-NNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 A EM ++ LGFPV + +R + G+ YY + + R+ LP++IDG+VYKV+ Sbjct: 263 PATHAGEMAW-LKTLGFPVVMDSLRPVVSGAAGLAGYYEAVLTARAGLPFEIDGVVYKVN 321 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q+ LG +R+PRW I+HKF ++A T + I+ Q+GRTG +TPVARL+PV +GG Sbjct: 322 RRDQQEALGFVSRAPRWAIAHKFPAEEALTCVEAIEEQVGRTGAITPVARLKPVFVGGVT 381 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER------ 421 +TNATLHNED ++ +D+RVGD V+V+RAG+VIP+VV +++ +R Sbjct: 382 VTNATLHNEDEVR-----------RKDVRVGDTVVVRRAGDVIPEVVSVVLAQRPMQPAE 430 Query: 422 ---------HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472 P + P+ CP+C S VVR+ G+ +A RC+GGL+C AQ+ + + Sbjct: 431 GGDLFSAGEEPRYPAYRLPTACPVCGSHVVRE----EGEAIA--RCSGGLSCRAQRSQAI 484 Query: 473 KHFVSRDAFNIEGLGKQQLD-----FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527 +HF R +I+GLG++ +D + + + +++ D+ ++RR Sbjct: 485 QHFAGRRMMDIDGLGERYIDKLVEYGYVQGVADLYRLKL-EDLLEMKRRADEDEGVTPET 543 Query: 528 LGFGDVS---VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + G V+ NL ++I+ R L R +F+LGIRHVG A++LA Sbjct: 544 VKAGKVASKWAENLIEAIDASRAPPLARLLFALGIRHVGESTAKTLA------------- 590 Query: 585 NNIIAHNNDDWL---SLIR---------VPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 DWL +LIR +P +G ++A ++ +F+ N A++ALL EV Sbjct: 591 ---------DWLGTMALIRRCPAALFAALPDIGGVVADSLADFFAEDNNEKALDALLAEV 641 Query: 633 SPS 635 P+ Sbjct: 642 KPA 644 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K LV TGTL + R +A+ + G VS +S+KT ++ G+ G KL KAQ+LGV I Sbjct: 749 GKTLVLTGTLPTLSRDQAKALIEAAGGKVSGSVSKKTHYVVAGEEAGGKLAKAQELGVAI 808 Query: 709 MNEEQFLFLL 718 ++E LL Sbjct: 809 LDEAGLQALL 818 >gi|118470314|ref|YP_886705.1| NAD-dependent DNA ligase LigA [Mycobacterium smegmatis str. MC2 155] gi|166216211|sp|A0QUW7|DNLJ_MYCS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118171601|gb|ABK72497.1| DNA ligase, NAD-dependent [Mycobacterium smegmatis str. MC2 155] Length = 701 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 232/717 (32%), Positives = 364/717 (50%), Gaps = 59/717 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ L E+ H YY PII D+E+D L R A+ A P+L P+ P Sbjct: 22 RRRWQELADEVREHQFRYYVKDAPIISDAEFDKLLRELQALEDAHPEL---RTPDSPTQL 78 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +GG + F H LSL+ +++ ++L + RI + ++ F E KIDG Sbjct: 79 VGGAGFATEFAPAEHLERMLSLDNVFDSDELTAWAARI----SSETGDAAHFLCELKIDG 134 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVY 192 +++ Y G+ A RGDG +GEDV+ R I IP L+ +P ++EVRGEV+ Sbjct: 135 VALSLVYRDGRLERGATRGDGRTGEDVTLNARTIDDIPERLTPSDEFPVPAVLEVRGEVF 194 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN ++A G+ P+ANPRN+A+G LR+ NP R L HG+G T Sbjct: 195 FRVADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGYTEGFTP 254 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ + + G PV+ + +T + ++Y+ E R + ++IDG+V KVDE Sbjct: 255 ASLHDAYRALGAWGLPVSEHTTKVSTVAEVAERIAYWGEH---RHDVEHEIDGVVVKVDE 311 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG +R+PRW +++K+ ++A+T+LLDI + +GRTG +TP A +EPV + G+ + Sbjct: 312 VALQRRLGATSRAPRWAVAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVKVAGSTV 371 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN +K R G + +GD V++++AG+VIP+V+ +V+ R + F Sbjct: 372 GLATLHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGTEREF 420 Query: 429 SFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 FP+ CP C + +L P K G A RC +C AQ ERL H R AF+IEGLG Sbjct: 421 EFPTHCPECGT----ELAPAKEGD--ADIRCPNSRSCPAQLRERLFHLAGRGAFDIEGLG 474 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQR----RQQTSTTKIENILGFGDVSVTNLYDSIN 543 + ++ I D+FTL R + TTK + G + NL Sbjct: 475 YEAATALLAAQ----VIPDEGDLFTLTADDLLRTELFTTKKGELSANGKRLLANL----T 526 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + L R + +L IRHVG AR+LA + S + +A Sbjct: 527 KAKEQPLWRVLVALSIRHVGPTAARALATEFGSLEAIEAASEEELAAVEG---------- 576 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 VG IA A+ +++ + V+ + ++ +E +V TG+L R Sbjct: 577 VGPTIAAAVKDWFTVDWHRAIVDKWRAAGVRMADERDASIERTLEGLSIVVTGSLAGFSR 636 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A+E + G + +S+KT ++ GD PGSK +KA +LGV +++E+ F LL+Q Sbjct: 637 DQAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAVELGVPVLDEDGFRRLLEQ 693 >gi|33866919|ref|NP_898478.1| NAD-dependent DNA ligase LigA [Synechococcus sp. WH 8102] gi|81573701|sp|Q7U3P1|DNLJ_SYNPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33639520|emb|CAE08904.1| Putative DNA ligase [Synechococcus sp. WH 8102] Length = 679 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 232/720 (32%), Positives = 370/720 (51%), Gaps = 63/720 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q EL SL ++ YY P++ D+ YD L R + A P L ++ P Sbjct: 5 QQRAAELRSLLNRAAH---AYYVLDAPVMEDTLYDRLYRELQQLEQADPSLLSADSPT-- 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G V H IP SL+ ++ +L+ + R+ + + DD+ + E KI Sbjct: 60 -QRVGKAPATGFHSVEHRIPLQSLDNAFDHGELKAWHERLLKVLDRADDSPLPLVGELKI 118 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + Y G AA RGDG SGE+++A +R I +IP L ++ PE +EVRGE +I Sbjct: 119 DGNALALSYRHGVLERAATRGDGSSGEEITANVRTISSIPLRLQIDDPPEWVEVRGEAFI 178 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF-- 250 + F A+N+E A G +ANPRNA +G LR+L+P + R L+FF + L S+ Sbjct: 179 PDDTFAAINNERAAHGDALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPSDHSNS 238 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q+++L + GF VN + +GI + + + R L Y DG+V K+++ Sbjct: 239 PECQWDVLAWLEQAGFRVNPNRELCDGLNGIERFCDRWEQQRHQLTYATDGVVVKLNDLR 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ + G ++PRW I+ K+ ++A ++LL + +Q+GRTG +TPVA EPV + G ++ Sbjct: 299 LQDEAGTTQKAPRWAIALKYPAEEAPSKLLKLAVQVGRTGAVTPVAEFEPVALAGTSVSR 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L D+ +GD V+V++AGE+IP+VV ++ R A P Sbjct: 359 ATLHNADRIAEL-----------DLHLGDTVVVRKAGEIIPEVVRVLPELRPTGAVPLEL 407 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +VRD + AA RC +C A L+H+VS+ A +++GLG + Sbjct: 408 PDHCPECGSNLVRDDSE------AATRCINS-SCPAILRGGLRHWVSKGALDVDGLGNKL 460 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + +R AD++ L S ++ G+ S NL ++ + + Sbjct: 461 IQQLVER----GLVRSIADLYRLDAALLASLERV------GEKSAANLVAALEQSKQQPW 510 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R ++ LGIRH+G A++LA Y + + A E +I A + +G I+ Sbjct: 511 HRQLYGLGIRHIGEVNAKALAAAYPNSASLAAAEPESIAALHG-----------IGPEIS 559 Query: 610 QAIVEFYQNPRNI----------CAVEALLKEVSP-SIGRHEKNVSSEIENKKLVFTGTL 658 ++ +++ NP N ++EA E++ S G E N S + K LV TGTL Sbjct: 560 SSLQQWHANPPNQRLLEDLRAVGLSLEANTSELNANSTG--EGNSSGALLGKTLVLTGTL 617 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R A+ + G VS +S+KTD ++ G+ GSKL KA+ LGV+I+ E + LL Sbjct: 618 PNLSRSDAKTLIEGAGGKVSGSVSKKTDYLVAGEAAGSKLSKAESLGVEILTEAELQKLL 677 >gi|284053772|ref|ZP_06383982.1| NAD-dependent DNA ligase LigA [Arthrospira platensis str. Paraca] Length = 683 Score = 357 bits (915), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 226/716 (31%), Positives = 364/716 (50%), Gaps = 52/716 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I Q +L Q SY YY PI+ D YD L R + + +P+L P+ Sbjct: 12 ISQKLAQLRLTVQRASY---AYYVLDAPIMEDGVYDRLYRELQELENQYPELI---SPDS 65 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + VTH+IP SLE +N+ +L+ + + RF + E K Sbjct: 66 PTQRVGEKPAAQFQSVTHNIPLYSLENAFNMAELQAWDEKWRRFLGDSLPQDPKYICELK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 IDG+ I + Y G V RGDG +GED++ ++ I +IP L L N P ++EVRGE + Sbjct: 126 IDGSAIALTYHNGILVRGVTRGDGVTGEDITQNVKTIRSIPLKLHLDNPPPVVEVRGEAF 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 +S + F+ +N E G +ANPRNAA+G LR+L+P + R L+FF + L S Sbjct: 186 LSNHIFVQINQERQQTGEPLFANPRNAAAGTLRQLDPRIVADRRLDFFAYTLHLDSPNL- 244 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++ L+ ++ +GF VN + + + Y++ + R LPY DG+V K++ SL Sbjct: 245 HDHWDCLEFLQKMGFKVNPNRQLCQSLLEVQQYFDAWDTQRQQLPYMTDGVVVKLNSLSL 304 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 QKQLGE + PRW I+ K+ ++ T+++ + Q+GRTG LTPVA LEP+ + G + A Sbjct: 305 QKQLGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTVKRA 364 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+D + L D+ +GD V+V++AGE+IP+VV ++ + R A+ + P Sbjct: 365 TLHNQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLVTMP 413 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C V++ P A RC +C A + H+ R A +I G+G++ + Sbjct: 414 THCPECGETVIK--TPAE----AVTRCINS-SCPAIVRGSIIHWCQRPALDINGIGEKLV 466 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 ++ +R AD++ L Q ++ G+ S + +I + Sbjct: 467 HQLVDAQ----LVRSVADLYDLNMDQLLELDRM------GEKSAQKILAAIATSKQQPWH 516 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++ LGIRHVG A LA+ + S Q+ A + I V +G IA + Sbjct: 517 RVLYGLGIRHVGKANADLLAQNFPSCQSLAAASSAQIEG----------VYGIGAEIATS 566 Query: 612 IVEFYQNPRNICAVEAL----LKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + +++QNP NI + L L+ S PS + K V TGTL + R +A Sbjct: 567 VYQWFQNPANISLCDRLQQAGLQLTSVPSTAPKSTPQAQPFAGKTFVLTGTLPTLSRDQA 626 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + G V+ +++K D +++G+ PGSKL+KAQ L + ++E FL +++ N Sbjct: 627 KSMIENAGGKVTNSVTKKVDYLLLGEKPGSKLKKAQDLAIANLSESDFLAMIKSAN 682 >gi|13235502|emb|CAC33764.1| DNA ligase [Rickettsia typhi] Length = 492 Score = 357 bits (915), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 195/513 (38%), Positives = 316/513 (61%), Gaps = 33/513 (6%) Query: 213 YANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G +R+L+ R L +F++ G T + A Q ++L K++ L F VN Sbjct: 1 FANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTEKNLASTQEQLLAKLKALSFSVNEI 60 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + A++ I ++Y +K+ R LPY+IDG+VYK++ F++Q ++G ARSPR+ I+HKF Sbjct: 61 SKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLNNFAMQNRMGFIARSPRFAIAHKFP 120 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 T+LL I +Q+GRTG+LTPVA L+P+ IGG +++ ATLHN I Sbjct: 121 AIIGQTKLLSITVQVGRTGMLTPVAELDPLEIGGVVVSRATLHNFQDI-----------A 169 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR---VVRDLNPK 448 +D+R+ D V ++RAG+VIP++ + +++R D F P FCP C S+ V D+ Sbjct: 170 RKDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVKFDTPVFCPSCNSKLRYVSEDI--- 226 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 RC GL C AQ ER+ HFVS++A +I GLG++Q+ F I P Sbjct: 227 ------IIRCDNGLNCPAQNYERICHFVSKNAMDIAGLGRKQVAFLIDKR----LISNPL 276 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 DIF L+++ +T+ ++EN+ G+G SV NL+ +I K + ISL+RFI++LGIRH+G + A+ Sbjct: 277 DIFFLKKKNETNLIRLENMDGWGKKSVANLWQNIEKSQKISLQRFIYALGIRHIGEQNAK 336 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 LA+ ++SY NF ++ + +++D + L + +GD + I++F+ NI ++ L Sbjct: 337 LLAREFVSYNNFIAQMELLSKNDSDVYQKLNDLEGIGDKMLVDIIDFFYVKENIQLIKKL 396 Query: 629 --LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 + + E+N+ + K LVFTG+L+ I R +A+E +LGA V++ +S TD Sbjct: 397 GAVLNIEDYKETREQNI---LTGKILVFTGSLKTISRVEAKEIAEKLGAKVASSVSSNTD 453 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++IVG N GSKL+KA++L +KI++E ++L ++ Sbjct: 454 LLIVGVNGGSKLKKAKELNIKIIDEAEWLAFIK 486 >gi|289644234|ref|ZP_06476323.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata] gi|289505957|gb|EFD26967.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata] Length = 713 Score = 357 bits (915), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 224/689 (32%), Positives = 353/689 (51%), Gaps = 48/689 (6%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L + +P L P+ P K+ G ++ V H Sbjct: 46 YYVLDSPTVSDAEYDQLMAELTQLETRYPGL---RTPDSPTQKVAGTISTLFTPVEHLER 102 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ ++ + + R+ R + + D + E KIDG + + YE G AA R Sbjct: 103 LLSLDNVFTEVEFEAWAARVTR--EAEVDA---WLCELKIDGLAVDLVYEDGYLARAATR 157 Query: 155 GDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 GDG +GEDV+ IR + +P R+ ++PE++EVRGEV+ F LN ++A G KP+ Sbjct: 158 GDGRTGEDVTPNIRTLAAVPGRLRGGSVPELLEVRGEVFFPTAAFTELNATLVAAGDKPF 217 Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+ +P R L+ +HGLG Q + Q+M LG PV+ Sbjct: 218 ANPRNAAAGSLRQKDPRVTAGRPLSMIMHGLGAHRGFDVTSQSDAYQRMAELGLPVSRHH 277 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 + + ++ R + ++IDG+V KVD F LQ++LG ++SPRW +++K+ Sbjct: 278 EVLASVAEVEAFVRRWGEHRHDVEHEIDGVVVKVDAFGLQRRLGATSKSPRWAVAYKYPP 337 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 ++ +TRLL I++ +GRTG +TP RLEPV + G+ + ATLHN D +V R G Sbjct: 338 EEVTTRLLGIEVNVGRTGRVTPFGRLEPVRVAGSTVALATLHNAD---------QVERKG 388 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 + +GD V++++AG+VIP++V +V+ R + F P+ CP C + +VR P+ Sbjct: 389 --VLIGDTVVLRKAGDVIPEIVGPVVDLRDGSERAFVMPTHCPECGTELVR---PEGEVD 443 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 V RC ++C AQ E L HF SR A +I+G G + + A +R D+F Sbjct: 444 V---RCPNTVSCPAQLRESLFHFASRGALDIDGFGYETATALLE----AGRVRDVGDVFH 496 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L + + GF + + + R L R + L IRHVG AR+LA+ Sbjct: 497 L------TAESFAELRGFAKKKIDQILRGVEAARQQPLWRLLVGLSIRHVGPSAARALAR 550 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 S ++ I A + + +L V VG IA ++V+++ +PR+ +E + Sbjct: 551 EMRS-------VDAIAAASTE---TLAAVDGVGPTIAASVVDWFADPRHQDILERIRSGG 600 Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 + + + +V TGTL R A E V G V+A +S+KT ++VG Sbjct: 601 ARFADAGADDGPGPLTGVTVVITGTLAGWSRDSATEAVQARGGKVTASVSKKTAFVVVGA 660 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 +PG SK +KA+ + I++E F LL+Q Sbjct: 661 DPGASKYDKARAWKLSILDEAGFAVLLEQ 689 >gi|13235515|emb|CAC33719.1| DNA ligase [Rickettsia rickettsii] Length = 488 Score = 356 bits (914), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 197/508 (38%), Positives = 312/508 (61%), Gaps = 23/508 (4%) Query: 213 YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L +FV+ G T + A Q ++L K++ GF +N Sbjct: 1 FANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNLASSQDQLLTKLKECGFNINEI 60 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + A++ I ++Y +K+ R LPY+IDG+VYK+++F+LQ ++G AR+PR+ +HKF Sbjct: 61 SKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARNPRFATAHKFP 120 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 T+LL I +Q+GRTG LTPVA LEP+ IGG ++ ATLHN I Sbjct: 121 AIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEI-----------A 169 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +D+R+ D V ++RAG+VIPK++ + ++R D + F P FC C S++ P+ Sbjct: 170 RKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTETFDTPLFCLSCNSKL--HYTPEDII 227 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 + RC GL C AQ ER++HFVS++A +IEGLG++Q++F D I P DIF Sbjct: 228 I----RCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLI---DKGL-ISNPLDIF 279 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L+ + +S K+EN+ G+G SV NL+ +I K +N+SL RFI++LGIRH+G + A+ LA Sbjct: 280 FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRHIGEQNAKLLA 339 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + + SY NF ++ + + D + L + +GD I I++F+ NI ++ L E Sbjct: 340 REFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKK-LGE 398 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + E S + +K +VFTG+L I R +A+ +LGA V+ +S TD+++ G Sbjct: 399 ILNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAKATAEKLGAKVAVGVSSNTDLVVAG 458 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + GSKL+KA++L +KI++EE++L L++ Sbjct: 459 VDAGSKLKKAKELNIKIIDEEEWLTLIK 486 >gi|327489925|gb|EGF21714.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1058] Length = 652 Score = 356 bits (914), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 230/698 (32%), Positives = 367/698 (52%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F R+ +K+ + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRV-----RKEFPQASYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ + S A Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQADSQE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 +L K+ L F VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++L Sbjct: 229 AVLNKLADLDFSVNPTHILADSIEAVWKFIEKIAQERDSLPYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + +P PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNINGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D+ + R + ++EN F + S LY +I + S E +F Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAECLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614 LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIA----------AIDSLGTVIAQSLHTY 549 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F Q I E V+ + + + +V TG LQK+ R++A+E + LG Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A VS +S+KTD+++ G++ GSKL KAQ+LG++I +E+ Sbjct: 610 ANVSGSVSKKTDLVVAGEDAGSKLAKAQELGIEIRDED 647 >gi|313673736|ref|YP_004051847.1| DNA ligase, nad-dependent [Calditerrivibrio nitroreducens DSM 19672] gi|312940492|gb|ADR19684.1| DNA ligase, NAD-dependent [Calditerrivibrio nitroreducens DSM 19672] Length = 655 Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 230/700 (32%), Positives = 387/700 (55%), Gaps = 69/700 (9%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 + + L +E+++H YY + P I D++YD L ++ I P+ P+ P Sbjct: 4 TKTDYDRLVKELNHHCIRYYLLNDPAISDAKYDNLYKQLRKIEEEHPEWI---SPDSPTQ 60 Query: 77 KIGGEMNLSLFKVT------HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 ++G FKVT H SL+ I++ +L F +++Y+ + I + + Sbjct: 61 RVG-------FKVTSGKTIKHLYKMFSLDNIYSEGELNDFFSKVYKVVG----SDIDYVV 109 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 EPKIDG ++I YE G YAA RGDG GED++ I+ I +P +S++ I +RGE Sbjct: 110 EPKIDGAAVSIVYEDGVLSYAASRGDGVEGEDITHNIKTIRELP--VSISEKNRIVLRGE 167 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249 VY+SK F +N E G +ANPRNAA+G L+ L+P R L+ F++ + + Sbjct: 168 VYLSKEQFNKINRERKNAGESLFANPRNAAAGTLKILDPAITARRGLSIFIYSIEEGRRY 227 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ L+ ++ +GFP+N + + I Y ++++S+R LPYDIDG V KV+++ Sbjct: 228 --DNHFDDLKWLKSIGFPINEHIF-VGKYKDIKGYIDKIESLRKNLPYDIDGAVVKVNKY 284 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++ LGE + P+W I++K+ +Q +T L D+ Q+GRTGI+TPVA L+ VNI G+ ++ Sbjct: 285 EVRSILGETIKYPKWAIAYKYEAEQVTTILKDVIFQVGRTGIVTPVAVLDTVNISGSNVS 344 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHNED IK L +++GD V V+++GE+IPKV+ ++ R + Sbjct: 345 RASLHNEDEIKRL-----------GVKIGDTVFVEKSGEIIPKVIKVVPEFRTGGEKEII 393 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FPS CP C ++ K+ A +C L C + + H+ SRDA +I GLG++ Sbjct: 394 FPSNCPSCGDKLF--------KIDAYWKCL-NLDCPDRVKGSITHYASRDAMDIRGLGEK 444 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ F+ D IP DI+ L+ + N+ GFG++S NL SI + + Sbjct: 445 NVERFY---DLGLLRSIP-DIYRLE------YDDLVNLEGFGELSADNLLKSIEESKRRE 494 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R I++LGI VG ++A++LA ++ S I++I+A + DD L+ + +GD + Sbjct: 495 FYRLIYALGIDGVGIKMAQTLALHFKS-------IDSIMAASIDD---LMDIYGIGDEVG 544 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++I EF++ RNI ++ L+ V ++ + E + ++ + TGTL K ++ Sbjct: 545 RSIFEFFRERRNIEMLQ-FLRRVGVNMVQKEV-MGDKLSGVTFLITGTLSKPRKFYEDII 602 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 + G ++S + S+ + +IVG+NPGSKLEKA+ LGV+++ Sbjct: 603 IKNGGKILSGV-SKNLNFLIVGENPGSKLEKAKSLGVEVI 641 >gi|239917127|ref|YP_002956685.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665] gi|239838334|gb|ACS30131.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665] Length = 797 Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 245/789 (31%), Positives = 373/789 (47%), Gaps = 101/789 (12%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E L + + YYQ P I D+EYDAL RR + + P+L ++ P + Sbjct: 22 REEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELVSNDSPT---QE 78 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDG 136 +GGE++ + V H SLE ++++E+L + R + Q + + + +E KIDG Sbjct: 79 VGGEVSEAFAPVRHGARMYSLEDVFSVEELEVWFRRAAQALTQVRPGVAPRWLVEVKIDG 138 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISK 195 + +RY G+ V AA RGDG +GEDV+A +R I IP LS P EVRGEV++S Sbjct: 139 LAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAEFEVRGEVFMSS 198 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN G+ P+ANPRNAA+G LR+ +P R L FVHG+G + Q Sbjct: 199 AAFAELNARRAEEGQPPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGIGSVEAFGLESQ 258 Query: 255 YEMLQKMRCLGFPVNNGVRQAN-----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +E + G PV+ R+ +V+ E R L ++IDG+V K D F Sbjct: 259 HEAYDALASWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHEIDGIVLKADAF 318 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+ LG +R PRW ++K+ ++ T L DI + +GRTG +TP A LEPV + G+ ++ Sbjct: 319 ADQRYLGHTSRVPRWAAAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVLEPVTVAGSTVS 378 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP------ 423 ATLHN+D +K + + +GD V+V++AG+VIP+VV ++ R Sbjct: 379 LATLHNQDVVK-----------AKGVLIGDTVVVRKAGDVIPEVVGPVLPLREKAIEAGR 427 Query: 424 DAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + + F P+ CP C + L P K G + RC +C AQ R++H SR AF+ Sbjct: 428 ELREFVMPAHCPSCGT----PLAPAKEGDV--DLRCPNARSCPAQLAGRVEHLASRGAFD 481 Query: 483 IEGLGKQQLDFFFK--SEDPA-----------FSIRIPADIFTLQR---------RQQTS 520 +E LG++ + + EDPA I A IF L R + Sbjct: 482 VEALGEEAARWLVQGPGEDPAEHEGHVRPEGPGPITAEAQIFDLASGTPEAITGPRGEDG 541 Query: 521 TTKIENILGFGDV--------------------------------------SVTNLYDSI 542 T ++ LG V + L+D + Sbjct: 542 LTDLQRSLGAVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPTANTLRLFDEL 601 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K ++ L R + +L IRHVG ARSLA + S A D L + Sbjct: 602 EKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMTALR------AAAEAGDRDRLAEID 655 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG IIA A++E++ + V+ +++ +E +V TG+L+ Sbjct: 656 GVGPIIADALIEWFAEDWHREIVDRWTAAGVAMEDEQDESTPRTLEGLTVVVTGSLEGFS 715 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R A+E + G S +S+KTD ++ G+ GSKL+KAQ LGV +++E +F LL Sbjct: 716 RDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEAEFTALLAGGP 775 Query: 723 TTLRIHDDD 731 +R D D Sbjct: 776 DAVRPADTD 784 >gi|322385709|ref|ZP_08059353.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100] gi|321270447|gb|EFX53363.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100] Length = 652 Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 229/699 (32%), Positives = 377/699 (53%), Gaps = 57/699 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELVELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F RI +K+ + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELMAFDQRI-----RKEFPQVSYICELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ + S A Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQAGSQE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E+L K+ L F VN A++ G+ + ++ R +L Y+IDG+V KV++ ++Q++L Sbjct: 229 EVLNKLASLDFSVNPIHFLADSIDGVWEFIEKIAQERDSLSYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + + PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EALEIPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKVF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 ++ A I+ L S + + GF + S LY++I + S E+ +F Sbjct: 450 DKN----LVKDVAGIYRL------SVEDLLTLDGFKEKSANKLYNAIQASKENSAEKLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIRHVG++ +R L + + +Q I+ + +G +IAQ++ + Sbjct: 500 GLGIRHVGSKASRILMEKFHDMIKLSQASQEEISS----------IDSLGTVIAQSLHSY 549 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQL 673 ++ + + L+E ++ + V+++ + K +V TG LQK+ R++A+E + L Sbjct: 550 FEQEGSQLLLRE-LQEAGVNLDYLGEKVAADAALAGKTVVLTGKLQKLTRNQAKEKLLSL 608 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 GA V+ +S+KTD+++ G + GSKL KAQ+LG++I +E+ Sbjct: 609 GANVAGSVSKKTDLVVAGTDAGSKLTKAQELGIEIRDED 647 >gi|170079241|ref|YP_001735879.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002] gi|254781436|sp|B1XLV0|DNLJ_SYNP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169886910|gb|ACB00624.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002] Length = 678 Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 230/698 (32%), Positives = 361/698 (51%), Gaps = 53/698 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 L+ L ++ YY P + D+ YD L R A+ A P L P+ P +IG Sbjct: 9 LAQLRSQLQKAAYAYYVLDAPFMEDAVYDQLYRELVALETAHPQLI---TPDSPTQRIGD 65 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + V H+IP SLE ++ +L ++ R R + + + E KIDG+ I Sbjct: 66 QPATQFTSVKHNIPLYSLENAFDFGELTQWEQRWQRALAGEIPSDSGYVCELKIDGSAIA 125 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFL 199 + YE G V A RGDG +GE+++ +R I TIP L+L N P ++EVRGE ++ F Sbjct: 126 LTYENGILVRGATRGDGVTGEEITQNLRTIRTIPLRLNLDNPPPLVEVRGEAFLPLETFE 185 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG---KTSEIFAKGQY 255 +N E G +ANPRNAA+G LR+L+ + R L+FF + L + Q+ Sbjct: 186 KINQEREKAGENLFANPRNAAAGTLRQLDSRIVAARKLDFFAYTLHLPESHNSPQLNSQW 245 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+ ++ +GF VN + +Y+ + R LPY DG+V K+++FSLQ +L Sbjct: 246 EALEFLKKMGFRVNPNRELCPNLTAVKNYFEKWDEGRKKLPYLTDGVVVKLNDFSLQAEL 305 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G + PRW I+ K+A ++A T + DI + +GRTG +TP+A +EPV + G + ATLHN Sbjct: 306 GFTQKFPRWAIALKYAAEEAPTTVKDIIVNVGRTGAVTPMAVMEPVQLAGTTVQRATLHN 365 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED IK L D+R+GD V++++AGE+IP+V+ ++V+ R P+ FPS CP Sbjct: 366 EDRIKEL-----------DLRIGDTVVIRKAGEIIPEVLRVLVDLRPEATIPYEFPSHCP 414 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S +VR G+ VA RC +C A L H+ RDA +I+GLG++ + Sbjct: 415 ECNSALVR----PPGEAVA--RCVNS-SCPAILRGSLVHWAGRDALDIQGLGEKNVILLI 467 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + ++ ADI+ L Q S ++ G S NL +I +N R ++ Sbjct: 468 EHG----LVQSIADIYDLTSEQLQSLPRM------GQKSAANLIQAIAHSKNQDYARVLY 517 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR VG A LA+ + + + + + L V +G+ IAQ++V++ Sbjct: 518 GLGIRFVGKVNAEILAQNFPTLEQLQKA----------SFAQLQGVYGIGEEIAQSVVDW 567 Query: 616 YQNPRNICAVEALLKE-------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ N +E L + + + + +I K V TGTL ++R +A E Sbjct: 568 FRVDANQQLIEKLQQAGLTFAQTQTAQTQTAQTQANHQISGKTFVITGTLPTLKRTEAAE 627 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + G V++ +S+ TD ++ GDN GSKL+KA+QLG+ Sbjct: 628 KIKAAGGKVTSSVSKNTDYLVAGDNAGSKLDKARQLGI 665 >gi|302524940|ref|ZP_07277282.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4] gi|302433835|gb|EFL05651.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4] Length = 707 Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 228/709 (32%), Positives = 352/709 (49%), Gaps = 45/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ +L +EI H YY PII D ++DAL I +P L P+ P Sbjct: 15 RERHGALAEEIRGHQFRYYVLDSPIISDGQFDALLGDLQKIEDEYPALVT---PDSPTQN 71 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + H LSL+ ++ E+ ++ R+ +K+ S + E KIDG Sbjct: 72 VGGTFSTEFTAHDHLERMLSLDNVFTAEEFLAWVERV-----EKEIGSAEYLAELKIDGL 126 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193 I + YE GK RGDG +GEDV+ IR + +P L+ +P+++EVRGEVY Sbjct: 127 AINLLYENGKLTRGLTRGDGRTGEDVTLNIRTLDQVPDRLTGTDEFPVPKLVEVRGEVYF 186 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFA 251 DFL LN +M+ G+ PYANPRN A+G LR+ +P ITR L HGLGK Sbjct: 187 RVEDFLELNAKMVEAGKLPYANPRNTAAGSLRQKDPK-ITRERRLRLICHGLGKRDGFEP 245 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q + G PV+ R T + + R ++IDG+V KVD+ +L Sbjct: 246 VTQSHAYDALAAWGLPVSPYTRVLRTGKELTEHIAYWGEHRHDAEHEIDGVVIKVDQVAL 305 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++A T LLDI + +GRTG +TP A EPV + G+ + A Sbjct: 306 QRRLGTTSRAPRWAIAYKYPPEEAITMLLDIQVGVGRTGRVTPFAVTEPVKVAGSTVARA 365 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN++ +K R G + +GDR+++++AGEVIP+V+ +V+ R D + F P Sbjct: 366 TLHNQEEVK---------RKG--VLIGDRIVIRKAGEVIPEVLGPVVDARTGDEREFVMP 414 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C +++ + K + RC C AQ ERL H R AF+IE LG + Sbjct: 415 TECPECGTKLA--YQKEGDKDI---RCPNSQFCPAQLRERLFHLAGRGAFDIEVLGYEAA 469 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 A + D+F L G + L +++ ++ L Sbjct: 470 VALLD----ARVVADEGDVFDLNEESLAEVELFRTKAGDLSANARKLLVNLDSAKDRPLW 525 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + I +L IRHVG A++LA+ + S Q +A V VG IA A Sbjct: 526 KVIVALSIRHVGPTAAQALAREFGSLQRIEDTTEEELAD----------VDGVGPTIAHA 575 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + E+++ + VE + ++++ +E +V TG+L R +A+E + Sbjct: 576 VQEWFEVDWHREIVEKWRRAGVRMEEERDESIPRNLEGLSIVVTGSLDGFSRDEAKEAIM 635 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G + +S+KT ++VGD PGSK +KA QL V +++E F LL++ Sbjct: 636 ARGGKAAGSVSKKTSFVVVGDAPGSKYDKAVQLKVPVLDENGFRALLER 684 >gi|215405001|ref|ZP_03417182.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987] gi|289746820|ref|ZP_06506198.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987] gi|289687348|gb|EFD54836.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987] Length = 691 Score = 356 bits (913), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 227/709 (32%), Positives = 365/709 (51%), Gaps = 49/709 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ +L +E+ H YY PII D+E+D L RR +A+ P+L P+ P + Sbjct: 15 RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 71 Query: 79 GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + F+ V H LSL+ + ++L + RI+ + ++ + E KIDG Sbjct: 72 GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIH----AEVGDAAHYLCELKIDGV 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 +++ Y +G+ A+ RGDG +GEDV+ R I +P L+ +PE++EVRGEV+ Sbjct: 128 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 187 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG Sbjct: 188 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 247 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ +R G PV+ A G+ + Y+ E R + ++IDG+V KVDE Sbjct: 248 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEV 304 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + Sbjct: 305 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVG 364 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN IK R G + +GD V++++AG+VIP+V+ +V R + F Sbjct: 365 QATLHNASEIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFI 413 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C+S + + K G A RC C Q ER+ H SR+ +IE LG + Sbjct: 414 MPTTCPECRSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYE 468 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +++ I ++F L R T G + L +++K + Sbjct: 469 AGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAP 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG AR+LA + S ++ I A + D L V VG IA Sbjct: 525 LWRVLVALSIRHVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGPTIA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 A+ E++ + V+ + +++V + +V TG+L R A+E Sbjct: 575 AAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEA 634 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G + +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL Sbjct: 635 IVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 683 >gi|332884007|gb|EGK04287.1| DNA ligase [Dysgonomonas mossii DSM 22836] Length = 665 Score = 356 bits (913), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 234/717 (32%), Positives = 377/717 (52%), Gaps = 63/717 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++Q + ++ +L +E++ H+ YY S P I D E+D + + +P+ DPN Sbjct: 1 MDQIKHQIDTLREELNKHNYDYYVLSAPTISDFEFDKKLKELTDLETQYPEYF---DPNS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEP 132 P ++G ++N S +V H P LSL + ++ F R+ KK N F E Sbjct: 58 PSQRVGSDINKSFKQVPHKYPMLSLGNTYTEAEITDFYNRV-----KKGLNDDFDIVCEL 112 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K DGT I++ Y G+ A RGDG G+DV+A +R I +IP R+ P E+RGE+ Sbjct: 113 KYDGTSISLTYINGQLTQAVTRGDGVQGDDVTANVRTIRSIPLRLHGAGYPAEFEIRGEI 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 + + F +N E +ANPRNA SG L++ +P + +R L+ +++ L ++ Sbjct: 173 LMPWSVFDDINKERAEQEEALFANPRNAGSGTLKQQDPKIVASRKLDSYLYYL-LGEDLP 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 G YE L K + GF +++ ++ T I +Y + R LP DG+V KV+ + Sbjct: 232 TDGHYENLIKAKEWGFKISDATKKCKTLDEIFAYIHYWDKERKNLPVATDGIVLKVNSLT 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 QK LG ++ PRW I+ KF +QA T L + Q+GRTG +TPVA L PV + G + Sbjct: 292 QQKNLGFTSKFPRWAIAFKFQAEQAVTTLESVSYQVGRTGAITPVANLRPVKLSGTTVKR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+L+NEDYI L D+ + D+V V++ GE+IPK+ + V +R+ F Sbjct: 352 ASLYNEDYINSL-----------DLHINDQVYVEKGGEIIPKITGVDVAQRNIFDAKVEF 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 CP C + +V+D A + C ++C Q R++HF++R A NI G G + Sbjct: 401 IKDCPECGTPLVKDEGE------AIYYCPNDVSCPPQIKGRIEHFLTRKAMNIAG-GTET 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + A IR AD++TL+ + + + + + S NL DSI+ ++ Sbjct: 454 VEHLYN----AGYIRNIADLYTLKWQD------VSRLERWAEKSAKNLIDSIHASVSVPY 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F+LGIR+VG +A+ LA + +I+ + A +D L +V +GD IAQ Sbjct: 504 ERVLFALGIRYVGETVAKKLALAF-------PDIDLLQAATIED---LTQVDEIGDRIAQ 553 Query: 611 AIVEFYQNPRNICAVEALLK-----EVSPSI--GRHEKNVSSEIENKKLVFTGTLQKIQR 663 +IV+++ NP N+ + L E+S SI R EK ++ +V +GT +K R Sbjct: 554 SIVKYFSNPNNLEVINKLRTFGLRFELSESIIAQRTEK-----LKGLSIVISGTFEKYSR 608 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + Q G S +S KT ++ GDN G +KLEKA+ LG+ I+NE+ FL +L+ Sbjct: 609 DEYKSMIEQNGGKNSGSISSKTSYVLAGDNMGPAKLEKAKSLGIPIINEDDFLKMLE 665 >gi|227877013|ref|ZP_03995105.1| DNA ligase [Lactobacillus crispatus JV-V01] gi|256850560|ref|ZP_05555986.1| DNA ligase [Lactobacillus crispatus MV-1A-US] gi|227863384|gb|EEJ70811.1| DNA ligase [Lactobacillus crispatus JV-V01] gi|256712583|gb|EEU27578.1| DNA ligase [Lactobacillus crispatus MV-1A-US] Length = 668 Score = 356 bits (913), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 221/710 (31%), Positives = 379/710 (53%), Gaps = 55/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++++A+KE +SL ++++ + YY P + D+ YD R + FP++ P Sbjct: 4 ITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG+++ KV H IP LS+ +++ +L+ F R+ QK + + + +E Sbjct: 61 DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRM----QKLVGHPVEYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE GK V A+ RG+G+ GEDV+A + I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+SK F LN E G +ANPRNAA+G LR+L+P R L+ F++ E Sbjct: 175 YMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEI 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q++ +QKM LGF N R+ T + ++ +E + R++L Y IDG+V K+D+ Sbjct: 235 T-SQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLG 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 294 IEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY+ + +R+GD V + +AG++IP++ ++++ +R D+ + Sbjct: 354 ASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAYQI 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C ++V + A RC +C AQ E + HF SR A NI GLG + Sbjct: 403 PTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++D ++ AD++ L + + + F + S+ NL +++ + S+ Sbjct: 456 VKQLI-AKDLVHNV---ADLYHL------TADDLAQLDHFKEKSINNLLTALDNSKQNSV 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E I LGI HVGA+ AR + AQ+ N+ + D + + +G IA+ Sbjct: 506 ELLITGLGIDHVGAKAARLI----------AQKFKNLAKIMSLDVQEIASIDTIGMTIAE 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-----NKKLVFTGTLQKIQRHK 665 ++ ++ P ++ L+E ++ + +EIE +K +V TG L+ R + Sbjct: 556 SMTTYFAQPEAQKVIDE-LRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + + LGA V+ +S KTD +I G + GSK KAQ LGV ++ EE+ + Sbjct: 615 FTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAI 664 >gi|187734527|ref|YP_001876639.1| DNA ligase, NAD-dependent [Akkermansia muciniphila ATCC BAA-835] gi|254781249|sp|B2UL69|DNLJ_AKKM8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|187424579|gb|ACD03858.1| DNA ligase, NAD-dependent [Akkermansia muciniphila ATCC BAA-835] Length = 794 Score = 356 bits (913), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 228/779 (29%), Positives = 381/779 (48%), Gaps = 104/779 (13%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A + + L E+ H+ YY+ ++P I D+EYDAL + + A P+L+ DP+ P Sbjct: 43 DPAHRRIDYLRSELRRHNRLYYEQAEPEISDAEYDALFLELEKLEKAHPELS---DPDSP 99 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNI-------EDLRKFITRIYRFWQKKDDNSIF 127 ++GG ++ H++P LS++ I+ E+L +F ++ R Q ++ + Sbjct: 100 TRRVGGAPLQGFNQIRHAVPMLSIDDIFEQRDAPVPDEELAEFYHKLSRALQTEN---VP 156 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++EPKIDG ++I Y GK YAA RGDG G+DV+A +R I ++P L P ++EV Sbjct: 157 VSVEPKIDGVALSIMYRNGKLAYAATRGDGDVGDDVTANVRTIRSVPLTLPPGAPPVLEV 216 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 RGEV++ F LN+E A G +ANPRNA +G L++L+P + R L F HGLG Sbjct: 217 RGEVFMPNEAFAKLNEERDADGLPAFANPRNATAGTLKQLDPRQVAARPLAFLAHGLGAY 276 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + + +R G P N V ++ ++ +R TLPY DG V K+ Sbjct: 277 EGPELRDAKDFWNMLRHCGIPCNEPVYYTDSLESTRQAVRDIDRLRHTLPYGTDGAVIKI 336 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + ++ LG AR+PRW ++KF +Q T LL+I +Q+GRTG+LTPVA L+PV + G+ Sbjct: 337 SSTATREALGATARAPRWAAAYKFPPEQKETTLLNIVVQVGRTGVLTPVAELQPVLLSGS 396 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN+D I +D+R+GD VLV++AGE+IP V+ + +++R DA+ Sbjct: 397 TVARATLHNQDEID-----------RKDVRIGDTVLVEKAGEIIPAVLKVNLSKRPQDAR 445 Query: 427 PFSF----PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P+S CP C + ++++ GK+ A RCT C AQ + + HF SR A + Sbjct: 446 PYSILEATKGLCPACGNPIMKE----EGKV--AWRCT-NFTCPAQAVTGITHFCSRSALD 498 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT--KIENILGFGDVSVTNLYD 540 +E +G + S + ++ D+F+L Q + E +G+ + D Sbjct: 499 VESIGSSVAEALRSSGLASSAL----DLFSLMPDQLANLNLGTPEEPRRYGEKNARKALD 554 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-----------QEINNIIA 589 ++ R + LER++ + GI VG +A++LA + ++ A E+ A Sbjct: 555 ALQNARGLPLERWLIAFGIPLVGEVVAKALADTHPDLKHVADSPYLRDIVRLDELVEQAA 614 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQ-----------------------------NPR 620 N + + G + A+A+ E +Q + Sbjct: 615 KTNPNTRENKKAVKEGALSAEAVQERHQELMEEIDRLTAPYLATGYLRKNTAKFSYGSEI 674 Query: 621 NICAVEALLKEVSPSIGRHEKNV---------------------SSEIENKKLVFTGTLQ 659 + A ++L + + G H +V + + K V TGTL Sbjct: 675 GVAAAKSLRSFFASAAGNHTMDVLHRLGINPQSQSYRASLLEIPAGSLSGKTFVITGTLS 734 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R ++ + G + +S+ T ++ G+ GSK +KA +LGV +++EE F ++ Sbjct: 735 H-PRDYFEQLIASHGGKATGAISKSTSCLLAGNGGGSKRDKALKLGVPVISEEDFYKMI 792 >gi|76787534|ref|YP_329595.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae A909] gi|123771969|sp|Q3K1K8|DNLJ_STRA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76562591|gb|ABA45175.1| DNA ligase, NAD-dependent [Streptococcus agalactiae A909] Length = 652 Score = 356 bits (913), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 238/713 (33%), Positives = 380/713 (53%), Gaps = 70/713 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E EL SL ++ + YY P + DS+YD L R + P+ PN Sbjct: 1 MENRMNELVSL---LNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNS 54 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +++GG + K H P SL+ ++ E+L F R+ K + + + E K Sbjct: 55 PTHRVGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRV-----KAEFPTAAYMAELK 109 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG +++ Y G A RGDG+ GE+++ ++ + IP L L+ I VRGE Y+ Sbjct: 110 IDGLSVSLTYVNGVLQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYL 167 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 K F A+N E A G + +ANPRNAA+G LR+LN + R L F++ + S + Sbjct: 168 PKESFEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLYQ--EASPTQKE 225 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q ++L+++ GF VN+ +++ I + ++ R +LPYDIDG+V KV+ ++Q Sbjct: 226 TQDDVLKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQ 285 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ AT Sbjct: 286 EELGFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRAT 345 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DYI +DIR+GD V+V +AG++IP V+++++++R+ + P Sbjct: 346 LHNVDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRN-QQEVMLIPK 393 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S +V G++ A RC L C Q ERL HF SRDA NI G G ++ Sbjct: 394 LCPSCGSELVH----FEGEV--ALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVE 446 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNIS 549 F A I ADI+ L IEN+L G + S T +Y +I + S Sbjct: 447 KLFD----AHLIADVADIYRL---------SIENLLTLDGIKEKSATKIYHAIQSSKENS 493 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 E+ +F LGIRHVG++ +R L + + + + +Q IA + +G +IA Sbjct: 494 AEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIA 543 Query: 610 QAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQRH 664 +++ F++ V+ LL+E++ + K VS++ + L V TG L+K+ R+ Sbjct: 544 KSLHTFFEKEE----VDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRN 599 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +A+E + LGA V+ +S+KTD+I+ G + GSKL KAQ LG+ I +E+ L L Sbjct: 600 EAKEKLQNLGAKVTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652 >gi|76788861|ref|YP_327947.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis A/HAR-13] gi|123731251|sp|Q3KMM3|DNLJ_CHLTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76167391|gb|AAX50399.1| NAD-dependent DNA ligase [Chlamydia trachomatis A/HAR-13] Length = 663 Score = 356 bits (913), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 235/704 (33%), Positives = 382/704 (54%), Gaps = 53/704 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL- 75 +R + +L E+ HD CYY ++P I D YD R I P+ S P L Sbjct: 5 SRDDYIALCTELVEHDRCYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ G+ + V HS P LS+ ++++++L +F +R +K S ++LE KID Sbjct: 65 DRPSGQFPV----VPHSSPMLSIANVYSLQELEEFFSRT----EKLLGYSPGYSLELKID 116 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + IRYEK F A RG+G GED++A + I ++P L PE +EVRGEV++S Sbjct: 117 GIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSY 176 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 F LN G+ +ANPRNAA G L+ L+ + R L+ V+GL ++ + Sbjct: 177 EAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ GF V +Q + +V E++ +R+ LP IDG+V KVD + Q + Sbjct: 235 FENLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDR 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+ Sbjct: 295 LGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLY 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D I+ +DIR+GD V V++ GEVIPK+V I + +R +++P+ PS C Sbjct: 355 NQDEIE-----------KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C VV++ + RC L CS LE++ F S+ A NI+ LG++ + Sbjct: 404 PVCHEPVVKE--------KVSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ I +DIF L + ++ + GF D S+ NL SI + ++L+R + Sbjct: 455 FE----VGLISSCSDIFAL------TEEDLKQVPGFKDRSIQNLLASIAGAKKVALDRLL 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +L I VG+ A +LA ++++ ++ +I + D+ L+ + +G +A +IV Sbjct: 505 TALSIPFVGSSGAIALADHFVT-------LDKVIEASLDE---LMSIEGIGPKVAASIVA 554 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ N + ++E+ + + + + ++ K V TGTLQ++ R +A+E + LG Sbjct: 555 FFSKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLG 613 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS+ +S+ T +I G G KL+KAQ LG+ I NE + L +L Sbjct: 614 GKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRIL 657 >gi|81749525|sp|Q8FPZ7|DNLJ_COREF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|23493177|dbj|BAC18148.1| putative DNA ligase [Corynebacterium efficiens YS-314] Length = 938 Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 229/711 (32%), Positives = 358/711 (50%), Gaps = 52/711 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q R+ + L +++ YH D YY +P I D+++DAL R+ + P+LA P+ P Sbjct: 267 QLRRTWNELAEKVRYHRDLYYN-QQPEIPDADFDALFRQLQDLEEQHPELAV---PDSPT 322 Query: 76 NKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + S V H LSL+ +++ E+LR ++ R + + E K Sbjct: 323 KEVGAPVTEQSSFDNVEHLERMLSLDNVFDEEELRDWLART---------PAKRYLTELK 373 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRG 189 IDG I + Y G AA RGDG GED++A R I IP L+ IP ++EVRG Sbjct: 374 IDGLSIDLVYRNGMLERAATRGDGRVGEDITANARVIGDIPHELTATEEYPIPAVLEVRG 433 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EV+I DF +N + I G KP+ANPRNAA+G LR+ NP D+ R L HG+G + Sbjct: 434 EVFIPIEDFADVNAQRIEDGGKPFANPRNAAAGSLRQKNPEDVKKRRLRMITHGIGYSEG 493 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + G P ++ T +V R +++DGLV KVD+ Sbjct: 494 FQPASQHDAYLALAAWGLPTSSYTEAVETADAVVDKVLYWADHRHDALHEMDGLVIKVDD 553 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q+ LG +R+PRW I++K+ ++ +T+L+DI + +GRTG +TP A +EPV + G+ + Sbjct: 554 IASQRALGSTSRAPRWAIAYKYPPEEVTTKLIDIKVSVGRTGRVTPFAMMEPVFVAGSTV 613 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN+ +K R G + +GD V+V++AGEVIP+V+ +V R + F Sbjct: 614 SMATLHNQSEVK---------RKG--VLIGDTVVVRKAGEVIPEVLGPVVELRDGTEREF 662 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C S + T A RC +C Q +RL + R AF+IE LG+ Sbjct: 663 VFPEHCPECGSTLA-----PTRAEDADWRCPNTRSCPGQLSQRLTYIAGRGAFDIEALGE 717 Query: 489 QQLDFFFKSEDPAFSIRI-PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ I + A +F L + G + S L ++ +R+N Sbjct: 718 KGAQDLIRN-----GILVDEAGLFDLTEEDLLESDVYTTKAGAVNASGRKLLANLEQRKN 772 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R + +L IRHVG AR+LA Y S Q + +A + VG I Sbjct: 773 TDLWRVLVALSIRHVGPTAARALAGRYRSMQKLVDAPVDELAETDG----------VGMI 822 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IAQ+ ++++ + V+ + + +E +V TG L+ R + Sbjct: 823 IAQSFKDWFEVDWHRAIVDTWAAAGVTMEDAETEQLEQTLEGLTIVVTGGLEGFTRDSVK 882 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + G S +S+KTD ++VG+N GSK KA++LG+ I++EE F+ LL Sbjct: 883 EAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLTILDEEAFVRLL 933 >gi|146321044|ref|YP_001200755.1| NAD-dependent DNA ligase LigA [Streptococcus suis 98HAH33] gi|253751920|ref|YP_003025061.1| DNA ligase [Streptococcus suis SC84] gi|253753743|ref|YP_003026884.1| DNA ligase [Streptococcus suis P1/7] gi|253755379|ref|YP_003028519.1| DNA ligase [Streptococcus suis BM407] gi|166216248|sp|A4W1W6|DNLJ_STRS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145691850|gb|ABP92355.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Streptococcus suis 98HAH33] gi|251816209|emb|CAZ51836.1| DNA ligase [Streptococcus suis SC84] gi|251817843|emb|CAZ55596.1| DNA ligase [Streptococcus suis BM407] gi|251819989|emb|CAR46142.1| DNA ligase [Streptococcus suis P1/7] gi|292558495|gb|ADE31496.1| NAD-dependent DNA ligase [Streptococcus suis GZ1] gi|319758281|gb|ADV70223.1| NAD-dependent DNA ligase LigA [Streptococcus suis JS14] Length = 652 Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 220/682 (32%), Positives = 367/682 (53%), Gaps = 59/682 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YYQ +P + D+EYD L R + A P+L P+ P +++GG+M K +H P Sbjct: 19 YYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHRVGGKMLDGFEKYSHVYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YE G V A R Sbjct: 76 LFSLQDAFSREELEAFDQRV-----RKEFPQATYICELKIDGLSISLTYEAGNLVVGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + +P L +PE ++ VRGE Y+ K F +N + G Sbjct: 131 GDGSVGENITENLKRVADVP----LTLPEAVDITVRGECYMPKASFDRVNKQRQEAGEAE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 + NPRNAA+G LR+L+ + R L F++ SE A Q ++L+K+ LGF N+ Sbjct: 187 FVNPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSE--ATSQSQVLEKLDALGFVTNHE 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A + + ++ R LPY+IDG+V KV++ ++Q++LG ++PRW +++KF Sbjct: 245 YCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +L +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR+GD V+V +AG++IP V+ +V++ + + PS CP CQS DL + Sbjct: 354 EKDIRIGDTVIVYKAGDIIPAVLK-VVDKYRKEQEIMPIPSHCPSCQS----DLQHYEDE 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 + A RC + C +Q + +L+HF SRDA NI GLG ++ F A + ADI+ Sbjct: 409 V--ALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLFG----AGLVHDVADIY 461 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L + + + GF + S LY +I ++ S E +F LGIRHVG++ ++ L Sbjct: 462 KL------TVDDLLTLEGFKEKSANKLYQAIQTSKSNSAECLLFGLGIRHVGSKASKILV 515 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + + + A IA + +G +IA+++ F+ + + A LKE Sbjct: 516 EKFGDLETLAFADQEAIAS----------LEGLGQVIAKSLTTFFAS-EGAQQLLAELKE 564 Query: 632 VSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 ++ + V ++ + +V TG L++++R++A+ + LGA V+ +S+KT++++ Sbjct: 565 AKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGANVAGSVSKKTNLVV 624 Query: 690 VGDNPGSKLEKAQQLGVKIMNE 711 G + GSKL KAQ+LG++I +E Sbjct: 625 AGTDAGSKLTKAQELGIEIKDE 646 >gi|237713195|ref|ZP_04543676.1| DNA ligase [Bacteroides sp. D1] gi|262406666|ref|ZP_06083215.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22] gi|294643460|ref|ZP_06721274.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a] gi|294808131|ref|ZP_06766900.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b] gi|229446662|gb|EEO52453.1| DNA ligase [Bacteroides sp. D1] gi|262355369|gb|EEZ04460.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22] gi|292641208|gb|EFF59412.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a] gi|294444674|gb|EFG13372.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b] Length = 666 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 234/713 (32%), Positives = 370/713 (51%), Gaps = 63/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E+ H+ YY + P I D E+D R + A P+ +D N P + Sbjct: 4 KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDLNKNFTQVAHKYPMLSLANTYSEAEVTDFYDRV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 117 SISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPASFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + + +R L+ +++ L + G Y Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK L Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A T L + Q+GRTG +TPVA L+PV + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTCLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429 D I+GL D+ +GD V V++ GE+IPK+ + DA+ F Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 F CP C S++VR G+ AAH C AC Q +++HF+SR A NI+GLG + Sbjct: 400 FIVNCPECGSKLVR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F++ I AD++ L + I+ + G+ S N+ I + + + Sbjct: 454 TVDMFYR----LGLIENTADLYKL------TVDDIKGLDRMGEKSAENIVTGIAQSKTVP 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER IF+LGIR VG +A+ +AK + + + Q D L+ + +G+ IA Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFENIDDLQQA----------DLEKLVSIDEIGEKIA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666 Q+I+ ++ N N V LKE + R E+++S ++ + +V +G R + Sbjct: 554 QSILAYFANESNRELVNR-LKEAGLQLYRTEEDLSGYTDKLAGQSIVISGVFIHHSRDEY 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +E + + G +S KT I+ GDN G +KLEKA++LG+ I++E++FL L+ Sbjct: 613 KELIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGITILSEDEFLKLI 665 >gi|22537014|ref|NP_687865.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae 2603V/R] gi|81454504|sp|Q8E084|DNLJ_STRA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|22533870|gb|AAM99737.1|AE014230_17 DNA ligase, NAD-dependent [Streptococcus agalactiae 2603V/R] Length = 652 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 238/713 (33%), Positives = 380/713 (53%), Gaps = 70/713 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E EL SL ++ + YY P + DS+YD L R + P+ PN Sbjct: 1 MENRMNELVSL---LNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNS 54 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +++GG + K H P SL+ ++ E+L F R+ K + + + E K Sbjct: 55 PTHRVGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRV-----KAEFPTAAYMAELK 109 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG +++ Y G A RGDG+ GE+++ ++ + IP L L+ I VRGE Y+ Sbjct: 110 IDGLSVSLTYVNGVLQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYL 167 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 K F A+N E A G + +ANPRNAA+G LR+LN + R L F++ + S + Sbjct: 168 PKESFEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLYQ--EASPTQKE 225 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q ++L+++ GF VN+ +++ I + ++ R +LPYDIDG+V KV+ ++Q Sbjct: 226 TQDDVLKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSIAMQ 285 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ AT Sbjct: 286 EELGFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRAT 345 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DYI +DIR+GD V+V +AG++IP V+++++++R+ + P Sbjct: 346 LHNVDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRN-QQEVMLIPK 393 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S +V G++ A RC L C Q ERL HF SRDA NI G G ++ Sbjct: 394 LCPSCGSELVH----FEGEV--ALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVE 446 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNIS 549 F A I ADI+ L IEN+L G + S T +Y +I + S Sbjct: 447 KLFD----AHLIADVADIYRL---------SIENLLTLDGIKEKSATKIYHAIQSSKENS 493 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 E+ +F LGIRHVG++ +R L + + + + +Q IA + +G +IA Sbjct: 494 AEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIA 543 Query: 610 QAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQRH 664 +++ F++ V+ LL+E++ + K VS++ + L V TG L+K+ R+ Sbjct: 544 KSLHTFFEKEE----VDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRN 599 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +A+E + LGA V+ +S+KTD+I+ G + GSKL KAQ LG+ I +E+ L L Sbjct: 600 EAKEKLQNLGAKVTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652 >gi|13235527|emb|CAC33654.1| DNA ligase [Rickettsia montanensis] Length = 488 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 197/508 (38%), Positives = 313/508 (61%), Gaps = 23/508 (4%) Query: 213 YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L +FV+ G T + A Q ++L K++ GF +N Sbjct: 1 FANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNLASSQDQLLTKLKECGFNINEI 60 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + A++ I ++Y +K+ R LPY+IDG+VYK+++F+LQ ++G ARSPR+ +HKF Sbjct: 61 SKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFALQNRMGFIARSPRFATAHKFP 120 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 T+LL I +Q+GRTG LTPVA LEP+ IGG ++ ATLHN I Sbjct: 121 AIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEI-----------A 169 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +D+R+ D V ++RAG+VIPK++ + ++R D F P FC C S+ L+ Sbjct: 170 RKDVRIKDYVFLQRAGDVIPKIMGVDFDKRPSDTATFDTPLFCLSCNSK----LHYMPED 225 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 ++ RC GL C AQ ER++HFVS++A +IEGLG++Q++F + I P DIF Sbjct: 226 III--RCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQIEFLIDNG----LISNPLDIF 279 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L+ + +S K+EN+ G+G SV NL+ +I K +N+SL RFI++LGIR +G + A+ LA Sbjct: 280 FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRRIGEQNAKLLA 339 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 K + SY NF ++ + + D + L + +GD I I++F+ NI ++ L Sbjct: 340 KEFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGAI 399 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ + + SS + +K +VFTG+L I R +A+ +LGA V+A +S TD+++ G Sbjct: 400 LNIEDYKETREQSS-LTDKIVVFTGSLPTISRAEAKATAEKLGAKVAAGVSSNTDLVVAG 458 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + GSKL+KA++L +KI++EE++L L++ Sbjct: 459 VDAGSKLKKAKELNIKIIDEEEWLTLIK 486 >gi|76798177|ref|ZP_00780429.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21] gi|77405561|ref|ZP_00782652.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B] gi|77410701|ref|ZP_00787060.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111] gi|76586485|gb|EAO62991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21] gi|77163237|gb|EAO74189.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111] gi|77175868|gb|EAO78646.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B] Length = 648 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 233/692 (33%), Positives = 371/692 (53%), Gaps = 67/692 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DS+YD L R + P+ PN P +++GG + K H P Sbjct: 15 YYTQDNPTVSDSQYDQLYRELVELEKQHPENIL---PNSPTHRVGGLVLEGFEKYQHEYP 71 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ K + + + E KIDG +++ Y G A R Sbjct: 72 LYSLQDAFSKEELIAFDKRV-----KAEFPTAAYMAELKIDGLSVSLTYVNGVLQVGATR 126 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG+ GE+++ ++ + IP L L+ I VRGE Y+ K F A+N E A G + +A Sbjct: 127 GDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEAINIEKRANGEQEFA 184 Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+LN + R L F++ + S + Q ++L+++ GF VN+ Sbjct: 185 NPRNAAAGTLRQLNTGIVAKRKLATFLYQ--EASPTQKETQDDVLKELESYGFSVNHHRL 242 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 +++ I + ++ R +LPYDIDG+V KV+ ++Q++LG ++PRW I++KF + Sbjct: 243 ISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIAYKFPAE 302 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 + +L +D +GRTG++TP A L PV + G ++ ATLHN DYI + Sbjct: 303 EKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEK 351 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIR+GD V+V +AG++IP V+++++++R+ + P CP C S +V G++ Sbjct: 352 DIRIGDTVVVYKAGDIIPAVLNVVMSKRN-QQEVMLIPKLCPSCGSELVH----FEGEV- 405 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RC L C Q ERL HF SRDA NI G G ++ F A I ADI+ L Sbjct: 406 -ALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD----AHLIADVADIYRL 459 Query: 514 QRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 IEN+L G + S T +Y +I + S E+ +F LGIRHVG++ +R L Sbjct: 460 S---------IENLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGLGIRHVGSKASRLL 510 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + + + + +Q IA + +G +IA+++ F++ V+ LL+ Sbjct: 511 LEEFGNLRQLSQASQESIA----------SIDGLGGVIAKSLHTFFEKEE----VDKLLE 556 Query: 631 EVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 E++ + K VS++ + L V TG L+K+ R++A+E + LGA V+ +S+KT Sbjct: 557 ELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVTGSVSKKT 616 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 D+I+ G + GSKL KAQ LG+ I +E+ L L Sbjct: 617 DLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 648 >gi|296171259|ref|ZP_06852663.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894227|gb|EFG73984.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 693 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 225/712 (31%), Positives = 362/712 (50%), Gaps = 49/712 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+ L E+ H YY PI+ D+E+D + A+ +P+L P+ P Sbjct: 12 EVRRRWQELADEVREHQFRYYIKDAPIVSDAEFDTMFNDLLALEDRYPEL---RVPDSPT 68 Query: 76 NKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG + F + H LSL+ +++ ++L + R+ + + ++ E KI Sbjct: 69 QLVGGAGFATDFTEAAHLERMLSLDDVFDRDELVAWNNRV----ENEVGRDPYYLCELKI 124 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP----RVLSLNIPEIIEVRGE 190 DG +++ Y G+ AA RGDG GEDV+ R I +P R L IP ++EVRGE Sbjct: 125 DGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLTRAADLPIPAVLEVRGE 184 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI 249 V+ DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HG+G+T Sbjct: 185 VFFMLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTDGF 244 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ ++ G PV + + + Y+ E R + ++IDG+V KV Sbjct: 245 APASLHDAYTALKAWGLPVAEQTARVRGLAAVEDRIGYWGEH---RYEIDHEIDGVVVKV 301 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+F+LQ++LG +R+PRW +++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ Sbjct: 302 DDFALQRRLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGS 361 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN + +V R G + +GD V++++AG+VIP+V+ +V+ R + Sbjct: 362 TVGLATLHN---------AAEVKRKG--VLIGDTVMIRKAGDVIPEVLGPVVDLRDGSER 410 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P+ CP C + + K G A RC +C AQ ER+ H R A +IEGL Sbjct: 411 EFVMPTTCPECGTTLA---PAKEGD--ADIRCPNARSCPAQLRERVFHVAGRGALDIEGL 465 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + K A I D+FTL T G + L D+++K + Sbjct: 466 GYEAATALLK----AGVIADEGDLFTLTEDDLLRTDLFRTKAGTLSANGRRLLDNLDKAK 521 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 ++L R + +L IRHVG AR+LA + S ++ I+A + + L V VG Sbjct: 522 TVALWRVLVALSIRHVGPTAARALATEFGS-------LDAIMAASTE---RLAAVEGVGP 571 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IA A+ E++ + V+ + +V +E +V TG+L R A Sbjct: 572 TIAAALTEWFTVDWHRAIVDKWRAAGVRMADERDASVPRTLEGLTVVVTGSLAGFSRDDA 631 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + G + +S+KTD ++ GD PGSK +KA +LGV +++E+ F LL Sbjct: 632 KEAIIARGGKAAGSVSKKTDYVVAGDAPGSKYDKAVKLGVPVLDEDGFRELL 683 >gi|110833810|ref|YP_692669.1| NAD-dependent DNA ligase LigA [Alcanivorax borkumensis SK2] gi|123345666|sp|Q0VR01|DNLJ_ALCBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110646921|emb|CAL16397.1| DNA ligase (NAD+) [Alcanivorax borkumensis SK2] Length = 777 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 227/635 (35%), Positives = 337/635 (53%), Gaps = 54/635 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF-KVTHSI 93 YY P + D+EYD + R + +PDL ++ P + G++ L F +V H + Sbjct: 25 YYVQDDPAVPDAEYDRVFRALKDLEAQYPDLVTADSPTQRV----GDVPLDAFEQVQHEV 80 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMITIRYEKGKFVYAA 152 P LSL+ ++ E+L F RI ++ D + I + EPK+DG +++ YE G+ V AA Sbjct: 81 PMLSLDNAFDDEELWAFDKRIR---ERLDVSEIIDYVAEPKLDGLAVSLLYENGELVRAA 137 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211 RGDG +GE+++ R I ++P L N +P+ +EVRGEV + F LN G K Sbjct: 138 TRGDGQTGENITVNARTIRSVPLKLRGNDVPKRLEVRGEVVMPHAGFEELNARQQEAGLK 197 Query: 212 PYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVN 269 +ANPRNAA+G LR+L+ +R L F+ + + + ML +R G VN Sbjct: 198 LFANPRNAAAGSLRQLDSRITASRPLEFYAYSMAQLEGWEHPPTHSAMLDALRDWGLRVN 257 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 +R + ++ +Y + R L YDIDG+VYKV+ F Q LG +R+PRW I+HK Sbjct: 258 PEIRVCHGVEALLRFYQGILEKREHLDYDIDGVVYKVNRFDWQDDLGFVSRAPRWAIAHK 317 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 F ++ T L +D Q+GRTG LTPVARLEPV++GG +++NATLHN D I+ L Sbjct: 318 FPAQEELTVLNGVDWQVGRTGALTPVARLEPVHVGGVIVSNATLHNIDEIQRL------- 370 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449 DIR+GD V+V RAG+VIPKVV + R +AQ + PS CP+C S ++R Sbjct: 371 ----DIRIGDTVVVYRAGDVIPKVVRALPERRPANAQGIALPSSCPVCGSEILR------ 420 Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509 G RCTGGL C Q+ E +KHF SR A +I+GLG + +D E I AD Sbjct: 421 GHDQVVARCTGGLICGDQRREAIKHFASRRAMDIDGLGDKLVDALVDQE----LITTVAD 476 Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 ++ L+ Q ++ G+ S NL ++ + + L RF+F+LGI +G E A++ Sbjct: 477 LYRLKAEQVAGLERM------GEKSADNLIAALEASKTVGLGRFLFALGILQIGEETAKN 530 Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 LA + ++ + + L L+ VP VG +A+AI F+ N ++ LL Sbjct: 531 LADCF----------GDLDSIRHAPLLLLLAVPDVGLEVAKAIGAFFAESDNEAVIDGLL 580 Query: 630 KE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 + VSP V S K L L+ +R Sbjct: 581 AQGVSP----QASGVPSAAFVKSLTLAQLLKSAKR 611 Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 60/94 (63%), Gaps = 1/94 (1%) Query: 630 KEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 K+V+ R + + S+ +E + V TGTL++ R++A++ + QLGA V+ +S+ T ++ Sbjct: 678 KKVADMAARAPQEMESQPLEGQTWVLTGTLEQFTRNQAKQALQQLGAKVAGSVSKNTRMV 737 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + G + GSKL KA+ LG+++ +E L LL Q+ Sbjct: 738 VAGASAGSKLAKAESLGIEVCDEAALLSLLNQHG 771 >gi|332665881|ref|YP_004448669.1| DNA ligase [Haliscomenobacter hydrossis DSM 1100] gi|332334695|gb|AEE51796.1| DNA ligase [Haliscomenobacter hydrossis DSM 1100] Length = 711 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 241/733 (32%), Positives = 388/733 (52%), Gaps = 67/733 (9%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + A + Q EL L I YH+ YY + P++ D EYD L + + + P+L + Sbjct: 24 VHAQTPAQQHAELCGL---IIYHEWRYYIQNDPVLSDYEYDQLFKLLERLEEVHPELVSA 80 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ ++ ++ +V H IP LSL +N EDL + I RF D + + Sbjct: 81 DSPS---QRVSADLTEDFSQVEHLIPMLSLANSYNAEDLNDWDASIKRFLNIDPDTDLDY 137 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IE 186 +EPK DG I + YE V AA RG+G GE+++ + I +IP + I +E Sbjct: 138 GVEPKFDGGSIALVYENDVLVRAATRGNGIIGEEITNNAKVIRSIPLRAEFSKYGIHRVE 197 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245 +RGEV I K+ F +N + A G +AN RN A+G LR +P ++ R L F++ LG Sbjct: 198 LRGEVLIRKDIFEKMNAKRAAEGITLFANARNTATGGLRIKDPKEVAKRGLEAFIYTLGY 257 Query: 246 TSEIFAKGQYEMLQKMRC----------LGFPVNNGVRQ-ANTFHGIVSYYNEMKSIRST 294 ++ + ML + LGF V R+ ++ + N + R Sbjct: 258 ATD---QAGNNMLNQFATHLESLELLEKLGFKVPVQERKLCKNIQEVIDFCNYWQQQRDG 314 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 Y+IDG+V KV+ LQ++ G + PRW I+ KF KQA+++LL+++ Q+G+ G +TP Sbjct: 315 YAYEIDGMVAKVNSRELQERSGFTSHHPRWAIAFKFQAKQATSKLLNVEYQVGKIGSITP 374 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA+LEPV + G +++ +LHNED+I RD+R+GD VLV+RAG+VIP +V Sbjct: 375 VAKLEPVQLAGVTVSSVSLHNEDFIT-----------SRDLRLGDTVLVERAGDVIPYIV 423 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + R P FP FCPI + +L + + AA RC + C Q L+R+ Sbjct: 424 KAMDELRDGSEVPIVFPQFCPINDTDTPVELLREGEE--AAWRCPNCV-CGQQDLQRIIF 480 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 VS+DA +I+G+GKQ ++ FF+ +R AD++ L T++ + GFG+ S Sbjct: 481 HVSKDAMDIDGMGKQIVERFFE----LGWVRNFADVYNL------DFTQVAQLEGFGEKS 530 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 T L +I K + + R ++SL I H+G ++++ LA EIN+++ + D Sbjct: 531 ATKLQAAIEKAKKNPISRVLYSLSIHHLGKKVSKLLAA----------EINHVL--DLKD 578 Query: 595 WL--SLIRVPLVGDIIAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSE--I 647 W ++ VG ++A +EF+QN NI + EAL + + K S++ + Sbjct: 579 WQIEDYTKIKDVGPVVAANAIEFFQNELNIELIQQMEALGVNLHQTEEDKPKAASADAPL 638 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-V 706 K ++FTG+L K+ R +AQE GA + +S+ DI++VG+ GSKL+KA++LG V Sbjct: 639 AGKTILFTGSLAKMGRKEAQEKAEAAGAKNISAVSKNLDILVVGEEAGSKLKKARELGTV 698 Query: 707 KIMNEEQFLFLLQ 719 I+ E++FL +L+ Sbjct: 699 MILTEDEFLAMLE 711 >gi|326797492|ref|YP_004315311.1| DNA ligase [Sphingobacterium sp. 21] gi|326548256|gb|ADZ76641.1| DNA ligase [Sphingobacterium sp. 21] Length = 672 Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 216/709 (30%), Positives = 388/709 (54%), Gaps = 48/709 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + +L +E++ H+ YY ++P I D ++D A+ +P+ DP+ P Sbjct: 6 ALSRIEALTKELNDHNYKYYVLAQPSISDFDFDQKLAELAALEKDYPEFL---DPDSPTQ 62 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K+GG++ V H P LSL ++ ++L+ F RI +K + + E K DG Sbjct: 63 KVGGDITKQFKTVRHKWPMLSLSNTYSEKELKDFDERI----RKVLGDDFEYVCELKFDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 I++ YE+G RGDG G++V++ I+ I ++P ++ S + P++ E+RGEV++ + Sbjct: 119 LSISLTYEQGVLTRGVTRGDGTQGDEVTSNIKTIKSVPNKIKSGHFPDLFEIRGEVFMHR 178 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-GKTSEIFAKG 253 F LN E + PYANPRN A+G ++ + +++ R L+ F++ L + K Sbjct: 179 AAFERLNKERLENDEIPYANPRNFAAGTIKLQDSSEVAKRPLDCFLYFLYMDNRDRLFKT 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E L+ ++ GF V+ + T ++ + + R L YDIDG+V KV+ ++ Q Sbjct: 239 HWESLEAVKSWGFHVSEHTKLCRTIDEVLQFISYWDDARHKLSYDIDGIVIKVNSYAQQH 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++K+ ++ T L + Q+GRTG +TPVA LEPV + G + ATL Sbjct: 299 ELGFTAKSPRWAIAYKYKAEEVETILKSVSYQVGRTGAVTPVANLEPVQLSGTTVKRATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN + I L D+ D V+V++ GE+IPK++ + ++R PD + ++P+ Sbjct: 359 HNANEITRL-----------DLHELDTVMVEKGGEIIPKIIGVNKDKRVPDTKQIAYPTH 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C + ++R K G+ A H C L C Q + +++HF+SR A +IEG+G + ++ Sbjct: 408 CPVCNTVLIR----KEGE--AVHYCPNELGCPPQIVGKIQHFISRKAMDIEGMGNETVEV 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 +K ++ +D++ L ++ ++E I FG+ S+ N+ I K + ++ Sbjct: 462 LYKKG----LLKQISDLYQLHHHKE----ELEQIERFGEKSINNMLLGIQKSKERPFQKV 513 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F LGIR+VG IA+ LA S++N I+N+I + ++ + V +G+ IAQ++ Sbjct: 514 LFGLGIRYVGETIAKKLAN---SFKN----IDNLIQASVEE---IAAVDEIGERIAQSVK 563 Query: 614 EFYQNPRNICAVEALLKE-VSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVT 671 E++ N ++ VE L E + +I E + S+++ +K V +G + R + + Sbjct: 564 EYFSNTLHLHQVEILKGENLQFAIIEEEFQLNSNKLADKSFVISGVFEHYSREDLGKIIV 623 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 Q G + + +S K + ++ GDN G SKL KAQ+ + I++E + + ++Q Sbjct: 624 QNGGKLLSGISAKLNYLVAGDNMGPSKLAKAQKFNIPIISEVELIKMIQ 672 >gi|296876694|ref|ZP_06900742.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC 15912] gi|296432196|gb|EFH17995.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC 15912] Length = 652 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 230/699 (32%), Positives = 364/699 (52%), Gaps = 64/699 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL L +Y YY P + DSEYD L R + A PD P P +++ Sbjct: 6 KELVELLNRYAYE---YYTKDTPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ +K+ +SI + E KIDG Sbjct: 60 GGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRV-----RKEFSSISYVCELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G V A RGDG GED++ ++ + IP VL P I VRGE Y+ + F Sbjct: 115 ISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPE--PVNITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ T I N + S Q +L Sbjct: 173 DRVNQIRQENGEPEFANPRNAAAGTLRQLD-TKIVAKRNLATFLYQEVSPTDQSSQEGVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 +K+ LGF VN A I + ++ +R LPYDIDG+V KV++ ++Q++LG Sbjct: 232 EKLARLGFVVNQERVLAEDMEQIWEFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ ++L +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DI D V+V +AG++IP V+ ++ ++R D Q + P+ CP CQ Sbjct: 352 I-----------AEKDIHQDDTVIVYKAGDIIPAVLRVVKDKRVSD-QALAIPTQCPSCQ 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS- 497 S ++ + A RC L C AQ E L HF SRDA NI GLG ++ F + Sbjct: 400 SELLHFEDE------VALRCINPL-CPAQMKEGLNHFASRDAMNITGLGPAVVEKLFAAQ 452 Query: 498 --EDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ED A R+ D+ TL+ GF + S LY++I + S E+ + Sbjct: 453 LVEDVAGIYRLTVEDLLTLE--------------GFKEKSAEKLYEAIQASKENSAEKLL 498 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIRHVG++++ Q QE ++I D + + +G ++A+++ Sbjct: 499 FGLGIRHVGSKVS----------QILLQEFHDIDQLATADPERIASIDSLGMVVAESLKS 548 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ + ++ LKE S ++ + V+++ + +V TG L+++ R +A+ + Sbjct: 549 YFAQEGSKRLLQE-LKEASVNMVYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLES 607 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 LGA V+ +S+KTD+++ G + GSKL KAQ+LG+++ +E Sbjct: 608 LGAKVTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDE 646 >gi|311113170|ref|YP_003984392.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931] gi|310944664|gb|ADP40958.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931] Length = 740 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 239/733 (32%), Positives = 383/733 (52%), Gaps = 65/733 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R E + L I YYQ P + D+EYD L RR + I +P L ++ P + Sbjct: 30 RAEYAELTDTIRTARHDYYQEDAPTLSDAEYDRLYRRLEQIEAQYPALIANDSPT---QE 86 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE++ + VTH + SLE ++++E+LR ++T+ + + + E KIDG Sbjct: 87 VGGEVSEAFSPVTHLVRMYSLEDVFSLEELRAWLTKAEENTRLLTGTAPQWLTELKIDGL 146 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKN 196 + + Y G V AA RGDG +GEDV+ +R I +IP+ L+ N P +EVRGEV+IS Sbjct: 147 AVNLLYRNGVLVRAATRGDGTTGEDVTHNVRTIASIPQKLAGENHPAELEVRGEVFISSA 206 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 DF LN++M++ G+ P+ANPRNAA+G LR+ + R L+ +VHG+G + + QY Sbjct: 207 DFKKLNEKMVSEGKNPFANPRNAAAGSLRQKDSAVTAERPLSMYVHGVGSRTGLDVNSQY 266 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + +++ G P + + + I+ Y E R +L ++IDG+V KV++F Q QL Sbjct: 267 QTYEQLAAWGLPTSPYSKLFTSVDDILRYIAEYGEKRHSLVHEIDGIVIKVNDFVAQTQL 326 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R PRW +++K+ ++ +T+LLDI + +GRTG +TP +EPV + G+ + ATLHN Sbjct: 327 GYTSRVPRWAVAYKYPPEEVNTKLLDIRVDVGRTGRVTPYGVMEPVLVSGSTVERATLHN 386 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 +D +K + + +GD V++++AG+VIP++V +V R+ + F P+ CP Sbjct: 387 QDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVALRNGHEREFVMPTECP 435 Query: 436 ICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 C + L P K G + RC +C AQ ER+ + SR AF+IE LG + Sbjct: 436 SCGTT----LAPGKEGDV--DMRCPNYRSCPAQLTERIYYAASRGAFDIEALGFEAAKAL 489 Query: 495 FKSEDP--------AFSIRIPA-DIFTLQRRQQ-----TSTTKIENILGF---------- 530 +P AF + A D+ ++ R++ T K E + F Sbjct: 490 TAPAEPEQPPLTSEAFLFDLTAEDLRDVKIRREKKVKGVGTGKFELVPYFYTKPTKAKPD 549 Query: 531 --GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 + NL+ + K ++ L R + +L IRHVG AR+LA + S AQ Sbjct: 550 PVPTKNTQNLFVELEKAKSQPLWRVLVALSIRHVGPTAARALATEFGSMDAIAQA----- 604 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSE- 646 D L V VG +IA +I+E++ + E L + + E++ S E Sbjct: 605 -----DRDRLAAVDGVGGVIADSIIEWFATDWH---REVLARWADAGVRMEDERDASIER 656 Query: 647 -IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 +E +V TGTL R A+E + G S +S+KT ++ G + GSKL+KA+ LG Sbjct: 657 TLEGVTVVVTGTLVNYSRDSAKEAIIVRGGRASGSVSKKTHFVVAGASAGSKLDKAEALG 716 Query: 706 VKIMNEEQFLFLL 718 + +++E+ F LL Sbjct: 717 IPVLDEDGFTKLL 729 >gi|119961355|ref|YP_947208.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1] gi|166215391|sp|A1R4P6|DNLJ_ARTAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119948214|gb|ABM07125.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1] Length = 768 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 224/736 (30%), Positives = 369/736 (50%), Gaps = 61/736 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E R E L + + YYQ P + D+E+D L RR + + P+L ++ P Sbjct: 31 ESLRDEYEQLADLVRKYRYAYYQEDSPTVSDAEFDELYRRLEELEALHPELVSNDSPT-- 88 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIFFTLEP 132 ++GGE++ + V H SL+ ++++++L ++ + K D+ I + E Sbjct: 89 -QEVGGEVSSAFAAVEHLQRMYSLDDVFSLDELEAWVRKAEASVAKLGDSVPPIAWLTEL 147 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEV 191 KIDG + + Y GK V AA RGDG +GED++ + I IPR LS P +E+RGEV Sbjct: 148 KIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIKEIPRQLSGSGYPSEVEIRGEV 207 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 +I FL N+ ++A G+ P ANPRNAA+G LR+ +P + R L+ FVHG+G + Sbjct: 208 FIPSKAFLEFNESLVAAGKAPLANPRNAAAGSLRQKDPAETAKRPLSMFVHGIGAREGLD 267 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 AK Q E + + G PV+ ++ TF ++ + + R L ++IDG+V K+D+F+ Sbjct: 268 AKSQSESYKLLEEWGLPVSPYLKVLETFDDVLKFIADYGERRHKLVHEIDGIVVKIDDFA 327 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG +R PRW ++K+ ++ T+LLDI + +GRTG +TP +EPV + G+ + Sbjct: 328 TQRALGYTSRVPRWAAAYKYPPEEVHTKLLDIAVNVGRTGRVTPFGLMEPVKVAGSTVGM 387 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV---NERHPDAQP 427 ATLHN+D +K + + +GD V++++AG+VIP++V ++ +++ P + Sbjct: 388 ATLHNQDVVK-----------AKGVMIGDIVILRKAGDVIPEIVGPVLALRDKQEPPVRE 436 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P+ CP C + L P V RC +C +Q ER+ H SR AF+IE LG Sbjct: 437 FVMPTECPSCGT----PLAPAKESDVDI-RCPNAKSCPSQLRERVFHVASRGAFDIEALG 491 Query: 488 KQQLDFFFKSEDPAF-SIRIPADIFTLQRRQQTST----TKIENILGFGD---------- 532 + + +P + A +F+L R K +G G+ Sbjct: 492 WEAAVALTQPAEPETPPLTSEARLFSLTREDLADVLIRREKRSKGVGTGEYELVPYFYTK 551 Query: 533 ----------VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 + L+ + K + L R + +L IRHVG +R+LA + S Sbjct: 552 GTAKSPSKPTATTEKLFAELEKAKQQPLWRVLVALSIRHVGPTASRALATAFGSMDAIRN 611 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 +AH V VG IA A+ E++ + V++ + + Sbjct: 612 ATEEQMAH----------VDGVGPTIAVALKEWFAVDWHNEIVDSWAAAGVRMEDERDAS 661 Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 V +E +V TGTL R +A+E + G S +S+ T ++ G++ G+KL+KA+ Sbjct: 662 VPRTLEGLTVVVTGTLPNFSRDEAKEAIIIRGGKASGSVSKNTSYLVAGESAGTKLDKAE 721 Query: 703 QLGVKIMNEEQFLFLL 718 QLGV +++E+ F LL Sbjct: 722 QLGVPVLDEDGFRELL 737 >gi|125718295|ref|YP_001035428.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK36] gi|166216249|sp|A3CNX3|DNLJ_STRSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|125498212|gb|ABN44878.1| DNA ligase, putative [Streptococcus sanguinis SK36] Length = 652 Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 228/698 (32%), Positives = 368/698 (52%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F R+ +K+ + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRV-----RKEFPQVSYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YE G V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYENGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ +++ + Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E+L K+ L F VN A++ + + ++ R +LPY+IDG+V KV++ ++Q++L Sbjct: 229 EVLNKLADLDFSVNPTHILADSIESVWEFIEKIAEERDSLPYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + + PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EALEVPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D+ + R + ++EN F + S LY +I + S ER +F Sbjct: 450 AQ-------NLVKDVAGIYRLTIENLLELEN---FKEKSANKLYTAIQASKKNSAERLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614 LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPRLSQASQEEIAA----------IDSLGTVIAQSLHTY 549 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F Q I E V+ + + + +V TG LQK+ R++A+E + LG Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ Sbjct: 610 ANVSGSVSKKTDLVVAGADAGSKLAKAQELGIEIRDED 647 >gi|312984361|ref|ZP_07791702.1| DNA ligase, NAD-dependent [Lactobacillus crispatus CTV-05] gi|310894255|gb|EFQ43336.1| DNA ligase, NAD-dependent [Lactobacillus crispatus CTV-05] Length = 666 Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 221/710 (31%), Positives = 378/710 (53%), Gaps = 55/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L++++A+KE +SL ++++ + YY P + D+ YD R + FP++ P Sbjct: 2 LTLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG+++ KV H IP LS+ +++ +L+ F R+ QK + + + +E Sbjct: 59 DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRM----QKLVGHPVEYNVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE GK V A+ RG+G+ GEDV+A + I IP+ L P EVRGE Sbjct: 115 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVRGEC 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+ K F LN E G +ANPRNAA+G LR+L+P R L+ F++ E Sbjct: 173 YMGKEAFAKLNAEREEQGLVVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEI 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q++ +QKM LGF N R+ T + ++ +E + R++L Y IDG+V K+D+ Sbjct: 233 T-SQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLG 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 292 IEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY+ + +R+GD V + +AG++IP++ ++++ +R D+ + Sbjct: 352 ASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAYQI 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C ++V + A RC +C AQ E + HF SR A NI GLG + Sbjct: 401 PTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++D ++ AD++ L + + + F + S+ NL +++ + S+ Sbjct: 454 VKQLI-AKDLVHNV---ADLYHL------TADDLAQLDHFKEKSINNLLTALDNSKQNSV 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E I LGI HVGA+ AR + AQ+ N+ + D + + +G IA+ Sbjct: 504 ELLITGLGIDHVGAKAARLI----------AQKFKNLAKIMSLDVQEIASIDTIGMTIAE 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-----NKKLVFTGTLQKIQRHK 665 ++ ++ P ++ L+E ++ + +EIE +K +V TG L+ R + Sbjct: 554 SMTTYFAQPEAQKVIDE-LRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRSE 612 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + + LGA V+ +S KTD +I G + GSK KAQ LGV ++ EE+ + Sbjct: 613 FTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAI 662 >gi|295692390|ref|YP_003601000.1| DNA ligase [Lactobacillus crispatus ST1] gi|295030496|emb|CBL49975.1| DNA ligase [Lactobacillus crispatus ST1] Length = 668 Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 221/710 (31%), Positives = 379/710 (53%), Gaps = 55/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++++A+KE +SL ++++ + YY P + D+ YD R + FP++ P Sbjct: 4 ITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG+++ KV H IP LS+ +++ +L+ F R+ QK + + + +E Sbjct: 61 DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRM----QKLVGHPVEYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE GK V A+ RG+G+ GEDV+A + I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+SK F LN E G +ANPRNAA+G LR+L+P R L+ F++ E Sbjct: 175 YMSKEAFAKLNAEREEQGLAVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEI 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q++ +QKM LGF N R+ + ++ +E + R++L Y IDG+V K+D+ Sbjct: 235 T-SQHQAIQKMHDLGFHTNETGRKLKILDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLG 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 294 IEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY+ + IR+GD V + +AG++IP++ ++++ +R D+ + Sbjct: 354 ASLHNPDYL-----------NEKGIRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAYQI 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C ++V + A RC +C AQ E + HF SR A NI GLG + Sbjct: 403 PTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++D ++ AD++ L + + + F + S+ NL +++ + S+ Sbjct: 456 VKQLI-AKDLVHNV---ADLYHL------TADDLAQLDHFKEKSINNLLTALDNSKQNSV 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E I LGI HVGA+ AR + AQ+ N+ + D + + +G IA+ Sbjct: 506 ELLITGLGIDHVGAKAARLI----------AQKFKNLAKIMSLDVQEIASIDTIGMTIAE 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-----NKKLVFTGTLQKIQRHK 665 ++ ++ P ++ L+E + ++ + +EIE +K +V TG L+ R + Sbjct: 556 SMTTYFAQPEAQKVIDE-LRESALNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + + LGA V+ +S KTD +I G + GSK KAQ LGV ++ EE+ + Sbjct: 615 FTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAI 664 >gi|15610151|ref|NP_217530.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Rv] gi|31794191|ref|NP_856684.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis AF2122/97] gi|121638896|ref|YP_979120.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662865|ref|YP_001284388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra] gi|148824204|ref|YP_001288958.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis F11] gi|161350059|ref|NP_337609.2| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CDC1551] gi|167967816|ref|ZP_02550093.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra] gi|215431968|ref|ZP_03429887.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054] gi|219559049|ref|ZP_03538125.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T17] gi|224991388|ref|YP_002646077.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|254365649|ref|ZP_04981694.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str. Haarlem] gi|260188040|ref|ZP_05765514.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CPHL_A] gi|260206343|ref|ZP_05773834.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis K85] gi|289448688|ref|ZP_06438432.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A] gi|289553196|ref|ZP_06442406.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605] gi|289571216|ref|ZP_06451443.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17] gi|289575722|ref|ZP_06455949.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85] gi|289755132|ref|ZP_06514510.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054] gi|294993895|ref|ZP_06799586.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 210] gi|297635642|ref|ZP_06953422.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN 4207] gi|297732640|ref|ZP_06961758.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN R506] gi|306777310|ref|ZP_07415647.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001] gi|306785860|ref|ZP_07424182.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003] gi|306789901|ref|ZP_07428223.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004] gi|306794711|ref|ZP_07433013.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005] gi|306798954|ref|ZP_07437256.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006] gi|306969091|ref|ZP_07481752.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009] gi|306973427|ref|ZP_07486088.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010] gi|307081136|ref|ZP_07490306.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011] gi|307085740|ref|ZP_07494853.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012] gi|313659972|ref|ZP_07816852.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN V2475] gi|54036987|sp|P63973|DNLJ_MYCTU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|54036988|sp|P63974|DNLJ_MYCBO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215822|sp|A1KN09|DNLJ_MYCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216214|sp|A5U726|DNLJ_MYCTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781375|sp|C1AGD0|DNLJ_MYCBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2791611|emb|CAA16099.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) [Mycobacterium tuberculosis H37Rv] gi|31619786|emb|CAD96726.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) [Mycobacterium bovis AF2122/97] gi|121494544|emb|CAL73025.1| Probable dna ligase [nad dependent] ligA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151162|gb|EBA43207.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str. Haarlem] gi|148507017|gb|ABQ74826.1| DNA ligase (NAD dependent) LigA [Mycobacterium tuberculosis H37Ra] gi|148722731|gb|ABR07356.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis F11] gi|224774503|dbj|BAH27309.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|289421646|gb|EFD18847.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A] gi|289437828|gb|EFD20321.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605] gi|289540153|gb|EFD44731.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85] gi|289544970|gb|EFD48618.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17] gi|289695719|gb|EFD63148.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054] gi|308214358|gb|EFO73757.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001] gi|308329532|gb|EFP18383.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003] gi|308333670|gb|EFP22521.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004] gi|308337029|gb|EFP25880.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005] gi|308340842|gb|EFP29693.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006] gi|308353381|gb|EFP42232.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009] gi|308357226|gb|EFP46077.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010] gi|308361179|gb|EFP50030.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011] gi|308364771|gb|EFP53622.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012] gi|323718395|gb|EGB27569.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CDC1551A] gi|326904628|gb|EGE51561.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis W-148] gi|328457668|gb|AEB03091.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 4207] Length = 691 Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 227/709 (32%), Positives = 364/709 (51%), Gaps = 49/709 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ +L +E+ H YY PII D+E+D L RR +A+ P+L P+ P + Sbjct: 15 RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 71 Query: 79 GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + F+ V H LSL+ + ++L + RI+ + ++ + E KIDG Sbjct: 72 GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIH----AEVGDAAHYLCELKIDGV 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 +++ Y +G+ A+ RGDG +GEDV+ R I +P L+ +PE++EVRGEV+ Sbjct: 128 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 187 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG Sbjct: 188 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 247 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ +R G PV+ A G+ + Y+ E R + ++IDG+V KVDE Sbjct: 248 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEV 304 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + Sbjct: 305 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVG 364 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN IK R G + +GD V++++AG+VIP+V+ +V R + F Sbjct: 365 QATLHNASEIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFI 413 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S + + K G A RC C Q ER+ H SR+ +IE LG + Sbjct: 414 MPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYE 468 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +++ I ++F L R T G + L +++K + Sbjct: 469 AGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAP 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG AR+LA + S ++ I A + D L V VG IA Sbjct: 525 LWRVLVALSIRHVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGPTIA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 A+ E++ + V+ + +++V + +V TG+L R A+E Sbjct: 575 AAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEA 634 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G + +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL Sbjct: 635 IVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 683 >gi|238854176|ref|ZP_04644523.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4] gi|238833252|gb|EEQ25542.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4] Length = 668 Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 226/722 (31%), Positives = 379/722 (52%), Gaps = 70/722 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ QA +++ L +++ + YY P++ D+ YD + + FPDL S+ Sbjct: 4 LTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTSDSI 63 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++GGE+ L KV H IP LS+ +++ ++L++F RI + + + + +E Sbjct: 64 T---QRVGGEIKSDLSKVEHPIPMLSMGDVFSKDELKEFDERITKLV----GHPVAYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y GK A+ RG+G GEDV+A + I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G + +ANPRNAA+G LR+L+ IT R L+ F++ + Sbjct: 175 YMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPKN 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + +M LGF N R+ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAIDEMNRLGFHTNQTGRRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G +++ Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTVVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DY++ + +R+GD V + +AG++IP++ +++N+R D++P+ Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPYQ 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 402 IPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGPR 454 Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 KQ +D F + AD++ L Q + + F D S+TNL SI Sbjct: 455 IVKQLIDKNF--------VNDVADLYHLSNEQ------LSQLDHFKDKSITNLLTSIENS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + S E +F LGI HVGA+ AR + + Y + + +Q L + +G Sbjct: 501 KQNSAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658 + IA+++ ++ P + + LL+E+ S +G E+ + K +V TG L Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + + Sbjct: 607 SDFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIVKI 666 Query: 719 QQ 720 ++ Sbjct: 667 EK 668 >gi|256852262|ref|ZP_05557648.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN] gi|260661706|ref|ZP_05862617.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN] gi|282934844|ref|ZP_06340077.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1] gi|297205571|ref|ZP_06922967.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16] gi|256615308|gb|EEU20499.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN] gi|260547453|gb|EEX23432.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN] gi|281301075|gb|EFA93386.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1] gi|297150149|gb|EFH30446.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16] Length = 669 Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 234/721 (32%), Positives = 393/721 (54%), Gaps = 68/721 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ + A++E+ +L ++++ + YY P + D+ YD ++ + FP+L P Sbjct: 4 LNKKNAQEEIETLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQKLVELEKQFPELVT---P 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GGE+ L KV H +P LS+ +++ ++L +F RI QK + + +E Sbjct: 61 DSITQRVGGEIKSDLGKVEHQVPMLSMGDVFSKDELFEFDQRI----QKLVGGPVAYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRG 189 KIDG +++ Y GK + A+ RG+G GEDV+ ++ I IP++L PE EVRG Sbjct: 117 LKIDGLSLSLEYVDGKLIQASTRGNGRIGEDVTKNVQYIDDIPKIL----PEKLTTEVRG 172 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTS 247 E Y+ K FL LN E G +ANPRNAA+G LR+L+P R L+ F++ + Sbjct: 173 ECYMGKAAFLKLNTERDENGEAIFANPRNAAAGSLRQLDPKVTKKRNLSTFIYTWVNPPK 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 EI + Q++ +Q+M LGF N R+ + +Y +E S R +L Y IDG+V KVD Sbjct: 233 EITS--QHQAIQQMSKLGFHTNETGRKLANLDEVFAYIDEYTSKRDSLSYGIDGIVLKVD 290 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQKQLG + PRW I++KF ++ T + +I +GRTG++TP A ++PV + G Sbjct: 291 DLTLQKQLGNTVKVPRWEIAYKFPPEEQETIVHEIVWTVGRTGVVTPTAVMDPVELAGTT 350 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ A LHN D +K +D+R+GD V + +AG++IP++ ++++++R ++Q Sbjct: 351 VSRAVLHNPDLLK-----------QKDVRIGDTVKLHKAGDIIPEISEVVLSKRPANSQV 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P+ CP C +V G++ A RC AC AQ E + HF SR A +I GLG Sbjct: 400 YEIPTECPSCGQSLVH----LEGEV--ALRCINP-ACPAQIEEGIIHFASRPAMDIMGLG 452 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + + + ++ AD++ L + + + FGD S++NL +I+ R Sbjct: 453 PKIVRQLIQHD----LVKDVADLYHL------TADDLAELDHFGDKSISNLLTAIDNSRQ 502 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 S+E + LGI HVGA+ A L Q F + +N I+ + D L + +G+ Sbjct: 503 NSVELLLNGLGIDHVGAKAA------LLIVQRF-KNLNKIMQASVSD---LTAIDTIGET 552 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSE------IENKKLVFTGTL 658 IA++I ++ +V+ L++E+ S I ++VS E +NK +V TG L Sbjct: 553 IAESITTYFAQ----ASVQKLVQELIDSGVNIDYLGEDVSEEEIVDNFFKNKTVVLTGKL 608 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + LGA V++ +S+KTD +I G + GSKL KA+ L + ++ EE+ + + Sbjct: 609 AHFTRSEFTKKLESLGAKVTSSVSKKTDYVIYGTDAGSKLTKAESLKIALLTEEEAIEKI 668 Query: 719 Q 719 Q Sbjct: 669 Q 669 >gi|308377195|ref|ZP_07441467.2| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008] gi|13882885|gb|AAK47423.1| DNA ligase [Mycobacterium tuberculosis CDC1551] gi|308348655|gb|EFP37506.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008] Length = 679 Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 227/709 (32%), Positives = 364/709 (51%), Gaps = 49/709 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ +L +E+ H YY PII D+E+D L RR +A+ P+L P+ P + Sbjct: 3 RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 59 Query: 79 GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + F+ V H LSL+ + ++L + RI+ + ++ + E KIDG Sbjct: 60 GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIH----AEVGDAAHYLCELKIDGV 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 +++ Y +G+ A+ RGDG +GEDV+ R I +P L+ +PE++EVRGEV+ Sbjct: 116 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 175 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG Sbjct: 176 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 235 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ +R G PV+ A G+ + Y+ E R + ++IDG+V KVDE Sbjct: 236 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEV 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + Sbjct: 293 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVG 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN IK R G + +GD V++++AG+VIP+V+ +V R + F Sbjct: 353 QATLHNASEIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFI 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S + + K G A RC C Q ER+ H SR+ +IE LG + Sbjct: 402 MPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYE 456 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +++ I ++F L R T G + L +++K + Sbjct: 457 AGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAP 512 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG AR+LA + S ++ I A + D L V VG IA Sbjct: 513 LWRVLVALSIRHVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGPTIA 562 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 A+ E++ + V+ + +++V + +V TG+L R A+E Sbjct: 563 AAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEA 622 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G + +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL Sbjct: 623 IVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 671 >gi|300361107|ref|ZP_07057284.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03] gi|300353726|gb|EFJ69597.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03] Length = 668 Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 228/722 (31%), Positives = 378/722 (52%), Gaps = 70/722 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ QA +++ L +++ + YY PI+ D+ YD + + FPDL S+ Sbjct: 4 LTHNQASQKVDELRKKLDEWAEDYYAKDAPIVEDAVYDKAYQELVELEKRFPDLVTSDSI 63 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++GGE+ L KV H IP LS+ +++ ++L++F RI + + + + +E Sbjct: 64 T---QRVGGEIKSDLSKVEHPIPMLSMGDVFSKDELKEFDDRITKLV----GHPVAYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y GK A+ RG+G GEDV+A + I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G + +ANPRNAA+G LR+L+ IT R L+ F++ Sbjct: 175 YMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPRN 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + +M LGF N R+ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAIDEMNRLGFHTNQTGRRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A + PV + G +++ Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETIVKEIEWTVGRTGVVTPTAVMNPVQLAGTVVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DY++ + +R+GD V + +AG++IP++ +++N+R D++P+ Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 402 IPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGPR 454 Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 KQ +D F + AD++ L Q + + F D S+TNL SI Sbjct: 455 IVKQLIDKKF--------VNDVADLYHLTNEQ------LSQLDHFKDKSITNLLTSIENS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + S E +F LGI HVGA+ AR + + Y + + +Q LI + +G Sbjct: 501 KQNSAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELISIDTIG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658 + IA+++ ++ P + + LL+E+ S +G E+ + K +V TG L Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + + Sbjct: 607 SDFTRSEFTKKLQNLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKI 666 Query: 719 QQ 720 ++ Sbjct: 667 EK 668 >gi|288919113|ref|ZP_06413452.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f] gi|288349457|gb|EFC83695.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f] Length = 715 Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 225/717 (31%), Positives = 358/717 (49%), Gaps = 56/717 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L +++ H YY P I D+EYDAL R D I +P+L ++ P K Sbjct: 39 RARAAELARDLEEHAHRYYVLDAPTIADAEYDALLRELDQIEQQYPELRTADSPT---QK 95 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + G + VTH LSL+ +++ + + R R + + E KIDG Sbjct: 96 VAGSYSTLFTPVTHLERLLSLDNVFDEDGFHAWAARAAR-----EQPVEAWLCELKIDGL 150 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 + + YE G V AA RGDG +GED++ +R + ++P R+ +PE++EVRGEVY Sbjct: 151 AVDLVYEAGALVSAATRGDGRTGEDITLNVRTLRSVPARLRGPGVPELLEVRGEVYFPTA 210 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255 F LN ++ G+ P+ANPRNAA+G LR+ +P R L VHGLG + Q Sbjct: 211 GFAELNASLVEAGKAPFANPRNAAAGSLRQKDPRVTAGRPLAMIVHGLGANRGFEVESQS 270 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 +++ LG PV+ + ++++ R + ++IDG+V KVD F+ Q++L Sbjct: 271 AAYERLAELGLPVSTRYQVCAGVDEVLAFVRAWGEQRHDVEHEIDGVVIKVDGFAQQRRL 330 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +++PRW ++ K+ ++ +TRL DI + +GRTG +TP LEPV + G+ + ATLHN Sbjct: 331 GATSKAPRWAVAFKYPPEEVTTRLRDIQVNVGRTGRVTPFGVLEPVKVAGSTVGMATLHN 390 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D + G + + +GD V++++AG+VIP++V +V+ R + F P+ CP Sbjct: 391 IDEV-----------GRKGVLIGDVVVLRKAGDVIPEIVSPVVDLRDGSERAFVMPTHCP 439 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +VR P+ + RC ++C AQ E + H SR A +I+GLG + Sbjct: 440 ECGTELVR---PEGEVDI---RCPNTVSCPAQLRESVFHLASRGALDIDGLGYETATVLL 493 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 IR DIF L + E + GF V + I R+ L R + Sbjct: 494 AE----GRIRDIGDIFHL------APESFEGLRGFASKKVDQILRGIEAARDRPLWRLLV 543 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 L IRHVG AR+LA+ E+ ++ A L V VG IA+A+V++ Sbjct: 544 GLSIRHVGPTAARALAR----------ELRSLDAIAAAPAERLAAVDGVGPKIAEAVVDW 593 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKAQEYVT 671 + +PR+ ++ ++ R + E ++ +V TGTLQ R A E V Sbjct: 594 FADPRH----RDVVARIAAGGARLADEGAGEGPGLLDGVVVVITGTLQGWSRDTATEAVQ 649 Query: 672 QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727 G V+ +S+KT ++ G +PG SK +KA L + +++E F LL R+ Sbjct: 650 ARGGKVTGSVSKKTTFVVAGVDPGASKYQKALSLRIPLLDETGFAALLGDGADAARV 706 >gi|291277000|ref|YP_003516772.1| DNA ligase [Helicobacter mustelae 12198] gi|290964194|emb|CBG40040.1| DNA ligase [Helicobacter mustelae 12198] Length = 669 Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 234/707 (33%), Positives = 372/707 (52%), Gaps = 65/707 (9%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 ++ EQ K++ L++ ++YH YY PI D EYD L A P+ R + Sbjct: 19 SMEKEQYEKKVEQLKK-MAYH---YYVLDDPISSDEEYDILYHEVKGYEEAHPEAIREDS 74 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P ++G L K TH SL+ +++ E+L + +IY K+ FT Sbjct: 75 PT---QRVGMPPLLEFQKNTHRKKMWSLDDVFSFEELESWCQKIY-----KNHPEAIFTC 126 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVR 188 PK DG + + YE G + A RGDG GE V+ + IP+IP L IP +IE+R Sbjct: 127 SPKFDGASLNLLYENGDLISATTRGDGMQGELVTQNAKTIPSIP----LKIPHKGLIEIR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEV I+K+DF ALN + + G +ANPRNAA+G +R+L+ + R L F G G+ + Sbjct: 183 GEVVIAKSDFEALNKKRMEEGEALFANPRNAAAGSMRQLDSSITAQRKLRFIPWGFGQHT 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + E L+++ C GF V+ I YY E+ R LP +DG+V +D Sbjct: 243 -LGIDSFKEALEQVFCFGFSPIPFVQLCKNMQEIQRYYEEIMQRREDLPMMLDGMVVMLD 301 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 F +Q+++G +SPR+ ++KF + T++L I Q+GRTG++TPVA LEP+ I GA Sbjct: 302 SFLMQEKMGFTIKSPRFACAYKFPAVEKFTKILSIINQVGRTGVITPVAELEPIEIEGAR 361 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +T ATLHN I+ +DIR+ D V+V R+G+VIPK++ + R + + Sbjct: 362 VTRATLHNYKEIQ-----------KKDIRIFDEVVVIRSGDVIPKIIRPNIARRTGEEKA 410 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CPIC R++ + RC L C+A+ E + HFVS+ A NI+GLG Sbjct: 411 IEPPTHCPICGERLLIE--------EIFIRCQ-NLQCTARVRESIVHFVSKKALNIDGLG 461 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + F A ++ D+++L + + + GF + NL ++I +N Sbjct: 462 EKIIYQLF----AAGLVKNITDLYSLDYEE------LLRLEGFKEKKAKNLLEAIANTKN 511 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 I L R I +LGI H+G ++ LA + + F + D+ +L R+ G Sbjct: 512 IDLWRLIHALGIEHIGEGASKKLALAF-GLECF-----------DKDYDALTRIDGFGKE 559 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A++ +EF Q N + LLK ++P + + + V + KK+V TG++Q+ R + Sbjct: 560 MAESFLEFSQ--VNARLIHVLLKILTPKVQQTQNPVQNYFSAKKIVLTGSMQR-SREEVA 616 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + +GA +S +S K D +I G+NPGSKL+KA++LGV I++E +F Sbjct: 617 ALLEGVGAKISTSVSGKVDFVIYGENPGSKLDKARELGVGILSEAEF 663 >gi|160945211|ref|ZP_02092437.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii M21/2] gi|158442942|gb|EDP19947.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii M21/2] Length = 671 Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 234/715 (32%), Positives = 371/715 (51%), Gaps = 57/715 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E L +EQA+K + L I ++ YY P + D EYDAL R + FP L + Sbjct: 1 MEYLELEQAKKRVKELRAIIEKNNRLYYDQDAPELEDFEYDALTRELKELEAQFPQLVTA 60 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P K+GG + L KVTH++ SL ++ ++LR F R+ + + + Sbjct: 61 ASPT---QKVGGTASSKLPKVTHAVKMESLLDAFSFDELRDFDRRVREAGVEPE-----Y 112 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG ++ YE G+ V A+ RGDG GEDV+A +RAI +IP+ L + PE +EVR Sbjct: 113 VVEIKIDGLSCSLEYENGQLVRASTRGDGVVGEDVTANVRAIRSIPKTLK-DAPEFLEVR 171 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY+ F L E G P+ NPRNAA+G LR+ + +R L+ FV + + Sbjct: 172 GEVYMPHGAFQHLCAEQELQGAAPFKNPRNAAAGSLRQKDARITGSRGLSIFVFNVQQIR 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI---RSTLPYDIDGLVY 304 E L ++ LG PV+ + + H I E+++I RS L +D+DG V Sbjct: 232 GKTLTKHSESLDYLKSLGLPVSP---RYHVVHDIEDAIAEIENIGQNRSKLDFDMDGAVI 288 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++F+ ++ +G + PRW I+ K+ + T L I++ +GRTG+LTP A +PV + Sbjct: 289 KVNDFAQRELMGSTNKFPRWAIAFKYPPEVKETTLRSIEVAVGRTGVLTPTACFDPVFLA 348 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + ATLHNED+I+ + +GD + V++AG++IP+V+ V Sbjct: 349 GTTVARATLHNEDFIRQF-----------GLCIGDTIQVRKAGDIIPEVIG--VTHHAEG 395 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+P++ P+ CP C + VV + AA RC C AQ L + HF SRDA +IE Sbjct: 396 AEPYTMPTVCPSCGAPVVHLEDE------AALRCVNP-ECPAQALRNIIHFASRDAMDIE 448 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG+ + E + ADI+TL R Q K F + S NL +I Sbjct: 449 GLGEAVATQLVEKE----LVHSAADIYTLTREQLLELDK------FKEKSADNLLQAITA 498 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L++ +F GIR++G + A LA+++ + Q + ++ ++ Sbjct: 499 SKQNNLDKLLFGFGIRNIGDKAAALLAEHFGTLQAIREATAEQVS----------QIDGF 548 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G ++AQ++VEF+ V L + ++ + ++ K LV TGTL+ + R+ Sbjct: 549 GGVMAQSVVEFFAKEGTTDLVHR-LADAGVNMQWKGEPKGDKLAGKTLVVTGTLETLSRN 607 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ + + G S +S+KT ++ G GSKL KAQ LGV ++ E++FL +LQ Sbjct: 608 EAEALIVKNGGKASGSVSKKTAYVVAGAAAGSKLTKAQALGVPVLTEQEFLAMLQ 662 >gi|124026855|ref|YP_001015970.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL1A] gi|166216227|sp|A2C5E6|DNLJ_PROM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123961923|gb|ABM76706.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL1A] Length = 690 Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 238/724 (32%), Positives = 376/724 (51%), Gaps = 70/724 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL +L + +Y YY P I D+ YD L R I + P L + P+ ++ Sbjct: 13 KELRALLNKANY---SYYVLDSPEIDDAVYDQLYRELIEIENIHPSLITDDSPS---QRL 66 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEPK 133 GG + V H+IP LSL+ +N+ +L + RI + ++ N + E K Sbjct: 67 GGVPSKGFKNVEHNIPLLSLDNAFNLNELESWYGRISKLISSENKNIKKVDDLELICELK 126 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 IDG I++RYE G AA RGDG +GED++ IR I TIP R+L N P +E+RGE + Sbjct: 127 IDGNAISLRYENGILTRAATRGDGKTGEDITTNIRTISTIPLRLLLENPPSWVEIRGEAF 186 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL------GK 245 + N F LN E + +ANPRN+ +G LR+L+P + +R L+FF + L Sbjct: 187 MPNNIFNKLNIERKNTDQPLFANPRNSCAGTLRQLDPKIVASRKLDFFAYSLYFPENWEP 246 Query: 246 TSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 T F K Q E L+ ++ +GF VN T + YY + + L Y DG+V Sbjct: 247 TDNNFKKPISQSESLEFLKNIGFKVNTTYETTKTLNEANKYYKYWEVKKDFLAYATDGIV 306 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+D+F +Q LG ++PRW I+ K+ ++ +T+L I Q+GR+G +TPVA E + + Sbjct: 307 VKIDKFDIQNLLGATNKAPRWAIAVKYPAEEKATKLRKIIFQVGRSGAVTPVAEFESIEL 366 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + ATLHN + L D+ D ++V++AGE+IP+V+ +I R Sbjct: 367 AGTSVNRATLHNAKRLASL-----------DLHYEDTIIVRKAGEIIPEVIRVIKEFRKV 415 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA+ P CP C S+++ + N K + C A+ L+H+VS+ + NI Sbjct: 416 DAKLVQLPQNCPECNSKLILESNEAITKCI-------NYGCEAKLKGLLRHWVSKGSMNI 468 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG---FGDVSVTNLYD 540 +GLG++ ++ +E SI AD++ L+ I+++L FG+ S NL Sbjct: 469 DGLGEKIINQLV-NEGYVKSI---ADLYKLE---------IDSLLELERFGEKSANNLLI 515 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 IN+ +N + + ++ LGI H+G A+SL+ + S + N IA + + +S I Sbjct: 516 EINESKNKNWHKQLYGLGIPHIGEANAKSLSNNFNSIEEL-----NAIAKESPEKISNIY 570 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVF 654 G+ + +IV+++ + N ++ L LKE S + N S+ + K V Sbjct: 571 G--FGNEMKDSIVKWFDDSNNQTLIKELKAIGFSLKESLDS--NYNSNQSNVFDGKSFVL 626 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL + R +A+E + G VS+ +S+KTD ++ G+ GSKL KAQ+LGVKI+NE + Sbjct: 627 TGTLDSLTRDEAKELIESAGGKVSSSISKKTDFLVSGEKAGSKLNKAQELGVKIINENEL 686 Query: 715 LFLL 718 LL Sbjct: 687 KLLL 690 >gi|294631529|ref|ZP_06710089.1| DNA ligase, NAD-dependent [Streptomyces sp. e14] gi|292834862|gb|EFF93211.1| DNA ligase, NAD-dependent [Streptomyces sp. e14] Length = 732 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 239/749 (31%), Positives = 376/749 (50%), Gaps = 90/749 (12%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR+E + L +++ H YY P+I D+++D L R +A+ +P+L P+ P Sbjct: 4 EAREEHARLAEQVEEHRFRYYVKDAPVISDADFDRLLRSLEALEERYPEL---RTPDSPT 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G V H LSL+ +N EDL ++ RI R + + F E K+D Sbjct: 61 QKVAGSYETEFTAVEHRERMLSLDNTFNDEDLAAWVDRIAR---ELGEQEYHFLCELKVD 117 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G+ AA RGDG +GED++ +R I IP R+ +P+++E+RGEVY Sbjct: 118 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLNGDKVPDLVEIRGEVYFP 177 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 F LN ++A G KP+ANPRNAA+G LR+ +P TR L+ VHG+G A Sbjct: 178 MAGFEELNARLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIG------ALE 231 Query: 254 QYEMLQKMR-------CLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLV 303 YE L ++ G P + R + GI ++YY E R ++ ++IDG+V Sbjct: 232 GYEGLTRLSEAYDLLSTWGLPTSPHNRVVDGLDGIRDFIAYYGEH---RHSVEHEIDGVV 288 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+DE LQ +LG AR+PRW I++K+A ++ +T+LL+I + +GRTG +TP A++EPV + Sbjct: 289 VKLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLLNIRVGVGRTGRVTPYAQVEPVTV 348 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ + ATLHN+D +K + + +GD V++++AG+VIP+++ + + R Sbjct: 349 AGSEVEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDG 397 Query: 424 DAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + F P CP C + L P K G + RC C AQ ERL + R A + Sbjct: 398 SEREFVMPGECPECGT----PLRPMKEGDV--DLRCPNARTCPAQLRERLFYLAGRKALD 451 Query: 483 IEGLGKQQLDFFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTST 521 IE G K +PA +R D+F L +R +T Sbjct: 452 IEHFGYVAAAALTKPLEPAEPPLRDEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPKTGE 511 Query: 522 TKIENIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577 KI + G + + ++I + L R + L IRHVG A +LA+ + S Sbjct: 512 EKIATVFANQQGEPKKNALAMLENIAAAKQRPLARVLTGLSIRHVGPVAAEALAREFRSI 571 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 Q +A+ VG IIA ++ E++ + + ++++ + Sbjct: 572 DRIEQASEEELANTEG----------VGQIIAASLKEWFAEEWH----QEIIRKWRAAGV 617 Query: 638 RHEKNVSSE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 R E+ E +E +V TGTL+ R A+ + GA V+ +S+KT ++VG Sbjct: 618 RMEEEGPGEDEGPRPLEGLTVVVTGTLEHFTRDGAKAALQSRGAKVTGSVSKKTSFVVVG 677 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 DNPGSK +KA QL V +++E F LL Q Sbjct: 678 DNPGSKYDKAMQLKVPVLDETGFGVLLDQ 706 >gi|242309547|ref|ZP_04808702.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter pullorum MIT 98-5489] gi|239524118|gb|EEQ63984.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter pullorum MIT 98-5489] Length = 648 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 235/689 (34%), Positives = 374/689 (54%), Gaps = 63/689 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPD-LARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY PI D EYD L + P+ +A+ + P ++G + S K H Sbjct: 20 YYILDDPIASDEEYDTLYHQIKEFEAKNPNQIAK----DSPTQRVGDNILESFSKSEHIE 75 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 SLE I++ ++L+++I R+ + ++ FT++PK DG + + YE GK A Sbjct: 76 RMWSLEDIFDTQELQEWINRVSK------GENLLFTIDPKFDGASLNLLYENGKLQKATT 129 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GE+V+ + I +IP LS+ + IE+RGE I+KNDF LN E + G + Sbjct: 130 RGDGFIGENVTQNAKTIQSIP--LSIPYTDRIEIRGECVIAKNDFERLNQERLENGESLF 187 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAA+G LR+L+ + IT R L F G+G + I +E++QK+R GF + Sbjct: 188 ANPRNAAAGSLRQLD-SKITAKRKLQFIPWGVGFCT-IEENSFFELMQKIRSFGFLTSPF 245 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + I Y + S R + P +DG+V ++D +LQK LG ++PR+ ++KF Sbjct: 246 SKLCKNLQEIEESYQNLISKRDSYPIMLDGMVIRIDSIALQKNLGFTIKAPRFACAYKFP 305 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + ++LDI +Q+GRTG++TPVA LEPV I GA + ATLHN D I+ Sbjct: 306 AIEKKAKILDITLQVGRTGVVTPVAILEPVMIEGAKVARATLHNFDEIR----------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DI + D V++ R+G+VIPK++ + + R + P+ CPIC S ++ + K Sbjct: 355 KKDILINDSVILIRSGDVIPKIIKSLPSLRDGTQKKCEIPTHCPICGSELLIE-----EK 409 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ L+C A+ L HF+S+ A NI+GLGK+ +D F+ I DIF Sbjct: 410 LIKCQ----NLSCKARLKNSLIHFISKKALNIDGLGKRIIDLLFERG----KITKIEDIF 461 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 +LQ +E + GF D + N+ ++I + + I L RFI +LGI H+G ++ LA Sbjct: 462 SLQYED------LEGLEGFKDKKIHNILNAIKESKGIDLWRFINALGIEHIGEGASKKLA 515 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + F Q+ +D+++L G+ +A ++VEF N ++ LL Sbjct: 516 NTF--GLEFCQK-------GFEDFITL---DGFGEEMANSLVEFCH--INQERIKNLLNI 561 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++P + ++ ++ + K V TGTL + +R QE + LGA VS+ +S+KTD ++ G Sbjct: 562 LTPKTTQTPQSTTN-LSGKTFVITGTLSQ-KRESYQEILESLGAKVSSSVSKKTDFLLCG 619 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GSKL KAQ+LGVKI++E+ F L+++ Sbjct: 620 EEAGSKLTKAQELGVKILDEKDFWELIKE 648 >gi|229493359|ref|ZP_04387148.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121] gi|229319675|gb|EEN85507.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121] Length = 700 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 221/709 (31%), Positives = 357/709 (50%), Gaps = 42/709 (5%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR++ + L +E+ H YY P+I D +D L + +A+ +PDL P+ P Sbjct: 14 EAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQYPDL---RTPDSPT 70 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +GG V H LSL+ +++ +LR +I ++ +++ + + E KID Sbjct: 71 QLVGGGFATDFTSVDHLERMLSLDNVFDESELRAWIAKV----EQETGPELHYLCEVKID 126 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEV 191 G + + YE GK V AA RGDG +GE V+ I IP L+ IP ++EVRGEV Sbjct: 127 GVALNLVYENGKLVRAATRGDGRTGELVTLNALTINDIPERLTATDEYPIPSLLEVRGEV 186 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 + DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HG G+ Sbjct: 187 FFRLEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFGRMEGFE 246 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 QY+ + G PV+ + +V R + ++IDGLV KVDE S Sbjct: 247 PASQYDAYVALAAWGLPVSTHTSRVVGADAVVEKMKYWGEHRHDVEHEIDGLVVKVDEMS 306 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L ++LG +R+PRW I++K+ ++ +T+LLDI + +GRTG +TP A +EPV + G+ ++ Sbjct: 307 LHRRLGTTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVAGSTVSL 366 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN +K R G + +GD V++++AG+VIP+V+ + + R + F Sbjct: 367 ATLHNGSEVK---------RKG--VLIGDTVVLRKAGDVIPEVLGPVADVRDGTEREFVM 415 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + + K G + RC C AQ ER+ H R AF+IE LG + Sbjct: 416 PTHCPECGTLLA---PAKEGDVDV--RCPNQQYCPAQLRERVFHVSGRGAFDIEVLGYEA 470 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +++ I D+F+L + G + L +++ ++ L Sbjct: 471 ATGLLEAK----VIGDEGDLFSLDAEKLIEVPIFRTNAGSLSANGKRLLANLDSAKDKPL 526 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IRHVG AR+LA + S Q + + L V VG IA Sbjct: 527 WRVLVALSIRHVGPTAARALAGEFGSLQRIREASVD----------ELAAVDGVGSTIAA 576 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 A+VE++ + V+ + ++ +E +V TG+L+ R +A+E + Sbjct: 577 AVVEWFSVDWHQQIVDKWASAGVRMEDERDDSIPRNLEGLSIVVTGSLETYSRDQAKEAI 636 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G + +S+KT ++VG+ PGSK +KA +LGV +++E+ F LL+ Sbjct: 637 LVRGGKAAGSVSKKTAFVVVGEAPGSKHDKAVELGVPVLDEDGFRRLLE 685 >gi|145224827|ref|YP_001135505.1| NAD-dependent DNA ligase LigA [Mycobacterium gilvum PYR-GCK] gi|190359265|sp|A4TDZ8|DNLJ_MYCGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145217313|gb|ABP46717.1| DNA ligase, NAD-dependent [Mycobacterium gilvum PYR-GCK] Length = 712 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 233/720 (32%), Positives = 362/720 (50%), Gaps = 62/720 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ L E+ H YY PII D+E+D L RR A+ +P+L P+ P Sbjct: 26 RRSWQELADEVREHQFRYYIRDAPIITDAEFDQLLRRLQALEDEYPEL---RTPDSPTQL 82 Query: 78 IGGEMNLSLFKVT-HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +GG + F H LSL+ ++++E+L + RI + + + E KIDG Sbjct: 83 VGGAGFATDFTAAEHLERMLSLDNVFDLEELAAWAARI----RTEIGADAQYLCELKIDG 138 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVY 192 + + Y G+ AA RGDG +GEDV+ R I IP LS +P ++EVRGEV+ Sbjct: 139 VALALVYRDGRLERAATRGDGRTGEDVTLNARTIEDIPERLSGTNEFPLPTVVEVRGEVF 198 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN ++A G+ P+ANPRN+A+G LR+ NP R L HGLG Sbjct: 199 FRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGLGHVESSGG 258 Query: 252 K---GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYK 305 ++ + ++ G PV++ Q + ++Y+ E R + ++IDG+V K Sbjct: 259 SPFPTLHDAYRALKAWGLPVSDHTAQVTGLDAVTERIAYWGEH---RHDVEHEIDGVVVK 315 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD +LQ++LG +R+PRW +++K+ ++A TRLLDI + +GRTG +TP A +EPV + G Sbjct: 316 VDAVALQRRLGATSRAPRWAVAYKYPPEEAQTRLLDIRVNVGRTGRVTPFAYMEPVKVAG 375 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + + ATLHN +K R G + +GD V++++AG+VIP+V+ +V+ R Sbjct: 376 STVGLATLHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGSE 424 Query: 426 QPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + F FP+ CP C S +L P K G A RC +C AQ ER+ H R AF+IE Sbjct: 425 REFVFPTHCPECGS----ELAPAKEGD--ADIRCPNTRSCPAQLRERVFHVAGRGAFDIE 478 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQR----RQQTSTTKIENILGFGDVSVTNLYD 540 GLG + + A I D+F L R + TTK + G + NL Sbjct: 479 GLGYEAATALLQ----AGVIADEGDLFGLTADDLLRTELFTTKAGELSANGKRLLANL-- 532 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 K + L R + +L IRHVG AR+LA + S + +A Sbjct: 533 --GKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLEAIETASEEQLAGTEG------- 583 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VG IA A+++++ + V+ + + ++ +E +V TG+L Sbjct: 584 ---VGPTIAAAVIDWFTVDWHRAIVDKWREAGVRMADERDASIERTLEGLSIVVTGSLAG 640 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R +A+E + G + +S+KT ++ GD PGSK +KA +LGV +++E+ F LL + Sbjct: 641 FSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAIELGVPVLDEDGFRRLLAE 700 >gi|300783591|ref|YP_003763882.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32] gi|299793105|gb|ADJ43480.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32] Length = 726 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 226/712 (31%), Positives = 357/712 (50%), Gaps = 51/712 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ S+L +E+ H YY PII D ++D L + A P L P P + Sbjct: 31 RERHSALAEELRDHQFRYYVLDSPIISDGQFDELLGELQRLEDAHPALV---TPESPTQR 87 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + H LSL+ ++ ++ ++ R+ +K+ F E KIDG Sbjct: 88 VGGTFSTEFTAHDHLERMLSLDNVFAEDEFLAWVERV-----EKEVGRTEFLAELKIDGL 142 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193 I + YE G A RGDG +GEDV+ +R + +P+ L+ +P ++EVRGEV+ Sbjct: 143 AINLLYENGHLTRALTRGDGRTGEDVTLNVRTLDQVPQTLTGTDQFPVPALVEVRGEVFF 202 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFA 251 DFL LN +M+ G+ PYANPRN A+G LR+ +P ITR L HGLGK + Sbjct: 203 RVEDFLELNAKMVEAGKPPYANPRNTAAGSLRQKDPK-ITRERRLRLICHGLGKRAGFEP 261 Query: 252 KGQYEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q E + G PV+ + A+ ++Y+ E R ++IDG+V KVD+ Sbjct: 262 QRQSEAYDALAAWGLPVSPHSKVLTSADELTAHIAYWGEH---RHDAEHEIDGVVIKVDQ 318 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG +R+PRW I++K+ ++A T LLDI + +GRTG +TP A EPV + G+ + Sbjct: 319 VALQRRLGTTSRAPRWAIAYKYPPEEAITTLLDIQVGVGRTGRVTPFAVTEPVTVAGSTV 378 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN++ +K R G + +GDR+++++AG+VIP+V+ +V+ R D + F Sbjct: 379 SRATLHNQEEVK---------RKG--VLIGDRIVIRKAGDVIPEVLGPVVDARTGDEREF 427 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C + + + K + RC C AQ ERL H R AF+IE LG Sbjct: 428 VMPTHCPECGTELA--YQKEGDKDI---RCPNTRFCPAQLRERLFHLAGRGAFDIEVLGY 482 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + A + D+F L G + L +++ ++ Sbjct: 483 EAAVALLD----ARVVADEGDVFDLNEDSLAEVELFRTKAGELSANARKLLSNLDAAKDR 538 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L + + +L IRHVG A++LA+ + S + Q L V VG I Sbjct: 539 PLWKVLVALSIRHVGPTAAQALAREFGSIERIEQATEE----------ELSAVDGVGPTI 588 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A A E++ + VE + ++++ +E +V TG+L R +A+E Sbjct: 589 AHATQEWFDVAWHREIVEKWRRAGVRMEEARDESIPRHLEGLSIVVTGSLDGFSRDEAKE 648 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 V G + +S+KT ++VGD+PGSK +KA QL V +++E F LL+Q Sbjct: 649 VVMARGGKAAGSVSKKTAFVVVGDSPGSKYDKAVQLKVPVLDEAGFRVLLEQ 700 >gi|315638276|ref|ZP_07893457.1| NAD-dependent DNA ligase LigA [Campylobacter upsaliensis JV21] gi|315481623|gb|EFU72246.1| NAD-dependent DNA ligase LigA [Campylobacter upsaliensis JV21] Length = 644 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 234/684 (34%), Positives = 364/684 (53%), Gaps = 66/684 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY+ +P+ D EYD L R A P L P+ P KI + K H Sbjct: 18 YYEEDEPLASDEEYDRLIREIKAFEKENPSLI---SPDSPTQKIAPTIQSKFKKSRH--- 71 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 L K+W++ED+ F R W K+ F +EPK DG + + Y+KG+ V AA R Sbjct: 72 ---LSKMWSMEDV--FDEEELRAWAKRARCEDGFFIEPKFDGASLNLLYQKGRLVSAATR 126 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GEDV+ ++ I IP+++ N IE+RGEV I K DF LN++ +A Sbjct: 127 GDGEIGEDVTLNVKEIANIPQII--NYEGEIEIRGEVVILKEDFERLNEKRAKENLSLFA 184 Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 NPRNAASG LR+L+ T IT R L F+ G+GK + FAK E++ +R LGF + V Sbjct: 185 NPRNAASGSLRQLD-TQITKERNLKFYPWGVGKHTLSFAK-HSELMCFVRELGFLKDEFV 242 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 R ++++Y E+ S+R P +DG+V +VD+ +L K+LG + P++M + KF Sbjct: 243 RVCKNLDEVLTHYKELLSLRDLKPMMMDGMVVRVDDIALCKELGYTIKYPKFMAAFKFPA 302 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + STRL+ + +Q+GR+G++TPVA LEPVN+ G ++ +A+LHN D I+ L Sbjct: 303 LEKSTRLVGVSLQVGRSGVITPVAVLEPVNLDGVVVKSASLHNFDEIERL---------- 352 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 ++R+ D V V R+G+VIPK+ + + R +A P CP+C+S ++ + G L Sbjct: 353 -NLRLNDFVSVIRSGDVIPKITKVFKDRRGENALKIERPKLCPVCESELLDE-----GAL 406 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 + L C A+ + + +FVS+ NI+GLG+ ++ ++ + I IF Sbjct: 407 IKCQ----NLDCKARLVNSIIYFVSKKCLNIDGLGESIVELLYEKQ----KITSIESIFR 458 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L+ + E + GF + +T L ++I + L RFI +LGI H+G A+ LA Sbjct: 459 LKFQD------FEGLEGFKEKKITKLLNAIESAKICPLYRFITALGIEHIGEVAAKKLAL 512 Query: 573 YYLS--YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + YQ +E N+ G+ +A ++VEF + N +EA K Sbjct: 513 SFDKEWYQKSFEEYKNLEGF--------------GEQMALSLVEFTR--VNQARIEAFYK 556 Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 ++ + E + S K V TGTL + R + + + +LG VS+ +S+KTD ++ Sbjct: 557 LLNLENEKQEISTQSPFYEKTFVITGTLSR-PRDEFKALIERLGGKVSSSVSKKTDFVLF 615 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQF 714 G+ GSKLEKA++LGVK ++E QF Sbjct: 616 GEEAGSKLEKARELGVKCIDEIQF 639 >gi|300743918|ref|ZP_07072938.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567] gi|300380279|gb|EFJ76842.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567] Length = 740 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 237/733 (32%), Positives = 384/733 (52%), Gaps = 65/733 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R E + L I YYQ P + D+EYD L RR + I +P L ++ P + Sbjct: 30 RAEYAELTDTIRAARHDYYQADAPTLSDAEYDRLYRRLEQIEAQYPALIANDSPT---QE 86 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE++ + VTH + SLE ++++E+LR ++T+ + + + E KIDG Sbjct: 87 VGGEVSEAFSPVTHLVRMYSLEDVFSLEELRAWLTKAEENTRLLTGTAPQWLTELKIDGL 146 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKN 196 + + Y G V AA RGDG +GEDV+ +R I +IP+ L+ N P +EVRGEV+IS Sbjct: 147 AVNLLYRNGVLVRAATRGDGTTGEDVTHNVRTIASIPQKLAGENHPAELEVRGEVFISSA 206 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 DF LN++M++ G+ P+ANPRNAA+G LR+ + R L+ +VHG+G + + QY Sbjct: 207 DFKKLNEKMVSEGKNPFANPRNAAAGSLRQKDSAVTAERPLSMYVHGVGSRTGLDVNSQY 266 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + +++ G P + + + I+ Y E R +L ++IDG+V KV++F Q QL Sbjct: 267 QTYEQLAAWGLPTSPYSKLFTSVDDILRYIAEYGEKRHSLVHEIDGIVIKVNDFVAQTQL 326 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R PRW +++K+ ++ +T+LLDI + +GRTG +TP +EPV + G+ + ATLHN Sbjct: 327 GYTSRVPRWAVAYKYPPEEVNTKLLDIRVDVGRTGRVTPYGVMEPVLVSGSTVERATLHN 386 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 +D +K + + +GD V++++AG+VIP++V +V R+ + F P+ CP Sbjct: 387 QDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVALRNGHEREFVMPTECP 435 Query: 436 ICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 C + L P K G + RC +C AQ ER+ + SR AF+IE LG + Sbjct: 436 SCGT----TLAPGKEGDV--DMRCPNYRSCPAQLTERIYYAASRGAFDIEALGFEAAKAL 489 Query: 495 FKSEDP--------AFSIRIPA-DIFTLQRRQQ-----TSTTKIENILGF---------- 530 +P AF + A D+ ++ R++ T K E + F Sbjct: 490 TAPAEPEQPPLTSEAFLFDLTAEDLRDVKIRREKKVKGVGTGKFELVPYFYTKPTKAKPE 549 Query: 531 --GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 + NL+ + K ++ L R + +L +RHVG AR+LA + S AQ + + Sbjct: 550 PVPTKNTQNLFVELEKAKSQPLWRVLVALSLRHVGPTAARALATEFGSMDAIAQADRDRL 609 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSE- 646 A V VG +IA +I+E++ + E L + + E++ S E Sbjct: 610 AA----------VDGVGGVIADSIIEWFATDWH---REVLARWADAGVRMEDERDASIER 656 Query: 647 -IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 +E +V TGTL R A+E + G S +S+KT ++ G + GSKL+KA+ LG Sbjct: 657 TLEGVTVVVTGTLVNYSRDSAKEAIIVRGGRASGSVSKKTHFVVAGASAGSKLDKAEALG 716 Query: 706 VKIMNEEQFLFLL 718 + +++E+ F LL Sbjct: 717 IPVLDEDGFTKLL 729 >gi|226305867|ref|YP_002765827.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4] gi|254781402|sp|C0ZXK3|DNLJ_RHOE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226184984|dbj|BAH33088.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4] Length = 700 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 221/709 (31%), Positives = 357/709 (50%), Gaps = 42/709 (5%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR++ + L +E+ H YY P+I D +D L + +A+ +PDL P+ P Sbjct: 14 EAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQYPDL---RTPDSPT 70 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +GG V H LSL+ +++ +LR +I ++ +++ + + E KID Sbjct: 71 QLVGGGFATDFTSVDHLERMLSLDNVFDESELRGWIAKV----EQETGPELHYLCEVKID 126 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEV 191 G + + YE GK V AA RGDG +GE V+ I IP L+ IP ++EVRGEV Sbjct: 127 GVALNLVYENGKLVRAATRGDGRTGELVTLNALTINDIPERLTATDEFPIPTLLEVRGEV 186 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 + DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HG G+ Sbjct: 187 FFRLEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFGRMEGFE 246 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 QY+ + G PV+ + +V R + ++IDGLV KVDE S Sbjct: 247 PASQYDAYVALAAWGLPVSTHTSRVVGADAVVEKMKYWGEHRHDVEHEIDGLVVKVDEMS 306 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L ++LG +R+PRW I++K+ ++ +T+LLDI + +GRTG +TP A +EPV + G+ ++ Sbjct: 307 LHRRLGTTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVAGSTVSL 366 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN +K R G + +GD V++++AG+VIP+V+ + + R + F Sbjct: 367 ATLHNGSEVK---------RKG--VLIGDTVVLRKAGDVIPEVLGPVADVRDGTEREFVM 415 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + + K G + RC C AQ ER+ H R AF+IE LG + Sbjct: 416 PTHCPECGTLLA---PAKEGDVDV--RCPNQQHCPAQLRERVFHVSGRGAFDIEVLGYEA 470 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +++ I D+F+L + G + L +++ ++ L Sbjct: 471 ATGLLEAK----VIGDEGDLFSLDAEKLIEVPIFRTNAGALSANGKRLLANLDSAKDKPL 526 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IRHVG AR+LA + S Q + + L V VG IA Sbjct: 527 WRVLVALSIRHVGPTAARALAGEFGSLQRIREASVD----------ELAAVDGVGSTIAA 576 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 A+VE++ + V+ + ++ +E +V TG+L+ R +A+E + Sbjct: 577 AVVEWFSVDWHQQIVDKWASAGVRMEDERDDSIPRNLEGLSIVVTGSLETYSRDQAKEAI 636 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G + +S+KT ++VG+ PGSK +KA +LGV +++E+ F LL+ Sbjct: 637 LVRGGKAAGSVSKKTAFVVVGEAPGSKHDKAVELGVPVLDEDGFRRLLE 685 >gi|302554316|ref|ZP_07306658.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM 40736] gi|302471934|gb|EFL35027.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM 40736] Length = 731 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 230/742 (30%), Positives = 374/742 (50%), Gaps = 76/742 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR++ + L ++I H YY P++ D+E+D L R +A+ +P+L P+ P Sbjct: 15 EAREKHARLAEQIEEHRFRYYVKDAPVVSDAEFDQLLRSLEALEDEYPEL---RTPDSPT 71 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G V H LSL+ +N E+L + RI R ++D F E K+D Sbjct: 72 QKVAGAYATEFTAVEHRERMLSLDNTFNEEELAAWAERIARELGEQD---YHFLCELKVD 128 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G+ AA RGDG +GED++ +R I IP R+ +P+++E+RGEVY Sbjct: 129 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPERLKGDRVPDLVEIRGEVYFP 188 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK----TSEI 249 F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G T Sbjct: 189 MEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGALEGFTGLT 248 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Y++L G P + R + G++ + R ++ ++IDG+V K+DE Sbjct: 249 RLSQAYDLLG---TWGLPTSRHNRVVDGLEGMLEFIAHYGENRHSVEHEIDGVVVKLDEI 305 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ +LG +R+PRW I++K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + Sbjct: 306 PLQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVE 365 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+D +K + + +GD V++++AG+VIP+++ + + R + F Sbjct: 366 FATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFV 414 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487 P+ CP C + +R + L RC C AQ ERL + R A +IE G Sbjct: 415 MPAECPECGT-ALRPMKEGDVDL----RCPNARTCPAQLRERLFYLAGRKALDIEHFGYV 469 Query: 488 -KQQLDFFFKSEDPA-------FSIRI----PADIFTL-------QRRQQTSTTKIENIL 528 L + +DP F + I P + L +R +T K+ I Sbjct: 470 AAAALTAPLEPKDPPLVDEGDLFDLTIDQLLPIKAYVLDPDSGLPKRDPKTGEEKVATIF 529 Query: 529 ----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 G + + ++I + L R I SL IRHVG A +LA+ + S + Q Sbjct: 530 ANQEGNPRKNALAMLENIAAAKERPLARIITSLSIRHVGPVAAEALAREFRSIERIDQAT 589 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 +A VG IA ++ +++ + ++++ + R E + Sbjct: 590 EEELAVTEG----------VGPTIAASLKQWFAEDWH----REIIRKWKAAGVRMEAEST 635 Query: 645 SE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 E +E +V TGTL+ R A+E + GA V+ +S+KT ++VGD+PGSK Sbjct: 636 GEDEGPRPLEGLTVVVTGTLEHFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDSPGSKY 695 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 +KA QL V ++NE+ F LL+Q Sbjct: 696 DKAMQLKVPVLNEDGFGVLLEQ 717 >gi|220912112|ref|YP_002487421.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6] gi|254778146|sp|B8HFJ3|DNLJ1_ARTCA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|219858990|gb|ACL39332.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6] Length = 770 Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 226/748 (30%), Positives = 377/748 (50%), Gaps = 68/748 (9%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 R+ IP +A+ R+E +L I + YYQ P++ D+E+D L RR + I P Sbjct: 21 RESIPSDAI-----REEYENLSDLIRKYRFAYYQDDAPLVSDAEFDTLFRRLEEIEALHP 75 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 +L ++ P ++GGE + + V H SLE +++IE+L ++ R K D Sbjct: 76 ELVANDSPT---QEVGGEASAAFAAVEHLQRMYSLEDVFSIEELEAWLNRAEASIAKLGD 132 Query: 124 NSI--FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LN 180 + + E KIDG + + Y GK V AA RGDG +GED++ + I IP+ LS Sbjct: 133 GTAQAAWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIKEIPQQLSGEG 192 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239 P +EVRGEV+I F N+ +I G+ P ANPRNAA+G LR+ +P + R L F Sbjct: 193 YPSEVEVRGEVFIPSKAFAEFNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRPLKMF 252 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 VHG+G + A+ Q E ++ G PV+ ++ + ++ R L ++I Sbjct: 253 VHGIGAREGLEARSQSETYALLKEWGLPVSPYFEVLEARADVLGFISKYGEQRHKLLHEI 312 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KVD+F+ Q+ LG R PRW +++K+ ++ T+LLDI + +GRTG +TP +E Sbjct: 313 DGIVIKVDDFATQRALGYTTRVPRWAVAYKYPPEEVHTKLLDIQVNVGRTGRVTPFGMME 372 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV- 418 PV + G+ + ATLHN+D +K + +++GD V++++AG+VIP++V ++ Sbjct: 373 PVKVAGSTVEMATLHNQDVVK-----------AKGVKIGDIVVLRKAGDVIPEIVGPVLA 421 Query: 419 --NERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHF 475 +++ P + F P+ CP C + L P K G + RC G +C +Q ER+ H Sbjct: 422 LRDQQDPPVRDFVMPTECPACGT----PLAPAKEGDVDI--RCPNGKSCPSQLRERVFHL 475 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTL-------------QRRQQTST 521 R F+IE LG + + +P + A +F L +R + +T Sbjct: 476 AGRGGFDIEALGWEAAIALTQPAEPDVPPLTSEAALFDLTREDLADVKIRREKRSKGVAT 535 Query: 522 TKIENILGF-----------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + E + F S L+ ++K ++ L R + +L IRHVG +R+L Sbjct: 536 GEYELVPYFYSKGTAKSPSKPTASTEKLFKELDKAKSQPLWRVLVALSIRHVGPRASRAL 595 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 A+ + + +AH V VG IA A+ E++ + V+ Sbjct: 596 AQAFGTMDGIRAASEEELAH----------VDGVGPTIAAALKEWFAEDWHREIVDRWAA 645 Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 +++ +E +V TG+L R +A+E + G S +S+ T ++ Sbjct: 646 AGVRMEDERDESTPRTLEGLTVVVTGSLPNFSRDEAKEAILVRGGKASGSVSKNTSYVVA 705 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G++ G+KL+KA+QLG+++++E+ F LL Sbjct: 706 GESAGTKLDKAEQLGIRVLDEDGFRLLL 733 >gi|315445158|ref|YP_004078037.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1] gi|315263461|gb|ADU00203.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1] Length = 701 Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 233/720 (32%), Positives = 362/720 (50%), Gaps = 62/720 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ L E+ H YY PII D+E+D L RR A+ +P+L P+ P Sbjct: 15 RRSWQELADEVREHQFRYYIRDAPIITDAEFDQLLRRLQALEDEYPEL---RTPDSPTQL 71 Query: 78 IGGEMNLSLFKVT-HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +GG + F H LSL+ ++++E+L + RI + + + E KIDG Sbjct: 72 VGGAGFATDFTAAEHLERMLSLDNVFDLEELAAWAARI----RTEIGADAQYLCELKIDG 127 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVY 192 + + Y G+ AA RGDG +GEDV+ R I IP LS +P ++EVRGEV+ Sbjct: 128 VALALVYRDGRLERAATRGDGRTGEDVTLNARTIEDIPERLSGTNEFPLPTVLEVRGEVF 187 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN ++A G+ P+ANPRN+A+G LR+ NP R L HGLG Sbjct: 188 FRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGLGHVESSGG 247 Query: 252 K---GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYK 305 ++ + ++ G PV++ Q + ++Y+ E R + ++IDG+V K Sbjct: 248 SPFPTLHDAYRALKAWGLPVSDHTAQVTGLDAVTERIAYWGEH---RHDVEHEIDGVVVK 304 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD +LQ++LG +R+PRW +++K+ ++A TRLLDI + +GRTG +TP A +EPV + G Sbjct: 305 VDAVALQRRLGATSRAPRWAVAYKYPPEEAQTRLLDIRVNVGRTGRVTPFAYMEPVKVAG 364 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + + ATLHN +K R G + +GD V++++AG+VIP+V+ +V+ R Sbjct: 365 STVGLATLHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGSE 413 Query: 426 QPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + F FP+ CP C S +L P K G A RC +C AQ ER+ H R AF+IE Sbjct: 414 REFVFPTHCPECGS----ELAPAKEGD--ADIRCPNTRSCPAQLRERVFHVAGRGAFDIE 467 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQR----RQQTSTTKIENILGFGDVSVTNLYD 540 GLG + +S I D+F L R + TTK + G + NL Sbjct: 468 GLGYEAATALLQS----GVIADEGDLFGLTADDLLRTELFTTKAGELSANGKRLLANL-- 521 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 K + L R + +L IRHVG AR+LA + S + +A Sbjct: 522 --GKAKAQPLWRVLVALSIRHVGPTAARALATEFGSLEAIETASEEQLAGTEG------- 572 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VG IA A+++++ + V+ + + ++ +E +V TG+L Sbjct: 573 ---VGPTIAAAVIDWFTVDWHRAIVDKWREAGVRMADERDASIERTLEGLSIVVTGSLAG 629 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R +A+E + G + +S+KT ++ GD PGSK +KA +LGV +++E+ F LL + Sbjct: 630 FSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDAPGSKYDKAIELGVPVLDEDGFRRLLAE 689 >gi|262047040|ref|ZP_06019999.1| DNA ligase, NAD-dependent [Lactobacillus crispatus MV-3A-US] gi|293381897|ref|ZP_06627865.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 214-1] gi|260572617|gb|EEX29178.1| DNA ligase, NAD-dependent [Lactobacillus crispatus MV-3A-US] gi|290921544|gb|EFD98578.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 214-1] Length = 668 Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 220/710 (30%), Positives = 378/710 (53%), Gaps = 55/710 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++++A+KE +SL ++++ + YY P + D+ YD R + FP++ P Sbjct: 4 ITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVT---P 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG+++ KV H IP LS+ +++ +L+ F R+ QK + + + +E Sbjct: 61 DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKAELKDFDQRM----QKLVGHPVEYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE GK V A+ RG+G+ GEDV+A + I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANAKYISDIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+ K F LN E G +ANPRNAA+G LR+L+P R L+ F++ E Sbjct: 175 YMGKEAFAKLNAEREEQGLVVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEEI 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q++ +QKM LGF N R+ T + ++ +E + R++L Y IDG+V K+D+ Sbjct: 235 T-SQHQAIQKMHDLGFHTNETGRKLKTLDEVFAFIDEYTAKRNSLTYGIDGIVLKIDDLG 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 294 IEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVAR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN DY+ + +R+GD V + +AG++IP++ ++++ +R D+ + Sbjct: 354 ASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSVAYQI 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C ++V + A RC +C AQ E + HF SR A NI GLG + Sbjct: 403 PTTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPKI 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++D ++ AD++ L + + + F + S+ NL +++ + S+ Sbjct: 456 VKQLI-AKDLVHNV---ADLYHL------TADDLAQLDHFKEKSINNLLTALDNSKQNSV 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E I LGI HVGA+ AR + AQ+ N+ + D + + +G IA+ Sbjct: 506 ELLITGLGIDHVGAKAARLI----------AQKFKNLAKIMSLDVQEIASIDTIGMTIAE 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-----NKKLVFTGTLQKIQRHK 665 ++ ++ P ++ L+E ++ + +EIE +K +V TG L+ R + Sbjct: 556 SMTTYFAQPEAQKVIDE-LRESGLNMDYLGADEPAEIEDNPFKDKTVVLTGKLEHYTRSE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + + LGA V+ +S KTD +I G + GSK KAQ LGV ++ EE+ + Sbjct: 615 FTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYTKAQTLGVPLLTEEEAI 664 >gi|134102614|ref|YP_001108275.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL 2338] gi|291004701|ref|ZP_06562674.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL 2338] gi|166216238|sp|A4FMS5|DNLJ_SACEN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|133915237|emb|CAM05350.1| DNA ligase, NAD-dependent [Saccharopolyspora erythraea NRRL 2338] Length = 727 Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 225/715 (31%), Positives = 361/715 (50%), Gaps = 56/715 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ + L +++ H YY P I D E+D L + P L DP+ P Sbjct: 44 RERYADLVEQVRAHQFRYYVLDSPTISDGEFDELFTELQTLESDHPAL---RDPDSPTQV 100 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + V H LSL+ ++ ++LR ++ R+ +++ +S + E KIDG Sbjct: 101 VGGTFSTDFTAVDHLERMLSLDNAFDPDELRAWVERV----EREVGSSAHYLCELKIDGL 156 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 I + Y GK A RGDG +GEDV+ +R + +P L+ +P ++E+RGEV+ Sbjct: 157 AINLLYRDGKLERALTRGDGRTGEDVTLNVRTMDDVPDQLTGTDEYPVPALVEIRGEVFF 216 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 ++F LN ++ G+ P+ANPRN+A+G LR+ +P +R L HGLGK K Sbjct: 217 RVDEFAQLNASLVEAGKPPFANPRNSAAGSLRQKDPRVTKSRPLRMICHGLGKREGFEPK 276 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E +R G V+ + +T ++ + + R++ ++IDG+V KVDE SLQ Sbjct: 277 QQSESYAALRAWGLRVSPHTKVLSTVDEVLEHIDYWGKHRNSAEHEIDGVVVKVDEVSLQ 336 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +R+PRW I++K+ +QA+TRLLDI + +GRTG +TP A +EPV + G+ + AT Sbjct: 337 RRLGATSRAPRWSIAYKYPPEQATTRLLDIQVAVGRTGRVTPYAVMEPVKVAGSTVARAT 396 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D ++ + + +GDRV++++AG+VIP+V+ +V+ R + F P+ Sbjct: 397 LHNADQVR-----------HKGVLIGDRVVIRKAGDVIPEVLGPVVDVRDGSEREFVMPT 445 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + + + K G + RC C Q+ ERL R AF+IE LG + + Sbjct: 446 ECPDCGTALA---HQKEGDV--DLRCPNSHNCIGQRRERLFQLAGRKAFDIEVLGYEGVS 500 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 A + D+F L TT G V+ L ++ + L R Sbjct: 501 ALLS----AGVVFDEGDLFDLNEEALLKTTLFRTDDGSLSVNGGKLLANLESAKQQPLWR 556 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + +L IRHVG AR LA+ + S + +A VG IA A+ Sbjct: 557 VLVALSIRHVGPIAARVLAREFGSLDRIQEASEEELAAGEG----------VGPTIATAV 606 Query: 613 VEFYQNP--RNIC-----AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 E++ R I A + E SI RH +S +V TG+L+ R + Sbjct: 607 REWFDVDWHREIVRKWSEAGVRMADERDESIERHLTGLS-------IVVTGSLEGFSRDE 659 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+E + G + +S+KT ++VG++PGSK +KA Q+ V +++E+ F LL+Q Sbjct: 660 AKELIMARGGRAAGSVSKKTAFVVVGESPGSKYDKAVQMKVPVLDEDGFRVLLEQ 714 >gi|77414096|ref|ZP_00790264.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515] gi|77159848|gb|EAO70991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515] Length = 648 Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 231/692 (33%), Positives = 369/692 (53%), Gaps = 67/692 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DS+YD L R + P+ PN P +++GG + K H P Sbjct: 15 YYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHRVGGLVLEGFEKYQHEYP 71 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ K + + + E KIDG +++ Y G A R Sbjct: 72 LYSLQDAFSKEELIAFDKRV-----KAEFPTASYMAELKIDGLSVSLTYVNGILQVGATR 126 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG+ GE+++ ++ + IP L L+ I VRGE Y+ K F A+N E A G + +A Sbjct: 127 GDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEAINIEKRANGEQEFA 184 Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+LN + R L F++ + S + Q ++L+++ GF VN+ Sbjct: 185 NPRNAAAGTLRQLNTGIVAKRKLATFLYQ--EASPTQKETQDDVLKELESYGFSVNHHRL 242 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 +++ I + ++ R +LPYDIDG+V KV+ ++Q++LG ++PRW I++KF + Sbjct: 243 ISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIAYKFPAE 302 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 + +L +D +GRTG++TP A L PV + G ++ ATLHN DYI + Sbjct: 303 EKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEK 351 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIR+GD V+V +AG++IP V+++++++R+ + P CP C S +V + Sbjct: 352 DIRIGDTVVVYKAGDIIPAVLNVVMSKRN-QQEVMLIPKLCPSCGSELVHFEDE------ 404 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RC L C Q ERL HF SRDA NI G G ++ F A I ADI+ L Sbjct: 405 VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD----AHLIADVADIYRL 459 Query: 514 QRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 IE++L G + S T +Y +I + S E+ +F LGIRHVG++ +R L Sbjct: 460 ---------SIEDLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGLGIRHVGSKASRLL 510 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + + + + +Q IA + +G +IA+++ F++ V+ LL+ Sbjct: 511 LEEFGNLRQLSQASQESIA----------SIDGLGGVIAKSLHTFFEKEE----VDKLLE 556 Query: 631 EVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 E++ + K VS++ + L V TG L+K+ R++A+E + LGA V+ +S+KT Sbjct: 557 ELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVTGSVSKKT 616 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 D+I+ G + GSKL KAQ LG+ I +E+ L L Sbjct: 617 DLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 648 >gi|120403104|ref|YP_952933.1| NAD-dependent DNA ligase LigA [Mycobacterium vanbaalenii PYR-1] gi|166216216|sp|A1T6X7|DNLJ_MYCVP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119955922|gb|ABM12927.1| DNA ligase, NAD-dependent [Mycobacterium vanbaalenii PYR-1] Length = 707 Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 233/719 (32%), Positives = 370/719 (51%), Gaps = 62/719 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ L E+ H YY PII D+E+DA+ RR +A+ A P+L P+ P Sbjct: 26 RRQWQELADEVRDHQFRYYVRDAPIITDAEFDAMLRRLEALEEAHPEL---RTPDSPTQL 82 Query: 78 IGGEMNLSLFKVT-HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +GG + F H LSL+ ++ ++L + RI + + + E KIDG Sbjct: 83 VGGAGFATDFTAAEHLERMLSLDNVFTPDELAAWAARI----RTEIGADAQYLCELKIDG 138 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVY 192 +++ Y G+ A RGDG +GEDV+ R I +P L+ +P ++EVRGEV+ Sbjct: 139 VALSLVYRDGRLERGATRGDGRTGEDVTLNARTIEDVPEKLTGTEEFPLPSVLEVRGEVF 198 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 DF LN ++A G+ P+ANPRN+A+G LR+ NP R L HGLG + Sbjct: 199 FRIADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHGLGHIEDAAG 258 Query: 252 ---KGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYK 305 + ++ + ++ G PV+ Q + ++Y+ E R + ++IDG+V K Sbjct: 259 FPFRTLHDAYRALQAWGLPVSPHTAQVTGLDAVTERIAYWGEH---RHDVEHEIDGVVVK 315 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VDE +LQ++LG +R+PRW +++K+ ++A T+LLDI + +GRTG +TP A +EPV I G Sbjct: 316 VDEVALQRRLGATSRAPRWAVAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAYMEPVKIAG 375 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + + ATLHN +K R G + +GD V++++AG+VIP+V+ +V+ R Sbjct: 376 STVGLATLHNGSEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGSE 424 Query: 426 QPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + F P+ CP C + +L P K G A RC C AQ ER+ H R AF+IE Sbjct: 425 REFVMPTHCPECGT----ELAPAKEGD--ADIRCPNSRTCPAQLRERVFHVAGRGAFDIE 478 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQR----RQQTSTTKIENILGFGDVSVTNLYD 540 GLG + + A I D+FTL R TTK + G +TNL Sbjct: 479 GLGYEAAIALLQ----ARVITDEGDLFTLTADDLLRTDLFTTKAGELSANGKRLLTNL-- 532 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 K + L R + +L IRHVG AR+LA + S ++ I+A + ++ L Sbjct: 533 --GKAKAQPLWRVLVALSIRHVGPTAARALATEFGS-------LDAIVAASEEE---LAA 580 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 V VG IA A+ +++ + V+ + ++ ++ +V TG+L Sbjct: 581 VEGVGPTIAAAVTDWFTVDWHRTIVDKWRAAGVRMADERDASIERTLDGLSIVVTGSLTG 640 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+E + G + +S+KT ++ GD+PGSK +KA +LGV +++E+ F LL+ Sbjct: 641 YSRDEAKEAIIARGGKAAGSVSKKTAYVVAGDSPGSKYDKAIELGVPVLDEDGFRRLLE 699 >gi|158334366|ref|YP_001515538.1| NAD-dependent DNA ligase LigA [Acaryochloris marina MBIC11017] gi|190359221|sp|B0C308|DNLJ_ACAM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158304607|gb|ABW26224.1| DNA ligase, NAD-dependent [Acaryochloris marina MBIC11017] Length = 675 Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 233/722 (32%), Positives = 371/722 (51%), Gaps = 67/722 (9%) Query: 13 SIEQAR-KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +QAR +EL L Q+ SY YY P++ D+ YD L + +P L P Sbjct: 6 SSDQARVQELRQLLQKASY---AYYGLDAPLMEDAVYDQLYHELVDLEAQYPQLIT---P 59 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G V H IP SLE ++ D+ + R ++ + T E Sbjct: 60 DSPTQRVGERPATQFVSVQHRIPLYSLENAFDRGDMDTWDERWHKLVPNLSQEPGYVT-E 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVR 188 KIDG+ + + YE G V RGDG GE+++ +R I +IP L LNI PE +EVR Sbjct: 119 LKIDGSALALTYENGLLVRGTTRGDGTKGEEITQNVRTIRSIP--LRLNIEHPPEWLEVR 176 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF---VHGLG 244 GE ++ F +N + I G +ANPRNAA+G LR+L+ + R L+FF +H G Sbjct: 177 GEAFLGLQVFDQINRDRIQAGEAEFANPRNAAAGTLRQLDSKVVAERKLDFFAYTIHISG 236 Query: 245 KTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 T ++ + Q++ L+ ++ LGF VN RQ + + +YY++ R LPY DG+V Sbjct: 237 PTDDLALPQTQWQALETLKQLGFRVNPNRRQCESLAEVQTYYDDWSLKRLDLPYLTDGVV 296 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+D +Q +LG + PRW I+ K+ ++A+TR+ I + +GRTG LTPVA +PV + Sbjct: 297 IKLDNLGVQDELGFTQKFPRWAIAWKYPPEEAATRIEQITVNVGRTGALTPVAEFKPVQL 356 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ ATLHN D I L DI +GD V+V++AGE+IP+V+ ++ R Sbjct: 357 AGTTVSRATLHNRDRISEL-----------DIHIGDTVVVRKAGEIIPEVLRVLPELRPA 405 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 AQP+ P+ CP C V+ + A RC +C A L H+VSR A +I Sbjct: 406 GAQPYQMPTACPSCGQPAVQ------LETEAVTRCVNA-SCPAILRGSLIHWVSRGALDI 458 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG++ + S+ ++ AD++ L + K+ ++ G + +I Sbjct: 459 DGLGEKIVGQLTDSQ----MVQSVADLYEL------NEDKLMDLDRMGTKLARKIVSAIA 508 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + R ++ LGIRHVG+ A+ L + Y + ++ ++A + D + + Sbjct: 509 TSKQQPWHRVLYGLGIRHVGSVNAQLLTENYPT-------VDALMAVDGD---KIATIHG 558 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE------IENKKLVFTGT 657 +G IAQ++ E++Q P N ++ L S G + + SE + K V TGT Sbjct: 559 IGPEIAQSVYEWFQTPTNQTLIQRL-----QSAGLQFEAIVSESTQPQTLSGKTFVITGT 613 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L ++R +A++ + G V+ +S+ T ++VG + GSKL KAQ LG+ ++E L L Sbjct: 614 LPTLKRDQAKQMIQDAGGKVTGSVSKNTSYVVVGADAGSKLTKAQSLGINQLSEADLLAL 673 Query: 718 LQ 719 LQ Sbjct: 674 LQ 675 >gi|77409440|ref|ZP_00786135.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1] gi|77171952|gb|EAO75126.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1] Length = 643 Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 231/692 (33%), Positives = 369/692 (53%), Gaps = 67/692 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DS+YD L R + P+ PN P +++GG + K H P Sbjct: 10 YYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNSPTHRVGGLVLEGFEKYQHEYP 66 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ K + + + E KIDG +++ Y G A R Sbjct: 67 LYSLQDAFSKEELIAFDKRV-----KAEFPTASYMAELKIDGLSVSLTYVNGILQVGATR 121 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG+ GE+++ ++ + IP L L+ I VRGE Y+ K F A+N E A G + +A Sbjct: 122 GDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYLPKESFEAINIEKRANGEQEFA 179 Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+LN + R L F++ + S + Q ++L+++ GF VN+ Sbjct: 180 NPRNAAAGTLRQLNTGIVAKRKLATFLYQ--EASPTQKETQDDVLKELESYGFSVNHHRL 237 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 +++ I + ++ R +LPYDIDG+V KV+ ++Q++LG ++PRW I++KF + Sbjct: 238 ISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIAYKFPAE 297 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 + +L +D +GRTG++TP A L PV + G ++ ATLHN DYI + Sbjct: 298 EKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEK 346 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIR+GD V+V +AG++IP V+++++++R+ + P CP C S +V + Sbjct: 347 DIRIGDTVVVYKAGDIIPAVLNVVMSKRN-QQEVMLIPKLCPSCGSELVHFEDE------ 399 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RC L C Q ERL HF SRDA NI G G ++ F A I ADI+ L Sbjct: 400 VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVEKLFD----AHLIADVADIYRL 454 Query: 514 QRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 IE++L G + S T +Y +I + S E+ +F LGIRHVG++ +R L Sbjct: 455 S---------IEDLLTLDGIKEKSATKIYHAIQSSKENSAEKLLFGLGIRHVGSKASRLL 505 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + + + + +Q IA + +G +IA+++ F++ V+ LL+ Sbjct: 506 LEEFGNLRQLSQASQESIA----------SIDGLGGVIAKSLHTFFEKEE----VDKLLE 551 Query: 631 EVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 E++ + K VS++ + L V TG L+K+ R++A+E + LGA V+ +S+KT Sbjct: 552 ELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEKLQNLGAKVTGSVSKKT 611 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 D+I+ G + GSKL KAQ LG+ I +E+ L L Sbjct: 612 DLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 643 >gi|319744895|gb|EFV97229.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae ATCC 13813] Length = 652 Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 236/713 (33%), Positives = 378/713 (53%), Gaps = 70/713 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E EL SL ++ + YY P + DS+YD L R + P+ PN Sbjct: 1 MENRMNELVSL---LNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNS 54 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +++GG + K H P SL+ ++ E+L F R+ K + + + E K Sbjct: 55 PTHRVGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRV-----KAEFPTASYMAELK 109 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG +++ Y G A RGDG+ GE+++ ++ + IP L L+ I VRGE Y+ Sbjct: 110 IDGLSVSLTYVNGILQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYL 167 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 K F A+N E A G + +ANPRNAA+G LR+LN + R L F++ + S + Sbjct: 168 PKESFEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLYQ--EASPTQKE 225 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q ++L+++ GF VN+ +++ I + ++ R +LPYDIDG+V KV+ ++Q Sbjct: 226 TQDDVLKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQ 285 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ AT Sbjct: 286 EELGFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRAT 345 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DYI +DIR+GD V+V +AG++IP V+++++++R+ + P Sbjct: 346 LHNVDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRN-QQEVMLIPK 393 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S +V + A RC L C Q ERL HF SRDA NI G G ++ Sbjct: 394 LCPSCGSELVHFEDE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVE 446 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNIS 549 F A I ADI+ L IE++L G + S T +Y +I + S Sbjct: 447 KLFD----AHLIADVADIYRL---------SIEDLLTLDGIKEKSATKIYHAIQSSKENS 493 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 E+ +F LGIRHVG++ +R L + + + + +Q IA + +G +IA Sbjct: 494 AEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIA 543 Query: 610 QAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQRH 664 +++ F++ V+ LL+E++ + K VS++ + L V TG L+K+ R+ Sbjct: 544 KSLHTFFEKEE----VDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRN 599 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +A+E + LGA V+ +S+KTD+I+ G + GSKL KAQ LG+ I +E+ L L Sbjct: 600 EAKEKLQNLGAKVTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652 >gi|255348508|ref|ZP_05380515.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70] gi|255503049|ref|ZP_05381439.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70s] gi|255506721|ref|ZP_05382360.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D(s)2923] gi|296434735|gb|ADH16913.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/150] gi|296438453|gb|ADH20606.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/11023] Length = 663 Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 235/704 (33%), Positives = 381/704 (54%), Gaps = 53/704 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL- 75 +R + +L E+ HD CYY ++P I D YD R I P+ S P L Sbjct: 5 SRDDYIALCTELVEHDRCYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ G+ + V HS P LS+ ++++++L +F +R +K S ++LE KID Sbjct: 65 DRPSGQFPV----VPHSSPMLSIANVYSLQELEEFFSRT----EKLLGYSPGYSLELKID 116 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + IRYEK F A RG+G GED++A + I ++P L PE +EVRGEV++S Sbjct: 117 GIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSY 176 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 F LN G+ +ANPRNAA G L+ L+ + R L+ V+GL ++ + Sbjct: 177 EAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ GF V +Q + +V E++ +R+ LP IDG+V KVD + Q + Sbjct: 235 FENLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDR 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+ Sbjct: 295 LGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLY 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D I+ +DIR+GD V V++ GEVIPK+V I + +R +++P+ PS C Sbjct: 355 NQDEIE-----------KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C VV++ + RC L CS LE++ F S+ A NI+ LG++ + Sbjct: 404 PVCHEPVVKE--------KVSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ I +DIF L + ++ + GF D S+ NL SI + ++L+R + Sbjct: 455 FE----VGLISSCSDIFAL------TEEDLKQVPGFKDRSIQNLLASIAGAKKVALDRLL 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +L I VG+ A +LA ++ + ++ +I + D+ L+ + +G +A +IV Sbjct: 505 TALSIPFVGSSGAIALADHFGT-------LDKVIEASLDE---LMSIEGIGPKVAASIVA 554 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ N + ++E+ + + + + ++ K V TGTLQ++ R +A+E + LG Sbjct: 555 FFSKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLG 613 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS+ +S+ T +I G G KL+KAQ LG+ I NE + L +L Sbjct: 614 GKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRIL 657 >gi|310657889|ref|YP_003935610.1| DNA ligase [Clostridium sticklandii DSM 519] gi|308824667|emb|CBH20705.1| DNA ligase, NAD(+)-dependent [Clostridium sticklandii] Length = 683 Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 236/709 (33%), Positives = 381/709 (53%), Gaps = 64/709 (9%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +++ L + I +H YY P I D+++D L + A+ +P+ +ED P +IG Sbjct: 13 KINELRERIEHHSILYYVQDSPEISDADFDMLMKELIALEEKYPEYI-TED--SPTQRIG 69 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE +V HS+ +SL ++ +DL F +R+ + K + + LE KIDG + Sbjct: 70 GEALSKFDQVRHSVQMMSLSNAFSKQDLLDFDSRVRQMIPKPE-----YVLEFKIDGLSV 124 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 + YEKGKF A RGDG GEDV+ ++ I +IP L + + VRGEVYI K F Sbjct: 125 ALTYEKGKFKVGATRGDGVVGEDVTKNLKTIKSIPMKLKEEVSLV--VRGEVYIPKEKFK 182 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQY-- 255 LN + G +ANPRNAA+G LR+L+ ++IT R L+ F+ L EI K Y Sbjct: 183 ELNLQQEENGLALFANPRNAAAGSLRQLD-SNITAKRPLDIFIFNL---QEIIDKDIYTH 238 Query: 256 -EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK---SIRSTLPYDIDGLVYKVDEFSL 311 E L+ ++ LG V+ N + + + ++E+ R L ++IDG+V KV++ + Sbjct: 239 SEALEYLKALGLKVSP---MRNVYSSMEAVWDEISVWHDKRHELDFEIDGIVIKVNDLAQ 295 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + LGE A++PRW I++KF ++ T++ DI +Q+GRTG +TP A L PV I G+ ++ A Sbjct: 296 RAMLGETAKAPRWAIAYKFPAERQLTQIEDIIVQVGRTGTITPTAILTPVRIAGSTVSRA 355 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED+IK +DI++ D +++AG++IP+V ++ +++R F P Sbjct: 356 TLHNEDFIK-----------AKDIKIKDWAYIQKAGDIIPEVYEVDISKRTGVEYEFKMP 404 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + VR G+ AA +C + C AQ + HFVS+ A +I+ LG+ + Sbjct: 405 ETCPECHTPTVR----VEGE--AALKCP-NITCPAQIKRGIIHFVSKSAMDIDKLGEAIV 457 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 ++ A I ADI+ L + + ++ G SV+NL +SI + + L+ Sbjct: 458 IQLYE----AGLINDMADIYYLNPDEILALPRM------GSKSVSNLMNSIEESKTAGLD 507 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + LGIR++G + A++LA Y + Q L+++ +G+ +AQ+ Sbjct: 508 RLLIGLGIRYIGTKAAKTLASVYSDIEQIKQA----------SIEELLQIDEIGEKMAQS 557 Query: 612 IVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I EF++ N+ +E L L VS S+ + E K V TGTL+ ++R +A + Sbjct: 558 IFEFFKVEENLNLIERLKLAGVSMSVDKKNSQQKPIFEGMKFVLTGTLETLKRDEAAVLI 617 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + S+ +S+ T +I G+ GSKL+KA LGV ++NEE F LL+ Sbjct: 618 EERLGKTSSSVSKNTTAVIAGEEAGSKLDKAIALGVAVINEEVFKKLLK 666 >gi|146318834|ref|YP_001198546.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05ZYH33] gi|166216250|sp|A4VVK7|DNLJ_STRSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145689640|gb|ABP90146.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Streptococcus suis 05ZYH33] Length = 652 Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 219/682 (32%), Positives = 366/682 (53%), Gaps = 59/682 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YYQ +P + D+EYD L R + A P+L P+ P +++GG+M K +H P Sbjct: 19 YYQLDQPSVSDAEYDTLYRELVELETAHPELIL---PDSPTHRVGGKMLDGFEKYSHVYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YE G V A R Sbjct: 76 LFSLQDAFSREELEAFDQRV-----RKEFPQATYICELKIDGLSISLTYEAGNLVVGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + +P L +PE ++ VRGE Y+ K F +N + G Sbjct: 131 GDGSVGENITENLKRVADVP----LTLPEAVDITVRGECYMPKASFDRVNKQRQEAGEAE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 + NPRNAA+G LR+L+ + R L F++ SE A Q ++L+K+ LGF N+ Sbjct: 187 FVNPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSE--ATSQSQVLEKLDALGFVTNHE 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A + + ++ R LPY+IDG+V KV++ ++Q++LG ++PRW +++KF Sbjct: 245 YCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +L +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR+GD V+V +AG++IP V+ +V++ + + PS CP CQS DL + Sbjct: 354 EKDIRIGDTVIVYKAGDIIPAVLK-VVDKYRKEQEIMPIPSHCPSCQS----DLQHYEDE 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 + A RC + C +Q + +L+HF SRDA NI GLG ++ F A + ADI+ Sbjct: 409 V--ALRCINPI-CPSQLMSKLEHFASRDAMNIAGLGSSIVEKLFG----AGLVHDVADIY 461 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L + + + GF + S LY +I ++ S E +F LGIRHVG++ ++ L Sbjct: 462 KL------TVDDLLTLEGFKEKSANKLYQAIQTSKSNSAECLLFGLGIRHVGSKASKILV 515 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + + + A IA + +G +IA+++ F+ + + A LKE Sbjct: 516 EKFGDLETLAFADQEAIAS----------LEGLGQVIAKSLTTFFAS-EGAQQLLAELKE 564 Query: 632 VSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 ++ + V ++ + +V TG L++++R++A+ + LGA V+ +S+KT++++ Sbjct: 565 AKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGANVAGSVSKKTNLVV 624 Query: 690 VGDNPGSKLEKAQQLGVKIMNE 711 G + GS L KAQ+LG++I +E Sbjct: 625 AGTDAGSTLTKAQELGIEIKDE 646 >gi|226327977|ref|ZP_03803495.1| hypothetical protein PROPEN_01868 [Proteus penneri ATCC 35198] gi|225203681|gb|EEG86035.1| hypothetical protein PROPEN_01868 [Proteus penneri ATCC 35198] Length = 505 Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 203/528 (38%), Positives = 310/528 (58%), Gaps = 42/528 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L + +H+ Y+ P I D+EYD L A+ +P+L S+ P + Sbjct: 6 QQKIDKLRVTLRHHEYLYHVMDAPEIPDAEYDRLMNELKALEAEYPELITSDSPTQRV-- 63 Query: 78 IGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 G + L+ F +V H IP LSL+ ++ F R+ + K+ I F E K+DG Sbjct: 64 --GALPLTAFEQVRHEIPMLSLDNAFDETSYLAFDKRLRD--RLKNSEEITFCCELKLDG 119 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 +++ YE G V AA RGDG +GE+++ +R I IP R+ NIP IE+RGEV++++ Sbjct: 120 LAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLRLYGENIPTRIEIRGEVFMNE 179 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAK 252 F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 180 KGFEYLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL-PT 238 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Y+ LQ+ + G PV++ V+ ++ +Y+ ++ IR L +DIDG+V KVD+ +LQ Sbjct: 239 SHYKRLQQFKKWGLPVSDAVKLCTGSKAVLDFYHHVEEIRPNLGFDIDGVVIKVDDIALQ 298 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +R+PRW I++KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++NAT Sbjct: 299 EELGFVSRAPRWAIAYKFQAQEQMTIIKDVEFQVGRTGAITPVARLEPVQVAGVVVSNAT 358 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L IR+GD V+++RAG+VIP+VV +I +R DAQ FP+ Sbjct: 359 LHNADEIERL-----------GIRIGDTVVIRRAGDVIPQVVSVIEEKRPADAQEIIFPT 407 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CPICQS D+ G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + +D Sbjct: 408 QCPICQS----DIERIEGEAVA--RCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIID 461 Query: 493 FFFKSEDPAFSIRIPADIF---------TLQRRQQTSTTKIENILGFG 531 + E ++ PAD+F L+R + S KI++ G Sbjct: 462 QLVEKE----YVKTPADLFFRLDEKILSGLERMGEKSAKKIDHCFRQG 505 >gi|25010923|ref|NP_735318.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae NEM316] gi|81457056|sp|Q8E5W1|DNLJ_STRA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|23095302|emb|CAD46512.1| Unknown [Streptococcus agalactiae NEM316] Length = 652 Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 236/713 (33%), Positives = 378/713 (53%), Gaps = 70/713 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E EL SL ++ + YY P + DS+YD L R + P+ PN Sbjct: 1 MENRMNELVSL---LNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENIL---PNS 54 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +++GG + K H P SL+ ++ E+L F R+ K + + + E K Sbjct: 55 PTHRVGGLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRV-----KAEFPTASYMAELK 109 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG +++ Y G A RGDG+ GE+++ ++ + IP L L+ I VRGE Y+ Sbjct: 110 IDGLSVSLTYVNGILQVGATRGDGNIGENITENLKRVHDIP--LHLDQSLDITVRGECYL 167 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 K F A+N E A G + +ANPRNAA+G LR+LN + R L F++ + S + Sbjct: 168 PKESFEAINIEKRANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLYQ--EASPTQKE 225 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q ++L+++ GF VN+ +++ I + ++ R +LPYDIDG+V KV+ ++Q Sbjct: 226 TQDDVLKELESYGFSVNHHRLISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQ 285 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ AT Sbjct: 286 EELGFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRAT 345 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DYI +DIR+GD V+V +AG++IP V+++++++R+ + P Sbjct: 346 LHNVDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLNVVMSKRN-QQEVMLIPK 393 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S +V + A RC L C Q ERL HF SRDA NI G G ++ Sbjct: 394 LCPSCGSELVHFEDE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSLVE 446 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNIS 549 F A I ADI+ L IE++L G + S T +Y +I + S Sbjct: 447 KLFD----AHLIADVADIYRL---------SIEDLLTLDGIKEKSATKIYHAIQSSKENS 493 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 E+ +F LGIRHVG++ +R L + + + + +Q IA + +G +IA Sbjct: 494 AEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGVIA 543 Query: 610 QAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQRH 664 +++ F++ V+ LL+E++ + K VS++ + L V TG L+K+ R+ Sbjct: 544 KSLHTFFEKEE----VDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRN 599 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +A+E + LGA V+ +S+KTD+I+ G + GSKL KAQ LG+ I +E+ L L Sbjct: 600 EAKEKLQNLGAKVTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL 652 >gi|78214056|ref|YP_382835.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9605] gi|123729638|sp|Q3AGK2|DNLJ_SYNSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78198515|gb|ABB36280.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9605] Length = 680 Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 227/705 (32%), Positives = 353/705 (50%), Gaps = 65/705 (9%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P + D+ YD L R + P L R P+ P ++GG V H + Sbjct: 21 AYYVLDAPEMEDTVYDRLYRELLELEQNDPGLQR---PDSPTQRVGGAPAEGFTSVEHRV 77 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 LSL+ +N +DLR + R+ + + D+ + E KIDG + + Y G AA Sbjct: 78 GMLSLDNAFNRDDLRAWHERLLKVLDRPSDSRLPLVGELKIDGNALALSYRNGVLERAAT 137 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG GE+++A +R I +IP L + N PE +EVRGE +I F A+N E Sbjct: 138 RGDGSRGEEITANVRTISSIPLRLQIENPPEWVEVRGEAFIPDATFAAINAEREQRDEAL 197 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNA +G LR+L+P + R L+FF + L + GQ+ L+ + GF VN Sbjct: 198 FANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPGDAQPPGQWAALEWLNSAGFRVNPN 257 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 I + + + R LPY DG+V K+D+ LQ + G ++PRW ++ K+ Sbjct: 258 RELCGDLAAIQRFCDHWEQGRHDLPYATDGVVVKLDDLQLQDEAGFTQKAPRWAVALKYP 317 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++A TRLL + Q+GRTG +TPVA E V + G ++ ATLHN D I L Sbjct: 318 AEEAPTRLLRVGAQVGRTGAITPVAEFEAVPLAGTSVSRATLHNADRIAEL--------- 368 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+ +GD ++V++AGE+IP+VV ++ R DA P P CP C S +VR+ + Sbjct: 369 --DLHLGDTIVVRKAGEIIPEVVRVLPELRPSDATPVQLPQQCPECGSNLVREGDE---- 422 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 AA RC +C A L+H+VS+ A +++GLG + ++ D + AD++ Sbjct: 423 --AATRCVNS-SCPAILRGGLRHWVSKGALDVDGLGSKLIEQLV---DRGLVGSL-ADLY 475 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L S ++ GD S TNL +++ + R ++ LGIRH+G A++LA Sbjct: 476 RLDAALLASLDRM------GDKSATNLVEALKASKQQPWHRQLYGLGIRHIGEVNAKALA 529 Query: 572 KYYLSYQNFAQ---EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 + S + A E IA + +G I+ ++ ++ P N + L Sbjct: 530 AAFFSIDSLATAALEAPEQIAELHG----------IGPEISASLGQWLHTPAN----QQL 575 Query: 629 LKEVSPSIGRHEKNVSSE--------------IENKKLVFTGTLQKIQRHKAQEYVTQLG 674 L+++ S+G + +SE ++ K LV TGTL + R +A+ + G Sbjct: 576 LQDLR-SVGFSLEASTSEQEAASQAGADADGVLQGKTLVLTGTLPNLSRSEAKALIETAG 634 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 VS +S+KTD ++ G+ GSKL KA+ LGV +++E LLQ Sbjct: 635 GKVSGSVSKKTDYLVAGEAAGSKLTKAESLGVTVLSEADLTALLQ 679 >gi|145220287|ref|YP_001130996.1| DNA ligase, NAD-dependent [Prosthecochloris vibrioformis DSM 265] gi|190359271|sp|A4SG85|DNLJ_PROVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145206451|gb|ABP37494.1| DNA ligase, NAD-dependent [Chlorobium phaeovibrioides DSM 265] Length = 674 Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 223/719 (31%), Positives = 362/719 (50%), Gaps = 58/719 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + I+ R E L +I H+ YY +KP + D ++D L R + P+L P Sbjct: 2 VGIDALRSEAERLRSDIERHNHLYYVEAKPELSDYDFDLLLDRLVQLEREHPELV---TP 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG + V H P LSL ++I ++ +F+ R+ R + + E Sbjct: 59 DSPTQRVGGTITKEFPSVEHREPMLSLANTYSIGEVEEFVGRLNRLLEAEGAQGRDTVAE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIP------EI 184 K DG +++ Y G + A RGDG G+D++ ++ +P+IP R+ + P Sbjct: 119 LKFDGVAVSLLYRDGLLIRGATRGDGRRGDDITVNLKTVPSIPLRLGEFDGPFSAGEGRE 178 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFV 240 +EVRGEV + K DF ALND R +ANPRNA +G L+ + ++ R ++ ++V Sbjct: 179 VEVRGEVLMRKEDFEALNDTRPEEDR--FANPRNATAGTLKLQDSREVARRSLWFVAYYV 236 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 GL + L+ + GF N R + I ++ R LPY+ D Sbjct: 237 SGLHDED----TRHVDRLKLLETAGFSTGNQYRLCHGIEEIEAFMQFWDEGRRALPYETD 292 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K+++ + LG ++SPRW I++K+ +A+T L DI Q+GR G +TPVA LEP Sbjct: 293 GVVVKLNDVRQWRLLGATSKSPRWAIAYKYPASRATTLLRDIVFQVGRLGTITPVAELEP 352 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V+I G+ + +TLHN D ++ L + GDRV+++++GEVIPKV+ +++ E Sbjct: 353 VHIAGSTVARSTLHNFDEMRRL-----------GVMPGDRVVIEKSGEVIPKVISVLLEE 401 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R P P+ CP C + +V+ G++ + C C AQ R+ HF SR+A Sbjct: 402 RPPGLSAKELPTHCPDCGTPLVQ----PEGEV--SWYCPNEEGCGAQIRGRVLHFASRNA 455 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +IE LG+ ++ ++ P D++ L+ + ++ G+ S NL Sbjct: 456 MDIENLGESLVEQLVAK----GMVKDPGDLYFLREEELAGLERM------GEKSARNLLQ 505 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 + K R S R +F LGIRHVG AR LAK S + + + L Sbjct: 506 GLLKSREQSFARLLFGLGIRHVGRATARELAKACSSIEVLKEA----------SFEELSE 555 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-VSSEIENKKLVFTGTLQ 659 VP +G +IA++I +++ P +E L + P V++ E +VFTG LQ Sbjct: 556 VPDIGPVIARSIRDWFLKPAIPSLIEKLRRAGLPLAAEEPGPLVNTNFEGLTVVFTGGLQ 615 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R A E V G +V + +S+KT +++ G GSKLEKA++LG++I+ E++F LL Sbjct: 616 RHDRSSAGELVVARGGIVVSTVSKKTGLVVAGKEAGSKLEKARKLGLRIITEDEFDALL 674 >gi|257463090|ref|ZP_05627491.1| NAD-dependent DNA ligase [Fusobacterium sp. D12] gi|317060689|ref|ZP_07925174.1| DNA ligase [Fusobacterium sp. D12] gi|313686365|gb|EFS23200.1| DNA ligase [Fusobacterium sp. D12] Length = 673 Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 233/700 (33%), Positives = 370/700 (52%), Gaps = 56/700 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L++++ + D YY ++ +I D EYD L + + + + D +G + Sbjct: 14 LQKKLRSYSDAYYSQNESLISDYEYDMLLKELETLEAEL----QIADETSITQTVGSSLK 69 Query: 84 LSLFKVT-HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN---SIFFTLEPKIDGTMI 139 + FK T H P LSL + I ++ FI R KK+ N ++ +E K+DG I Sbjct: 70 NTKFKKTAHRTPMLSLSNTYQIGEVEDFILR-----AKKNLNITENLEMEMEIKLDGLSI 124 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ YE+GK A RGDG GEDV+ + I TIP+ LS + IE+RGE+ + +F Sbjct: 125 SVIYEQGKLQRAVTRGDGVIGEDVTENVLQIETIPQELSEKLD--IEIRGEIVLPFTEFE 182 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEML 258 LN IA G + +ANPRNAASG LR+L+P + R+L + + + + Q E + Sbjct: 183 TLNQMRIAKGEEVFANPRNAASGTLRQLDPQIVKERHLAAYFYFIVNAEQYGIHSQKESI 242 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + L P + + + R LPY+ DGLV K++ + ++LG Sbjct: 243 SFLEKLSLPTTKICEVFQNIRELEARISHWSVERENLPYETDGLVLKINHIAFWEKLGST 302 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW +++KF KQ +T+LLDI Q+GRTG +TPVA LE V + G+ + A+LHN D Sbjct: 303 GKSPRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVKRASLHNYD- 361 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 +++R +DIR+GD V +++A E+IP+V+ + +R + + P CPIC Sbjct: 362 --------EILR--KDIRIGDTVFIEKAAEIIPQVIKAVKQDRTGEEKEIKAPEHCPICH 411 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S L K LV +C G C + +++FVSRD NI GLG + L+ F + Sbjct: 412 S-----LLEKEEGLVDL-KC-GNKHCPGKIQGEMEYFVSRDGMNISGLGGKILEKFLE-- 462 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 + DI+ L+ +++ ++E + G S+ NL SI + +N S E+ +++LG Sbjct: 463 --LHYLEDVGDIYYLKEKKE----ELEQVEKMGKKSIENLLTSIEESKNASYEKVLYALG 516 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I VG A+ LAK ++ IN + + +D L + +GD +A++IVEF+QN Sbjct: 517 IPFVGKVAAKLLAKE-------SKNINQLQSMTEED---LKEIEGIGDKMARSIVEFFQN 566 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 R +E L K V +K+ ++ ++ K + TGTL R + QE + +LG Sbjct: 567 ERKKELIEKLRK-VGLRFEETDKDTTAAKFLQGKTFLVTGTLSHYTRAELQEEIEKLGGS 625 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFL 715 + +S+K D +IVG+ GSKLEKA+ LG V I+ EE+FL Sbjct: 626 NLSSVSKKLDYLIVGEKAGSKLEKAKALGTVTILKEEEFL 665 >gi|328946560|gb|EGG40699.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1087] Length = 652 Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 229/699 (32%), Positives = 368/699 (52%), Gaps = 57/699 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED--PNGPL 75 ++ +S L + ++ + YY +P + DSEYD L R + + S D P+ P Sbjct: 2 KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELVELEEKY-----STDILPDSPT 56 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +++GG++ K H P SL+ ++ E+L F RI +K+ + + E KID Sbjct: 57 HRVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRI-----RKEFPQVSYLCELKID 111 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I++ YEKG V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 112 GLSISLTYEKGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPK 169 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 F A+N G +ANPRNAA+G LR+L+ + R L F++ +++ + Q Sbjct: 170 ASFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--Q 227 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L K+ L F VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++ Sbjct: 228 EAVLNKLADLDFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEE 287 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLH Sbjct: 288 LGFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLH 347 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N DYI +DIR D V+V +AG++IP V+ ++ ++R + +P PS C Sbjct: 348 NVDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHC 395 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ Sbjct: 396 PSCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKL 448 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F + D+ + R + ++EN F + S LY +I + S ER + Sbjct: 449 FAQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLL 498 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-V 613 F LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 499 FGLGIRHVGSKASRILLEKFHDIPKLSQASQEEIAA----------IDSLGTVIAQSLHT 548 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F Q I E + V+ + + + +V TG LQK+ R++A+E + L Sbjct: 549 YFEQEGSQILLAELQEEGVNLDYLGQKAVADAALSGMTVVLTGKLQKLTRNQAKEKLQSL 608 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 GA VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ Sbjct: 609 GANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647 >gi|215412865|ref|ZP_03421575.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 94_M4241A] gi|298526485|ref|ZP_07013894.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis 94_M4241A] gi|298496279|gb|EFI31573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis 94_M4241A] Length = 691 Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 225/709 (31%), Positives = 361/709 (50%), Gaps = 49/709 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ +L +E+ H YY PII D+E+D L RR +A+ P+L P+ P + Sbjct: 15 RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 71 Query: 79 GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + F+ V H LSL+ + ++L + RI+ + ++ + E KIDG Sbjct: 72 GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIH----AEVGDAAHYLCELKIDGV 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 +++ Y +G+ A+ RGDG +GEDV+ R I +P L+ +PE++EVRGEV+ Sbjct: 128 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 187 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG Sbjct: 188 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 247 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ +R G PV+ A G+ + Y+ E R + ++IDG+V KVDE Sbjct: 248 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEV 304 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + Sbjct: 305 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVG 364 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN IK R G + +GD V++++AG+VIP+V+ +V R + F Sbjct: 365 QATLHNASEIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFI 413 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S + + K G A RC C Q ER+ H SR+ +IE LG + Sbjct: 414 MPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYE 468 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +++ I ++F L R T G + L +++K + Sbjct: 469 AGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAP 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG AR+LA + S A + +A V VG IA Sbjct: 525 LWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQVAA----------VEGVGPTIA 574 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 A+ E++ + V+ + +++V + +V TG+L R A+E Sbjct: 575 AAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEA 634 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G + +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL Sbjct: 635 IVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 683 >gi|262037707|ref|ZP_06011149.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264] gi|261748179|gb|EEY35576.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264] Length = 697 Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 224/717 (31%), Positives = 383/717 (53%), Gaps = 62/717 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR----------- 67 +E L ++I ++ YY +P+I D EYD L ++ I P+L Sbjct: 16 EEYKKLREDIERYNRYYYDEDRPLISDKEYDDLIKKLQKIEEKNPELKNIYTVFSKDNSD 75 Query: 68 ----SEDPN-GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 E+P P KIGG + KV HS+P LSL +NI ++ F R + Sbjct: 76 ISDIEENPEITPTEKIGGTASEKFSKVVHSVPMLSLSNTYNISEIEDFDQRARKITGL-- 133 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 D + + LE K+DG I++ YEKG F A RGDG GEDV+ +R I ++P+ L +I Sbjct: 134 DKKLEYILELKLDGLSISLIYEKGMFKQAITRGDGQIGEDVTENVREISSVPKKLKDSID 193 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241 +EVRGE+ + ++F +N+ G +ANPRNAA+G +R+L+ + + R L+ +++ Sbjct: 194 --VEVRGEIVLPISNFNKVNEIREEAGEDVFANPRNAAAGTIRQLDSSIVKDRGLDCYLY 251 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 L K E ++ ++ LGF + + F + + R L Y+ DG Sbjct: 252 YLVNPERYEIKTHLESMEFIKKLGFKTTDIFEKYTDFKELEKSIEKWHDEREKLDYETDG 311 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 LV KV++FS +LG +SPRW I++KF +Q T+LLD+ Q+GRTG++TPVA LEPV Sbjct: 312 LVIKVNDFSYYNELGYTTKSPRWAIAYKFPAEQVKTKLLDVTFQVGRTGVITPVAELEPV 371 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+++ A+LHN D I+ ++I++GD V++++A E+IP+VV+++ +R Sbjct: 372 TLSGSVVKRASLHNFDEIE-----------RKEIKIGDNVIIEKAAEIIPQVVNVVFEDR 420 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + P+ CP+C S +V++ G++ A +C + C + +++FVSRDA Sbjct: 421 TGKEREIEKPTNCPVCGSELVKE----EGQV--ALKCLNPV-CPEKVKREIEYFVSRDAM 473 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI GLG++ ++ F + I+ DI++L+ ++ ++EN+ G SV NL ++ Sbjct: 474 NISGLGEKIVEKFIE----LGKIKTVVDIYSLKDYRE----ELENLEKMGKKSVDNLINN 525 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I + +N + ++SLGI VG A L K + + +N N + L+++ Sbjct: 526 IEESKNRGFNKVLYSLGIPFVGKFTANLLVKNFKNIENLK----------NSEIEELLQI 575 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSE---IENKKLVFTGT 657 VG+ +A ++ + N N + L + ++ S+ E+ + E I+ K + TG Sbjct: 576 KGVGEKVAISVHNYLNNEDNWGKINDLKGRGLNFSLENAEE-IEIEDNPIKGKNFLATGK 634 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 L+K +R + +E + G + +S+ D +I G+ GSKLEKA++L V+++ EE+F Sbjct: 635 LEKYKREEIKEIILSKGGNYLSGVSKNLDFLIAGEKAGSKLEKAEKLNVRVLTEEEF 691 >gi|284032790|ref|YP_003382721.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836] gi|283812083|gb|ADB33922.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836] Length = 709 Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 226/714 (31%), Positives = 361/714 (50%), Gaps = 49/714 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+ ++L +EI H YY + I D+++DAL I + +L P+ P Sbjct: 19 EVRERHAALSREIEEHRFRYYMATS-TISDADFDALMHELQGIEQQYQEL---RTPDSPT 74 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G ++ VTH SL ++ E + + R+ R + + F E K+D Sbjct: 75 QKVGVPISTLFAPVTHPTRMESLGNAFSAEQMEAWAKRLEREVTAQQIHDSGFLCELKVD 134 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194 G + + YE G+ V A RGDG +GEDV+ +R I +IP L+ + +P +EVRGEVY Sbjct: 135 GLALDLVYENGRLVTGATRGDGRTGEDVTLNVRTIDSIPNELAGDDLPSFLEVRGEVYFR 194 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 DF LN +++ G+ P++NPRN+A+G LR+ +P R L F VHGLGK + Sbjct: 195 VEDFEQLNAQLVEAGKDPFSNPRNSAAGSLRQKDPRVSAARPLRFVVHGLGKVEGYRVRR 254 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E ++++ G PV++ R+ T + + R ++ ++IDG+V KVDE LQ+ Sbjct: 255 LSEAYEQLKAWGLPVSDRARRVETLAEVNEFIAHYGENRHSVDHEIDGVVVKVDEVDLQR 314 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG + +PRW I++K+ ++ +T+LLDI++ +GRTG +TP ++EPV + G+ + ATL Sbjct: 315 ALGSTSSAPRWAIAYKYPPEEVTTKLLDIEVNVGRTGRVTPYGKMEPVRVAGSTVEFATL 374 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN + +V R G + +GD V++++AG+VIP+++ ++ R +A PF P+ Sbjct: 375 HN---------AREVERKG--VWIGDTVVLRKAGDVIPEILGPVIELRPQEAHPFRMPTQ 423 Query: 434 CPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + L P K G + RC +C AQ ERL H R AF+IE LG + D Sbjct: 424 CPSCGT----TLRPMKEGDVDI--RCPNAQSCPAQLRERLFHLAGRSAFDIEVLGFKAAD 477 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 E I D+F L + + G + L ++ + L R Sbjct: 478 ALISGE----LITDEGDLFDLTEQDLGRSPFFTTKAGALSANAKRLLANLETAKTQPLAR 533 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + +L IRHVG + +I+ I A D+ L ++ VG IA A+ Sbjct: 534 GLVALSIRHVG-------PTAAAALAAAYDDIDAIQAAGEDE---LAQIEGVGPTIAHAV 583 Query: 613 VEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +E++Q R A L++ R V + +V TGT++ R +A Sbjct: 584 IEWFQVDWHQQIVRKWKAAGVQLRQE-----RTGPTVEQTLTGLSVVVTGTVEGFSRDEA 638 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 E + G + +S+KT ++VGD+PGSK +KA QLGV I++ F LL Q Sbjct: 639 TEAIVSRGGKAAGSVSKKTSFVVVGDSPGSKYDKAVQLGVPILDAAGFEVLLDQ 692 >gi|303232470|ref|ZP_07319159.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4] gi|302481435|gb|EFL44506.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4] Length = 836 Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 254/754 (33%), Positives = 378/754 (50%), Gaps = 90/754 (11%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L + ++YH YY P+I D+++DA + A+ A P+LA P ++GG ++ Sbjct: 103 LRRLLTYHAWRYYALDDPLISDAQFDAYLQELIALEQAHPELA---SPTSYTQRVGGFVS 159 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITR----IYRFWQKKDDNSI------------- 126 TH+ S++ N+++L ++ R + + + +D S Sbjct: 160 RQFAACTHAKRMYSIDDAMNLDELDLWLERTCDALAKLAESYEDASAPVPEGTSAAAQAA 219 Query: 127 --------------FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT 172 FT E KIDG I + YE G+FV AA RGDG GEDVSA + I Sbjct: 220 ADARARMRKALLSPTFTCELKIDGLGIALTYESGQFVRAATRGDGAVGEDVSANVLTIAD 279 Query: 173 IPRVL---------SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGI 223 +PR L + + +EVRGEVY+ K F+ LN+E A G +ANPRNAA+G Sbjct: 280 VPRALKPQGLAHVRNSGLNYALEVRGEVYMPKQSFVRLNEEADAQGTATFANPRNAAAGS 339 Query: 224 LRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281 LR+ NP +IT R L F++ + + Q+E L + GF N ++ + Sbjct: 340 LRQKNP-EITAHRDLKTFMYAVATRDGLDVHTQHEFLAWLASCGFSTNTKFATCHSAREV 398 Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341 + RS L YDIDG+V KVD+ + Q +G AR+PRW I++KF +Q T L D Sbjct: 399 HDFCKRALEHRSELDYDIDGVVVKVDDMAAQDAMGFTARAPRWAIAYKFPPEQKQTLLRD 458 Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401 I IQ+GRTG+LTPVA EPV + G+ I ATLHN D +V R RD+RVGD + Sbjct: 459 ICIQVGRTGVLTPVAEFEPVLVAGSTIARATLHNLD---------EVTR--RDVRVGDTI 507 Query: 402 LVKRAGEVIPKVVDIIVN----ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR 457 +V +AG+VIP+VV ++ E H + P CP C S VV++ G++ A R Sbjct: 508 IVHKAGDVIPEVVGPVLEGAMAEAHAARPRWQMPRVCPSCGSSVVQE----DGEV--AFR 561 Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ-LDFFFKS--EDPA-FSIRIPADIFT- 512 C + C AQ ERL H+VSR A +I+GLG++ + +S D A F R+ D+ Sbjct: 562 CV-SIDCPAQAKERLVHWVSRKAMDIDGLGEELIIKLIGRSLVRDVADFYDRLTCDMIAK 620 Query: 513 --LQRRQQTST---TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 R +TST + + IL G T +Y I + L R +F LGIRHVG +A Sbjct: 621 LDTGRYYKTSTGAHNEGDPIL-VGSTVATKIYAQIEASKQAGLARVLFGLGIRHVGQNVA 679 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +A Y A ++ ++A + S + VG IA+++ +F +N + Sbjct: 680 GLIAAY-------AGSLSQLMAAQPTEIAS---IDGVGPKIAESVHKFLSIEQNRTVITR 729 Query: 628 LLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 L V S + + V TGTL + R A + + LGA VS +S+KT Sbjct: 730 LAAAGVRLSEREDAAPTAQTLHGYTFVLTGTLDGMARTDAADALRALGAKVSGSVSKKTS 789 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +I G+N GSKL++A +LGV ++ + + +L+Q Sbjct: 790 FVIAGENAGSKLDRAHELGVCVIGKPELDEILRQ 823 >gi|221195651|ref|ZP_03568705.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626] gi|221184417|gb|EEE16810.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626] Length = 706 Score = 353 bits (905), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 232/702 (33%), Positives = 368/702 (52%), Gaps = 57/702 (8%) Query: 41 PIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEK 100 P + D+E+D L I A P+L P ++GG ++ VTH+ S++ Sbjct: 32 PELTDAEFDRLLVELQGIEAAHPELIV---PESYTQRVGGYVSEQFEPVTHAARMYSIDD 88 Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160 N+E+L ++ R + + +T E KIDG I + Y +G+ V A RGDG +G Sbjct: 89 AMNLEELDAWLARTDEALGASKTHPVAYTCELKIDGLGIALTYTEGQLVRGATRGDGATG 148 Query: 161 EDVSACIRAIPTIPRVLS-LNIPEI--------IEVRGEVYISKNDFLALNDEMIAVGRK 211 E+V+A I IPR L+ + + +EVRGEVY+ K+ F+ LN++ A G++ Sbjct: 149 ENVTANALTIKDIPRALAPAGLARLRDEGAHLSLEVRGEVYMPKHSFVRLNEDADAAGKQ 208 Query: 212 PYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270 P+ANPRNAA+G LR+ +P R L F++ + + + Q++ L +R GF VN Sbjct: 209 PFANPRNAAAGSLRQKDPKVTAHRDLETFMYAIADEAPLQVDSQWKFLSWLRDCGFSVNT 268 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 + + + + RS L YDIDG+V KVD F+ Q++LG +R+PRW I+ KF Sbjct: 269 HAARCVSAQEVHDFCKRALEERSELDYDIDGVVVKVDSFAYQEELGFTSRAPRWAIAFKF 328 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 ++ T L +I IQ+GRTG+LTPVA +PV + G+ I ATLHN D +V R Sbjct: 329 PPEEKQTVLREIRIQVGRTGVLTPVAEFDPVVVAGSTIARATLHNID---------EVHR 379 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 +++R GD ++V +AG+VIP+VV ++ +R +++PF P+ CP C S VV++ G Sbjct: 380 --KNVREGDTIIVHKAGDVIPEVVRPVLEKRPLNSKPFMMPTVCPSCGSPVVKE----EG 433 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK----SEDPAFSIRI 506 ++ A+RC + C AQ ERL H+ SR A +I+GLG++ ++ S+ F ++ Sbjct: 434 EV--AYRCV-SIDCPAQATERLIHWGSRKAMDIDGLGEELVNKLVANGILSDVADFYDKL 490 Query: 507 P-ADIFTLQRRQQTSTTKIENILG----FGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 +DI L + T ++ G G + I + + L R +F +GIRH Sbjct: 491 TVSDIAELPTGRFYETDTDGHLSGDPIPTGLTIAEKIMTQIQESKTRGLARVLFGIGIRH 550 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VGA +A LA+Y+ S Q +A + VG +A++I EF+ P N Sbjct: 551 VGANMAALLAQYFHSIQELQLATEEQMA----------AISGVGPKMAKSIKEFFLIPEN 600 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 I +E L + E + +S+ + V TGTL+ R +A + + GA V Sbjct: 601 IAVLERLR---VAGVVMEEADATSDKPQTLSGLTFVLTGTLEHYTRDEAGALLKERGAKV 657 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 S +S+KT ++ G+ GSKL KA LGV +++E +L+ Sbjct: 658 SGSVSKKTSFVVAGEAAGSKLTKAVSLGVPVLSEADLERILE 699 >gi|57241999|ref|ZP_00369939.1| DNA ligase, NAD-dependent [Campylobacter upsaliensis RM3195] gi|57017191|gb|EAL53972.1| DNA ligase, NAD-dependent [Campylobacter upsaliensis RM3195] Length = 644 Score = 353 bits (905), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 233/684 (34%), Positives = 363/684 (53%), Gaps = 66/684 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY+ +P+ D EYD L R P L P+ P KI + K H Sbjct: 18 YYEEDEPLASDEEYDRLIREIKVFEKENPSLI---SPDSPTQKIAPTIQSKFKKSRH--- 71 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 L K+W++ED+ F R W K+ F +EPK DG + + Y+KG+ V AA R Sbjct: 72 ---LSKMWSMEDV--FDEEELRAWAKRARCEDGFFIEPKFDGASLNLLYQKGRLVSAATR 126 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GEDV+ ++ I IP+++ N IE+RGEV I K DF LN++ +A Sbjct: 127 GDGEIGEDVTLNVKEIANIPQII--NYEGEIEIRGEVVILKEDFERLNEKRAKENLSLFA 184 Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 NPRNAASG LR+L+ T IT R L F+ G+GK + FAK E++ +R LGF + V Sbjct: 185 NPRNAASGSLRQLD-TQITKERNLKFYPWGVGKHTLSFAK-HSELMCFVRELGFLKDEFV 242 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 R ++++Y E+ S+R P +DG+V +VD+ +L K+LG + P++M + KF Sbjct: 243 RVCKNLDEVLTHYKELLSLRDLKPMMMDGMVVRVDDIALCKELGYTIKYPKFMAAFKFPA 302 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + STRL+ + +Q+GR+G++TPVA LEPVN+ G ++ +A+LHN D I+ L Sbjct: 303 LEKSTRLVGVSLQVGRSGVITPVAVLEPVNLDGVVVKSASLHNFDEIERL---------- 352 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 ++R+ D V V R+G+VIPK+ + + R +A P CP+C+S ++ + G L Sbjct: 353 -NLRLNDFVSVIRSGDVIPKITKVFKDRRGENALKIERPKLCPVCESELLDE-----GAL 406 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 + L C A+ + + +FVS+ NI+GLG+ ++ ++ + I IF Sbjct: 407 IKCQ----NLDCKARLVNSIIYFVSKKCLNIDGLGESIVELLYEKQ----KITSIESIFR 458 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L+ + E + GF + +T L ++I + L RFI +LGI H+G A+ LA Sbjct: 459 LKFQD------FEGLEGFKEKKITKLLNAIESAKICPLYRFITALGIEHIGEVAAKKLAL 512 Query: 573 YYLS--YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + YQ +E N+ G+ +A ++VEF + N +EA K Sbjct: 513 SFDKEWYQKSFEEYKNLEGF--------------GEQMALSLVEFTR--VNQARIEAFYK 556 Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 ++ + E + S K V TGTL + R + + + +LG VS+ +S+KTD ++ Sbjct: 557 LLNLENEKQEISTQSPFYEKTFVITGTLSR-PRDEFKALIERLGGKVSSSVSKKTDFVLF 615 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQF 714 G+ GSKLEKA++LGVK ++E QF Sbjct: 616 GEEAGSKLEKARELGVKCIDEIQF 639 >gi|227893041|ref|ZP_04010846.1| DNA ligase [Lactobacillus ultunensis DSM 16047] gi|227865154|gb|EEJ72575.1| DNA ligase [Lactobacillus ultunensis DSM 16047] Length = 667 Score = 353 bits (905), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 222/710 (31%), Positives = 383/710 (53%), Gaps = 62/710 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +++++A+KE +SL +++ D YY P + D+ YD R + FP++ P Sbjct: 4 ITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELERQFPEIVT---P 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG+++ KV H IP LS+ +++ ++L++F R+ QK + + + +E Sbjct: 61 DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKDELKEFDQRM----QKLVGHPVEYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE GK V A+ RG+G+ GEDV+A R I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYENGKLVRASTRGNGYVGEDVTANARYIADIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN+E G + NPRNAA+G LR+L+P +T R L+ F++ E Sbjct: 175 YMGKKAFAKLNEEREEQGLTVFVNPRNAAAGSLRQLDPK-VTKRRQLSTFIYTWVNPPEG 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + +M LGF N R+ T I ++ +E + R++L Y IDG+V K+D+ Sbjct: 234 II-SQHQAIDRMHELGFHTNETGRKLATLDEIFAFIDEYTAKRNSLTYGIDGIVLKIDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +++++LG + PRW I++KF ++ T + DI +GRTG++TP A ++PV + G + Sbjct: 293 NIEQELGNTVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVA 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DY+ + +R+GD V + +AG++IP++ ++++ +R D++ + Sbjct: 353 RASLHNPDYL-----------NEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSEVYH 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C ++V + A RC +C AQ E + HF SR A NI GLG + Sbjct: 402 IPDTCPSCGQKLVHLEDE------VALRCINP-SCPAQVEEGITHFASRPAMNIAGLGPK 454 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + ++D ++ AD++ L + + + F + S+ NL +I+ + S Sbjct: 455 IVKQLI-AKDLVHNV---ADLYHL------NADDLAQLDHFKEKSINNLLTAIDNSKKNS 504 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +E I LGI HVGA+ AR +A+ + + + I++ D S + +G IA Sbjct: 505 VELLITGLGIDHVGAKAARLIAQKF-------KNLEKIMSLGVQDIAS---IDTIGMTIA 554 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNV-SSEIENKKLVFTGTLQKIQ 662 +++ ++ P + L++E+ S +G E+ + ++K +V TG L+ Sbjct: 555 ESMTTYFAQPE----AQKLVEELRESGLNMDYLGEDEEVAPDNPFKDKTVVLTGKLEHYT 610 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 R + + + LGA V+ +S +TD +I G + GSK KAQQLGV ++ EE Sbjct: 611 RSEFTKKLQALGAKVTGSVSHRTDYVIYGKDAGSKYNKAQQLGVPLLTEE 660 >gi|261366975|ref|ZP_05979858.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176] gi|282571093|gb|EFB76628.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176] Length = 661 Score = 352 bits (904), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 233/710 (32%), Positives = 364/710 (51%), Gaps = 59/710 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQA+K L I ++ YY P + D EYDAL R AI FPDL P P Sbjct: 4 EQAQKRAEELRAVIEKNNRLYYDQDAPELEDFEYDALTRELKAIETEFPDLVT---PESP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG + KVTH++ SL+ +++E+LR F +R+ K + + +E KI Sbjct: 61 TQHVGGTASSKFTKVTHAVKMESLQDAFSLEELRDFDSRVREAGIKPE-----YVVEAKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++ Y G+ V + RGDG GEDV+ + I IP L N P +EVRGEVY+ Sbjct: 116 DGLSVSLEYRNGRLVRGSTRGDGMVGEDVTENLATIRDIPLQLE-NAPAFLEVRGEVYMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252 F L ++ + P+ NPRNAA+G LR+ N IT R L+ FV L + Sbjct: 175 HAAFFKLKEQQELEDKTPFKNPRNAAAGSLRQKN-AKITAERGLSIFVFNLQQCEGRSFA 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI---RSTLPYDIDGLVYKVDEF 309 +E L ++ LGFPV+ + + F I E+++I R TL +DIDG V KV++ Sbjct: 234 THHETLDYIKSLGFPVSP---RYSVFSSIEDAIREIQTIGELRGTLEFDIDGAVIKVNDL 290 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + ++ LG + PRW I+ K+ + + + DI++ +GRTG+LTP A +PV + G ++ Sbjct: 291 AARRVLGSTNKFPRWAIAFKYPPEVKESVVRDIEVTVGRTGVLTPTAVFDPVFLAGTSVS 350 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN D I L + +GD + V++AG++IP+V I V+ PD++PF Sbjct: 351 RASLHNGDIISSL-----------GVGIGDTIQVRKAGDIIPEV--IAVSAHGPDSKPFM 397 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + VV L +T A RC C AQ L L HF SRDA I+GLG + Sbjct: 398 MPTVCPSCGAPVVH-LQDET-----ALRCVNP-ECPAQSLRNLIHFASRDAMAIDGLG-E 449 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + ++ ++ AD+++L Q + K F S NL +I + + Sbjct: 450 AVAIQLTEKNLVHTV---ADLYSLNEEQLLTLDK------FKKKSAQNLLTAIEHSKTNN 500 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L++ +F LGIR++G + A LA+++ S + A + + V G ++A Sbjct: 501 LDKLLFGLGIRNIGDKAAALLAEHFGSME----------AIRSAGVEQMCEVDGFGAVMA 550 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 Q++ EF+ + + A L++ ++ + + K LV TGTL + R +A+ Sbjct: 551 QSVREFF-DKEGTSDLLARLEKAGVNMQWTGTPKGTALAGKTLVVTGTLPTLSRQEAEAL 609 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + Q G S +S+KT ++ G GSKL KAQ LG+ +++E L+Q Sbjct: 610 IVQNGGKASGSVSKKTSYVVAGTAAGSKLTKAQALGIPVIDEAGLYALIQ 659 >gi|207723346|ref|YP_002253745.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial sequence n terminus) protein [Ralstonia solanacearum MolK2] gi|206588545|emb|CAQ35508.1| probable dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial sequence n terminus) protein [Ralstonia solanacearum MolK2] Length = 568 Score = 352 bits (904), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 207/557 (37%), Positives = 304/557 (54%), Gaps = 51/557 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY +P + D+EYD L R +A+ P+L P+ P ++GG + V H +P Sbjct: 31 YYVLDQPSVPDAEYDRLYRALEALEAEHPEL---RTPDSPTLRVGGAVLPEFAPVRHVVP 87 Query: 95 TLSL--EKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 LS+ E + F + R + D + + E K DG I +RYE+G V A Sbjct: 88 MLSIRTETDTTADGALAFDASVRRELGLAESDPPVEYAAELKFDGLAINLRYEQGFLVQA 147 Query: 152 ALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 A RGDG +GEDV+ IR I IP R + +P+++EVRGEVY+ ++DF LN Sbjct: 148 ATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLNARQRER 207 Query: 209 GRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAKGQYEMLQKMRCLG 265 G K + NPRN A+G +R+L+P R L+FF +GLG+ + + ML + LG Sbjct: 208 GEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPETHSGMLDALVALG 267 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 FPV+ G+V ++ + + R +LP+DIDG+VYKV+ +LQ++LG R R PRW Sbjct: 268 FPVSKERAAVMGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNALALQRELGFRTREPRWA 327 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++HK+ ++A T + I +Q+GRTG +TPVARL PV +GG +TNATLHNED ++ Sbjct: 328 VAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEVR----- 382 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER---------------HPDAQPFSF 430 +D+RVGD V+V+RAG+VIP+VV +++ R P + PF Sbjct: 383 ------RKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPVQQPKSPPFEL 436 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S VVR+ G+ VA RC+GGL CSAQ+ E ++HF R +IEGLG++ Sbjct: 437 PKSCPVCGSHVVRE----EGEAVA--RCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERY 490 Query: 491 LDFFFKSE---DPAFSIRIPADIF-TLQRRQQTSTTKIENILGFGDVSVT---NLYDSIN 543 +D + E A R+ D F ++RR + G ++ NL I Sbjct: 491 IDNLVELEYVHGIADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAENLLAGIQ 550 Query: 544 KRRNISLERFIFSLGIR 560 + L RF+F+LGIR Sbjct: 551 ASKTPPLARFLFALGIR 567 >gi|323126984|gb|ADX24281.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 652 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 226/698 (32%), Positives = 367/698 (52%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L + ++ + YY P + DSEYD L R + + +P+ + P Sbjct: 2 KKRIRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQDSPT---QN 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ K + + E KIDG Sbjct: 59 VGGTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRV-----KSEFPDATYLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G+ A RGDG GE+++ ++ I IP+VL P I VRGE Y+S+ Sbjct: 114 SISLSYENGQLQVGATRGDGSVGENITENLKQIKDIPQVLPQ--PLTITVRGEAYMSRQS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F A+N+E G +ANPRNAA+G LR+L+ + R L F++ + S Q Sbjct: 172 FKAINEERQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLYQ--EASPTTRSQQDH 229 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ + LGF VN +++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 230 VLKALADLGFSVNQRHHLSSSMDEIWDFIQTVEAERDQLAYDIDGIVIKVNNLAMQEELG 289 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++PRW I++KF ++ +L +D +GRTG++TP A L+PV + G ++ ATLHN Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLKPVQLAGTTVSRATLHNV 349 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI +DIR+GD V+V +AG++IP V+ ++ ++R P PS CP Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVSDKRQEQV-PMWIPSQCPS 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS +V + A RC L C + L+HF SR+A NI GLG ++ F Sbjct: 398 CQSDLVHFEDE------VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLFL 450 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A + ADI+ L + + ++ G + S L +I ++ S E+ +F Sbjct: 451 ----AGLVHDVADIYKLTKED------LLHLDGIKEKSAEKLLAAIETSKSNSAEKLLFG 500 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+GA+ +R + + +I +++ +D + + +G +IA+++V+++ Sbjct: 501 LGIRHIGAKASRLILET-------CGDIEHLLTVREED---IATIDGLGMVIAKSLVQYF 550 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIE--NKKLVFTGTLQKIQRHKAQEYVTQLG 674 Q I VE LK ++ + + S E +V TG L+K+ R+ A+ + LG Sbjct: 551 QQDSAILLVEE-LKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A V+ +S+KTD++I G + GSKLEKAQ LG++I EE Sbjct: 610 AKVTGSVSKKTDLVIAGSDAGSKLEKAQALGIRIEGEE 647 >gi|326330727|ref|ZP_08197031.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1] gi|325951568|gb|EGD43604.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1] Length = 702 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 234/734 (31%), Positives = 374/734 (50%), Gaps = 64/734 (8%) Query: 16 QARKELSSLEQEISYH-DDCYYQY---SKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +A E S QE++ +D Y+Y P + D+++D RR + + FP+L P Sbjct: 8 EAGPEQKSEHQELAEQIEDARYRYYVLDDPTLSDADFDQKWRRINELEEQFPEL---RTP 64 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P K+GG + V H SL+ +++ E+L + RI K E Sbjct: 65 DSPTQKVGGTFSTEFTAVDHLQRMESLDNVFSFEELAGWHARI----AKDGAGQAELLCE 120 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEV 187 K+DG I + YEKG+ V A RGDG +GEDV+ +R I +IP L+ +P+++EV Sbjct: 121 LKVDGLAINLLYEKGRLVRALTRGDGRTGEDVTPNVRTIKSIPHRLTGTDEFPVPDLVEV 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 RGEV++S F LN ++ G+ +ANPRN+A+G LR+ +P TR L HG+G Sbjct: 181 RGEVFLSIEVFDKLNASLVDAGKPMFANPRNSAAGSLRQKDPRVTATRELGMVCHGIGAR 240 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLV 303 Q ++ G P +N V+ T + +SY+ E + ++IDG+V Sbjct: 241 EGFQPVAQSHAYDALKAWGLPTSNRVKVLKTLQEVEEFISYFGEHR--HDVTEHEIDGVV 298 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVD+ SLQ++LG +R+PRW I++K+ ++ + +LL ID+ +GRTG +TP +EP + Sbjct: 299 IKVDDISLQRRLGSTSRAPRWAIAYKYPPEEVNAKLLAIDVGVGRTGRVTPFGVMEPTKV 358 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ + ATLHN +K +D+R GD +++++AG+VIP+++ ++ R P Sbjct: 359 AGSTVERATLHNAHEVK-----------RKDVRPGDTIILRKAGDVIPEILGPVLPLR-P 406 Query: 424 DAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + P + P+ CP C + + K G RC C AQ ER+ R AF+ Sbjct: 407 EGLPEWVMPTECPACGTTLAEQ---KEGD--KDLRCPNHRGCPAQVRERVFFASGRGAFD 461 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT-------KIENILGFGD--- 532 IEG+G + D + I DIF L +TT K E G GD Sbjct: 462 IEGMGYEAADALLAA----EVITNEGDIFDLDEAGLATTTFFTRAAKKAEKEAGAGDRVL 517 Query: 533 -VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + L ++ +R+++ L R + +L IRHVG AR+LA + S ++ I A + Sbjct: 518 NANALGLLRNLEERKHVPLWRVLVALSIRHVGPSAARALATEFGS-------LDAIWAAS 570 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 ++ L VG IIA+AIVE+ Q + V+ +++V+ +E Sbjct: 571 QEE---LAATEGVGGIIAEAIVEWRQVDWHQEIVDKWRAAGVSLADERDESVARTLEGLT 627 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +V TG+L+ R A+E + G + +S+KTD ++VGDN GSK KA++LG+ I++E Sbjct: 628 VVVTGSLEDFSRDGAKEAIISRGGKAAGSVSKKTDYVVVGDNAGSKAAKAEELGLPILDE 687 Query: 712 EQFLFLLQQYNTTL 725 F LL+ T L Sbjct: 688 AAFKVLLEDGPTGL 701 >gi|260655066|ref|ZP_05860554.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1] gi|260630177|gb|EEX48371.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1] Length = 670 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 235/721 (32%), Positives = 368/721 (51%), Gaps = 67/721 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R L + ++ + YY P++ D E+D L +I PD R P+ P + Sbjct: 4 RARYDELVETVNENSYLYYVKDAPVLSDFEWDQLMNELLSIEREHPDWIR---PDSPSRR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + KVTH IP LSLE +++ E+L ++ +K+ + + E KIDG Sbjct: 61 VGGTALDAFEKVTHQIPMLSLEDVFSPEELTGWLAHA----EKEIGSQSEWCCELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y+ G FV A RGDGH GEDV+A +R + ++P L ++P ++EVRGEVY+ K Sbjct: 117 AISLIYQDGVFVRGATRGDGHVGEDVTANLRTVRSLPLKLRGSVPGLLEVRGEVYMDKTS 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F ALN G +ANPRN A+G LR+L+PT + R L F++ + E + Q + Sbjct: 177 FEALNRRREEAGEALFANPRNVAAGSLRQLDPTVTSQRNLQVFLYYVMNPHERGFETQSD 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L M +G PV R + + E + R L Y DG+V+K ++ L Sbjct: 237 CLNWMASVGLPVQPAWRVSRGTAEAAQFVEEWRDRRFDLSYGTDGVVFKANKLFDWDLLS 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW ++ K+ ++ + L ID+ +GRTG++TPVA +PV + G ++ A+LHN Sbjct: 297 ATSRTPRWAVAFKYPPEEKTVHLDAIDVSVGRTGVITPVAIFQPVVLSGTNVSRASLHN- 355 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 G++ R +DIRVGD + V++AGE+IP+VV + R PF P CP Sbjct: 356 --------GGEIAR--KDIRVGDWITVRKAGEIIPEVVKSDASRRDGTQTPFIMPERCPS 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---QQLDF 493 C VV+ G+ AA RC ++C AQ L RL HF SR A ++ GLG+ QQL Sbjct: 406 CGHPVVQ----LQGE--AALRCQ-NVSCPAQMLARLVHFASRGAMDVRGLGEALAQQL-- 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 S R+ + TL + + ++ + G+ S ++L ++ + L+R Sbjct: 457 --------LSSRL---VVTLADLYRLTADQLAGLERMGEKSASSLVQALEGAKKRPLDRL 505 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + +LGI VG AR+L + S + Q + L +V +G IA ++ Sbjct: 506 LVALGIPLVGPSAARALVGRFGSLEAIGQATED----------ELSKVEGIGPAIAGSVA 555 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---------IENKKLVFTGTLQKIQRH 664 + + N ALL++ S S+G E S E + +VFTG + + R Sbjct: 556 SWLADSAN----RALLQDFS-SLG-LEACTSREPTQPAQPGPWTGQVIVFTGEMASMPRS 609 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 +A E LGA V+ +S KT +++ G+ GSKL+KA LG+ +++EE+FL LQ +T Sbjct: 610 QASELARGLGAKVTGSVSSKTTLLVAGEAAGSKLDKANSLGIPVISEEEFLSRLQAAKST 669 Query: 725 L 725 L Sbjct: 670 L 670 >gi|298385661|ref|ZP_06995219.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14] gi|298261802|gb|EFI04668.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14] Length = 666 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 233/713 (32%), Positives = 369/713 (51%), Gaps = 63/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E+ H+ YY + P I D E+D R + A P+ +D N P + Sbjct: 4 KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G +++ + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDISKNFTQVAHKYPMLSLANTYSESEVTDFYERV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 117 SISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + + +R L+ +++ L + G Y Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK L Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINHWDVERKNLPVATDGIVLKVNSLRQQKNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+ V + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDAVQLSGTIVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429 D I+GL D+ +GD V V++ GE+IPK+ + DA+ F Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 F + CP C S+++R G+ AAH C AC Q R++HF+SR A NI+GLG + Sbjct: 400 FITNCPECGSKLIR----YEGE--AAHYCPNETACPPQIKGRIEHFISRKAMNIDGLGPE 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F++ I AD++ L+ I+ + G+ S N+ I + + + Sbjct: 454 TVDMFYR----LGLIHNTADLYELK------ADDIKGLDRMGEKSAENIITGIEQSKTVP 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER IF+LGIR VG +A+ +AK + Q D LI + +G+ IA Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFGDIDELQQA----------DLEKLISIDEIGEKIA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666 ++I+ ++ N N V LKE + R E+++S ++ + +V +G R + Sbjct: 554 RSILLYFSNESNRELV-GRLKEAGLQLYRTEEDMSGYTDKLAGQSIVISGVFTHHSRDEY 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 ++ + + G +S KT I+ GDN G +KLEKA++LGV I++E++FL L+ Sbjct: 613 KDLIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGVTILSEDEFLKLI 665 >gi|222152820|ref|YP_002561997.1| NAD-dependent DNA ligase LigA [Streptococcus uberis 0140J] gi|254781430|sp|B9DRS2|DNLJ_STRU0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222113633|emb|CAR41520.1| DNA ligase [Streptococcus uberis 0140J] Length = 652 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 229/707 (32%), Positives = 375/707 (53%), Gaps = 58/707 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E+ +EL+SL ++ + YY P + D EYD L + +P+ + + P+ Sbjct: 1 MEKRIRELTSL---LNQYRQEYYTNDNPSVSDQEYDKLYHELIDLEKEYPEYIQKDSPS- 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 +GG + K H P SL+ ++ E+L F R+ + K + + E K Sbjct: 57 --QAVGGLILSGFEKYQHPFPLYSLQDAFSKEELEAFDRRVKSEFPKAE-----YIAELK 109 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I++ YE G+ V A RGDG GE+++ I+ I IP L +I I VRGE Y+ Sbjct: 110 IDGLSISLSYESGRLVTGATRGDGSVGENITENIKKIKDIPHQLKDDI--TITVRGEAYM 167 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEIFAK 252 S++ F +N E G +ANPRNAA+G LR+L+ + + R L F++ S+ A+ Sbjct: 168 SRSSFQKINLERQENGETEFANPRNAAAGTLRQLDTSIVARRELASFLYQEASPSQ--AQ 225 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q ++L+ + LGF VN +++ I S+ +++ R L YDIDG+V KV+ ++Q Sbjct: 226 NQEDVLENLEALGFSVNKKRLISSSMEDIWSFITQVEDERDNLSYDIDGIVIKVNNLAMQ 285 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG ++PRW I++KF ++ +L +D IGRTG++TP A L P+ + G ++ AT Sbjct: 286 EELGFTIKAPRWAIAYKFPAEEKEAEILSVDWTIGRTGVVTPTANLTPIQLAGTTVSRAT 345 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFP 431 LHN DYI +DIR+GD V+V +AG++IP V+ ++ +R D Q P P Sbjct: 346 LHNVDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVDTKR--DQQLPMPIP 392 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP CQS +V L + A RC L C + L+HF SR+A NI GLG + Sbjct: 393 KVCPSCQSDLVH-LEAEV-----ALRCINPL-CPSLIQRSLEHFASRNAMNIAGLGPAIV 445 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F ++ I ADI+ Q S + + G + S L D+I ++ S + Sbjct: 446 EKLFSAQ----LIHDVADIY------QLSLDSLLTLEGIKEKSAQKLLDAIQSSKSNSAD 495 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIRHVGA+ +R L + + S +N + + IA ++ +G +IA + Sbjct: 496 KLLFGLGIRHVGAKASRLLLETFGSVENLMKADDQSIA----------QIDGLGHVIANS 545 Query: 612 IVEFYQNPRNICAV-EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I ++ + E K V+ + + S+++ +V TG L+++ R +A+E + Sbjct: 546 IKNYFAKEEAKQLIFELKDKGVNLDYLGKKVDTSAQLFGLTVVLTGKLEEMTRQEAKEKL 605 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +GA V+ +S+KTD++I G + GSKL+KA+ LG+ + +E L L Sbjct: 606 ENMGAKVTGSVSKKTDLVIAGSDAGSKLDKARSLGIDVKDENWLLQL 652 >gi|333030674|ref|ZP_08458735.1| DNA ligase [Bacteroides coprosuis DSM 18011] gi|332741271|gb|EGJ71753.1| DNA ligase [Bacteroides coprosuis DSM 18011] Length = 667 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 231/714 (32%), Positives = 378/714 (52%), Gaps = 62/714 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A+ + L + + + YY ++P I D E+D L + + P + +DPN P + Sbjct: 3 AKDRIDELRKYLHQQNYKYYILNQPEISDKEFDDLLKELQDLEKKNP---QYDDPNSPTH 59 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL--EPKI 134 +IG +++ + H P LSL ++ ++ +F R+ KK S F L E K Sbjct: 60 RIGSDIDKRFTQKEHKYPMLSLANTYSETEVAEFYERV-----KKALGSQPFELCCELKF 114 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193 DGT I++ Y+ GK V A RGDG G+ V+ ++ I TIP VL+ N P+ E+RGE+ + Sbjct: 115 DGTSISLTYQHGKLVEAVTRGDGTRGDMVTDNVKTIRTIPLVLNGDNYPDEFEIRGEILM 174 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252 F LN E A +ANPRNAASG L+ N + + +R L+ +++ L + + Sbjct: 175 PWVVFEELNAEKEAREEPLFANPRNAASGTLKLQNSSVVASRKLDAYLYYLLGENLPY-D 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 G YE L++ GF +++ +R+ T + + + R LP DG+V KV+ + Q Sbjct: 234 GHYENLEEASKWGFKISSEMRKCKTLQEVYDFIRYWDTARKDLPVATDGIVIKVNSIAQQ 293 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG A+SPRW I++KF ++A TRL ++ Q+GRTG +TPVA L+ V + G ++ A+ Sbjct: 294 EGLGYTAKSPRWAIAYKFQAEEARTRLNEVTYQVGRTGAITPVANLDAVQLSGTVVRRAS 353 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP-FSFP 431 LHNED I+GL D+ +GD V V++ GE+IPK+ + + R P F Sbjct: 354 LHNEDIIRGL-----------DLHIGDMVYVEKGGEIIPKITAVDTDARDEHLGPKVEFI 402 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + +VR G+ AAH C C Q R+ HF+SR A NI+GLG + + Sbjct: 403 KKCPECGTDLVR----YEGE--AAHYCPNETGCPTQIKGRIVHFISRRAMNIDGLGPETV 456 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNI 548 D F++ + AD++ L + Q ILG GD S N+ I + + + Sbjct: 457 DLFYRE----GLLHNAADLYQLTKEQ---------ILGLERMGDTSANNIIKGIEESKKV 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 R +F+LGIR VG +A+ LAK + + + A+ LI + +G+ I Sbjct: 504 PFARALFALGIRFVGETVAKKLAKAFKNIGDLAKASQE----------ELISIDEIGEKI 553 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHK 665 A++I+ ++ N V+ L+ E + ++E+ V+++ +E +V +G + R++ Sbjct: 554 AESIINYFSKEENRIMVQQLV-EYGVQLHQNEEEVANQTNKLEGAAIVISGVFKIHSRNE 612 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + + Q G +S KTD ++ G+N G +KLEKA++LG+KI++EE+FL L+ Sbjct: 613 YKALIEQNGGRNVGSISSKTDYVLAGENMGPAKLEKAEKLGIKIISEEEFLLLI 666 >gi|298245037|ref|ZP_06968843.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963] gi|297552518|gb|EFH86383.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963] Length = 700 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 220/701 (31%), Positives = 372/701 (53%), Gaps = 52/701 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+ K ++ L +I + Y+ P + D+EYD L I P+L P P Sbjct: 30 ERLAKRVAELRHQIEEANYQYHVLDNPTLSDAEYDQLMIELQRIEGEHPELV---TPESP 86 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPK 133 ++G + + +H +P LSL + ++L + Y+ Q N+ F + E K Sbjct: 87 TQRVGAGPLQDVAQYSHPVPMLSLANARSEKELYDW----YKRAQNILPNATFTYVCELK 142 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRGEV 191 IDG + + Y++G+ A RG+G GED + +R I +IP+ L + IPE +EVRGE+ Sbjct: 143 IDGLAMALTYDQGRLTMGASRGNGLVGEDWTPNVRTIRSIPQKLHDAAPIPEKVEVRGEI 202 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y+S F LN++M K +ANPRNAA+G LR+ +P TR L+FF + +G + Sbjct: 203 YMSTQSFEKLNEQMAE--NKLFANPRNAAAGSLRQKDPRITGTRNLDFFGYQIGYVQGMR 260 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + +E LQ ++ GFP+N V+ A+T ++++ N+ + R LPY+IDG+V K+++ + Sbjct: 261 IQSHWETLQLIKEWGFPLNPHVQLAHTLEEVMAFCNKWEHERFNLPYEIDGVVIKINDLA 320 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG AR PRW I+ K+ Q +TRLLDI + IGRTG + P A LEP+NI G ++ Sbjct: 321 HQEELGVVARDPRWAIAFKYPPIQVATRLLDIKVNIGRTGSVNPWAELEPINIRGVTVSR 380 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNE+ I+ +D+RVGD VLV+RAGEVIP+VV ++ +R + + Sbjct: 381 ASLHNEEDIQ-----------RKDLRVGDWVLVQRAGEVIPQVVKPVMEKRTGSEEVYHL 429 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C + ++R + A C L C A+ E HFVS+ A +++ +G++ Sbjct: 430 PENCPRCGTAIIRIPDQ------AMAYCP-NLQCPARNFESFTHFVSKGAMDMDTIGEKT 482 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + A ++ +D + L R + + G + S N+ ++I + L Sbjct: 483 CEQLME----AGYLQSVSDFYHLTR------DDLLELEGIKEKSANNMLNAIEASKQRPL 532 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R +F L IR+VG + A+ LA + +++ ++A + + VP +G I Q Sbjct: 533 SRLLFGLNIRYVGEKTAQLLADAF-------GDMDTLMAASE---AQINEVPGIGPKIGQ 582 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ +++Q N +E L+ ++ K+V + + + TG L + R A+E + Sbjct: 583 SVAQWFQQEENQALIER-LRAAGLNMREERKHVEGPLTGQSFLLTGRLNTMTRTAAEEAI 641 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 LG +++ +S+ +I G++ GSKL KAQ+ V + +E Sbjct: 642 KALGGTIASGVSKSLSHLIAGEDAGSKLAKAQKAKVPVHDE 682 >gi|319946751|ref|ZP_08020985.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641] gi|319746799|gb|EFV99058.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641] Length = 652 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 223/702 (31%), Positives = 378/702 (53%), Gaps = 60/702 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E KEL +L ++++ + YY P + D EYD L R A+ A P+L + PN Sbjct: 1 METRMKELVTL---LNHYAEEYYTKDAPSVSDYEYDKLYRELVALEEAHPELVQ---PNS 54 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +++GG + K H+ P SL+ ++ E+L F R+ +K+ ++ + E K Sbjct: 55 PTHRVGGTILKGFEKYQHTYPLYSLQDAFSYEELVAFDQRV-----RKEFPAVTYVCELK 109 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I++ Y +G A RGDG GE+++ ++ + IP VL P + VRGE Y+ Sbjct: 110 IDGLSISLSYVEGVLETGATRGDGSIGENITENLKRVRDIPLVLPE--PLTLTVRGECYM 167 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 + F A+N G +ANPRNAA+G LR+L+ + R L F++ + S Sbjct: 168 PRASFDAVNLSRQENGEAEFANPRNAAAGTLRQLDTKIVAERKLATFLYQ--EASPTDQT 225 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q ++L K+ LGF VN + + + +Y E+ ++R LPYDIDG+V KV++ ++Q Sbjct: 226 SQEKVLAKLERLGFVVNPHHKTVTSIEQVWAYIQEVAAMRDQLPYDIDGVVIKVNDLAIQ 285 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG ++P+W +++KF ++ +LL +D +GRTG++TP A L PV + G ++ AT Sbjct: 286 EELGFTVKAPKWAVAYKFPAEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRAT 345 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN DYI +DIR D V+V +AG++IP V+ +++++R + + PS Sbjct: 346 LHNVDYI-----------AEKDIRKDDTVIVYKAGDIIPAVLRVVMDKRVSEER-LEIPS 393 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP CQS ++ + A RC C AQ E L HF SRDA NI GLG ++ Sbjct: 394 HCPSCQSELLHFEDE------VALRCINP-RCPAQIKEGLAHFASRDAMNITGLGPAVVE 446 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F E ++ A I+ L + + + GF + S L D+I + S E+ Sbjct: 447 KLFSKE----LVQDVAGIYRL------TVDDLLQLDGFKEKSAQKLIDAIQASKGNSAEK 496 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 +F LGIRHVG++ ++ L + + S A+ E+ I A ++ +G ++A++ Sbjct: 497 LLFGLGIRHVGSKASQLLLQEFHSIPALAEAEVERIAAIDS-----------LGMVVAES 545 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEY 669 + ++ + +E LK+ ++ + V+++ + K +V TG L+++ R +A+ Sbjct: 546 LKRYFAQEGSQLLLEE-LKDAGVNLDYLGQKVAADAPLSGKTVVLTGKLERLTRSEAKAK 604 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 + LGA V+ +S+ TD+++ G + GSKL KAQ+L ++I +E Sbjct: 605 LEALGAKVTGSVSKNTDLLVAGSDAGSKLSKAQELSIEIQDE 646 >gi|15672401|ref|NP_266575.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. lactis Il1403] gi|81538437|sp|Q9CIE4|DNLJ_LACLA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|12723294|gb|AAK04517.1|AE006278_8 DNA ligase [Lactococcus lactis subsp. lactis Il1403] gi|326405996|gb|ADZ63067.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis CV56] Length = 654 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 233/716 (32%), Positives = 372/716 (51%), Gaps = 72/716 (10%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IE KEL+ + +Y YY +P + DSEYD L + + P L R++ P Sbjct: 1 MNIESKIKELTEKLNQYAYE---YYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRADSP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++ GG + K H SL +++ E+L + R+ +K+ + + E Sbjct: 58 T---HRTGGVILDGFVKFRHPYNLYSLGDVFSREELAVWEERV-----RKEIANPEYICE 109 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRG 189 KIDG +++ YE G + AA RGDG +GE+++ ++ I +P L + E I+ VRG Sbjct: 110 LKIDGLSLSLYYENGLLMTAATRGDGTTGENITENVKRIKDVP----LKLKEAIDIVVRG 165 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ + +F LN E G P+ANPRNAA+G LR+L+ + R L F++ + S Sbjct: 166 EAYLPRKNFAKLNKERELEGATPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQ--EASP 223 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q E+L+ LGF VN + A I + E +R LPYDIDG+V KV+ Sbjct: 224 ATNDTQEEVLEYFEELGFQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNN 283 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q++LG ++PRW I++KF +QA T +L +D +GRTG++TP A + PV + + Sbjct: 284 LAEQEELGFTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN DYI+ +DIR+GD VL+ +AG++IPKV +++++R + Sbjct: 344 ARATLHNVDYIE-----------EKDIRIGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGL 392 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C S ++ + A RC L C AQ E+L HF SRDA NI GLG Sbjct: 393 EIPTKCPECGSELIHFEDE------VALRCVNPL-CPAQIREKLIHFASRDAMNIVGLGP 445 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKR 545 + F ++ AD+ L + IE++L V T + +I + Sbjct: 446 SVISQLFDK-------KLVADVADLYQ------LTIEDLLTLDKVKETLAQKIVSAIAQS 492 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R S E+ +F LGIRHVG + A+ L + + + + ++ I+ +P +G Sbjct: 493 RENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSKATEEEISE----------IPSLG 542 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKI 661 +IA A+V +++ + LL E+ + + N+ + K +V TG L + Sbjct: 543 GVIATAVVSYFETD----GAKILLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTL 598 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +R +A+E + LGA VS +S+KTD+++ G+ GSKL KAQ LG++I +E+ L L Sbjct: 599 KRSEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQDLGIEIWSEQDLLDL 654 >gi|281490961|ref|YP_003352941.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147] gi|281374719|gb|ADA64239.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147] Length = 654 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 233/716 (32%), Positives = 372/716 (51%), Gaps = 72/716 (10%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IE KEL+ + +Y YY +P + DSEYD L + + P L R++ P Sbjct: 1 MNIESKIKELTEKLNQYAYE---YYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRADSP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++ GG + K H SL +++ E+L + R+ +K+ + + E Sbjct: 58 T---HRTGGVILDGFVKFRHPYNLYSLGDVFSREELAVWEERV-----RKEIANPEYICE 109 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRG 189 KIDG +++ YE G + AA RGDG +GE+++ ++ I +P L + E I+ VRG Sbjct: 110 LKIDGLSLSLYYENGLLMTAATRGDGTTGENITENVKRIKDVP----LKLKEAIDIVVRG 165 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ + +F LN E G P+ANPRNAA+G LR+L+ + R L F++ + S Sbjct: 166 EAYLPRKNFAKLNKERELEGAAPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQ--EASP 223 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q E+L+ LGF VN + A I + E +R LPYDIDG+V KV+ Sbjct: 224 ATNDTQEEVLEYFEELGFQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNN 283 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q++LG ++PRW I++KF +QA T +L +D +GRTG++TP A + PV + + Sbjct: 284 LAEQEELGFTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN DYI+ +DIR+GD VL+ +AG++IPKV +++++R + Sbjct: 344 ARATLHNVDYIE-----------EKDIRIGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGL 392 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C S ++ + A RC L C AQ E+L HF SRDA NI GLG Sbjct: 393 EIPTKCPECGSELIHFEDE------VALRCVNPL-CPAQIREKLIHFASRDAMNIVGLGP 445 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKR 545 + F ++ AD+ L + IE++L V T + +I + Sbjct: 446 SVISQLFDK-------KLVADVADLYQ------LTIEDLLTLDKVKETLAQKIVSAIAQS 492 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R S E+ +F LGIRHVG + A+ L + + + + ++ I+ +P +G Sbjct: 493 RENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSKATEEEISE----------IPSLG 542 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK----NVSSEIENKKLVFTGTLQKI 661 +IA A+V +++ + LL E+ + + N+ + K +V TG L + Sbjct: 543 GVIATAVVSYFETD----GAKILLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTL 598 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +R +A+E + LGA VS +S+KTD+++ G+ GSKL KAQ LG++I +E+ L L Sbjct: 599 KRSEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQDLGIEIWSEQDLLDL 654 >gi|325335472|gb|ADZ11746.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Riemerella anatipestifer RA-GD] Length = 669 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 224/712 (31%), Positives = 362/712 (50%), Gaps = 50/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S++ + ++ L +E+ H+ YY P I D E+D + + A+P+ A D Sbjct: 1 MSLDDIKHKIEELREELHQHNYNYYVLDTPSISDYEFDMMLEELKELELAYPEFA---DN 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG + + V H SL+ +N EDL + R+ + D I + E Sbjct: 58 NSPTQRVGGNITKNFPTVEHRHRMYSLDNSYNFEDLSDWQNRLIKSL---DTTDIEYVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I+I YE G F A RGDG G++++A ++ I IP + P +RGE+ Sbjct: 115 LKYDGASISILYENGAFKQAITRGDGFQGDEITANVKTISDIPLKIKGEYPNTFYIRGEI 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y++K F +N G + NPRN ASG L+ + T++ R L+ ++ + E Sbjct: 175 YLTKKHFNLINKAREKEGLDLFMNPRNTASGSLKMQDSTEVRKRKLSAVLYQV-VAEETP 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K +E+L++ + GF + + + ++ + R L ++IDG+V KV+ Sbjct: 234 VKTHWELLEQTKDWGFKTSQQAKLCKNLDEVKAFIDYWDKERQHLDFEIDGIVIKVNSLK 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG A+SPRW +++KF ++ T+L I Q+GRTG +TPVA L+PV + G ++ Sbjct: 294 QQQLLGYTAKSPRWAMAYKFKAEKVETQLESISYQVGRTGAITPVANLKPVLLAGTVVKR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ L+ + D V V++ GE+IPK+V + +R P+A + Sbjct: 354 ASLHNEDIIRKLNLHNQ-----------DFVYVEKGGEIIPKIVGVNEEKRQPNATLVEY 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 S CP C + +VR+ AAH C C Q + ++ H+VSR A NIE LG + Sbjct: 403 ISHCPECNTPLVRNEGE------AAHFCPNEAHCPPQVVGKMIHYVSRKALNIENLGSET 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F+ I AD +TL + Q ++ + S N+ D I K + I Sbjct: 457 IEQLFREG----LISNIADFYTLTKEQLLPLERM------AEKSAQNILDGIEKSKQIPF 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGI+HVG +A+ L K NF + I L V VG IA+ Sbjct: 507 EKVLFGLGIKHVGETVAKKLVK------NF----HTIDGLKKATLEELTEVEDVGIKIAE 556 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQ 667 ++V ++QN NI ++ LK + + E VS +E K +FTG L R +A+ Sbjct: 557 SLVNYFQNEENIEILDR-LKSYGIQLEQEENTNTKVSDALEGKTFLFTGKLSLFTREQAE 615 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLL 718 E V + G + +S+ + ++VG+ GSKL+KAQ LG V I++E++FL L+ Sbjct: 616 EMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQTLGTVTILDEQEFLDLI 667 >gi|88809499|ref|ZP_01125007.1| DNA ligase [Synechococcus sp. WH 7805] gi|88786718|gb|EAR17877.1| DNA ligase [Synechococcus sp. WH 7805] Length = 692 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 221/717 (30%), Positives = 371/717 (51%), Gaps = 58/717 (8%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + L Q ++ YY P + D+ YD L R + A P+L ++ P ++GG Sbjct: 6 AELRQLLNRAAHAYYVLDAPDLEDAVYDRLYRELLDLESAHPELVEADSPT---QRVGGS 62 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEPKIDG 136 VTH +P SL+ ++ ++LR + TR+ + ++ + ++ E KIDG Sbjct: 63 PAEGFRSVTHRVPLFSLDNAFSADELRGWYTRLIKVLDREPPSDSPLPALAMVGELKIDG 122 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 + + YE G V AA RGDG GE+++A +R I +IP L L+ P +EVRGE I Sbjct: 123 NALALSYENGVLVRAATRGDGDQGEEITANVRTIASIPLRLHLDHPPAWVEVRGEALIPD 182 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK-- 252 + F A+N E A +ANPRNA +G LR+L+P + R L+FF + L E + Sbjct: 183 STFAAINGERAARDEPLFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPEEWSGQRP 242 Query: 253 -GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q+E L+ + GF VN + ++++ S R L Y DG+V K+++ L Sbjct: 243 ASQWESLRWLEDAGFRVNPNAALLPNLEAVEQFFSDWDSRRHDLNYATDGVVVKLNDLRL 302 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q G ++PRW I+ K+ ++A +RLL + Q+GRTG++TPVA EPV++ G ++ A Sbjct: 303 QDAAGFTQKAPRWAIALKYPAEEAPSRLLKLTCQVGRTGVVTPVAEFEPVSLAGTSVSRA 362 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D ++ L D+ GD ++V++AGE+IP+V+ ++ R A P P Sbjct: 363 TLHNADRLQEL-----------DLHSGDTIIVRKAGEIIPEVLRVLPELRLEGALPLELP 411 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C S +VR+ +G+ AA RC +C A L+H+VS+ A +++GLG + + Sbjct: 412 HHCPSCGSDLVRE----SGE--AATRCVNS-SCPAILSGALRHWVSKGALDVDGLGSKLI 464 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + +R AD++ L TS ++ G+ S +NL ++ + R+ Sbjct: 465 EQLVER----GLVRSIADLYRLDTALLTSLERM------GEKSASNLVAALEQSRSQPWS 514 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++ LGI HVG A++LA + + A + + ++ + +G IAQ+ Sbjct: 515 RQLYGLGIHHVGEVNAKALASAFPDADSLA---DAAVLQPE----AITGLHGIGPEIAQS 567 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEK---------NVSSEIENKKLVFTGTLQKIQ 662 + +++ N ++ L++V ++ ++ N S ++ + V TGTL + Sbjct: 568 LQQWFSTSANQDLLQQ-LRDVGLTLAASDQERQTLADRSNGSGQLSGQTFVLTGTLPSLS 626 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +AQ + G VS +S+KT ++ GD GSKLEKA+ LGV +++E + L+Q Sbjct: 627 RSQAQALIEAAGGKVSGSVSKKTSFVVAGDEAGSKLEKAKSLGVSVLDEAALMLLIQ 683 >gi|323351288|ref|ZP_08086944.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66] gi|322122512|gb|EFX94223.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66] Length = 652 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 228/698 (32%), Positives = 366/698 (52%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F R+ +K+ + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELLAFDQRV-----RKEFPQVSYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YE G V A RGDG GE+++ ++ + IP L+L P I VRGE Y+ K Sbjct: 113 LSISLTYENGILVAGATRGDGSVGENITENLKRVKDIP--LTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ + S A Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPTQADSQE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 +L K+ L F VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++L Sbjct: 229 AVLNKLADLDFSVNPTHILADSIDSVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + +P PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVESKRVSE-EPLEIPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNINGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D+ + R + ++EN F + S LY +I + S ER +F Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYTAIQASKENSAERLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614 LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIA----------AIDSLGTVIAQSLHTY 549 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F Q I E V+ + + + +V TG LQK+ R++A+E + LG Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A VS +S+KT++++ G + GSKL KAQ+LG++I +E+ Sbjct: 610 ANVSGSVSKKTNLVVAGADAGSKLAKAQELGIEIRDED 647 >gi|116630136|ref|YP_815308.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323] gi|122272927|sp|Q041K2|DNLJ_LACGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116095718|gb|ABJ60870.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323] Length = 668 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 224/722 (31%), Positives = 379/722 (52%), Gaps = 70/722 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ QA +++ L +++ + YY P++ D+ YD + + FPDL S+ Sbjct: 4 LTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTSDSI 63 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++GGE+ L KV H +P LS+ +++ ++L++F RI + + + + +E Sbjct: 64 T---QRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLV----GHPVAYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y GK A+ RG+G GEDV+A + I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G + +ANPRNAA+G LR+L+ IT R L+ F++ + Sbjct: 175 YMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPKN 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + +M LGF N ++ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAIDEMNRLGFHTNQTGQRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G +++ Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTVVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DY++ + +R+GD V + +AG++IP++ +++N+R D++P+ Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPYQ 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 402 IPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGPR 454 Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 KQ +D F + AD++ L Q + + F D S+TNL SI Sbjct: 455 IVKQLIDKNF--------VNDVADLYHLTNEQ------LSQLDHFKDKSITNLLTSIENS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + S E +F LGI HVGA+ AR + + Y + + +Q L + +G Sbjct: 501 KQNSAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658 + IA+++ ++ P + + LL+E+ S +G E+ + K +V TG L Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + + Sbjct: 607 SDFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKI 666 Query: 719 QQ 720 ++ Sbjct: 667 EK 668 >gi|195941083|ref|ZP_03086465.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. EC4024] Length = 504 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 199/544 (36%), Positives = 313/544 (57%), Gaps = 52/544 (9%) Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 +EVRGEV++ + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+ Sbjct: 1 MEVRGEVFLPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGV 60 Query: 244 GKTSEIFAKGQYEMLQKMRCL-----GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 G I G R L G PV+N V+ ++ ++++Y++++ R TL +D Sbjct: 61 G----ILEGGDLPDTHLGRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFD 116 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KV+ +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARL Sbjct: 117 IDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARL 176 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G L++NATLHN D I L +R+GD+V+++RAG+VIP+VV+++ Sbjct: 177 EPVQVAGVLVSNATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVE 225 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 +ER D + FP+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR Sbjct: 226 SERPADTRAIEFPAHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSR 279 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +++G+G + +D + E + PAD+FTL + K+ + G S N+ Sbjct: 280 RAMDVDGMGDKIIDQLVEKE----YVHTPADLFTL------TAGKLTGLDRMGPKSAQNI 329 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +++ +N + RF+++LGIR VG A LA Y+ + + + L Sbjct: 330 VNALEAAKNTTFARFLYALGIREVGEATAAGLAAYFGTLDALEKATID----------EL 379 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLVF 654 +VP VG ++A + F+ N + LL++ +P + E+ + S K +V Sbjct: 380 QKVPDVGIVVATHVYNFFAEESNREVIGKLLEQGIHWPAPVVVNAEE-IDSPFAGKTVVL 438 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG+L ++ R A+ + LGA V +S+KTD++I G+ GSKL KAQ+LG+++++E + Sbjct: 439 TGSLSQLSRDDAKARLVALGAKVVGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 498 Query: 715 LFLL 718 + LL Sbjct: 499 MRLL 502 >gi|319956399|ref|YP_004167662.1| DNA ligase, nad-dependent [Nitratifractor salsuginis DSM 16511] gi|319418803|gb|ADV45913.1| DNA ligase, NAD-dependent [Nitratifractor salsuginis DSM 16511] Length = 657 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 235/698 (33%), Positives = 365/698 (52%), Gaps = 77/698 (11%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P + D YD L R +A A PD DP P ++G + K H Sbjct: 21 AYYVEDNPEVTDEVYDRLYREVEAYEKAHPD---EIDPTSPTQRVGAPLKEGFKKAKHLS 77 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 S+E ++N + ++ RI KK ++ +EPK DG + + YE G A Sbjct: 78 RMWSMEDVFNAAEFEEWFNRI----DKKYPGERYY-IEPKFDGASLNLIYENGLLKQAIT 132 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GEDV+A + I +IP L + +IE+RGEV ++ +F +N E IA G +P+ Sbjct: 133 RGDGVEGEDVTANAKTIRSIP--LDIAHKSLIEIRGEVLMTIEEFERINKERIAAGEQPF 190 Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L+P+ R L F G+G YE L + +G+ + G Sbjct: 191 ANPRNAAAGSLRQLDPSITAKRNLIFQPWGVGVND-----LDYEYLSDL--MGYVYDLGF 243 Query: 273 RQA------NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 R+ T I + Y ++ +RS LP +DG+V KVD +LQ+ LG + PRWM+ Sbjct: 244 RKPPLREVKRTPKEIEAVYEKLDKMRSQLPVMLDGMVVKVDRIALQEILGYTVKYPRWMV 303 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++KF + TRLLD+ Q+GRTG++TPVA LEPV I G ++ ATLHN DYI+ L Sbjct: 304 AYKFPAVEKQTRLLDVIPQVGRTGVITPVAVLEPVEIEGVVVERATLHNYDYIEKL---- 359 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 DIR+GD V V R+G+VIPK++ ++ R +P P+ CP+C S V+ + Sbjct: 360 -------DIRIGDMVTVIRSGDVIPKIIKVLPQYRTGKEKPIQRPTRCPVCGSEVLDE-- 410 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---QQLDFFFKSEDPAFS 503 G LV +C L+C A+ + + +F S+ NI+GLG+ QQL + Sbjct: 411 ---GPLV---KCQ-NLSCPARVVNSIIYFASKQCMNIDGLGEKIVQQL----------YD 453 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 + D+ L ++ K+E GFG+ L ++I + RF+ +LGI H+G Sbjct: 454 AGLVKDVEDLYHLKKEDLLKLE---GFGEKKAEKLLEAIEASKGRECWRFVNALGIEHIG 510 Query: 564 AEIARSLA-KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 ++ + K+ L + + +E +L+ + G+ +A + +EF + N Sbjct: 511 EVASKKICEKFGLDFIHADKE-------------ALLSIEGFGEEMANSFLEFMRV--NG 555 Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 V+ L++ V P + E+ V S K +V TG ++K R + +E + LGA V+ +S Sbjct: 556 EKVKRLMEIVRPKPPQKEEVVESPFTGKTVVLTGAMKK-PRSEIKEMLEHLGAHVTNTVS 614 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 KTD +I G++PGSK +KA+QLGV ++ EE+ +L + Sbjct: 615 HKTDYVIYGEDPGSKFDKAKQLGVTLLPEEKMWEMLGE 652 >gi|251782129|ref|YP_002996431.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390758|dbj|BAH81217.1| NAD-dependent DNA ligase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 652 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 225/698 (32%), Positives = 366/698 (52%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L + ++ + YY P + DSEYD L R + + +P+ + P Sbjct: 2 KKRIRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQDSPT---QN 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F R+ K + + E K+DG Sbjct: 59 VGGTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRV-----KSEFPDATYLAELKVDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G+ A RGDG GE+++ ++ I IP+VL P I VRGE Y+S+ Sbjct: 114 SISLSYENGQLQVGATRGDGSVGENITENLKQIKDIPQVLPQ--PLTITVRGEAYMSRQS 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F A+N+E G +ANPRNAA+G LR+L+ + R L F++ + S Q Sbjct: 172 FKAINEERQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLYQ--EASPTTRSQQNH 229 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L+ + LGF VN +++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 230 VLKALADLGFSVNQRHHLSSSMDEIWDFIQTVEAERDQLAYDIDGIVIKVNNLAMQEELG 289 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYI +DIR+GD V+V +AG++IP V+ ++ ++R P PS CP Sbjct: 350 DYI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVSDKRQEQV-PMWIPSQCPS 397 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 CQS +V + A RC L C + L+HF SR+A NI GLG ++ F Sbjct: 398 CQSDLVHFEDE------VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLFL 450 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 A + ADI+ L + + ++ G + S L +I ++ S E+ +F Sbjct: 451 ----AGLVHDVADIYKLTKED------LLHLDGIKEKSAEKLLAAIETSKSNSAEKLLFG 500 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRH+GA+ +R + + +I +++ +D + + +G +IA+++V+++ Sbjct: 501 LGIRHIGAKASRLILET-------CGDIEHLLTVREED---IATIDGLGMVIAKSLVQYF 550 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIE--NKKLVFTGTLQKIQRHKAQEYVTQLG 674 Q I VE LK ++ + + S E +V TG L+K+ R+ A+ + LG Sbjct: 551 QQDSAILLVEE-LKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A V+ +S+KTD++I G + GSKLEKAQ LG++I EE Sbjct: 610 AKVTGSVSKKTDLVIAGSDAGSKLEKAQALGIRIEGEE 647 >gi|284992468|ref|YP_003411022.1| DNA ligase, NAD-dependent [Geodermatophilus obscurus DSM 43160] gi|284065713|gb|ADB76651.1| DNA ligase, NAD-dependent [Geodermatophilus obscurus DSM 43160] Length = 716 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 218/708 (30%), Positives = 366/708 (51%), Gaps = 39/708 (5%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + AR L +E+ + YY P++ D +YD L +I A P L P+ P Sbjct: 26 DDARTRHRDLSEELDRYAFAYYVQDAPLVSDGQYDELMGELKSIEAAHPALVT---PDSP 82 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K+ G + V H SL+ ++ ++L + R+ +++ ++ + E K+ Sbjct: 83 SQKVNGGFAATFAPVKHLERMQSLDNAFSSDELSAWAARV----EREVGSAAVYLCELKV 138 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + YE+G+ + AA RGDG +GEDV+A +R + +P+ LS + +P ++EVRGE+Y Sbjct: 139 DGVAVDLVYERGRLLRAATRGDGVTGEDVTANVRTMDDVPQQLSGDDVPPLLEVRGEIYF 198 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 F +N +A G+ P+ANPRNAA+G LR+ + +R L VHGLG + Sbjct: 199 PVEAFAEVNAGQVADGKPPFANPRNAAAGSLRQKDARVTASRPLRLVVHGLGAREGFSPE 258 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E ++R LG PV++ V + G+ +Y + R ++ ++IDG+V KVD+ +LQ Sbjct: 259 RQSEAYARLRELGLPVSDRVEVLDDLEGVWAYIERYREQRHSVEHEIDGVVVKVDQVALQ 318 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +R+PRW I+ K+ ++A+T+LLDI + +GRTG +TP A +EPV + G+ + AT Sbjct: 319 RRLGSTSRAPRWAIAFKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVKVAGSTVQLAT 378 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN +K R G + +GD V++++AG+VIP+V+ +V R D + F P+ Sbjct: 379 LHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVAARTGDEREFEMPT 427 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + + + K G A RC +C AQ ER+ H R AF+IE LG + Sbjct: 428 HCPECGTELRHE---KEGD--ADIRCPNARSCPAQLRERVFHVAGRGAFDIENLGYEAGI 482 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + I D+F+L + T G + L ++ R+++ L R Sbjct: 483 ALLQE----HLIEDEGDVFSLDEEKLERTAFFTKKDGALSANGRKLLTNLQTRKDVPLWR 538 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + +L IRHVG A++LA+ + S A+ +A + VG IA+++ Sbjct: 539 VLVALSIRHVGPTAAQALARDFRSLDRIAEASEEELAAADG----------VGPTIARSV 588 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 E++ + VE E + +V TG+L+ R +A + + Sbjct: 589 KEWFAVDWHRGVVEKWRAAGVRMADEGEDAGPGPLTGVAVVVTGSLRDHSRDQAIAAIQE 648 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G V+ +S+KT ++VG +PGSK +KA Q+ I++++ F LL++ Sbjct: 649 RGGKVTGSVSKKTGFVVVGADPGSKYDKAVQVKAPILDDDGFRVLLEE 696 >gi|324993931|gb|EGC25850.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK405] gi|324994750|gb|EGC26663.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK678] gi|327463193|gb|EGF09514.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1] Length = 652 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 228/698 (32%), Positives = 368/698 (52%), Gaps = 55/698 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLN 76 ++ +S L + ++ + YY +P + DSEYD L R + +P D+ P+ P + Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDIL----PDSPTH 57 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG++ K H P SL+ ++ E+L F RI +K+ + + E KIDG Sbjct: 58 RVGGKILEGFEKYPHQYPLFSLQDAFSREELIAFDQRI-----RKEFPQVSYLCELKIDG 112 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I++ YEKG V A RGDG GE+++ ++ + I +L+L P I VRGE Y+ K Sbjct: 113 LSISLTYEKGILVAGATRGDGSVGENITENLKRVKDI--LLTLKEPLDITVRGECYMPKA 170 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A+N G +ANPRNAA+G LR+L+ + R L F++ +++ + Q Sbjct: 171 SFDAVNQLRQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPTQVGS--QE 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 +L K+ LGF VN A++ + + ++ R +L Y+IDG+V KV++ ++Q++L Sbjct: 229 AVLNKLADLGFSVNPTHILADSIEAVWEFIEKIAQERDSLAYEIDGIVIKVNDLAVQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++P+W I++KF ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR D V+V +AG++IP V+ ++ ++R + + PS CP Sbjct: 349 VDYI-----------AEKDIRQKDTVIVYKAGDIIPAVLRVVDSKRVSE-EHLEIPSHCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C+S +V + A RC L C AQ E L HF SRDA NI GLG ++ F Sbjct: 397 SCESELVHFEDE------VALRCINPL-CPAQIKEGLIHFASRDAMNITGLGPAVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + D+ + R + ++EN F + S LY +I + S ER +F Sbjct: 450 AQ-------NLVKDVAGIYRLTVENLLELEN---FKEKSANKLYIAIQASKENSAERLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-VE 614 LGIRHVG++ +R L + + +Q IA + +G +IAQ++ Sbjct: 500 GLGIRHVGSKASRILLEKFHDIPKLSQASQEEIA----------AIDSIGTVIAQSLHTY 549 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F Q I E V+ + + + +V TG LQK+ R++A+E + LG Sbjct: 550 FEQEGSQILLAELQEAGVNLDYLGQKAAADAALSGMTVVLTGKLQKLTRNQAKEKLQSLG 609 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 A VS +S+KTD+++ G + GSKL KAQ+LG++I +E+ Sbjct: 610 ANVSGSVSKKTDLVVAGQDAGSKLAKAQELGIEIRDED 647 >gi|262282968|ref|ZP_06060735.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA] gi|262261220|gb|EEY79919.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA] Length = 652 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 229/685 (33%), Positives = 365/685 (53%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R ++ +P+ P P +++GG++ K H P Sbjct: 19 YYTKDAPSVSDSEYDQLYRELVSLEEQYPNEIL---PESPTHRVGGKVLDGFEKYQHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ +L F R+ +K+ + + E KIDG I++ YE G V A R Sbjct: 76 LYSLQDAFSRAELVAFDERV-----RKEFPEVSYLCELKIDGLSISLAYENGILVAGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+++ ++ + IP L+L P I VRGE Y+ K F A+N G +A Sbjct: 131 GDGSIGENITENLKRVKDIP--LTLPEPLTITVRGECYMPKASFDAVNQLRQENGEAEFA 188 Query: 215 NPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 NPRNAA+G LR+L+ + + + F TSE Q ++L+K+ LGF VN Sbjct: 189 NPRNAAAGTLRQLDTSVVAKRNLATFLYQEASPTSE---ATQEDVLEKLSQLGFSVNEKR 245 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 A+T + + ++ R LPY+IDG+V KV+ + Q++LG ++P+W I++KF Sbjct: 246 VLASTIDQVWDFIEKVGQERDKLPYEIDGIVIKVNHLAAQEELGFTVKAPKWAIAYKFPA 305 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI+ Sbjct: 306 EEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIR-----------E 354 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 +DIR D V+V +AG++IP V+ ++ ++R D + PS CP CQS ++ + Sbjct: 355 KDIRKDDTVIVYKAGDIIPAVLRVVESKRVSD-EHLDVPSQCPSCQSDLLHFEDE----- 408 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 A RC L C AQ +E L HF SRDA NI GLG ++ F + +R A I+ Sbjct: 409 -VALRCINPL-CPAQIMEGLAHFASRDAMNISGLGPAVVEKLFAKD----LVRDVAGIYR 462 Query: 513 LQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 L IE++L F + S LY++I ++ S E+ +F LGIRHVG++ +R Sbjct: 463 L---------SIEDLLQLENFKEKSANKLYNAIQASKSNSAEKLLFGLGIRHVGSKASRI 513 Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRNICAVEAL 628 L + + + AQ IA + +G +IA+++ ++ Q I E Sbjct: 514 LLEKFHDIPSLAQAEQEEIAS----------IDSLGMVIAKSLHSYFAQEGTQILLKE-- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 L+E ++ + V+++ + K +V TG L+ + R +A+E + +LGA V+ +S+KTD Sbjct: 562 LEEAGVNLAYLGEKVAADAVLSGKTVVLTGKLETLTRTQAKEKLLRLGANVAGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 ++I G + GSKL KAQ+LG++I +E Sbjct: 622 LVIAGVDAGSKLAKAQELGIEIQDE 646 >gi|319955749|ref|YP_004167016.1| DNA ligase [Cellulophaga algicola DSM 14237] gi|319424409|gb|ADV51518.1| DNA ligase [Cellulophaga algicola DSM 14237] Length = 666 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 227/709 (32%), Positives = 364/709 (51%), Gaps = 52/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++++++ +L + H+ YY P I D ++D + + P+ D P Sbjct: 2 ESKQKIEALRIGLREHNYNYYVLDTPTISDYDFDMQLKELQDLEEKHPEFY---DATSPS 58 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + + + H SL+ ++ EDL ++ RI R D + FT E K D Sbjct: 59 LRVGGMVTKNFKTIVHDSRMYSLDNSYSKEDLEEWEKRIQR---NLGDVPVAFTCELKYD 115 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I+I YE G+ V A RGDG G+DV+ I+ I +IP L + P ++RGE+ + Sbjct: 116 GASISITYENGQLVRALTRGDGFQGDDVTNNIKTIKSIPLQLKGDYPPKFDIRGEIVLPF 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-GKTSEIFAKG 253 F +N E I G PY NPRN ASG L+ + + R L ++G+ G+ + I + Sbjct: 176 EGFAKMNAERIENGEDPYMNPRNTASGSLKLQDSALVAQRPLECLLYGIVGEKTGI--ES 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q++ML+K R GF V + + ++++ R LPY+ DG+V KV+ Q+ Sbjct: 234 QFQMLEKARVWGFKVPTVAQLCKSTDEVMAFVEYWDIHRHELPYETDGVVIKVNSLQYQE 293 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG ++SPRW +++KF +Q +T L +I Q+GRTG +TPVA L PV + G + A+L Sbjct: 294 ELGYTSKSPRWAMAYKFKAEQVATLLNEITYQVGRTGAITPVANLVPVLLAGTTVKRASL 353 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I DIR GD V V++ GE+IPK+V + +R ++ P + Sbjct: 354 HNADQIAKF-----------DIREGDTVFVEKGGEIIPKIVGVDFAQRPSNSVPTKYIDH 402 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + + R + A H C C Q R++H++SR A +IEGLG + + Sbjct: 403 CPECNAELER------AEGDAKHFCPNFYGCPPQITGRIQHYISRKAMDIEGLGGETVAL 456 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 +K + I+ AD++TL + Q +E + G S NL + + +I ER Sbjct: 457 LYKEQ----LIKNYADLYTLTKEQ---VMPLERMAG---KSAENLVNGVKASVSIPFERV 506 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VG +A+ LAK Y NI A L++V +G+ IA ++V Sbjct: 507 LFALGIRFVGETVAKKLAKAY----------KNIDALKVASVEELVKVDEIGERIANSVV 556 Query: 614 EFYQNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 EF+QN N +E L + S + E N + E++ + V +G +K+ R + ++ + Sbjct: 557 EFFQNETNQETIERLKSYGVQFELSADKLE-NQTEELKGQIFVVSGVFEKVSRDELKKLI 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G V + +S KT ++ GD G SK KA+ LGV I++E++FL LL Sbjct: 616 EDNGGKVGSSVSSKTTFLVAGDKMGPSKRTKAESLGVAIISEDEFLALL 664 >gi|15807063|ref|NP_295792.1| DNA ligase [Deinococcus radiodurans R1] gi|81550876|sp|Q9RSQ5|DNLJ_DEIRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|6459863|gb|AAF11619.1|AE002043_4 DNA ligase [Deinococcus radiodurans R1] Length = 700 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 219/703 (31%), Positives = 358/703 (50%), Gaps = 52/703 (7%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 +L E++ H+ YY+ P I D EYD L R + A P+ A D + P+ +GG Sbjct: 20 ALRDEVALHNRAYYEQDAPTIPDDEYDRLARELRELEAAHPEFA---DDHSPVQTVGGAP 76 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDGTMITI 141 + + VTH SL+ +++ ++LR + ++ R D + FT E KIDG + + Sbjct: 77 SSAFEPVTHPTQMTSLDNVFDDDELRDWQEKLARSLGLPLDTDDFTFTGELKIDGLSVNL 136 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 Y G+ +AA RG+G GE V+A + IP IP+ L + +EVRGEVY+S+ DF A Sbjct: 137 YYLDGELQWAATRGNGRVGEIVTAQVLTIPDIPQKLE-GLKGELEVRGEVYLSRADFAAF 195 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 N + +G NPRN A+G LR+ +P TR+L ++ +GK + A+ Q+E+L+ Sbjct: 196 NAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRHLKAILYAVGKRDGVPARTQWEVLEW 255 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + GFP + Y+ M + +D DG V K+D S Q++ G +R Sbjct: 256 LSAQGFPTSRSSEHLRGIAAAADYHARMIRAHADFEFDADGTVLKLDSLSQQEEAGFTSR 315 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PRW I++KF ++ T L I + +GRTG L P+A L P I G+ ++ ATLHNEDYI+ Sbjct: 316 APRWAIAYKFPVEEVETVLESITVNVGRTGKLAPLAHLSPRLIEGSTVSKATLHNEDYIR 375 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 + D+RVGD VLV+++G VIP+++ ++ ++R DA PF FP+ CP+C Sbjct: 376 DM-----------DLRVGDTVLVRKSGGVIPQIMRVLPDKRPADAAPFEFPTHCPVCGHE 424 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 VR A+ AC AQ ER+++FVSR A ++ G+G++ + Sbjct: 425 AVRAEGD-------ANTYCPNPACPAQSFERIRYFVSRGAMDVRGIGEKLVTQLLHE--- 474 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 I A ++TL S ++ + G+ N+ + + L R I +LG+ Sbjct: 475 -GLIHDAAGLYTL------SAEQLAGLERGGEKKAGNILGQLEASKTKPLWRLINALGMS 527 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP- 619 HVG A++LA+ + + + I VP +G IIAQ++ +P Sbjct: 528 HVGQRNAQALARAFGTLEGLLAATPEQIEA----------VPGLGGIIAQSVTASLADPA 577 Query: 620 -RNICA-VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 R++ A ++A V+P E + ++ V TG L + R + + G V Sbjct: 578 MRDLIARLQA--SGVAPQA--EEVTRTDQLSGLNFVLTGALSR-PREVIKAELEAAGGRV 632 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +++KT ++ G++ GSKL +A +LGV +++E LL + Sbjct: 633 TGSVTKKTSYLVAGEDAGSKLARAGELGVPVLDEAGLAALLAE 675 >gi|86131748|ref|ZP_01050345.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134] gi|85817570|gb|EAQ38744.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134] Length = 664 Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 232/718 (32%), Positives = 375/718 (52%), Gaps = 69/718 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IE+ ++ L QE+ H+ YY P I D E+D + A+ A P +DP Sbjct: 1 MTIEE---QILQLRQELREHNYNYYTLDTPTISDFEFDKKLEQLKALELANP---AYDDP 54 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P +++GG + + + H SL+ ++ EDL + R+ +K D + +T E Sbjct: 55 NSPTHRVGGAVTKNFETIVHEHRMYSLDNSYSKEDLEDWEARV----KKMVDGEVHYTCE 110 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I++ YE G+ + A RGDG G+DV+ I+ I ++P L + P ++RGE+ Sbjct: 111 LKYDGASISLTYENGELLRAVTRGDGLQGDDVTTNIKTIKSVPLKLKGDYPPKFDIRGEI 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR------YLNFFVHGLGK 245 + + F A+N E +G + Y NPRN ASG L+ + ++ + N + LG Sbjct: 171 VLPWDGFHAMNAEREELGFELYRNPRNTASGSLKLQDSAEVAKRPLQCLLYNITGNNLGI 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 T++I E LQK R GF V + A + ++ + N R LPY+ DG+V K Sbjct: 231 TTQI------ESLQKARDWGFMVPDAAVLAKSIDEVLDFINHWDKARHDLPYETDGVVVK 284 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ Q++LG A++PRW +++KF +Q STRL +I Q+GRTG +TPVA LEPV + G Sbjct: 285 VNGLQQQEELGYTAKAPRWAMAYKFKAEQVSTRLREITYQVGRTGAITPVANLEPVELAG 344 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + A+LHN D I+ L DIR GD V V++ GE+IPK++ + + +R D+ Sbjct: 345 TTVKRASLHNADQIERL-----------DIREGDEVFVEKGGEIIPKIIAVDLTKRPADS 393 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +P + + CP C +++VR K G+ A H C + C Q + R++H++SR A +I+G Sbjct: 394 EPTDYIAECPECDTQLVR----KEGE--AQHYCPNDMGCPPQIIGRIQHYISRKAMDIDG 447 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + + I AD++ L Q ++ S NL + + Sbjct: 448 LGGETVALLVNE----GLILNYADLYELTVAQLLPLERM------AQKSAENLVNGVQAS 497 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 I E+ +F LGIR+VG +A+ LAK+Y S I+ II+ ++ L+ V +G Sbjct: 498 VKIPFEKVLFGLGIRYVGETVAKKLAKHYKS-------IDAIISATEEE---LVAVDEIG 547 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 IA+++V F+ +I +E L E+S N S + K V +G + Sbjct: 548 IKIAESVVAFFAKAEHIALIERLRSYGVQLEIS---AEKLANQSDVLAGKTFVVSGVFE- 603 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 + R+ ++ + G VS+ +S KT ++ G+ G SKLEKAQ+LG+ I++E +FL L Sbjct: 604 MPRNDLKKLIEDNGGKVSSSISSKTSYLVAGEKMGPSKLEKAQKLGITIISEIEFLAL 661 >gi|302558233|ref|ZP_07310575.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000] gi|302475851|gb|EFL38944.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000] Length = 731 Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 236/749 (31%), Positives = 376/749 (50%), Gaps = 90/749 (12%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR++ + L + I H YY P+I D+++D R + + P+ P Sbjct: 15 EAREKHAKLAERIEEHRFRYYVNDAPVISDADFD---RLLRELEALEEEHPELRTPDSPT 71 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G V H LSL+ +N +DL ++ RI+R + F E K+D Sbjct: 72 QKVAGAYETEFTSVEHRSRMLSLDNTFNDDDLAAWVERIHR---ELGTQKYHFLCELKVD 128 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE+G+ V AA RGDG +GED++ +R I IP R+ +P+++E+RGEVY Sbjct: 129 GLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLTGDEVPDVVEIRGEVYFP 188 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG-----KTSE 248 F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G + Sbjct: 189 MEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGVLEGYRGMT 248 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYK 305 ++G YE+L R G P + R + G+ ++YY E R ++ ++IDG+V K Sbjct: 249 RLSQG-YELL---RTWGLPTSPHNRVVDDLEGVREFIAYYGEN---RHSVAHEIDGVVVK 301 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +DE LQ +LG +R+PRW I++K+A ++ +TRL++I + +GRTG +TP A++EPV + G Sbjct: 302 LDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTRLVNIRVGVGRTGRVTPYAQVEPVTVAG 361 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + + ATLHN+D +K + + +GD V++++AG+VIP+++ + + R Sbjct: 362 SEVEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSE 410 Query: 426 QPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + F P+ CP C + L P K G + RC C AQ ERL + R A +IE Sbjct: 411 REFVMPAECPECGT----PLRPMKEGDV--DLRCPNARTCPAQLRERLFYLAGRKALDIE 464 Query: 485 GLG---KQQLDFFFKSEDPAFSIRIPADIFTL--------------------QRRQQTST 521 G L + E+P +R D+F L +R +T Sbjct: 465 HFGYVAAAALTRPLEPEEP--PLRDEGDLFDLTVDQLLPIKAYVLDQDSGLPKRDPKTGE 522 Query: 522 TKIENIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY 577 KI + G + + +I + L R + SL IRHVG A +LA+ + S Sbjct: 523 EKIATVFANQEGEPRKNAVAMLANIAAAKERPLARVLTSLSIRHVGPVAAEALAREFRSI 582 Query: 578 QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 Q +A VG IIA ++ +++ + ++++ + Sbjct: 583 DRIEQATEEELAATEG----------VGGIIAASLKQWFAEDWH----REIIRKWKTAGV 628 Query: 638 RHEKNVSSE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 R E S E +E +V TGTL+ R A+E + GA V+ +S+KT ++VG Sbjct: 629 RMEDERSGEDEGPRPLEGLTVVVTGTLENFTRDGAKEALQSQGAKVTGSVSKKTAFVVVG 688 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 DNPGSK +KA QL V ++NE+ F LL+Q Sbjct: 689 DNPGSKYDKAMQLKVPVLNEDGFNVLLEQ 717 >gi|148240764|ref|YP_001226151.1| NAD-dependent DNA ligase LigA [Synechococcus sp. WH 7803] gi|166216252|sp|A5GPI9|DNLJ_SYNPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147849303|emb|CAK24854.1| NAD-dependent DNA ligase [Synechococcus sp. WH 7803] Length = 698 Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 228/736 (30%), Positives = 371/736 (50%), Gaps = 59/736 (8%) Query: 12 LSIEQARKELSS-LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +SI Q +E ++ L Q ++ YY P + DS YD L R + A P+L ++ Sbjct: 1 MSIPQGLQERAAELRQLLNRAAHAYYVLDAPDLEDSVYDRLYRELLDLEAAHPELVEADS 60 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----S 125 P ++GG VTH IP SL+ ++ E+LR + TR+ + ++ + + Sbjct: 61 PT---QRVGGSPAEGFRSVTHRIPLFSLDNAFSAEELRGWYTRLLKVLDREPPSGSPLPA 117 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI- 184 + E KIDG + + Y+ G V AA RGDG GED++A +R I +IP L L+ P Sbjct: 118 LAMVGELKIDGNALALSYDNGVLVRAATRGDGDQGEDITANVRTIASIPLRLHLDPPPAW 177 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243 +EVRGE I N F A+N E A +ANPRNA +G LR+L+P + R L+FF + L Sbjct: 178 VEVRGEALIPDNTFAAINSERAARDEPLFANPRNACAGTLRQLDPKVVAARRLDFFAYTL 237 Query: 244 GKTSEIFAK---GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + + Q+E L+ + GF VN + ++ + S R L Y D Sbjct: 238 HLPEDWSGERPTSQWESLRWLEDAGFRVNPNAALLPDVDSVEQFFGDWDSRRHDLNYATD 297 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K+++ LQ G ++PRW I+ K+ ++A +RLL + Q+GRTG++TPVA EP Sbjct: 298 GVVVKLNDLRLQDAAGFTQKAPRWAIALKYPAEEAPSRLLKLTCQVGRTGVVTPVAEFEP 357 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V++ G ++ ATLHN D ++ L D+ GD ++V++AGE+IP+V+ ++ Sbjct: 358 VSLAGTSVSRATLHNADRLQEL-----------DLHSGDTIIVRKAGEIIPEVLRVLPEL 406 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R A P P CP C S +VR+ +G+ AA RC +C A L+H+VS+ A Sbjct: 407 RPEGALPLELPQQCPSCGSDLVRE----SGE--AATRCVNS-SCPAILSGALRHWVSKGA 459 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +++GLG + ++ + +R AD++ L TS ++ G+ S NL Sbjct: 460 LDVDGLGSKLIEQLVERG----LVRSIADLYRLDTALLTSLERM------GEKSAGNLVA 509 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ + R R ++ LGI HVG A++LA + + A D Sbjct: 510 ALAQSRTQPWSRQLYGLGIHHVGEVNAKALASAFADAHSLADAAVQRPEAITD------- 562 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK---------NVSSEIENKK 651 + +G IAQ++ +++ N ++ L+ V ++ ++ N + + Sbjct: 563 LHGIGPEIAQSLQQWFNTSANQDLLQQ-LRAVGLTLAASDQERQALADRNNGKGHLNGQT 621 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 V TGTL + R +AQ + G VS +S+KT ++ GD GSKL+KA LGV +++E Sbjct: 622 FVLTGTLPSLSRSQAQALIEGAGGKVSGSVSKKTSFVVAGDEAGSKLDKANTLGVSVLDE 681 Query: 712 EQFLFLLQQYNTTLRI 727 + L+Q T+ + Sbjct: 682 AALMLLIQNSADTIHL 697 >gi|29829290|ref|NP_823924.1| NAD-dependent DNA ligase LigA [Streptomyces avermitilis MA-4680] gi|81719851|sp|Q82JK7|DNLJ_STRAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29606397|dbj|BAC70459.1| putative DNA ligase [Streptomyces avermitilis MA-4680] Length = 730 Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 230/742 (30%), Positives = 370/742 (49%), Gaps = 77/742 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR++ + L ++I H YY P++ D+E+D L R +A+ +P+L P+ P Sbjct: 15 EAREKHAQLAEQIEEHRFRYYVKDAPVVSDAEFDTLLRSLEALEEEYPEL---RTPDSPT 71 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G V H LSL+ ++ L + R+ + D F E K+D Sbjct: 72 QKVAGGYETEFTAVQHRERMLSLDNAFDDLGLAAWAERVAKDVGTSD---YHFLCELKVD 128 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G+ AA RGDG +GED++ +R I IP R+ IP+++E+RGEVY Sbjct: 129 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRIPDLVEIRGEVYFP 188 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 189 MEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGARQGFDIDR 248 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + +R G P R + G+ ++YY E R ++ ++IDG+V K+DE Sbjct: 249 LSQAYELLREWGLPTTRYARVVDDLDGVREFIAYYGEN---RHSVEHEIDGVVVKLDEIP 305 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + Sbjct: 306 LQGRLGSTSRAPRWAIAWKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 365 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+D +K + + +GD V++++AG+VIP+++ +V+ R + F Sbjct: 366 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTERAFVM 414 Query: 431 PSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + L P K G + RC C AQ ERL + R + +IE G Sbjct: 415 PAECPECGT----PLAPAKEGDV--DLRCPNARTCPAQLRERLFYLAGRKSLDIEQFGYV 468 Query: 490 QLDFFFKSEDPA----------FSIRI----PADIFTL-------QRRQQTSTTKIENIL 528 K +PA F + I P + L +R +T K+ + Sbjct: 469 AAAALTKPLEPAEPPLLDEGDLFDLTIERLLPIKAYVLDQDSGLPKRDPKTGEEKVATVF 528 Query: 529 ----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 G + ++ D+I + L R + L IRHVG A +LA+ + S Q Sbjct: 529 ANQQGEPRKNAISMLDNIAAAKERPLARILTGLSIRHVGPVAAEALARAFRSIDRIDQAT 588 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 + + VG I+A A+ +++ + ++++ + R E S Sbjct: 589 EEELKDTDG----------VGPIVAAAVKQWFAEDWH----REIIRKWKAAGVRMEDERS 634 Query: 645 SE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 E +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGSK Sbjct: 635 GEDEGPRPLEGLTVVVTGTLEHHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKY 694 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 +KA QL V ++NE F LL+Q Sbjct: 695 DKAMQLKVPVLNEAGFAVLLEQ 716 >gi|312867643|ref|ZP_07727849.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405] gi|311096706|gb|EFQ54944.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405] Length = 652 Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 228/699 (32%), Positives = 362/699 (51%), Gaps = 64/699 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL L +Y YY P + DSEYD L R + A PD P P +++ Sbjct: 6 KELVELLNRYAYE---YYTKDTPSVSDSEYDQLYRELVELETAHPDEIL---PESPTHRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ +K+ SI + E KIDG Sbjct: 60 GGVVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRV-----RKEFPSISYVCELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G V A RGDG GED++ ++ + IP VL P I VRGE Y+ + F Sbjct: 115 ISLTYENGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPE--PVNITVRGECYMPRASF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N G +ANPRNAA+G LR+L+ T I N + S Q +L Sbjct: 173 DRVNQIRQENGEPEFANPRNAAAGTLRQLD-TKIVAKRNLATFLYQEVSPTDQSSQEGVL 231 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 +K+ LGF VN A I + ++ +R LPYDIDG+V KV++ ++Q++LG Sbjct: 232 EKLARLGFVVNQERVLAEDMEQIWDFIQKVAQLREDLPYDIDGIVIKVNDLAVQEELGFT 291 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++P+W +++KF ++ ++L +D +GRTG++TP A L PV + G ++ ATLHN DY Sbjct: 292 VKAPKWAVAYKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDY 351 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I +DI D V+V +AG++IP V+ ++ ++R D Q + P+ CP CQ Sbjct: 352 I-----------AEKDIHQNDTVIVYKAGDIIPAVLRVVKDKRVSD-QALAIPTHCPSCQ 399 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS- 497 S ++ + A RC L C AQ E L HF SRDA NI GLG ++ F + Sbjct: 400 SELLHFEDE------VALRCINPL-CPAQIKEGLNHFASRDAMNITGLGPAVVEKLFAAQ 452 Query: 498 --EDPAFSIRIPA-DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ED A R+ D+ TL+ GF + S LY++I + S E+ + Sbjct: 453 LVEDVAGIYRLTVEDLLTLE--------------GFKEKSAEKLYEAIQASKENSAEKLL 498 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIRHVG++++ Q QE +++ D + + +G ++A+++ Sbjct: 499 FGLGIRHVGSKVS----------QILLQEFHDLDQLATADPERIASIDSLGMVVAESLKR 548 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ + ++ LKE ++ + V+++ + +V TG L+++ R +A+ + Sbjct: 549 YFAQEGSKRLLQE-LKEAGVNMDYLGEKVAADAALSGMTVVLTGKLERLTRSEAKAKLES 607 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 LGA V+ +S+KTD+++ G + GSKL KAQ+LG+++ +E Sbjct: 608 LGAKVTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDE 646 >gi|169350953|ref|ZP_02867891.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552] gi|169292015|gb|EDS74148.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552] Length = 682 Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 233/707 (32%), Positives = 378/707 (53%), Gaps = 59/707 (8%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + L+Q+I YH+D YY P I D EYD + + A+ P+ +ED P K+GGE Sbjct: 26 NELKQKIMYHNDRYYNQDDPEISDYEYDMMMQELKALEKKHPEYI-TED--SPTQKVGGE 82 Query: 82 MNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 V H++P LSL+ +++ E++ +F+ + ++ DD + F +E KIDG + Sbjct: 83 AKREAGVLVRHNVPMLSLQDVFSKEEVEQFVKDM---QEQLDDPT--FVVEYKIDGLSLA 137 Query: 141 IRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +RY GK A RGDG GEDV+A + I + + L I E +EVRGEVY++ F Sbjct: 138 LRYVNGKLDVAITRGDGILQGEDVTANAKVIKDVKKKLKEPI-EYLEVRGEVYMTNEAFN 196 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL----GKTSEIFAKG 253 +N+ G+K +ANPRN A+G LR+L+ + IT R L+ FV + GK ++G Sbjct: 197 QVNEMQEIKGKKTFANPRNCAAGTLRQLD-SKITKERNLSMFVFNIQDVRGKQFVSHSEG 255 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 YE L+K G V + T + E+ R L YDIDG V K+D F ++ Sbjct: 256 -YEYLKKQ---GIKVIENYKICKTADEVWQAIEEIGENRDKLKYDIDGAVVKIDNFEDRR 311 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+ PRW I++K+ ++ T+LL+I++ +GRTG +TP A EP+ + G ++ ATL Sbjct: 312 KLGNTAKVPRWAIAYKYPPEEKETKLLEIELSVGRTGRITPTAIFEPIRLCGTTVSRATL 371 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+D+I L DIR+GD ++V ++GE+IPKV ++ +R ++ P+ Sbjct: 372 HNQDFIDDL-----------DIRIGDTIVVYKSGEIIPKVKRVVKEKRPTNSVPYVIGDR 420 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C + +R+ N A +CT +C ++ + + +FV RDA +I+G G ++ Sbjct: 421 CPVCNAPAIREGNN------ADIKCTNH-SCPSKLVRNIVNFVGRDAMDIKGFGLAYVET 473 Query: 494 FFKSEDPAFSIRIPADIFTL-QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 I+ +DI++L +RQ+ K+ ++ S NL ++I K +N + Sbjct: 474 LV----SLGYIKDLSDIYSLIGKRQELLDKKVIGLVK----STDNLLNAIEKSKNNDASK 525 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + SLGI +VG A++L K + S N N + LI V +GDI A AI Sbjct: 526 LLTSLGISNVGKSAAKNLMKKFKSIDNLM----------NASYAQLIEVNDIGDISAMAI 575 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + +++NP N ++ L +++ + V TGTL + R +A + + + Sbjct: 576 INYFKNPDNRIVIDKLKNYGVNMKIIEDQDSDDRFDGMTFVVTGTLPTLSRKEASDIIEK 635 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS +S+KT+ ++ G+N GSKL KAQ L VKI++EE +++ Sbjct: 636 HGGKVSGSVSKKTNYLLAGENAGSKLIKAQSLNVKIIDEETLFEMVK 682 >gi|269123713|ref|YP_003306290.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112] gi|268315039|gb|ACZ01413.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112] Length = 675 Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 221/694 (31%), Positives = 384/694 (55%), Gaps = 49/694 (7%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 +I ++ YY + +I D EYDAL ++ + + FP+L N P IGG+ + Sbjct: 22 DIEIYNHHYYNLDESLITDREYDALLKKIELLEKEFPELKL---KNSPTEIIGGKSSDKF 78 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 KV H LSL ++++DL+ F R+ +K+ N++ + LE K+DG I++ YEKG Sbjct: 79 KKVKHKKAMLSLANTYSMDDLKAFDQRV----KKEVGNNVEYVLELKLDGLSISLIYEKG 134 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 K + A RGDG GEDV+ + I TIP++L I +EVRGE+ + +F +N E Sbjct: 135 KLIQAVTRGDGSVGEDVTENVIQISTIPKILKDEID--LEVRGEIVLPLKEFERINRERE 192 Query: 207 AVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 G +ANPRN A+G +R+L+ + + R L+ +++ L + + Q E ++ ++ LG Sbjct: 193 ENGETIFANPRNVAAGTIRQLDYSIVKDRNLDCYLYYLVDSEKYGLNTQLESIEYIQKLG 252 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + + + + R L Y+ DGLV KV+E+ L LG A+SPRW Sbjct: 253 FKTTGIFTKCSKIEDLEKEIEYWDNNRKKLEYETDGLVIKVNEYYLHNLLGYTAKSPRWA 312 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 +++KF +Q T++LDI Q+GRTG++TPVA LEPV+I G+++ A+LHN D IK L Sbjct: 313 MAYKFKAEQKETKMLDISFQVGRTGVITPVAELEPVHISGSVVRRASLHNIDEIKRL--- 369 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +++GD V+V++A E+IP+VV +++ +R + + CP C + + ++ Sbjct: 370 --------GLKIGDIVIVEKAAEIIPQVVKVLLEKRSGNEKEIEIIDKCPSCNNTIFKE- 420 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 G++ A +C C + ++++FVSRDA NI+G G + +D F D + IR Sbjct: 421 ---EGQV--ALKCKNP-NCVEKLKRKIEYFVSRDALNIQGFGNKLVDKFV---DLGY-IR 470 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 DIF L+ ++ ++ N+ G S+ L D+I+K ++I E+ +SLGI +VG Sbjct: 471 SIIDIFKLKNHKE----ELINLDKMGTKSIEKLLDNIDKAKDIGFEKLFYSLGIEYVGKT 526 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 ++ + ++ S I NII N L+ + +G+ ++ +I ++++ NI + Sbjct: 527 TSKLVVSHFGS-------IENII---NASLEELVLIEGIGEKVSLSIYNYFKDNENISLI 576 Query: 626 EALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 +K + + ++ + ++ I NKK + TG R + ++ + + G + + +++ Sbjct: 577 NE-IKNIGFDLSFEKEQILNNNFITNKKFLATGKFVNYSREEIKKVIEKNGGIYLSSVNK 635 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 D +I+G+ GSKLEKA++LGV+I+ EE+FL L Sbjct: 636 NLDYLIIGEKAGSKLEKAEKLGVRIITEEEFLKL 669 >gi|78187553|ref|YP_375596.1| DNA ligase (NAD+) [Chlorobium luteolum DSM 273] gi|123743616|sp|Q3B278|DNLJ_PELLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78167455|gb|ABB24553.1| DNA ligase (NAD+) [Chlorobium luteolum DSM 273] Length = 677 Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 228/704 (32%), Positives = 363/704 (51%), Gaps = 66/704 (9%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 H+ YY +KP I D ++D L R + P+L P+ P ++GG + V Sbjct: 24 HNHLYYVEAKPEISDYDFDRLLLRLIELEREHPELV---TPDSPTGRVGGAVTREFPPVE 80 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 H P LSL ++I ++ +F R+ R + + E K DG +++ Y G V Sbjct: 81 HREPMLSLSNTYSIGEVEEFSARVGRLLEAEGIRDRDMVAELKFDGVAVSLLYRDGVLVR 140 Query: 151 AALRGDGHSGEDVSACIRAIPTIP-RVLSLNIP------EIIEVRGEVYISKNDFLALND 203 A RG+G G+D++ +R +PT+P R+ +L+ P +EVRGEV++ K DF ALND Sbjct: 141 GATRGNGRRGDDITVNLRTVPTVPLRLQTLDTPFSLGEGREVEVRGEVFMRKEDFTALND 200 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262 R +ANPRNA +G L+ + ++ R L F + L + + LQ + Sbjct: 201 TRPEEDR--FANPRNATAGTLKLQDSAEVAVRRLWFVAYYLDGIQDPDTP-HFHRLQLLE 257 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 GF R I ++ R LPY+ DG+V K+++ K LG ++SP Sbjct: 258 TAGFFTGGHYRLCKGMQEIAAFIARWNEERWHLPYETDGVVLKLNDVRQWKTLGATSKSP 317 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 RW I++K+ +QA+T L D+ Q+GR G +TPVA LEPV + G+ ++ +TLHN D ++ L Sbjct: 318 RWAIAYKYPAQQATTVLRDVVFQVGRLGTITPVAELEPVRLAGSTVSRSTLHNFDEMRRL 377 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 I +GDRV+++++GEVIPKV+ ++ R DA+ PS CP C + +V Sbjct: 378 -----------GIMIGDRVVIEKSGEVIPKVIRVVTEARPVDARLVELPSRCPACSTPIV 426 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---QQLDFFFKSED 499 R+ G++ C C AQ R+ HF SR+A +I+ LG+ +QL F D Sbjct: 427 RE----EGEV--GFYCPNEAGCPAQLKGRILHFASRNAMDIQNLGEALVEQLVAFGLVHD 480 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 P D++ LQ Q + N+ G S N+ ++++ R+ S R +F+LGI Sbjct: 481 -------PGDLYFLQEPQ------LRNLERMGPKSAQNVVRALDESRSQSYARLLFALGI 527 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 RHVG AR LA+ + S + +A D +G +IA++I E+++ P Sbjct: 528 RHVGQATARELARAFPSIEALEAASEEELADVAD----------IGPVIARSIREWFEAP 577 Query: 620 RNICAVEALLKEVS----PSIGRHEKN-VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 AV ALL+++ P K ++S E +VFTG L + R A E V + G Sbjct: 578 ----AVSALLEKLRDARLPLAAEDPKPLINSNFEGLSVVFTGALLRHDRQSASELVLERG 633 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + +S+KT +++ G GSKLEKA +LG+++++EE+F +L Sbjct: 634 GKIVSTVSKKTGLVVAGREAGSKLEKALKLGLRVISEEEFEAML 677 >gi|29346304|ref|NP_809807.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482] gi|253568276|ref|ZP_04845687.1| DNA ligase [Bacteroides sp. 1_1_6] gi|81445157|sp|Q8A9C1|DNLJ_BACTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|29338199|gb|AAO76001.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482] gi|251842349|gb|EES70429.1| DNA ligase [Bacteroides sp. 1_1_6] Length = 666 Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 233/713 (32%), Positives = 369/713 (51%), Gaps = 63/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L E+ H+ YY + P I D E+D R + A P+ +D N P + Sbjct: 4 KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEY---KDENSPTMR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++N + +V H P LSL ++ ++ F R+ +K + E K DGT Sbjct: 61 VGSDINKNFTQVAHKYPMLSLANTYSEGEVTDFYERV----RKALNEDFEICCEMKYDGT 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 I++ YE GK V A RGDG G+DV+ ++ I +IP VL N P E+RGE+ + Sbjct: 117 SISLTYEDGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMPWE 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQY 255 F LN E A +ANPRNAASG L+ N + + +R L+ +++ L + G Y Sbjct: 177 VFEELNREKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYL-LGDNLPCDGHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ+ GF +++ R+ T + + N R LP DG+V KV+ QK L Sbjct: 236 ENLQEAAKWGFKISDLTRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+ V + G ++ A+LHN Sbjct: 296 GFTAKSPRWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDAVQLSGTVVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF------S 429 D I+GL D+ +GD V V++ GE+IPK+ + DA+ F Sbjct: 356 ADIIEGL-----------DLHIGDMVYVEKGGEIIPKITGV-----DKDARSFMLGEKVR 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 F + CP C S+++R G+ AAH C AC Q +++HF+SR A NI+GLG + Sbjct: 400 FITNCPECGSKLIR----YEGE--AAHYCPNETACPPQIKGKIEHFISRKAMNIDGLGPE 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F++ I AD++ L+ I+ + G+ S N+ I + + + Sbjct: 454 TVDMFYR----LGLIHNTADLYELK------ADDIKGLDRMGEKSAENIITGIEQSKTVP 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER IF+LGIR VG +A+ +AK + Q D LI + +G+ IA Sbjct: 504 FERVIFALGIRFVGETVAKKIAKSFGDIDELRQA----------DLEKLISIDEIGEKIA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKA 666 ++I+ ++ N N V LKE + R E+++S ++ + +V +G R + Sbjct: 554 RSILLYFSNESNRELV-GRLKEAGLQLYRTEEDMSGYTDKLAGQSIVISGVFTHHSRDEY 612 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 ++ + + G +S KT I+ GDN G +KLEKA++LGV I++E++FL L+ Sbjct: 613 KDLIEKNGGKNVGSISAKTSFILAGDNMGPAKLEKAKKLGVTILSEDEFLKLI 665 >gi|308233598|ref|ZP_07664335.1| DNA ligase, NAD-dependent [Atopobium vaginae DSM 15829] gi|328944216|ref|ZP_08241680.1| DNA ligase [Atopobium vaginae DSM 15829] gi|327491135|gb|EGF22910.1| DNA ligase [Atopobium vaginae DSM 15829] Length = 792 Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 239/738 (32%), Positives = 371/738 (50%), Gaps = 68/738 (9%) Query: 7 IPIEA-LSIEQAR-KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 +P++ S+ +AR +EL L + YH YY P+I D+++D+ + + +P Sbjct: 74 VPVDTHASLPEARVRELRKL---LEYHAYRYYALDAPLITDNQFDSYLQELLHLEKTYPY 130 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L +D + ++IGG ++ +V H+ S++ N+E+L ++ + N Sbjct: 131 L---DDEHSYTHRIGGYVSQQFRRVAHAQRMYSMDDAMNLEELDAWLEKTDEALGSSPSN 187 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------- 177 + +T E KIDG + + Y G+ + AA RGDG GEDV+A + I +P L Sbjct: 188 PVAYTCELKIDGLGVALTYHNGQLLRAATRGDGSVGEDVTANVITIKDVPHTLLRDGLQK 247 Query: 178 --SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-- 233 + IEVRGEVY+ K+ F+ LN+ GR +ANPRNAA+G LR+ N IT Sbjct: 248 IANTGFGSDIEVRGEVYMPKHSFVRLNETADDEGRPTFANPRNAAAGSLRQKN-ARITAH 306 Query: 234 RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 R L F++ L + Q + L + GF VN ++ + Y RS Sbjct: 307 RDLETFIYALASRESLDVHTQTDFLAWLSSCGFSVNPHAQRCVCAQEVHDYCARALKNRS 366 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 +L YDIDG+V KVD F+ Q QLG AR+PRW I+ KF +Q T L +I IQ+GRTG+LT Sbjct: 367 SLDYDIDGVVVKVDSFAFQDQLGFTARAPRWAIAFKFPPEQKQTILREIRIQVGRTGVLT 426 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA +PV + G+ I ATLHN D ++ RD+RVGD ++V +AG+VIP+V Sbjct: 427 PVAEFDPVLVAGSTIARATLHNIDEVR-----------RRDVRVGDTIVVHKAGDVIPEV 475 Query: 414 VDIIVN----ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 V ++ H + P CP C + VVR+ + A+RC L C AQ Sbjct: 476 VGPVLEGDLAALHFARPVWDMPQTCPACGASVVREDDE------VAYRCV-SLDCPAQAS 528 Query: 470 ERLKHFVSRDAFNIEGLGKQQL-----DFFFKSEDPAFSIRIPADIFTLQRRQQTSTT-- 522 +RL H+ SR A +I+GLG + + + K + ++ +L + TT Sbjct: 529 QRLIHWCSRKAMDIDGLGSELITRLTEQGYVKDVADYYDKLSLENLSSLDTGRTYDTTNK 588 Query: 523 --KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580 K + + G + + +NK + L R +F LGIRHVGA +A + Y ++ Sbjct: 589 LHKQGDAIRVGKKIASKIIAQLNKSKQAGLARVLFGLGIRHVGASVAELIVATYPDLESL 648 Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK----EVSPSI 636 + + IA + VG IA ++V+F P+N+ E L++ V S Sbjct: 649 LRADKDEIA----------AIDGVGPKIAASLVDFLHMPQNM---EVLIRLQAAGVVLSA 695 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 + + + V TGTL+ + R A + + LGA VS +SRKT +I G+ GS Sbjct: 696 PEQKALLPQSLTGYTFVLTGTLEDLSRTAAGDALKALGAKVSGSVSRKTSFVIAGEQAGS 755 Query: 697 KLEKAQQLGVKIMNEEQF 714 KL+KA++LGV ++ ++ Sbjct: 756 KLDKARELGVCVIGRKEL 773 >gi|237802575|ref|YP_002887769.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/Jali20/OT] gi|231273809|emb|CAX10593.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/Jali20/OT] Length = 663 Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 234/704 (33%), Positives = 380/704 (53%), Gaps = 53/704 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL- 75 +R + +L E+ HD YY ++P I D YD R I P+ S P L Sbjct: 5 SRDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ G+ + V HS P LS+ ++++++L +F +R +K S ++LE KID Sbjct: 65 DRPSGQFPV----VPHSSPMLSIANVYSLQELEEFFSRT----EKLLGYSPGYSLELKID 116 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + IRYEK F A RG+G GED++A + I ++P L PE +EVRGEV++S Sbjct: 117 GIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSY 176 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 F LN G+ +ANPRNAA G L+ L+ + R L+ V+GL ++ + Sbjct: 177 EAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ GF V +Q + +V E++ +R+ LP IDG+V KVD + Q + Sbjct: 235 FENLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDR 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+ Sbjct: 295 LGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLY 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D I+ +DIR+GD V V++ GEVIPK+V I + +R +++P+ PS C Sbjct: 355 NQDEIE-----------KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C VV++ + RC L CS LE++ F S+ A NI+ LG++ + Sbjct: 404 PVCHEPVVKE--------KVSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ I +DIF L + ++ + GF D S+ NL SI + ++L+R + Sbjct: 455 FE----VGLISSCSDIFALTEKD------LKQVPGFKDRSIQNLLASIAGAKKVTLDRLL 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +L I VG+ A +LA ++ + ++ +I + D+ L+ + +G +A +IV Sbjct: 505 TALSIPFVGSSGAIALADHFGT-------LDKVIEASLDE---LMSIEGIGPKVAASIVA 554 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ N + ++E+ + + + + ++ K V TGTLQ++ R +A+E + LG Sbjct: 555 FFSKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLG 613 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS+ +S+ T +I G G KL+KAQ LG+ I NE + L +L Sbjct: 614 GKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLIIL 657 >gi|240168924|ref|ZP_04747583.1| NAD-dependent DNA ligase LigA [Mycobacterium kansasii ATCC 12478] Length = 683 Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 228/706 (32%), Positives = 361/706 (51%), Gaps = 49/706 (6%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +++ H YY PII D+E+D L RR + + +P+L P+ P +GG Sbjct: 8 LAEQVREHQFRYYVRDAPIITDAEFDELLRRLEVLEEQYPEL---RTPDSPTQLVGGAGF 64 Query: 84 LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + F+ V H LSL+ ++ +L + R++ + D + + T E KIDG +++ Sbjct: 65 ATEFEPVEHLERMLSLDNAFSAAELAAWAARVH---AEVGDAASYLT-ELKIDGVALSLV 120 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKNDF 198 Y++G+ A+ RGDG +GEDV+ R I +P LS + +PE++EVRGEV+ DF Sbjct: 121 YQQGRLTRASTRGDGRTGEDVTLNARTIDDVPERLSPSDDYPVPEVLEVRGEVFFRVADF 180 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG T ++ Sbjct: 181 QALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHTQGFRPASLHQA 240 Query: 258 LQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +R G PV+ N G+ + Y+ E R + ++IDG+V KVDE +LQ++ Sbjct: 241 YLALRAWGLPVSEHTTLVNDMAGVQERIDYWGEH---RHEVDHEIDGVVIKVDEVALQRR 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + ATLH Sbjct: 298 LGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVAQATLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N +K R G + +GD V++++AG+VIP+V+ +V+ R + F P+ C Sbjct: 358 NASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTC 406 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + + + K G A RC C AQ ER+ H SR A +IE LG + Sbjct: 407 PECGTVLAPE---KEGD--ADIRCPNSQRCPAQLRERVFHVASRSALDIEVLGYEAAVAL 461 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + A I D+F L T G + L +++K + L R + Sbjct: 462 LQ----AGVIASEGDLFALTEDDLLRTELFRTKAGGLSANGKRLLANLDKAKAAPLWRVL 517 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +L IRHVG AR+LA + + + A N L V VG IA A+ E Sbjct: 518 VALSIRHVGPTAARALATEFGTLEAIA----------NASTEQLAAVEGVGPTIAAAVSE 567 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++ + V+ +++V + +V TG+L R +A+E + G Sbjct: 568 WFTVDWHREIVDKWRAAGVRMADERDESVPRTLAGLTVVVTGSLAGFSRDEAKEAIVARG 627 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +S+KT ++ GD+PGSK +KA +LGV I++E+ F LL Q Sbjct: 628 GKAAGSVSKKTSYVVAGDSPGSKYDKAVELGVPILDEDGFRELLAQ 673 >gi|159904348|ref|YP_001551692.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT 9211] gi|254781392|sp|A9BDC5|DNLJ_PROM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|159889524|gb|ABX09738.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Prochlorococcus marinus str. MIT 9211] Length = 697 Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 231/735 (31%), Positives = 384/735 (52%), Gaps = 66/735 (8%) Query: 14 IEQARKELS----SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +EQ LS L + ++ + YY P++ D+ YD L R I P L ++ Sbjct: 1 MEQNSSNLSKRSFELRKLLNRANHAYYVLDTPLMEDTVYDRLYRELLNIEKNHPSLITAD 60 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----N 124 P+ ++G KV H IP +SL+ +N E+L+ + RI + +K++ Sbjct: 61 SPS---QRLGSTPAKEFVKVEHKIPLMSLDNAFNFEELQDWDLRIRKLLNQKNNFGILKT 117 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPE 183 SI F E KIDG+ + + Y G V AA RGDG +GE+++A ++ I +IP L + N P Sbjct: 118 SIDFACELKIDGSALALSYANGVLVQAATRGDGVAGEEITANVKTITSIPLSLDIENPPS 177 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242 +EVRGE ++ K F +N +ANPRNA +G LR+L+P + +R L+FF + Sbjct: 178 WLEVRGEAFLPKQTFDGINLLRKQQREALFANPRNACAGTLRQLDPQIVASRQLDFFAYK 237 Query: 243 LGKTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + + +G Q L+ ++ GF VN + + H + S+++ + R Sbjct: 238 MYLPKDWDPQGENIHQPEAQDAALKWLKKAGFKVNPNTKIFKSLHEVQSFFDIWEKKRHK 297 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LPY DG+V KV+ F LQ+ LG +SPRW I+ K+ ++A T+L+++ Q+GRTG +TP Sbjct: 298 LPYTTDGVVVKVNNFKLQEMLGVTQKSPRWAIALKYPAEEAPTKLINLSYQVGRTGTVTP 357 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA EP+ + G ++ ATLHN D ++ LD + D ++V++AGE+IP+VV Sbjct: 358 VAEFEPIPLAGTIVRKATLHNADRLQSLDLHNE-----------DTIVVRKAGEIIPEVV 406 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 ++ R ++ PS CP C ++VR G AA +C L C A L+H Sbjct: 407 CVLKELRPQNSTRLYLPSNCPECDEKLVR------GTDQAATKCVNNL-CPAIIQGALRH 459 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 +VS+ A NI+G+G + ++ + IP D++ L + ++ G+ S Sbjct: 460 WVSKKAMNIDGVGSKVIEQLV---NKGIVKSIP-DLYELNYQMLFGLERM------GEKS 509 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + +SI K + + ++ LGI H+G A+ LA + S + A N+ + Sbjct: 510 AHKVIESIEKSKTQPWNKQLYGLGILHIGEGNAKLLANAFASEDELSH-----AAINSPE 564 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQ---NPRNICAVEAL---LKEVSPSIGRHEKNVSS--- 645 + ++ +G+ + +++ E+++ N R I ++ L LK + G + ++S Sbjct: 565 --RIAKIHGIGNEMVESLQEWFEDESNQRIISRLKELGVQLKSTANDSGAIKSVINSSNK 622 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 E+ K+ V TGT++ I R AQE + + G V++ +S KT +I G NPGSKL KA++LG Sbjct: 623 EVLGKRFVLTGTMESINRDVAQEMIEKAGGKVNSSISSKTTYLITGSNPGSKLSKAKELG 682 Query: 706 VKIMNEEQFLFLLQQ 720 +KI+NEE F LL + Sbjct: 683 IKIINEEDFFNLLSK 697 >gi|329667842|gb|AEB93790.1| NAD-dependent DNA ligase [Lactobacillus johnsonii DPC 6026] Length = 668 Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 224/722 (31%), Positives = 378/722 (52%), Gaps = 70/722 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ +A +++ L +++ D YY P++ D+ YD + + FPDL + Sbjct: 4 LTHNEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTA--- 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N ++GGE+ L KV H +P LS+ +++ E+L++F RI + + + + +E Sbjct: 61 NSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKEELKEFDERITKLV----GHPVAYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y GK A+ RG+G GEDV+A + I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYTNGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G + +ANPRNAA+G LR+L+ IT R L+ F++ Sbjct: 175 YMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPRN 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + +M LGF N R+ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G +++ Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DY++ + +R+GD V + +AG++IP++ +++++R D++P+ Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 402 IPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGPR 454 Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 KQ +D F I AD++ L Q + + F + S+TNL SI Sbjct: 455 IVKQLIDKGF--------INDVADLYHLTPDQ------LGQLDHFKEKSITNLLSSIENS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + S E ++ LGI HVGA+ AR + + Y + + +Q L + +G Sbjct: 501 KQNSAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658 + IA+++ ++ P + + LL+E+ S +G E+ + K +V TG L Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + + Sbjct: 607 SAFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKI 666 Query: 719 QQ 720 ++ Sbjct: 667 EK 668 >gi|311086964|gb|ADP67044.1| DNA ligase (NAD+) [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 678 Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 237/721 (32%), Positives = 387/721 (53%), Gaps = 67/721 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE+ RK L L+ E YH ++ II D+EYD L R+ + +L S+ P Sbjct: 8 IEKLRKIL--LKYEYFYH-----TLNQSIISDAEYDYLFRQLYELELKNKELIPSDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 K+G + K+ H P LSLE +++ F RI + ++ + F E K Sbjct: 60 --QKVGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSIH--NNEPLSFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG I+I YE+G FV AA RGDG GE++++ R I +IP ++ ++IP+ +E+RGEV+ Sbjct: 116 LDGVAISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K++F+ LN + K ++NPRNAA+G LR ++P +IT R L F HG + F Sbjct: 176 MLKSNFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDP-NITAERKLIFSCHG----CDFF 230 Query: 251 AKGQYEMLQK----MRCL--GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 K E+ M+CL G PVN + ++ I+ +Y ++ R+ L +DIDG+V Sbjct: 231 VKTNKELTTHYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVI 290 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ LQK++G +SPRW I+ KF+ K+ T L D+ Q+GRTG++TPVA PV I Sbjct: 291 KVNSLELQKKIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYIS 350 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +I+ A+LHN++ I+ L ++ D + + R+G+VIP+++++I R + Sbjct: 351 GVMISKASLHNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDN 399 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+ FPSFCP+C + ++ ++ K RC GL C AQ+ + L HF S+ + + Sbjct: 400 AKKIIFPSFCPVCNTELLENIEEK------LIRCHSGLTCDAQKKQALYHFFSKKSLYVV 453 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG + ++ + ++ P D F L + +++N+ G + +SI K Sbjct: 454 GLGPKIINELVEKG----LVKNPIDFFYL---KDIDLIQLKNV---GKRKSIKIINSIKK 503 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L+ FI++LGI VG +A +A Y++ N + L L + V Sbjct: 504 CKKTTLKCFIYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGV 553 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSE---IENKKLVFTGTLQK 660 G II+ I ++ N V L+K+ + E ++SE NKK+V TG + Sbjct: 554 GKIISNNIFNYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKS 613 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + + + LGA +S +SRKTD +I G+N GSK +A+ L VKI+N+E+ L+++ Sbjct: 614 FSRIELKTILLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEELNSLIRK 673 Query: 721 Y 721 + Sbjct: 674 F 674 >gi|317125504|ref|YP_004099616.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043] gi|315589592|gb|ADU48889.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043] Length = 715 Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 235/744 (31%), Positives = 375/744 (50%), Gaps = 76/744 (10%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 IE ++ E + L + S Y+ P I D+EYD L RR +A+ +P L Sbjct: 10 IEDAIPDEVHHEWADLAERASAAQFAYHVKDAPTISDAEYDGLIRRLNALEAQWPSL--- 66 Query: 69 EDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P K+G + F+ V H LSL+ ++ E+LR + R+ +++ Sbjct: 67 RTPDSPTQKVGASAFATGFETVDHLERMLSLDNAFSFEELRAWAERV----EREVGAGAH 122 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 F E KIDG + + YE+G+ V A RGDG +GEDV+ +R I +P LS + +PE++E Sbjct: 123 FLTELKIDGLAVNLLYEQGRLVRALTRGDGRTGEDVTNNVRTIEGVPERLSGDDVPELVE 182 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 +RGEV+ F LN ++A G+ P+ANPRNAA+G LR+ +P R L VHG+G Sbjct: 183 IRGEVFFPTAGFADLNAALVAAGKAPFANPRNAAAGSLRQKDPKVTAGRPLRLLVHGIGA 242 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 Q E +R G P ++ V+ + + + R ++IDG+V K Sbjct: 243 RRGFDIARQSEGYAALRSWGLPTSDQVKVLDDIADVEEFVTFHGEHRHDGLHEIDGIVVK 302 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VDE +LQ+QLG +R+PRW I+ K+ ++ +TRLLDI + +GRTG +TP ++PV + G Sbjct: 303 VDEVTLQRQLGATSRAPRWAIAFKYPPEEVNTRLLDIRVNVGRTGRVTPYGVMQPVVVAG 362 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + + ATLHN+ +V R G + +GD V++++AG+VIP++V +V+ R Sbjct: 363 STVEQATLHNQH---------EVERKG--VLIGDTVVLRKAGDVIPEIVGPVVDLRDGSE 411 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +PF P+ CP C +++ + K G RC +C +Q ER+ SR A +IE Sbjct: 412 RPFVMPTQCPSCGTQLAPE---KEGD--KDIRCPNSRSCPSQLRERVFALASRSALDIEA 466 Query: 486 LGKQ-------------QLDFFFKSEDP----AFSI---RIPADIFTLQRRQQTSTTKIE 525 LG + + D F ED A+ + R+ A L R T Sbjct: 467 LGWEGSIALLESGILTDEGDLFAPPEDSPEAGAYGVTRERLAA--VGLYTRAAKRTDDPA 524 Query: 526 NILGFGDVSVTN---LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 +++ G V N L + K + L R + +L IRHVG AR+LA + S + Sbjct: 525 HVVD-GRVLSANGEKLLAELEKAKTQPLWRVLVALSIRHVGPTAARALATTFGSMDAIRR 583 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY------QNPRNICAVEALLK-EVSPS 635 +A VG IIA+++ ++ + R A ++ EV S Sbjct: 584 ASIEELAEAEG----------VGQIIAESVTAWFAVDWHAEIVRKWAAARVRMEDEVDAS 633 Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 + R +E + +V TG+L+ R + +E + G + +SRKTD ++VG N G Sbjct: 634 VAR-------TLEGRTVVVTGSLEGFSRDETKEAILSRGGKAAGSVSRKTDWVVVGANAG 686 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719 SK KA++LG+++++E QF+ LL+ Sbjct: 687 SKAAKAEELGLRVLDEAQFVRLLE 710 >gi|108798849|ref|YP_639046.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. MCS] gi|119867964|ref|YP_937916.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. KMS] gi|126434449|ref|YP_001070140.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. JLS] gi|123369452|sp|Q1BAU4|DNLJ_MYCSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216212|sp|A3PXM2|DNLJ_MYCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216213|sp|A1UE68|DNLJ_MYCSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|108769268|gb|ABG07990.1| DNA ligase, NAD-dependent [Mycobacterium sp. MCS] gi|119694053|gb|ABL91126.1| DNA ligase, NAD-dependent [Mycobacterium sp. KMS] gi|126234249|gb|ABN97649.1| DNA ligase, NAD-dependent [Mycobacterium sp. JLS] Length = 701 Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 231/716 (32%), Positives = 368/716 (51%), Gaps = 59/716 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R +L E+ H YY P+I D+++D L ++ +A+ P+L P+ P Sbjct: 23 RHRWQALADEVRDHQFRYYVRDAPVISDADFDKLFQQLEALEAEHPEL---RAPDSPTQL 79 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +GG + F H LSL+ ++N+++L + +R+ + DD + + E K+DG Sbjct: 80 VGGAGFATDFTPAEHLERMLSLDDVFNVDELTAWSSRVRA--EVGDDAA--YLCELKVDG 135 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVY 192 + + Y G+ AA RGDG GEDV+ R + +P L+ P ++EVRGEV+ Sbjct: 136 LALALVYRDGRLERAATRGDGRVGEDVTLNARTLDDVPERLTPSDEFPHPAVLEVRGEVF 195 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251 DF ALN ++A G+ P+ANPRN+A+G LR+ NP R L HG+G T Sbjct: 196 FRVADFEALNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRPLRMVCHGIGYTEGFSP 255 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDE 308 +E +R G PV++ + + ++Y+ E R + ++IDG+V K+D+ Sbjct: 256 TSLHEAYGALRAWGLPVSDHTTRVQGMDAVRERIAYWGEH---RHDIEHEIDGVVVKLDQ 312 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ++LG +R+PRW +++K+ ++A T+LLDI + +GRTG +TP A +EPV + G+ + Sbjct: 313 IALQRRLGATSRAPRWAVAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAYMEPVKVAGSTV 372 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN +K R G + +GD V++++AG+VIP+V+ +V+ R + F Sbjct: 373 GLATLHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGTEREF 421 Query: 429 SFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P+ CP C + +L P K G A RC C AQ ER+ H R AF+IEGLG Sbjct: 422 VMPTHCPECGT----ELAPAKEGD--ADIRCPNSRTCPAQLRERVFHVAGRGAFDIEGLG 475 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQR----RQQTSTTKIENILGFGDVSVTNLYDSIN 543 + + A I D+FTL R + TTK + G + NL Sbjct: 476 YEAAIALLQ----AGVITDEGDLFTLTEDDLLRTELFTTKGGAVSANGRRLLANL----G 527 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + L R + +L IRHVG AR+LA + S ++ II + D L V Sbjct: 528 KAKAQPLWRVLVALSIRHVGPTAARALATEFGS-------LDAIIEASED---QLAAVEG 577 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 VG IA A+ E++ + VE + +++ +E +V TG+L R Sbjct: 578 VGPTIAAAVKEWFTVDWHCAIVEKWRAAGVRMADERDASIARTLEGLSIVVTGSLAGFSR 637 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+E + G + +S+KT ++ GD+PGSK +KA LGV +++E+ F LL+ Sbjct: 638 DEAKEAIIARGGKAAGSVSKKTAYVVAGDSPGSKYDKAIDLGVPVLDEDGFRNLLE 693 >gi|297566494|ref|YP_003685466.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946] gi|296850943|gb|ADH63958.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946] Length = 670 Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 229/712 (32%), Positives = 373/712 (52%), Gaps = 55/712 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +A++ + L +EI YH+ YY P+I D+EYD L R + +P+L P+ Sbjct: 8 LTEAQRRIHQLREEIRYHNYRYYVLDDPVISDAEYDRLLRELKELEARYPELV---TPDS 64 Query: 74 PLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G G++ S + H P SL+ + ED+R F RI R + LE Sbjct: 65 PTQTVGPGKIETSFAAIPHPTPLYSLDNAFGPEDIRLFEERIARSLGMP--APFPYVLEY 122 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG + + YE+G ++ A RG+G GEDV+ + A+ IP + + P +EVRGEVY Sbjct: 123 KIDGLSVNLYYEEGTLLWGATRGNGQVGEDVTPNLMAVEGIPHRV-VGAPPRLEVRGEVY 181 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG-KTSEIF 250 + FL +N E+ G P+ NPRNAA+G LR+ +P R L ++ +G +E Sbjct: 182 LPIETFLKVNAELEEQGLPPFKNPRNAAAGSLRQKDPRVTAKRGLKAVLYSIGLGLAESE 241 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q E+L+ ++ LGF + ++A + + Y M + R LPY+ DG+V K+D+ Sbjct: 242 VRSQSELLEYLKHLGFAIEPHYQKAVGWRAVEETYQRMLAKRRQLPYEADGVVVKLDDIR 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ LG ++SPRW I++KF ++ TR++ ++ +GRTG +TPVA LEPV+I G+ ++ Sbjct: 302 LQADLGFTSKSPRWAIAYKFPAEEKITRVVGVEFTVGRTGRITPVANLEPVDIEGSTVSR 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 LHN+ Y++ L D+ GD+VL+ +AG VIP+V+ +I R A ++ Sbjct: 362 VVLHNQSYLEEL-----------DLHYGDQVLIHKAGGVIPEVLRVIPEARPKGAVKVTY 410 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + +V + GK+ H C L C A+ E + H+ SR A +I+GLG++ Sbjct: 411 PTRCPECGTPLVLE-----GKI---HLCPNPL-CPAKAYEAILHYASRGAMDIQGLGEKL 461 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + +R P+D++ L + Q ++ G+ S NL D I + L Sbjct: 462 VAKLLAE----GLVRDPSDLYKLTKEQLMGLERM------GEKSAQNLIDQIEASKGRGL 511 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F+LGI VGA +AR+LA+ + ++ ++A + D V D+ Sbjct: 512 ERLLFALGIPQVGAALARTLARRF-------GHLDRLLAASVQDLDE------VEDVALP 558 Query: 611 AIVEFYQ--NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 YQ + +++ A L+ S EK ++ V TG L + R + Sbjct: 559 TAERIYQTLHQKDMRAYIERLRAAGVSFEAKEKPQGDRLKGLTFVLTGELSR-PREEILR 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA VS+ +S+KT ++ G+ GSKL+KA++LGV +++E LL + Sbjct: 618 RLEALGAKVSSSVSKKTSYVVAGEGAGSKLQKARELGVPVLDEAGLEALLSR 669 >gi|255521025|ref|ZP_05388262.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-175] Length = 550 Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 212/580 (36%), Positives = 318/580 (54%), Gaps = 54/580 (9%) Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205 GK+ A RGDG GED++A +R I +IP L + IEVRGE ++ K F LN+ Sbjct: 4 GKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSFQKLNEIR 61 Query: 206 IAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 G+ +ANPRNAA+G LR+L+ +R L+ F++ + E+ + L + L Sbjct: 62 EEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLETL 121 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 G VN R N+ + +Y E R+ L YDIDG+V K++ Q+Q+G +SPRW Sbjct: 122 GLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGNTVKSPRW 181 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 I++KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNED I Sbjct: 182 SIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNEDLIT---- 237 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 +DIR+GD VL+K+AG++IP+V+ I +R +PF P CP C S +VR Sbjct: 238 -------EKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSEEPFHMPKNCPACDSELVR- 289 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 L + A RC C AQ E L HFVSR+A NI+GLG++ + F I Sbjct: 290 LEEEV-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQ----HLI 339 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 + AD+F L S K+ + G+ SVTNL SI + SLE+ +F LGIRHVGA Sbjct: 340 KDVADLFFL------SKEKLLELERMGEKSVTNLLASIQASKQNSLEKLLFGLGIRHVGA 393 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 + A+SLA ++ + N + ND +G+ +A +IV ++ N Sbjct: 394 KAAKSLAIHFDTMDNLKVADKETLTSIND----------IGEKMADSIVTYFANEE---- 439 Query: 625 VEALLKEVSPS------IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 V LL+E+ + G +++S E K +V TG L+K+ R+ A+ + LG Sbjct: 440 VHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIESLGG 499 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 VS +S+KTD+++ G + GSKL KA++L + I +EE + Sbjct: 500 NVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLI 539 >gi|313207091|ref|YP_004046268.1| DNA ligase, naD-dependent [Riemerella anatipestifer DSM 15868] gi|312446407|gb|ADQ82762.1| DNA ligase, NAD-dependent [Riemerella anatipestifer DSM 15868] gi|315022511|gb|EFT35538.1| DNA ligase [Riemerella anatipestifer RA-YM] Length = 669 Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 220/712 (30%), Positives = 361/712 (50%), Gaps = 50/712 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S++ + ++ L +E+ H+ YY P I D E+D + + A+P+ A D Sbjct: 1 MSLDDIKHKIEELREELHQHNYNYYVLDTPSISDYEFDMMLEELKELELAYPEFA---DN 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG + + V H SL+ +N EDL + R+ + D I + E Sbjct: 58 NSPTQRVGGNITKNFPTVEHRHRMYSLDNSYNFEDLSDWQNRLIKSL---DTTDIEYVAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG I+I YE G F A RGDG G++++A ++ I IP + P +RGE+ Sbjct: 115 LKYDGASISILYENGAFKQAITRGDGFQGDEITANVKTISDIPLKIKGEYPNTFYIRGEI 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 Y++K F +N G + NPRN ASG L+ + T++ R L+ ++ + + Sbjct: 175 YLTKKHFNLINKAREKEGLDLFMNPRNTASGSLKMQDSTEVRKRKLSAVLYQV-VAEDTP 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K +E+L++ + GF + + + + + R L ++IDG+V KV+ + Sbjct: 234 VKTHWELLEQTKDWGFKTSQQAKLCKNLDEVKDFIDYWDKERQHLDFEIDGIVIKVNNLN 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG A+SPRW ++HKF ++ T+L I Q+GRTG +TPVA L+PV + G ++ Sbjct: 294 QQQLLGYTAKSPRWAMAHKFKAEKVETQLESISYQVGRTGTITPVANLKPVLLAGTIVKR 353 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHNED I+ L ++ D V V++ GE+IPK+V + +R P+A ++ Sbjct: 354 ASLHNEDIIRKL-----------NLHTQDFVYVEKGGEIIPKIVGVNKEKRLPNATLVAY 402 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 S CP C +VR+ AAH C C Q + ++ H+VSR A NIE LG + Sbjct: 403 ISHCPECHMPLVRNEGE------AAHFCPNETHCPPQVIGKMIHYVSRKALNIENLGSET 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F+ I AD +TL + Q ++ + S N+ D I K + I Sbjct: 457 IEQLFREG----LISNIADFYTLTKEQLLPLDRM------AEKSAQNILDGIEKSKQIPF 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGI+HVG +A+ L K + + + L V VG IA+ Sbjct: 507 EKVLFGLGIKHVGETVAKKLVKNFHTIDGLKKAT----------LEELTEVEDVGIKIAE 556 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRHKAQ 667 ++V ++QN NI ++ LK + + E VS+ +E K +FTG L R +A+ Sbjct: 557 SLVNYFQNEENIEILDR-LKSYGIQLEQEENTSAKVSNALEGKTFLFTGKLSLFTREQAE 615 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLL 718 E V + G + +S+ + ++VG+ GSKL+KAQ L V I++E++FL L+ Sbjct: 616 EMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQTLSTVTILDEQEFLDLI 667 >gi|268319976|ref|YP_003293632.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785] gi|262398351|emb|CAX67365.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785] Length = 668 Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 223/722 (30%), Positives = 379/722 (52%), Gaps = 70/722 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ +A +++ L +++ D YY P++ D+ YD + + FPDL ++ Sbjct: 4 LTHSEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTADSI 63 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++GGE+ L KV H +P LS+ +++ ++L++F RI + + + + +E Sbjct: 64 T---QRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLV----GHPVAYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y KGK A+ RG+G GEDV+A + I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYTKGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G + +ANPRNAA+G LR+L+ IT R L+ F++ Sbjct: 175 YMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPRN 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + +M LGF N R+ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G +++ Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DY++ + +R+GD V + +AG++IP++ +++++R D++P+ Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 402 IPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGPR 454 Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 KQ +D F I AD++ L Q + + F + S+TNL SI Sbjct: 455 IVKQLIDKGF--------INDVADLYHLTPDQ------LGQLDHFKEKSITNLLSSIENS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + S E ++ LGI HVGA+ AR + + Y + + +Q L + +G Sbjct: 501 KQNSAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658 + IA+++ ++ P + + LL+E+ S +G E+ + K +V TG L Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + + Sbjct: 607 SAFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKI 666 Query: 719 QQ 720 ++ Sbjct: 667 EK 668 >gi|219681449|ref|YP_002467834.1| DNA ligase (NAD+) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471124|ref|ZP_05635123.1| DNA ligase (NAD+) [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254781271|sp|B8D8M5|DNLJ_BUCA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219624292|gb|ACL30447.1| DNA ligase (NAD+) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 675 Score = 350 bits (897), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 240/729 (32%), Positives = 390/729 (53%), Gaps = 74/729 (10%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE+ RK L L+ E YH ++ II D+EYD L R+ + +L S+ P Sbjct: 8 IEKLRKIL--LKYEYFYH-----TLNQSIISDAEYDYLFRQLYELELKHKELIPSDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 K+G + K+ H P LSLE +++ F RI + ++ + F E K Sbjct: 60 --QKVGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSIH--NNEPLSFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG I+I YE+G FV AA RGDG GE++++ R I +IP ++ ++IP+ +E+RGEV+ Sbjct: 116 LDGVAISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K++F+ LN + K ++NPRNAA+G LR ++P +IT R L F HG + F Sbjct: 176 MLKSNFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDP-NITAERKLIFSCHG----CDFF 230 Query: 251 AKGQYEMLQK----MRCL--GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 K E+ M+CL G PVN + ++ I+ +Y ++ R+ L +DIDG+V Sbjct: 231 VKTNKELTTHYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVI 290 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ LQK++G +SPRW I+ KF+ K+ T L D+ Q+GRTG++TPVA PV I Sbjct: 291 KVNSLELQKKIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYIS 350 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +I+ A+LHN++ I+ L ++ D + + R+G+VIP+++++I R + Sbjct: 351 GVMISKASLHNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDN 399 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+ FPSFCP+C + ++ ++ KL+ RC GL C AQ+ + L HF S+ + + Sbjct: 400 AKKIIFPSFCPVCNTELLENIEE---KLI---RCHSGLTCDAQKKQALYHFFSKKSLYVV 453 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG + ++ + ++ P D F L + +++N+ G + +SI K Sbjct: 454 GLGPKIINELVEKG----LVKNPIDFFYL---KDIDLIQLKNV---GKRKSIKIINSIKK 503 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L+ FI++LGI VG +A +A Y++ N + L L + V Sbjct: 504 CKKTTLKCFIYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGV 553 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSE---IENKKLVFTGTLQK 660 G II+ I ++ N V L+K+ + E ++SE NKK+V TG + Sbjct: 554 GKIISNNIFNYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKS 613 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + + + LGA +S +SRKTD +I G+N GSK +A+ L VKI+N+E+ Sbjct: 614 FSRIELKTILLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEEL------ 667 Query: 721 YNTTLRIHD 729 N+ +RI + Sbjct: 668 -NSLIRIKE 675 >gi|228476991|ref|ZP_04061629.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126] gi|228251010|gb|EEK10181.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126] Length = 652 Score = 350 bits (897), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 225/705 (31%), Positives = 372/705 (52%), Gaps = 61/705 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L +++ + YY P + D+EYD L R A+ +P+ +++ P +++ Sbjct: 3 KRMKELVVKLNQYAKEYYTEDNPSVSDAEYDKLYRELVALEAEYPEYVQADSPT---HRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ + D + E KIDG Sbjct: 60 GGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDQRVKAEFPNAD-----YMAELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ Y G A RGDG GE+++ ++ I IP L L+ P I VRGE Y+ + +F Sbjct: 115 ISLTYVDGVLQVGATRGDGSIGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 +N + G +ANPRNAA+G LR+L+ + R L F++ +E Q ++ Sbjct: 173 ERINIQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFLYQEASPTERLT--QNDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN ++ I + + R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDDLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ LL +D Q+GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R +P P+ CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQ-EPMEVPTQCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC +C AQ E L HF SRDA NI G+G ++ FK+ Sbjct: 399 GSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFKA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E ++ ADI+ L ++ + GF + S LY +I + S E+ ++ L Sbjct: 452 E----LVKDVADIYGL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLYGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA++++ L + + S + A + D ++ V +G++IA++I ++ Sbjct: 502 GIRHVGAKVSKQLLEAFGSIKELA----------SADVEAIAAVDGLGEVIAKSIQRYFA 551 Query: 618 NPRNICAVEALLKEVSP---SIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQ 672 + LLKE+ ++ + V+ + + K +V TG L+ ++R +A+ + Sbjct: 552 KEE----AQVLLKELETYGVNLAYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEA 607 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LGA V+ +S+KTD+++ G N GSKLEKAQ LG+++ +E L L Sbjct: 608 LGAKVTGSVSKKTDLVVAGSNAGSKLEKAQSLGIEVKDEAWLLDL 652 >gi|42519595|ref|NP_965525.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533] gi|81667534|sp|Q74I49|DNLJ_LACJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|41583884|gb|AAS09491.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533] Length = 668 Score = 350 bits (897), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 223/722 (30%), Positives = 379/722 (52%), Gaps = 70/722 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ +A +++ L +++ D YY P++ D+ YD + + FPDL ++ Sbjct: 4 LTHNEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTADSI 63 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++GGE+ L KV H +P LS+ +++ ++L++F RI + +S+ + +E Sbjct: 64 T---QRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLV----GHSVAYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y GK A+ RG+G GEDV+A + I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYTDGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G + +ANPRNAA+G LR+L+ IT R L+ F++ Sbjct: 175 YMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPRN 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + +M LGF N R+ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G +++ Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DY++ + +R+GD V + +AG++IP++ +++++R D++P+ Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 402 IPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGPR 454 Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 KQ +D F I AD++ L Q + + F + S+TNL SI Sbjct: 455 IVKQLIDKGF--------INDVADLYQLTPDQ------LGQLDHFKEKSITNLLSSIENS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + S E ++ LGI HVGA+ AR + + Y + + +Q L + +G Sbjct: 501 KQNSAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658 + IA+++ ++ P + + LL+E+ S +G E+ + K +V TG L Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + + Sbjct: 607 SAFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKI 666 Query: 719 QQ 720 ++ Sbjct: 667 EK 668 >gi|300858287|ref|YP_003783270.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41] gi|300685741|gb|ADK28663.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41] gi|302206007|gb|ADL10349.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis C231] gi|302330560|gb|ADL20754.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis 1002] gi|308276242|gb|ADO26141.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis I19] Length = 694 Score = 349 bits (896), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 233/715 (32%), Positives = 362/715 (50%), Gaps = 62/715 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ L +++ YH D YY P I D ++DAL R + P+LA P+ P + Sbjct: 25 RRQWDELAEQVRYHRDAYYN-DTPEISDQDFDALFRTLQKLEEEHPELAV---PDSPTLE 80 Query: 78 IGGEMNLS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +G + LS V H +SL+ +++ +L + W ++ + T E KID Sbjct: 81 VGAPVALSSSFNNVEHLERLMSLDNVFDAAELSE--------WLQRTPAQAYLT-ELKID 131 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEV 191 G + + Y GK AA RGDG GEDV+ + I +P L N IPE++EVRGEV Sbjct: 132 GLSLDLIYRDGKLWRAATRGDGRIGEDVTENAKVIADVPHRLKENAEFPIPELLEVRGEV 191 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 +I+ DF A+N++ G KP+ANPRNAA+G LR+ + + R L HGLG T Sbjct: 192 FIAVEDFAAVNEQRQLEGGKPFANPRNAAAGSLRQKDVEAVKKRRLRMICHGLGATQGFT 251 Query: 251 AKGQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 QY + + G PV+ V+ A V Y+ E R +++DG+V KVD Sbjct: 252 PASQYHAYEALAAWGLPVSPYTELVQSAAEVQEKVLYWAEH---RHDAAHEMDGVVVKVD 308 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 S Q+ LG AR+PRW I++K+ ++ +T LLDI + +GRTG +TP A + PV + G+ Sbjct: 309 SISEQRALGATARAPRWAIAYKYPPEEVTTELLDIQVGVGRTGRVTPFAVMRPVFVAGST 368 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHN+ +K R G + +GD V++++AGEVIP+V+ +V +R + Sbjct: 369 VSMATLHNQTEVK---------RKG--VLIGDTVVIRKAGEVIPEVLGPVVEKRDGTERE 417 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP+ CP C +R L P+ + A RC +C AQ RL + R AF+IE LG Sbjct: 418 FIFPTLCPSCGTR----LAPQK-EDDADWRCPNSQSCPAQLSTRLTYLAGRGAFDIEALG 472 Query: 488 KQQLDFFFKSE---DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 ++ + ++ D A + + L+ R T+ K N G + L ++ + Sbjct: 473 EKAAEDLIRTGVLIDEAGLFELTEEDL-LKTRVYTTKKKTLNATG------SKLLANLEQ 525 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + L R + +L IRHVG AR+LA Y S + IA V Sbjct: 526 SKKADLWRVLVALSIRHVGPTAARALASRYHSMDALREASAEEIADTEG----------V 575 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G IIAQ+ ++++ + VE + + + +V TG+L+ R Sbjct: 576 GAIIAQSFKDWFEVDWHAHIVEQWARAGVTMAEETSQLPEQTLAGMTVVVTGSLEGFSRD 635 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + G S +S+KTD ++VG+N GSK KA++LG+ I++E F+ LL+ Sbjct: 636 SAKEAIISRGGKASTSVSKKTDYVVVGENAGSKETKARELGLTILDESGFIRLLE 690 >gi|269119219|ref|YP_003307396.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386] gi|268613097|gb|ACZ07465.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386] Length = 669 Score = 349 bits (896), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 225/708 (31%), Positives = 375/708 (52%), Gaps = 49/708 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E I++ +EL L I +++ YY+ ++ ++ D EYD L + ++I +P+L Sbjct: 1 MEQTGIKKRYEELKDL---IRKYNEHYYEKNESLVTDYEYDMLLKEMESIEKEYPEL--- 54 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 +D K+GG + KV H +P LSL +NI ++ F RI + +D I + Sbjct: 55 KDTVSVTEKVGGRASGKFSKVVHKVPMLSLSNTYNIGEIEDFDKRIKKVIG--EDQKIEY 112 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 LE K+DG I+I+YE G+ V RGDG GEDV+ I I +IP++L P +EVR Sbjct: 113 VLELKLDGLSISIQYENGRLVRGITRGDGEIGEDVTENIMQIDSIPQILKE--PVTLEVR 170 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247 GE+ + ++F +N G +ANPRNAASG +R+L + + R L+ +++ L Sbjct: 171 GEIVLPISNFNKVNKMREEAGEDVFANPRNAASGTIRQLESSIVKDRGLDCYLYFLVNAQ 230 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + + ++ + LGF F + + R L ++ DGLV K+D Sbjct: 231 NYNLQKHSDSIKYLEKLGFKTTKVFEIYKDFSLLEKAIEKWHVERERLDFETDGLVIKLD 290 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 EF+ LG +SPRW I++KF ++A T+LLDI Q+GRTG++TPVA LEPV + G++ Sbjct: 291 EFAYYSALGSTTKSPRWAIAYKFPAEKAKTKLLDITFQVGRTGVITPVAELEPVELSGSV 350 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + A+LHN D IK +DI++GD V +++A E+IP+V++ +++ER + Sbjct: 351 VRRASLHNFDEIK-----------RKDIKIGDFVYIEKAAEIIPQVIEPVISERTGSEKE 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP C ++++ + A +C AC ++++FVSRDA NI GLG Sbjct: 400 IEMPESCPSCGHKLIKIEDQ------VAIKCINP-ACPEIIKRKIEYFVSRDAMNITGLG 452 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++ F + I+ DI++L ++ ++E + G SV NL +SI + + Sbjct: 453 EKIIEKFIE----LGKIKDIVDIYSLHEYRE----ELEKLEKMGKKSVDNLLNSIEESKK 504 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + ++SLGI VG A LAK +L+ I+N+ + +D L+ V +GD Sbjct: 505 REYSKVLYSLGIPFVGKFTANLLAKEFLN-------IDNLKSKETED---LLEVKGIGDK 554 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKA 666 +A+++ F + N + + LKE E + I+ K + TG L+K R + Sbjct: 555 VAKSVNMFLNDENNWNLI-SKLKETGLQFEEEEVFIEDNPIKGKTFLATGKLEKYTRDEI 613 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 ++ + G + +S+ + +I G+ GSKL+KA LGV ++NEEQF Sbjct: 614 KDIIEAKGGKYLSGVSKNLNYLIAGEKAGSKLKKANDLGVIVLNEEQF 661 >gi|166216285|sp|Q03JF6|DNLJ_STRTD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 652 Score = 349 bits (896), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 228/708 (32%), Positives = 372/708 (52%), Gaps = 67/708 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L +++ + YY P + D+EYD L R + P+L +++ P +++ Sbjct: 3 KRMKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPT---HRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F RI + D + E KIDG Sbjct: 60 GGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRIKSEFPNAD-----YMAELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ Y G A RGDG GE+++ ++ I IP L L+ P I VRGE Y+ + +F Sbjct: 115 ISLTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYE 256 +N + G +ANPRNAA+G LR+L+ + R FF G T + Q + Sbjct: 173 ERINTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERLT---QND 229 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L ++ LGF VN ++ I + + R L YDIDG+V KV+ ++Q++LG Sbjct: 230 VLNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEELG 289 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++PRW I++KF ++ +LL +D Q+GRTG++TP A L PV + G ++ ATLHN Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435 DYI +DIR+GD V+V +AG++IP V+ ++ ++R +A P PS CP Sbjct: 350 DYIT-----------EKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQEAMP--VPSQCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S ++ + A RC +C AQ E L HF SRDA NI G+G ++ F Sbjct: 397 SCGSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 K+E ++ ADI+ L ++ + GF + S LY +I + S E+ ++ Sbjct: 450 KAE----LVKEVADIYGL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLY 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIRHVGA++++ L + + + + A + D ++ V +G++IA++I + Sbjct: 500 GLGIRHVGAKVSKQLLESFGTIKELA----------SADVQAIAAVDGLGEVIAKSIQRY 549 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHKAQEY 669 + + LLKE+ S G + + ++ + K +V TG L+ ++R +A+ Sbjct: 550 FAKEE----AQVLLKELE-SYGVNLSYLGQKVTDDAILSGKTVVLTGKLEHLKRSEAKAK 604 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + LGA V+ +S+KTD+++ G + GSKLEKAQ LG+++ +E L L Sbjct: 605 LEALGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652 >gi|87301433|ref|ZP_01084273.1| DNA ligase [Synechococcus sp. WH 5701] gi|87283650|gb|EAQ75604.1| DNA ligase [Synechococcus sp. WH 5701] Length = 698 Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 225/723 (31%), Positives = 358/723 (49%), Gaps = 75/723 (10%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P + D+ YD L R + + P+L P+ P ++GG V H I Sbjct: 18 AYYVLDSPEMEDAVYDRLYRELEQLERLHPELI---SPDSPTRRVGGSPAEGFQAVRHRI 74 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEPKIDGTMITIRYEKGKF 148 LSLE ++IE+L + R+ + + ++ E KIDG + + YE G Sbjct: 75 GLLSLENAFSIEELEAWYGRLLKVLDRSAPPGEALPALPMVGELKIDGNALALSYEHGLL 134 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG SGE+++A +R I ++P R+L + PE +EVRGE I F +N E Sbjct: 135 VRAATRGDGESGEEITANVRTIQSVPLRLLLEDPPEWVEVRGEALIPDGTFAEINAERAG 194 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL----------GKTSEIFAKGQYE 256 G +ANPRNA +G LR+L+P + R L+FF + L G + Q+E Sbjct: 195 RGEPLFANPRNACAGTLRQLDPQVVAARRLDFFAYTLHLPDDWRPAPGSGDPGRPRSQWE 254 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ + GF VN + +++ + R LPY DG+V K+D+ LQ G Sbjct: 255 SLRWLAAAGFRVNPNAALCPDLAAVEAFFAAWEHKRRDLPYATDGVVVKLDDLRLQADAG 314 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++PRW I+ K+A ++A +RLL + Q+GRTG++TPVA EPV + G ++ ATLHN Sbjct: 315 FTQKAPRWAIALKYAAEEAPSRLLRLVAQVGRTGVVTPVAEFEPVPLAGTSVSRATLHNA 374 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D + L D+ GD ++V++AGE+IP+VV ++ R P A P PS CP Sbjct: 375 DRLAEL-----------DLHAGDTIVVRKAGEIIPEVVRVLAELRPPGAAPLQLPSSCPE 423 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S +VR+ G+ AA RC +C A L+H+VS+ A +++GLG + ++ Sbjct: 424 CGSALVRE----EGE--AATRCVNS-SCPAILRGALRHWVSKGAMDVDGLGAKLVEQLVD 476 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +R AD++ L S ++ G+ S NL +++ + R ++ Sbjct: 477 R----GLVRSIADLYRLDAALLASLERM------GETSAANLVEALEASKQQPWHRQLYG 526 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI HVGA A++LA+ + S + + A + ++ + +G IA+++ +++ Sbjct: 527 LGIHHVGAVNAKALARAFPSAETL-----GMAAAEQPEVITAVFG--IGGEIAESLRQWF 579 Query: 617 QNPRNICAVEALLKEVSPSIG---------------RHEKNVSSEIENKKLVFTGTLQKI 661 N ALL E+ ++G + + + V TGTL + Sbjct: 580 ATAAN----GALLAELQ-ALGIPLAAAEREQGVEGEGGGPGGAGHLSGQTFVLTGTLPSL 634 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +AQ + G VS +S+KT ++ G GSKL KA+ LGV +++EE LL++ Sbjct: 635 SRSQAQALIEAAGGKVSGSVSKKTSYVVAGAEAGSKLTKAEALGVAVLDEEGLRALLEEL 694 Query: 722 NTT 724 T Sbjct: 695 EGT 697 >gi|15604865|ref|NP_219649.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D/UW-3/CX] gi|7673995|sp|O84148|DNLJ_CHLTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|3328547|gb|AAC67737.1| DNA Ligase [Chlamydia trachomatis D/UW-3/CX] gi|289525187|emb|CBJ14662.1| NAD-dependent DNA ligase [Chlamydia trachomatis Sweden2] gi|297748276|gb|ADI50822.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-EC] gi|297749156|gb|ADI51834.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-LC] Length = 663 Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 234/704 (33%), Positives = 380/704 (53%), Gaps = 53/704 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL- 75 +R + +L E+ HD YY ++P I D YD R I P+ S P L Sbjct: 5 SRDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ G+ + V HS P LS+ ++++++L +F +R +K S ++LE KID Sbjct: 65 DRPSGQFPV----VPHSSPMLSIANVYSLQELEEFFSRT----EKLLGYSPGYSLELKID 116 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + IRYEK F A RG+G GED++A + I ++P L PE +EVRGEV++S Sbjct: 117 GIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSY 176 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 F LN G+ +ANPRNAA G L+ L+ + R L+ V+GL ++ + Sbjct: 177 EAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ GF V +Q + +V E++ +R+ LP IDG+V KVD + Q + Sbjct: 235 FENLQLCSQWGFFVAGMPKQCRSRQDVVERIREIEEMRAALPMAIDGVVIKVDNIAYQDR 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+ Sbjct: 295 LGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLY 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D I+ +DIR+GD V V++ GEVIPK+V I + +R +++P+ PS C Sbjct: 355 NQDEIE-----------KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C VV++ + RC L CS LE++ F S+ A NI+ LG++ + Sbjct: 404 PVCHEPVVKE--------KVSVRCVNPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ I +DIF L + ++ + GF D S+ NL SI + ++L+R + Sbjct: 455 FE----VGLISSCSDIFAL------AEEDLKQVPGFKDRSIQNLLASIAGAKKVALDRLL 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +L I VG+ A +LA ++ + ++ +I + D+ +S + +G +A +IV Sbjct: 505 TALSIPFVGSSGAIALADHFGT-------LDKVIEASLDELMS---IEGIGPKVAASIVA 554 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ N + ++E+ + + + + ++ K V TGTLQ++ R +A+E + LG Sbjct: 555 FFSKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRCLG 613 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS+ +S+ T +I G G KL+KAQ LG+ I NE + L +L Sbjct: 614 GKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRIL 657 >gi|157150014|ref|YP_001450670.1| NAD-dependent DNA ligase LigA [Streptococcus gordonii str. Challis substr. CH1] gi|190359295|sp|A8AY10|DNLJ_STRGC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157074808|gb|ABV09491.1| DNA ligase, NAD-dependent [Streptococcus gordonii str. Challis substr. CH1] Length = 652 Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 226/688 (32%), Positives = 362/688 (52%), Gaps = 71/688 (10%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R ++ +P+ P P +++GG++ K H P Sbjct: 19 YYTKDAPSVSDSEYDQLYRELVSLEEQYPNEIL---PESPTHRVGGKVLDGFEKYQHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ +L F R+ +K+ + E KIDG I++ YE G V A R Sbjct: 76 LYSLQDAFSRAELVAFDERV-----RKEFPDASYLCELKIDGLSISLAYENGILVAGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+++ ++ + IP L+L P I VRGE Y+ K F A+N G +A Sbjct: 131 GDGSIGENITENLKRVKDIP--LTLPEPLTITVRGECYMPKASFDAVNQLRQENGEAEFA 188 Query: 215 NPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 NPRNAA+G LR+L+ + + + F TSE Q ++L+K+ LGF VN Sbjct: 189 NPRNAAAGTLRQLDTSVVAKRNLATFLYQEASPTSE---ATQEDVLEKLSQLGFSVNEKR 245 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 A+T + + ++ R LPY+IDG+V KV+ + Q++LG ++P+W I++KF Sbjct: 246 VLASTIDQVWDFIEKVGQERDKLPYEIDGIVIKVNHLAAQEELGFTVKAPKWAIAYKFPA 305 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI+ Sbjct: 306 EEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIR-----------E 354 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 +DIR D V+V +AG++IP V+ ++ +R D + PS CP CQS ++ + Sbjct: 355 KDIRKDDTVIVYKAGDIIPAVLRVVEGKRVSD-EHLDVPSKCPSCQSDLLHFEDE----- 408 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 A RC L C AQ +E L HF SRDA NI GLG ++ F + +R A I+ Sbjct: 409 -VALRCINPL-CPAQIMEGLAHFASRDAMNISGLGPAVVEKLFAKD----LVRDVAGIYR 462 Query: 513 LQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 L IE++L F + S LY++I ++ S E+ +F LGIRHVG++ +R Sbjct: 463 LN---------IEDLLQLENFKEKSANKLYNAIQASKSNSAEKLLFGLGIRHVGSKASRI 513 Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 L + + + AQ + ++ + +G +IA+++ ++ + LL Sbjct: 514 LLEKFHDIPSLAQA----------EQEEIVSIDSLGMVIAKSLHSYFAQE----GTQILL 559 Query: 630 KEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 KE+ + +G + + + K +V TG L+ + R +A+E + +LGA V+ +S+ Sbjct: 560 KELEEAGVNLAYLG-EKAAADAVLSGKTVVLTGKLETLTRTQAKEKLLRLGANVAGSVSK 618 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 KTD++I G + GSKL KAQ+LG++I +E Sbjct: 619 KTDLVIAGADAGSKLAKAQELGIEIQDE 646 >gi|282851211|ref|ZP_06260576.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1] gi|282557179|gb|EFB62776.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1] Length = 668 Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 223/722 (30%), Positives = 378/722 (52%), Gaps = 70/722 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ QA +++ L +++ + YY P++ D+ YD + + FPDL S Sbjct: 4 LTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTS--- 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GGE+ L KV H +P LS+ +++ ++L++F RI + + + + +E Sbjct: 61 DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLV----GHPVAYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y GK A+ RG+G GEDV+A + I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYTAGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G + +ANPRNAA+G LR+L+ IT R L+ F++ + Sbjct: 175 YMEKEAFAKLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPKN 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + +M L F N ++ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAIDEMNRLDFHTNQTGQRLESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G +++ Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETVVKEIEWTVGRTGVVTPTAVMDPVQLAGTVVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DY++ + +R+GD V + +AG++IP++ +++N+R D++P+ Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLNKRPKDSEPYQ 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 402 IPNKCPSCGQDLVHLQDE------VALRCINPM-CPAQVEEGIIHFASRGAMNIMGLGPR 454 Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 KQ +D F + AD++ L Q + + F D S+TNL SI Sbjct: 455 IVKQLIDKNF--------VNDVADLYHLTNEQ------LSQLDHFKDKSITNLLTSIENS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + S E +F LGI HVGA+ AR + + Y + + +Q L + +G Sbjct: 501 KQNSAELLLFGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658 + IA+++ ++ P + + LL+E+ S +G E+ + K +V TG L Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + + Sbjct: 607 SDFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKI 666 Query: 719 QQ 720 ++ Sbjct: 667 EK 668 >gi|325962711|ref|YP_004240617.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3] gi|323468798|gb|ADX72483.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3] Length = 767 Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 225/750 (30%), Positives = 378/750 (50%), Gaps = 65/750 (8%) Query: 4 RQLIPIEALSI--EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 R P+E S+ E R+E +L + + YYQ P++ D+E+D L RR + I Sbjct: 14 RTTEPVEPESVPSESVREEYENLVDLVRKYRFAYYQEDAPLVSDAEFDELFRRLEEIEAL 73 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 P+L ++ P ++GGE++ + V H SLE ++++E+L ++T+ K Sbjct: 74 HPELVSNDSPT---QEVGGEVSAAFAAVEHLQRMYSLEDVFSLEELEAWLTKASASIGKL 130 Query: 122 DDNS--IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-S 178 + + + E KIDG + + Y GK V AA RGDG +GED++ + I IPR L Sbjct: 131 GNGTPAAAWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIQEIPRELRG 190 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237 P +EVRGEV+I +F N+ +I G+ P ANPRNAA+G LR+ +P + R L Sbjct: 191 EGFPAEMEVRGEVFIPSKEFAEFNEALIEAGKAPLANPRNAAAGSLRQKDPAETAKRPLK 250 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 FVHG+G + A Q E ++ G PV+ + ++ + R L + Sbjct: 251 MFVHGIGARDGLPAGSQSESYALLKQWGLPVSPYSEVLGSLDEVLEFIKRYGDKRHKLLH 310 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG+V KVD+F+ Q+ LG R PRW +++K+ ++ T+LLDI + +GRTG +TP Sbjct: 311 EIDGIVIKVDDFATQRALGYTTRVPRWAVAYKYPPEEVHTKLLDIQVNVGRTGRVTPFGL 370 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 +EPV + G+ + ATLHN+D +K + +++GD V++++AG+VIP++V + Sbjct: 371 MEPVKVAGSTVEMATLHNQDVVK-----------AKGVKIGDIVILRKAGDVIPEIVGPV 419 Query: 418 V---NERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLK 473 + +++ P + F P+ CP C + L P K G + RC +C +Q ER+ Sbjct: 420 LALRDQQDPPVRDFVMPTECPSCGT----PLAPAKEGDVDI--RCPNAKSCPSQLRERVF 473 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDP---------AFSIRIPADIFTLQ-RRQQTS--- 520 H R AF+IE LG + + +P A P D+ ++ RR++ S Sbjct: 474 HLAGRGAFDIEALGWEAAIALTQPAEPEVPPLTSEAALFDLTPEDLAGVRIRREKRSKGV 533 Query: 521 -TTKIENILGF-----------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 T + E + F + L+ ++K + L R + +L IRHVG +R Sbjct: 534 PTGEYELVPYFYSKGTAKSPSRPTATTEKLFKELDKAKTQPLWRVLVALSIRHVGPRASR 593 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 +LA + S Q +AH + VG IA A+ E++ + V+ Sbjct: 594 ALATAFGSMDAIRQASEEELAHVDG----------VGPTIAAALKEWFAEDWHREIVDRW 643 Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 ++++ +E +V TG+L R +A+E + G + +S+ T + Sbjct: 644 AAAGVRMKDERDESMPRTLEGLTVVVTGSLPNFSRDEAKEAILVRGGKAAGSVSKNTSYL 703 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G++ G+KL+KA+QLG+ +++E+ F LL Sbjct: 704 VAGESAGTKLDKAEQLGIPVLDEDGFRQLL 733 >gi|15616692|ref|NP_239904.1| DNA ligase (NAD+) [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132251|sp|P57172|DNLJ_BUCAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|25294009|pir||F84937 DNA ligase (NAD) (EC 6.5.1.2) [imported] - Buchnera sp. (strain APS) gi|10038755|dbj|BAB12790.1| DNA ligase (NAD+) [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 675 Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 239/729 (32%), Positives = 388/729 (53%), Gaps = 74/729 (10%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE+ RK L L+ E YH ++ II D+EYD L R+ + +L S+ P Sbjct: 8 IEKLRKIL--LKYEYFYH-----TLNQSIISDAEYDYLFRQLYELELKNKELIPSDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 K+G + K+ H P LSLE +++ F RI + ++ + F E K Sbjct: 60 --QKVGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSIH--NNEPLSFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG I+I YE+G FV AA RGDG GE++++ R I +IP ++ ++IP+ +E+RGEV+ Sbjct: 116 LDGVAISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K++F+ LN + K ++NPRNAA+G LR ++P +IT R L F HG + F Sbjct: 176 MLKSNFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDP-NITAERKLIFSCHG----CDFF 230 Query: 251 AKGQYEMLQK----MRCL--GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 K E+ M+CL G PVN + ++ I+ +Y ++ R+ L +DIDG+V Sbjct: 231 VKTNKELTTHYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVI 290 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ LQK++G +SPRW I+ KF+ K+ T L D+ Q+GRTG++TPVA PV I Sbjct: 291 KVNSLELQKKIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYIS 350 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +I+ A+LHN++ I+ L ++ D + + R+G+VIP+++++I R + Sbjct: 351 GVMISKASLHNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDN 399 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+ FPSFCP+C + ++ ++ K RC GL C AQ+ + L HF S+ + + Sbjct: 400 AKKIIFPSFCPVCNTELLENIEEK------LIRCHSGLTCDAQKKQALYHFFSKKSLYVV 453 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG + ++ + ++ P D F L + +++N+ G + +SI K Sbjct: 454 GLGPKIINELVEKG----LVKNPIDFFYL---KDIDLIQLKNV---GKRKSIKIINSIKK 503 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L+ FI++LGI VG +A +A Y++ N + L L + V Sbjct: 504 CKKTTLKCFIYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGV 553 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSE---IENKKLVFTGTLQK 660 G II+ I ++ N V L+K+ + E ++SE NKK+V TG + Sbjct: 554 GKIISNNIFNYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKS 613 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + + + LGA +S +SRKTD +I G+N GSK +A+ L VKI+N+E+ Sbjct: 614 FSRIELKTILLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEEL------ 667 Query: 721 YNTTLRIHD 729 N+ +RI + Sbjct: 668 -NSLIRIKE 675 >gi|72383117|ref|YP_292472.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A] gi|123746237|sp|Q46IA9|DNLJ_PROMT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|72002967|gb|AAZ58769.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A] Length = 690 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 239/724 (33%), Positives = 377/724 (52%), Gaps = 70/724 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL +L + +Y YY P I DS YD L R I + P L + P+ ++ Sbjct: 13 KELRALLNKANY---SYYVLDSPEIDDSVYDQLYRELIEIENIHPSLITDDSPS---QRL 66 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--SIF---FTLEPK 133 GG + V H+IP LSL+ +N+ ++ + RI + ++ N ++ E K Sbjct: 67 GGVPSKGFKNVEHNIPLLSLDNAFNLNEVEAWYGRISKLISSENKNIKKVYDPELICELK 126 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 IDG I++RYE G A RGDG +GED++ IR I TIP R+L N P +E+RGE + Sbjct: 127 IDGNAISLRYENGILTRATTRGDGKTGEDITTNIRTISTIPLRLLLENPPLWVEIRGEAF 186 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL------GK 245 + N F LN E + +ANPRN+ +G LR+L+P + +R L+FF + L Sbjct: 187 MPNNIFNKLNIERKNNDQPLFANPRNSCAGTLRQLDPKIVASRKLDFFAYSLYFPENWEP 246 Query: 246 TSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 T F K Q E L+ ++ +GF VN T + YY + + L Y DG+V Sbjct: 247 TDNNFKKPISQSESLEFLKNIGFKVNTTYETTKTLNEANKYYKYWEVKKDFLAYATDGIV 306 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+D+F +Q LG ++PRW I+ K+ ++ +T+L I Q+GR+G +TPVA E + + Sbjct: 307 VKIDKFEIQNLLGATNKAPRWAIAVKYPAEEKATKLRKIIFQVGRSGAVTPVAEFESIEL 366 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + ATLHN + L D+ D ++V++AGE+IP+V+ +I R Sbjct: 367 AGTSVNRATLHNAKRLASL-----------DLHYEDTIIVRKAGEIIPEVIRVIKEFRKV 415 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 DA+ P CP C S+++ + N K + +RC L L+H+VS+ + NI Sbjct: 416 DAKLVQLPQNCPECNSKLILESNEAITKCI-NYRCAAKLKG------LLRHWVSKGSMNI 468 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG---FGDVSVTNLYD 540 +GLG++ ++ +E SI AD++ L+ I+++L FG+ S NL Sbjct: 469 DGLGEKIINQLV-NEGYVKSI---ADLYKLE---------IDSLLELERFGEKSANNLLI 515 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 IN+ +N + + ++ LGI H+G A+SL+ + S + N IA + + +S I Sbjct: 516 EINESKNKNWHKQLYGLGIPHIGEANAKSLSNNFNSIEEL-----NAIAKESPEKISNIY 570 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVF 654 G+ + AIV+++ + N ++ L LKE S + N S+ + K V Sbjct: 571 G--FGNEMKDAIVKWFDDSNNQTLIKELKAIGFSLKESLDS--NYNSNQSNVFDGKSFVL 626 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL + R +A+E + G VS+ +S+KTD ++ G+ GSKL KAQ+LGVKI+NE + Sbjct: 627 TGTLDSLTRDEAKELIESAGGKVSSSISKKTDFLVSGEKAGSKLNKAQELGVKIINENEL 686 Query: 715 LFLL 718 LL Sbjct: 687 KLLL 690 >gi|257054924|ref|YP_003132756.1| NAD-dependent DNA ligase LigA [Saccharomonospora viridis DSM 43017] gi|256584796|gb|ACU95929.1| DNA ligase, NAD-dependent [Saccharomonospora viridis DSM 43017] Length = 731 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 232/724 (32%), Positives = 377/724 (52%), Gaps = 52/724 (7%) Query: 8 PIEALS--IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 P+E + + R+ S+L +EI H YY P I D+E+D L R + + P L Sbjct: 35 PVEGIQDVPAEVRERHSALVEEIRGHQFRYYVLDAPTISDAEFDQLMRDLERLEAEHPAL 94 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 P+ P +GG + H LSL+ ++++++L+ +I R+ +++ S Sbjct: 95 V---SPDSPTQTVGGTFSTEFRAHDHLERMLSLDNVFDLDELQAWIDRV----EREVGGS 147 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----I 181 + E K+DG + + YE G+ V RGDG +GEDV+ +R + +P L+ + Sbjct: 148 TRYLCELKVDGLAVNLVYENGRLVRGLTRGDGRTGEDVTLNVRTVQDVPERLTATDRFPV 207 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFV 240 P+++EVRGEVY +F LN ++ G+ P+ANPRNAA+G LR+ +P +R L Sbjct: 208 PDVVEVRGEVYFRVEEFADLNAALVKAGKAPFANPRNAAAGSLRQKDPKVTRSRPLRLVC 267 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 HGLGK Q E + + G PV+ + ++ ++ Y R Y+ID Sbjct: 268 HGLGKRVGFEPTRQSESYEALAAWGLPVSPYSKVIDSTEELIEYIRYWNEHRYDAAYEID 327 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KVD+ SLQ++LG +R+PRW +++K+ ++A+T LLDI + +GRTG +TP A +EP Sbjct: 328 GVVVKVDDVSLQRRLGTTSRAPRWAVAYKYPPEEANTTLLDIRVNVGRTGRVTPYAVMEP 387 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G+ ++ ATLHN + +K R G + +GDRV++++AG+VIP+V+ IV+ Sbjct: 388 VKVAGSTVSMATLHNAEEVK---------RKG--VLIGDRVVIRKAGDVIPEVLGPIVDL 436 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R + F P+ CP C +++ + K G + RC +C AQ ERL H R A Sbjct: 437 RTGTEREFVMPTHCPECGTQLAYE---KEGDVDI--RCPNARSCPAQLRERLFHLAGRGA 491 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ----RRQQTSTTKIENILGFGDVSVT 536 F+IE LG + +S I D+F L +R TK + G Sbjct: 492 FDIEVLGYEAAGALLRS----GVIADEGDVFDLTEEDLKRVDLFVTKSGQLSANG----R 543 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 L D++ ++ L + + L IRHVG A++LA+ + S I+ I A + + Sbjct: 544 RLLDNLAAAKDRPLWKVLVGLSIRHVGPTAAQALAREFGS-------IDAIDAASEE--- 593 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 L V VG IA+A+ E++ + VE + + +V +E +V TG Sbjct: 594 RLAEVDGVGPTIAKAVREWFAVDWHREVVEKWRRAGVRMEAERDTSVPRNLEGLSIVVTG 653 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL++ R +A+E + G + +S+KT ++VGD PGSK +KA QL + +++E+ F Sbjct: 654 TLREFSRDEAKEAIMARGGKAAGSVSKKTAFVVVGDAPGSKYDKAVQLKIPVLDEDGFRV 713 Query: 717 LLQQ 720 LL Q Sbjct: 714 LLDQ 717 >gi|294673321|ref|YP_003573937.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23] gi|294473291|gb|ADE82680.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23] Length = 674 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 229/725 (31%), Positives = 369/725 (50%), Gaps = 78/725 (10%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ RKEL H+ YY ++P I D E+D + + P++A DPN Sbjct: 7 IEQLRKELHE-------HNYKYYVLNQPTIGDQEFDFMMHELQDLEAKHPEMA---DPNS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G ++N +V H P LSL +N +D+ + + + +D E K Sbjct: 57 PTQRVGSDLNEEFRQVEHKYPMLSLANTYNEQDVADWYESVKKGLAGED---FEVCCEMK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL----------NIPE 183 DG I++ Y GK A RGDG G+DV+ ++ I +IP VL+ P Sbjct: 114 YDGLSISLTYVDGKLTQAVTRGDGVHGDDVTTNVKTIRSIPLVLTPPAAGDLFAAPAYPR 173 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG 242 E+RGE+ + + F LN E +ANPRNAASG L+ + + +R L+ +++ Sbjct: 174 EFEIRGEILMPWSVFERLNKEREEAEEPLFANPRNAASGTLKSQKSSLVASRQLDAYLYY 233 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 L E+ A+G YE L+ R GF ++ G+++ T I + N + R LP DG+ Sbjct: 234 L-LGEELPAEGHYENLEVARSWGFKISEGMKKVKTLQQIYDFINYWDTERKKLPVATDGI 292 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V KV+ Q+ LG A+SPRW I++KF ++ TRL ++ Q+GRTG +TPVA ++PV Sbjct: 293 VLKVNSIRQQRALGFTAKSPRWAIAYKFKAERVCTRLNEVTYQVGRTGAITPVANMDPVQ 352 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G + ATL+NED+IK D+ +GD V V++ GE+IPK+V + +++R Sbjct: 353 LAGTTVKRATLNNEDFIKSF-----------DLHIGDYVYVEKGGEIIPKIVGVDIDQRP 401 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 AQP F CP C + +VR G+ AA C C Q R++HF++R A N Sbjct: 402 IIAQPVEFIKRCPECGTPLVR----YEGE--AAWYCPNDSGCPPQIKGRIEHFIARKAMN 455 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ---QTSTTKIENILGFGDVSVTNLY 539 I+ LG + +D +++ I AD++ + +Q S TK S + Sbjct: 456 IDSLGPETVDDYYRHG----LIHNIADLYDIDVQQINGDGSRTK----------SAQRIV 501 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 + I + + ER +F+LGIR VG A+ LA+++ NI A N L Sbjct: 502 NGIAASKEVPFERVVFALGIRFVGETSAKLLARHF----------KNIDALMNAGIEELQ 551 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENKKLVF 654 + +G+++A++I+ ++ N+ +E L E+S + N+S ++ + +V Sbjct: 552 EIEGIGEVMAKSIITYFHTEENLKIIERLRNYGLQMELSEA---QTANISDKLAGQSIVI 608 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQ 713 +G R + + + Q G +S KT I+ G+N G SKL+KA++LG+KIM+EE+ Sbjct: 609 SGVFAHHSRDEYKAIIEQNGGKNVGSISSKTSFILAGENMGPSKLQKAEKLGIKIMSEEE 668 Query: 714 FLFLL 718 FL ++ Sbjct: 669 FLEMI 673 >gi|322373465|ref|ZP_08048001.1| DNA ligase, NAD-dependent [Streptococcus sp. C150] gi|321278507|gb|EFX55576.1| DNA ligase, NAD-dependent [Streptococcus sp. C150] Length = 652 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 225/706 (31%), Positives = 374/706 (52%), Gaps = 63/706 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L +++ + YY P + D+EYD L R A+ P+L +++ P +++ Sbjct: 3 KRMKELVAKLNQYAKEYYTEDNPSVSDAEYDKLYRELVALEAEHPELVQADSPT---HRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ + D + E KIDG Sbjct: 60 GGLVLDGFEKYQHEYPLYSLQDAFSREELDTFDKRVKDEFPNAD-----YMAELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ Y G A RGDG GE+++ ++ I IP L L+ P I VRGE Y+ + +F Sbjct: 115 ISLTYVNGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 +N + G +ANPRNAA+G LR+L+ + R L F++ +E Q ++ Sbjct: 173 ERINTQRQENGEAEFANPRNAAAGTLRQLDTKVVAKRRLATFLYQEASPTERLT--QNDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN ++ I + + R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LNEVTELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDYLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ LL +D Q+GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R +P P+ CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQ-EPMEVPTQCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC +C AQ E L HF SRDA NI G+G ++ F++ Sbjct: 399 GSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFQA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E ++ ADI+ L ++ + GF + S LY +I + S E+ ++ L Sbjct: 452 E----LVKDVADIYGL------NSQDFLQLEGFKEKSAEKLYAAIQTSKENSAEKLLYGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA++++ L + + + ++ A + D ++ V +G++IA++I ++ Sbjct: 502 GIRHVGAKVSKQLLEAFETIKDLA----------SADVEAIAAVDGLGEVIAKSIQRYFV 551 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHKAQEYVT 671 V+ LLKE+ S G + + ++ + K +V TG L+ ++R +A+ + Sbjct: 552 KEE----VKVLLKELE-SYGINMAYLGQKVADNAILSGKTVVLTGKLEHLKRSEAKAKLE 606 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LGA V+ +S+KTD+++ G + GSKLEKAQ LG+ +++E L L Sbjct: 607 ALGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIDVVDEAWLLNL 652 >gi|255310946|ref|ZP_05353516.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276] gi|255317247|ref|ZP_05358493.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276s] gi|296435662|gb|ADH17836.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9768] gi|296436585|gb|ADH18755.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11222] gi|296437522|gb|ADH19683.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11074] gi|297140021|gb|ADH96779.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9301] Length = 663 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 235/704 (33%), Positives = 379/704 (53%), Gaps = 53/704 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL- 75 +R + +L E+ HD YY ++P I D YD R I P+ S P L Sbjct: 5 SRDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ G+ + V HS P LS+ ++++++L +F +R +K S ++LE KID Sbjct: 65 DRPSGQFPV----VPHSSPMLSIANVYSLQELEEFFSRT----EKLLGYSPGYSLELKID 116 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + IRYEK F A RG+G GED++A + I ++P L PE +EVRGEV++S Sbjct: 117 GIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSY 176 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 F LN G+ +ANPRNAA G L+ L+ + R L+ V+GL +E + Sbjct: 177 EAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITEQKKRSH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ GF V +Q + +V E++ +R LP IDG+V KVD + Q + Sbjct: 235 FENLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRVALPMAIDGVVIKVDNIAHQDR 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+ Sbjct: 295 LGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLY 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D I+ +DIR+GD V V++ GEVIPK+V I + +R +++P+ PS C Sbjct: 355 NQDEIE-----------KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C VV++ + RC L CS LE++ F S+ A NI+ LG++ + Sbjct: 404 PVCHEPVVKE--------KVSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ I +DIF L + ++ + GF D S+ NL SI + ++L+R + Sbjct: 455 FE----VGLISSCSDIFAL------TEEDLKQVPGFKDRSIQNLLASIAGAKKVTLDRLL 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +L I VG+ A +LA ++ + ++ +I + D+ L+ + +G +A +IV Sbjct: 505 TALSIPFVGSSGAIALADHFGT-------LDKVIEASLDE---LMSIEGIGPKVAASIVA 554 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ N + ++E+ + + + + ++ K V TGTLQ++ R +A+E + LG Sbjct: 555 FFSKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLG 613 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS+ +S+ T +I G G KL+KAQ LG+ I NE + L +L Sbjct: 614 GKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRIL 657 >gi|319760626|ref|YP_004124564.1| DNA ligase [Candidatus Blochmannia vafer str. BVAF] gi|318039340|gb|ADV33890.1| DNA ligase [Candidatus Blochmannia vafer str. BVAF] Length = 598 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 215/611 (35%), Positives = 333/611 (54%), Gaps = 49/611 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY ++ D EYD + + +P L P L KI + + +V H P Sbjct: 22 YYLKNESETSDEEYDKTLQELRQLEFEYPCLITENSPTKFLGKI---LENNFRQVYHRAP 78 Query: 95 TLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 LSL + N L F RI Y+ + SI + E KIDG I++ Y+ GK + AA Sbjct: 79 MLSLNSVMNKSQLLLFNDRIEYKLRDNNQNKSIIYCCELKIDGVAISLLYKSGKLLKAAT 138 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKNDFLALNDEMIAVG 209 RGDG GEDV+ +R + +IP L N +P ++E+RGE++ISK FL LN +++ G Sbjct: 139 RGDGKIGEDVTKNVRVVSSIPECLRKNDGMQLPYLLEIRGEIFISKLCFLKLNQKILKSG 198 Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT--SEIFAKGQYEMLQKMRCLGF 266 KP++N RNAASG LR+LNP +R L F+ +G+ ++ ++ LQ LG Sbjct: 199 NKPFSNARNAASGSLRQLNPNITASRSLMFYCYGISYYVGADELPNSHWDRLQLCLKLGI 258 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 P+N+ ++ N ++ YY+ + IRS L YDIDG+V KVD QK+LG R+P W I Sbjct: 259 PINDHIQLVNGVDKVLKYYDHITYIRSNLKYDIDGIVVKVDNCVFQKKLGYGTRAPHWAI 318 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++KF + T+L DI ++GRTG++TP+ ++P+ I +I ++HN + I+ Sbjct: 319 AYKFPAESKLTQLNDIIFKVGRTGLITPIVYIKPIVINNVVIKKVSMHNVNEIRRF---- 374 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 ++ GD VLV+R+G+VIPK+V +I+++R D + + P FCP+C + ++ N Sbjct: 375 -------NLMFGDTVLVQRSGDVIPKIVKVILSKRTNDMKVITLPQFCPVCGTLLITS-N 426 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 ++ L RC L C AQ+ LKHFVSR A NI G+G++ ++ ++ FS Sbjct: 427 CRSSVL----RCPAKLICLAQRKSMLKHFVSRKAMNIHGMGEKVINQLV-DKNLVFS--- 478 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 P D F L R + N+ G+G SV L SI+ ++ +L FI++LGI +VG + Sbjct: 479 PVDFFYLNRENL-----LFNLDGYGVKSVEKLLRSIDLAKHTTLANFIYALGIPNVGESV 533 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 A SLA Y + I +I+ D+ SL + VGD IA I F+++P N+ ++ Sbjct: 534 ANSLAVKY-------KTIEKLISA---DFQSLSTLQYVGDSIAFTIYSFFKDPINLKNIK 583 Query: 627 ALLKEVSPSIG 637 L ++P IG Sbjct: 584 DL---INPDIG 591 >gi|219682005|ref|YP_002468389.1| DNA ligase (NAD+) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254781272|sp|B8D6X9|DNLJ_BUCAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219621738|gb|ACL29894.1| DNA ligase (NAD+) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085811|gb|ADP65893.1| DNA ligase (NAD+) [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086384|gb|ADP66465.1| DNA ligase (NAD+) [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 676 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 239/729 (32%), Positives = 388/729 (53%), Gaps = 74/729 (10%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE+ RK L L+ E YH ++ II D+EYD L R+ + +L S+ P Sbjct: 8 IEKLRKIL--LKYEYFYH-----TLNQSIISDAEYDYLFRQLYELELKNKELIPSDSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 K+G + K+ H P LSLE +++ F RI + ++ + F E K Sbjct: 60 --QKVGSHILQKFKKIKHFSPMLSLENTFDVNGYLNFKKRIKKSIH--NNEPLSFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG I+I YE+G FV AA RGDG GE++++ R I +IP ++ ++IP+ +E+RGEV+ Sbjct: 116 LDGVAISIIYEEGIFVRAATRGDGFEGENITSNARMIDSIPLKLKGIDIPKRLEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 + K++F+ LN + K ++NPRNAA+G LR ++P +IT R L F HG + F Sbjct: 176 MLKSNFIKLNKKYKLNQNKYFSNPRNAAAGSLRHIDP-NITAERKLIFSCHG----CDFF 230 Query: 251 AKGQYEMLQK----MRCL--GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 K E+ M+CL G PVN + ++ I+ +Y ++ R+ L +DIDG+V Sbjct: 231 VKTNKELTTHYQRLMKCLSWGIPVNKEIVICSSDIEIIQFYKKIAQKRNFLDFDIDGIVI 290 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV+ LQK++G +SPRW I+ KF+ K+ T L D+ Q+GRTG++TPVA PV I Sbjct: 291 KVNSLELQKKIGSTTKSPRWAIAFKFSPKERITTLNDVKFQVGRTGVITPVAYFNPVYIS 350 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +I+ A+LHN++ I+ L ++ D + + R+G+VIP+++++I R + Sbjct: 351 GVMISKASLHNKNEIERL-----------NLHFNDTITICRSGDVIPRLLNVIEIRRCDN 399 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+ FPSFCP+C + ++ ++ K RC GL C AQ+ + L HF S+ + + Sbjct: 400 AKKIIFPSFCPVCNTELLENIEEK------LIRCHSGLTCDAQKKQALYHFFSKKSLYVV 453 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG + ++ + ++ P D F L + +++N+ G + +SI K Sbjct: 454 GLGPKIINELVEKG----LVKNPIDFFYL---KDIDLIQLKNV---GKRKSIKIINSIKK 503 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L+ FI++LGI VG +A +A Y++ N + L L + V Sbjct: 504 CKKTTLKCFIYALGIPGVGEVVAGKIANYFIKLDKLM----------NSNILELNCISGV 553 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSE---IENKKLVFTGTLQK 660 G II+ I ++ N V L+K+ + E ++SE NKK+V TG + Sbjct: 554 GKIISNNIFNYFSTISNREMVVKLIKQAGIFLNDQEIHKINSEKTYFFNKKIVLTGVFKS 613 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + + + LGA +S +SRKTD +I G+N GSK +A+ L VKI+N+E+ Sbjct: 614 FSRIELKTILLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQEEL------ 667 Query: 721 YNTTLRIHD 729 N+ +RI + Sbjct: 668 -NSLIRIKE 675 >gi|328885211|emb|CCA58450.1| DNA ligase [Streptomyces venezuelae ATCC 10712] Length = 726 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 233/750 (31%), Positives = 373/750 (49%), Gaps = 81/750 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR++ + L ++I H YY +P+I D E+D L R +A+ +P+L P+ P Sbjct: 11 EAREKHAELAEQIEEHRFRYYVKDQPVISDGEFDKLLRALEALEEEYPEL---RTPDSPT 67 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G+ V H LSL+ ++ E+L + R+ R D + E K+D Sbjct: 68 QKVAGQYETDFTSVEHRERMLSLDNAFDDEELTTWADRVARDVGTPD---FHYLCELKVD 124 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G+ AA RGDG +GED++ +R I IP R+ +P+++E+RGEVY Sbjct: 125 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIADIPERLRGDRVPDLVEIRGEVYFP 184 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF--- 250 F LN ++ G KP+ANPRNAA+G LR+ +P +R L+ VHG+G E F Sbjct: 185 MEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIG-AREGFDIS 243 Query: 251 -AKGQYEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 YE+L + G P N V ++Y+ E R ++ ++IDG+V K+ Sbjct: 244 RLSDTYELLHEW---GLPTAKHNKVVGSLGEVREFIAYFGEN---RHSVEHEIDGVVVKL 297 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 DE LQ +LG AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ Sbjct: 298 DEIPLQGRLGSTARAPRWAIAWKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVAGS 357 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN++ +K + + +GD V++++AG+VIP+++ + + R + Sbjct: 358 EVEFATLHNQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSER 406 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P+ CP C + + K G + RC C AQ ERL R +IE Sbjct: 407 EFVMPAECPECGTPL---KAMKEGDI--DLRCPNARTCPAQLRERLFFLAGRQCLDIENF 461 Query: 487 GKQQLDFFFKSEDPA----------FSIRI----PADIFTL-------QRRQQTSTTKIE 525 G + +PA F + I P + L +R +T KI Sbjct: 462 GAVAAAALTRPLEPAEPPLVDEGDLFDLTIEQLLPIKAYVLDPDSGLPRRDPKTGEEKIV 521 Query: 526 NIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 + G + + ++I + L RFI L IRHVG A +LA+ + S + Sbjct: 522 TVFANQKGEPKKNALAMLENIAAAKTRPLARFINGLSIRHVGPVAAEALAREFRSLERIE 581 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 Q L V VG IIA A+ +++ + E + K + + ++ Sbjct: 582 QASEE----------ELAAVDGVGGIIAAAVKQWFSEEWH---REIVRKWRAAGVSLEDE 628 Query: 642 NVSSEI-----ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 ++ E +V TGTL+ R A+E + LGA V+ +S+KT ++VG+NPGS Sbjct: 629 GAGEDVGPRPLEGLTVVVTGTLENFTRDGAKESLQSLGAKVTGSVSKKTSFVVVGENPGS 688 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 K +KA QL V +++E+ F LL+Q R Sbjct: 689 KYDKAMQLKVPVLDEDGFKVLLEQGPEAAR 718 >gi|325684644|gb|EGD26799.1| NAD-dependent DNA ligase LigA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 671 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 222/718 (30%), Positives = 380/718 (52%), Gaps = 55/718 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S+E+A++E+ L ++ YY+ P++ D YD R + A+P+L ++ Sbjct: 2 AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELKSADS 61 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 ++GGE+N L KV H +P LS+ +++ E+L +F R+ QK + + + + Sbjct: 62 IT---QRVGGEVNSDLPKVEHQVPMLSMGDVFSKEELAEFDQRV----QKAIGHPVAYNV 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YE+G+ A+ RG+G GEDV+ ++ I +P+ L I EVRGE Sbjct: 115 ELKIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTSE 248 Y+SK F LN E G +ANPRNAA+G LR+L+P R L+ F++ + + Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAG 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 I Q++ + +M LGF N R+ + Y +E R +LPY IDG+V KVD+ Sbjct: 233 I--DSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDD 290 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G + Sbjct: 291 LALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGTTV 350 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN D + L D+R+GD V + +AG++IP++ ++++++R D+ P+ Sbjct: 351 ARASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPY 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V LN + A RC +C AQ E + HF SR A NI GLG Sbjct: 400 EVPTKCPSCGEDLVH-LNEEV-----ALRCINP-SCPAQVEEGITHFASRQAMNIAGLGP 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + ++D ++ AD++ L + + + F + S+ NL +I++ R Sbjct: 453 KIVKQLI-AKDLVHNV---ADLYYL------TADDLSQLDHFKEKSINNLLAAIDQSRKN 502 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI +VG + A Q AQ+ N+ + L + +G I Sbjct: 503 SVELVLFGLGIDNVGGKAA----------QLIAQKFKNMSKIASASVQELTAIDTIGMTI 552 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++Q + A L+E + +G + + + K +V TG L R + Sbjct: 553 AESLTAYFQQ-EEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAE 611 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + + LGA V+ +S+KTD ++ G++ GSKL KA+ L + + E + + +++ +T Sbjct: 612 FTKKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669 >gi|149195296|ref|ZP_01872384.1| NAD-dependent DNA ligase LigA [Caminibacter mediatlanticus TB-2] gi|149134560|gb|EDM23048.1| NAD-dependent DNA ligase LigA [Caminibacter mediatlanticus TB-2] Length = 682 Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 234/734 (31%), Positives = 389/734 (52%), Gaps = 87/734 (11%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+ +K + +L++ Y YY P++ D EYD L + + PD D P Sbjct: 6 EEYKKAVETLKKWAYY----YYVLDNPLVTDEEYDKLYKEVEEYEKNHPDEV---DKTSP 58 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDL---RKFITRIYRFWQKKDDNSIFFTLE 131 +IG ++ L FK I K+W++ED+ +FI + R + +++ F +E Sbjct: 59 TQRIG-DVVLDEFKKAKHIT-----KMWSMEDVFDKNEFIDWVNRVKRAIGNDNFSFYIE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK DG + + Y+ G+ + A RGDG GEDV+ + I TIP L++ +IE+RGEV Sbjct: 113 PKFDGASLNLVYKNGELIRAETRGDGEIGEDVTLNAKTIKTIP--LTIKYKGLIEIRGEV 170 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 I K DF LN+E I G +ANPRNAA+G LR+L+P R L F+ G+G E+ Sbjct: 171 VIKKQDFDKLNEERIKKGEPTFANPRNAAAGSLRQLDPKITANRPLLFYPWGVGYPIEVL 230 Query: 251 -----AKGQYE-----MLQKMRC----------LGF--PVNNGVRQANTFHGIVSYYNEM 288 +K +YE ++K + LGF P G +A+ ++ YNE Sbjct: 231 ISDEVSKEEYERDKKEFIEKFKTYKNIMDFVYSLGFKEPPKRGECKASDIECVLKKYNEF 290 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 IR +P +DG+V KV+E +L + LG A+ PRWM+++KF + T + D+ +Q+GR Sbjct: 291 VEIRDEIPVMLDGMVVKVNELNLLENLGYTAKYPRWMVAYKFPAIEKETIIEDVIVQVGR 350 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG+LTPVA L+P+ IGG ++ ATLHN D I+ + DIR+GDRV+V R+G+ Sbjct: 351 TGVLTPVAILKPIEIGGVIVERATLHNFDEIERM-----------DIRIGDRVIVIRSGD 399 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 VIPK+ ++ ++R + + P+ CP+C S V+ + G ++ +C L+C A+ Sbjct: 400 VIPKITKVLYHKRTGNEKKIPRPTHCPVCGSEVLDE-----GAII---KCQ-NLSCPARV 450 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + + + S++ +IEGLG+ ++ ++ D+F L+ +E + Sbjct: 451 VNTIIYAASKNCLDIEGLGESVAKLLYEKG----LVKDIRDLFKLK------VEDLEKLP 500 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 F NL ++I+K + I RF+ +LGI H+G ++ + + F E Sbjct: 501 LFARKKAENLVNAISKVKGIECWRFVNALGIEHIGEVASKKIC------EKFGVE---FY 551 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 H+ +++ L G + ++I E+ + ++ +E L+K + P+ + E V+S Sbjct: 552 KHSPEEFYEL---EGFGPEMVKSIAEYVKVNKD--KIEELIKLIEPTNPKKEV-VNSPFT 605 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TG++ K R + +E + LGA V+ +S+KTD +IVG++PGSK EKA++LG+ I Sbjct: 606 GKTVVLTGSMSK-SRSEIKEMLENLGAHVTNSVSKKTDYVIVGEDPGSKFEKAKKLGITI 664 Query: 709 MNEEQFLFLLQQYN 722 + EE ++ N Sbjct: 665 LKEEDMWNMIGDGN 678 >gi|34558095|ref|NP_907910.1| NAD-dependent DNA ligase LigA [Wolinella succinogenes DSM 1740] gi|81653397|sp|Q7M8A0|DNLJ_WOLSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|34483813|emb|CAE10810.1| DNA LIGASE POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+] [Wolinella succinogenes] Length = 650 Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 240/688 (34%), Positives = 363/688 (52%), Gaps = 59/688 (8%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P+ D EYD L A P+ P P +IGG K +H Sbjct: 19 AYYVLDAPLATDEEYDQLYHEALAFERQNPERIH---PASPTQRIGGAPLEGFQKASHLE 75 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 SLE +++ +L+ + R+Y+ + F +PK DG + + YE+G+ V AA Sbjct: 76 RMWSLEDVFDFGELKSWAERLYKQFPHAT-----FVCDPKFDGASLNLLYEEGRLVRAAT 130 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GEDV+ R IP+IP LS+ + E IE+RGEV I K DF L +E + P+ Sbjct: 131 RGDGLIGEDVTQNARTIPSIP--LSIPLLERIEIRGEVVIPKEDFEKLQEERLRENESPF 188 Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY-EMLQKMRCLGFPVNNG 271 ANPRNAA+G LR+L+P R L F G+G + F G + E+++ + GF + Sbjct: 189 ANPRNAAAGSLRQLDPAITAKRKLRFIPWGVG--AHPFKTGSFFEIMKSLESYGFIRSPE 246 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + + H I Y + S RST P +DG+V +VDE + Q++LG ++PR+ ++KF Sbjct: 247 RTRCHNIHEIERVYALLVSERSTHPVMLDGMVVRVDEIAYQRELGYTIKAPRFACAYKFP 306 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + RLL I +Q+GR+G++TPVA LEPV I GA+I+ ATLHN D IK L Sbjct: 307 AIEKKARLLSITLQVGRSGVVTPVANLEPVEIEGAMISRATLHNFDEIKRL--------- 357 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+R GD V + R+G+VIPK++ + R + +P S P+ CP C S ++ + Sbjct: 358 --DVREGDWVSLIRSGDVIPKIIQPFAHLRSGEEKPLSRPTHCPECGSELLVE------- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 +C L+C A+ L HF S+ A NI+GLG++ ++ F+ A I+ D+F Sbjct: 409 -EVLIKCQ-NLSCPARIKNSLIHFASKKALNIDGLGEKIIEQLFE----AGLIKEFEDLF 462 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 +L + S + GF + NL D+I R L RFI +LGI H+G A+ L+ Sbjct: 463 SLTKESLLS------LEGFKEKKAQNLLDAIQGVRGCDLWRFINALGIEHIGEGAAKKLS 516 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + A + N H ++I + G+ +AQ+++EF + N +E LL Sbjct: 517 HAF----GLAFHLQN---HE-----AIIGLEGFGEEMAQSLLEFCRV--NHERIEHLLGL 562 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + P S I K V TGTL + H E +T LGA V + +S+K+D ++ G Sbjct: 563 IEPLAPIQLTPQDSPIAGKSFVITGTLSAPREHFV-ELLTSLGAKVVSSVSKKSDFLLYG 621 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ GSKLEKA++LGV+ +NEE+ +L+ Sbjct: 622 ESAGSKLEKARELGVRCVNEEELGEILE 649 >gi|254442845|ref|ZP_05056321.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235] gi|198257153|gb|EDY81461.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235] Length = 718 Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 236/713 (33%), Positives = 367/713 (51%), Gaps = 54/713 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+ R L L EI+ HDD YY+ + P I D++YDALKR + +PDL +D Sbjct: 49 ERGRGRLVELRAEIARHDDLYYRKAAPEISDADYDALKRELHRLEELYPDL---QDGLLI 105 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +++IG + + + H P LSLEK + E L F R+ ++ + + +EPK+ Sbjct: 106 VDEIGDDRSGVRGEFRHFAPMLSLEKAYTEEALLSFYDRVLSQLTFEELDCL---VEPKV 162 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYI 193 DG I++ YE+G+FV A RG+G GEDVS + I +PR L + PE +E+RGEVY+ Sbjct: 163 DGMAISVLYERGEFVRAVSRGNGRVGEDVSENVLRIEGLPRRLETESPPERVELRGEVYV 222 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN--FFVHGLGKTSEIF 250 S F LN+ +A G +P+A+PR+ A+G L+ +P ++ R L+ FF +G + E Sbjct: 223 SFEGFRRLNEARVAAGEEPFAHPRSLAAGSLKLDDPEVVSERSLSIVFFGYGAFEPVEEA 282 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q + G PV +R+ +++ EM+ R P+ +DG V K+D Sbjct: 283 PETQSGFYGLAQSWGIPVLEELRKTRGTEALLAAVREMEERRVLYPFPMDGAVVKIDRAD 342 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q++LG +PRW +++KFAEK+ TRLL I IQ+GRTG+LTPVA LE + +GG+ I Sbjct: 343 VQRELGLGTSAPRWAMAYKFAEKRVETRLLGIRIQVGRTGLLTPVAELEEIRLGGSSIRR 402 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN I+ + D+R+GD V ++RAGEVIP VV + + +R + + F Sbjct: 403 ASLHNGGVIERM-----------DLRIGDVVYLERAGEVIPNVVGVNLAKRKSSSTKYVF 451 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C D G++ R + C AQ +++HF S A IEG+G + Sbjct: 452 PDLCPSCGYAAELD----EGRVERYCRSS---TCPAQAQRKIEHFASSRAVGIEGIGPAK 504 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT-NLYDSINKRRNIS 549 + A + AD++ L+ G G +V L I+ R S Sbjct: 505 IADLMD----AGLVETVADLYLLEVPDLVQA-------GVGSEAVARKLVSEISGSRAAS 553 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV--GDI 607 L R +F LGI VG ++ LA Y FA+ + D+ R V G + Sbjct: 554 LWRVLFGLGIPEVGVSRSKKLAAAYGDLAAFAR-------ASALDFSPGGRAAEVGFGPV 606 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHK 665 +A++ + N E + + V +G + + SE+ VFTG L+ + R + Sbjct: 607 AREAVLAYLSLDEN---RELIGRLVELGLGARSEVMDTRSEVAGTIFVFTGALEGLSRKE 663 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A V GA + +S D ++VG PG+KL+KA++LGV+++ E+F LL Sbjct: 664 AMALVEAAGAETRSAVSSACDFLVVGKEPGAKLQKARELGVEVIGLEKFRRLL 716 >gi|168705071|ref|ZP_02737348.1| NAD-dependent DNA ligase [Gemmata obscuriglobus UQM 2246] Length = 678 Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 222/699 (31%), Positives = 365/699 (52%), Gaps = 47/699 (6%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + L +++ +H+ YY + P+I D E+D L + I A P L P+ P ++GG+ Sbjct: 14 AELRKQLDHHNYLYYVEAAPVISDREFDTLLKELADIERANPGLVT---PDSPTQRVGGQ 70 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 +VTH P LS++ ++ DLRKF + + ++ + E KIDG +++ Sbjct: 71 PIPGFKQVTHKTPMLSIDNSYDEGDLRKFDADVRK--AVGPGAAVDYVTELKIDGVSMSL 128 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLA 200 YE G +AA RG G G+DV+ I+ I IP ++ + N P I EVRGEVY+++ + Sbjct: 129 TYENGVLAFAATRGSGTVGDDVTHNIKTIAAIPLKLKTSNPPAIFEVRGEVYMTRGELAR 188 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 +N E ++PY N RN +G L+ +P + TR L FF +G G + Q ML Sbjct: 189 INAEQAKGNQEPYKNARNLTAGTLKLKDPRECATRKLAFFAYGSGDIGGLAITTQAAMLA 248 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 K++ GFPVN R + +++Y E + R L YD DG+V KV++++ ++++G A Sbjct: 249 KLKEFGFPVNPHERVCGSIDEVIAYCQEWEPKRKELAYDTDGIVVKVNDWAQRERIGYTA 308 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE-PVNIGGALITNATLHNEDY 378 + P+W ++KF +QA+T+L + +G+ G LTPVA + PV + G +T+A++HN + Sbjct: 309 KVPKWAKAYKFEAEQATTKLGKVVFYLGKFGELTPVATFDPPVQLAGTTVTHASMHNASW 368 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 + RD+R+GD V+V++ GE+IP+VVD+I +R Q ++P CP C Sbjct: 369 V-----------AERDVRIGDTVVVEKKGEIIPQVVDVIKADRTGAEQVITWPDKCPKCG 417 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 V ++ + + + A+ TG C AQ +RL+ F + I+GLG++ +E Sbjct: 418 GPVEKEESATSYNFICAN--TG--VCPAQLAKRLEGFAKKTRMEIDGLGREVAVQLVDTE 473 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 ++ AD++ L + Q + + GF D NL D I + L R + L Sbjct: 474 ----LVKSVADLYRLTKAQLLA------LEGFKDKKAQNLLDGIAASKGRGLARLLPGLT 523 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I VG ++ L + + +I+ IIA +D L RV G AQ + F+ + Sbjct: 524 IYMVGEAMSDLLVEEF-------PDIDLIIAAAPED---LARVKGFGPKRAQFVRAFFDS 573 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + A LK+ + +K + + K +V TGTL R ++ + GA Sbjct: 574 ESGRQLI-ADLKQFGIKMTHDKKAAPTGGLPLAGKTVVVTGTLVNYDRIGIEQAIKDAGA 632 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 S +S+KTD ++VGD PGSK +KA++LGVKI+NE +F Sbjct: 633 KASGSVSKKTDFVLVGDKPGSKADKAKELGVKIINEAEF 671 >gi|298208451|ref|YP_003716630.1| DNA ligase [Croceibacter atlanticus HTCC2559] gi|83848374|gb|EAP86243.1| DNA ligase [Croceibacter atlanticus HTCC2559] Length = 664 Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 224/711 (31%), Positives = 372/711 (52%), Gaps = 59/711 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + ++ L +E+ H+ YY KP I D ++D ++ + P+ D N P + Sbjct: 4 KDQIQQLREELRQHNYNYYVLDKPEISDYDFDQKLKQLQDLETENPEFY---DANSPTLR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ + TH SL+ ++ EDL + RI + D + +T E K DG Sbjct: 61 VGGQVTKNFDTTTHDYRMYSLDNSYSKEDLEDWEKRIMKMV----DGDVHYTCELKYDGA 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G+ + A RGDG G++V+ ++ I +IP L+ + P+ ++RGE+ + Sbjct: 117 SISLTYEDGELIRAVTRGDGFKGDNVTNNVKTIRSIPLKLNGDYPKRFDIRGEIILPLEG 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-GKTSEIFAKGQY 255 F +N E +A G + YANPRN ASG L+ + T+++ R L+ ++ + GK + K Q+ Sbjct: 177 FTKMNAERVANGEEAYANPRNTASGSLKLQDSTEVSKRPLDCLLYSIIGKN--LNFKTQF 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L+K R GF V A + ++++ N + R LPY+ DG+V KV+ Q++L Sbjct: 235 EGLEKAREWGFKVPEVATLAKSTKEVMAFVNYWDTHRHDLPYETDGVVIKVNNLQQQEEL 294 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A++PRW +++KF +Q ST L I Q+GRTG +TPVA L PV + G + A+LHN Sbjct: 295 GYTAKAPRWAMAYKFKAEQVSTVLEKITYQVGRTGAITPVANLIPVQLAGTTVKRASLHN 354 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L DIR D V V++ GE+IPK++ + +R +++P + CP Sbjct: 355 ADQIEKL-----------DIREEDTVFVEKGGEIIPKIIGVDFTKRDKNSKPTQYIEHCP 403 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C++ +VR+ A H C C Q + R++H++SR A +IEGLG + + Sbjct: 404 ECETPLVRNEGE------AQHYCPNEERCPPQVVGRIQHYISRKALDIEGLGGETVALLA 457 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLER 552 A I+ AD++TL KIE++L S NL + I + I ER Sbjct: 458 N----AGLIKNYADLYTL---------KIEDVLPLERMAQKSAENLINGIEASKQIPFER 504 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRHVG +A++L K + + +N A N L+ V +G IA+++ Sbjct: 505 VLFGLGIRHVGETVAKTLVKTFKTIENLA----------NAKEEELVEVEEIGGKIAESV 554 Query: 613 VEFYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 V F+ + V+ LKE + + ++++E + +V +G K+ R + ++ Sbjct: 555 VVFFSDEYKKETVQR-LKEYGVQLEISAEQLQGQTNKLEGEIIVVSGVFNKLSRTELKKA 613 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + G VS+ +S KT ++ G+N G SK KA+ L V I+ E++FL +Q Sbjct: 614 IEDNGGKVSSSISSKTTYLVAGENMGPSKRTKAEGLNVPIITEDEFLDKIQ 664 >gi|148243508|ref|YP_001228665.1| NAD-dependent DNA ligase LigA [Synechococcus sp. RCC307] gi|166216253|sp|A5GWQ3|DNLJ_SYNR3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147851818|emb|CAK29312.1| NAD-dependent DNA ligase [Synechococcus sp. RCC307] Length = 675 Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 223/707 (31%), Positives = 363/707 (51%), Gaps = 54/707 (7%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + L Q ++ YY P D+ YD L R + PDL ++ P ++GG Sbjct: 12 AELRQLLNRAAHAYYVLDAPEFEDAVYDRLYRELLDLEQQHPDLLSADSPT---QRVGGP 68 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 V H I LSL+ +N E+L+ + R+ R + + + E KIDG + + Sbjct: 69 PAEGFSSVEHRIGMLSLDNAFNAEELQAWDARLGRQLEDNPERQREYVCELKIDGNALAL 128 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLA 200 Y G V AA RGDG GE+++A +R I +P L L P +EVRGE +I + F A Sbjct: 129 SYADGVLVRAATRGDGSRGEEITANVRTIQAVPLRLQLKQPPAWVEVRGEAFIPDDTFEA 188 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-KTSEIFAKGQYEML 258 +N E G +ANPRNA +G LR+L+P + R L+FF + + E+ K Q++ L Sbjct: 189 INAERQQRGEALFANPRNACAGTLRQLDPKAVAARRLDFFAYTVHLPADEMGPKSQWDAL 248 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 Q + GF VN + + G+V++Y+ + R LPY DG+V K+D Q+ G Sbjct: 249 QWLETAGFRVNPHRERTSGADGVVAFYDRWEEQRHQLPYATDGVVVKLDALERQQLAGFT 308 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++PRW I+ K+A ++A +RLL + Q+GRTG++TPVA E V + G ++ ATLHN D Sbjct: 309 QKAPRWAIALKYAAEEAPSRLLRLVAQVGRTGVVTPVAEFEAVPLAGTSVSRATLHNADR 368 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 ++ L D+ GD ++V++AGE+IP+V+ ++ R A+ PS CP C Sbjct: 369 LEEL-----------DLHSGDTIVVRKAGEIIPEVLRVLPELRPEGAEQLELPSHCPECG 417 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S +VR+ +G+ AA RC +C A L+H+VSR A +++GLG + ++ Sbjct: 418 SLLVRE----SGE--AATRCVNS-SCPAILRGALRHWVSRQAMDVDGLGGKLIEQLV--- 467 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 D +R AD++ L S ++ G+ S +NL +++ R R +++LG Sbjct: 468 DRGL-VRSIADLYRLDAALLASLERM------GEQSASNLIEALAASRQRPWHRLLYALG 520 Query: 559 IRHVGAEIARSLAKYYLSY---QNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 I H+G+ A++LA + S+ Q+ ++E N + +G I+Q++ ++ Sbjct: 521 IHHIGSVNAKTLAAAFPSWEALQSASEEALNELYG-------------IGPEISQSMQQW 567 Query: 616 YQNPRN---ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 N + + AL L S + + LV TGTL + R +AQ + Sbjct: 568 CSTEANQSLMAELAALELPLASDDSSAESAGAIGALTGQTLVLTGTLPNLSRLEAQALIE 627 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G V+ +S+KT+ ++ G GSKL+KA++LGV +++E + LL Sbjct: 628 AAGGKVTGSVSKKTNYVVAGSEAGSKLQKAEKLGVAVIDEAELKALL 674 >gi|237804493|ref|YP_002888647.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/TZ1A828/OT] gi|231272793|emb|CAX09699.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/TZ1A828/OT] Length = 663 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 235/704 (33%), Positives = 380/704 (53%), Gaps = 53/704 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL- 75 +R + +L E+ HD YY ++P I D YD R I P+ S P L Sbjct: 5 SRDDYIALCAELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ G+ + V HS P LS+ ++++++L +F +R +K S ++LE KID Sbjct: 65 DRPSGQFPV----VPHSSPMLSIANVYSLQELEEFFSRT----EKLLGYSPGYSLELKID 116 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + IRYEK F A RG+G GED++A + I ++P L PE +EVRGEV++S Sbjct: 117 GIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSY 176 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 F LN G+ +ANPRNAA G L+ L+ + R L+ V+GL ++ + Sbjct: 177 EAFEELNACQREQGKLEFANPRNAAGGTLKLLSFKEAAKRKLDLSVYGL--ITDQKKRSH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ GF V +Q + +V E++ +R+ LP IDG+V KVD + Q + Sbjct: 235 FENLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDR 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+ Sbjct: 295 LGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLY 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D I+ +DIR+GD V V++ GEVIPK+V I + +R ++ P+ PS C Sbjct: 355 NQDEIE-----------KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESGPWKMPSLC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C VV++ + RC L CS LE++ F S+ A NI+ LG++ + Sbjct: 404 PVCHEPVVKE--------KVSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ I +DIF L + ++ + GF D S+ NL SI + ++L+R + Sbjct: 455 FE----VGLISSCSDIFAL------TEEDLKQVPGFKDRSIQNLLASIAGAKKVALDRLL 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +L I VG+ A +LA ++ + ++ +I + D+ +S + +G +A +IV Sbjct: 505 TALSIPFVGSSGAIALADHFGT-------LDKVIEASLDELMS---IEGIGPKVAASIVA 554 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ N + ++E+ + + + + ++ K VFTGTLQ++ R +A+E + LG Sbjct: 555 FFSKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVFTGTLQQMTRTQAEERIRSLG 613 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS+ +S+ T +I G G KL+KAQ LG+ I NE + L +L Sbjct: 614 GKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRIL 657 >gi|169630426|ref|YP_001704075.1| NAD-dependent DNA ligase LigA [Mycobacterium abscessus ATCC 19977] gi|254781373|sp|B1MDV2|DNLJ_MYCA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169242393|emb|CAM63421.1| DNA ligase (polydeoxyribonucleotide synthase NAD+) [Mycobacterium abscessus] Length = 681 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 224/708 (31%), Positives = 362/708 (51%), Gaps = 45/708 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +++ L +E+ H YY P+I D ++D L RR A+ +P+L P+ P Sbjct: 6 QRQWGELAEEVRGHQFRYYVKDAPVISDGQFDELLRRLTALEEQYPEL---RTPDSPTQL 62 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +GG ++ F+ V H LSL+ ++ ++L + R+ ++ + + E KIDG Sbjct: 63 VGGAGFVTEFRSVDHLERMLSLDNAFSSDELTAWDARVRGDIGQEPE----YLCELKIDG 118 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVY 192 +++ YE G V A RGDG SGEDV+ R I +P L+ + IP ++EVRGEV+ Sbjct: 119 VALSLVYENGVLVRGATRGDGRSGEDVTLNARTIEDVPERLAKSEKYPIPALLEVRGEVF 178 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 DF ALN ++ + P+ANPRN+A+G LR+ NP IT R L HGLG+ Sbjct: 179 FRLEDFEALNASLVEESKPPFANPRNSAAGSLRQKNPA-ITARRRLRMICHGLGRAEGFS 237 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + ++ + G PV+ + + N R + ++IDG+V KVD + Sbjct: 238 PESLHDAYLALGEWGLPVSTHTTKVRGIAKVQERVNYWAEHRHDVEHEIDGVVVKVDTVA 297 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG +R+PRW I++K+ ++A+T LLDI + +GRTG +TP A + PV + G+ ++ Sbjct: 298 LQRRLGSTSRAPRWAIAYKYPPEEATTELLDIRVSVGRTGRVTPFAYMTPVKVAGSTVSL 357 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN +K R G + +GD V++++AG+VIP+V+ + + R+ + + F Sbjct: 358 ATLHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVADLRNGNEREFVM 406 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + + + K G A RC +C AQ ER+ H R AF+IE LG + Sbjct: 407 PTACPECGTTLAHE---KEGD--ADIRCPNSRSCPAQLRERVFHVAGRGAFDIEALGYEA 461 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 A I D+F L T + G + L D+++K + L Sbjct: 462 AIALLA----AGVIEDEGDLFGLTADDLLRTDLFKTKSGALSANGARLLDNLDKAKQQPL 517 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IRHVG AR+L A E ++ A L V VG IA Sbjct: 518 WRVLVALSIRHVGPTAARAL----------ATEFGDLEAIEGASVEQLAAVEGVGATIAA 567 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 A+V+++ + V+ + + ++ +E +V TG+L R +A+E + Sbjct: 568 AVVDWFSVDWHRAIVDKWRAAGVRTADERDDSIPRNLEGLSIVVTGSLPGFSRDEAKEAI 627 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G ++ +S+KT ++VGD+PGSK +KA +LGV I++E+ F LL Sbjct: 628 IARGGKSASSVSKKTAFVVVGDSPGSKYDKAVELGVTILDEDGFRALL 675 >gi|313123177|ref|YP_004033436.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279740|gb|ADQ60459.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 671 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 222/718 (30%), Positives = 380/718 (52%), Gaps = 55/718 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S+E+A++E+ L ++ YY+ P++ D YD R + A+P+L ++ Sbjct: 2 AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELKSADS 61 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 ++GGE+N L KV H +P LS+ +++ E+L +F R+ QK + + + + Sbjct: 62 IT---QRVGGEVNSDLPKVEHQVPMLSMGDVFSKEELAEFDQRV----QKAIGHPVAYNV 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YE+G+ A+ RG+G GEDV+ ++ I +P+ L I EVRGE Sbjct: 115 ELKIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTSE 248 Y+SK F LN E G +ANPRNAA+G LR+L+P R L+ F++ + + Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAG 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 I Q++ + +M LGF N R+ + Y +E R +LPY IDG+V KVD+ Sbjct: 233 I--DSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDD 290 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G + Sbjct: 291 LALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGTTV 350 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN D + L D+R+GD V + +AG++IP++ ++++++R D+ P+ Sbjct: 351 ARASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPY 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V LN + A RC +C AQ E + HF SR A NI GLG Sbjct: 400 EVPTKCPSCGEDLVH-LNEEV-----ALRCINP-SCPAQIEEGITHFASRQAMNIAGLGP 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + ++D ++ AD++ L + + + F + S+ NL +I++ R Sbjct: 453 KIVKQLI-AKDLVHNV---ADLYYL------TADDLSQLEHFKEKSINNLLAAIDQSRKN 502 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI +VG + A Q AQ+ N+ + L + +G I Sbjct: 503 SVELVLFGLGIDNVGRKAA----------QLIAQKFKNMSKIASASVQELTAIDTIGMTI 552 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++Q + A L+E + +G + + + K +V TG L R + Sbjct: 553 AESLTAYFQQ-EEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAE 611 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + + LGA V+ +S+KTD ++ G++ GSKL KA+ L + + E + + +++ +T Sbjct: 612 FTKKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669 >gi|116628243|ref|YP_820862.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMD-9] gi|116101520|gb|ABJ66666.1| NAD-dependent DNA ligase [Streptococcus thermophilus LMD-9] Length = 648 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 226/692 (32%), Positives = 365/692 (52%), Gaps = 67/692 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R + P+L +++ P +++GG + K H P Sbjct: 15 YYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPT---HRVGGLVLDGFEKYQHEYP 71 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F RI + D + E KIDG I++ Y G A R Sbjct: 72 LYSLQDAFSREELDAFDKRIKSEFPNAD-----YMAELKIDGLSISLTYVDGILQVGATR 126 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+++ ++ I IP L L+ P I VRGE Y+ + +F +N + G +A Sbjct: 127 GDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEFERINTQRQENGEAEFA 184 Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 NPRNAA+G LR+L+ + R FF G T + Q ++L ++ LGF VN Sbjct: 185 NPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERLT---QNDVLNEVAELGFSVNPRR 241 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 ++ I + + R L YDIDG+V KV+ ++Q++LG ++PRW I++KF Sbjct: 242 IVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEELGFTVKAPRWAIAYKFPA 301 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 ++ +LL +D Q+GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 302 EEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIT-----------E 350 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR+GD V+V +AG++IP V+ ++ ++R +A P PS CP C S ++ + Sbjct: 351 KDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQEAMP--VPSQCPSCGSGLLHFEDE---- 404 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC +C AQ E L HF SRDA NI G+G ++ FK+E ++ ADI+ Sbjct: 405 --VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLFKAE----LVKEVADIY 457 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L ++ + GF + S LY +I + S E+ ++ LGIRHVGA++++ L Sbjct: 458 GL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLYGLGIRHVGAKVSKQLL 511 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + + + + A + D ++ V +G++IA++I ++ + LLKE Sbjct: 512 ESFGTIKELA----------SADVQAIAAVDGLGEVIAKSIQRYFAKEE----AQVLLKE 557 Query: 632 VSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 + S G + + ++ + K +V TG L+ ++R +A+ + LGA V+ +S+KT Sbjct: 558 LE-SYGVNLSYLGQKVTDDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAKVTGSVSKKT 616 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 D+++ G + GSKLEKAQ LG+++ +E L L Sbjct: 617 DLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 648 >gi|326381521|ref|ZP_08203215.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395] gi|326199768|gb|EGD56948.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395] Length = 692 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 223/705 (31%), Positives = 358/705 (50%), Gaps = 43/705 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E + L +E+ H YY P+I D E+D L RR A+ P+LA ++ P + Sbjct: 13 REWALLAEEVRGHQFRYYVQDAPVISDGEFDTLLRRLQALEDEHPELAVADSPT---KLV 69 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + V H +SL+ +++ +++R +++R + + F E KIDG Sbjct: 70 GGGFSTDFTSVDHLERMMSLDNVFDHDEMRTWVSRT----EAEIGAGTEFLCELKIDGVA 125 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISK 195 + + YE GK V RGDG +GEDV+ R I +P VL +P ++EVRGEV+ Sbjct: 126 LALVYENGKLVRGVTRGDGRTGEDVTLNARTITDVPHVLDDAVRPVPALLEVRGEVFFRV 185 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF LN ++ G+ P+ANPRN+A+G LR+ NP R+L HG+GK + Sbjct: 186 EDFQNLNASLVEDGKAPFANPRNSAAGSLRQKNPQITAKRHLRMICHGIGKIEGWRPESL 245 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ + G PV+ R+ IV + R ++ ++IDGLV KVD+ S Q++ Sbjct: 246 HDAYLALGEWGLPVSKHTRKVTGAGEIVKTIDYWGENRHSVEHEIDGLVVKVDDVSQQRR 305 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW I++K+ ++ +T+LLDI + +GRTG +TP A +EPV + G+ + ATLH Sbjct: 306 LGATSRAPRWAIAYKYPPEEVTTKLLDIMVGVGRTGRVTPWALMEPVLVAGSTVARATLH 365 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N +K R G + +GD + +++AG+VIP+V+ +V R + F P+ C Sbjct: 366 NAFEVK---------RKG--VLIGDTITIRKAGDVIPEVLGPVVELRDGTEREFVMPTNC 414 Query: 435 PICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P C + +L P K G RC +C Q ERL + R AF+IE LG + Sbjct: 415 PECGT----ELAPAKEGD--KDIRCPNQRSCPGQLRERLFYLAGRGAFDIEALGYEGAQA 468 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 S + D+F+L T G + D+++K +++ L R Sbjct: 469 LLSS----GVLADEGDLFSLTADDLIKTDLYTTKAGALSANGKRFLDNLDKAKHVPLWRV 524 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I +L IRHVG AR+LA + ++ I A + +D L +V +G A ++ Sbjct: 525 IVALSIRHVGPTPARALATAF-------GDLEAIQAASVED---LAQVDGLGPTRAASVH 574 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +++ + V + ++ +E K +V TG+L R A+E + Sbjct: 575 DWFAVDWHREIVAKWRAAGVSMADERDDSIERTLEGKTIVVTGSLVDFSRDGAKEAIISR 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 G S +S+KTD ++VG+ GSK +KA+QLGV I++E+ F LL Sbjct: 635 GGKASGSVSKKTDYVVVGEAAGSKADKAEQLGVPILDEDGFKELL 679 >gi|290957204|ref|YP_003488386.1| DNA ligase [Streptomyces scabiei 87.22] gi|260646730|emb|CBG69827.1| putative DNA ligase [Streptomyces scabiei 87.22] Length = 739 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 235/742 (31%), Positives = 373/742 (50%), Gaps = 78/742 (10%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ + L ++I H YY P++ D+E+D L R +A+ + +L P+ P K Sbjct: 23 REKHARLAEQIEEHRFRYYVKDAPVVSDAEFDELLRTLEALEDEYGEL---RTPDSPTQK 79 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL--EPKID 135 + E L +V H LSL+ +++ E L + R+ KD + + L E KID Sbjct: 80 VAVEYETDLAEVEHRERMLSLDNVFDDEGLAAWAERV-----AKDVGTTDYHLLCELKID 134 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G+ AA RG G +GED++ +R I IP R+ +P ++E+RGEVY Sbjct: 135 GLAVNLTYEDGRLTRAATRGTGRTGEDITPNVRTIAEIPHRLKGDRVPRLVEIRGEVYFP 194 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 F LN+ +A G KPYANPRN+ASG LR+ +P T L+ VHG+G E F G Sbjct: 195 MEAFQGLNERRVAAGEKPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAL-EGFDGG 253 Query: 254 ---QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVD 307 E +R G P R + G+ ++YY E R ++ ++IDG V K+D Sbjct: 254 FTRLSEAYDLLRSWGLPTAEHNRVVDDLDGVREFIAYYGEN---RHSVAHEIDGAVVKLD 310 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E LQ +LG AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ Sbjct: 311 EIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVAGSE 370 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQ 426 + ATLHN++ +K +++ +GD V++++AG+VIP+++ +V+ R + + Sbjct: 371 VEFATLHNQEVVK-----------AKNVLIGDTVVIRKAGDVIPEILGPVVDLRDENETR 419 Query: 427 PFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 PF P+ CP C + L P K G + RC +C AQ ER+ + R+ +IE Sbjct: 420 PFVMPTECPECGT----PLRPMKEGDI--DLRCPNARSCPAQLRERVSYLAGRECLDIEH 473 Query: 486 LGKQQLDFFFKSEDPAFSIRI-PADIFTL--------------------QRRQQTSTTKI 524 G + +PA + D+F L + +T K+ Sbjct: 474 FGGVAAAALTRPLEPADPPLVDEGDLFDLTVEKLLPIKAYVLDADSGLPKHDPKTGEPKV 533 Query: 525 ENIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580 + G + L I + ++ L RF+ L IRHVG A++LA+ + S Sbjct: 534 VTVFANQKGEPKKNTLALLQKIEEAKSRPLARFLNGLSIRHVGPVAAQALAREFRSIDRI 593 Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP--SIGR 638 Q L V VG I+A+A+ E++ + + P G Sbjct: 594 EQATQE----------ELTAVDGVGAIVAKALEEWFAEEWHREIIRKWKAAGVPLEDRGA 643 Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 E +E +V TGTL+ R A+E + GA V+ +S+KT ++VG+NPGSK Sbjct: 644 GEDEGPRPLEGLTVVVTGTLEHHTRDGAKEALQNRGAKVTGSVSKKTSFVVVGENPGSKH 703 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 +KA QL V ++NE+ F LL+Q Sbjct: 704 DKAMQLKVPVLNEDGFAVLLEQ 725 >gi|312278868|gb|ADQ63525.1| DNA ligase [Streptococcus thermophilus ND03] Length = 648 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 226/692 (32%), Positives = 365/692 (52%), Gaps = 67/692 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D+EYD L R + P+L +++ P +++GG + K H P Sbjct: 15 YYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPT---HRVGGLVLDGFEKYQHEYP 71 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F RI + D + E KIDG I++ Y G A R Sbjct: 72 LYSLQDAFSREELDAFDKRIKSEFPNAD-----YMAELKIDGLSISLTYVDGILQVGATR 126 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+++ ++ I IP L L+ P I VRGE Y+ + +F +N + G +A Sbjct: 127 GDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEFERINTQRQENGEAEFA 184 Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 NPRNAA+G LR+L+ + R FF G T + Q ++L ++ LGF VN Sbjct: 185 NPRNAAAGTLRQLDTKVVAERRLATFFYQEAGPTERLT---QNDVLNEVAELGFSVNPRR 241 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 ++ I + + R L YDIDG+V KV+ ++Q++LG ++PRW I++KF Sbjct: 242 IVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAMQEELGFTVKAPRWAIAYKFPA 301 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 ++ +LL +D Q+GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 302 EEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIT-----------E 350 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR+GD V+V +AG++IP V+ ++ ++R +A P PS CP C S ++ + Sbjct: 351 KDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQEAMP--VPSQCPSCGSGLLHFEDE---- 404 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC +C AQ E L HF SRDA NI G+G ++ FK+E ++ ADI+ Sbjct: 405 --VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLFKAE----LVKEVADIY 457 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L ++ + GF + S LY +I + S E+ ++ LGIRHVGA++++ L Sbjct: 458 GL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLYGLGIRHVGAKVSKQLL 511 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + + + + A + D ++ V +G++IA++I ++ + LLKE Sbjct: 512 ESFGTIKELA----------SADVQAIAAVDGLGEVIAKSIQRYFAKEE----AQVLLKE 557 Query: 632 VSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 + S G + + ++ + K +V TG L+ ++R +A+ + LGA V+ +S+KT Sbjct: 558 LE-SYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLEALGAKVTGSVSKKT 616 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 D+++ G + GSKLEKAQ LG+++ +E L L Sbjct: 617 DLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 648 >gi|148927169|ref|ZP_01810794.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1] gi|147887384|gb|EDK72833.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1] Length = 675 Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 221/712 (31%), Positives = 372/712 (52%), Gaps = 52/712 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ L + +S + YY +P + D+ YD+L + P+L ++ P + Sbjct: 7 RERAIKLRELLSQYSYEYYVLDRPSVADAIYDSLFGELKKLEAEHPELITADSPT---QR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG KV H LSL +++ E++ ++ R+ + + D+ FF E K+DG Sbjct: 64 VGGVPIAKFQKVEHRTRMLSLNDVFSREEVEAWLLRVRKLAPEMDEKVEFFA-EVKMDGL 122 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN------IPEIIEVRGEV 191 ++ YE GK V A RGDG GEDV++ +R IP++P L N + I EVRGE+ Sbjct: 123 ACSLIYENGKLVRAVTRGDGLVGEDVTSNVRTIPSVPLALRTNKEDWRFLKGITEVRGEI 182 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 + K DF LN ++ G+K YANPRN A+G +R+L+P + R L F + L + Sbjct: 183 VMFKKDFELLNAQLEQEGKKTYANPRNLAAGTIRQLDPRLVAQRKLYFLAYDLLRDDPAE 242 Query: 251 AKGQYEMLQKM-RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +EM ++ R LGF N + + +V + + R LPY+ DG+V K+++ Sbjct: 243 VP-TWEMAYRIVRELGFRSNRDAKVIQSVDELVEFAESWEKKRFDLPYNTDGMVIKLNDR 301 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +L + LG ++PR I++K+ +QA+TR+ DI + IGRTG TPVA LEPV I G+ + Sbjct: 302 ALYRALGVVGKNPRGAIAYKYPAEQATTRIKDIFVSIGRTGAATPVAMLEPVVIAGSTVQ 361 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNED +K R G + +GD V+V++AG++IP+V+ I R+ + F Sbjct: 362 MATLHNEDEVK---------RKG--VLIGDTVVVQKAGDIIPEVISPIEKLRNGSEKAFK 410 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C++ +VR A RC + C A+ ++HF S+ A +I+G+G++ Sbjct: 411 MPKNCPECETDLVRPEGE------AVWRCPNPI-CPAKTWRSIQHFASKAALDIDGMGEK 463 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + A I+ AD++ L++ Q I + F D+S L D+I +++ Sbjct: 464 NVAALLD----AGLIKDAADLYVLKKEQ------ILELERFADISAGKLIDAIAAKKHPP 513 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L +F+F+LGIRHVGA+ A + ++ S Q + L V VG+++A Sbjct: 514 LAKFLFALGIRHVGAQTAIDVTAHFGSLTAIRQATID----------QLHEVEGVGEVVA 563 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++IV ++++P + ++ K + + V TG+L + R +A + Sbjct: 564 ESIVAWFEDPEHQALLDKFEKYGVQPQDVKQAPTKGPLAGIHFVITGSLHSLDREEAADK 623 Query: 670 VTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LG + + + TD ++ GDN GSKL KA++ G KI++E++ ++++ Sbjct: 624 IRALGGIFQTAVGKNTDYLVAGDNVGGSKLAKAEKFGTKIIDEQKLRDMIRE 675 >gi|227889453|ref|ZP_04007258.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200] gi|227849931|gb|EEJ60017.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200] Length = 668 Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 222/722 (30%), Positives = 378/722 (52%), Gaps = 70/722 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ +A +++ L +++ D YY P++ D+ YD + + FPDL ++ Sbjct: 4 LTHSEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTADSI 63 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++GGE+ L KV H +P LS+ +++ ++L++F RI + + + + +E Sbjct: 64 T---QRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLV----GHPVAYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y GK A+ RG+G GEDV+A + I IP+ L P EVRGE Sbjct: 117 LKIDGLSLSLEYTNGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPE--PLTTEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G + +ANPRNAA+G LR+L+ IT R L+ F++ Sbjct: 175 YMEKEAFATLNAERDEKGEQVFANPRNAAAGSLRQLD-ARITKKRNLSTFIYTWVNPPRN 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + +M LGF N R+ + + + +E + R+ L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAIDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ +LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G +++ Sbjct: 293 SLQNELGNTVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A+LHN DY++ + +R+GD V + +AG++IP++ +++++R D++P+ Sbjct: 353 RASLHNPDYLR-----------EKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-- 487 P+ CP C +V + A RC + C AQ E + HF SR A NI GLG Sbjct: 402 IPNVCPSCGETLVHLQDE------VALRCINPM-CPAQIEEGIIHFASRGAMNIMGLGPR 454 Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 KQ +D F I AD++ L Q + + F + S+TNL SI Sbjct: 455 IVKQLIDKGF--------INDVADLYHLTPDQ------LGQLDHFKEKSITNLLSSIENS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + S E ++ LGI HVGA+ AR + + Y + + +Q L + +G Sbjct: 501 KQNSAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLT----------VPELTSIDTIG 550 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE-IENKKLVFTGTL 658 + IA+++ ++ P + + LL+E+ S +G E+ + K +V TG L Sbjct: 551 ETIAESLTAYFNQP----SAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTVVLTGKL 606 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + LGA V+ +S+KTD +I G + GSK +KA++L V ++ E++ + + Sbjct: 607 SAFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQEAIAKI 666 Query: 719 QQ 720 ++ Sbjct: 667 EK 668 >gi|19705038|ref|NP_602533.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|81485410|sp|Q8RI94|DNLJ_FUSNN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|19712952|gb|AAL93832.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 696 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 230/710 (32%), Positives = 384/710 (54%), Gaps = 58/710 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++++ + D YY +K +I D E+D L + +++ +P + ++ + P +G + Sbjct: 34 LREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYP---QYKEISSPTTSVGASLK 90 Query: 84 LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + FK V H P LSL +NI ++ +FI RI + K+ + + + LE K+DG I++ Sbjct: 91 ENKFKKVEHLHPMLSLANSYNIGEIVEFIERIKKKIPKEQE--LKYCLEVKLDGLSISLT 148 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV + F LN Sbjct: 149 YRQGKLVRAVTRGDGFIGEDVTENILEIASIVKTLPQAID--MEIRGEVVLPLASFEKLN 206 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 +E + G + +ANPRNAASG LR+L+ + R L+ + + L + ++ K E ++ + Sbjct: 207 NERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGLKSHSESIKFL 266 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 +G T I N + R +LPY+ DGLV KVDE +L ++G +++ Sbjct: 267 ESMGIKTTGIFELLETSKDIEKRINYWEKERESLPYETDGLVIKVDEINLWDEIGYTSKT 326 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++KF Q ST L D+ Q+GRTG LTPVA L+ V + G+ + A+LHN I+ Sbjct: 327 PRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNISEIQ- 385 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GDRV +++A E+IP+VV I ER + + P+ CPIC ++ Sbjct: 386 ----------RKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPTCCPICNHKL 435 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R+ + +C C A+ +++FVSRDA NI GLG + ++ F D Sbjct: 436 EREEG------LVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFI---DLG 485 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + I+ DIF L+ ++ +ENI G S+ NL +SI + +N ++ +++LGI Sbjct: 486 Y-IKTVVDIFDLKNHREA----LENIDKMGKKSIENLLNSIEESKNRDYDKILYALGIAE 540 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G ++ LAK ++ I+ ++A +D L + +G+I A I+ F+ +N Sbjct: 541 IGKVTSKILAKA-------SKNIDKLMAMTFED---LTSIEGIGEIAANEIIAFFTKEKN 590 Query: 622 ICAVEAL--------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ++ L +KE S+ +NV+ K +FTGTL+ R + +E + +L Sbjct: 591 QKIIQGLKEKGLKFEIKESEASV----QNVNPNFVGKNFLFTGTLKHFTREQIKEEIEKL 646 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 G + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 647 GGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|300813135|ref|ZP_07093512.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495889|gb|EFK31034.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 671 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 223/718 (31%), Positives = 386/718 (53%), Gaps = 55/718 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S+E+A++E+ L ++ YY+ P++ D YD R + A+P+L ++ Sbjct: 2 AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDKKYARLLELEAAYPELKSADS 61 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 ++GGE+N L KV H +P LS+ +++ E+L +F R+ QK + + + + Sbjct: 62 IT---QRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRV----QKAIGHPVAYNV 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YE+G+ A+ RG+G GEDV+ ++ I +P+ L I EVRGE Sbjct: 115 ELKIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTSE 248 Y+SK F LN E G +ANPRNAA+G LR+L+P R L+ F++ + + Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAG 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 I Q++ + +M LGF N R+ + Y +E R +LPY IDG+V KVD+ Sbjct: 233 I--DSQHQAIGEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDD 290 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G + Sbjct: 291 LALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVQLAGTTV 350 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN D + L DIR+GD V + +AG++IP++ ++++++R D+ P+ Sbjct: 351 ARASLHNPDLLAKL-----------DIRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPY 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V L+ + A RC +C AQ E + HF SR A NI GLG Sbjct: 400 EVPTKCPSCGEDLVH-LDKEV-----ALRCINP-SCPAQVEEGITHFASRQAMNIAGLGP 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + ++D ++ AD++ L + + + F + S+ NL +I++ R Sbjct: 453 KIVKQLI-AKDLVHNV---ADLYYL------TADDLSQLDHFKEKSINNLLAAIDQSRKN 502 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI +VG + A+ +A+ ++N ++ IA + L+ I +G I Sbjct: 503 SVELVLFGLGIDNVGGKAAQLIAR---KFKNMSK-----IASASVQELTAIDT--IGMTI 552 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++Q + A L+E + +G + + + K +V TG L R + Sbjct: 553 AESLTAYFQQ-EEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAE 611 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + + LGA V+ +S+KTD ++ G++ GSKL KA+ L + + E + + +++ +T Sbjct: 612 FTKKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669 >gi|313896259|ref|ZP_07829812.1| DNA ligase (NAD+) [Selenomonas sp. oral taxon 137 str. F0430] gi|312975058|gb|EFR40520.1| DNA ligase (NAD+) [Selenomonas sp. oral taxon 137 str. F0430] Length = 672 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 224/711 (31%), Positives = 359/711 (50%), Gaps = 46/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I+ + EL+ L ++I + YY + I D E+D L R AI +P+L N Sbjct: 4 IQMVKAELAELRRQIRRYSKQYYDDNASDISDYEFDQLMLRLKAIEAEYPELITK---NS 60 Query: 74 PLNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P K+GG + V H +P LSL+ +++ ++R F+ I + + F +E Sbjct: 61 PTQKVGGSAQRTAGVLVKHDVPMLSLQDVFSEAEIRDFVAGIRAHFPAAE-----FVVEE 115 Query: 133 KIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + +RYE G A RGDG GEDV+ R I + LS + P EVRGEV Sbjct: 116 KIDGLSLALRYENGVLARAVTRGDGIVQGEDVTENARMIADVREQLS-DAPVYFEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+ + F A+N+ +G KP+ANPRN A+G LR+L+ R L+ FV L +T Sbjct: 175 YMERAAFAAVNERQELLGLKPFANPRNCAAGTLRQLDARVTRERRLSMFVFNLQRTEGRT 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 MR G + G R T + + E+ + R +LPYDIDG V KV++FS Sbjct: 235 FASHTASYDFMRAQGIKIIAGYRVCRTADEVWAAIEEIGARRGSLPYDIDGAVVKVNDFS 294 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 + +LG A++PRW I++K+ ++ T L +I++ +GRTG +TP A +PV + G + Sbjct: 295 QRAELGATAKAPRWAIAYKYPPEEKETVLREIELSVGRTGRITPTAVFDPVQLCGTRVER 354 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+DYI GL D+R+GD +LV ++GE+IP+V +++ +R P+ Sbjct: 355 ATLHNQDYIAGL-----------DVRIGDTILVYKSGEIIPRVKAVVLEKRPASTVPYVI 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 CP+C VR+ + A +C + C AQ + HFVSR A +I+G G Sbjct: 404 GDTCPVCGEPAVREAD------TADMKCQNPV-CPAQVENHILHFVSRTAMDIKGFGTSA 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTL-QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + A + ADI+TL Q R + ++ I+G + +V L D++ + + Sbjct: 457 VIALTH----AGYLHDIADIYTLHQHRDELISS---GIIGR-EKTVDKLLDAVAHSKENT 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +R + LGI +G A SL + + S A+ D ++ VP +G++ A Sbjct: 509 PDRLLTGLGIAGIGRAAAISLMQEFPSVDALAEAARG-------DAEKILAVPDMGEVSA 561 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +++ EF+ + +E + + + +E K V TGTL + R + Sbjct: 562 RSLAEFFDSEAGRGLLEKFRAAGVNFVSAPRERTGTALEGKSFVITGTLPTLSREECAAL 621 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T G V +S+KTD ++ G+ GSKL KA+ LGV +++E ++++ Sbjct: 622 ITAHGGTVKGSVSKKTDYLVAGEAAGSKLAKAEFLGVPVLDEAALRRMIEE 672 >gi|296119554|ref|ZP_06838112.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306] gi|295967437|gb|EFG80704.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306] Length = 700 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 226/721 (31%), Positives = 371/721 (51%), Gaps = 64/721 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ E+A+K + L QE+ H + YY +P I D+++DAL + A+ A P L P Sbjct: 10 LNPEEAQKRWAELAQEVRRHRELYYN-EQPAIPDADFDALFQELVALESAHPQLVV---P 65 Query: 72 NGPLNKIGGE--MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++G + + + H +SL+ ++N ++L+ ++ R + + Sbjct: 66 DSPTQEVGSAPAADSAFADIEHLERLMSLDNVFNADELQDWLDRT---------PAEAYL 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEII 185 E KIDG I + Y GK AA RGDG GED++A R I +IP L + +P ++ Sbjct: 117 AELKIDGASIDLVYRDGKLATAATRGDGRVGEDITANARVIESIPHELQGSEEYPVPALV 176 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244 E+RGE+Y+ DF ALN+E + G++ +ANPRN+A+G LR NP D+ R L HGLG Sbjct: 177 EIRGEIYMRPEDFEALNEERASEGKQAFANPRNSAAGGLRMKNPDDVKKRRLRLVAHGLG 236 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 Q++ + G PV+ + T + R +++DG+V Sbjct: 237 AREGFTPTSQHDAYAAIAAWGLPVSPYTERVTTSKEVQDKVKYWADHRHDAEFEMDGVVI 296 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD+ Q+ LG +R+PRW I++K+ ++ +T+L +I++ +GRTG +TP A ++PV + Sbjct: 297 KVDDLGSQRSLGATSRAPRWAIAYKYPPEEVTTKLRNIEVGVGRTGRVTPYAVMDPVFVS 356 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ ++ ATLHN+ +K R G + +GD V++++AGE+IP+V+ + +R Sbjct: 357 GSTVSMATLHNQSEVK---------RKG--VLIGDTVIIRKAGEIIPEVLGPVEEKRDGT 405 Query: 425 AQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + FP CP C ++ L P K G A RC C AQ RL++ R AF+I Sbjct: 406 ETEWVFPENCPSCGTK----LAPQKEGD--ADWRCPNTRTCPAQLSARLEYLAGRGAFDI 459 Query: 484 EGLG-KQQLDFFFKSEDPAFSIRIPADIFTLQ----RRQQTSTTKIENILGFGDVSVTNL 538 E LG K +D + + +D+F L ++ + TTK N+ G ++NL Sbjct: 460 EALGEKGAIDLIERG-----VLEDESDLFDLTEELLKKSEVYTTKAGNVNASGKKLLSNL 514 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + R+ L R + +L IRHVG AR++A Y ++ A + D + Sbjct: 515 ETA----RHTDLWRVLVALSIRHVGPTAARAIASRY----------GSLDAARSADVEDI 560 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGT 657 VG +IA++ ++++ + V+ V+ +I +K + +E +V TGT Sbjct: 561 AETDGVGLVIAESFKDWFEIDWHRTIVDKWAAAGVTMAIDASDKPEQT-LEGLTIVVTGT 619 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L+ R A+E + G S +S+KTD ++ G+N GSK KA+ LGV I+NE F L Sbjct: 620 LENFSRDSAKEAIISRGGKASGSVSKKTDFVVAGENAGSKETKARDLGVTILNENGFETL 679 Query: 718 L 718 L Sbjct: 680 L 680 >gi|188995252|ref|YP_001929504.1| DNA ligase [Porphyromonas gingivalis ATCC 33277] gi|254781390|sp|B2RKL2|DNLJ_PORG3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188594932|dbj|BAG33907.1| DNA ligase [Porphyromonas gingivalis ATCC 33277] Length = 669 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 228/714 (31%), Positives = 370/714 (51%), Gaps = 56/714 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A+ IE+ R+ L H+ YY S P I D EYDA+ ++ + + +P+ + Sbjct: 8 AVRIEELRRILRE-------HEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEW---DS 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P +++G + V H P LSL +N +++ F R+ Q Sbjct: 58 PDSPTHRVGSDKTEGFASVRHDRPMLSLSNTYNYDEIGDFYRRVSEGLQGA---PFEIVA 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189 E K DG I++ YE G V A RGDG G+DV+A +R I ++P R+ + P ++EVRG Sbjct: 115 ELKFDGLSISLIYEDGMLVRAVTRGDGIMGDDVTANVRTIRSVPLRLRGDDYPRMLEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E+ + +F +N + A G +ANPRNAASG +++L+P + R L+ + + L + E Sbjct: 175 EILLPFKEFDRINAQREAEGEPLFANPRNAASGTIKQLDPHIVAGRNLDAYFYYL-YSDE 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A+ Y+ L + R GF V++ V + + ++ + + R TLP DG+V KV+ Sbjct: 234 PLAENHYDRLMQARQWGFKVSDAVTLCCSKEDVYAFIDRFDTERLTLPVATDGIVLKVNA 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q LG A+SPRW I++K+ ++ TRL + Q+GRTG +TPVA L+PV I G ++ Sbjct: 294 PAQQDLLGFTAKSPRWAIAYKYQAERVRTRLQHVSYQVGRTGAVTPVANLDPVLISGTVV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN D+I +D+ GD V V++ GE+IPK+V + + R D +P Sbjct: 354 RRASLHNADFI-----------AEKDLHEGDFVYVEKGGEIIPKIVGVDTDARSIDGRPI 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 F CP C + +VR+ AA+ C C QQ RL+H+ R A +I +G Sbjct: 403 VFTVLCPDCATPLVREQGE------AAYYCPNAEGCPQQQKGRLEHYCGRKAADI-NIGP 455 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + IR AD + L Q + + GF + L DSI + Sbjct: 456 ETIELLYSRN----MIRNVADFYALTEEQ------LLTLPGFKKRAAAKLLDSIEASKAR 505 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + +F LGIR VG +A+ LA Y S I+ + A +++ L+++ +G+ I Sbjct: 506 PYQAILFGLGIRFVGETVAKKLAAVYPS-------IDALAAATSEE---LVQIDEIGERI 555 Query: 609 AQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A A++ F+ +N +E L L VS VS+ + K +V +GT +K R + + Sbjct: 556 AAAVLHFFSLRQNRELIERLRLAGVSLEAETVSVPVSARLAGKTVVISGTFEKYSRDEYK 615 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 V G ++ +S KT I+ G + G SK EKA++LGV++M+EE+FL L+++ Sbjct: 616 AMVEDNGGRMAGSVSSKTSFILAGSDMGPSKREKAEKLGVRLMSEEEFLRLIEE 669 >gi|313203539|ref|YP_004042196.1| DNA ligase, nad-dependent [Paludibacter propionicigenes WB4] gi|312442855|gb|ADQ79211.1| DNA ligase, NAD-dependent [Paludibacter propionicigenes WB4] Length = 676 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 233/710 (32%), Positives = 366/710 (51%), Gaps = 59/710 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + ++ SL +E+ H+ YY S P I D E+DA R+ + A P+ DPN P + Sbjct: 3 KDQIESLRRELEQHNYNYYVKSAPTISDFEFDAKLRQLQELEAAHPEFF---DPNSPTQR 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136 +G ++ +V H P LSL ++ +++ F R+ +K N F E K DG Sbjct: 60 VGSDIASGFEQVAHVYPMLSLGNTYSEGEVQDFYERV-----RKGLNEDFELVCELKYDG 114 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 T I++ YE G V A RGDG G+DV+A ++ I +IP L N P+ E+RGE+ + + Sbjct: 115 TSISLTYEDGVLVRAVTRGDGEKGDDVTANVKTIRSIPLRLQGNYPKSFEIRGEILMPWS 174 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN---FFVHGLGKTSEIFAK 252 F LN E + +ANPRNAASG L+ N + + +R L+ +++ G S++ + Sbjct: 175 VFDDLNREREEQEEQLFANPRNAASGTLKLQNSSVVASRKLDAYLYYLLGENLPSDLHS- 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E L+ GF +++ + T + ++ N R LP DG+V KV+ S Q Sbjct: 234 ---ENLEAAHSWGFKISDATKVCRTLDEVSAFINYWDVERKNLPVATDGIVLKVNSLSQQ 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA L+PV + G + A+ Sbjct: 291 RALGFTAKSPRWAIAYKFQAEKAVTRLNSVSYQVGRTGAVTPVANLDPVQLSGTTVKRAS 350 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L D+ +GD V V++ GE+IPK+ + + R F Sbjct: 351 LHNADIIEAL-----------DLHIGDMVFVEKGGEIIPKITAVDKDARLLIGDKVQFIK 399 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + +VR AAH C AC Q +++HFVSR A NI+GLG + ++ Sbjct: 400 SCPECGAALVRFEGE------AAHYCPNENACPPQIKGKMEHFVSRKAMNIDGLGSETIN 453 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +++ D +I ADI+TL + ++E + G S N+ + K + I ER Sbjct: 454 LLYQN-DLLHNI---ADIYTL---KVPDLIRLERL---GTKSAYNIKEGAEKSKEIPFER 503 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F+LGIR VG IA+ LA + NI A + L+ V +G IAQ++ Sbjct: 504 VVFALGIRFVGETIAKKLAYAF----------KNIEALEQASYDELVAVDEIGGRIAQSV 553 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEY 669 V ++ + NI + LKE + E + + + +V +GT K R + + Sbjct: 554 VAYFSDSLNIEMLNR-LKEYGLQMSLSEDKLQAHGTALAGLSIVISGTFSKHSRDEYKTM 612 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + + G +S KT I+ GDN G KL+KA++LGVK++NE+ FL ++ Sbjct: 613 IERNGGKNVGSVSAKTSFILAGDNMGPEKLKKAEKLGVKLVNEDDFLSMI 662 >gi|312863154|ref|ZP_07723392.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396] gi|322516268|ref|ZP_08069198.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC 49124] gi|311100690|gb|EFQ58895.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396] gi|322125241|gb|EFX96614.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC 49124] Length = 652 Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 225/706 (31%), Positives = 371/706 (52%), Gaps = 63/706 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L +++ + YY P + D++YD L R + P+L +++ P +++ Sbjct: 3 KRMKELVSKLNQYAKEYYTEDNPSVSDADYDKLYRELVDLEVEHPELVQADSPT---HRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ + D + E KIDG Sbjct: 60 GGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRVKDEFPNAD-----YMAELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ Y G A RGDG GE+++ ++ I IP L L+ P I VRGE Y+ + +F Sbjct: 115 ISLTYVDGVLQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 +N + G +ANPRNAA+G LR+L+ + R L F++ +E Q ++ Sbjct: 173 ERINIQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFLYQEASPTERLT--QNDV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN ++ I + + R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDDLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ LL +D Q+GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+ ++ ++R +P P+ CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQ-EPMEVPTQCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S ++ + A RC +C AQ E L HF SRDA NI G+G ++ FK+ Sbjct: 399 GSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNIAGMGPSVVEKLFKA 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 E ++ ADI+ L ++ + GF + S LY +I + S E+ ++ L Sbjct: 452 E----LVKDVADIYGL------NSQDFLQLEGFKEKSAEKLYSAIQVSKENSAEKLLYGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRHVGA++++ L + + S Q A + D ++ V +GD+IA++I ++ Sbjct: 502 GIRHVGAKVSKQLLEAFGSIQELA----------SADVEAIAAVDGLGDVIAKSIQRYFA 551 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHKAQEYVT 671 + L+KE+ S G + + ++ + K +V TG L+ ++R +A+ + Sbjct: 552 KEE----AQVLMKELE-SYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAKLE 606 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LGA V+ +S+KTD+++ G + GSKLEKAQ LG+++ +E L L Sbjct: 607 ALGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652 >gi|295836378|ref|ZP_06823311.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB74] gi|295825992|gb|EDY45591.2| DNA ligase, NAD-dependent [Streptomyces sp. SPB74] Length = 818 Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 234/744 (31%), Positives = 375/744 (50%), Gaps = 76/744 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+E S + +E+ H YY +P++ D+++DAL RR A+ P L P+ P Sbjct: 51 EVREEHSRVAREVDEHRYRYYVNDQPVVSDADFDALLRRLTALEEEHPQL---RTPDSPT 107 Query: 76 NKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 K+ G+ V H LSL+ +++ E L + R+ + + + E K Sbjct: 108 QKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAK---EVGAPGYHYLCELK 164 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG + + YE G+ AA RGDG GED++ +R I IP L+ +PE++EVRGEVY Sbjct: 165 VDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGERVPELVEVRGEVY 224 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 DF ALN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G E F Sbjct: 225 FPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIG-AREGFT 283 Query: 252 ----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 YE+L + G P + A++ G+ S+ R ++ ++IDG+V K+D Sbjct: 284 IDRLSHAYELLHEW---GLPTAKHNKVADSLDGVRSFIRYYGEHRHSVEHEIDGVVVKLD 340 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E LQ +LG +R+PRW + KF ++ +T+L+DI + +GRTG +TP A +EP+ + G+ Sbjct: 341 EIPLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPIVVAGSE 400 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHN+D +K + + +GD V++++AG+VIP+++ + + R + Sbjct: 401 VEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSERA 449 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P+ CP C + +R + K G + RC +C AQ ER+ + R + +IE LG Sbjct: 450 FVMPAECPECGT-PLRAM--KEGDI--DLRCPNARSCPAQLRERIFYLAGRKSLDIEHLG 504 Query: 488 KQQLDFFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTKI-- 524 + +P+ +R D+F L +R T KI Sbjct: 505 YVAATALTQPLEPSEPPLRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPVTGEEKIVT 564 Query: 525 --ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 N G + ++ ++I + L + + L IRHVG A +LA+ + S Sbjct: 565 FFANKEGVAKKNALSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRS------ 618 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 I+ I A ++ L VG IA ++ ++Y N E L K + + R E + Sbjct: 619 -IDRIFAAEENE---LAETEGVGPTIAASLKQWYDAEENDWHREILRKWKAAGV-RMEAD 673 Query: 643 VSSE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 S +E +V TGTL++ R A+E + GA V+ +S+KT ++VGDNPGS Sbjct: 674 ESETDSGPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFVVVGDNPGS 733 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQ 720 K +KA L V ++ E+ F LL Q Sbjct: 734 KYDKALSLKVPVLEEDGFAILLDQ 757 >gi|325288193|ref|YP_004263983.1| DNA ligase [Cellulophaga lytica DSM 7489] gi|324323647|gb|ADY31112.1| DNA ligase [Cellulophaga lytica DSM 7489] Length = 664 Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 221/702 (31%), Positives = 359/702 (51%), Gaps = 49/702 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ +L +E+ H+ YY P I D ++D + A+ P+ D N P + Sbjct: 4 KEQIEALREELRKHNHNYYVLDTPTISDYDFDIKLKELQALEAKHPEFY---DANSPTLR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GGE+ + V H SL+ ++ EDL + R+ + D++I FT E K DG Sbjct: 61 VGGEITKNFNTVVHEHRMYSLDNSYSKEDLLDWEKRVEKIL---GDSNIEFTCELKYDGA 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE+GK V A RGDG G+DV+ I+ I ++P L + P ++RGE+ + Sbjct: 118 SISLTYEEGKLVRAVTRGDGFQGDDVTTNIKTIKSVPLQLKGDYPAKFDIRGEIVLPFEG 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E IA G PY NPRN ASG L+ + + + R L ++ + + + + Q+E Sbjct: 178 FYKMNEERIANGEDPYMNPRNTASGSLKLQDSSLVAQRPLECLLYSV-VGANLNLETQFE 236 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K R GF V + + ++++ R LPY+ DG+V KV+ Q++LG Sbjct: 237 ALEKTRSWGFKVPTVAKLCKSVDEVMAFVEYWDVHRHELPYETDGVVVKVNTLRYQEELG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW +++KF +Q ST L +I Q+GRTG +TPVA L PV + G + A+LHN Sbjct: 297 YTSKSPRWAMAYKFKAEQVSTVLNEISYQVGRTGAITPVANLAPVLLAGTTVKRASLHNA 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L D+RVGD V V++ GE+IPK+V + ++ R +++P + CP Sbjct: 357 DQIEKL-----------DVRVGDAVFVEKGGEIIPKIVGVNLDLRPQNSEPTKYIDHCPE 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + ++R A H C C Q +++HF+SR A +I+GLG + ++ FK Sbjct: 406 CNTELIRTEGD------AKHYCPNEYGCPPQITGKIQHFISRKAMDIDGLGSETVELLFK 459 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ AD++ L Q ++ S NL + I ER +F+ Sbjct: 460 EG----LIQNYADLYALTVDQLLPLERM------AKKSAENLVKGVAASVEIPFERVLFA 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG +A+ LAK Y NI A L L V +G+ IA ++V F+ Sbjct: 510 LGIRFVGETVAKKLAKAY----------KNIDALMYASALELATVDEIGERIASSVVAFF 559 Query: 617 QNPRNICAVEALLKEVSPSIGRHEK--NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 QN N+ + L EK N + +++ + V +G + + R+ ++ + G Sbjct: 560 QNEINLDIINRLKGYGLQFQVSAEKLLNQTEKLKGETYVVSGVFE-MSRNDLKKLIEDNG 618 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715 V + +S KT ++ GD G SK KA+ L V I++E++FL Sbjct: 619 GKVGSSISSKTTFLVAGDKMGPSKRTKAESLNVPIISEQEFL 660 >gi|307706499|ref|ZP_07643306.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321] gi|307617954|gb|EFN97114.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321] Length = 652 Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 222/685 (32%), Positives = 367/685 (53%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+PD ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V A R Sbjct: 76 LYSLQDAFSREELEAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGESE 186 Query: 213 YANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + TR L F++ + S Q ++L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVATRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWNFIQEVGEERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + PS CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRLSE-EKLDIPSHCPSCDSHLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRD NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDTMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 L K E+ L G + S + LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RL---------KEEDFLLLEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +++ S +N AQ ++ +A + +G +IA+++ ++ + ++ Sbjct: 513 LLLQHFHSIENLAQADSDEVAS----------IESLGSVIAKSLQTYFATEGSEILLKE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKNKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++ G + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646 >gi|254303498|ref|ZP_04970856.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323690|gb|EDK88940.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 696 Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 230/706 (32%), Positives = 381/706 (53%), Gaps = 50/706 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +++ + D YY +K +I D E+D L + +++ +P + ++ + P +G + Sbjct: 34 LREDLDKYRDSYYNDNKSLISDYEFDILLKELESLEEKYP---QYKETSSPTTSVGASLK 90 Query: 84 LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + FK V H+ P LSL +NI ++ FI RI + K+ + + + LE K+DG I++ Sbjct: 91 ENKFKKVEHAHPMLSLANSYNIGEIVDFIERIKKKISKEQE--LKYCLEVKLDGLSISLT 148 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV + F LN Sbjct: 149 YRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAID--MEIRGEVVLPLASFEKLN 206 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 +E + G + +ANPRNAASG LR+L+ + R L+ + + L + ++ K E ++ + Sbjct: 207 NERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADKLGLKSHSESIKFL 266 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 +G T I + + R LPY+ DGLV KVDE +L ++G +++ Sbjct: 267 EAMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIGYTSKT 326 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++KF Q ST L D+ Q+GRTG LTPVA LE V + G+ + A+LHN I+ Sbjct: 327 PRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNISEIQ- 385 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GDRV +++A E+IP+VV I ER + + P+ CP+C ++ Sbjct: 386 ----------RKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEEPTHCPVCNHKL 435 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R+ + + +C C A+ +++FVSRDA NI GLG + ++ F D Sbjct: 436 ERE------EGLVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFI---DLG 485 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + I+ DIF L+ ++ +ENI G S+ NL +SI + +N ++ I+SLGI Sbjct: 486 Y-IKTVVDIFDLKEHKEA----LENIDKMGKRSIENLLNSIEESKNRDYDKVIYSLGIPF 540 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G ++ LAK ++ I+ ++ +D L + +G+I A I+ F+ +N Sbjct: 541 IGKVASKVLAKA-------SRNIDKLMTMTFED---LTSIEGIGEIAANEIIAFFNKEKN 590 Query: 622 ICAVEALL-KEVSPSIGRHE---KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 ++ L K + I E +NV+ K +FTGTL+ R + +E + +LG Sbjct: 591 QKIIQGLKEKGLKFEIKESEINVQNVNPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKN 650 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 651 LSSISKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|325911416|ref|ZP_08173828.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D] gi|325476766|gb|EGC79920.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D] Length = 672 Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 230/717 (32%), Positives = 381/717 (53%), Gaps = 69/717 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L DP Sbjct: 4 LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG L KV H P LS+ +++ ++L +F RI QK + + + +E Sbjct: 61 DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVRGE Sbjct: 117 LKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G +ANPRNAA+G LR+L+ ++T R L+ F++ E Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G +++ Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C +V K A RC + C AQ E + HF SR A NI GLG + Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454 Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 QL D AD++ L S T++ + F + S+ NL ++I + Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SATQLAKLDHFKEKSIQNLLNAIENSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+E +F LGI HVGA+ AR +AK + ++N I + D L+++ +G Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAKKF-------HDLNTIRECSIAD---LMQIDTIGQ 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658 IA+++V++++ +V+AL+ ++ + +G + + + K +V TG L Sbjct: 552 TIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVI 664 >gi|152990877|ref|YP_001356599.1| NAD-dependent DNA ligase LigA [Nitratiruptor sp. SB155-2] gi|166216219|sp|A6Q433|DNLJ_NITSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151422738|dbj|BAF70242.1| DNA ligase, NAD-dependent [Nitratiruptor sp. SB155-2] Length = 660 Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 228/692 (32%), Positives = 358/692 (51%), Gaps = 62/692 (8%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P + D YD L R + A PD DP P +IG E K+ H Sbjct: 21 AYYVLDNPEVPDEVYDKLYREVEEYEKAHPDQI---DPTSPTQRIGAEPAKEFKKIKHLS 77 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 S+E ++N ++ +++ R+Y+ +KD + F +EPK DG + + YE G AA Sbjct: 78 KMWSMEDVFNQREMHEWLERVYKNAGRKD---LQFYIEPKFDGASLNLIYENGLLKSAAT 134 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GEDV+A + IP+IP L ++ +IE+RGEV I K+DF LN E G + Sbjct: 135 RGDGEVGEDVTANAKTIPSIP--LGIDYKGLIEIRGEVVIRKDDFEKLNHERALKGESTF 192 Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF--PVNN 270 ANPRNAA+G LR+L+P R L F+ +G + F K Q+E + + GF P Sbjct: 193 ANPRNAAAGSLRQLDPKVTAQRKLYFYPWDIGYNTLNF-KYQHEKMDFVYQQGFIKPFKR 251 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 + I Y E R LP +DG+V KVDE +L + LG + PRWM+++KF Sbjct: 252 AI--CENEEEIQQLYEEFSKERDKLPVMLDGMVVKVDEIALHEILGYTVKYPRWMVAYKF 309 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 + TR++DI Q+GRTG++TPVA LEPV I G ++ ATLHN I+ Sbjct: 310 PAVEKMTRIIDIVPQVGRTGVITPVAILEPVEIEGVVVERATLHNYAEIE---------- 359 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 +DIR+GD V+V R+G+VIP+V ++ R + P CP+C V+ + G Sbjct: 360 -RKDIRIGDMVIVIRSGDVIPEVTKVLTQYRTGKEKKVERPKVCPVCGQPVLDE-----G 413 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 L+ +C L+C A+ + + +F S+ +I GLG+ + ++ ++ D+ Sbjct: 414 ILI---KCQ-NLSCPARVVNSIIYFASKQCLDISGLGEATVKLLYEK----GLVKDVVDL 465 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 F L++ + + GF + NL D+ + + RF+ +LGI H+G ++ L Sbjct: 466 FKLKKED------LLRLPGFAEKKAQNLIDATQSVKGVECWRFVNALGIEHIGEVASKKL 519 Query: 571 A-KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 K+ L + +E L + G + ++I EF + N +E L+ Sbjct: 520 CEKFGLDWYKAPKE-------------KLYEIEGFGPEMVRSIEEFVE--VNKEKIEKLI 564 Query: 630 KEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 + + P+ + E+ V +S + +K +V TG + K+ R K +E + + GA V+ +S TD + Sbjct: 565 ELLQPTEPKKEEEVENSPLAHKTVVLTGEM-KLPRSKIKELLERAGAHVTNSVSHHTDYV 623 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G+NPGSK +KAQQLGV ++ EE+ LL++ Sbjct: 624 FYGENPGSKFQKAQQLGVPLLPEEKMWELLKE 655 >gi|239928777|ref|ZP_04685730.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672] gi|291437098|ref|ZP_06576488.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672] gi|291339993|gb|EFE66949.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672] Length = 731 Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 228/740 (30%), Positives = 367/740 (49%), Gaps = 72/740 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR++ L ++I H YY P+I D+E+D R + + P+ P Sbjct: 15 EAREQHVQLAEQIEEHRFRYYVNDAPVISDAEFD---RLLRELEALEEEYPELRTPDSPT 71 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G V H LSL+ +N +DL + R+ R + + F E K+D Sbjct: 72 QKVAGSYETEFTAVRHRSRMLSLDNTFNDDDLAAWTERVRR---ELGEQEYHFLCELKVD 128 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE+G+ AA RGDG +GED++ +R I +P R+ +P+++E+RGEVY Sbjct: 129 GLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTIAEVPDRLKGDRVPDLVEIRGEVYFP 188 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 189 MEKFEELNRRLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHLVVHGIGALEGFEGMT 248 Query: 254 QY-EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + E ++ G P + R + G+ + R ++ ++IDG+V K+DE LQ Sbjct: 249 RLSEAYDLLKSWGLPTSRHNRVVDDLGGVREFIAHYGENRHSVEHEIDGVVVKLDEIRLQ 308 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ + AT Sbjct: 309 GRLGSTARAPRWAIAYKYAPEEVNTKLVDIRVGVGRTGRVTPYAQVEPVTVAGSEVEFAT 368 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+D +K + + +GD V++++AG+VIP+++ + + R + F P Sbjct: 369 LHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPG 417 Query: 433 FCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + L P K G + RC AC AQ ERL + R A +IE G Sbjct: 418 ECPECGT----PLRPMKEGDV--DLRCPNARACPAQLRERLFYLAGRKALDIEHFGYVAA 471 Query: 492 DFFFKSEDPA-FSIRIPADIFTL--------------------QRRQQTSTTKIENIL-- 528 K +PA ++ D+F L +R +T KI + Sbjct: 472 AALTKPLEPADPPLKDEGDLFDLTVDQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFAN 531 Query: 529 --GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 G + + ++I + L R + L IRHVG A +LA+ + S I+ Sbjct: 532 QEGKAKKNALAMLENIAAAKERPLARLLTGLSIRHVGPVAAEALARAFRS-------IDR 584 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 I + ++ L VG+I+A A+ +++ + ++++ + R E S E Sbjct: 585 IEEASEEE---LKNTEGVGEIVAAAVKQWFAEEWH----REIIRKWKAAGVRMEDEGSGE 637 Query: 647 ------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGSK +K Sbjct: 638 DEGPRPLEGLTVVVTGTLEHFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDK 697 Query: 701 AQQLGVKIMNEEQFLFLLQQ 720 A QL V ++NEE LL Q Sbjct: 698 AMQLKVPVLNEEGLNVLLGQ 717 >gi|309808880|ref|ZP_07702761.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a] gi|308167878|gb|EFO70015.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a] Length = 672 Score = 347 bits (889), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 230/717 (32%), Positives = 381/717 (53%), Gaps = 69/717 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L DP Sbjct: 4 LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG + L KV H P LS+ +++ ++L +F RI QK + + + +E Sbjct: 61 DSITQRVGGNIKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVRGE Sbjct: 117 LKIDGLSLSLEYKVGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G +ANPRNAA+G LR+L+ ++T R L+ F++ E Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G +++ Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C +V K A RC + C AQ E + HF SR A NI GLG + Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454 Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 QL D AD++ L S ++ + F D S+ NL ++I + Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+E +F LGI HVGA+ AR +AK + ++N I + D L+++ +G Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAKKF-------HDLNTIRECSIAD---LMQIDTIGQ 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658 IA+++V++++ +V+AL+ ++ + +G + + + K +V TG L Sbjct: 552 TIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVI 664 >gi|322392021|ref|ZP_08065484.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780] gi|321145119|gb|EFX40517.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780] Length = 652 Score = 347 bits (889), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 219/686 (31%), Positives = 365/686 (53%), Gaps = 67/686 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A P+ PN P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELEQAHPEQVL---PNSPTHRVGGKILDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ ++ + E KIDG I++ YE+G V A R Sbjct: 76 LYSLQDAFSREELLAFDARV-----RKELPNVTYICELKIDGLSISLTYEQGVLVVGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE ++ VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEALDMTVRGECYMPRASFDQVNQSRQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q ++L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRNSQEQVLKHLEQLGFVVNPR 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A++ + + E+ R LPYDIDG+V KV++ Q+QLG ++P+W +++KF Sbjct: 245 RVLAHSMDEVWQFIQEVGQERDQLPYDIDGVVIKVNDLVGQEQLGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------S 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C+S+++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRISE-EKLDIPTNCPSCESKLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNISGLGPSMVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L + G + + LY +I + S E+ +F LGIRHVG++ ++ L Sbjct: 462 RLTEHD------FLQLEGVKEKTAQKLYQAIQASKENSAEKLLFGLGIRHVGSKASKLLV 515 Query: 572 KYYLSYQNFAQ----EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +++ S + AQ E++NI +G +IA+++ ++ + + Sbjct: 516 QHFHSIETLAQADPEEVSNI--------------ETLGSVIAKSLQTYFATEGSKILLRE 561 Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 LKE+ S+ + V+ + + +V TG L+++ R +A+ + LGA V+ +S+KT Sbjct: 562 -LKELGVSLDYKGQVVAGDAALSGLTVVLTGKLERLNRSEAKSKLESLGAKVTGSVSKKT 620 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNE 711 D+++ G + GSKL+KAQ+LG++I +E Sbjct: 621 DLVVAGADAGSKLQKAQELGIEIRDE 646 >gi|312875390|ref|ZP_07735394.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b] gi|311089053|gb|EFQ47493.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b] Length = 672 Score = 347 bits (889), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 230/717 (32%), Positives = 381/717 (53%), Gaps = 69/717 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L DP Sbjct: 4 LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG + L KV H P LS+ +++ ++L +F RI QK + + + +E Sbjct: 61 DSITQRVGGNIKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVRGE Sbjct: 117 LKIDGLSLSLEYKVGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G +ANPRNAA+G LR+L+ ++T R L+ F++ E Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G +++ Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C +V K A RC + C AQ E + HF SR A NI GLG + Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454 Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 QL D AD++ L S ++ + F D S+ NL ++I + Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+E +F LGI HVGA+ AR +AK + ++N I + D L+++ +G Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAKKF-------HDLNTIRECSIAD---LMQIDTIGQ 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658 IA+++V++++ +V+AL+ ++ + +G + + + K +V TG L Sbjct: 552 TIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVV 664 >gi|322375289|ref|ZP_08049802.1| DNA ligase, NAD-dependent [Streptococcus sp. C300] gi|321279552|gb|EFX56592.1| DNA ligase, NAD-dependent [Streptococcus sp. C300] Length = 652 Score = 346 bits (888), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 224/685 (32%), Positives = 365/685 (53%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+PD ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V A R Sbjct: 76 LYSLQDAFSREELEAFDARV-----RKELPQPTYICELKIDGLSISLTYEKGVLVVGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q ++L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLEHLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A + I + E+ R LPYDIDG+V KV++ + Q++LG ++P+W I++KF Sbjct: 245 RILAKSIDEIWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAIAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR GD V+V +AG++IP V+ ++ ++R + + PS CP C S ++ + Sbjct: 354 EKDIRKGDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPSNCPSCDSHLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 L K E+ L G + S + LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RL---------KEEDFLLLEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +++ S +N AQ D + + +G +IAQ++ ++ + ++ Sbjct: 513 LLLQHFHSIENLAQA----------DPEEVASIESLGGVIAQSLQTYFATEGSKILLDE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L+++ R +A+ + LGA V+ +S+KT+ Sbjct: 562 LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKVTGSVSKKTN 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++ G + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646 >gi|228904740|ref|ZP_04068794.1| DNA ligase [Bacillus thuringiensis IBL 4222] gi|228854754|gb|EEM99358.1| DNA ligase [Bacillus thuringiensis IBL 4222] Length = 656 Score = 346 bits (888), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 227/699 (32%), Positives = 368/699 (52%), Gaps = 62/699 (8%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 E++ + YY KPI D+EYD L I P+ + P+ N++GGE+ Sbjct: 14 ELTMLNHHYYTMDKPIASDAEYDRLYDELVKIEELHPEWTVAHSPS---NRVGGEVLDKF 70 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 K H++P SLEK + +RKF+ + K++ + FT+E K+DG +RY G Sbjct: 71 EKKEHTMPLYSLEKSQTYDGVRKFVEDV-----KREFPNATFTIEQKMDGLANVLRYSGG 125 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 F RG G GE VS I+ I +IP L++ +IE RGEV++ + F A N + Sbjct: 126 SFSEGRTRGTGKIGEIVSEQIKTIRSIP--LNIRFQGVIEPRGEVFMPISGFEAYNASL- 182 Query: 207 AVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 G P NPRN A+G LR L+P +R L+ F + + + I + Q EM+ ++ G Sbjct: 183 PEGEAPLKNPRNGAAGALRNLDPRIAASRPLDAFWYDIAYSEGITFETQAEMMTFLQEQG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F +N ++ I+ EMK +R TL +DIDG+V KV+E ++++LG ++ P+W Sbjct: 243 FKINPYFYVTDSIDVIIEKLEEMKEVRPTLNWDIDGMVIKVNELHIREELGYTSKFPKWA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I++KF + +T L + ++GRTG LTP+A LEPV+IGG +T ATL+N D Sbjct: 303 IAYKFEAVEETTTLNSVTWEVGRTGKLTPLAHLEPVDIGGTTVTKATLNNYD-------- 354 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++R G ++VG V V+R+ +VIP+++ I+ + P P+ CP C++ +V+D Sbjct: 355 -DILRKG--VKVGAEVFVRRSNDVIPEIMGIVEGSEGTEIVP---PTHCPECETVLVQD- 407 Query: 446 NPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 AH RC +CSAQ + + HF SR+A NI+ ++ + F+ A I Sbjct: 408 --------GAHLRCMNIDSCSAQSVGKFTHFASREAMNIDSFSEKTAEQLFE----AGLI 455 Query: 505 RIP-ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 R D++ L R + + FG+ L +I + ++ +LE FI++LG+RH G Sbjct: 456 RNSFVDLYRLDRNELLKLDR------FGERKADRLLAAIEESKSRTLEAFIYALGMRHSG 509 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 A L +YY NNI N L+R+ +G +AQ+I +++ N RN+ Sbjct: 510 KGTAERLLRYY----------NNIDDIANASVEDLMRIEDIGSAVAQSIFDYFHNERNLQ 559 Query: 624 AVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 +E LK + ++ H VSS ++E V TG + + R + + ++ + G S + Sbjct: 560 MIEE-LKALGLTL-THVAAVSSGNQLEGNTFVITGKVSR-PRKEIEAFIKEHGGKASGSI 616 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S+ T+ ++ G+ GSKL KAQ LGV ++ EEQ ++ + Sbjct: 617 SKNTNYLVAGEAAGSKLAKAQSLGVTVITEEQLYKMVNE 655 >gi|55821530|ref|YP_139972.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMG 18311] gi|55823458|ref|YP_141899.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus CNRZ1066] gi|81559086|sp|Q5LYL9|DNLJ_STRT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81560280|sp|Q5M382|DNLJ_STRT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|55737515|gb|AAV61157.1| DNA ligase [Streptococcus thermophilus LMG 18311] gi|55739443|gb|AAV63084.1| DNA ligase [Streptococcus thermophilus CNRZ1066] Length = 652 Score = 346 bits (888), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 226/708 (31%), Positives = 371/708 (52%), Gaps = 67/708 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L +++ + YY P + D+EYD L R + P+L +++ P +++ Sbjct: 3 KRMKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPT---HRV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ + D + E KIDG Sbjct: 60 GGLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRVKSEFPNAD-----YMAELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ Y G A RGDG GE+++ ++ I IP L L+ P I VRGE Y+ + +F Sbjct: 115 ISLTYVDGILQVGATRGDGSVGENITENVKRISDIP--LKLDQPLNITVRGECYLPRAEF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYE 256 +N + G +ANPRNAA+G LR+L+ + R FF T + Q + Sbjct: 173 ERINTQRQENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEASPTERLT---QND 229 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L ++ LGF VN ++ I + + R L YDIDG+V KV+ ++Q++LG Sbjct: 230 VLNEVAELGFSVNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAIQEELG 289 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++PRW I++KF ++ +LL +D Q+GRTG++TP A L PV + G ++ ATLHN Sbjct: 290 FTVKAPRWAIAYKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNV 349 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFCP 435 DYI +DIR+GD V+V +AG++IP V+ ++ ++R +A P PS CP Sbjct: 350 DYIT-----------EKDIRIGDTVIVYKAGDIIPAVLRVVESKRTTQEAMP--VPSQCP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S ++ + A RC +C AQ E L HF SRDA NI G+G ++ F Sbjct: 397 SCGSGLLHFEDE------VALRCINP-SCPAQIKEGLIHFASRDAMNISGMGPSVVEKLF 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 K+E ++ ADI+ L ++ + GF + S LY +I + S E+ ++ Sbjct: 450 KAE----LVKEVADIYGL------NSQDFLQLEGFKEKSAEKLYAAIQASKENSAEKLLY 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIRHVGA++++ L + + + + A + D ++ V +G++IA++I + Sbjct: 500 GLGIRHVGAKVSKQLLESFGTIKELA----------SADVQAIAAVDGLGEVIAKSIQRY 549 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHKAQEY 669 + + LLKE+ S G + + ++ + K +V TG L+ ++R +A+ Sbjct: 550 FAKEE----AQVLLKELE-SYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAK 604 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 + LGA V+ +S+KTD+++ G + GSKLEKAQ LG+++ +E L L Sbjct: 605 LEALGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL 652 >gi|94988258|ref|YP_596359.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS9429] gi|94992132|ref|YP_600231.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS2096] gi|122986939|sp|Q1JCM1|DNLJ_STRPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123080420|sp|Q1JMJ7|DNLJ_STRPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94541766|gb|ABF31815.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS9429] gi|94545640|gb|ABF35687.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS2096] Length = 652 Score = 346 bits (888), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 222/699 (31%), Positives = 368/699 (52%), Gaps = 62/699 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL+ L Y YY P + DS+YD L R + ++P+ + P ++ Sbjct: 6 KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ K + + + E KIDG Sbjct: 60 GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G A RGDG+ GE+++ I+ I IP LS P I VRGE Y+S+ F Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 A+N+ G +ANPRNAA+G LR+L+ + + R L F++ + S Q E+ Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLYQ--EASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELAGLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ + P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFI 554 A + ADI+ L + EN + G + S L +I ++ S E+ + Sbjct: 450 --LAGFVHDVADIYQLTK---------ENFMQLDGIKEKSADKLLAAIEASKSNSAEKLL 498 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIRH+G++++R + + Y +I+ ++ ++ + R+ +G IAQ++ + Sbjct: 499 FGLGIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQ 548 Query: 615 FYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +++ V+ L V+ + N + + +V TG L ++ R++A++ + L Sbjct: 549 YFEQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEAL 608 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 GA V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ Sbjct: 609 GAKVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647 >gi|166154367|ref|YP_001654485.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 434/Bu] gi|166155242|ref|YP_001653497.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335620|ref|ZP_07223864.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis L2tet1] gi|254781287|sp|B0B9Q4|DNLJ_CHLT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781289|sp|B0BBD3|DNLJ_CHLTB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|165930355|emb|CAP03841.1| NAD-dependent DNA ligase [Chlamydia trachomatis 434/Bu] gi|165931230|emb|CAP06795.1| NAD-dependent DNA ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 663 Score = 346 bits (887), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 379/704 (53%), Gaps = 53/704 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL- 75 +R + +L E+ HD YY ++P I D YD R I P+ S P L Sbjct: 5 SRDDYIALCTELVEHDRRYYALNQPTISDYSYDMKMRELQEIEVQHPEWKVSWSPTMYLG 64 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ G+ + V HS P LS+ ++++++L +F +R +K S ++LE KID Sbjct: 65 DRPSGQFPV----VPHSSPMLSIANVYSLQELEEFFSRT----EKLLGYSPGYSLELKID 116 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + IRYEK F A RG+G GED++A + I ++P L PE +EVRGEV++S Sbjct: 117 GIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSY 176 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 F LN G+ +ANPRNAA G L+ L+ + R L+ V+GL ++ + Sbjct: 177 EAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGL--ITDQKKRSH 234 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ GF V +Q + +V E++ +R+ LP IDG+V KVD + Q + Sbjct: 235 FENLQLCSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDR 294 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++ RW I++K+A ++A T L DI +Q+G+TGILTPVA L PV + G+ ++ A+L+ Sbjct: 295 LGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLY 354 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N+D I+ +DIR+GD V V++ GEVIPK+V I + +R +++P+ PS C Sbjct: 355 NQDEIE-----------KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLC 403 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C VV++ + RC L CS LE++ F S+ A NI+ LG++ + Sbjct: 404 PVCHEPVVKE--------KVSVRCINPL-CSGGMLEKICFFASKSALNIDHLGEKVVTKL 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ I +DIF L + ++ + GF D S+ NL SI + ++L+R + Sbjct: 455 FE----VGLISSCSDIFAL------TEEDLKQVPGFKDRSIQNLLASIAGAKKVALDRLL 504 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 +L I VG+ A +LA ++ + ++ +I + D+ L+ + +G +A +IV Sbjct: 505 TALSIPFVGSSGAIALADHFGT-------LDKVIEASLDE---LMSIEGIGPKVAASIVA 554 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 F+ N + ++E+ + + + + ++ K V TGTLQ++ R +A+E + LG Sbjct: 555 FFSKHENREEIRR-MQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRSLG 613 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS+ +S+ T +I G G KL+KAQ LG+ I NE + +L Sbjct: 614 GKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESKLSRIL 657 >gi|322411466|gb|EFY02374.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 652 Score = 346 bits (887), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 222/681 (32%), Positives = 357/681 (52%), Gaps = 55/681 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + + +P+ + P +GG + K H P Sbjct: 19 YYTNDSPSVSDSEYDKLYRELVELENQYPEHVLQDSPT---QNVGGTLLTGFDKYQHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ K + + E KIDG I++ YE G+ A R Sbjct: 76 LFSLQDAFSREELDAFDKRV-----KSEFPDATYLAELKIDGLSISLSYENGQLQVGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+++ ++ I IP+VL P I VRGE Y+S+ F A+N+E G +A Sbjct: 131 GDGSIGENITENLKQIKDIPQVLPQ--PLTITVRGEAYMSRQSFKAINEERQENGETEFA 188 Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+ + R L F++ + S Q +L+ + LGF VN Sbjct: 189 NPRNAAAGTLRQLDTAVVAKRQLATFLYQ--EASPTTRSQQDHVLKALADLGFSVNQRYH 246 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 +++ I ++ +++ R L YDIDG+V KV+ ++Q++LG ++PRW I++KF + Sbjct: 247 LSSSMDEIWNFIQTVEAEREQLAYDIDGIVIKVNNLAMQEELGFTVKAPRWAIAYKFPAE 306 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 + +L +D +GRTG++TP A L V + G ++ ATLHN DYI + Sbjct: 307 EKEAEILSVDWTVGRTGVVTPTANLTSVQLAGTTVSRATLHNVDYI-----------AEK 355 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIR+GD V++ +AG++IP V+ +I ++R P PS CP CQS +V + Sbjct: 356 DIRIGDTVIIYKAGDIIPAVLRVISDKRQEQV-PMWIPSQCPSCQSDLVHFEDE------ 408 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RC L C + L+HF SR+A NI GLG ++ F A + ADI+ L Sbjct: 409 VALRCINPL-CPSLIQRGLEHFASRNAMNIAGLGPAVVEKLF----LAGLVHDVADIYKL 463 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + + ++ G + S L +I ++ S E+ +F LGIRH+GA+ +R + + Sbjct: 464 TKED------LLHLDGIKEKSAEKLLAAIETSKSNSAEKLLFGLGIRHIGAKASRLILET 517 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 I +++ +D + + +G +IA+++V+++Q I VE LK Sbjct: 518 -------CGNIEHLLTVREED---IATIDGLGMVIAKSLVQYFQQDSAILLVEE-LKNAG 566 Query: 634 PSIGRHEKNVSSEIE--NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ + + S E +V TG L+K+ R+ A+ + LGA V+ +S+KT+++I G Sbjct: 567 VNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRNDAKAKLETLGAKVTGSVSKKTNLVIAG 626 Query: 692 DNPGSKLEKAQQLGVKIMNEE 712 + GSKLEKAQ LG++I EE Sbjct: 627 SDAGSKLEKAQALGIRIEGEE 647 >gi|322387936|ref|ZP_08061543.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779] gi|321141209|gb|EFX36707.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779] Length = 652 Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 220/683 (32%), Positives = 367/683 (53%), Gaps = 61/683 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ P+ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELEIAYPEQVL---PDSPTHRVGGKILDGFKKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + + + E KIDG I++ YE+G F A R Sbjct: 76 LYSLQDAFSREELDAFDARV-----RKELDDVTYICELKIDGLSISLTYEQGIFAAGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+++ ++ + IP LS I I VRGE Y+ ++ F +N G +A Sbjct: 131 GDGSVGENITENLKRVKDIPLSLSEKID--ITVRGECYMPRDSFNQVNLARQENGEPEFA 188 Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+ + R L F++ + S Q ++L + LGF VN Sbjct: 189 NPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLNHLEQLGFVVNPRRL 246 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 A++ + + E+ R LPYDIDG+V KV++ + Q+QLG ++P+W +++KF + Sbjct: 247 LAHSMDEVWEFIQEVGQERDQLPYDIDGVVIKVNDLTGQEQLGFTVKAPKWAVAYKFPAE 306 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 + +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI + Sbjct: 307 EKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEK 355 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C+S+++ + Sbjct: 356 DIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLGIPTNCPSCESKLLHFEDE------ 408 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RC C AQ E L HF SRDA NI GLG ++ F A ++ ADI+ L Sbjct: 409 VALRCINP-QCPAQIKEGLIHFASRDAMNISGLGPSIVEKLF----AANLVKDVADIYRL 463 Query: 514 QRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 +E+ L G + S LY +I + S E+ +F LGIRHVG++ ++ L Sbjct: 464 ---------TVEDFLVLDGIKEKSAQKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLL 514 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 +++ S ++ AQ +A + +G++IAQ++ +++ + + LK Sbjct: 515 LQHFHSIESLAQANPEEVAS----------IESLGNVIAQSLQSYFET-EGAKILLSELK 563 Query: 631 EVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 E+ ++ + V+ + + +V TG L+++ R +A+ + LGA V+ +S+KTD++ Sbjct: 564 ELGVNLDYKGQVVAVDAALSGLTVVLTGKLERLTRSEAKSKLENLGAKVTGSVSKKTDLV 623 Query: 689 IVGDNPGSKLEKAQQLGVKIMNE 711 + G GSKL+KAQ+LG++I +E Sbjct: 624 VAGAEAGSKLQKAQELGIEIRDE 646 >gi|297191909|ref|ZP_06909307.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486] gi|197721112|gb|EDY65020.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486] Length = 736 Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 235/741 (31%), Positives = 367/741 (49%), Gaps = 75/741 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QAR+E + L ++I H YY P+I D+E+D L R + + +P+L P+ P Sbjct: 21 QAREEHALLAEQIEEHRFRYYVKDSPVISDAEFDKLLRELEGLEERYPEL---RTPDSPT 77 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G+ L KV H LSL+ ++ +L + R+ R F E K+D Sbjct: 78 QKVAGDYETELTKVEHRERMLSLDNAFDDAELAAWAERVAR---DVGAPGYHFLCELKVD 134 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YEKG+ AA RGDG GED++ R I IP R+ IP ++E+RGEVY Sbjct: 135 GLAVNLTYEKGRLTRAATRGDGRVGEDITPNARTIAGIPDRLGGDRIPRLVEIRGEVYFP 194 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 F LN +A G +PYANPRN+ASG LR+ +P T L VHG+G + Sbjct: 195 MEQFQELNARRVAAGEQPYANPRNSASGSLRQKDPKVTATLPLRMVVHGIGAREGLTIDR 254 Query: 254 QYEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + +R G P N V ++Y+ E R ++ ++IDG+V K+DE Sbjct: 255 LSQAYDLLREWGLPTARHNKVVGSLEEVREFIAYFGEH---RHSVEHEIDGVVVKLDEIP 311 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG AR+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + Sbjct: 312 LQGRLGSTARAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 371 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+D +K + + +GD V++++AG+VIP+++ +V+ R + F Sbjct: 372 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVM 420 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + +R + L RC +C AQ ERL + R A +IE G Sbjct: 421 PAECPECGT-ALRPMKEGDVDL----RCPNARSCPAQLRERLFYLAGRKALDIEHFGYVA 475 Query: 491 LDFFFKSEDPAFSIRI-PADIFTL--------------------QRRQQTSTTKIENIL- 528 + +PA + D+F L +R +T KI + Sbjct: 476 AAALTQPLEPAEPPLVDEGDLFDLTMEQLLPIKAYVLDQDSGLPKRDPKTGEDKIATVFA 535 Query: 529 ---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 G + + ++I + L R I L IRHVG A +LA+ + S Q Sbjct: 536 NQKGEPRRNAVAMLENIAAAKERPLARIITGLSIRHVGPVAAEALAREFRSIDRIEQATE 595 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 L V VG IA A+ ++++ + +L++ + R E++ S Sbjct: 596 E----------ELAAVDGVGPTIAAALKQWFEEDWH----REILRKWRAAGVRTEEHGSG 641 Query: 646 E------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 E +E +V TGTL+ R A+E + LGA V+ +S+KT ++VGDNPGSK + Sbjct: 642 EDAGPRPLEGLTVVVTGTLENHTRDGAKEALQSLGAKVAGSVSKKTSFVVVGDNPGSKYD 701 Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720 KA QL V +++E F LL++ Sbjct: 702 KAVQLKVPVLDESGFAVLLEE 722 >gi|225870290|ref|YP_002746237.1| DNA ligase [Streptococcus equi subsp. equi 4047] gi|254781420|sp|C0M6L2|DNLJ_STRE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225699694|emb|CAW93413.1| DNA ligase [Streptococcus equi subsp. equi 4047] Length = 652 Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 219/704 (31%), Positives = 366/704 (51%), Gaps = 57/704 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DSEYD L R + +P + P Sbjct: 2 KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILKDSPT---QL 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + K H P SL+ ++ E+L F RI + + + + E KIDG Sbjct: 59 VGSTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRIKSAFPEAE-----YLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG GE+++ I+ I IP+ LS + + +RGE Y+S+ Sbjct: 114 SISLVYEAGVLKVGATRGDGTIGENITENIKNIKDIPKRLSQALD--VTIRGEAYMSRQA 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255 F +N+E G +ANPRNAA+G LR+L+ + + F +G + A Q Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLYQEVGLET---ADSQQ 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + L+++ LGF VN+ +++ + I + +++ R LPY+IDG+V KV++ ++Q++L Sbjct: 229 KTLERLADLGFSVNSHYLLSSSMNDIWDFIQSIEASREELPYEIDGVVVKVNQLAIQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++ ++ +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR+GD V+V +AG++IP V+ ++ +R D P P+ CP Sbjct: 349 VDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKRR-DQAPMPIPTACP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 CQS++V + A RC L C + L+HF SR A NI GLG ++ + Sbjct: 397 SCQSQLVHFEDE------VALRCINPL-CPSLVQRSLEHFASRQAMNIAGLGPAVVEKLY 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 A + ADI+ L S + + G + S L +I + + S E+ +F Sbjct: 450 S----AGLVHDVADIYRL------SLEDLLTLDGIKEKSAEKLLAAIEQSKANSAEKLLF 499 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIRH+GA+ +R + + Y ++ ++A ++ L ++ +G +I Q++V++ Sbjct: 500 GLGIRHIGAKASRLILEAY-------GDLEALLAVTAEE---LAQIDGLGLVIGQSLVQY 549 Query: 616 YQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +Q + A LK ++ + + + +V TG L+K+ R +A E + QL Sbjct: 550 FQQ-EQAAQLLAELKSAGVNLAYLGQRPDQQAALFGLTVVLTGKLEKLNRTQAMEKLEQL 608 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 GA V+ +S+KTD+++ G GSKL KAQQLG++I +E+ L L Sbjct: 609 GAKVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652 >gi|305431677|ref|ZP_07400846.1| NAD-dependent DNA ligase LigA [Campylobacter coli JV20] gi|304445272|gb|EFM37916.1| NAD-dependent DNA ligase LigA [Campylobacter coli JV20] Length = 647 Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 231/692 (33%), Positives = 369/692 (53%), Gaps = 70/692 (10%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYDAL R F + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDALIREL----RVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L+++W++ED+ F R W K+ F +EPK DG + + YE GK V A Sbjct: 74 ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++N E IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEVGEDITLNVLEIDNIPK--TINYKEKIEIRGEVVILKDDFEKINEKRALLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T IT R L F+ G+G+ + F K E++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 ++ ++ YNE+ S+R P +DG+V +VD+ +L K+LG + P++M + KF Sbjct: 244 IKLCANLDEVLKAYNELLSLRDQKPMMMDGMVVRVDDLALCKELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+++ D V V R+G+VIPK+ + R S P CP CQS ++ + G Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ +C + C + + + HFVS+ NI+GLG+ ++ FK + I IF Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLFKEK----KINTLESIF 459 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L+ + E + GF + + N+ ++I + R+ L RFI +LGI H+G A+ LA Sbjct: 460 HLK------FSDFEGLEGFKEKKINNILNAIEQARDCELFRFITALGIEHIGEVAAKKLA 513 Query: 572 KYYLSYQNFAQEIN--NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ-NPRNICAVEAL 628 +F +E + ++ A+ N + G+ +A ++ EF + N I L Sbjct: 514 ------LSFGKEWHKQSLEAYAN--------LEGFGEQMALSLCEFSRVNSARIDEFYKL 559 Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 L + E +V I K V TG L + R + + + LG VS +S+KTD + Sbjct: 560 LNLKEQKVQIQEDSV---IFGKTFVITGALSR-PRDEFKNLIESLGGKVSGSVSKKTDYV 615 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G GSKL+KAQ+LGVK ++E +F L+++ Sbjct: 616 LFGQEAGSKLDKAQELGVKCIDENEFNELIEK 647 >gi|167770441|ref|ZP_02442494.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM 17241] gi|167667036|gb|EDS11166.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM 17241] Length = 664 Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 210/708 (29%), Positives = 363/708 (51%), Gaps = 53/708 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E A++ + L I H+ YY +P + D EYD L + AFP+LA P Sbjct: 7 LESAKRRVQELRTVIEKHNHSYYVLDRPTVSDYEYDRLLHELIDLEEAFPELASDHSPT- 65 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++GG + V H + SL+ +++ +L F R+ ++ + +EPK Sbjct: 66 --RRVGGAALNTFAPVRHEVQMGSLQDVFDTAELEAFDARVREQIERP-----VYIVEPK 118 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG + + Y+ G F + RGDG +GEDVS ++ + +IP L +P +IEVRGEVY+ Sbjct: 119 IDGLSVALEYQDGVFFRGSTRGDGVTGEDVSENLKTVRSIPMTLPEALP-LIEVRGEVYM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 ++ F + + +P+ NPRNAA+G LR+ + R L+ FV + + Sbjct: 178 PRSSFERVVARQLENEEEPFKNPRNAAAGSLRQKDSRVTAQRGLDIFVFNIQRIEGKTLS 237 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 G E L M+ LGF V + + ++ + + R P+DIDG V KVD+F+ + Sbjct: 238 GHKESLDYMKSLGFKVIPSYKAFDNISDAIAEVERIGAQRYEFPFDIDGAVIKVDDFAQR 297 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG ++ P+W ++ K+ ++ + L DI+I++GRTG LTP A EP+ + G ++ A Sbjct: 298 EALGATSKFPKWAVAFKYPPEEKQSVLRDIEIKVGRTGALTPTAVFEPITLAGTTVSRAV 357 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFP 431 LHN+D+I + I +GD ++V++AG++IP+VV + RH PDA + P Sbjct: 358 LHNQDFIN-----------EKGIAIGDTIVVRKAGDIIPEVVSVA---RHQPDAPVYQIP 403 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S R+ A RC +AC AQ L HF SRDA +I+G+G + Sbjct: 404 AVCPSCGSTAEREEGE------AVLRCV-NMACPAQVARNLTHFASRDAMDIDGMGPAIV 456 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 A ++ AD+++L + Q + ++ G+ S NL ++ + ++ L Sbjct: 457 HQLLA----AGLVKSAADLYSLTQAQLAALERM------GERSAQNLIAALEQSKSRDLA 506 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R +++LGIR +G A+ LA+ + + ++ ++A + ++ + ++ G I+AQ Sbjct: 507 RLLYALGIRGIGQRSAQLLAQRFGT-------MDGVLAASVEE---IAQIDGFGGIMAQN 556 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +F+ N ++ L+ ++ + + K V TGTL + R +A+ + Sbjct: 557 TADFFALEPNRALIDR-LRAAGLNMACTSAPTADTLSGKIFVLTGTLPTLTRGEAKAMIE 615 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS +S+KTD ++ G+ GSKL KA +LGV +++E +L+ Sbjct: 616 AAGGKVSGSVSKKTDYVVAGEEAGSKLRKAGELGVAVLDEAALRAMLE 663 >gi|195977913|ref|YP_002123157.1| NAD-dependent DNA ligase LigA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|254781421|sp|B4U2C7|DNLJ_STREM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|195974618|gb|ACG62144.1| DNA ligase LigA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 652 Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 219/707 (30%), Positives = 370/707 (52%), Gaps = 63/707 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DSEYD L R + +P + P Sbjct: 2 KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILKDSPT---QL 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F RI + + + + E KIDG Sbjct: 59 VGGTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRIKSAFPEAE-----YLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG GE+++ I+ I IP+ LS + + +RGE Y+S+ Sbjct: 114 SISLVYEAGILKVGATRGDGTIGENITENIKNIKDIPKRLSQALD--VTIRGEAYMSRKA 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255 F +N+E G +ANPRNAA+G LR+L+ + + F +G + A Q Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLYQEVGLEA---ADSQQ 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 L+++ LGF VN+ +++ + I + +++ R LPY+IDG+V KV++ ++Q++L Sbjct: 229 RTLERLADLGFSVNSHYLLSSSMNDIWDFIQSIEATREELPYEIDGVVVKVNQLAIQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++ ++ +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR+GD V+V +AG++IP V+ ++ +R + P P+ CP Sbjct: 349 VDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKRS-NQTPMPIPTACP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 CQS++V + A RC L C + L+HF SR A NI GLG ++ + Sbjct: 397 SCQSQLVHFEDE------VALRCINPL-CPSLIQRSLEHFASRQAMNIAGLGPAVVEKLY 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLER 552 A + DI+ L +E++L G + S L +I + + S E+ Sbjct: 450 S----AGLVHDVTDIYRL---------SLEDLLMLDGIKEKSAEKLLAAIEQSKANSAEK 496 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRH+GA+ +R + + Y ++ +++ ++ L ++ +G +I Q++ Sbjct: 497 LLFGLGIRHIGAKASRLILETY-------GDLETLLSVTAEE---LAQIDGLGLVIGQSL 546 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 V+++Q + + A LK ++ + +E+ +V TG L+K+ R +A+E + Sbjct: 547 VQYFQQDQ-ATQLLAELKSAGVNLAYLGQRPDRQAELFGLTVVLTGKLEKLNRTQAKEKL 605 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 QLGA V+ +S+KTD+++ G GSKL KAQQLG++I +E+ L L Sbjct: 606 EQLGAKVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652 >gi|307720805|ref|YP_003891945.1| DNA ligase, NAD-dependent [Sulfurimonas autotrophica DSM 16294] gi|306978898|gb|ADN08933.1| DNA ligase, NAD-dependent [Sulfurimonas autotrophica DSM 16294] Length = 650 Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 226/697 (32%), Positives = 371/697 (53%), Gaps = 69/697 (9%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLNKIGGEMNLSLF 87 +YH YY PI+ D YD L + + A P D+ + N P ++G ++ Sbjct: 17 AYH---YYVLDDPIMTDEVYDKLYKEVEQYEEAHPEDILK----NSPTQRVGDVVSEGFA 69 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H SLE I++ + L+K++ ++YR D+ + F EPK DG + + YE G+ Sbjct: 70 KEPHLSRMWSLEDIFDADGLKKWLEKVYRL-----DSHVTFYCEPKYDGASLNLVYENGE 124 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 RGDG GE ++ ++ I T+P LS+ E+IE+RGEV I K++F +N E + Sbjct: 125 LQKGITRGDGTVGERITQNVKTIHTVP--LSIEHKELIEIRGEVVIFKDEFDKINKERLK 182 Query: 208 VGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266 G P+ANPRNAA+G LR+L+P+ R L F +G+G + + K + + + LGF Sbjct: 183 KGEPPFANPRNAAAGSLRQLDPSITAARNLVFLPYGVG-VNTLPHKLLNDKMSYIYELGF 241 Query: 267 --PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 P + + + I + Y MK R + +DG+V KV+E + Q +G + PRW Sbjct: 242 RKPPLRAITKG--YDEIEAIYERMKEERESYSMMLDGMVVKVNEIAAQIDMGYTVKVPRW 299 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 +++KF + TRL +I +Q+GRTG++TPVA +EP I GA++ ATLHN D I+ + Sbjct: 300 AVAYKFPAVEKITRLKNIILQVGRTGVVTPVAVVEPTEIEGAVVERATLHNFDEIERM-- 357 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 DIR+GD+V++ R+G+VIPK+V ++ ER P+ CP+C S ++++ Sbjct: 358 ---------DIRIGDQVIILRSGDVIPKIVKVLTQERDGSEVKIERPTHCPVCGSELLQE 408 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 +C L C A+ + + +F S+ NI+GLG + ++ F A + Sbjct: 409 --------EVLIKCQ-NLKCEARVVNSIIYFASKQCLNIDGLGNKIVEQLFN----AGLV 455 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 R D+F+L + K+ + GF + NL SI + L RFI +LGI H+G Sbjct: 456 RSVLDLFSL------TQEKLLELEGFKEKKAQNLLRSIENAKGCELWRFINALGIEHIGE 509 Query: 565 EIARSLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ-NPRNI 622 ++ +A+ + L Y H N + L+ + +GD +A++ +EF + N + Sbjct: 510 VASKRIAEAFGLEY-----------IHQNKE--QLLTIEGIGDEMAESYLEFMRVNEETV 556 Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 ++ +L+ V P + E+ + + K++V TGT+ + R +E + LGA VS +S Sbjct: 557 VKLQEILRPVEPK--KREEAQDNPFKGKRIVLTGTMSE-PRPVIKEKLEDLGAKVSGSVS 613 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +KTD +I G++ GSK +KA LGVK + E++ LLQ Sbjct: 614 KKTDYVIYGEDAGSKYDKAISLGVKTLTEDELKELLQ 650 >gi|94994051|ref|YP_602149.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10750] gi|123257616|sp|Q1J7G9|DNLJ_STRPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|94547559|gb|ABF37605.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10750] Length = 652 Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 222/699 (31%), Positives = 367/699 (52%), Gaps = 62/699 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL+ L Y YY P + DS+YD L R + ++P+ + P ++ Sbjct: 6 KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ K + + + E KIDG Sbjct: 60 GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G A RGDG+ GE+++ I+ I IP LS P I VRGE Y+S+ F Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 A+N+ G +ANPRNAA+G LR+L+ + R L F++ + S Q E+ Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLYQ--EASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ + P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFI 554 A + ADI+ L + EN + G + S L +I ++ S E+ + Sbjct: 450 --LAGFVHDVADIYQLTK---------ENFMQLDGIKEKSADKLLAAIEASKSNSAEKLL 498 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIRH+G++++R + + Y +I+ ++ ++ + R+ +G IAQ++ + Sbjct: 499 FGLGIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQ 548 Query: 615 FYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +++ V+ L V+ + N + + +V TG L ++ R++A++ + L Sbjct: 549 YFEQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEAL 608 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 GA V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ Sbjct: 609 GAKVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647 >gi|302537077|ref|ZP_07289419.1| DNA ligase, NAD-dependent [Streptomyces sp. C] gi|302445972|gb|EFL17788.1| DNA ligase, NAD-dependent [Streptomyces sp. C] Length = 736 Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 228/738 (30%), Positives = 370/738 (50%), Gaps = 71/738 (9%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR++ L +++ H YY +P++ D+E+D L R +A+ +P+L P+ P Sbjct: 14 AREQHQLLAEQVEEHRFRYYVNDQPVVSDAEFDQLLRSLEALEEQYPEL---RTPDSPTQ 70 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K+ G V H LSL+ ++ E+L + R+ R D + E K+DG Sbjct: 71 KVAGAYETDFASVEHRERMLSLDNAFDDEELSAWADRVARDVNTPD---YHYLCELKVDG 127 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 + + YE G+ AA RGDG +GED++ +R I IP R+ IP ++E+RGEVY Sbjct: 128 LAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRIPALVEIRGEVYFPM 187 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 F LN ++ KP+ANPRNAA+G LR+ +P TR L+ VHG+G + Q Sbjct: 188 EKFEELNARLVEASGKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGFEIERQ 247 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + + +R G P + ++ + + R ++ ++IDG+V K+DE +LQ + Sbjct: 248 SQAYELLREWGLPTARHNKVVSSLAEVREFIALFGENRHSVEHEIDGVVVKLDEIALQGR 307 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ + ATLH Sbjct: 308 LGSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFATLH 367 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N++ +K + + +GD V++++AG+VIP+++ +V+ R + F P+ C Sbjct: 368 NQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMPALC 416 Query: 435 PICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 P C + +L P K G + RC G C AQ ER+ + R + +IE G Sbjct: 417 PECGT----ELRPMKEGDIDV--RCPNGQTCPAQLRERIYYLAGRQSLDIENFGIVAAAA 470 Query: 494 FFKSEDPAFSIRI-PADIFTL--------------------QRRQQTSTTKIENIL---- 528 +PA + D+F L +R +T KI + Sbjct: 471 LTGPLEPAQPPLLDEGDLFDLTIEQLLPIKAYVRDPDSGLPKRDPKTGEEKIVTVFANQK 530 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G + + ++I + L R I L IRHVG A +LA+ + S Q Sbjct: 531 GEPKKNALAMLENIAAAKQRPLARIINGLSIRHVGPVAAEALAREFRSIDRIEQATEE-- 588 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-- 646 L VG IIA ++ E++ + + +L++ + R E+ S+E Sbjct: 589 --------ELTATEGVGAIIAASLKEWFA----VDWHQEILRKWRAAGVRMEEEGSAEEE 636 Query: 647 ----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 +E +V TGTLQ R A+E + GA V+ +S+KT ++VGDNPGSK +KA Sbjct: 637 GPRPLEGLTVVVTGTLQNHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAV 696 Query: 703 QLGVKIMNEEQFLFLLQQ 720 QLG+ I+++ F LL+Q Sbjct: 697 QLGLAILDDAGFEVLLEQ 714 >gi|297202535|ref|ZP_06919932.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083] gi|197709937|gb|EDY53971.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083] Length = 730 Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 229/745 (30%), Positives = 380/745 (51%), Gaps = 82/745 (11%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR++ + L ++I H YY P++ D+++D L R +A+ +P+L P+ P Sbjct: 14 EAREKHAQLAEQIEEHRFRYYVNDAPVVSDADFDKLLRSLEALEDEYPEL---RTPDSPT 70 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL--EPK 133 K+ G V H LSL+ ++ E+L + R+ KD + + L E K Sbjct: 71 QKVAGAYETEFTSVQHRSRMLSLDNAFSDEELAAWAERV-----AKDVGTTDYHLLCELK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG + + YE G+ AA RGDG +GED++ +R I IP R+ +P+++E+RGEVY Sbjct: 126 VDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGDKVPDLVEIRGEVY 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G E F Sbjct: 186 FPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAL-EGF- 243 Query: 252 KGQYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 G + Q ++ G P + + G+ + R ++ ++IDG V K+DE Sbjct: 244 DGMTRLSQGYDLLKSWGLPTAKHNKVVDGLDGVREFIAYFGENRHSVEHEIDGAVVKLDE 303 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ +LG +R+PRW I++K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + Sbjct: 304 IPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAGSEV 363 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN+D +K ++G + +GD V++++AG+VIP+++ +V+ R + F Sbjct: 364 EFATLHNQDVVK--------LKG---VLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREF 412 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG- 487 P+ CP C + +R + L RC C AQ ERL + R + +IE G Sbjct: 413 VMPAECPECGT-ALRPMKEGDVDL----RCPNARTCPAQLRERLFYLAGRKSLDIEHFGY 467 Query: 488 --KQQLDFFFKSEDPAFSIRIPADIFTL--------------------QRRQQTSTTKIE 525 L + DP + D+F L +R +T K+ Sbjct: 468 VAAAALTQPLEPSDPPLTDE--GDLFDLTIEQLLPIKAYVLDQDSGLPKRDPKTGEEKVA 525 Query: 526 NIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 + G + + ++I ++ L R + L IRHVG A +LA+ + S Sbjct: 526 TVFANQQGEPKKNAVAMLENIAAAKDRPLARVLTGLSIRHVGPVAAEALARNFRSIDRIE 585 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 Q +A+ + VG IIA+++ E++ + + +L++ + R E+ Sbjct: 586 QASEEELANTDG----------VGSIIAKSLKEWFAEDWH----QEILRKWKAAGVRMEE 631 Query: 642 NVSSE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 S E +E +V TGTL++ R A+E + GA V+ +S+KT ++VGDNPG Sbjct: 632 EGSGEDEGPRPLEGLTVVVTGTLERFTRDGAKEALQSKGAKVTGSVSKKTSFVVVGDNPG 691 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720 SK +KA QL V ++NE+ F LL+Q Sbjct: 692 SKYDKAMQLKVPVLNEDGFDVLLEQ 716 >gi|19745839|ref|NP_606975.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS8232] gi|94990137|ref|YP_598237.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10270] gi|139474058|ref|YP_001128774.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes str. Manfredo] gi|81632934|sp|Q8P1L1|DNLJ_STRP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123258039|sp|Q1JHP3|DNLJ_STRPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216247|sp|A2RFD0|DNLJ_STRPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|19747987|gb|AAL97474.1| putative DNA ligase [Streptococcus pyogenes MGAS8232] gi|94543645|gb|ABF33693.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10270] gi|134272305|emb|CAM30559.1| DNA ligase [Streptococcus pyogenes str. Manfredo] Length = 652 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 220/696 (31%), Positives = 366/696 (52%), Gaps = 56/696 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL+ L Y YY P + DS+YD L R + ++P+ + P ++ Sbjct: 6 KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ K + + + E KIDG Sbjct: 60 GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G A RGDG+ GE+++ I+ I IP LS P I VRGE Y+S+ F Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 A+N+ G +ANPRNAA+G LR+L+ + + R L F++ + S Q E+ Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLYQ--EASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ + P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKED------FMQLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + Y +I+ ++ ++ + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L V+ + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647 >gi|50913936|ref|YP_059908.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10394] gi|81372213|sp|Q5XCY8|DNLJ_STRP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50903010|gb|AAT86725.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10394] Length = 652 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 220/696 (31%), Positives = 366/696 (52%), Gaps = 56/696 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL+ L Y YY P + DS+YD L R + ++P+ + P ++ Sbjct: 6 KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ K + + + E KIDG Sbjct: 60 GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G A RGDG+ GE+++ I+ I IP LS P I VRGE Y+S+ F Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 A+N+ G +ANPRNAA+G LR+L+ + + R L F++ + S Q E+ Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLYQ--EASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ + P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKED------FMQLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + Y +I+ ++ ++ + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L V+ + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647 >gi|258648381|ref|ZP_05735850.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259] gi|260851551|gb|EEX71420.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259] Length = 677 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 228/722 (31%), Positives = 376/722 (52%), Gaps = 57/722 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I + + L +E+ H+ YY + P ILD+++DAL + + P+ A D Sbjct: 2 IAIMNEKDRIDFLRKELHRHNYNYYVKNNPEILDADFDALMQELADLEQKHPEWA---DN 58 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++G +++ +V H P LSL ++ ++++F RI + ++ E Sbjct: 59 NSPTVRVGSDLSNDFVQVRHQYPMLSLGNTYDKAEIKEFYDRITGDLKG---SAFEICCE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL--SLNIPEIIEVRG 189 K DG I++ YE G+ + A RGDG G+DV+ I+ I +IP L L P EVRG Sbjct: 116 LKFDGLSISLLYEDGRLIRAVTRGDGSVGDDVTENIKTIKSIPLQLQEGLGWPRRFEVRG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTS 247 EV + F LN E G +ANPRNAASG L+ N + +R L+ + + LG+ Sbjct: 176 EVLMPWASFEKLNTERETNGEPLFANPRNAASGTLKSKNSAVVASRRLDAYLYYVLGE-- 233 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 +I K YE L ++ GF V+ + + + I +Y + + R LP DG+V KVD Sbjct: 234 DIPKKSHYENLLMIKKWGFKVSENIHLSKSLDNIYAYIDHWDTERRYLPVATDGIVLKVD 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + Q+QLG A+SPRW I++KF ++A T LLD+ Q+GRTG +TPVA ++PV + G Sbjct: 294 NLNQQQQLGSTAKSPRWAIAYKFKAERARTHLLDVIYQVGRTGAVTPVAVMDPVLLAGTT 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD-AQ 426 + A+LHNED I+ L D+ D V V++AGE+IP++V + + R+ Sbjct: 354 VKRASLHNEDIIQQL-----------DLHYNDFVFVEKAGEIIPQIVGVDKDARNESLGD 402 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F + CP C + ++R N AA C C Q R++HF+SRDA +I L Sbjct: 403 KVHFITQCPECGTHLIRFPNE------AATYCPNDATCPPQIKGRIEHFISRDAMDINSL 456 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV---SVTNLYDSIN 543 G + +D +++ I AD++ L +IE++ G S + + I Sbjct: 457 GPETIDNYYERG----LIHDIADLYKL---------RIEDLAGSDATRLKSARKIIEGIE 503 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K ++ +R +++LGIR VG +A++LA Y+ S ++ + A ++ L++V Sbjct: 504 KSKSTPFDRVLYALGIRFVGKVVAKTLAAYFHS-------MDALQAATLEE---LLQVEG 553 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 VG IA+ + +++ +P N+ ++ L + VS+ + K +V +GT + R Sbjct: 554 VGQTIAENVRQWFMSPTNLQILDRLTVAGLQMTADVSRQVSNRLAGKSIVISGTFTRHSR 613 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + + + G +S+KTD I+ GDN G SK KA+ LG+ ++ EE FL +L + + Sbjct: 614 EEYKAIIEENGGKNVGSISKKTDFILAGDNMGPSKRTKAEALGIPLLQEEAFLAMLDEES 673 Query: 723 TT 724 TT Sbjct: 674 TT 675 >gi|225868755|ref|YP_002744703.1| DNA ligase [Streptococcus equi subsp. zooepidemicus] gi|225702031|emb|CAW99626.1| DNA ligase [Streptococcus equi subsp. zooepidemicus] Length = 652 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 220/707 (31%), Positives = 370/707 (52%), Gaps = 63/707 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L ++ + YY P + DSEYD L R + +P + P Sbjct: 2 KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILKDSPT---QL 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + K H P SL+ ++ E+L F RI + + + + E KIDG Sbjct: 59 VGGTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRIKSAFPEAE-----YLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG GE+++ I+ I IP+ LS + + +RGE Y+S+ Sbjct: 114 SISLVYEAGVLKVGATRGDGTIGENITENIKNIKDIPKRLSQALD--VTIRGEAYMSRQA 171 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKGQY 255 F +N+E G +ANPRNAA+G LR+L+ + + F +G + A+ Q Sbjct: 172 FKTINEERQENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLYQEVGLEA---AESQQ 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 L+++ LGF VN+ +++ I + +++ R LPY+IDG+V KV++ ++Q++L Sbjct: 229 RTLERLADLGFSVNSHYLLSSSMTDIWDFIQSIEATREQLPYEIDGVVIKVNQLAIQEEL 288 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G ++PRW I++KF ++ ++ +D +GRTG++TP A L PV + G ++ ATLHN Sbjct: 289 GFTVKAPRWAIAYKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHN 348 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 DYI +DIR+GD V+V +AG++IP V+ ++ +R + P P+ CP Sbjct: 349 VDYI-----------AEKDIRIGDTVVVYKAGDIIPAVLRVVEAKRS-NQTPMPIPTACP 396 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 CQS++V + A RC L C + L+HF SR A I GLG ++ + Sbjct: 397 SCQSQLVHFEDE------VALRCINPL-CPSLIQRSLEHFASRQAMAIAGLGPAVVEKLY 449 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLER 552 A + ADI+ L +E++L G + S L +I + + S E+ Sbjct: 450 S----AGLVHDVADIYRL---------SLEDLLTLDGIKEKSAEKLLAAIEQSKANSAEK 496 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRHVGA+ +R + + Y ++ +++ ++ L ++ +G +I Q++ Sbjct: 497 LLFGLGIRHVGAKASRLILETY-------GDLETLLSVTAEE---LAQIDGLGLVIGQSL 546 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 V+++Q + + A LK ++ + +E+ +V TG L+K+ R +A+E + Sbjct: 547 VQYFQQDQ-AAQLLAELKSAGVNLAYLGQRPDRQAELFGFTVVLTGKLEKLNRTQAKEKL 605 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 QLGA V+ +S+KTD+++ G GSKL KAQQLG++I +E+ L L Sbjct: 606 EQLGAKVTGSVSKKTDLVVAGSEAGSKLAKAQQLGIRIEDEDWLLNL 652 >gi|209559128|ref|YP_002285600.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes NZ131] gi|254781429|sp|B5XKP3|DNLJ_STRPZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|209540329|gb|ACI60905.1| DNA ligase [Streptococcus pyogenes NZ131] Length = 652 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 222/699 (31%), Positives = 367/699 (52%), Gaps = 62/699 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL+ L Y YY P + DS+YD L R + ++P+ + P ++ Sbjct: 6 KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ K + + + E KIDG Sbjct: 60 GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G A RGDG+ GE+++ I+ I IP LS P I VRGE Y+S+ F Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 A+N+ G +ANPRNAA+G LR+L+ + R L F++ + S Q E+ Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTAVVAKRELATFLYQ--EASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ + P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFI 554 A + ADI+ L + EN + G + S L +I ++ S E+ + Sbjct: 450 --LAGFVHDVADIYQLTK---------ENFMQLDGIKEKSADKLLAAIEASKSNSAEKLL 498 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIRH+G++++R + + Y +I+ ++ ++ + R+ +G IAQ++ + Sbjct: 499 FGLGIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQ 548 Query: 615 FYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 +++ V+ L V+ + N + + +V TG L ++ R++A++ + L Sbjct: 549 YFEQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEAL 608 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 GA V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ Sbjct: 609 GAKVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647 >gi|71903217|ref|YP_280020.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS6180] gi|123761437|sp|Q48UE1|DNLJ_STRPM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71802312|gb|AAX71665.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS6180] Length = 652 Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 220/696 (31%), Positives = 366/696 (52%), Gaps = 56/696 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL+ L Y YY P + DS+YD L R + ++P+ + P ++ Sbjct: 6 KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ K + + + E KIDG Sbjct: 60 GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G A RGDG+ GE+++ I+ I IP LS P I VRGE Y+S+ F Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 A+N+ G +ANPRNAA+G LR+L+ + R L F++ + S Q E+ Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLYQ--EASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I ++ +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWNFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ + P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKED------FMQLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + Y +I+ ++ ++ + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L V+ + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647 >gi|34540958|ref|NP_905437.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83] gi|81417286|sp|Q7MV47|DNLJ_PORGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|34397273|gb|AAQ66336.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83] Length = 669 Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 227/714 (31%), Positives = 369/714 (51%), Gaps = 56/714 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A+ IE+ R+ L H+ YY S P I D EYDA+ ++ + + +P+ + Sbjct: 8 AVRIEELRRILRE-------HEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEW---DS 57 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ P +++G + V H P LSL +N +++ F R+ Q Sbjct: 58 PDSPTHRVGSDKTEGFASVRHDRPMLSLSNTYNYDEIGDFYRRVSEGLQGA---PFEIVA 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189 E K DG I++ YE G V A RGDG G+DV+A +R I ++P R+ + P ++EVRG Sbjct: 115 ELKFDGLSISLIYEDGMLVRAVTRGDGIMGDDVTANVRTIRSVPLRLRGDDYPRMLEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E+ + +F +N + A G +ANPRNAASG +++L+P + R L+ + + L + E Sbjct: 175 EILLPFKEFDRINAQREAEGEPLFANPRNAASGTIKQLDPHIVAGRNLDAYFYYL-YSDE 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A+ Y+ L + R GF V++ V + + ++ + + R TLP DG+V KV+ Sbjct: 234 PLAENHYDRLMQARQWGFKVSDAVTLCCSKEEVYAFIDRFDTERLTLPVATDGIVLKVNA 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q LG A+SPRW I++K+ ++ TRL + Q+GRTG +TPVA L+PV I G ++ Sbjct: 294 PAQQDLLGFTAKSPRWAIAYKYQAERVRTRLQHVSYQVGRTGAVTPVANLDPVLISGTVV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN D+I +D+ GD V V++ GE+IPK+V + + R D +P Sbjct: 354 RRASLHNADFI-----------AEKDLHEGDFVYVEKGGEIIPKIVGVDTDARSIDGRPI 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 F CP C + +VR+ AA+ C C QQ RL+H+ R +I +G Sbjct: 403 VFTVLCPDCATPLVREQGE------AAYYCPNAEGCPQQQKGRLEHYCGRKTADI-NIGP 455 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ + IR AD + L Q + + GF + L DSI + Sbjct: 456 ETIELLYSRN----MIRNVADFYALTEEQ------LLTLPGFKKRAAAKLLDSIEASKAR 505 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 + +F LGIR VG +A+ LA Y S I+ + A +++ L+++ +G+ I Sbjct: 506 PYQAILFGLGIRFVGETVAKKLAAVYPS-------IDALAAATSEE---LVQIDEIGERI 555 Query: 609 AQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A A++ F+ +N +E L L VS VS+ + K +V +GT +K R + + Sbjct: 556 AAAVLHFFSLRQNRELIERLRLAGVSLEAETVSVAVSNRLAGKTVVISGTFEKRSRDEYK 615 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 V G ++ +S KT I+ G + G SK EKA++LGV++M+EE+FL L+++ Sbjct: 616 AMVEDNGGRMAGSVSSKTSFILAGSDMGPSKREKAEKLGVRLMSEEEFLRLIEE 669 >gi|315653834|ref|ZP_07906750.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195] gi|315488530|gb|EFU78176.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195] Length = 672 Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 229/717 (31%), Positives = 380/717 (52%), Gaps = 69/717 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L DP Sbjct: 4 LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG L KV H P LS+ +++ ++L +F RI QK + + + +E Sbjct: 61 DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVRGE Sbjct: 117 LKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G +ANPRNAA+G LR+L+ ++T R L+ F++ E Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G +++ Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C +V K A RC + C AQ E + HF SR A NI GLG + Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454 Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 QL D AD++ L S ++ + F D S+ NL ++I + Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+E +F LGI HVGA+ AR +A+ + ++N I + D L+++ +G Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAQKF-------HDLNTIRECSIAD---LMQIDTIGQ 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658 IA+++V++++ +V+AL+ ++ + +G + + + K +V TG L Sbjct: 552 AIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVI 664 >gi|15674800|ref|NP_268974.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes M1 GAS] gi|71910386|ref|YP_281936.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS5005] gi|81533831|sp|Q9A0J5|DNLJ_STRP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|13621930|gb|AAK33695.1| putative DNA ligase [Streptococcus pyogenes M1 GAS] gi|71853168|gb|AAZ51191.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS5005] Length = 652 Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 220/696 (31%), Positives = 366/696 (52%), Gaps = 56/696 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL+ L Y YY P + DS+YD L R + ++P+ + P ++ Sbjct: 6 KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ K + + + E KIDG Sbjct: 60 GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G A RGDG+ GE+++ I+ I IP LS P I VRGE Y+S+ F Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPYQLSE--PLTITVRGEAYMSRQSF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 A+N+ G +ANPRNAA+G LR+L+ + + R L F++ + S Q E+ Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLYQ--EASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ + P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKED------FMQLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + Y +I+ ++ ++ + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L V+ + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647 >gi|329920507|ref|ZP_08277239.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G] gi|328936183|gb|EGG32636.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G] Length = 672 Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 229/717 (31%), Positives = 380/717 (52%), Gaps = 69/717 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L DP Sbjct: 4 LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG L KV H P LS+ +++ ++L +F RI QK + + + +E Sbjct: 61 DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVRGE Sbjct: 117 LKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN + G +ANPRNAA+G LR+L+ ++T R L+ F++ E Sbjct: 175 YMDKATFAKLNFKRDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G +++ Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C +V K A RC + C AQ E + HF SR A NI GLG + Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454 Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 QL D AD++ L S ++ + F D S+ NL ++I + Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+E +F LGI HVGA+ AR +AK + ++N I + D L+++ +G Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAKKF-------HDLNTIRECSIAD---LMQIDTIGQ 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658 IA+++V++++ +V+AL+ ++ + +G + + + K +V TG L Sbjct: 552 TIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVV 664 >gi|320334549|ref|YP_004171260.1| DNA ligase [Deinococcus maricopensis DSM 21211] gi|319755838|gb|ADV67595.1| DNA ligase [Deinococcus maricopensis DSM 21211] Length = 671 Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 223/702 (31%), Positives = 355/702 (50%), Gaps = 55/702 (7%) Query: 26 QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85 Q I +H+ YY+ P I D+EYDAL R A A P+ P P K+GG + + Sbjct: 11 QTIQHHNRLYYEQDTPEISDAEYDALMRELRAAEAAHPEWI---TPESPTQKVGGAPSSA 67 Query: 86 LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMITIRYE 144 VTH P SL+ ++N E+L + ++ R D + + +T E KIDG + + Y Sbjct: 68 FQPVTHPTPMTSLDNVFNDEELTDWGAKLARALGAAPDTADYAYTCELKIDGLSVNLYYV 127 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204 G +AA RG+G GE V+ + IP IPR L + +EVRGEVY+S+ +F + N Sbjct: 128 DGVLQWAATRGNGVVGEIVTEQVLTIPEIPRTLP-GLKGELEVRGEVYLSREEFASYNAL 186 Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 +G NPRN A+G LR+ +P + R L ++ LGK + A+ Q+++L + Sbjct: 187 AEELGLPLLKNPRNGAAGALRQKDPKETAKRRLRAILYALGKRDGVPARTQWDVLTWLAE 246 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 GFP + + +Y+ M + R+ LP+D DG V K+D+ Q+ G +R+PR Sbjct: 247 QGFPTSAYSERVQGLPAAAAYHARMVADRANLPFDADGTVIKLDDLRAQEDAGFTSRAPR 306 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W I++KF ++ T+LL I I +GRTG L P+A LEP I G+ ++ ATLHNED+I+ L Sbjct: 307 WAIAYKFPVEEVQTKLLSITINVGRTGKLAPLAHLEPRLIEGSTVSKATLHNEDFIRNL- 365 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 D+R+GD VLV++AG VIP++V + R ++PF FP+ CP C VR Sbjct: 366 ----------DLRIGDTVLVRKAGGVIPEIVRNLTELRADHSEPFEFPTHCPECGHAAVR 415 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 + A C AC AQ ERL++FVSR A +I GLG++ ++ + Sbjct: 416 ------AEGDANTYCVNP-ACPAQAYERLRYFVSRGAMDIRGLGEKLIEQLLQ----GGL 464 Query: 504 IRIPADIFTLQRRQ-----QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 +R AD ++L Q ++ T K +N+L + + + L R + +LG Sbjct: 465 VRDAADFYSLTEAQLAGLERSGTKKAQNVL-----------RELEESKKQPLWRLVNALG 513 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 + VG A+ L + + S IA + VG+ +AQ++ + Sbjct: 514 MPGVGERNAQVLTRAFPSLDALLAATPEQIASIHG----------VGETLAQSVHAALHD 563 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 + L ++ + ++ V TGTL + R + ++ LGA +S Sbjct: 564 ATMTDLLGRLRAADLNTVEEVDAPQGEQLAGTTFVITGTLSR-PRDVFKAHLESLGARIS 622 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +++KT ++ G++ GSKL+KA++ GV I++E LL + Sbjct: 623 GSVTKKTTYLLAGEDAGSKLDKARENGVTILDEAALGALLTE 664 >gi|309803834|ref|ZP_07697919.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d] gi|312870780|ref|ZP_07730886.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a] gi|312873110|ref|ZP_07733169.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1] gi|308164068|gb|EFO66330.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d] gi|311091343|gb|EFQ49728.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1] gi|311093656|gb|EFQ51994.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a] Length = 672 Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 229/717 (31%), Positives = 380/717 (52%), Gaps = 69/717 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L DP Sbjct: 4 LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG L KV H P LS+ +++ ++L +F RI QK + + + +E Sbjct: 61 DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVRGE Sbjct: 117 LKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G +ANPRNAA+G LR+L+ ++T R L+ F++ E Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G +++ Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C +V K A RC + C AQ E + HF SR A NI GLG + Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454 Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 QL D AD++ L S ++ + F D S+ NL ++I + Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+E +F LGI HVGA+ AR +A+ + ++N I + D L+++ +G Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAQKF-------HDLNTIRECSIAD---LMQIDTIGQ 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658 IA+++V++++ +V+AL+ ++ + +G + + + K +V TG L Sbjct: 552 AIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKEKNVVLTGKL 607 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVV 664 >gi|297156986|gb|ADI06698.1| NAD-dependent DNA ligase LigA [Streptomyces bingchenggensis BCW-1] Length = 728 Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 235/748 (31%), Positives = 368/748 (49%), Gaps = 76/748 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR + + L +++ H YY PI+ D+E+D R + + P+ P Sbjct: 12 EARDKHAILAEQVEEHRFRYYVKDAPIVSDAEFD---RLLRELEALEEEYTELRTPDSPT 68 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G +V H LSL+ ++ E+L + RI R + D+ F E K+D Sbjct: 69 QKVAGAYETEFTEVEHRERMLSLDNAFDGEELAAWAERIVR---ELGDSGYHFLCELKVD 125 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE+G+ AA RGDG +GED++ +R I IP R+ IPE++EVRGEVY Sbjct: 126 GLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTISVIPDRLKGDRIPELVEVRGEVYFP 185 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 F LN ++ G+ P+ANPRNAA+G LR+ +P +R L VHG+G Sbjct: 186 GARFEELNARLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLRMVVHGIGAREGFDIDR 245 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q + + + G P + ++ + ++YY + K R +L ++IDG+V K+DE Sbjct: 246 QSQAYELLHEWGLPTAAHFKVVDSLDAVSEYIAYYGDPKR-RHSLEHEIDGVVVKLDEIP 304 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +R+PRW I+ KF ++ +T+L+DI + +GRTG +TP A +EPV + G+ + Sbjct: 305 LQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPFAVVEPVTVAGSEVEF 364 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+D +K + + +GD V++++AG+VIP++V +V+ R + F Sbjct: 365 ATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSEREFVM 413 Query: 431 PSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + L P K G + RC C AQ ER+ + R +IE G Sbjct: 414 PAECPECGT----PLQPMKEGDV--DLRCPNARYCRAQIRERVYYLAGRKCLDIENFGYV 467 Query: 490 QLDFFFKSEDPA-FSIRIPADIFTL--------------------QRRQQTSTTKI---- 524 + DPA ++ D+F L +R +T K+ Sbjct: 468 AAGALTQPLDPAEPPLKDEGDLFDLKVEQLLPITSYVLDPDSGLPKRDPKTGEEKVVTFF 527 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 N G + + D+I + L R I L IRHVG A +LA+ + S A+ Sbjct: 528 ANQKGEPKKNTLAMLDNIEAAKQRPLARIITGLSIRHVGPVAAAALAREFRSLDRIAEAS 587 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE------ALLKEVSPSIGR 638 +A VG IA ++ +++ + VE LL+E +P Sbjct: 588 EEELAAVEG----------VGPTIAASVKQWFAEDWHREIVEKWRRAGVLLEEEAP---- 633 Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 E +E +V TGTLQ R A+E + GA V+ +S+KTD ++VGDNPGSK Sbjct: 634 -EDEGPRPLEGLTVVVTGTLQTHTRDGAKEALQNRGAKVAGSVSKKTDFVVVGDNPGSKY 692 Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 +KA QL V +++E+ F LL+Q R Sbjct: 693 DKAMQLKVPVLDEDGFTVLLEQGPEAAR 720 >gi|27904570|ref|NP_777696.1| DNA ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|32129495|sp|Q89B02|DNLJ_BUCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|27903967|gb|AAO26801.1| DNA ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 672 Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 232/711 (32%), Positives = 375/711 (52%), Gaps = 63/711 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L+ EI YH Y+ + P I D +YD L + R +D P +G E N Sbjct: 11 LQDEIRYHAYLYHTLNSPKISDEKYDFLVIELQRLEKKCKYSVRFKD--SPTQSVGSE-N 67 Query: 84 LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 L FK +H P LSL ++ D KF +I IFF E K DG I + Sbjct: 68 LPEFKKFSHITPMLSLNNVFIKNDFLKFYKKIV---NNITVEKIFFCSELKFDGVAINLI 124 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR-VLSLNIPEIIEVRGEVYISKNDFLAL 201 Y G A RG+G+ GEDV++ + I ++P+ ++ ++IPE +EVRGE+++ K+DF L Sbjct: 125 YINGLLFRAVTRGNGYEGEDVTSNVNMISSVPKKLIGIDIPETLEVRGEIFMLKSDFKKL 184 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP--TDITRYLNFFVHGLGKTS-EIFAKGQYEML 258 N + +K ++N RNAASG LR N T++ R L F+ +G G S E F + L Sbjct: 185 NVRLTKFKKKLFSNSRNAASGSLRHKNAKVTEL-RSLTFYCYGCGYCSYENFTDSHFLRL 243 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 +K++ GFP+++ +++ I+ +YN +++ R L ++IDG+V KVD LQK L Sbjct: 244 KKLKSWGFPISDYNFLHSSYDEILRFYNFIQNERYFLNFNIDGIVIKVDSICLQKSLSTT 303 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +++PRW +++KF++K T +++I Q+GRTG++TPVA++ P+ I G LI +LHN + Sbjct: 304 SKAPRWAVAYKFSDKIKITTIMNILYQVGRTGVITPVAQVTPIYISGVLIKKVSLHNFNE 363 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I+ L ++ +GD V +KR+G+VIP ++++ + + S P FCP C Sbjct: 364 IRRL-----------NLNIGDSVFIKRSGDVIPHIIEVASKCKLQRNEDISIPKFCPECG 412 Query: 439 SRVVRD--LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 S++ D N K RC GL C +Q + L +F S+ NI GLG + +D K Sbjct: 413 SKLKVDSFSNIKI-------RCMAGLKCLSQFKKLLHYFCSKKGLNILGLGPKIID---K 462 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 D + + +DIF L + TK+ENI G + N+ SIN +N+S +F+ S Sbjct: 463 LVDLGY-VSDLSDIFDL---NVSLLTKVENI---GIIKSQNIIRSINNSKNVSFSKFLCS 515 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI VG+ +ARS++ Y+ + F N + + +G IA + F Sbjct: 516 LGIFEVGSIVARSISNYFFTLDKFM----------NSSKEEFLLINGIGVNIADNLYNFI 565 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN------KKLVFTGTLQKIQRHKAQEYV 670 + N + L K+++ S ++++ I+N KK+VF+G+ R K E Sbjct: 566 NDEFNKNIIFKLSKKLNIS-----SDINAIIDNNNTLFRKKIVFSGSFSNFSRSKIIELS 620 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 +LG +V + +S+ D II+G PG KL KA++ + + E++FL ++ Y Sbjct: 621 KKLGIIVVSSVSKSVDYIIIGKKPGRKLIKAKKFSIPGIYEKEFLNIINVY 671 >gi|21910027|ref|NP_664295.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS315] gi|28896275|ref|NP_802625.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes SSI-1] gi|81759290|sp|Q8K831|DNLJ_STRP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21904217|gb|AAM79098.1| putative DNA ligase [Streptococcus pyogenes MGAS315] gi|28811526|dbj|BAC64458.1| putative DNA ligase [Streptococcus pyogenes SSI-1] Length = 652 Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 220/696 (31%), Positives = 365/696 (52%), Gaps = 56/696 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL+ L Y YY P + DS+YD L R + ++P+ + P ++ Sbjct: 6 KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ K + + + E KIDG Sbjct: 60 GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G A RGDG+ GE+++ I+ I IP LS P I VRGE Y+S+ F Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 A+N+ G +ANPRNAA+G LR+L+ + R L F++ + S Q E+ Sbjct: 173 KAINEGRQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLYQ--EVSPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ + P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKED------FMQLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + Y +I+ ++ ++ + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L V+ + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647 >gi|226356158|ref|YP_002785898.1| DNA ligase (NAD(+)) [Deinococcus deserti VCD115] gi|254778151|sp|C1CVC7|DNLJ2_DEIDV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|226318148|gb|ACO46144.1| putative DNA ligase (NAD(+)) [Deinococcus deserti VCD115] Length = 686 Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 225/708 (31%), Positives = 361/708 (50%), Gaps = 52/708 (7%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 +L E++ H+ YY+ P I D EYDAL R + P+ ED + P+ IGG Sbjct: 15 ALRAEVARHNRAYYEQDAPEISDDEYDALARALRDMEARHPEWV--ED-DSPVQTIGGAP 71 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGTMITI 141 + + V H P SL+ +++ ++LR++ ++ R ++ F FT E KIDG + + Sbjct: 72 SAAFEPVAHLTPMTSLDNVFDADELREWQEKLARSLNLPPESDDFTFTGEIKIDGLSVNL 131 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 Y G +AA RG+G GE V+A + IP IP+ L + +EVRGEVY+S+ DF A Sbjct: 132 YYLDGTLQWAATRGNGRVGEMVTAQVLTIPGIPQHLD-GLKGQLEVRGEVYLSRADFAAF 190 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 N + +G NPRN A+G LR+ +P TR L + LG+ + A+ Q E+LQ Sbjct: 191 NAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRNLKAIFYSLGRRDGVEARTQSEVLQW 250 Query: 261 MRCLGFPVNNGVRQANTFHGIVS---YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 + GFPV++ + TF G V+ Y+ M RS +D DG V K+D +LQ++ G Sbjct: 251 LAGRGFPVSH---YSETFRGYVAAADYHRRMTEARSNFEFDADGTVIKLDPLALQEEAGF 307 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PRW I+ KF +Q T L I + +GRTG L P+A L P I G+ ++ ATLHNED Sbjct: 308 TSRAPRWAIAFKFPVEQVETVLESITVNVGRTGKLAPLAHLAPRLIEGSTVSKATLHNED 367 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI+ + D+RVGD V+V+++G VIP+++ ++ +R PF FP++CP C Sbjct: 368 YIRQM-----------DLRVGDTVVVRKSGGVIPQIMRVVTEKRPEKTTPFVFPTYCPEC 416 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 V R A+ AC AQ+ ER+++FVSR A ++ G+G++ + ++ Sbjct: 417 GHEVTRAEGD-------ANTYCPNPACPAQRFERIRYFVSRGAMDVRGIGEKLVIQVIET 469 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 +R AD++ L Q + + G+ N+ + + L R I +L Sbjct: 470 ----GLVRDAADLYLLTAEQ------LAGLERGGEKKAQNVLAQLEASKTRPLWRLINAL 519 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G+ HVG A++LA+ + S + I VP +G + A ++ Sbjct: 520 GMTHVGERNAQALARAFGSLDALLRATPEQIEA----------VPGMGKVTAVSVSAALA 569 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 +P +E L+ S + ++ V TG+L + R + + + GA V Sbjct: 570 DPTMRNLIER-LRAAGMSPEETQTVRGEQLAGLNFVITGSLSQ-PRDELKALLEAAGARV 627 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 + ++RKT +I G + GSKL++A++L V +++E LL Q L Sbjct: 628 TGSVTRKTSYLIAGQDAGSKLDRARELAVPVLDEAALGTLLHQRGVQL 675 >gi|319951546|ref|ZP_08025350.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4] gi|319434794|gb|EFV90110.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4] Length = 726 Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 227/731 (31%), Positives = 366/731 (50%), Gaps = 48/731 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E + L + + H YY PI+ D+E+D L A+ +P L R+ D P Sbjct: 21 RQEWTELAETVRDHQFRYYVKDAPIVSDAEFDRLFGELQALEEKYPAL-RTAD--SPTQL 77 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + V H SL+ +++ E+LR ++ +D + F E KIDG Sbjct: 78 VGGGFSTDFAPVEHLERMTSLDNVFSEEELRDWVASAVEQAGVPEDR-LPFLCEVKIDGV 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 + + Y GK V AA RGDG +GEDV+ R I IP L+ +P ++EVRGEV+ Sbjct: 137 ALDLVYRDGKLVSAATRGDGRTGEDVTLNARTIEDIPVTLTPTPDRPVPSLLEVRGEVFF 196 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 DF LN ++A G+ P+ANPRN+A+G LR+ NP R L + HGLG + Sbjct: 197 RLEDFAELNARLVAEGKAPFANPRNSAAGSLRQKNPAITAQRRLGMYCHGLGAVEGATFE 256 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 +++ + G PV+ A +V RS ++IDGLV K+D+ ++Q Sbjct: 257 SLHDVYLALADWGLPVSPHTAPATGVEEVVERMRYWGEHRSDPEHEIDGLVVKIDDRAVQ 316 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG+ +R+PRW I++K+ ++ T LLDI + +GRTG +TP A +EPV + G+ ++ AT Sbjct: 317 RRLGQTSRAPRWAIAYKYPPEEVMTELLDIRVSVGRTGRVTPFAYMEPVLVAGSTVSLAT 376 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+ +V+R G + +GD V++++AG+VIP+V+ +V R + F FP Sbjct: 377 LHNQT---------EVIRKG--VLIGDTVVIRKAGDVIPEVLGPVVERRDGTEREFVFPE 425 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + + + G A RC +C AQ ERL + SR+A +IE LG + Sbjct: 426 RCPECDTVLA---PAREGD--ADWRCPNQRSCPAQLRERLFYLASRNALDIEALGYEGAS 480 Query: 493 FFFKS-----EDPAFSIRIPADIFTLQ---RRQQTSTTKIENILGFGDVSVTN----LYD 540 S E F + AD+ R ++ + +IE V +T L Sbjct: 481 DLLASGVLENEAGLFDL-TEADLLRTHLYTRIEKATRKQIEEGAEPERVVLTENGRKLLA 539 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ ++ L R + +L IRHVG AR+LA + + + + +A + Sbjct: 540 NLATAKDRPLWRVLVALSIRHVGPTAARALATRFGTMEAIRAASDQELAETDG------- 592 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VG IA ++VE++ + V+ ++++ +E +V TG+L+ Sbjct: 593 ---VGQTIAASVVEWFGVDWHREIVDRWAAAGVSMADERDESIPRTLEGLTIVATGSLEG 649 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R +E + G S +S+KTD ++VGDNPGSK KA++LG+ I++E F+ L++ Sbjct: 650 FTRDGIKEAIIARGGKASGSVSKKTDYVVVGDNPGSKAAKAEELGLTILDEAGFVELMEN 709 Query: 721 YNTTLRIHDDD 731 D D Sbjct: 710 GPAPAGTADPD 720 >gi|225377122|ref|ZP_03754343.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM 16841] gi|225211027|gb|EEG93381.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM 16841] Length = 668 Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 222/707 (31%), Positives = 375/707 (53%), Gaps = 51/707 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + ++ L++ + YH D YY P I D EYD + + + P+L P+ P Sbjct: 6 AEERIAELKKTLEYHIDRYYNQDSPEISDYEYDMMMQELKNLEKEHPELVT---PDSPTQ 62 Query: 77 KIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG V H++P LSL+ +++ E++ F+ + QK+ D+ F +E KID Sbjct: 63 RVGGTAKREAGVLVRHNVPMLSLQDVFSKEEVFNFVEEM----QKQLDHP-EFVVEYKID 117 Query: 136 GTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 G +++RYE G+ + A RGDG + GEDV+A + I + + L + PE +E+RGEVY+ Sbjct: 118 GLSMSLRYENGELILAETRGDGINFGEDVTANAKVIKDVKQKLK-DKPEYLEIRGEVYMK 176 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAK 252 F +N+ +G+K +ANPRN A+G LR+L+ + +T R L+ F+ + + + Sbjct: 177 NAAFEKVNETQELLGKKVFANPRNCAAGTLRQLD-SKVTKERDLSMFIFNIQQVRGMEFA 235 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E + ++ G V + + T + + R L YDIDG V K++ FS + Sbjct: 236 THTEGYEFLKKQGIHVIDDYKVCTTAEEVWDAITAIGENRGNLAYDIDGAVVKINRFSDR 295 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLGE ++ PRW I++K+ ++ +RLL+I++ +GRTG +TP A EPV + G ++ AT Sbjct: 296 EQLGETSKVPRWAIAYKYPPEEKESRLLNIELSVGRTGRITPTAVFEPVRLCGTSVSRAT 355 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+D+I L DI +GD ++V ++GE+IPK+ ++ +R D + F P Sbjct: 356 LHNQDFIDDL-----------DIGIGDTIVVYKSGEIIPKIKEVKKEKRPSDWKRFVIPD 404 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C ++ R+ K A RCT C AQ + +FV RDA +I+G G ++ Sbjct: 405 VCPVCGAKTERE------KDTADIRCTSP-NCPAQLERHIINFVGRDAMDIKGFGTVYIE 457 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + I AD+F L+ + + I+G + + L D+I K + + Sbjct: 458 ELVR----LGYINNVADVFVLKTHRDELID--QGIIG-KEKNTDKLLDAIEKSKENDAYK 510 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + LGI +VG A+++ KY+ + + + ND +G++ A I Sbjct: 511 LLTGLGIPNVGKAAAKAIMKYFKDMDHLKEASVEQLTEVND----------IGEVSALCI 560 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ + +NI ++ LKE ++ E + V S + K +V TGTL + R +A E + Sbjct: 561 RNFFTDEKNIEILDR-LKEYGVNMQAEETETVESVLTGKTVVVTGTLPTLGRKEASELIE 619 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G S +S+KTD ++ G+N GSKL KAQ+LG+ +++EEQ +L Sbjct: 620 KYGGKASGSVSKKTDYVLAGENAGSKLTKAQELGIPVISEEQLKEML 666 >gi|257452731|ref|ZP_05618030.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R] gi|317059272|ref|ZP_07923757.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R] gi|313684948|gb|EFS21783.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R] Length = 676 Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 230/705 (32%), Positives = 367/705 (52%), Gaps = 60/705 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM- 82 L++++ + D YY ++ +I D EYD L + + + + E+ + K+G + Sbjct: 14 LQKKLQRYSDAYYSQNESLISDYEYDMLLKELEQLEKEL----QIENKSSITQKVGSSLK 69 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 N K TH P LSL + I ++ F+ R + D+ + +E K+DG I+I Sbjct: 70 NTKFQKTTHKTPMLSLSNTYEIGEIEDFLLRAKKNLNMTDNLEV--EMEIKLDGLSISII 127 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 YEKGK V A RGDG GEDV+ + I +IP LS IE+RGE+ + ++F LN Sbjct: 128 YEKGKLVRAVTRGDGIVGEDVTENVLQIESIPHELSEAFD--IEIRGEIVLPFSEFENLN 185 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 I G + +ANPRNAASG LR+L+P + R+L + + + + Q E + + Sbjct: 186 KIRIEKGEEVFANPRNAASGTLRQLDPKIVKERHLAAYFYFIVNAEQYGIHSQKESILFL 245 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 L P + N S R LPY+ DGLV K+++ SL ++LG +S Sbjct: 246 EKLSLPTTKICEIFQDSSKLEDRINYWSSEREKLPYETDGLVLKINDISLWEKLGSTGKS 305 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW +++KF KQ +T+LLDI Q+GRTG +TPVA LE V + G+ + A+LHN D Sbjct: 306 PRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVKRASLHNYD---- 361 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +++R +DIR+GD V +++A E+IP+VV + +R + P CPIC+S + Sbjct: 362 -----EIVR--KDIRIGDTVFIEKAAEIIPQVVKAVKEDRTGKEKKIEAPEHCPICESIL 414 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R+ K + H C G + +++FVSRD NI GLG + L+ Sbjct: 415 EREEGLVDLKCINKH-CPGKIQG------EMEYFVSRDGMNISGLGGRILEKLL----SL 463 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + +DI++L+ +++ ++E + G S+ NL SI + + S ++ +++LGI Sbjct: 464 HYLENVSDIYSLKEKRE----ELEQLDKMGKKSIENLLSSIEESKKTSYDKVLYALGIPF 519 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG A+ LAK E NI+ L ++ VG+ +A++IV+F+QN Sbjct: 520 VGKVAAKLLAK----------ESKNILKLQTMTEEELQQIEGVGEKMARSIVDFFQNETK 569 Query: 622 ICAVEALLKEVSPSIGRH-------EKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQL 673 ++ L+ IG E + ++I + K + TGTL K R + QE + + Sbjct: 570 KQLIQNLI-----DIGLCFTLKDGVEASTEAKIWQGKNFLVTGTLSKYTRAELQEDIEKS 624 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFL 717 G + +++K D +IVG+ GSKLEKA+ LG V I+ EE+FL L Sbjct: 625 GGTNLSSVTKKLDYLIVGEKAGSKLEKAKALGSVTILTEEEFLAL 669 >gi|167756540|ref|ZP_02428667.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402] gi|167702715|gb|EDS17294.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402] Length = 664 Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 231/705 (32%), Positives = 369/705 (52%), Gaps = 59/705 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L+ I YH+D YY P I D EYD + + + P+ S+ P K+GG Sbjct: 10 LKATILYHNDRYYNQDNPEITDYEYDMMMQELKGLEQKHPEYITSDSPT---QKVGGSAK 66 Query: 84 LSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 V H++P LSL+ +++ ED+ F+ + Q D F +E KIDG + +R Sbjct: 67 REAGVLVRHNVPMLSLQDVFSKEDVDAFVADMQE--QLVDPT---FVVEYKIDGLSMALR 121 Query: 143 YEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 Y GK A RGDG GEDV+ + I + L I E +EVRGEVY++ F + Sbjct: 122 YVNGKLDVAVTRGDGVLQGEDVTVNAKVIKDVKNTLKEPI-EYLEVRGEVYMTNEAFDKV 180 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL--GKTSEIFAKGQ-YE 256 N+ G+K +ANPRN A+G LR+L+ + IT R L+ FV + K E + + YE Sbjct: 181 NEIQEIKGKKLFANPRNCAAGTLRQLDSS-ITKERNLSMFVFNIQDAKGREFISHSEGYE 239 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L++ G + + T + + R L YDIDG V K+D F+ +++LG Sbjct: 240 YLKRQ---GIKIIEDYKICKTAKEVWEAIEAIGENRDKLGYDIDGAVVKIDSFADRQKLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ PRW +++K+ ++ T+LL I++ +GRTG +TP A EP+ + G ++ ATLHN+ Sbjct: 297 ATAKVPRWAVAYKYPPEEKETKLLAIELSVGRTGRITPTAIFEPIRLCGTTVSRATLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I L D+R+GD ++V ++GE+IPKV ++ +R D+ P+ + CP+ Sbjct: 357 DFIDDL-----------DVRIGDTIVVYKSGEIIPKVKGVVKEKRPADSAPYVIGNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VR+ + A +CT +C ++ + + +FV RDA +I+G G ++ Sbjct: 406 CGAPAVREGDN------ADIKCTNH-SCPSKLVRNIVNFVGRDAMDIKGFGFAYVETLV- 457 Query: 497 SEDPAFSIRIPADIFTL-QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 D + ++ +DI+ L +RQ+ KI ++ S NL ++I +N + + Sbjct: 458 --DHGY-LKDLSDIYGLIDKRQELLDKKIIGLVK----STDNLLNAIEGSKNNDAIKLLT 510 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 SLGI +VG A+SL K + S N + + LI V +GDI A AI+ + Sbjct: 511 SLGISNVGKSAAKSLMKKFKSIDNLMKA----------SYAQLIEVNDIGDISAMAIINY 560 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++NP N V+ LKE ++ E E + K V TGTL + R A E + + G Sbjct: 561 FKNPDNQAVVQR-LKEYGVNMNIIEAQDGDERFDGKTFVVTGTLPTLSRKAASELIEKHG 619 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 VS +S+KTD ++ G+N GSKL KAQ LG+ +++EE L +++ Sbjct: 620 GKVSGSVSKKTDYLLAGENAGSKLTKAQNLGINVISEETLLEMVK 664 >gi|297559142|ref|YP_003678116.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843590|gb|ADH65610.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 775 Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 234/748 (31%), Positives = 380/748 (50%), Gaps = 84/748 (11%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 ++ R + L QE+ H YY P+I D+EYD L R I ++P LA + P Sbjct: 12 DEVRARHTELCQELDDHSYRYY-LGTPVISDAEYDTLMRELVGIEDSYPALATQDSPT-- 68 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTLE 131 K+G +++ V H + SL +++++L W + + + E Sbjct: 69 -QKVGAPISVDFAAVEHLVRMESLGNAFDVDELNA--------WADRASAEVPVNGYLCE 119 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVR 188 KIDG + + YEKG+ V AA RGDG GED++ +R I +P L ++ PE++EVR Sbjct: 120 LKIDGLAVDLVYEKGRLVRAATRGDGRVGEDITLNVRTIGVVPERLDESVRPAPELLEVR 179 Query: 189 GEVYISKNDFLALNDEMIAVGR-KPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKT 246 GEV++ DF LN+ + A G P+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 180 GEVFLPVEDFGKLNERITASGEHTPFANPRNAAAGSLRQKDPRVTATRPLSMIVHGVGAY 239 Query: 247 S-------EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 S E+ Q + + + G P+++ R T + Y + R Y+I Sbjct: 240 SPAKDGGGEVAFTSQSQAYRLLGEWGLPLSDRYRVVTTMDEVREYVAHYAAHRHEPAYEI 299 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KVD+F+LQ++LG +R PRW I++K+ ++ +TRLLDI + +GRTG +TP +E Sbjct: 300 DGIVIKVDDFALQRRLGSTSRVPRWAIAYKYPPEEVTTRLLDIKVGVGRTGRVTPYGVME 359 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G+ + ATLHN + +V R G + +GD V++++AG+VIP++V +++ Sbjct: 360 PVVVAGSEVEFATLHN---------AREVERKG--VLIGDTVVLRKAGDVIPEIVAPVLD 408 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R + F+ P CP C + + + K G + RC +C Q ERL SR Sbjct: 409 RRDGTERAFAMPESCPECGTTLGQQ---KEGDV--DLRCPNARSCPGQLRERLFFVASRK 463 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFS-IRIPADIFTL--------------------QRRQQ 518 A +IE LG + +PA +R D+F L + + Sbjct: 464 ALDIEALGYVAATALTQPLEPARPPVRDEGDLFDLTVDMLLPIRTHVLDPDTTEPKTDPK 523 Query: 519 TSTTKI----ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 T K+ N G +V L++ + + ++ L R + +L IRHVG A LA+++ Sbjct: 524 TGEPKVVSFFANKKGEPKKTVEKLFEQLEEAKSKPLWRVLVALSIRHVGPRAAEDLARHF 583 Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 S ++ I A + ++ L V VG IA +I E++ + E + K Sbjct: 584 RS-------MDAIRAASEEE---LAAVDGVGPTIAASIREWFSVDWH---AEIVRKWADA 630 Query: 635 SIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + +++ S +E +V TG+L+ R A+E + + G +A +S+KT ++VG Sbjct: 631 GVRMEDEDDGSRPRHLEGVTVVVTGSLEGFSRDGAKEAIAERGGRATASVSKKTGFVVVG 690 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 D+PGSK +KA +LGV +++EE F LL+ Sbjct: 691 DSPGSKYDKAVKLGVPVLDEEGFRVLLE 718 >gi|256785054|ref|ZP_05523485.1| NAD-dependent DNA ligase LigA [Streptomyces lividans TK24] gi|289768947|ref|ZP_06528325.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24] gi|289699146|gb|EFD66575.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24] Length = 735 Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 233/744 (31%), Positives = 372/744 (50%), Gaps = 80/744 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR+ + L ++I H YY P++ D+E+D L R + + P+L P P Sbjct: 19 EARERHAQLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEELEERHPEL---RTPESPT 75 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G V H LSL+ +N ++L + RI R + + F E K+D Sbjct: 76 QKVAGAYATEFTAVQHPTRMLSLDNTFNDDELAAWFERIAR---ELGEQEYHFLCELKVD 132 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE+G+ V AA RGDG +GED++ +R I IP R+ +P+++E+RGEVY Sbjct: 133 GLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVPDLVEIRGEVYFP 192 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 F LN + G KP+AN RNAA+G LR+ +P +R L+ VHG+G T E ++ G Sbjct: 193 MEKFQELNARLNEAGDKPFANARNAAAGSLRQKDPRVTASRPLHMVVHGIG-TLEGYS-G 250 Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Q ++ G P + R + G+ ++YY E R ++ ++IDG+V KVD Sbjct: 251 LTRLSQAYDLLKAWGLPTSPHNRVVDGLDGVREFIAYYGEN---RHSVAHEIDGVVVKVD 307 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E LQ +LG AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ Sbjct: 308 EIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSE 367 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHN++ +K + + +GD V++++AG+VIP+++ + + R + Sbjct: 368 VEFATLHNQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSERE 416 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P+ CP C + + K G + RC AC AQ ER+ + R+ +IE G Sbjct: 417 FVMPAECPECGTPL---KAMKEGDI--DLRCPNARACPAQLRERVAYLAGRECLDIEHFG 471 Query: 488 KQQLDFFFKSEDPAFSIRI-PADIFTL--------------------QRRQQTSTTKIEN 526 +P+ + D+F L +R +T KI Sbjct: 472 GVVAAALTGPLEPSEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKIAT 531 Query: 527 IL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 + G + L I + + L RFI L IR+VG A++LA+ + S Q Sbjct: 532 VFANKEGEPKKNTLALLQHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQ 591 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY------QNPRNICAVEALLKEVSPSI 636 +A + VG IA A+ E++ + R A L++ S Sbjct: 592 ATEEELASTDG----------VGGTIATAVKEWFAVDWHREIVRKWKAAGVPLEDRSTG- 640 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 E +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGS Sbjct: 641 ---EDEGPRPLEGLTVVVTGTLENFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGS 697 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQ 720 K +KA QL V ++NE+ F LL+Q Sbjct: 698 KYDKAMQLKVPVLNEDGFAVLLEQ 721 >gi|325125239|gb|ADY84569.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 671 Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 222/718 (30%), Positives = 386/718 (53%), Gaps = 55/718 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S+E+A++E+ L ++ YY+ P++ D YD R + A+ +L ++ Sbjct: 2 AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYSELKSADS 61 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 ++GGE+N L KV H +P LS+ +++ E+L +F R+ QK + + + + Sbjct: 62 IT---QRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRV----QKAIGHPVAYNV 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YE+G A+ RG+G GEDV+ ++ I +P+ L I EVRGE Sbjct: 115 ELKIDGLSLSLEYEEGCLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTSE 248 Y+SK F LN E G +ANPRNAA+G LR+L+P R L+ F++ + + Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAG 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 I Q++ + +M LGF N R+ + Y +E R +LPY IDG+V KVD+ Sbjct: 233 I--DSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDD 290 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G+ + Sbjct: 291 LALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTV 350 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN D + L D+R+GD V + +AG++IP++ ++++++R D+ P+ Sbjct: 351 ARASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPY 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V L+ + A RC +C AQ E + HF SR A NI GLG Sbjct: 400 EVPTKCPSCGEDLVH-LDEEV-----ALRCINP-SCPAQVEEGITHFASRQAMNIAGLGP 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + ++D ++ AD++ L + + + F + S+ NL +I++ R Sbjct: 453 KIVKQLI-AKDLVHNV---ADLYYL------TADDLSQLDHFKEKSINNLLVAIDQSRKN 502 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI +VG + A+ +A+ ++N ++ IA + L+ I +G I Sbjct: 503 SVELVLFGLGIDNVGGKAAQLIAR---KFKNMSK-----IASASVQELTAIDT--IGMTI 552 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++Q P + A L+E + +G + + + K +V TG L R + Sbjct: 553 AESLTAYFQ-PEEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAE 611 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + + LGA V+ +S+KTD ++ G++ GSKL KA+ L + + E + + +++ +T Sbjct: 612 FTKKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669 >gi|309804542|ref|ZP_07698607.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c] gi|309809394|ref|ZP_07703256.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D] gi|312873385|ref|ZP_07733436.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d] gi|308165934|gb|EFO68152.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c] gi|308170305|gb|EFO72336.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D] gi|311091069|gb|EFQ49462.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d] Length = 672 Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 228/717 (31%), Positives = 379/717 (52%), Gaps = 69/717 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L DP Sbjct: 4 LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG L KV H P LS+ +++ ++L +F RI QK + + + +E Sbjct: 61 DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVRGE Sbjct: 117 LKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G +ANPRNAA+G LR+L+ ++T R L+ F++ E Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G +++ Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C +V K A RC + C AQ E + HF SR A NI GLG + Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454 Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 QL D AD++ L S ++ + F D S+ NL ++I + Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+E +F LGI HVGA+ AR +A+ + ++N I + D L+++ +G Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAQKF-------HDLNTIRECSIAD---LMQIDTIGQ 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658 IA+++V++++ +V+ L+ ++ + +G + + + K +V TG L Sbjct: 552 TIAESMVKYFEQQ----SVKELMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVI 664 >gi|289704853|ref|ZP_06501270.1| DNA ligase (NAD(+)) [Micrococcus luteus SK58] gi|289558349|gb|EFD51623.1| DNA ligase (NAD(+)) [Micrococcus luteus SK58] Length = 797 Score = 343 bits (880), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 245/795 (30%), Positives = 374/795 (47%), Gaps = 113/795 (14%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R E L + + YYQ P I D+EYDAL RR + + P+L ++ P + Sbjct: 22 RAEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELVSNDSPT---QE 78 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDG 136 +GGE++ + V H SLE +++IE+L + R + Q + + + +E KIDG Sbjct: 79 VGGEVSEAFAPVRHGARMYSLEDVFSIEELEVWFRRAAQALTQVRPGVAPRWLVEVKIDG 138 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISK 195 + +RY G+ V AA RGDG +GEDV+A +R I IP LS P EVRGEV++S Sbjct: 139 LAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAEFEVRGEVFMSS 198 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 F LN G+ P+ANPRNAA+G LR+ +P R L FVHG+G + Q Sbjct: 199 AAFAELNARRAEEGQTPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGIGSVEAFGLESQ 258 Query: 255 YEMLQKMRCLGFPVNNGVRQAN-----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 +E+ + G PV+ R+ +V+ E R L ++IDG+V K D F Sbjct: 259 HEVYDALAGWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHEIDGIVLKADAF 318 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+ LG +R PRW +++K+ ++ T L DI + +GRTG +TP A +EPV + G+ ++ Sbjct: 319 ADQRYLGHTSRVPRWAVAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVMEPVTVAGSTVS 378 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP------ 423 ATLHN+D +K + + +GD V+V++AG+VIP+VV ++ R Sbjct: 379 LATLHNQDVVK-----------AKGVLIGDTVVVRKAGDVIPEVVGPVLPLREKAIEAGR 427 Query: 424 DAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + + F P+ CP C + L P K G + RC +C AQ R++H SR AF+ Sbjct: 428 ELREFVMPTHCPSCGT----PLAPAKEGDV--DLRCPNARSCPAQLAGRVEHLASRGAFD 481 Query: 483 IEGLGKQQLDFFFK--SEDPA-----------FSIRIPADIFTLQRRQQTSTTKIENILG 529 +E LG++ + + EDPA I A IF L ++ E I G Sbjct: 482 VEALGEEAARWLVQGPGEDPAEHEGQVRPEGPGPITAEAQIFDL------ASGTPEEITG 535 Query: 530 -FGDVSVTNLYDSINKRR-----------------NISLERFIFSLG------------- 558 G+ +T+L S+ + R +L+ + F+ G Sbjct: 536 PRGEDGLTDLQRSLGEVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPTANTL 595 Query: 559 ----------------------IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 IRHVG ARSLA + S A D Sbjct: 596 RLFDELEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMA------ALRAAAEAGDRD 649 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 L + VG IIA A++E++ + V+ +++ +E +V TG Sbjct: 650 RLAEIDGVGPIIADALIEWFAEDWHREIVDRWAAAGVVMEDEQDESTPRTLEGLTVVVTG 709 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+ R A+E + G S +S+KTD ++ G+ GSKL+KAQ LGV +++E F Sbjct: 710 SLEGFSRDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLDEAGFTA 769 Query: 717 LLQQYNTTLRIHDDD 731 LL +R D D Sbjct: 770 LLAGGADAVRPADTD 784 >gi|21223850|ref|NP_629629.1| NAD-dependent DNA ligase LigA [Streptomyces coelicolor A3(2)] gi|7674017|sp|Q9Z585|DNLJ1_STRCO RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|4467245|emb|CAB37570.1| putative DNA ligase [Streptomyces coelicolor A3(2)] Length = 735 Score = 343 bits (880), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 233/744 (31%), Positives = 372/744 (50%), Gaps = 80/744 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR+ + L ++I H YY P++ D+E+D L R + + P+L P P Sbjct: 19 EARERHAQLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEELEERHPEL---RTPESPT 75 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G V H LSL+ +N ++L + RI R + + F E K+D Sbjct: 76 QKVAGAYATEFTAVQHPTRMLSLDNTFNDDELAAWFERIAR---ELGEQEYHFLCELKVD 132 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE+G+ V AA RGDG +GED++ +R I IP R+ +P+++E+RGEVY Sbjct: 133 GLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVPDLVEIRGEVYFP 192 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 F LN + G KP+AN RNAA+G LR+ +P +R L+ VHG+G T E ++ G Sbjct: 193 MEKFQELNARLNEAGDKPFANARNAAAGSLRQKDPRVTASRPLHMVVHGIG-TLEGYS-G 250 Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Q ++ G P + R + G+ ++YY E R ++ ++IDG+V KVD Sbjct: 251 LTRLSQAYDLLKAWGLPTSPHNRVVDGLDGVREFIAYYGEN---RHSVAHEIDGVVVKVD 307 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E LQ +LG AR+PRW I++K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ Sbjct: 308 EIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSE 367 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHN++ +K + + +GD V++++AG+VIP+++ + + R + Sbjct: 368 VEFATLHNQEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSERE 416 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P+ CP C + + K G + RC AC AQ ER+ + R+ +IE G Sbjct: 417 FVMPAECPECGTPL---KAMKEGDI--DLRCPNARACPAQLRERVAYLAGRECLDIEHFG 471 Query: 488 KQQLDFFFKSEDPAFSIRI-PADIFTL--------------------QRRQQTSTTKIEN 526 +P+ + D+F L +R +T KI Sbjct: 472 GVVAAALTGPLEPSEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKIAT 531 Query: 527 IL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 + G + L I + + L RFI L IR+VG A++LA+ + S Q Sbjct: 532 VFANKEGEPKKNTLALLQHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQ 591 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY------QNPRNICAVEALLKEVSPSI 636 +A + VG IA A+ E++ + R A L++ S Sbjct: 592 ATEEELASTDG----------VGGAIATAVKEWFAVDWHREIVRKWKAAGVPLEDRSTG- 640 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 E +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGS Sbjct: 641 ---EDEGPRPLEGLTVVVTGTLENFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGS 697 Query: 697 KLEKAQQLGVKIMNEEQFLFLLQQ 720 K +KA QL V ++NE+ F LL+Q Sbjct: 698 KYDKAMQLKVPVLNEDGFAVLLEQ 721 >gi|119717662|ref|YP_924627.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614] gi|166216220|sp|A1SMA5|DNLJ_NOCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119538323|gb|ABL82940.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614] Length = 752 Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 218/722 (30%), Positives = 371/722 (51%), Gaps = 53/722 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + R+E + +EI YY P I D+++D RR +A+ FP+L P+ Sbjct: 60 VTDPREEHRLIAEEIEEARWRYYVLDSPTIDDADFDRRMRRLEALEEEFPEL---RTPDS 116 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +GG ++ H SL+ +++E++ + R+ R +D ++ L K Sbjct: 117 PTQTVGGAVSTDFTSHPHLRRMESLDNAFSVEEVEAWYARLRR--DGVEDPALLCEL--K 172 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRG 189 +DG I + YE+G+ V A RGDG +GEDV++ ++ I ++P L+ +P ++EVRG Sbjct: 173 VDGLAINLLYEEGRLVRALTRGDGTTGEDVTSNVKTITSVPHRLTGTDEFPVPALVEVRG 232 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248 EV++ F LN+ ++ G+ P+ANPRN+A+G LR+ +P +R L HG+G+ Sbjct: 233 EVFLPVEAFERLNESLLEAGKAPFANPRNSAAGSLRQKDPRITASRALGMVCHGIGERRG 292 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL-PYDIDGLVYKVD 307 + Q + G P ++ VR +T G+ Y + R T+ PY+IDG+V KVD Sbjct: 293 FEPQAQSHAYDALAAWGLPTSDQVRVVSTLKGVEGYIENAGARRHTIVPYEIDGVVVKVD 352 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ++LG +R+PRW I+ K+ ++ + +LL+I + +GRTG +TP A +EP + G+ Sbjct: 353 DVALQRRLGSTSRAPRWAIAFKYPPEEVNAKLLEIRVNVGRTGRVTPYAVMEPTKVAGST 412 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + NATLHN ++ D +R G GD V++++AG+VIP+++ ++ R QP Sbjct: 413 VENATLHNFYEVERKD-----VRPGGPGDPGDTVILRKAGDVIPEILGPVLALRPEGLQP 467 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + P+ CP C + +V K G RC C Q ER+ SR+AF+IEGLG Sbjct: 468 WVPPTTCPSCGTPLVEQ---KEGD--KDRRCPNHEKCPGQLRERVFFVASRNAFDIEGLG 522 Query: 488 KQQLDFFFKSE-----------DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 + +E D A +R P +FT ++ ++ + Sbjct: 523 YEAAVALLDAEVIANEGDVFDLDAAALLRAP--LFTRAPKKDEDGPQL-------SANGQ 573 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 L D+++K + + L R + +L IRHVG + R+LA + S +A Sbjct: 574 RLLDNLDKAKQVPLWRVLVALSIRHVGPKAGRALATEFGSMAAIRAATEEQLAAAEG--- 630 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 VG IA+A++E+++ P ++ V+ + +++ + +V TG Sbjct: 631 -------VGPTIAEAVIEWFKEPWHVEIVDKWERAGVTMADERDESTPRTLAGLTVVVTG 683 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L R A+E + G + +S+KTD ++VG+N GSK +KA+QLGV +++E F Sbjct: 684 SLVDFSRDSAKEAILSRGGKAAGSVSKKTDYVVVGENAGSKADKAEQLGVPVLDEAGFKT 743 Query: 717 LL 718 LL Sbjct: 744 LL 745 >gi|320529157|ref|ZP_08030249.1| DNA ligase, NAD-dependent [Selenomonas artemidis F0399] gi|320138787|gb|EFW30677.1| DNA ligase, NAD-dependent [Selenomonas artemidis F0399] Length = 672 Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 221/710 (31%), Positives = 355/710 (50%), Gaps = 44/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I+ + EL+ L ++I + YY + I D E+D L R AI +P+L N Sbjct: 4 IQAVKAELAELRRQIRRYSKQYYDDNASDISDYEFDQLMLRLKAIEAEYPELITK---NS 60 Query: 74 PLNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P K+GG + V H +P LSL+ +++ ++R F+ I + + F +E Sbjct: 61 PTQKVGGSAQRTAGVLVKHDVPMLSLQDVFSEAEIRDFVAGICAHFPAAE-----FVVEE 115 Query: 133 KIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + +RYE G A RGDG GEDV+ R I + LS + P EVRGEV Sbjct: 116 KIDGLSLALRYENGVLARAVTRGDGIVQGEDVTENARMIADVREQLS-DAPVYFEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+ + F A+N+ +G KP+ANPRN A+G LR+L+ R L+ FV L +T Sbjct: 175 YMERAAFAAVNERQELLGLKPFANPRNCAAGTLRQLDARVTRERRLSMFVFNLQRTEGRT 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 MR G + G R T + + E+ + R +LPYDIDG V KV++FS Sbjct: 235 FASHTASYDFMRAQGIKIIAGYRVCRTADEVWAAIEEIGARRGSLPYDIDGAVVKVNDFS 294 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 + +LG A++PRW I++K+ ++ T L +I++ +GRTG +TP A +PV + G + Sbjct: 295 QRAELGATAKAPRWAIAYKYPPEEKETVLREIELSVGRTGRITPTAVFDPVQLCGTRVER 354 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+DYI GL D+R+GD +LV ++GE+IP+V +++ +R P+ Sbjct: 355 ATLHNQDYIAGL-----------DVRIGDTILVYKSGEIIPRVKGVVLEKRPASTVPYVI 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 CP+C + VR+ + A +C + C AQ + HFVSR A +I+G G Sbjct: 404 GDTCPVCGAPAVREAD------TADMKCQNPV-CPAQVENHILHFVSRTAMDIKGFGTAA 456 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + A + ADI+TL + I+G + +V L D+I + Sbjct: 457 VIALTH----AGYLHDIADIYTLYEHRDELIAS--GIIGR-EKTVDKLLDAIAHSKENPP 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +R + LGI +G A SL + + S A+ D ++ VP +G++ A+ Sbjct: 510 DRLLTGLGIAGIGRAAAISLMQEFPSVDALAEAARG-------DAEKILAVPDMGEVSAR 562 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ EF+ + + +E + + + +E K V TGTL + R + + Sbjct: 563 SLAEFFGSEASRGLLEKFRAAGVNFVSAPRERTGTALEGKSFVITGTLPTLSREECAALI 622 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 T G V +S+KTD ++ G+ GSKL KA+ L + +++E ++++ Sbjct: 623 TAHGGTVKGSVSKKTDYLVAGEAAGSKLAKAESLDIPVLDEAALRRMIEE 672 >gi|325913348|ref|ZP_08175716.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B] gi|325477451|gb|EGC80595.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B] Length = 672 Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 229/717 (31%), Positives = 379/717 (52%), Gaps = 69/717 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L DP Sbjct: 4 LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLL---DP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG L KV H P LS+ +++ ++L +F RI QK + + + +E Sbjct: 61 DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y+ GK V A+ RG+G GEDV+A I IP+ L I IEVRGE Sbjct: 117 LKIDGLSLSLEYKAGKLVRASTRGNGRIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G +ANPRNAA+G LR+L+ ++T R L+ F++ E Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVNPPET 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G +++ Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C +V K A RC + C AQ E + HF SR A NI GLG + Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454 Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 QL D AD++ L S ++ + F D S+ NL ++I + Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+E +F LGI HVGA+ AR +AK + ++N I + D L+++ +G Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAKKF-------HDLNTIRECSIAD---LMQIDTIGQ 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658 IA+++V++++ +V+AL+ ++ + +G + + + K +V TG L Sbjct: 552 TIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVI 664 >gi|237733138|ref|ZP_04563619.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383820|gb|EEO33911.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 664 Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 231/705 (32%), Positives = 369/705 (52%), Gaps = 59/705 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L+ I YH+D YY P I D EYD + + + P+ S+ P K+GG Sbjct: 10 LKATILYHNDRYYNQDNPEITDYEYDMMMQELKGLEQKHPEYITSDSPT---QKVGGSAK 66 Query: 84 LSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 V H++P LSL+ +++ ED+ F+ + Q D F +E KIDG + +R Sbjct: 67 REAGVLVRHNVPMLSLQDVFSKEDVDAFVADMQE--QLVDPT---FVVEYKIDGLSMALR 121 Query: 143 YEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 Y GK A RGDG GEDV+ + I + L I E +EVRGEVY++ F + Sbjct: 122 YVNGKLDVAVTRGDGVLQGEDVTVNAKVIKDVKNTLKEPI-EYLEVRGEVYMTNEAFDKV 180 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL--GKTSEIFAKGQ-YE 256 N+ G+K +ANPRN A+G LR+L+ + IT R L+ FV + K E + + YE Sbjct: 181 NEIQEIKGKKLFANPRNCAAGTLRQLDSS-ITKERNLSMFVFNIQDAKGREFISHSEGYE 239 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L++ G + + T + + R L YDIDG V K+D F+ +++LG Sbjct: 240 YLKRQ---GIKIIEDYKICKTAKEVWEAIEAIGENRDKLGYDIDGAVVKIDSFADRQKLG 296 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ PRW +++K+ ++ T+LL I++ +GRTG +TP A EP+ + G ++ ATLHN+ Sbjct: 297 ATAKVPRWAVAYKYPPEEKETKLLAIELSVGRTGRITPTAIFEPIRLCGTTVSRATLHNQ 356 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I L D+R+GD ++V ++GE+IPKV ++ +R D+ P+ + CP+ Sbjct: 357 DFIDDL-----------DVRIGDTIVVYKSGEIIPKVKGVVKEKRPADSVPYVIGNTCPV 405 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + VR+ + A +CT +C ++ + + +FV RDA +I+G G ++ Sbjct: 406 CGAPAVREGDN------ADIKCTNH-SCPSKLVRNIVNFVGRDAMDIKGFGFAYVETLV- 457 Query: 497 SEDPAFSIRIPADIFTL-QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 D + ++ +DI+ L +RQ+ KI ++ S NL ++I +N + + Sbjct: 458 --DHGY-LKDLSDIYGLIDKRQELLDKKIIGLVK----STDNLLNAIEGSKNNDAIKLLT 510 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 SLGI +VG A+SL K + S N + + LI V +GDI A AI+ + Sbjct: 511 SLGISNVGKSAAKSLMKKFKSIDNLMKA----------SYAQLIEVNDIGDISAMAIINY 560 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLG 674 ++NP N V+ LKE ++ E E + K V TGTL + R A E + + G Sbjct: 561 FKNPDNQAVVQR-LKEYGVNMNIIEAQDGDERFDGKTFVVTGTLPTLSRKAASELIEKHG 619 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 VS +S+KTD ++ G+N GSKL KAQ LG+ +++EE L +++ Sbjct: 620 GKVSGSVSKKTDYLLAGENAGSKLTKAQNLGINVISEETLLEMVK 664 >gi|224437677|ref|ZP_03658624.1| NAD-dependent DNA ligase LigA [Helicobacter cinaedi CCUG 18818] gi|313144124|ref|ZP_07806317.1| DNA ligase [Helicobacter cinaedi CCUG 18818] gi|313129155|gb|EFR46772.1| DNA ligase [Helicobacter cinaedi CCUG 18818] Length = 651 Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 237/697 (34%), Positives = 366/697 (52%), Gaps = 64/697 (9%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 +++YH YY PI DS+YD L + P L PN P ++GG S Sbjct: 15 KMAYH---YYVLDDPIATDSQYDELYHQVLNFERQNPILI---SPNSPTQRVGGTPLESF 68 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 K +H SLE ++N +++++ RIY+ + FT PK DG + + Y G Sbjct: 69 SKNSHIERMWSLEDVFNQAEMQEWCERIYKSYPHSH-----FTCSPKFDGASLNLLYRDG 123 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 V A RGDG GE V++ R I +IP LS++ IE+RGEV I+K+DF +N+E + Sbjct: 124 ILVSATTRGDGIVGELVTSNARTIQSIP--LSIDYKGEIEIRGEVVIAKDDFEKINNERL 181 Query: 207 AVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 +ANPRNAA+G LR+L+ + IT R L F G+G F YE LQK+ Sbjct: 182 EQNLSLFANPRNAAAGSLRQLD-SKITAQRKLRFMPWGIGAGLSQFGSF-YEALQKITDF 239 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 GF + I+ Y + S R P +DG+V +DE +Q++LG ++PR+ Sbjct: 240 GFAPVPFLTHCEGSDDIMQMYKILISKRDDYPIMLDGMVIMLDEIEIQQRLGWTIKAPRF 299 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 + KF + S+++LDI +Q+GRTGI+TPVA LEPV I GA+I ATLHN I+ Sbjct: 300 ACAFKFPAVEKSSKILDITLQVGRTGIITPVAELEPVEIEGAMIARATLHNFSEIE---- 355 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC-QSRVVR 443 +DIR+ D V++ R+G+VIPK++ I R P + P+ CP+C Q ++ Sbjct: 356 -------RKDIRINDEVIIIRSGDVIPKIIKPITALRDGTQIPITKPTHCPVCRQELLIE 408 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 ++ K C L+C A+ +E + HF S+ A NI+GLG++ + F++ Sbjct: 409 EIFIK---------CQ-NLSCEARVIESIIHFASKKALNIDGLGEKIVIQLFENG----L 454 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 I+ DI+ L+ Q + + G+ + NL +I + L RFI +LGI H+G Sbjct: 455 IQSILDIYALEESQLLA------LEGWKEKRAKNLIVAIQNTIGVELWRFINALGIEHIG 508 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 ++ LA+ + F+ + I+ + G+ +A ++VEF N N Sbjct: 509 EGASKRLAQSF-GRDTFSADFQQILGLDG-----------FGEEMAYSLVEF--NHANKE 554 Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 + LL+ +SP I + + + K +V TGTL K R + E + GA +S+ +S+ Sbjct: 555 LIAKLLEIISPKIEQIKLDSGHIFYGKSIVLTGTLNK-PRDEIVEMLESKGAKISSSVSK 613 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 KTD +I G+ GSKLEKAQ LGVK ++EE+F+ +Q+ Sbjct: 614 KTDFVIYGEKAGSKLEKAQNLGVKTLSEEEFMACMQE 650 >gi|315613211|ref|ZP_07888121.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296] gi|315314773|gb|EFU62815.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296] Length = 652 Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 222/686 (32%), Positives = 363/686 (52%), Gaps = 67/686 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+PD ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V A R Sbjct: 76 LYSLQDAFSREELEAFDARV-----RKELPQPTYICELKIDGLSISLTYEKGILVVGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q ++L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLEHLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A + I + E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAESMDEIWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S+++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCDSQLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS---EDPAFSIRIPA 508 A RC C AQ +E L HF SRDA NI GLG ++ F + +D A R+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAANLVKDVADIYRLKE 465 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D F L + G + S + LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 466 DDFLL-------------LEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP-RNICAVEA 627 L +++ S +N AQ D + + +G +IAQ++ ++ NI E Sbjct: 513 LLLQHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFATEGSNILLDE- 561 Query: 628 LLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 LKE ++ + V ++ + +V TG L+++ R +A+ + LGA V+ +S+KT Sbjct: 562 -LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKVTGSVSKKT 620 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNE 711 ++++ G + GSKL+KAQ+LG+++ +E Sbjct: 621 NLVVAGADAGSKLQKAQELGIEVRDE 646 >gi|270292770|ref|ZP_06198981.1| DNA ligase, NAD-dependent [Streptococcus sp. M143] gi|270278749|gb|EFA24595.1| DNA ligase, NAD-dependent [Streptococcus sp. M143] Length = 652 Score = 343 bits (879), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 221/685 (32%), Positives = 367/685 (53%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+PD ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V A R Sbjct: 76 LYSLQDAFSREELEAFDARV-----RKELPHPTYICELKIDGLSISLTYEKGILVAGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE ++ VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEKLDITVRGECYMPRASFDLVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q ++L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S+++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCDSQLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 L K E+ L G + S + LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RL---------KEEDFLLLEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +++ S +N AQ D + + +G +IA+++ F+ + ++ Sbjct: 513 LLLQHFHSIENLAQA----------DPEEVASIESLGSVIAKSLQTFFATEGSKILLDE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++ G + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646 >gi|307708748|ref|ZP_07645210.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261] gi|307615114|gb|EFN94325.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261] Length = 652 Score = 343 bits (879), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 221/685 (32%), Positives = 363/685 (52%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+PD ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V A R Sbjct: 76 LYSLQDAFSREELEAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVVGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ S Q ++L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASLST--RDSQEKVLKHLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRISE-EKLDIPTNCPSCNSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSVVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S + LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RLQE---------EDFLLLEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +++ S +N AQ D + + +G +IA+++ ++ + + Sbjct: 513 LLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFATEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++ G + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646 >gi|256390514|ref|YP_003112078.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928] gi|256356740|gb|ACU70237.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928] Length = 723 Score = 343 bits (879), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 226/728 (31%), Positives = 355/728 (48%), Gaps = 65/728 (8%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 ++L +EI YY P I D+++D R+ +AI A P+L P+ P K+ G Sbjct: 14 AALAEEIENARYRYYVLDAPTISDADFDVKLRQLEAIEDANPEL---RTPDSPTQKVAGA 70 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL-EPKIDGTMIT 140 V H LSL+ + E+L+ + RI +KD ++ L E K+DG I Sbjct: 71 YETEFTSVPHLERMLSLDNAFTAEELQTWADRI-----EKDLGALPELLCELKVDGLAIN 125 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYISKN 196 + YEKGK A RGDG +GED++ + I TIP+ L+ +PE++EVRGEVY + Sbjct: 126 LLYEKGKLTRALTRGDGRTGEDITPNAKTIQTIPQTLTGTDEFPVPELVEVRGEVYFAVQ 185 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255 F N++++A + YAN RNAA+G LR+ +P R L+ VHG+G Q Sbjct: 186 AFDEWNEKILAETGRSYANARNAAAGSLRQKDPRVTAQRPLSMVVHGIGARKGFTPTSQS 245 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + +R G P ++ V+ T + Y + R + ++IDG+V KVD +Q +L Sbjct: 246 HSYEALRAWGLPTSDRVKVVKTLKDVQKYIDYYNKHRHDVEHEIDGVVVKVDALPIQGRL 305 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I+ K+ ++ +T+LLDI +Q+GRTG +TP A +EPV + G+ + NATLHN Sbjct: 306 GSTSRAPRWAIAFKYPPEEVTTKLLDIRVQVGRTGRVTPYAVMEPVTVAGSTVQNATLHN 365 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 + + V +G + +GD V++++AG+VIP++V + + R + F P CP Sbjct: 366 QAIV--------VKKG---LLIGDTVVLRKAGDVIPEIVGAVQDLRDGSEREFVMPENCP 414 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C +++ K G + RC C Q ER+ SR+A +IE LG + Sbjct: 415 DCGTKLAPQ---KEGDI--DLRCPNSQFCLGQIRERIDFMGSRNALDIEALGYESAVALT 469 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF----GDVSVTNLYDSINKRRNIS-- 549 + + D+ +L+ +++ G G+ + + + + S Sbjct: 470 QPAAGTAPVHDEGDLLSLKLEDLADLKMLQSKRGADAKPGETELVPYFFTKGTPKKPSVP 529 Query: 550 -------------------LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 L RF+ SL IRHVG AR LA+ + S+ A + Sbjct: 530 TATTELLLQQLELVKTDRPLWRFLVSLSIRHVGPTAARVLAREFPSFDALANATEEDLKA 589 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 N +G IA AIVE++ + + + + +E Sbjct: 590 ANG----------IGPTIATAIVEWFAVDWHRAIIGKWQAAGVVPVVESQPEGPRPLEGL 639 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TGTL R A E +T GA VS +S+KT ++VGDNPG+K +KA LGVK+++ Sbjct: 640 SVVVTGTLAGFTRDGAAEELTSRGAKVSGSVSKKTSFVVVGDNPGTKYDKALSLGVKVLD 699 Query: 711 EEQFLFLL 718 EE F LL Sbjct: 700 EEGFKVLL 707 >gi|47169437|pdb|1V9P|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase gi|47169438|pdb|1V9P|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase Length = 584 Score = 343 bits (879), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 207/570 (36%), Positives = 321/570 (56%), Gaps = 47/570 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ E+AR+ ++ L I YH+ YY + P I D+EYD L R + FP+ + P Sbjct: 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEF---KSP 57 Query: 72 NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G F+ V H SL+ + E++ F R+ R +K +T+ Sbjct: 58 DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALGRK--RPFLYTV 115 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G V+ A RGDG GE+V+ + IPTIPR L +P+ +EVRGE Sbjct: 116 EHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLK-GVPDRLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247 VY+ FL LN+E+ G K + NPRNAA+G LR+ +P + F+ GLG Sbjct: 175 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLG-LE 233 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E K QYE+L ++ GFPV +G +A G+ Y + R LP++ DG+V K+D Sbjct: 234 ESGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPFEADGVVVKLD 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +L ++LG AR+PR+ +++KF ++ TRLLD+ Q+GRTG +TPV LEPV I G+ Sbjct: 294 DLALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSE 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ R + +P Sbjct: 354 VSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERP 402 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +P CP C R+V K GK+ HRC L C A++ E ++H+ SR A +IEGLG Sbjct: 403 IRWPETCPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIEGLG 453 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINK 544 ++ ++ + +R AD++ L++ E++LG G+ S NL I + Sbjct: 454 EKLIERLLEK----GLVRDVADLYHLRK---------EDLLGLERMGEKSAQNLLRQIEE 500 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYY 574 ++ LER +++LG+ VG +AR+LA+ + Sbjct: 501 SKHRGLERLLYALGLPGVGEVLARNLARRF 530 >gi|306827641|ref|ZP_07460921.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes ATCC 10782] gi|304430204|gb|EFM33233.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes ATCC 10782] Length = 652 Score = 343 bits (879), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 219/696 (31%), Positives = 365/696 (52%), Gaps = 56/696 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KEL+ L Y YY P + DS+YD L R + ++P+ + P ++ Sbjct: 6 KELTDLLNRYRYD---YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPT---QQV 59 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + K H P SL+ ++ E+L F R+ K + + + E KIDG Sbjct: 60 GGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRV-----KAEFPNATYLAELKIDGLS 114 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ YE G A RGDG+ GE+++ I+ I IP LS P I VRGE Y+S+ F Sbjct: 115 ISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITVRGEAYMSRQSF 172 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 A+N+ G +ANPRNAA+G LR+L+ + + R L F++ + S Q E+ Sbjct: 173 KAINEARQENGETEFANPRNAAAGTLRQLDTSVVAKRQLATFLYQ--EASPTARNQQNEV 230 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L ++ LGF VN + ++ I + +++ R L YDIDG+V KV+ ++Q++LG Sbjct: 231 LAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGF 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G ++ ATLHN D Sbjct: 291 TVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 YI +DIR+GD V+V +AG++IP V+++++++R+ + P CP C Sbjct: 351 YI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-EVMLIPKLCPSC 398 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S +V + A RC L C + L+HF SRDA NI GLG ++ F Sbjct: 399 GSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGLGPAIVEKLF-- 449 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 A + ADI+ L + + G + S L +I ++ S E+ +F L Sbjct: 450 --LAGFVHDVADIYQLTKED------FMQLDGIKEKSADKLLAAIEASKSNSAEKLLFGL 501 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIRH+G++++R + + +I+ ++ ++ + R+ +G IAQ++ ++++ Sbjct: 502 GIRHIGSKVSRLILE-------VCGDISALLTAKEEE---IARIDGLGSTIAQSLTQYFE 551 Query: 618 NPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V+ L V+ + N + + +V TG L ++ R++A++ + LGA Sbjct: 552 QKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAK 611 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ Sbjct: 612 VTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 647 >gi|15900984|ref|NP_345588.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae TIGR4] gi|81531953|sp|Q97QT2|DNLJ_STRPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|14972593|gb|AAK75228.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae TIGR4] Length = 652 Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 76 LYSLQDAFSCEELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG+++++ Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKVSQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N +Q + +A + +G +IA+++ ++ + + Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSISKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646 >gi|306829554|ref|ZP_07462744.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249] gi|304428640|gb|EFM31730.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249] Length = 652 Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 218/685 (31%), Positives = 364/685 (53%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+PD ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V A R Sbjct: 76 LYSLQDAFSREELEAFDARV-----RKELPHPTYICELKIDGLSISLTYEKGILVAGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE ++ VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEKLDITVRGECYMPRASFDLVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q ++L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A + I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAESMDEIWNFIQEVGQEREHLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S+++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCDSQLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS---EDPAFSIRIPA 508 A RC C AQ +E L HF SRDA NI GLG ++ F + +D A R+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAANLVKDVADIYRLKE 465 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D F L + G + S + LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 466 DDFLL-------------LEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +++ + +N AQ D + + +G +IAQ + ++ + ++ Sbjct: 513 LLLQHFHTIENLAQA----------DPEEVASIESLGSVIAQGLQTYFATEGSKILLDE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L+++ R +A+ + LGA V+ +S+KTD Sbjct: 562 LKEAEVNLAYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++ G + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVAGTDAGSKLQKAQELGIEVRDE 646 >gi|332141274|ref|YP_004427012.1| DNA ligase, NAD-dependent [Alteromonas macleodii str. 'Deep ecotype'] gi|327551296|gb|AEA98014.1| DNA ligase, NAD-dependent [Alteromonas macleodii str. 'Deep ecotype'] Length = 517 Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 200/546 (36%), Positives = 307/546 (56%), Gaps = 46/546 (8%) Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFF 239 P+ +EVRGEV++ + F LN+ G K +ANPRNAA+G LR+L+ + IT R L F+ Sbjct: 8 PDRVEVRGEVFMPREGFAKLNEHQKNAGGKVFANPRNAAAGSLRQLD-SKITAKRPLMFY 66 Query: 240 VHGLGKTSE---IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 + LG E L ++ G P+ + A G + YY+ + R LP Sbjct: 67 AYSLGVVQPDNFTLPTTHSERLSQLGKWGLPLCPDIDTAEGGRGCLDYYHHILEKRDNLP 126 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 YDIDG+V+KV+ LQ LG AR+PRW I+ KF ++ T+LLD++ Q+GRTG +TPVA Sbjct: 127 YDIDGVVFKVNRIDLQAALGFVARAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITPVA 186 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 RLEPV +GG ++NATLHN+D I L ++VGD V+++RAG+VIP+VV + Sbjct: 187 RLEPVFVGGVTVSNATLHNQDEITRL-----------GVKVGDTVVIRRAGDVIPQVVSV 235 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 + +R +FPS CP+C S+V + + A RCTGGL C+AQ+ + LKHF Sbjct: 236 VDTKRTGSETDIAFPSQCPVCGSQVEKLEDE------AVARCTGGLICAAQRKQALKHFA 289 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR AF+I+GLG + +D ++ + PAD FTL S + + + S + Sbjct: 290 SRKAFDIDGLGDKLVDQLVDAD----LVHSPADFFTL------SLGDVVGLERMAEKSAS 339 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 L S+ + +L +F+++LGIR VG A +LA ++ + A + Sbjct: 340 KLLSSLEASKQTTLAKFLYALGIREVGEATAANLAAHF----------ETLDAIRDASIE 389 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVF 654 +L+ V VG+I+A I F+ N ++ALLKE P+I + + + + +E K V Sbjct: 390 ALVEVQDVGEIVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDAD-NLPLEGKTCVI 448 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL ++ R A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+L V++ +E + Sbjct: 449 TGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELDVEVWDEAKL 508 Query: 715 LFLLQQ 720 + L + Sbjct: 509 IAFLAE 514 >gi|111658008|ref|ZP_01408712.1| hypothetical protein SpneT_02000805 [Streptococcus pneumoniae TIGR4] Length = 648 Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 15 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 71 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 72 LYSLQDAFSCEELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 126 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 127 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 182 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 183 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 240 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 241 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 300 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 301 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 349 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 350 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 404 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 405 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 457 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG+++++ Sbjct: 458 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKVSQ 508 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N +Q + +A + +G +IA+++ ++ + + Sbjct: 509 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 557 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 558 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSISKKTD 617 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 618 LVVVGADAGSKLQKAQELGIQVRDE 642 >gi|209527955|ref|ZP_03276440.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328] gi|209491614|gb|EDZ91984.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328] Length = 680 Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 225/703 (32%), Positives = 358/703 (50%), Gaps = 58/703 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I Q ++L Q SY YY P + D YD L R + +P+L P+ Sbjct: 13 ISQKLEQLRLTVQRASY---AYYVLDAPTMEDGVYDRLYRELQELETQYPELI---SPDS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDNSIFFTL 130 P ++G + V H+I SLE +N+ +L+ + + RF W +D+N + Sbjct: 67 PTQRVGEKPATQFESVRHNISLYSLENAFNMAELQAWDEKWRRFLGNWAAEDNN---YIC 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRG 189 E KIDG+ I + Y G V A RGDG +GED++ I+ I +IP L L N P ++EVRG Sbjct: 124 ELKIDGSAIALTYHDGILVRGATRGDGVTGEDITQNIKTIRSIPLKLHLDNPPPVVEVRG 183 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E ++ F +N E G +ANPRNAA+G LR+L+ + R+L+FF + L S Sbjct: 184 EAFLYNRIFAEINQERQKNGEPLFANPRNAAAGTLRQLDSRIVAARHLDFFAYTLHLDSP 243 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 ++ L+ + +GF VN + + + Y+N ++ R LPY DG+V K++ Sbjct: 244 NL-HDHWDCLELLPKMGFKVNPNRQLCQSLLEVQQYFNTWETQRRELPYMTDGVVVKLNS 302 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 SLQKQLGE + PRW I+ K+ ++ T+++ + Q+GRTG LTPVA LEP+ + G + Sbjct: 303 LSLQKQLGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGTTV 362 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN+D + L D+ +GD V+V++AGE+IP+VV ++ + R A+ Sbjct: 363 KRATLHNQDRLTEL-----------DLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLV 411 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + P+ CP C VV+ P+ A RC +C A + H+ R A +I G+G+ Sbjct: 412 TMPTHCPECGETVVKT-PPE-----AVTRCINS-SCPAIVRGSIIHWCGRRALDINGIGE 464 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + +++ +R AD++ L Q + + G S + ++I + Sbjct: 465 KLVQQLVETQ----LVRSVADLYHLNMDQLVALER------QGQKSAQKILEAIAASKKQ 514 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 R ++ LGIR+VG A LA+ + S Q+ A + I V +G I Sbjct: 515 PWHRVLYGLGIRYVGEVNAELLAQNFPSCQSLAAASSAQIEG----------VYGIGAEI 564 Query: 609 AQAIVEFYQNPRNICAVEAL----LKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 A ++ +++QNP NI + L L+ S PS + K V TGTL + R Sbjct: 565 ATSVYQWFQNPANISLCDRLEQSGLQLASVPSTALKSTPQAQPFAGKTFVLTGTLPTLTR 624 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +A+ + + G V+ +++K D +++GD PGSKL KAQ LG+ Sbjct: 625 EEAKSIIEKAGGKVTNSVTQKVDYLLLGDKPGSKLAKAQNLGI 667 >gi|332880187|ref|ZP_08447868.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681836|gb|EGJ54752.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 670 Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 225/706 (31%), Positives = 364/706 (51%), Gaps = 50/706 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++++ L E+ H+ YY + P I D E+D + R + A P+ +DP+ P Sbjct: 4 EVKEQIERLRNELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEF---DDPDSPT 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++N +V H P LSL +N +++ F R+ + + E K D Sbjct: 61 RRVGSDLNQEFVQVPHRYPMLSLSNTYNKQEVADFYERVRSGLEGE---PFEICCEMKYD 117 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194 G I++ YE+G+ V A RGDG G+DV+ ++ I IP L+ N PE E+RGE+ + Sbjct: 118 GLSISLTYEQGRLVRAVTRGDGVQGDDVTENVKTIRCIPLRLNGNGYPEEFEIRGEILMP 177 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 F LN E +ANPRNAASG L+ N + R L+ +++ L I G Sbjct: 178 WTSFETLNREREEREEPLFANPRNAASGTLKSKNSAVVAQRKLDAYLYYL-LGEHIPFDG 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 YE LQ R GF ++ G+++ T I + + R LP DG+V KV+ Q+ Sbjct: 237 HYENLQAARSWGFKISGGMKKVTTLQDIYDFIDYWDVERKNLPVATDGIVLKVNSQRQQR 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA ++PV + G ++ ATL Sbjct: 297 ALGYTAKSPRWAIAYKFQAERARTRLNAVTFQVGRTGTVTPVANMDPVQLAGTVVRRATL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS-FPS 432 HN D ++ L D+ +GD V V++ GE+IPK+V + + R P+ P + F + Sbjct: 357 HNADVMEQL-----------DLHIGDMVYVEKGGEIIPKIVGVDADARGPETGPRAEFIT 405 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + +VR G+ AA C AC Q R++H++SR A NI+ LG + +D Sbjct: 406 RCPECGAELVR----YEGE--AAWYCPNDTACPPQIKGRIEHYISRRAMNIDSLGPETVD 459 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +++ IR AD++ +Q +Q I G + S + SI + ER Sbjct: 460 DYYRRG----LIRDVADLYDIQVQQ------INGEDGTREKSAQKIVRSIADSVEVPFER 509 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F+LGIR VG A++LA+++ S A A D ++++ +G +IA+++ Sbjct: 510 VVFALGIRFVGEIAAKALARHFKSMDALAS------ASLED----MLQINGIGVVIAESV 559 Query: 613 VEFYQNPRNICAVEALL-KEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + ++ N N V L K V + E + S ++ + +V +G R + + + Sbjct: 560 IRYFANEANRDLVRRLREKGVRMELSDEELSSHSDKLSGQSIVVSGVFSLHSRDEYKAMI 619 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715 Q G +S KT ++ G N G +KLEKA +LG+ I++EE+FL Sbjct: 620 EQHGGKNVGSISSKTSFVLAGANMGPAKLEKAGKLGIPILSEEEFL 665 >gi|157737313|ref|YP_001489996.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri RM4018] gi|166215390|sp|A8ETQ3|DNLJ_ARCB4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157699167|gb|ABV67327.1| DNA ligase [Arcobacter butzleri RM4018] Length = 648 Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 225/694 (32%), Positives = 375/694 (54%), Gaps = 60/694 (8%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 ++E+ IS+ + YY + PI D EYD L R C A P L+ PN P ++GG + Sbjct: 9 NIEKLISWAN-AYYVFDNPIATDEEYDKLARLCLAYEQENPKLSH---PNSPNKRVGGIV 64 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 K +H S E ++N ++L +I R K + ++ F +PK DG + + Sbjct: 65 LDGFIKASHLSRMWSQEDVFNTQELEDWIKR-----ASKVNTNLEFFCQPKFDGASLNLI 119 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 YE G A RGDG GEDV+ + I +IP L + +IE+RGEV I K DF +N Sbjct: 120 YENGILKQAITRGDGTVGEDVTNNAKTIFSIP--LEIEEKSLIEIRGEVVIKKADFEKIN 177 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQK 260 E G + +ANPRNAA+G LR+L+ ++IT R L F V G+G+ S + K ++++ Sbjct: 178 IERAKNGEQLFANPRNAAAGSLRQLD-SNITAKRKLFFNVWGIGQNS-LEHKKYSQIMEY 235 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + LGF A+ I S Y++ SIR+ +DG+V K+D+ Q++LG + Sbjct: 236 IYSLGFERPQMQTLASNIEEIESLYHKFISIRNDFEMMLDGMVIKIDDIETQEELGYTVK 295 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 PRW ++KF + +T+L I +Q+GRTGI+TPVA +EP I G+ ++ ATLHN D I+ Sbjct: 296 FPRWSCAYKFPAVEKTTKLKAITLQVGRTGIITPVAEVEPTLIDGSTVSRATLHNFDEIE 355 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 L D+++ D V++ ++G++IPK+ + R D S P+ CP C S Sbjct: 356 RL-----------DLKINDEVIIIKSGDIIPKITKVFFERRKGDEITISRPTSCPTCNSE 404 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 V+ + G ++ +C L C ++ + + +F S++ NI+GLG + ++ F +E Sbjct: 405 VLDE-----GTMI---KCQ-NLDCPSRVVNSIIYFASKNCMNIDGLGNKIVEQLF-NEKK 454 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 + I DI++L+ ++++ GF + + NL ++I + L R I +LGI Sbjct: 455 IYDI---LDIYSLKYED------LQDLEGFKEKKINNLLNAIENTKGSELHRVINALGIE 505 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 H+G ++ + F ++ N D+ SLI + G+ +A + +EF + + Sbjct: 506 HIGEVASKQIC------LEFGLDV------INKDYDSLIALDGFGEQMANSFIEFMRVNK 553 Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 N+ VE L+ ++P + ++ + +NK +V TGT+ K R + + + LGA VS+ Sbjct: 554 NL--VEKLISIINPKVEIKKEVSENPFKNKTVVITGTMSK-SRGEIKSMLEDLGAKVSSS 610 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +S+KTD +I G++ GSK +KA +LGVK++ EE+ Sbjct: 611 VSKKTDYVIFGEDAGSKYDKAIELGVKLLTEEEM 644 >gi|116513594|ref|YP_812500.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275636|sp|Q04BW0|DNLJ_LACDB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116092909|gb|ABJ58062.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 671 Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 221/718 (30%), Positives = 386/718 (53%), Gaps = 55/718 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S+E+A++E+ L ++ YY+ P++ D YD R + A+ +L ++ Sbjct: 2 AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYSELKSADS 61 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 ++GGE+N L KV H +P LS+ +++ E+L +F R+ QK + + + + Sbjct: 62 IT---QRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRV----QKAIGHPVAYNV 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YE+G+ A+ RG+G GEDV+ ++ I +P+ L I EVRGE Sbjct: 115 ELKIDGLSLSLEYEEGRLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTSE 248 Y+SK F LN E G +ANPRNAA+G LR+L+P R L+ F++ + + Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAG 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 I Q++ + +M LGF N R+ + Y +E R +LPY IDG+V KVD+ Sbjct: 233 I--DSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDD 290 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G+ + Sbjct: 291 LALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTV 350 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN D + L D+R+GD V + +AG++IP++ ++++++R D+ P+ Sbjct: 351 ARASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPY 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V L+ + A RC +C AQ E + HF SR A NI GLG Sbjct: 400 EVPTKCPSCGEDLVH-LDEEV-----ALRCINP-SCPAQVEEGITHFASRQAMNIAGLGP 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + ++D ++ AD++ L + + + F + S+ NL +I++ R Sbjct: 453 KIVKQLI-AKDLVHNV---ADLYYL------TADDLSQLDHFKEKSINNLLVAIDQSRKN 502 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI +VG + A+ +A+ ++N ++ IA + L+ I +G I Sbjct: 503 SVELVLFGLGIDNVGGKAAQLIAR---KFKNMSK-----IASASVQELTAIDT--IGMTI 552 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++Q + A L+E + +G + + + K +V TG L R + Sbjct: 553 AESLTTYFQQ-EEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAE 611 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + + LGA V+ +S+KTD ++ G++ GSKL KA+ L + + E + + +++ +T Sbjct: 612 FTKKLQALGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669 >gi|300867541|ref|ZP_07112191.1| DNA ligase [Oscillatoria sp. PCC 6506] gi|300334429|emb|CBN57361.1| DNA ligase [Oscillatoria sp. PCC 6506] Length = 690 Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 244/744 (32%), Positives = 368/744 (49%), Gaps = 84/744 (11%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 ++P ++Q RK+L QE SY YY PI+ D YD L R + P+L Sbjct: 1 MMPEVQQRVQQLRKQL----QEASY---AYYVLDTPIMPDEVYDRLYRELQELETQHPEL 53 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK----- 120 E P ++G + V H+IP SLE +NIE+ K+ R WQ+ Sbjct: 54 ISLESPT---QRVGEKPATHFSSVRHNIPLYSLENAFNIEEFIKWEER----WQRGIGTN 106 Query: 121 --------------KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSAC 166 K + E KIDG+ + + YE G V A RGDG +GE+++ Sbjct: 107 EGELATGNTLESSQKTSPVSKYVCELKIDGSALALTYENGILVRGATRGDGVTGEEITQN 166 Query: 167 IRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR 225 ++ I +IP L L + P ++EVRGE ++S F +N E G +ANPRNAA+G LR Sbjct: 167 VKTIRSIPLQLQLEDCPPLVEVRGEAFLSLAVFEEINQEREKSGDSLFANPRNAAAGTLR 226 Query: 226 RLNPTDIT-RYLNFFVHGL---GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281 +L+ + R L+FF + L GK A Q + L+ ++ +GF VN + + Sbjct: 227 QLDSKIVAKRRLDFFAYTLQIPGKEDIEVADTQCKSLELLQQMGFKVNPNRQLCLALDEV 286 Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341 YY R LPY DG+V K+++ LQKQLG + PRW ++ K+ ++A T + Sbjct: 287 REYYQYWDIERRNLPYMTDGVVVKINDLRLQKQLGFTQKFPRWAVALKYPAEEAPTLVES 346 Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401 I + +GRTG LTPVA L+PV + G ++ ATLHN D I L +I +GD V Sbjct: 347 IAVSVGRTGALTPVAELKPVQLAGTTVSRATLHNSDRILSL-----------NIHIGDTV 395 Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461 +V++AGE+IP+VV ++ R AQ F PS CP C VVR+ K A RC Sbjct: 396 IVRKAGEIIPEVVRVLPELRPEGAQSFQMPSCCPECGQPVVRE------KGEAVTRCI-N 448 Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 +C A L HF SRDA +I G+G++ + S + ADI+ L + Sbjct: 449 TSCPAILRGALIHFCSRDAVDINGIGEKLVQQLVDSN----LVHSVADIYDL------TV 498 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 ++ N+ G L +I + R ++ LGIRHVG+ A L + + + A Sbjct: 499 ERLMNLERMGKKLADKLVGAIANSKTQPWSRILYGLGIRHVGSVNAVLLTERFPDVEQLA 558 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPS 635 I V +G IAQ++ +++Q P N +E L LK + S Sbjct: 559 AASAATIEG----------VYGIGPEIAQSVYQWFQVPANQNLIERLKVAGLQLKSEATS 608 Query: 636 IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 KN+ + K V TGTL ++R +A+E + + G V+ +S KT+ ++VG++ G Sbjct: 609 NKVEGKNLL--LAGKVFVITGTLPTLKRDEAKELIQKAGGKVTNSVSAKTNYLVVGEDAG 666 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQ 719 SKLEKAQ+LG+ ++E Q L +++ Sbjct: 667 SKLEKAQELGIVQLSEAQLLEMIK 690 >gi|145295383|ref|YP_001138204.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum R] gi|166215581|sp|A4QDK5|DNLJ_CORGB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|140845303|dbj|BAF54302.1| hypothetical protein [Corynebacterium glutamicum R] Length = 680 Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 229/721 (31%), Positives = 365/721 (50%), Gaps = 72/721 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q R+ + L +++ YH D YY +P I D+++DAL ++ + P+LA P+ P Sbjct: 7 QLRRTWNDLAEKVRYHRDRYYN-EQPEIPDADFDALFKQLQQLEEDHPELAV---PDSPT 62 Query: 76 NKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 +G + S V H LSL+ +++ ++LR ++ R + + E K Sbjct: 63 MVVGAPVAEQSSFDNVEHLERMLSLDNVFDEQELRDWLGRT---------PAKQYLTELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRG 189 IDG I + Y G+ AA RGDG GED++A R I IP L +P ++E+RG Sbjct: 114 IDGLSIDLVYRNGQLERAATRGDGRVGEDITANARVIEDIPHQLQGTDEYPVPAVLEIRG 173 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EV+I+ DF +N + IA G KP+ANPRNAA+G LR+ N D+ R L HG+G T Sbjct: 174 EVFITVEDFPEVNAQRIADGGKPFANPRNAAAGSLRQKNIEDVKKRRLRMISHGIGFTEG 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + G P + +V + R +++DGLV KVD+ Sbjct: 234 FSPASQHDAYLALAAWGLPTSPYTEAVTDPEDVVKKVSYWADHRHDALHEMDGLVIKVDD 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q+ LG +R+PRW I++K+ ++ +T+LLDI + +GRTG +TP A +EPV + G+ + Sbjct: 294 IASQRALGSTSRAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVLVAGSTV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN+ +K R G + +GD V++++AGEVIP+V+ +V R + + Sbjct: 354 SMATLHNQSEVK---------RKG--VLIGDTVVIRKAGEVIPEVLGPVVELRDGTEREY 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP C +R L P V RC +C Q RL + R AF+IE LG+ Sbjct: 403 IFPTLCPECGTR----LAPAKADDV-DWRCPNMQSCPGQLSTRLTYLAGRGAFDIEALGE 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + ++ + + +F L S+ G + S L D++ K + Sbjct: 458 KGAEDLIRT----GILLDESGLFDLTEDDLLSSNVYTTNAGKVNASGKKLLDNLQKSKQT 513 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL----- 603 L R + +L IRHVG AR+LA Y S Q +LI PL Sbjct: 514 DLWRVLVALSIRHVGPTAARALAGRYHSIQ------------------ALIDAPLEELSE 555 Query: 604 ---VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSE-IENKKLVFTGT 657 VG IIAQ+ ++++ + V+ K + + E+ V+ + +E +V TG Sbjct: 556 TDGVGTIIAQSFKDWFEVDWHKAIVD---KWAAAGVTMEEEVGEVAEQTLEGLTIVVTGG 612 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L+ R +E + G S +S+KTD ++VG+N GSK KA++LG++I++E F+ L Sbjct: 613 LEGFTRDSVKEAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELGLRILDEAGFVRL 672 Query: 718 L 718 L Sbjct: 673 L 673 >gi|104773603|ref|YP_618583.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122984006|sp|Q1GBF7|DNLJ_LACDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|103422684|emb|CAI97297.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 671 Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 221/718 (30%), Positives = 386/718 (53%), Gaps = 55/718 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S+E+A++E+ L ++ YY+ P++ D YD R + A+P+L ++ Sbjct: 2 AESLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELKSADS 61 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 ++GGE+N L KV H +P LS+ +++ E+L +F R+ QK + + + + Sbjct: 62 IT---QRVGGEVNSDLPKVEHPVPMLSMGDVFSKEELAEFDQRV----QKAIGHPVAYNV 114 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E KIDG +++ YE+G A+ RG+G GEDV+ ++ I +P+ L I EVRGE Sbjct: 115 ELKIDGLSLSLEYEEGCLKRASTRGNGQVGEDVTKNVKYIKDVPQKLPKAI--TTEVRGE 172 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG-LGKTSE 248 Y+SK F LN E G +ANPRNAA+G LR+L+P R L+ F++ + + Sbjct: 173 CYMSKEAFAKLNQERDEAGESIFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWINPPAG 232 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 I Q++ + +M LGF N R+ + Y +E R +LPY IDG+V KVD+ Sbjct: 233 I--DSQHQAICEMAKLGFHTNENGRRLENLADVYDYIDEFTKKRDSLPYVIDGIVLKVDD 290 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ LG + PRW I++KF ++ T + +I+ +GRTG++TP A ++PV + G+ + Sbjct: 291 LALQADLGNTVKVPRWEIAYKFPPEEEETVVREIEWTVGRTGVVTPTAVMDPVRLAGSTV 350 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN D + L D+R+GD V + +AG++IP++ ++++++R D+ P+ Sbjct: 351 ARASLHNPDLLAKL-----------DVRLGDTVKLHKAGDIIPEISEVVLSKRPEDSVPY 399 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C +V L+ + A RC +C AQ E + HF SR A NI GLG Sbjct: 400 EVPTKCPSCGEDLVH-LDEEV-----ALRCINP-SCPAQVEEGITHFASRQAMNIAGLGP 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + ++D ++ AD++ L + + + F + S+ NL +I++ R Sbjct: 453 KIVKQLI-AKDLVHNV---ADLYYL------TADDLSQLDHFKEKSINNLLVAIDQSRKN 502 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S+E +F LGI +VG + A+ +A+ ++N ++ IA + L+ I +G I Sbjct: 503 SVELVLFGLGIDNVGGKAAQLIAR---KFKNMSK-----IASASVQELTAIDT--IGMTI 552 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 A+++ ++Q + A L+E + +G + + + K +V TG L R + Sbjct: 553 AESLTAYFQQ-EEAKKLLARLEEAGVNMDYLGEDGEAADNFFKGKTVVLTGKLAHYSRAE 611 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + + LGA V+ +S+KT+ ++ G++ GSKL KA+ L + + E + + +++ +T Sbjct: 612 FTKKLQALGAKVTGSVSKKTNCLVYGEDAGSKLAKAEALDIPRLTEAEAISKIEEKDT 669 >gi|315637028|ref|ZP_07892251.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22] gi|315478564|gb|EFU69274.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22] Length = 648 Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 226/694 (32%), Positives = 374/694 (53%), Gaps = 60/694 (8%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 ++E+ IS+ + YY + PI D EYD L R C A P L+ PN P ++GG + Sbjct: 9 NIEKLISWAN-AYYVFDNPIATDEEYDKLARLCLAYEQENPKLSH---PNSPNKRVGGIV 64 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 K +H S E ++N ++L +I R K + ++ F +PK DG + + Sbjct: 65 LDGFIKASHLSRMWSQEDVFNTQELEDWIKR-----ASKVNTNLQFFCQPKFDGASLNLI 119 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 YE G A RGDG GEDV+ + I +IP L + +IE+RGEV I K DF +N Sbjct: 120 YENGILKQAITRGDGTVGEDVTNNAKTIFSIP--LEIEEKSLIEIRGEVVIKKADFEKIN 177 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQK 260 E G + +ANPRNAA+G LR+L+ ++IT R L F V G+G+ S + K E+++ Sbjct: 178 IERAKNGEQLFANPRNAAAGSLRQLD-SNITAKRKLFFNVWGIGQNS-LEHKKYSEIMEY 235 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 + LGF A+ I + Y++ SIR+ +DG+V K+D+ Q++LG + Sbjct: 236 IYSLGFERPQMQTLASNIEEIENLYHKFISIRNDFEMMLDGMVIKIDDIETQEELGYTVK 295 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 PRW ++KF + +T+L I +Q+GRTGI+TPVA +EP I G+ ++ ATLHN D I+ Sbjct: 296 FPRWSCAYKFPAVEKTTKLKAITLQVGRTGIITPVAEVEPTLIDGSTVSRATLHNFDEIE 355 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 L D+++ D V++ ++G++IPK+ + R D S P+ CP C S Sbjct: 356 RL-----------DLKINDEVIIIKSGDIIPKITKVFFERRKGDEITISRPTSCPTCNSE 404 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 V+ + G ++ +C L C ++ + + +F S++ NI+GLG + ++ F +E Sbjct: 405 VLDE-----GTMI---KCQ-NLDCPSRVVNSIIYFASKNCMNIDGLGNKIVEQLF-NEKK 454 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 + I DI++L+ ++++ GF + + NL +I R L R I +LGI Sbjct: 455 IYDI---LDIYSLKYED------LQDLEGFKEKKINNLLKAIENTRGSELHRVINALGIE 505 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 H+G ++ + F ++ N D+ SLI + G+ +A + +EF + + Sbjct: 506 HIGEVASKQIC------LEFGLDV------INKDYDSLIALDGFGEQMANSFIEFMRVNK 553 Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 N+ VE L+ ++P + ++ + +NK +V TGT+ K R + + + LGA VS+ Sbjct: 554 NL--VEKLISIINPKVEIKKEVSENPFKNKTVVITGTMSK-SRGEIKSMLEDLGAKVSSG 610 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +S+KTD +I G++ GSK +KA +LGVK++ EE+ Sbjct: 611 VSKKTDYVIFGEDAGSKYDKAIELGVKLLTEEEM 644 >gi|303281478|ref|XP_003060031.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458686|gb|EEH55983.1| predicted protein [Micromonas pusilla CCMP1545] Length = 887 Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 252/824 (30%), Positives = 391/824 (47%), Gaps = 137/824 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 AL + ++SL + IS D+ Y+ + P+ D+ YDA + R +A+ P + R + Sbjct: 76 ALPASEVPAAMASLAEFISRADEAYHNDADPVASDAAYDATRLRLEALEALHPAMIREDS 135 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW---QKKDDNS-- 125 P G + + +L +V H++P SL ++ +D+R F+ R+ R ++ DD++ Sbjct: 136 PIGAVGAKPAAWS-ALPQVEHAVPMRSLGNCFDDDDVRAFVARVTRALGPPERFDDDARA 194 Query: 126 -IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NI 181 + F EPKIDG ++RY G V AA RGDG GEDV+ I IP P L+ + Sbjct: 195 PLRFCAEPKIDGASASLRYVDGVLVVAASRGDGEVGEDVTRQIGGIPGAPTTLTGRAGDW 254 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-----TDITRYL 236 P +E+RGEV+I+ +DF ALN A G + + RNAA+G +RRL P D RYL Sbjct: 255 PATLEIRGEVFIADDDFAALNARREARGMPTFKSARNAAAGAMRRLEPPSRDGADAGRYL 314 Query: 237 NFFVHGLG----KTSEIFAKGQYEMLQKMRCLGF-PVNN-GVRQANTFHGIVSYYNEMKS 290 F +G G +T + Q L + LG PV G + + + ++ Sbjct: 315 RFLAYGWGEVKPQTELLPWSSQRAFLASLPALGLSPVPTLGPITDDVAALVAGSHAALER 374 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R++L Y +DG+VYKVD+ + Q+ LG +R+PRW +HKFA + A T L +D+Q+GRTG Sbjct: 375 DRASLGYRVDGVVYKVDDVASQRILGADSRAPRWATAHKFAAETAVTTLRAVDVQVGRTG 434 Query: 351 ILTPVARLE-PVNIGGALITNATLHN-EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 LTPVA L+ PV +GGA +T ATLHN ED V R G +R+G RV+V+RAG+ Sbjct: 435 ALTPVATLDPPVALGGATVTRATLHNFED----------VARKG--LRLGARVVVERAGD 482 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL---------------- 452 VIP+VV +V E + + P+ CP C S V + + K Sbjct: 483 VIPRVVR-VVAEGEEEGAVVATPTRCPACGSAVSKTPLAASVKCPKKRLSSPYESGDAAS 541 Query: 453 -----------------------VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 A RCTGG C AQ LER+ HF SRDA ++ GL ++ Sbjct: 542 SSFAAVDDESEDATSSPSSSSSSAAVLRCTGGWRCPAQALERVAHFASRDALDVRGLARK 601 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRR-----------------------------QQTS 520 Q+ A I PAD+FT++ R + Sbjct: 602 QIADLLD----AGVIASPADLFTMRARFEHLGVDPDASGEDDDARGDGGGVAVPEFWTYA 657 Query: 521 TTKIENILGFGDVSVTNLYDSINKR-RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579 + K E L S L+D++++ + L RFI+SLGI VG A+ L++ Y + Sbjct: 658 SGKDEGKL---KRSAKKLFDALDETAAGVPLHRFIYSLGIPQVGLTTAKLLSRKYRTLDA 714 Query: 580 F---------AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 F A+ + A + + ++ + +G ++A I EF+ N+ V+ +L+ Sbjct: 715 FRDAAEEAAAAKAAASADAAASTEAPAMTDIDGIGPVVAATIGEFWSERANVNVVDDMLR 774 Query: 631 E---------------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 S + + + + +V TG + + R +A + V G Sbjct: 775 NGVVVSDDASPPDASDASDASNAAAASATGPLTGYAVVVTGAVPGMTREEAFDAVAAAGG 834 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +S KT +++VG+ G K E A+ GV +++ E FL +L Sbjct: 835 SPQKAVSGKTHVLVVGEGAGRRKAEAAEARGVAVIDAEAFLRVL 878 >gi|259501108|ref|ZP_05744010.1| DNA ligase [Lactobacillus iners DSM 13335] gi|302190444|ref|ZP_07266698.1| DNA ligase [Lactobacillus iners AB-1] gi|259167802|gb|EEW52297.1| DNA ligase [Lactobacillus iners DSM 13335] Length = 672 Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 227/717 (31%), Positives = 379/717 (52%), Gaps = 69/717 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L DP Sbjct: 4 LSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI---DP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG L KV H P LS+ +++ ++L +F RI QK + + + +E Sbjct: 61 DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRI----QKMVGHVVDYNVE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEVRGE Sbjct: 117 LKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEVRGEC 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ K F LN E G +ANPRNAA+G LR+L+ ++T R L+ +++ E Sbjct: 175 YMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTYIYTWVNPPET 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V KVD+ Sbjct: 234 IT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDL 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G +++ Sbjct: 293 ALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVS 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + P+ Sbjct: 353 RAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRLQASLPYE 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C +V K A RC + C AQ E + HF SR A NI GLG + Sbjct: 402 IPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVGLGPK 454 Query: 490 ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 QL D AD++ L S ++ + F D S+ NL ++I + Sbjct: 455 IVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAIENSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 S+E +F LGI HVGA+ AR +A+ + ++N I + D L+++ +G Sbjct: 502 QNSVELLLFGLGIDHVGAKAARLIAQKF-------HDLNTIRKCSIAD---LMQIDTIGQ 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVFTGTL 658 IA+++V++++ +V+ L+ ++ + +G + + + K +V TG L Sbjct: 552 TIAESMVKYFEQQ----SVKELMDQLQIAGVNFKYLGASDTQSIEDNFFKGKNVVLTGKL 607 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ + Sbjct: 608 AHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEVI 664 >gi|306825169|ref|ZP_07458511.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432605|gb|EFM35579.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 652 Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 218/685 (31%), Positives = 364/685 (53%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+PD ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V A R Sbjct: 76 LYSLQDAFSREELEAFDARV-----RKELPQPTYICELKIDGLSISLTYEKGILVVGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRTSFDQVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q ++L+ + LGF VN+ Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EVSPSTRDSQEKVLKHLEQLGFVVNSK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A + I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAESMDEIWNFIQEVGQERDNLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C +++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCDCQLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS---EDPAFSIRIPA 508 A RC C AQ +E L HF SRDA NI GLG ++ F + +D A R+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAANLVKDVADIYRLNE 465 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D F L + G + S + LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 466 DDFLL-------------LEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +++ S +N AQ D + + +G +IAQ++ ++ + ++ Sbjct: 513 LLLQHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFATEGSKILLDE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L+++ R +A+ + LGA V+ +S+KT+ Sbjct: 562 LKEAGVNLDYKGQTVVADAVLSGLTVVLTGKLERLTRSEAKSKLESLGAKVTGSVSKKTN 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++ G + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646 >gi|256372325|ref|YP_003110149.1| DNA ligase, NAD-dependent [Acidimicrobium ferrooxidans DSM 10331] gi|256008909|gb|ACU54476.1| DNA ligase, NAD-dependent [Acidimicrobium ferrooxidans DSM 10331] Length = 664 Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 220/698 (31%), Positives = 351/698 (50%), Gaps = 54/698 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A +++L I + YY PI+ D E+D L A+ A P+L P+ P Sbjct: 3 ESAAARVAALRSLIQRASEAYYVADDPIMSDDEFDGLVLELRALEAAHPEL---RSPDSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G S V H P LSL+ +++ ++L ++ R R D ++FF L KI Sbjct: 60 TERVGAPPGSSFAPVRHRTPMLSLDNVFDADELDAWVERTRRGLGH--DPALFFEL--KI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193 DG +++ Y G+ AA RGDG GEDV+A + IPR L + P ++EVRGE+++ Sbjct: 116 DGLALSLTYVDGRLAQAATRGDGEVGEDVTANALVVDAIPRRLKGVTGPGLVEVRGELFL 175 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 ++ F ALN+ + +P+ANPRNAA+G LR+ +P R L+FF + L + Sbjct: 176 PRSAFRALNERV----ERPFANPRNAAAGSLRQKDPALTRDRGLSFFAYQLEEGPSF--D 229 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 +E LQ + +GF V + + R L YDIDG V KVD + Sbjct: 230 YHHEALQWLGEVGFQVEAHATPVG-LDELADKLAWLAEARDGLDYDIDGAVIKVDRLEDR 288 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +LG +PRWMI++KF ++ TRL+ I++ +G++G +TP A L+PV +GG+ ++ AT Sbjct: 289 VRLGTTTHAPRWMIAYKFPAEERPTRLVGIEVSVGKSGKVTPFAVLDPVRVGGSTVSRAT 348 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I L D+RVGD V+V+RAGEVIP+VV ++ R DA P+ FP+ Sbjct: 349 LHNADQIARL-----------DVRVGDTVIVRRAGEVIPEVVRPVLELRPDDAVPWVFPT 397 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C + +VRD + RC C Q ++RL HF SRDA +I+GLG+Q+ Sbjct: 398 TCPVCHTPLVRD------RGEVDWRCP-NRRCPEQLVQRLIHFASRDAMDIDGLGEQRAR 450 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + A + +P D++ L + + + G S+ L I R+ L R Sbjct: 451 QLVE----AGLVVVPPDLYRL------TDDDLARLPGVRHRSIERLRAGIEASRSRPLGR 500 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 IF+L I +VG + +A S + L RV +G ++A ++ Sbjct: 501 VIFALAIDNVGQHVGMLVADVVGSLSGLRTVTED----------ELCRVEGIGPVVAASV 550 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 V F + ++ L + + + +E V TGT+ I R + + + Sbjct: 551 VAFRDSDLGREILDKLERAGVGASADRPRAAGGPLEGLSFVLTGTVPGIGRAELAALIEE 610 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 G V +S++T ++ G +PGSKL++A+ G+ +++ Sbjct: 611 HGGQVRTSVSQRTSYVVAGASPGSKLDEARARGIPVID 648 >gi|332200505|gb|EGJ14577.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41317] Length = 648 Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 15 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 71 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 72 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 126 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 127 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 182 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 183 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 240 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 241 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 300 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 301 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 349 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 350 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 404 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 405 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 457 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG+++++ Sbjct: 458 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKVSQ 508 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N +Q + +A + +G +IA+++ ++ + + Sbjct: 509 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 557 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 558 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSISKKTD 617 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 618 LVVVGADAGSKLQKAQELGIQVRDE 642 >gi|289168011|ref|YP_003446280.1| DNA ligase [Streptococcus mitis B6] gi|288907578|emb|CBJ22415.1| DNA ligase [Streptococcus mitis B6] Length = 652 Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 215/680 (31%), Positives = 359/680 (52%), Gaps = 55/680 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+PD ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V A R Sbjct: 76 LYSLQDAFSREELEAFDARV-----RKEVTHPTYICELKIDGLSISLTYEKGILVAGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+++ ++ + IP +L + I VRGE Y+ + F +N G +A Sbjct: 131 GDGSVGENITENLKRVKDIPLILPEELD--ITVRGECYMPRASFDQVNQARQENGEPEFA 188 Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+ + R L F++ + S Q ++L+ + LGF VN Sbjct: 189 NPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPKRI 246 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 I + E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF + Sbjct: 247 LTENIDEIWDFIQEIGQKRENLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFPAE 306 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 + +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI + Sbjct: 307 EKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEK 355 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 356 DIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCDSDLLHFEDE------ 408 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RC C AQ +E L HF SRDA NI GLG ++ FS + D+ + Sbjct: 409 VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSVVEKL-------FSANLVKDVANI 460 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 R Q+ +E G + S + LY +I + S E+ +F LGIRHVG++ ++ L ++ Sbjct: 461 YRLQEEDFLLLE---GVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLLLQH 517 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S +N AQ D + + +G +IA+++ ++ + + LKE Sbjct: 518 FHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFATEGSEILLRE-LKEAG 566 Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD+++ G Sbjct: 567 VNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTDLVVAG 626 Query: 692 DNPGSKLEKAQQLGVKIMNE 711 + GSKL+KAQ+LG+++ +E Sbjct: 627 ADAGSKLQKAQELGIEVRDE 646 >gi|227501728|ref|ZP_03931777.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725] gi|227077753|gb|EEI15716.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725] Length = 680 Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 233/728 (32%), Positives = 375/728 (51%), Gaps = 81/728 (11%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + L QE+ H + YY +P I D+++DAL +R + P+LA P+ P + Sbjct: 2 QREWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLMDLEKQHPELAV---PDSPTQQ 57 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G N + H +SL+ +++ +++ ++ R + + E KIDG Sbjct: 58 VGATPNAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKIDGL 107 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 I + Y G+ AA RGDG GE+++ R I IP L+ +PE+IE+RGEVY+ Sbjct: 108 SIDLVYRNGRLDTAATRGDGTVGEEITPNARVISDIPHELTGTDEYPVPELIEIRGEVYM 167 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 DF +N+E A G+ +ANPRNAA+G LR +P ++ R L HGLG Sbjct: 168 RPEDFEEINEERAADGKARFANPRNAAAGGLRMKDPAEVKKRRLRMVCHGLGAREGFSPS 227 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + + G PV+ RQ ++ + VSY+ E R +++DGLV KVD+ Sbjct: 228 SQHDAYKAIAAWGLPVSPYTRQVHSAAEVQEEVSYWAEH---RHDAIFEMDGLVVKVDDL 284 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG +R+PRW I++K+ ++ +T+L +I++ +GRTG +TP A +EPV + G+ ++ Sbjct: 285 GSQRQLGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPFAIMEPVFVSGSTVS 344 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+ +K R G + +GD +++++AGE+IP+V+ + +R +S Sbjct: 345 MATLHNQSEVK---------RKG--VLIGDTIIIRKAGEIIPEVLGPVREQRDGSEYEWS 393 Query: 430 FPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG- 487 FP+ CP C + L P K G A RC +C AQ RL++ SR +IE LG Sbjct: 394 FPTQCPACGTT----LAPQKDGD--ADWRCPNTQSCPAQLSARLEYLASRKGLDIEALGE 447 Query: 488 KQQLDF----FFKSEDPAFSIR----IPADIFTLQRRQQTSTTKIENILGFGDVSVT--- 536 K +D E F + + +D++T +R + +K E G+V V Sbjct: 448 KGAMDLIENGILTDESELFELTEEKLLASDVYTAKRDTKDKRSKKE-----GNVKVNTAG 502 Query: 537 -NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 NL ++ + ++ R + SL IRHVG AR+LA Y S + + A +D Sbjct: 503 KNLLQNLEEVKDRDFWRVLVSLSIRHVGPIAARALAARYGS-------MEKLRAAKTED- 554 Query: 596 LSLIRVPLVGDIIAQAI-----VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 L V VG +IA++ V++++ A L EV+ E +E Sbjct: 555 --LAEVDGVGAVIAESFHAWFEVDWHRTIVEKWAEAGLAMEVAA-----EDRKEQTLEGL 607 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+L+ R A+E + G + +S+KT ++ G N GSK +KA+ LGV I+N Sbjct: 608 TIVVTGSLEDFTRDSAKEAIISRGGKATGSVSKKTSYLVAGANAGSKEDKARDLGVPILN 667 Query: 711 EEQFLFLL 718 EEQF LL Sbjct: 668 EEQFHTLL 675 >gi|307709253|ref|ZP_07645711.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564] gi|307619836|gb|EFN98954.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564] Length = 648 Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 223/688 (32%), Positives = 362/688 (52%), Gaps = 71/688 (10%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+PD ++ P +++GG++ K +H P Sbjct: 15 YYTSDNPSVSDSEYDRLYRELVELESAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 71 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V A R Sbjct: 72 LYSLQDAFSREELEAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGATR 126 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 127 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 182 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q ++L+ + LGF VN Sbjct: 183 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 240 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I + E+ R +LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 241 RILAENIDEIWHFIQEVGEERDSLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP 300 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 301 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 349 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 350 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCDSGLLHFEDE---- 404 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 405 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 457 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG + ++ Sbjct: 458 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGNKASQ 508 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +++ S +N AQ D + + +G +IA+++ ++ + E L Sbjct: 509 LLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFATEGS----EIL 554 Query: 629 LKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 L+E+ + + + + N L V TG L++++R +A+ + LGA V+ +S+ Sbjct: 555 LRELKEAGVNLDYKGQTVVANAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSK 614 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 KTD+++ G + GSKL+KAQ+LG+++ +E Sbjct: 615 KTDLVVAGADAGSKLQKAQELGIEVRDE 642 >gi|19552465|ref|NP_600467.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC 13032] gi|62390131|ref|YP_225533.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC 13032] gi|81760918|sp|Q8NR20|DNLJ_CORGL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21324011|dbj|BAB98637.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Corynebacterium glutamicum ATCC 13032] gi|41325467|emb|CAF19947.1| DNA LIGASE [Corynebacterium glutamicum ATCC 13032] Length = 680 Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 228/721 (31%), Positives = 365/721 (50%), Gaps = 72/721 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q R+ + L +++ YH D YY +P I D+++DAL ++ + P+LA P+ P Sbjct: 7 QLRRTWNDLAEKVRYHRDRYYN-EQPEIPDADFDALFKQLQQLEEDHPELAV---PDSPT 62 Query: 76 NKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 +G + S V H LSL+ +++ ++LR ++ R + + E K Sbjct: 63 MVVGAPVAEQSSFDNVEHLERMLSLDNVFDEQELRDWLGRT---------PAKQYLTELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRG 189 IDG I + Y G+ AA RGDG GED++A R I IP L +P ++E+RG Sbjct: 114 IDGLSIDLVYRNGQLERAATRGDGRVGEDITANARVIEDIPHQLQGTDEYPVPAVLEIRG 173 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EV+I+ DF +N + IA G KP+ANPRNAA+G LR+ N D+ R L HG+G T Sbjct: 174 EVFITVEDFPEVNAQRIADGGKPFANPRNAAAGSLRQKNIEDVKKRRLRMISHGIGFTEG 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + G P + +V + R +++DGLV KVD+ Sbjct: 234 FSPASQHDAYLALAAWGLPTSPYTEAVTDPEDVVKKVSYWADHRHDALHEMDGLVIKVDD 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q+ LG +R+PRW I++K+ ++ +T+LLDI + +GRTG +TP A +EPV + G+ + Sbjct: 294 IASQRALGSTSRAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVLVAGSTV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN+ +K R G + +GD V++++AGEVIP+V+ +V R + + Sbjct: 354 SMATLHNQSEVK---------RKG--VLIGDTVVIRKAGEVIPEVLGPVVELRDGTEREY 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP C +R L P V RC +C Q RL + R AF+IE LG+ Sbjct: 403 IFPTLCPECGTR----LAPAKADDV-DWRCPNMQSCPGQLSTRLTYLAGRGAFDIEALGE 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + ++ + + +F L S+ G + S L D++ K + Sbjct: 458 KGAEDLIRT----GILLDESGLFDLTEDDLLSSNVYTTNAGKVNASGKKLLDNLQKSKQT 513 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL----- 603 L R + +L IRHVG AR+LA Y S Q +LI PL Sbjct: 514 DLWRVLVALSIRHVGPTAARALAGRYHSIQ------------------ALIDAPLEELSE 555 Query: 604 ---VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSE-IENKKLVFTGT 657 VG IIAQ+ ++++ + V+ K + + E+ V+ + +E +V TG Sbjct: 556 TDGVGTIIAQSFKDWFEVDWHKAIVD---KWAAAGVTMEEEVGEVAEQTLEGLTIVVTGG 612 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L+ R +E + G S +S+KTD +++G+N GSK KA++LG++I++E F+ L Sbjct: 613 LEGFTRDSVKEAIISRGGKASGSVSKKTDYVVIGENAGSKATKAEELGLRILDEAGFVRL 672 Query: 718 L 718 L Sbjct: 673 L 673 >gi|168486469|ref|ZP_02710977.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00] gi|183570508|gb|EDT91036.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00] Length = 652 Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 76 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG+++++ Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKVSQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N +Q + +A + +G +IA+++ ++ + + Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSISKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646 >gi|284042834|ref|YP_003393174.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684] gi|283947055|gb|ADB49799.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684] Length = 684 Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 228/707 (32%), Positives = 369/707 (52%), Gaps = 60/707 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +E++YH YY P I D YDAL A+ A P+L P+ P ++GG + Sbjct: 13 LRRELAYHGHRYYDLDDPEIGDDAYDALLDELRALEAAHPELL---TPDSPTQRVGGAVV 69 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFTLEPKIDGTMITI 141 L KV H LSL + ++L ++ R+ ++ +D + +EPK+DG +++ Sbjct: 70 SELRKVRHRRRMLSLANARSEQELLAWVERMRAHLAREGIEDPRFEYVVEPKVDGLAMSL 129 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 YE G + RGDG GEDV+ IR I IP+ + P +EVRGEVY+S DF AL Sbjct: 130 HYENGTLIRGVTRGDGEIGEDVTHNIRTIEQIPQQID-GAPAWLEVRGEVYMSLADFEAL 188 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 N GR + NPRN+A+G +R+L+ R L+ + +G+G+T I +E LQ Sbjct: 189 NLRRAEEGRSTFMNPRNSAAGTIRQLDSRLAAERPLSMWCYGIGETEGISFSTHWESLQW 248 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 +R GFPVN+ +R+ T +V+ + R +L ++IDG+V KVD+ LQ++LG R Sbjct: 249 LRAHGFPVNDEIRRIRTAEKVVARCERWQERRGSLDFEIDGVVVKVDDVELQRRLGVVGR 308 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 PRW I+ KF A T+L D+ +G+ G L P A LEPV++GG + ATLHNE+ + Sbjct: 309 DPRWAIAWKFPPTTAVTQLHDVMWNVGKFGTLHPFAVLEPVHVGGVTVKLATLHNEEDL- 367 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQPFSFPSFCPICQ 438 +D+R GD V+V RAG+VIP+V+ V ER A P+ CP+C Sbjct: 368 ----------ARKDVRPGDDVIVLRAGDVIPQVLSPAPHVAERSDRAPVPRPPARCPVCD 417 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + V+ T +C C ++ + L+H+VSR A +++G+G++Q+ + Sbjct: 418 TPTVKGEGVFT-------KCP-NRDCPGRRWQLLQHYVSRGAMDVDGIGEKQVSVLMEH- 468 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 +R P D + L S ++ + FG+VS N ++I + R +F LG Sbjct: 469 ---GLLRTPGDYYRL------SAEQLMQLDRFGEVSARNAVEAIAASKERPFGRVLFGLG 519 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I VG+ RSLA+ + + I+ + A + ++ + P +G I+ + I + ++ Sbjct: 520 IEGVGSVTGRSLAQRF-------RTIDALTAASAEE---IAATPGIGPIVGRLIHDQLRD 569 Query: 619 PRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++ L ++E P G + +K +V TGTL + R +A E + Sbjct: 570 EHLRAVIDDLRAHGVRMEEDGPPPG------EGPLADKAIVLTGTLPTLTREEATERILA 623 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G V++ +SR+TD ++ G+ G+KLEKA++L V +++E+ LL+ Sbjct: 624 AGGRVTSSVSRRTDYVVAGERAGTKLEKAERLRVPVLDEDGLEALLR 670 >gi|168483195|ref|ZP_02708147.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00] gi|168492012|ref|ZP_02716155.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04] gi|221231854|ref|YP_002511006.1| DNA ligase [Streptococcus pneumoniae ATCC 700669] gi|225854613|ref|YP_002736125.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae JJA] gi|254781427|sp|B8ZPV9|DNLJ_STRPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781431|sp|C1CEA4|DNLJ_STRZJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|172043461|gb|EDT51507.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00] gi|183573785|gb|EDT94313.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04] gi|220674314|emb|CAR68857.1| DNA ligase [Streptococcus pneumoniae ATCC 700669] gi|225722247|gb|ACO18100.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae JJA] gi|332201605|gb|EGJ15675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47368] Length = 652 Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVADSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 76 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG+++++ Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKVSQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N +Q + +A + +G +IA+++ ++ + + Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSISKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646 >gi|183603490|ref|ZP_02717204.2| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06] gi|183576581|gb|EDT97109.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06] Length = 648 Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 15 YYTSDNPSVADSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 71 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 72 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 126 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 127 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 182 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 183 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 240 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 241 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 300 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 301 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 349 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 350 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 404 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 405 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 457 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG+++++ Sbjct: 458 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKVSQ 508 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N +Q + +A + +G +IA+++ ++ + + Sbjct: 509 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 557 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 558 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSISKKTD 617 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 618 LVVVGADAGSKLQKAQELGIQVRDE 642 >gi|302336117|ref|YP_003801324.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084] gi|301319957|gb|ADK68444.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084] Length = 747 Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 236/712 (33%), Positives = 358/712 (50%), Gaps = 59/712 (8%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P + D+E+D L A+ A P+L P +IGG ++ V H+ Sbjct: 61 AYYALDDPEMTDAEFDRLLVELQALESAHPELV---SPESYTQRIGGYVSDQFEPVRHAQ 117 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 S++ ++++L +++ R + + +T E KIDG I + Y G V AA Sbjct: 118 RMYSIDDAMSLDELDEWLARTDGALGATAERPVAYTCELKIDGLGIALTYRDGTLVRAAT 177 Query: 154 RGDGHSGEDVSACIRAIPTIPRVL-SLNIPEI--------IEVRGEVYISKNDFLALNDE 204 RGDG +GE+V+A I IPR L S + I IEVRGEVY+ K+ F+ LN++ Sbjct: 178 RGDGTTGENVTANALTIKDIPRALASAGMGRIAGGGFGVSIEVRGEVYMPKHSFVRLNEQ 237 Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 A GR+P+ANPRNAA+G LR+ + + R L F++ + S + Q++ L ++ Sbjct: 238 NDAAGRQPFANPRNAAAGSLRQKDSSVTKARDLETFIYAVADESPLAIDTQHDFLSWLKD 297 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 GF VN R+ + + + + + R L YDIDG+V KVD F+ Q LG AR+PR Sbjct: 298 CGFSVNPHARRVESSREVRRFCVDALAYRGELDYDIDGVVVKVDSFAGQAALGFTARAPR 357 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W ++ KF ++ T L I +Q+GRTG+LTPVA +PV + G+ I ATLHN D ++ Sbjct: 358 WSMAFKFPPEERRTVLRQIRVQVGRTGVLTPVAEFDPVVVAGSTIARATLHNIDEVR--- 414 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN---ERHPDAQP-FSFPSFCPICQS 439 +D+R GD ++V +AG+VIP+VV + +A+P + P CP C S Sbjct: 415 --------RKDVREGDTIVVHKAGDVIPEVVGPVTEGPLAAEHEARPLWDMPETCPSCGS 466 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK--- 496 VVR+ G++ A RC + C AQ ERL H+ SR+A +I+GLG + + + Sbjct: 467 PVVRE----EGEV--AWRCV-SIDCPAQASERLIHWGSRNAMDIDGLGDEIVGRMVEQGI 519 Query: 497 -SEDPAFSIRIPADIFT---LQRRQQTSTTKIENILGF--GDVSVTNLYDSINKRRNISL 550 ++ + R+ D R +T+ E G G + + + L Sbjct: 520 LTDVADYYDRLDVDTLAAVDTGRVYETAGKGHEEGDGIVVGPTIAGKIMGQVEASKRAGL 579 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R +F LGIRHVGA +A LA + S Q A A +D + +V +G IAQ Sbjct: 580 GRVLFGLGIRHVGASVANLLADRFGSMQALA-------AATEED---MAQVDGIGPKIAQ 629 Query: 611 AIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++ F+ N+ VE L + G K + ++ V TGTL+K R A Sbjct: 630 SVRGFFSVEGNVAVVERLRAAGVSLEQEGFGEGPKRPQT-LDGLTFVLTGTLEKYSRGDA 688 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA VS +S+KT ++ G GSKL KAQ LGV +++E +L Sbjct: 689 GSRLKALGAKVSGSVSKKTSFVVAGAAAGSKLAKAQALGVTVLDETALDHIL 740 >gi|322376748|ref|ZP_08051241.1| DNA ligase, NAD-dependent [Streptococcus sp. M334] gi|321282555|gb|EFX59562.1| DNA ligase, NAD-dependent [Streptococcus sp. M334] Length = 652 Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 363/685 (52%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+PD ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V A R Sbjct: 76 LYSLQDAFSREELEAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ ++ F +N G Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRSSFDQVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q ++L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I + E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWDFIQEVGQERDNLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRISE-EKLDIPTNCPSCDSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F + ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLFATN----LVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 L K E+ L G + S LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RL---------KEEDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +++ S +N AQ D + + +G +IA+++ ++ + + Sbjct: 513 LLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFATEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++ G + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646 >gi|50364975|ref|YP_053400.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma florum L1] gi|81391966|sp|Q6F1V7|DNLJ_MESFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50363531|gb|AAT75516.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma florum L1] Length = 666 Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 229/717 (31%), Positives = 381/717 (53%), Gaps = 62/717 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ EQA K ++ L +++ YY P + D+EYD + + + FP+L S+ Sbjct: 1 MTKEQASKLINDLRLKLNEWAKEYYVLDNPSVDDAEYDKTIHQLLDLENQFPELITSDSI 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 K+GG ++ K TH P LSL I++ ++ F ++ + +++ +T E Sbjct: 61 T---QKVGGIVSDKFEKHTHKYPMLSLGDIFSWDEFINFNKQVAKVTGTENNE---YTAE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG I++ Y+ G RGDG GE+V+ ++ I +IP LS+ + IE+RGEV Sbjct: 115 LKIDGLSISLIYKDGVLQKGVTRGDGKVGENVTTNVKTIKSIP--LSIPSKDEIEIRGEV 172 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-----DITRYLNFFVHGLGKT 246 ++ K +F +N+E + G + +ANPRNAA+G LR+L+ ++ YL ++ + Sbjct: 173 FLGKKEFAKINEERLLNGDQLFANPRNAAAGTLRQLDSKIVAERNLDAYLYYYFNENNPI 232 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLV 303 + Q++ + +++ LG +N + T + + YY E R+ L Y+IDG+V Sbjct: 233 N-----TQFDSINQIKNLGLKINKETKICKTLEEVKLYIEYYTEK---RNELDYEIDGIV 284 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 +K+++ LQ+++G A++P+W I++KF + T+LLDI +GRTG +T A+LEPV I Sbjct: 285 FKLNDKKLQEEVGYTAKTPKWAIAYKFPAEVKQTKLLDIFPTVGRTGKITYNAKLEPVQI 344 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ A+L+N +YI +D+R+ V VK+AG++IP+V+ I +E+ Sbjct: 345 AGTTVSAASLNNAEYIM-----------AKDLRINSIVKVKKAGDIIPEVISAIKDEKFD 393 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + CP C +L KT V C C AQ L L+HF SR A NI Sbjct: 394 LLPIWEKDVQCPAC-----NELLEKTSTEVDQF-CV-NFNCPAQILRSLEHFASRGAANI 446 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 GLG Q + F+ + I ADIF ++ ++ I N FG+ S NL SI Sbjct: 447 VGLGGQTIKKLFEEK----LITNIADIFKVEEHKEN----IINFEKFGEKSFENLIASIK 498 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +N S E+ +F LGIRHVG++ A +LA+ Y + N N + L + Sbjct: 499 ESKNNSFEKTLFGLGIRHVGSKTALTLAQIYKNIDNLK----------NATYEELSSIDS 548 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG+++A +IV++++ N+ + L +V+ KN S I K V TGTL + + Sbjct: 549 VGEVLAMSIVDWFKIESNLQLINELKSFDVNFEYLGQAKNTESTISEKSFVITGTLSESR 608 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G V+ ++ S+KTD ++ G+N GSKL KA++L VK++NEE+F +L+ Sbjct: 609 DYFKDIIELNNGKVIGSV-SKKTDYVLAGENAGSKLTKAEELNVKVINEEEFFAILK 664 >gi|331266328|ref|YP_004325958.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5] gi|326683000|emb|CBZ00617.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5] Length = 652 Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+PD ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V A R Sbjct: 76 LYSLQDAFSREELEAFDARV-----RKELPQPTYICELKIDGLSISLTYEKGILVVGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q ++L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I + E++ R LPYDIDG+V KV+ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWDFIQEVEQERDNLPYDIDGVVIKVNNLAGQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S+++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRISE-EKLDIPTNCPSCDSQLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F + ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLFATN----LVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 L K E+ L G + S + LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RL---------KEEDFLLLEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +++ S +N AQ D + + +G +IAQ++ ++ + ++ Sbjct: 513 LLLQHFHSIKNLAQA----------DPEEVASIESLGSVIAQSLQTYFATEGSKILLDE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L+++ R +A+ + LGA V+ +S+KT+ Sbjct: 562 LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSKLESLGAKVTGSVSKKTN 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++ G + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646 >gi|149012887|ref|ZP_01833800.1| DNA ligase [Streptococcus pneumoniae SP19-BS75] gi|182684133|ref|YP_001835880.1| DNA ligase [Streptococcus pneumoniae CGSP14] gi|254781428|sp|B2IPZ1|DNLJ_STRPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147763176|gb|EDK70116.1| DNA ligase [Streptococcus pneumoniae SP19-BS75] gi|182629467|gb|ACB90415.1| DNA ligase [Streptococcus pneumoniae CGSP14] gi|301801994|emb|CBW34723.1| DNA ligase [Streptococcus pneumoniae INV200] Length = 652 Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 364/685 (53%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 76 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG+++++ Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKVSQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N +Q + +A + +G +IA+++ ++ + + Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSISKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646 >gi|222823679|ref|YP_002575253.1| DNA ligase, NAD-dependent [Campylobacter lari RM2100] gi|254781279|sp|B9KG17|DNLJ_CAMLR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222538901|gb|ACM64002.1| DNA ligase, NAD-dependent [Campylobacter lari RM2100] Length = 651 Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 227/691 (32%), Positives = 355/691 (51%), Gaps = 70/691 (10%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYD L R + D + P I + K+THS Sbjct: 19 AYYEDDEPLASDEEYDKLIRELKEFEALYKDKISKDSPT---QNIAPTIQSEFHKITHSA 75 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 K+W++ED+ F R W K+ F +EPK DG + + YE GK + A Sbjct: 76 ------KMWSMEDV--FDEAELRAWAKRAKCEFDFFIEPKFDGASLNLTYENGKLISGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ ++ I IP+++ + IE+RGEV I K DF +N++ G + Sbjct: 128 RGDGEIGEDITLNVKEISNIPKIIPYK--DKIEIRGEVVILKEDFEKINEKRAKDGLSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRN ASG LR+L+ T IT R L F+ G+G+ S F+K E+++ +R LGF ++ Sbjct: 186 ANPRNGASGSLRQLD-TSITKERNLKFYPWGVGENSLKFSK-HSEVMEFIRSLGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 V T ++ Y+E+ R P +DG+V +VD+ ++LG + P++M + KF Sbjct: 244 VYCVKTLDEVLEKYHELLEKRDQKPMMMDGMVVRVDDLKKCQELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +T LL +++Q+GR+G++TPVA LEPV + G ++ +ATLHN D I L Sbjct: 304 ALEKTTTLLGVNLQVGRSGVITPVAILEPVELDGVVVKSATLHNFDEITRL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 + +GD V V R+G+VIPK+ + R + PS CP C S ++ + Sbjct: 355 --GVMIGDSVSVIRSGDVIPKITKVFTQRRDGLESKITKPSLCPECLSELLDE------- 405 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A +C L C A+ + + +FVS+ NI+GLG+ ++ FK I IF Sbjct: 406 -GAFLKCQ-NLDCKARLVNSIIYFVSKKCLNIDGLGENIVELLFKEG----KITNIESIF 459 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L+ N+ GF + + NL ++I + SL RFI +LGI H+G A+ LA Sbjct: 460 FLKYDD------FLNLEGFKEKKINNLLNAIENAKKCSLSRFITALGIEHIGEVAAKKLA 513 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF----YQNPRNICAVEA 627 + + + F Q + + + + G+ +A+++ EF +Q ++ + Sbjct: 514 QSF-GFDWFLQ-----------SYEAYVNLEGFGEQMAKSLQEFTKINHQRIKHFYEILH 561 Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 L E + E ++ I NK V TGTL K + H +E + GA VS+ +S+KTD Sbjct: 562 LEDE------KKELALNENISNKTFVITGTLSKSRDH-FKELIESFGAKVSSSVSKKTDF 614 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ G GSKLEKAQ LGVK +NE++F LL Sbjct: 615 VLYGSEAGSKLEKAQSLGVKCINEDEFNALL 645 >gi|262066346|ref|ZP_06025958.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693] gi|291379910|gb|EFE87428.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693] Length = 696 Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 226/707 (31%), Positives = 381/707 (53%), Gaps = 52/707 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L++++ + D YY ++ +I D E+D L + +++ +P+ + P +G + Sbjct: 34 LKEDLDKYRDSYYNDNESLISDYEFDILLKELESLEEKYPEYKEASSPTAS---VGASLK 90 Query: 84 LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + FK V H+ P LSL +NI ++ FI RI + K+++ + + LE K+DG I++ Sbjct: 91 ENKFKKVEHAHPMLSLANSYNIGEVVDFIERIKKRISKEEE--LKYCLEVKLDGLSISLT 148 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 Y +GK V A RGDG GEDV+ I I ++ + L I IE+RGE+ + F LN Sbjct: 149 YVQGKLVRAVTRGDGFIGEDVTENILQIASVVKTLPQAID--IEIRGEIVLPLASFEKLN 206 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 +E + G + +ANPRNAASG LR+L+P + R L+ + + L + ++ K E ++ + Sbjct: 207 NERLEKGEELFANPRNAASGTLRQLDPKIVKERALDAYFYFLVEADKLGLKSHSESMKFL 266 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 +G I + + R LPY+ DGLV KVDE +L ++G +++ Sbjct: 267 ESMGIKTTGIFELLENSKDIEQRIDYWEKERENLPYETDGLVIKVDEINLWDEIGYTSKT 326 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++KF Q ST L D+ Q+GRTG LTPVA LE V + G+ + A+LHN I+ Sbjct: 327 PRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNISEIQ- 385 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GDRV +++A E+IP+VV I ER + + P CP+C ++ Sbjct: 386 ----------RKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKIIEEPINCPVCDHKL 435 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R+ + +C C A+ +++FVSRDA NI GLG + ++ F D Sbjct: 436 EREEG------LVDIKCVNE-ECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFI---DLG 485 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + I+ DI+ L +T +ENI G S+ NL +SI + +N ++ I++LGI Sbjct: 486 Y-IKTVVDIYDL----KTHREDLENIDKMGKRSIENLLNSIEESKNREYDKVIYALGIPF 540 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G ++ LAK ++ I+ +++ ++ L + +G+I A I+ F++ + Sbjct: 541 IGKVASKVLAKA-------SKNIDKLMSMTFEE---LTAIEGIGEIAANEIIAFFKKEKT 590 Query: 622 ICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 V AL + E++ S + E N++ K +FTGTL+ R + +E + +LG Sbjct: 591 QKLVAALKEKGLKFEITESETKVE-NLNPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGK 649 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 650 NLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|306835907|ref|ZP_07468900.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726] gi|304568181|gb|EFM43753.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726] Length = 689 Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 233/728 (32%), Positives = 373/728 (51%), Gaps = 81/728 (11%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E + L QE+ H + YY +P I D+++DAL +R + P+LA P+ P + Sbjct: 11 QREWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLMDLEKQHPELAV---PDSPTQQ 66 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G N + H +SL+ +++ +++ ++ R + + E KIDG Sbjct: 67 VGATPNAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 I + Y G+ AA RGDG GE+++A R I IP L+ +PE+IE+RGEVY+ Sbjct: 117 SIDLVYRNGRLDTAATRGDGTVGEEITANARVISDIPHELTGTDEYPVPELIEIRGEVYM 176 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 DF +N+E + G+ +ANPRNAA+G LR +P ++ R L HGLG Sbjct: 177 RPEDFEEINEERASDGKARFANPRNAAAGGLRMKDPAEVKKRRLRMVCHGLGAREGFSPS 236 Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + + G PV+ V A VSY+ E R +++DGLV KVD+ Sbjct: 237 SQHDAYKAIAAWGLPVSPYTTQVHSAAEVQKEVSYWAEH---RHDAIFEMDGLVVKVDDL 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+QLG +R+PRW I++K+ ++ +T+L +I++ +GRTG +TP A +EPV + G+ ++ Sbjct: 294 GSQRQLGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPFAIMEPVFVSGSTVS 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+ +K R G + +GD +++++AGE+IP+V+ + +R +S Sbjct: 354 MATLHNQSEVK---------RKG--VLIGDTIIIRKAGEIIPEVLGPVREQRDGSEYEWS 402 Query: 430 FPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG- 487 FP+ CP C + L P K G A RC +C AQ RL++ SR +IE LG Sbjct: 403 FPTQCPACGTT----LAPQKDGD--ADWRCPNTQSCPAQLSARLEYLASRKGLDIEALGE 456 Query: 488 KQQLDF----FFKSEDPAFSIR----IPADIFTLQRRQQTSTTKIENILGFGDVSVT--- 536 K +D E F + + +D++T +R + +K E G+V V Sbjct: 457 KGAMDLIENGILTDESELFELTEEKLLASDVYTAKRDTKDKRSKKE-----GNVKVNTAG 511 Query: 537 -NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 NL ++ + ++ R + SL IRHVG AR+LA Y S + + A +D Sbjct: 512 KNLLQNLEEVKDRDFWRVLVSLSIRHVGPIAARALAARYGS-------MEKLRAAKTED- 563 Query: 596 LSLIRVPLVGDIIAQAI-----VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 L V VG +IA++ V++++ A L EV+ E +E Sbjct: 564 --LAEVDGVGAVIAESFHAWFEVDWHRTIVEKWAEAGLAMEVAA-----EDRKEQTLEGL 616 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+L+ R A+E + G + +S+KT ++ G N GSK +KA+ LGV I+N Sbjct: 617 TIVVTGSLEDFTRDSAKEAIISRGGKATGSVSKKTSYLVAGANAGSKEDKARDLGVPILN 676 Query: 711 EEQFLFLL 718 EEQF LL Sbjct: 677 EEQFHTLL 684 >gi|255038855|ref|YP_003089476.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053] gi|254951611|gb|ACT96311.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053] Length = 695 Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 230/736 (31%), Positives = 377/736 (51%), Gaps = 72/736 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ EQ +ELS +++ Y++D YYQ S I D E+D L + A+ +P R +D Sbjct: 1 MNPEQRIQELS---EKLHYYNDRYYQDSVSEISDYEFDQLLKELQALESEYPQF-RQDD- 55 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++GG + S V H P LSL+ +N ++LR F R+ R D + + E Sbjct: 56 -SPTQRVGGTVTKSFNAVYHRYPMLSLDNTYNEDELRSFDDRVRRGL---DGEAYEYICE 111 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 K DG ++ YE G V RGDG G++++ ++ I ++P RV + IP + E+RGE Sbjct: 112 LKFDGISLSFTYENGVLVRGVTRGDGTRGDEITNNVKTIRSLPLRVKADGIPPVFEIRGE 171 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEI 249 ++ + F LN+EM +G YANPRNAASG + + + R L+ +++ + Sbjct: 172 GFMPISSFQKLNEEMETLGENQYANPRNAASGSFKLQDSAEAARRGLDSYIYSF-LSDNA 230 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 F K E L ++ GF V+ G ++ +T +++Y +E + R+ LP DG+V K++ F Sbjct: 231 FFKSHEESLLALKSWGFNVSPGWKKVSTIDEVIAYIHEWEEKRAHLPLATDGIVIKINSF 290 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL----------- 358 Q++LG A+SPRW IS+K+ + L + Q+GRTG +TPVA L Sbjct: 291 EQQRELGFTAKSPRWAISYKYKAENKPAVLRMVTYQVGRTGAVTPVANLCDLSERALPYN 350 Query: 359 --EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 + V++ G + ATLHN + ++ L +R+ D V V+++GE+IPK+ + Sbjct: 351 QVKGVHLSGTRVKRATLHNANELERL-----------GVRLNDTVFVEKSGEIIPKITGV 399 Query: 417 IVNERHP-DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 V++R + +P FP+ CP C + R+ G++ A C C Q R++HF Sbjct: 400 DVSQRENYETEPVIFPTHCPECGHELQRN----EGEV--AFFCPNDSHCPPQLKGRIEHF 453 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ---------QTSTTKIEN 526 + R A NIE LG+ +++ F + +R PAD++ L + T K++ Sbjct: 454 IHRKAMNIESLGEGKIELLFDLD----LVRTPADLYDLNHDKLLGLEKNLLNEETGKLKK 509 Query: 527 ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 I F + +V N+ I R + + +F+LGIR VG +A LA Y+ S + Sbjct: 510 I-SFREKTVENILKGIEVSRTVPFKNVLFALGIRFVGQTVAEKLAAYFKSMR-------- 560 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 A + L VP +G IA +I F+ P N VE L+ + EK V E Sbjct: 561 --ALRAATYEQLTAVPEIGGRIALSIESFFSVPENQMLVER-LERAGLQMESDEKPVEIE 617 Query: 647 ---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702 ++ K V +G + +R + +E + G V + +S K + ++ G N G SKLEKA+ Sbjct: 618 SDLLDGKTFVISGVFENFERDELKEKIEANGGKVLSGVSGKLNYLLAGANMGPSKLEKAR 677 Query: 703 QLGVKIMNEEQFLFLL 718 +LGV I++EE+FL ++ Sbjct: 678 KLGVTIISEEEFLAMI 693 >gi|332299534|ref|YP_004441455.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707] gi|332176597|gb|AEE12287.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707] Length = 679 Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 218/718 (30%), Positives = 366/718 (50%), Gaps = 68/718 (9%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ L I H+ YY + P I D++YDAL +R + P+LA DP P ++G Sbjct: 9 EIEQLRTTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPELA---DPTSPSLRVG 65 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + N + +V H P LSL +N +++ + R D + + E K DG+ I Sbjct: 66 RDRNDAFVQVAHERPMLSLSNTYNYDEIAEICERTDTLLATDD---VPWVAEMKYDGSSI 122 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--LNIPEI----IEVRGEVYI 193 ++ YE+G V A RGDG G+DV+ +R I ++P L P+ IEVRGEV + Sbjct: 123 SLIYEEGVLVRAVTRGDGTLGDDVTVNVRTIQSVPLRLRPVAGHPDYTMGRIEVRGEVLL 182 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEI 249 +F LN E A G P+ANPRNAA+G L+ LN + + + ++++ L + + Sbjct: 183 PFKEFERLNGERTAEGEAPFANPRNAAAGTLKTLNSRVVAQRRLLCICYYLYALDDETRL 242 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 YE ++ + +GF +++ + Y +E R LPY DG+V KVD Sbjct: 243 -PDSYYERMKLLEEMGFNTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGIVLKVDSL 301 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+ LG A+SPRW ++K+ + A LL +D Q+GR+G++TPVA +EPV I G ++ Sbjct: 302 TQQRTLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGVVTPVANVEPVLISGTVVR 361 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNE++IK L D+ D V +++ GE+IPK+ + + R P+++P Sbjct: 362 RATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVETSLRRPESEPVR 410 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + ++ ++ G + C AC Q + R++H+ +R A +I +G + Sbjct: 411 LPELCPACGA-PLQQIDGSVG-----YYCVNSYACPPQIMGRIEHYCTRRAADI-NVGPE 463 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F I D++ L + + + + F + S+ NL SI + ++ Sbjct: 464 TIDSLFDRH----LIENIDDLYKL------TASDLAQLPNFKEKSINNLLASIEQSKSRP 513 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R ++ +GIR+VG A++LA+++ S AQ + L +P VG IA Sbjct: 514 FARLLYGIGIRYVGEGTAKTLARHFQSIDRLAQATD----------YELQALPDVGPKIA 563 Query: 610 QAIVEFYQNPRNI--------CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 + +V F+ RN C V +L+E S + S+ +E +++V +G+ + Sbjct: 564 EQVVYFFSLERNQQLIAELQRCGV--ILEERSEETTDAPQ--SNLLEGERIVISGSFTQH 619 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 R + ++ + Q G V +S +T +++G + G SK KA+QLG+ ++ EE+FL L Sbjct: 620 SRDEYKQLIEQHGGVNVGSISGRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLARL 677 >gi|260904918|ref|ZP_05913240.1| DNA ligase, NAD-dependent [Brevibacterium linens BL2] Length = 729 Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 223/746 (29%), Positives = 374/746 (50%), Gaps = 75/746 (10%) Query: 12 LSIEQARKEL-SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 LS AR + + L ++I YY+ P++ D+EYD L R + + FP+L Sbjct: 16 LSDATARAQAHADLVEKIEEQRAAYYKDDSPLVADAEYDDLVHRLEDLEEKFPELVTD-- 73 Query: 71 PNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P +GG ++ S F V H SL+ +++ E+LR + R+ + + F Sbjct: 74 -SSPTQTVGGNVDTSTFDPVEHIGRMYSLDNVFDFEELRGWYDRV----RAATSATSKFL 128 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVR 188 E KIDG + + Y G+ V AA RGDG GED++A +R I IP L + P +E+R Sbjct: 129 CELKIDGLAVNLLYRNGELVRAATRGDGRIGEDITANVRTISDIPDHLDTDYPPAEVEIR 188 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG--- 244 GEV+ F LN ++ G+ P+ANPRN+A+G LR+ +P R L+ VHG+ Sbjct: 189 GEVFFPLEKFTELNAALVEEGKAPFANPRNSAAGSLRQKDPAVTAVRPLHMLVHGIAVWT 248 Query: 245 --KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDI 299 S Q E+ ++ R G P++ + T I ++YY E R + +++ Sbjct: 249 PADDSHPEPAHQSEVYEQFRSWGLPISEYFKVLETVDEIEEFITYYGEH---RHDVTHEL 305 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V K+D+ ++Q+ LG +R+PRW + K+ ++ +T+LLDI +Q+GRTG +TP A +E Sbjct: 306 DGIVIKIDDIAVQETLGYTSRAPRWATAFKYPPEEVTTKLLDIQVQVGRTGRVTPFAVME 365 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G+ + ATLHN +V R G + +GD V +++AG+VIP+V+ +V Sbjct: 366 PVTVAGSTVERATLHN---------GYEVKRKG--VLIGDTVTLRKAGDVIPEVLGPVVA 414 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R F P+ CP C + + K RC +C AQ R+ + SR Sbjct: 415 QRDGSEYEFVMPTHCPSCGTELGEQKAGDKDK-----RCPNARSCPAQLANRIFYLASRA 469 Query: 480 AFNIEGLGKQQLDFFFKSEDP--------AFSIRIPAD------IFTLQRRQQTSTTKIE 525 AF+IE LG++ +P AF + A+ I+ ++ + T + E Sbjct: 470 AFDIEALGEEAALALTAPAEPESPPLTSEAFLFDLTAEDLAEVKIWRNKKVKGVETGERE 529 Query: 526 NILGF-----------GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 + F + L+D ++K ++ L R + +L IRHVG AR+LA ++ Sbjct: 530 LVPYFYTRPTAKKPSAPSANTKKLFDELDKAKDQDLWRVLVALSIRHVGPTAARTLAAHF 589 Query: 575 LSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + + A E+ + A + +G IA +I +++ ++ VEA + Sbjct: 590 RTLEAIRAAELEELSAVDG-----------IGSTIAASIRDWFAVDWHVEIVEAWAEAGV 638 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L R +E + G ++ +S+KTD ++ G+N Sbjct: 639 RMEDEEQETGEQTLEGLTIVATGSLSTFTRDGIKEAILGAGGKAASSVSKKTDYVVAGEN 698 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSKLEKA+ LGV++++E+ F LL+ Sbjct: 699 AGSKLEKAESLGVRVLDEDTFRILLE 724 >gi|296393986|ref|YP_003658870.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985] gi|296181133|gb|ADG98039.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985] Length = 690 Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 230/708 (32%), Positives = 356/708 (50%), Gaps = 50/708 (7%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 +L EI H YY P + D+++D L R + P+LA ++ P + G Sbjct: 18 ALADEIREHQFRYYVLDSPTVTDAQFDVLLRELQELEEEHPELASADSPTKLVGGAG--F 75 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 +V H P LSL+ +++ E L + R + +I F E KIDG +++ Sbjct: 76 TTDFAEVGHIEPMLSLDNVFDEEGLLAWAQRT----SNAAERAIRFECELKIDGLGVSLV 131 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI----PEIIEVRGEVYISKNDF 198 YE G+ AA RGDG +GEDV+ +R I +P L L PE++EVRGEV+ DF Sbjct: 132 YEHGRLARAATRGDGRTGEDVTLNVRTIGDVPHELRLAPGEAPPELLEVRGEVFFRLKDF 191 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 ALN ++A G+ P+ANPRN+A+G LR+ NP R L H G TS + Sbjct: 192 EALNASLVAEGKPPFANPRNSAAGSLRQKNPAVTAKRNLTMLCHSFGATSSWKPATRSAA 251 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 +K+R G PV+ +T ++ + + R+ + Y+IDGLV KV+E L QLG Sbjct: 252 YEKLREWGLPVSEYNTTLDTPEAVLEHIRAWGNRRAEIAYEIDGLVVKVEEMDLYGQLGH 311 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PRW I++K+ ++ T+L DI + +GRTG +TP A ++PV + G+ ++ ATLHN Sbjct: 312 TSRAPRWAIAYKYPPQEVQTKLRDIRVNVGRTGRVTPFAFMDPVLVAGSTVSLATLHN-- 369 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 + +V R G + +GD V++++AG+VIP+V+ + R + F P CP C Sbjct: 370 -------ASEVERKG--VLIGDTVVLRKAGDVIPEVLGPVAALRDGTERQFVMPDVCPEC 420 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 ++ L P V RC C AQ ER+ H R AF+IE LG + K Sbjct: 421 GTK----LAPAKESDVDI-RCPNARTCPAQLRERVFHVAGRGAFDIEALGYEAATDLLKH 475 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILG--FGDVSVTN--LYDSINKRRNISLERF 553 + I D+F L ++ T N G G +S L ++ + +N L R Sbjct: 476 Q----VIEDEGDLFDLDEQRLLRTEIFVNTSGKNAGKLSANGQKLLHNLEQAKNRDLWRV 531 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 + +L IRHVG AR+LA + S ++ I + + +L V VG IA +++ Sbjct: 532 LVALSIRHVGPTAARALATRFGS-------VDAIFSADEQ---TLAEVDGVGPTIAASVI 581 Query: 614 EFYQNP--RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 E++Q R+I A A + + + + +V TG+L+ R QE + Sbjct: 582 EWFQVDWHRSILARWA---AAGVKMAEEREELPQTLAGLTIVVTGSLEGFTRESVQEAII 638 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G S +S+KT ++ G+ GSK EKA+QLGV +++E FL LL+ Sbjct: 639 ARGGKASGSVSKKTSYVVAGEGGGSKREKAEQLGVPVIDEAAFLKLLR 686 >gi|257460489|ref|ZP_05625590.1| DNA ligase, NAD-dependent [Campylobacter gracilis RM3268] gi|257441820|gb|EEV16962.1| DNA ligase, NAD-dependent [Campylobacter gracilis RM3268] Length = 668 Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 229/690 (33%), Positives = 357/690 (51%), Gaps = 76/690 (11%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY +PI D EYD L + + P+LA S P +IGG ++ K+ H Sbjct: 19 AYYTDDRPIASDEEYDELYSQAEKFEEQNPELALSYSPT---RRIGGAISEGFSKLAHGA 75 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 S+E I++ DL ++ R + + F +EPK DG + + YE G + AA Sbjct: 76 QMWSMEDIFDDADLLAWLAR-------GEKSGAQFYVEPKFDGASLNLTYEGGVLISAAT 128 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVYISKNDFLALNDEMIAVGRK 211 RGDG GEDV+ RAI ++P L IP IE+RGE I+K+DF ALNDE A G Sbjct: 129 RGDGLIGEDVTQNARAIKSVP----LQIPYAGRIEIRGETLIAKSDFDALNDERAANGES 184 Query: 212 PYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270 ++NPRNAA+G LR+L+ + R L F G+G+ S FA ++++ +R LGF + Sbjct: 185 LFSNPRNAAAGSLRQLDSAIVAKRKLKFIPWGVGEHSLSFAL-HSQIMEFVRSLGFLRDE 243 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 R + I + Y + S+R++ +DG+V +V+E S Q+G + PR+M+++KF Sbjct: 244 FCRICKSASEIRAAYEALHSMRASKDLMLDGMVIRVNELSKCAQMGYTVKFPRFMVAYKF 303 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 + TRL +I++Q+GRTG +TPVA + VNI GA ++NATLHN D I L +M+ Sbjct: 304 PAVEKVTRLREINLQVGRTGAVTPVAVVYSVNIDGANVSNATLHNFDEIARLG----LMK 359 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 D V + R+G+VIPK+ + R S P CP+C +++ + G Sbjct: 360 -------NDFVGIIRSGDVIPKITSVYKQRRDGTQSEISRPDRCPVCGEKLLDE-----G 407 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 L+ +C L C A+ + L +F S+ NIEGL + F+S I DI Sbjct: 408 ALI---KCQ-NLDCKARVIGSLIYFCSKKCMNIEGLSDATITQLFESG----KISKIGDI 459 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + L + ++ GF D ++NL +IN +N LERFI SLGI H+G AR + Sbjct: 460 YAL------GAQDLADLEGFADKKISNLLGAINASKNAPLERFIASLGIEHIGEVAARKI 513 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWL-----SLIRVPLVGDIIAQAIVEFYQ-NPRNICA 624 A + DWL ++R+ G+ +A+++ EF + N I Sbjct: 514 AAAF-----------------GQDWLDASEDEILRLEGFGEAMARSLAEFCKINREKILN 556 Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 + ++ +P + + V S ++ +V TGTL + R + + + +GA V +S K Sbjct: 557 LSEIIAPRAPQM----QTVKSAFTDRSVVITGTLSR-PRDEFKAKLLAMGAKVQGSVSAK 611 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TD ++ G GSKL+KA+ LGV++++E +F Sbjct: 612 TDFVLAGAEAGSKLQKARSLGVRVIDESEF 641 >gi|329116783|ref|ZP_08245500.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020] gi|326907188|gb|EGE54102.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020] Length = 654 Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 222/712 (31%), Positives = 369/712 (51%), Gaps = 67/712 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E+ KEL+ L + YY P + D +YD L + +P+ A + P Sbjct: 1 MEKRIKELTDLLNQYRLE---YYTNDSPSVSDQDYDRLYHELVQLEEEYPEYALKDSPT- 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 +GG + K H+ P SL+ ++ E+L F R+ K + S + E K Sbjct: 57 --QAVGGLVLTGFEKYQHAYPLYSLQDAFSPEELYSFDRRV-----KAEFPSAEYVAELK 109 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I++ Y++GK V A RGDG GE+++ I+ I IP L I I VRGE Y+ Sbjct: 110 IDGLSISLNYQEGKLVTGATRGDGSIGENITENIKRIKDIPHQLDQAID--ITVRGEAYM 167 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFA 251 S+ F +N E G +ANPRNAA+G LR+L+ + + + +F T E+ Sbjct: 168 SRKSFQQINLERQENGETEFANPRNAAAGTLRQLDTSIVAKRELASFLYQEASPTDEL-- 225 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q +L+K+ LGF VN + I + ++ R L YDIDG+V KV+ ++ Sbjct: 226 -SQELVLEKLDNLGFSVNPRRLITQSMDEIWDFIQAIEIERDQLSYDIDGIVIKVNSLAM 284 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG ++PRW +++KF ++ + +D +GRTG++TP A L PV + G ++ A Sbjct: 285 QEELGFTIKAPRWAVAYKFQAEEKEAEIRSVDWTVGRTGVVTPTANLTPVKLAGTTVSRA 344 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN DYI+ +DIR+GD V+V +AG++IP V+ ++ ++R D++P P Sbjct: 345 TLHNVDYIE-----------HKDIRIGDTVIVYKAGDIIPAVLRVVTDKRRDDSEPMPIP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S CP CQS ++ + A RC L C L+HF SR+A NI GLG + Sbjct: 394 SLCPSCQSELIHFEDE------VALRCINPL-CPNLIQRSLEHFASRNAMNISGLGPAIV 446 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + A I ADI+ L Q + + G + S L +I + S + Sbjct: 447 EKLYS----ANLIHDVADIYKLNLEQLLA------LEGIKEKSAEKLLTAITNSKKNSAD 496 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + +F LGIRHVGA+ +R L + + +I +++ N ++ + ++ +G +IA++ Sbjct: 497 KLLFGLGIRHVGAKASRILLEEF-------GDIESLVEANQEE---ISQIDGLGTVIAKS 546 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK------KLVFTGTLQKIQRHK 665 I +++ + LL E+ S G + + +I+ +V TG L+++ R++ Sbjct: 547 IARYFEK----AEAQLLLSELK-SAGLNLSYLGKKIDKTAKLFGMTVVLTGKLEQLTRNE 601 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A+ + LGA V++ +S+KTD+++ G + GSKL+KA LG++I +E+ + L Sbjct: 602 AKAKLESLGAKVTSSVSKKTDLLVAGSDAGSKLDKASTLGIRIEDEDWLVNL 653 >gi|296273134|ref|YP_003655765.1| DNA ligase, NAD-dependent [Arcobacter nitrofigilis DSM 7299] gi|296097308|gb|ADG93258.1| DNA ligase, NAD-dependent [Arcobacter nitrofigilis DSM 7299] Length = 648 Score = 340 bits (871), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 219/682 (32%), Positives = 364/682 (53%), Gaps = 57/682 (8%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P D EYD L R C A P L+ PN P ++GG + K H Sbjct: 19 AYYVEDNPQASDEEYDKLSRECLAYEQENPSLSH---PNSPNKRVGGFVLEGFEKAAHLS 75 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 S E ++N +L +I R +K + ++ F EPK DG + + YE G A Sbjct: 76 RMWSQEDVFNTVELEDWIKR-----AQKVNTNLEFYCEPKFDGASLNLIYENGVLKQAIT 130 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GEDV+ ++ I +IP L + +IE+RGE+ I K DF +N+E G + + Sbjct: 131 RGDGSIGEDVTNNVKTIHSIP--LQIKEQSLIEIRGEIVIKKADFEKINEERAKNGEQLF 188 Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L+PT R L F V G+G+ S F K EM++ + LGF Sbjct: 189 ANPRNAAAGSLRQLDPTVTAKRKLFFNVWGIGQHSLDFTK-HSEMMEYVYSLGFVHPPMT 247 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 + T GI Y+++ + R+++ +DG+V K+++ Q++LG + PRW ++KF Sbjct: 248 TKTTTVEGIEELYHKIIASRNSITMMLDGMVIKINDIETQEELGYTVKFPRWSCAYKFPA 307 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + +T + DI Q+GRTG++TPVA +EP I G+ + A+LHN D I L Sbjct: 308 VEKTTTIKDIIQQVGRTGVITPVAVVEPTLIDGSTVERASLHNYDEIARL---------- 357 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 D+R+ D+V++ ++G++IPK+ + V R + + P+ CP C+S ++ + G L Sbjct: 358 -DLRINDQVIIIKSGDIIPKITKVFVERRDGTQEKITRPTLCPKCRSELLDE-----GTL 411 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 + +C L C A + + +F S++ NI+GLG + ++ + E + I D+++ Sbjct: 412 I---KCQ-NLDCPAIIVNSIIYFASKNCMNIDGLGNKIVETLVR-EKKIYDI---LDLYS 463 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L+ +EN+ GF + + NL ++I K + SL R I +LGI H+G ++ + Sbjct: 464 LKYED------LENLEGFKEKKINNLLNAIEKTKANSLHRVINALGIEHIGEVASKQIC- 516 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 F ++ NI D+ SL+ + +G+ +A + VEF + + V L+ + Sbjct: 517 -----LEFGLDVVNI------DFDSLVALDGIGEQMANSFVEFMRVNEEL--VSKLIATI 563 Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 +P++ + + + K +V TGT+ + R + ++ + LGA VS+ +S+KTD +I G+ Sbjct: 564 NPTVEEKIEVSENAFKGKTVVITGTMS-VSRGEVKKQLEALGAKVSSSVSKKTDYVIYGE 622 Query: 693 NPGSKLEKAQQLGVKIMNEEQF 714 + GSK +KA +L VK +NEE+ Sbjct: 623 DAGSKYDKAIELNVKTINEEEM 644 >gi|294054681|ref|YP_003548339.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221] gi|293614014|gb|ADE54169.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221] Length = 711 Score = 340 bits (871), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 221/703 (31%), Positives = 365/703 (51%), Gaps = 49/703 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KE++ L I HD YY+ ++P I D YD LK R A+ P+L + + P + Sbjct: 54 KEIAQLRAAIEKHDRLYYKKAQPEIDDQAYDRLKARLTALESQNPEL---DFGSSPTQTV 110 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + S H P LSL+ +N ++L F R+ + + + ++ F +EPKIDG Sbjct: 111 GDDRLESFESYVHRKPMLSLDNTYNRDELIDFGKRLEK---RFPNQALNFLVEPKIDGVA 167 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +++ YE+G+F+ A RG+G G+D++ +R I +P + P+I+EVRGE+Y+ ++F Sbjct: 168 VSLTYEEGQFIRAVSRGNGSEGDDITQNVRHIEGLPLQIE-EAPDILEVRGEIYMRHSEF 226 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQY 255 +N A G YANPRN A+G ++ LNP + R L+ ++G+G + F + Q Sbjct: 227 ERINAVREAAGEPLYANPRNLAAGTIKLLNPNEARARRLDIVLYGIGACEPQNYFVR-QT 285 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E+ Q+++ FPV ++ + E+ S R Y DG V K+D+F+LQ+Q Sbjct: 286 EIQQRLKEWHFPVLEKYWLSSNIVEAWASIEELDSRRQRFTYPTDGAVVKLDDFALQQQA 345 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +++PRW I++KF ++A T L +I +QIGRTG +TPVA LEPV + G ++ ATLHN Sbjct: 346 GFTSKAPRWAIAYKFEAERAETLLKEISLQIGRTGAVTPVAILEPVQLAGTTVSRATLHN 405 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED I+ +DIR GD VLV++AGE+IP+V+ + +++R D+ F F Sbjct: 406 EDEIR-----------RKDIRPGDTVLVQKAGEIIPQVLGVNISKRPADSTTFDFAQHLS 454 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 RD ++V+ H +Q L+HF SR +IE LG ++ Sbjct: 455 SLGIDAERDPGEAVWRIVSKHDPI-------RQQRALQHFASRTCMDIENLGTAVVEQLV 507 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 R AD++ LQ K F + S NL +++ + + + I Sbjct: 508 SRG----LARTVADLYQLQLDDFLQLEK------FAEKSAQNLVEALEASKQRPVWQLIH 557 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGI HVG + A+ L ++ S + +A +++ L I +G I+AQ+I + Sbjct: 558 GLGIPHVGKQSAKDLEAHFESL--------DALARASEEQLEAIDG--IGSIMAQSIHAW 607 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 +++ N ++ L + + + K +V TGTL + R++A + G Sbjct: 608 FEDSENAELLDRLRTYGLNFRSQRSEPTGGALAGKTVVLTGTLPTMTRNEATALIEAAGG 667 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S+ +S+KTD ++ G+ GSK KA++LGV I++E+ F L+ Sbjct: 668 RTSSSVSKKTDYLLTGEAAGSKYTKAEKLGVPILDEDAFRALI 710 >gi|78185772|ref|YP_378206.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9902] gi|123743489|sp|Q3AUH7|DNLJ_SYNS9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78170066|gb|ABB27163.1| DNA ligase (NAD+) [Synechococcus sp. CC9902] Length = 680 Score = 339 bits (870), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 221/697 (31%), Positives = 352/697 (50%), Gaps = 51/697 (7%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P + D+ YD L + + P L ++ P ++GG V H I Sbjct: 21 AYYVLDTPTMEDAVYDRLYQELLELEQNTPSLKTADSPT---QRVGGAPAEGFTSVEHRI 77 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 LSL+ +N +DL + R+ R + + + E KIDG + + Y G AA Sbjct: 78 GLLSLDNAFNRDDLSAWNERLLRAIDRPLGSPLDLVSELKIDGNALALSYRNGVLERAAT 137 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG GE+++A +R I IP L L N PE +E+RGE +I N F +N E + G Sbjct: 138 RGDGQRGEEITANVRTISAIPLRLRLDNPPEWVEIRGEAFIPDNTFAEINAERESRGEAL 197 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNA +G LR+L+P + R L+FF + L ++ Q++ L + GF VN Sbjct: 198 FANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPTQEQPASQWDALTWLENAGFRVNPN 257 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 I + + + R LPY DG+V K++ LQ + G +SPRW I+ KF Sbjct: 258 RALCADLADINRFSDHWEQARHDLPYATDGVVVKLNNLVLQDEAGFTQKSPRWAIALKFP 317 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++A +RLL + +QIGRTG++TPVA EPV + G ++ ATLHN D I L Sbjct: 318 AEEAPSRLLRVVVQIGRTGVITPVAEFEPVALAGTSVSRATLHNADRIAEL--------- 368 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+ +GD ++V++AGE+IP+VV ++ R A P P CP C S +VR+ G Sbjct: 369 --DLHLGDTIVVRKAGEIIPEVVRVLPELRPSSATPVQLPEHCPECGSNLVRE-----GD 421 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 VA RC +C A L+H+VS+ A +++GLG + ++ D +R AD++ Sbjct: 422 EVAT-RCVNS-SCPAILRGGLRHWVSKGALDVDGLGSKLIEQLV---DQGL-VRSIADLY 475 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L S ++ G+ S NL +++ R S R ++ LGI H+G A+++ Sbjct: 476 RLDAALLGSLDRM------GERSANNLIEALKLSRQRSWARQLYGLGIHHIGEVSAKAIT 529 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL--- 628 + + N+++ + + +G +AQ++ +++ NP N ++ L Sbjct: 530 AEF-------SDSNSLMEAACTAPERITAIYGIGTELAQSLQQWFSNPANQHLLDDLRSQ 582 Query: 629 -----LKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 L + P GR S + ++ V TGTL + R +A+E + G VS +S Sbjct: 583 GFRFALDDNDP--GRLGAAASEQHLKGLTFVLTGTLPTLSRSEAKERIETCGGKVSGSVS 640 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +KTD ++ G+ GSKL KA LG+KI++E++ +L+ Sbjct: 641 KKTDYLVAGEEAGSKLTKATTLGIKILDEDRLQAMLK 677 >gi|307704876|ref|ZP_07641768.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597] gi|307621589|gb|EFO00634.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597] Length = 652 Score = 339 bits (870), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 219/685 (31%), Positives = 363/685 (52%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+PD ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V A R Sbjct: 76 LYSLQDAFSREELEAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSVGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q ++L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A + I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAESMDEIWNFIQEVGEERENLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRFSE-EKLDIPTNCPSCDSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 L K E+ L G + S LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RL---------KEEDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +++ S + AQ D + + +G +IA+++ ++ + + Sbjct: 513 LLLQHFHSIETLAQA----------DPEEVASIESLGGVIAKSLQTYFATEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 L+E ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LREAGVNLAYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++ G + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646 >gi|149003762|ref|ZP_01828594.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69] gi|237650785|ref|ZP_04525037.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI 1974] gi|237822373|ref|ZP_04598218.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI 1974M2] gi|147758208|gb|EDK65210.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69] Length = 652 Score = 339 bits (870), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 363/685 (52%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 76 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N +Q + +A + +G +IA+++ ++ + + Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646 >gi|315223028|ref|ZP_07864907.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211] gi|315187978|gb|EFU21714.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211] Length = 652 Score = 339 bits (870), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 217/680 (31%), Positives = 355/680 (52%), Gaps = 55/680 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L + +P+L +++ P +++GG++ K H P Sbjct: 19 YYTTDNPTVSDSEYDRLYHELLDLEQQYPELVQADSPT---HRVGGKVLEGFEKYQHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F RI +KD + + E KIDG I++ YEKG V A R Sbjct: 76 LYSLQDAFSREELEAFDVRI-----RKDFPKVSYLCELKIDGLSISLMYEKGILVAGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+++ ++ + IP VL + + VRGE Y+ ++ F +N G +A Sbjct: 131 GDGSVGENITENLKRVKDIPLVLPTAVN--LTVRGECYMPRSSFDRVNRLRQENGEPEFA 188 Query: 215 NPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274 NPRNAA+G LR+L+ T I N + S A Q +L ++ GF VN Sbjct: 189 NPRNAAAGTLRQLD-TAIVAKRNLATFLYQEASPTSATSQEAVLNQLSKNGFSVNERHIL 247 Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334 A++ + + ++ R LPYDIDG+V KV++ +Q++LG ++P+W I++KF ++ Sbjct: 248 AHSMDEVWQFIGQIAQERDQLPYDIDGVVIKVNDLVMQEELGFTVKAPKWAIAYKFPAEE 307 Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394 +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI +D Sbjct: 308 KEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEKD 356 Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 IR GD V+V +AG++IP V+ ++ ++R + + P CP C S ++ + Sbjct: 357 IRKGDTVIVYKAGDIIPAVLQVVESKRQSE-EKLEIPKNCPSCNSELIHFEDE------V 409 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514 A RC C AQ E L HF SRDA NI GLG ++ F + + D+ + Sbjct: 410 ALRCINP-RCPAQIKEGLIHFASRDAMNITGLGPAVVEKLFDQQ-------LVNDVAGIY 461 Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 R ++EN F + S LY +I + S E+ +F LGIRHVG++ ++ L K++ Sbjct: 462 RLTVEDLLQLEN---FKEKSANKLYTAIQASKENSAEKLLFGLGIRHVGSKASQILLKHF 518 Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRNICAVEALLKEVS 633 + A+ IA + +G +IA+++ ++ Q +I E LKE Sbjct: 519 HDLEQLAKAEKEEIAALDS----------LGMVIAESLSSYFAQEGTHILLSE--LKEAG 566 Query: 634 PSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + + V+++ + +V TG L+++ R +A++ + LGA V++ +S+KT +++ G Sbjct: 567 LNFTYLGEKVAADAVLSGLTVVLTGKLERLNRSEAKKKLESLGAKVTSSVSKKTSLVVAG 626 Query: 692 DNPGSKLEKAQQLGVKIMNE 711 + GSKL KAQ+LG+ I +E Sbjct: 627 ADAGSKLTKAQELGIDIRDE 646 >gi|307747505|gb|ADN90775.1| DNA ligase [Campylobacter jejuni subsp. jejuni M1] Length = 647 Score = 339 bits (870), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 222/689 (32%), Positives = 367/689 (53%), Gaps = 64/689 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYDAL R AF + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDALIREL----RAFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L+++W++ED+ F +R W K+ F +EPK DG + + YE GK V A Sbjct: 74 ----LKRMWSMEDV--FDESEFRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++ E IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T IT R L F+ GLG+ + F K E++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGLGENTLNFTK-HSEVMQFIRELGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 VR ++ Y+E+ ++R P +DG+V ++D+ +L ++LG + P++M + KF Sbjct: 244 VRLCVNLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+++ D V V R+G+VIPK+ + + R S P CP CQS ++ + G Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKDRREGLEMEISRPKLCPTCQSELLDE-----GT 407 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ +C + C + + + HFVS+ NI+GLG+ ++ +K + I Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ + E + GF + + NL ++I + R L RFI +LGI H+G A+ L+ Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +F +E + + + + G+ +A ++ EF + R ++ K Sbjct: 514 ------LSFGKE------WHKQSFEAYANLEGFGEQMALSLCEFTRVNRT--RIDEFYKL 559 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ I + E I K V TGTL + R + + + +LG VS +S+KTD ++ G Sbjct: 560 LNLKIEKLEIKSDGVIFGKTFVITGTLSR-SRDEFKALIEKLGGKVSGSVSKKTDYVLFG 618 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GSKL KA++L +K ++E F L+++ Sbjct: 619 EEAGSKLIKAKELEIKCIDESAFNELVKE 647 >gi|148994566|ref|ZP_01823725.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68] gi|168488962|ref|ZP_02713161.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195] gi|147927160|gb|EDK78197.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68] gi|183572496|gb|EDT93024.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195] gi|332073479|gb|EGI83958.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17570] Length = 652 Score = 339 bits (870), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 363/685 (52%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 76 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRSLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N +Q + +A + +G +IA+++ ++ + + Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646 >gi|212550985|ref|YP_002309302.1| NAD-dependent DNA ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|254781545|sp|B6YRR9|DNLJ_AZOPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212549223|dbj|BAG83891.1| NAD-dependent DNA ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 663 Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 219/709 (30%), Positives = 367/709 (51%), Gaps = 56/709 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ +L QEI + YY +PI+ D E+D + + + +P+ D P + Sbjct: 4 KQKIDNLRQEIDNWNYRYYVIYQPIVSDFEFDKKLKELEKLEAQYPEYY---DYYSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 IG ++N + ++ H P LSL ++ E + F RI +K + + E K DG Sbjct: 61 IGNDINNNFAQINHIYPMLSLSNTYSWEGINDFYNRI----KKILNENFVIACELKYDGV 116 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 I++ YE G + A RGDG +G+DV+ IR + +IP ++ N P E+RGE+ Sbjct: 117 SISLIYESGLLLRAVTRGDGTTGDDVTTNIRTVKSIPLKLYGNNYPRFFEIRGEIVFPWA 176 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F +N E I P+ANPRNAA+G L+ LNP ++ R L+ +++ L + + Y Sbjct: 177 AFNKINKERIENSEPPFANPRNAAAGTLKTLNPQVVSQRNLDAYLYQL-LGDNLSSDSHY 235 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ + GF V+N ++ T I ++ N + +LP+ +DG+V KVD Q L Sbjct: 236 ENLQLAQGWGFKVSNIIKCCKTIDEIENFINYWGKWKKSLPFAVDGVVLKVDSIRQQSLL 295 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G A+SPRW I++KF + T L +D Q+GRTGI+TP+A LEPV + G ++ A+LHN Sbjct: 296 GRIAKSPRWAIAYKFQSETVKTTLHSVDFQVGRTGIITPIANLEPVLLSGTIVKRASLHN 355 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP-DAQPFSFPSFC 434 ED I L D+ +GD+ V++ GE+IPK+ I R + +FP C Sbjct: 356 EDIINAL-----------DLHIGDQCYVEKGGEIIPKITGINKEARLTFGNKAVNFPKNC 404 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + ++R N A+ C C Q + HF SR A NI +G++ ++ F Sbjct: 405 PACNTPLIRFQNE------TAYYCPNYTQCKPQIKGMITHFASRKAMNI-NVGEETIETF 457 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG---FGDVSVTNLYDSINKRRNISLE 551 ++ A +R AD++ + KI++IL + + S N +S+ + + + E Sbjct: 458 YR----AGLVRDIADLYEI---------KIDDILQLKRWAEKSAINFVESVQQSKQVPYE 504 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R ++ LGI VG +A+ LAK + + + + IA+N L + +G+ IAQ+ Sbjct: 505 RVLYGLGIHFVGEVVAKRLAKAFPTIEQLS------IANNE----QLTTIDGIGNQIAQS 554 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +++++ N N+ + L + + +++ K + +G +K R K +E + Sbjct: 555 VIQYFSNENNLQLIRRLKLYGLQLFTIQKIFIDNKLAGKTFIISGIFRKYSRDKYKELIE 614 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQ 719 G + LS KTD I+ G N G KL KAQ+ G+KI++E++FL +++ Sbjct: 615 NNGGKNVSSLSAKTDFILSGVNMGPVKLIKAQRFGIKIISEDEFLKMIE 663 >gi|183981708|ref|YP_001849999.1| NAD-dependent DNA ligase LigA [Mycobacterium marinum M] gi|254781377|sp|B2HIF0|DNLJ_MYCMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183175034|gb|ACC40144.1| DNA ligase [NAD dependent] LigA [Mycobacterium marinum M] Length = 687 Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 229/714 (32%), Positives = 367/714 (51%), Gaps = 55/714 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ L +++ H YY P+I D+E+D L RR +A+ +P+L P+ P + Sbjct: 7 RQWQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPEL---RTPDSPTQLV 63 Query: 79 GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + F+ V H LSL+ +N E+L + RI+ +S + E KIDG Sbjct: 64 GGAGFATEFEPVEHLERMLSLDNAFNTEELTAWAGRIH----ADVGDSAAYLCELKIDGV 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 +++ YE G+ A+ RGDG +GEDV+ R I +P LS + +PE++EVRGEV+ Sbjct: 120 ALSLVYEGGRLTRASTRGDGRTGEDVTLNARTIEDVPERLSHSEDHRMPEVLEVRGEVFF 179 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG T Sbjct: 180 RVADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHTEGFRPA 239 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ ++ G PV+ G+ + Y+ E R + ++IDG+V KVD+ Sbjct: 240 TLHQAYLALQAWGLPVSQHTTLVADLAGVQERIDYWGEH---RHEVDHEIDGVVVKVDDV 296 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + Sbjct: 297 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVA 356 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN +K R G + +GD V++++AG+VIP+V+ +V+ R + F Sbjct: 357 QATLHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFV 405 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + K G A RC +C Q ER+ H SR+A +IE LG Sbjct: 406 MPTTCPECGTPLAPE---KEGD--ADIRCPNTRSCPGQLRERVFHVSSRNALDIEMLG-- 458 Query: 490 QLDFFFKSEDPAFSIRI---PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 +++ S R+ D+F L + T G + L +++K + Sbjct: 459 -----YEAGAALLSARVIGDEGDLFGLTEEELLRTDLFRTKAGDLSANGRRLLANLDKAK 513 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L R + +L IRHVG AR+LA + S I+ I++ + L V VG Sbjct: 514 AAPLWRVLVALSIRHVGPTAARALATEFGS-------IDAIVSATTE---QLAAVEGVGP 563 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IA A+ E++ + VE + +V + +V TG+L R +A Sbjct: 564 TIASAVSEWFTVDWHREIVEKWRAAGVRMADERDDSVPRTLAGVTVVVTGSLPGFSRDEA 623 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +E + G + +S+KT ++ GD PGSK +KA +LGV I++E+ F LL+Q Sbjct: 624 KEAIVTRGGKAAGSVSKKTSYVVAGDAPGSKYDKAVELGVPILDEDGFRKLLEQ 677 >gi|330751993|emb|CBL80506.1| DNA ligase [uncultured Polaribacter sp.] Length = 665 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 216/705 (30%), Positives = 368/705 (52%), Gaps = 54/705 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L ++++ H+ YY I D ++D + + + P S N P ++ Sbjct: 5 EKIKELREQLNNHNYNYYVLDNATISDFDFDRTLKELEKLEKENPIFFNS---NSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + + + H SL+ ++ EDL + R+ + + + FT E K DG Sbjct: 62 GGTVTKNFNTIVHKNRMYSLDNSYSKEDLLDWEKRVEKVLGVSE---LEFTCELKFDGAS 118 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I + YE G+FV A RGDG G++V+ I+ I +IP + E+RGE+ + + F Sbjct: 119 INLTYENGQFVKAVTRGDGFQGDEVTNNIKTIRSIPLSIKEEFISNFEMRGEIVLPIDGF 178 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 + +N+E I G + Y NPRN ASG L+ + ++ R L+ ++ + T E K +E Sbjct: 179 IKMNEERILNGEEVYRNPRNTASGSLKLQDSGEVAKRPLDCLLYQM-VTEERKYKTHFES 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 L+ R +GF V + A + + + N + R+ LPY+ DG+V KV+ Q++LG Sbjct: 238 LENARKVGFKVPKTITLAKSIDAVFDFVNYWDAKRNDLPYETDGIVIKVNNLQQQEELGY 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A++PRW I++KF Q ST L +I Q+GRTG +TPVA L PV + G + A+LHN D Sbjct: 298 TAKAPRWAIAYKFKAAQVSTILNEITYQVGRTGAITPVANLNPVQLAGTTVKRASLHNAD 357 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ L DIR D V V++ GE+IPK++ + +R ++ P + + CP C Sbjct: 358 QIERL-----------DIREKDTVFVEKGGEIIPKIIAVDHTKRSENSAPTMYATNCPEC 406 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + +VR A H C C+ Q R++H++SR A +I+GLG + +D K Sbjct: 407 DTALVRTEGD------AKHYCPNEFGCAPQITGRIQHYISRKAMDIDGLGGETVDLLRKE 460 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 I+ AD++ L Q ++ + S N+ I K + I E+ +F+L Sbjct: 461 G----LIQNYADLYDLNVAQIIPLERM------AEKSAQNMISGIEKSKEIPFEKVLFAL 510 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GIR VG +A+ LAK++ S I++++ ++ LI+ +GD IAQ+I++F Sbjct: 511 GIRFVGETVAKKLAKHFKS-------IDHLMTATFEE---LIKADEIGDRIAQSILDFSS 560 Query: 618 NPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + NI + L EVS ++ ++ + ++ + V +G ++ R++ ++ + Sbjct: 561 DLGNIQLINRLKSYGLQLEVSAAVLENQTEI---LQGQIFVVSGVFYQMSRNELKKAIED 617 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716 G VS+ +S+KT+ I+ GDN G SKL KAQ LG+ I++E+ F++ Sbjct: 618 NGGKVSSSISKKTNFIVAGDNMGPSKLTKAQDLGISIISEQDFIY 662 >gi|237785838|ref|YP_002906543.1| NAD-dependent DNA ligase LigA [Corynebacterium kroppenstedtii DSM 44385] gi|237758750|gb|ACR18000.1| DNA ligase [Corynebacterium kroppenstedtii DSM 44385] Length = 686 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 223/725 (30%), Positives = 365/725 (50%), Gaps = 59/725 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + +SL ++ +H D YY S+P+I D+E+D L + + P+LA++ P + Sbjct: 6 QAQWNSLAADVRHHRDLYYN-SEPVISDAEFDHLFKTLQDLEADHPELAKN---GSPTEE 61 Query: 78 IGGEM----NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 +G + S +VT + P +E++++++++ F W + + T E K Sbjct: 62 VGAPVPTPTETSSAEVTFA-PVRHIERLYSLDNV--FSKSELLEWLHRTPAPTYLT-ELK 117 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRG 189 IDG I + Y G+ V AA RGDG +GED++ R I IP+ +S +PE++EVRG Sbjct: 118 IDGLSIDLVYRDGELVSAATRGDGLTGEDITPNARTISDIPQTISPTDEYPVPELVEVRG 177 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EV+I +F +N + + GRKP+ANPRNAA+G LR+ NP + R L+ HG+G Sbjct: 178 EVFIGVEEFAVINADRVEQGRKPFANPRNAAAGSLRQKNPAETAKRNLSMICHGIGAREG 237 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q++ + GF V+ ++ + +++ R +++DGLV KVD+ Sbjct: 238 WEPSTQHDAYTALAAWGFRVSPYTKRVTSADEVIAQMEYWGEHRHDATHEMDGLVVKVDD 297 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q+ LGE +R+PRW I++K+ ++ T L DI I IGRTG T A L+PV + G+ + Sbjct: 298 LAEQEDLGETSRAPRWAIAYKYPPEEVVTTLRDIRIGIGRTGRATTYAVLDPVLVAGSTV 357 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN + + + +GDRV +++AGEVIP+V+ + + R +PF Sbjct: 358 ARATLHNPSEVH-----------DKGVLIGDRVTIRKAGEVIPEVLGPVADARDGSEKPF 406 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 F + CP C + +V+ A RC C Q L R+ + R AF+I+ LG Sbjct: 407 VFSTVCPECGTPLVQAKADD-----ADWRCPNTQGCPGQLLARMTYLAGRSAFDIDALGV 461 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQ----RRQQTSTTKIENILGFGDVSVTNLYDSINK 544 + +S ++ +++F L R TTK I G + NL ++ Sbjct: 462 SGIQDLIRS----GALTNESELFDLDESHLRLTSVFTTKAGKINATGKALLKNLEEA--- 514 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 ++ L R I +L IRHVG AR+LA Y S + L R+ V Sbjct: 515 -KSTELWRVIVALSIRHVGPTAARALATKYGSLEAIRSASEE----------ELARIDGV 563 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G IIA ++ ++ +I V+A ++ +E +V TGTL+ R Sbjct: 564 GSIIAASLCSWFAVDWHIKIVDAWAAAGVRMEDDKQQAQPQTLEGTTVVVTGTLEDFTRD 623 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTT 724 A+E + G + +S+KT+ ++VG N GSK KA+ LG++I++E+ F LL+ T Sbjct: 624 SAKEAIISRGGRAAGSVSKKTNYVVVGANAGSKETKARDLGLRILDEDGFKELLE----T 679 Query: 725 LRIHD 729 R+ D Sbjct: 680 GRVSD 684 >gi|291299865|ref|YP_003511143.1| DNA ligase NAD-dependent [Stackebrandtia nassauensis DSM 44728] gi|290569085|gb|ADD42050.1| DNA ligase, NAD-dependent [Stackebrandtia nassauensis DSM 44728] Length = 749 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 236/769 (30%), Positives = 367/769 (47%), Gaps = 98/769 (12%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + AR+ + L EI H Y++ P I D+EYDAL R AI A P LA + P+ Sbjct: 16 DAARERHTKLAAEIDRHRQLYHRDDAPQISDAEYDALMRELLAIEEAHPVLATQDSPS-- 73 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG+++ V H+ SL+ ++ E+L ++ R+ + + E KI Sbjct: 74 -QQVGGDVSELFASVRHAERLYSLDNAFSPEELTAWVERV-----TAEVPGEAYLCELKI 127 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGE 190 DG + + YE G V A RGDG +GED++ +R I +IP L +PE +E+RGE Sbjct: 128 DGLAVNLTYENGVLVRGATRGDGTTGEDITPNVRTIASIPEKLKGTKKYPVPEFVEIRGE 187 Query: 191 VYISKNDF--------------LALNDEMIAVGRK-----P-YANPRNAASGILRRLNPT 230 V++S F A N+E A G++ P YANPRNAA+G LR+ +PT Sbjct: 188 VFMSTESFEKLNADRLAENERITAANEERKAEGKRLQKLLPLYANPRNAAAGSLRQKDPT 247 Query: 231 -DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289 +R L+ V+G G Q + ++ G P ++ + +T G+ Y Sbjct: 248 ITASRALSMTVYGFGARRGFEPTHQSQGYAALKAWGLPTSSYFKVLDTVEGVTEYIEHYG 307 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 R + ++IDG+V K+D+ ++Q++LG R+PRW I++K+ ++ +T L DI + +GRT Sbjct: 308 EHRHDIEHEIDGVVIKIDDIAVQRRLGSTTRAPRWAIAYKYPPEEVTTTLRDIKVSVGRT 367 Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 G TP A LEPV + G+ + ATLHN+D +K + + +GDRV++++AG+V Sbjct: 368 GRATPYAVLEPVRVAGSEVEFATLHNQDIVKA-----------KGVLIGDRVIIRKAGDV 416 Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 IP+V+ + R D F PS CP C + + R ++ L RC +C AQ Sbjct: 417 IPEVLGPVEGARTGDEHEFVMPSNCPECGTEL-RQMSEGDIDL----RCPNARSCPAQLR 471 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQRRQ----------- 517 ERL + R +I+GLG + +P + D+F L Q Sbjct: 472 ERLSYLTGRSCLDIDGLGYVACTALVQPLEPKQPPLADEGDLFNLTMEQLLPIKSLVLDP 531 Query: 518 -------QTSTTKIENILGFG------DVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 T K + + F T + + I + L R I L IRHVG Sbjct: 532 DSGLPKKDPKTGKDKEVTYFATQDGAPKAGATKMLEGIEAAKQQELWRIINGLSIRHVGP 591 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 AR+LA E ++ A + D L V VG IA A+ +++ ++ Sbjct: 592 VAARALAT----------EFGDLDAIRDADEERLAAVDGVGPTIATAVKQWFAEDWHVEI 641 Query: 625 VEAL------LKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 +E E P G RH ++ +V TG+L+ R A E V G V Sbjct: 642 LEKWRAAGVRFVEERPEAGERHLAGLT-------VVITGSLEGWTRDGAAEAVRVRGGKV 694 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 S +S+KT ++VGD+PGSK +KA +LGV I++ E F LL + +R Sbjct: 695 SGSVSKKTSFVVVGDSPGSKYDKAVKLGVPILDTEGFATLLSEGPDAVR 743 >gi|330995784|ref|ZP_08319681.1| DNA ligase [Paraprevotella xylaniphila YIT 11841] gi|329574514|gb|EGG56079.1| DNA ligase [Paraprevotella xylaniphila YIT 11841] Length = 669 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 223/708 (31%), Positives = 366/708 (51%), Gaps = 55/708 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++++ L E+ H+ YY + P I D E+D + R + A P+ +DP+ P Sbjct: 4 EVKEQIERLRSELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEF---DDPDSPT 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++N +V H P LSL +N +++ F R+ + + E K D Sbjct: 61 RRVGSDLNQEFVQVPHRYPMLSLSNTYNKQEVADFYERVRSGLEGE---PFEICCEMKYD 117 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194 G I++ YE+G+ V A RGDG G+DV+ ++ I IP L+ N PE E+RGE+ + Sbjct: 118 GLSISLTYEQGRLVRAVTRGDGVQGDDVTENVKTIRCIPLRLNGNGYPEEFEIRGEILMP 177 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 F ALN E +ANPRNAASG L+ N + R L+ +++ L F G Sbjct: 178 WTSFEALNREREEREEPLFANPRNAASGTLKSKNSAVVAQRKLDAYLYYLLGEHVPF-DG 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 YE LQ GF ++ G+++ T GI + + R LP DG+V KV+ Q+ Sbjct: 237 HYENLQAACSWGFKISGGMKKVTTLQGIYDFIDYWDVERKNLPVATDGIVLKVNSQRQQR 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA ++PV + G ++ ATL Sbjct: 297 ALGYTAKSPRWAIAYKFQAERARTRLNAVTFQVGRTGTVTPVANMDPVQLAGTVVRRATL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS-FPS 432 HN D ++ L D+ +GD V V++ GE+IPK+V + ++ R + P + F + Sbjct: 357 HNADVMEQL-----------DLHIGDMVYVEKGGEIIPKIVGVDIDARGAETGPRAEFIT 405 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + +VR G+ AA C AC Q R++H++SR A NI+ LG + +D Sbjct: 406 RCPECGAELVR----YEGE--AAWYCPNDTACPPQIKGRIEHYISRRAMNIDSLGPETVD 459 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG--DVSVTNLYDSINKRRNISL 550 +++ IR AD++ + ++E I G G + S + SI + Sbjct: 460 DYYRRG----LIRDVADLYDI---------RVEQINGDGTREKSAQKIVRSIADSVEVPF 506 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F+LGIR VG A++LA+++ S A ++ ++++ +G +IA+ Sbjct: 507 ERVVFALGIRFVGEIAAKALARHFKSMD----------ALSSASLEDMLQINGIGVVIAE 556 Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +++ ++ N N V L K V + E + S ++ + +V +G R + + Sbjct: 557 SVIRYFANEANHDLVRRLREKGVRMELSDEELSSHSDKLSGQSIVVSGVFSLHSRDEYKA 616 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715 + Q G +S KT ++ G N G +KLEKA +LG+ I++EE+FL Sbjct: 617 MIEQHGGKNVGSISSKTSFVLAGANMGPAKLEKAGKLGIPILSEEEFL 664 >gi|254820448|ref|ZP_05225449.1| NAD-dependent DNA ligase LigA [Mycobacterium intracellulare ATCC 13950] Length = 693 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 225/712 (31%), Positives = 365/712 (51%), Gaps = 49/712 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R++ L + + H YY PII D+E+D++ A+ P+L ++ P + Sbjct: 12 EVRRQWQDLAEAVREHQFRYYIKDAPIISDAEFDSMFNELLALEERHPELRVADSPTQLV 71 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 G + + + H LSL+ +++ ++L + R+ + + + E KID Sbjct: 72 GGAGFATDFA--EAQHLERMLSLDDVFDRDELVAWSNRV----ENEVGKEPHYLCELKID 125 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEV 191 G +++ Y G+ AA RGDG GEDV+ R I +P LS P ++EVRGEV Sbjct: 126 GVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSAGKDFPAPSLLEVRGEV 185 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 + DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HG+G+T Sbjct: 186 FFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTEGFA 245 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVD 307 K Q+E ++ G PV + + + Y+ E R L ++IDG+V KVD Sbjct: 246 PKTQHEAYAALKAWGLPVAEQTARVRGLAAVEERIGYWGEH---RYDLEHEIDGVVVKVD 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ++LG +R+PRW +++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ Sbjct: 303 DVALQRRLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGST 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHN + +V R G + +GD V++++AG+VIP+V+ +V+ R + Sbjct: 363 VGLATLHN---------AAEVKRKG--VLIGDTVMIRKAGDVIPEVLGPVVDLRDGSERE 411 Query: 428 FSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P+ CP C + L P K G A RC +C AQ ER+ H R AF+IEGL Sbjct: 412 FVMPTTCPECDT----PLAPAKEGD--ADIRCPNARSCPAQLRERVFHVAGRGAFDIEGL 465 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + K+E I D+FTL T G + L D+++K + Sbjct: 466 GYEAAIALLKAE----VIADEGDLFTLTEDDLLRTELFRTKAGTLSANGRRLLDNLDKAK 521 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 ++L R + +L IRHVG AR+LA + +++ I++ + + L V VG Sbjct: 522 KVALWRVLVALSIRHVGPTAARALATEF-------GDLDAIVSASTE---RLAAVEGVGP 571 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IA A+ E++ + V+ + +V +E +V TG+L R A Sbjct: 572 TIAAALTEWFTVDWHRAIVDKWRAAGVRMADERDTSVPRTLEGLTVVVTGSLAGFSRDDA 631 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + G + +S+KTD ++ GD+PGSK +KA +LGV +++E+ F LL Sbjct: 632 KEAILARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPVLDEDGFRRLL 683 >gi|149024919|ref|ZP_01836320.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72] gi|303259779|ref|ZP_07345754.1| DNA ligase [Streptococcus pneumoniae SP-BS293] gi|303262954|ref|ZP_07348889.1| DNA ligase [Streptococcus pneumoniae SP14-BS292] gi|303264916|ref|ZP_07350832.1| DNA ligase [Streptococcus pneumoniae BS397] gi|303266897|ref|ZP_07352775.1| DNA ligase [Streptococcus pneumoniae BS457] gi|303268933|ref|ZP_07354718.1| DNA ligase [Streptococcus pneumoniae BS458] gi|147929542|gb|EDK80536.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72] gi|301794230|emb|CBW36650.1| DNA ligase [Streptococcus pneumoniae INV104] gi|302635931|gb|EFL66431.1| DNA ligase [Streptococcus pneumoniae SP14-BS292] gi|302638984|gb|EFL69444.1| DNA ligase [Streptococcus pneumoniae SP-BS293] gi|302641551|gb|EFL71913.1| DNA ligase [Streptococcus pneumoniae BS458] gi|302643595|gb|EFL73864.1| DNA ligase [Streptococcus pneumoniae BS457] gi|302645604|gb|EFL75835.1| DNA ligase [Streptococcus pneumoniae BS397] gi|332202976|gb|EGJ17044.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47901] Length = 652 Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 363/685 (52%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 76 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N +Q + +A + +G +IA+++ ++ + + Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646 >gi|294783065|ref|ZP_06748389.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA] gi|294479943|gb|EFG27720.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA] Length = 696 Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 225/706 (31%), Positives = 379/706 (53%), Gaps = 50/706 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L++++ + D YY ++ +I D E+D L + +++ +P+ ++ + P +G + Sbjct: 34 LKEDLDKYRDSYYNDNESLISDYEFDILLKELESLEEKYPEY---KEASSPTESVGASLK 90 Query: 84 LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + FK V H P LSL +NI ++ FI RI + K + + + LE K+DG I++ Sbjct: 91 ENKFKKVEHEHPMLSLANSYNIGEVVDFIERIKKRISK--EQELKYCLEVKLDGLSISLT 148 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 Y +GK V A RGDG GEDV+ I I ++ + L I IE+RGE+ + F LN Sbjct: 149 YIQGKLVRAVTRGDGFIGEDVTENILQIASVVKTLPQAID--IEIRGEIVLPLASFEKLN 206 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 E + G + +ANPRNAASG LR+L+P + R L+ + + L + ++ K E ++ + Sbjct: 207 KERLEKGEELFANPRNAASGTLRQLDPEIVKERALDAYFYFLVEADKLGLKSHSESMKFL 266 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 +G I + + R LPY+ DGLV KVDE +L ++G +++ Sbjct: 267 ESMGIKTTGIFELLENSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWDEIGYTSKT 326 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++KF Q ST L D+ Q+GRTG LTPVA LE V + G+ + A+LHN I+ Sbjct: 327 PRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNISEIQ- 385 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GDRV +++A E+IP+VV I ER + + P CP+C ++ Sbjct: 386 ----------RKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKTIEEPINCPVCNHKL 435 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R+ + +C C A+ +++FVSRDA NI GLG + ++ F D Sbjct: 436 EREEG------LVDIKCVNE-ECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFI---DLG 485 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + I+ DI+ L+ ++ ++ENI G S+ NL +SI + +N ++ I++LGI Sbjct: 486 Y-IKTVVDIYDLKNHRE----ELENIDKMGKRSIENLLNSIEESKNREYDKVIYALGIPF 540 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G ++ LAK ++ I+ +++ ++ L + +G+I A I+ F++ + Sbjct: 541 IGKVASKVLAKA-------SKNIDKLMSMTFEE---LTSIEGIGEIAANEIIVFFKKEKT 590 Query: 622 ICAVEALL-KEVSPSIGRHE---KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 V AL K + I E +N++ K +FTGTL+ R + +E + +LG Sbjct: 591 QKLVAALKEKGLKFEIAESEIKVENLNPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKN 650 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 651 LSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|305682056|ref|ZP_07404860.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266] gi|305658529|gb|EFM48032.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266] Length = 715 Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 225/724 (31%), Positives = 364/724 (50%), Gaps = 64/724 (8%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P E ++ +E L E++ H + YY + P I D+E+DAL ++ +A+ P+LA Sbjct: 12 PAETTDTQEIHQEWQRLASEVTRHRELYYNQT-PEITDAEFDALFKKLEALEADHPELAT 70 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G + S V H LSL+ +++ E+L +++ R+ ++ Sbjct: 71 ---PDSPTQQVGAPVESSFENVEHLERMLSLDNVFDEEELDEWLQRV---------DAPE 118 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPE 183 + E KIDG + + Y G AA RGDG GEDV+ + I +P L+ IP+ Sbjct: 119 YVTELKIDGLSLALVYRNGVLERAATRGDGRIGEDVTENAKVIQDVPHTLTATEEFPIPD 178 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHG 242 ++EVRGEV+I+ DF +N++ G KP+ANPRNAA+G LR+ + + R L HG Sbjct: 179 LLEVRGEVFIAVEDFAEVNEQRQKDGGKPFANPRNAAAGSLRQKDVEAVRRRKLRMLCHG 238 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF---HGIVSYYNEMKSIRSTLPYDI 299 +G T QY + + G PV++ + T H V+Y+ + R ++ Sbjct: 239 IGATEGFTPASQYHAYEALAAWGLPVSDYTKLVKTIDEVHKQVAYWEKH---RGDAVCEM 295 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DGLV KVD + Q+QLG +R+PRW I++K+ ++ T+LLDI +GRTG +TP A +E Sbjct: 296 DGLVVKVDSIAEQRQLGATSRAPRWAIAYKYPPEEVQTKLLDIHEGVGRTGRVTPYAVME 355 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV++ G+++ ATLHN+ +K R G + +GD V++++AGE+IP+V+ +V Sbjct: 356 PVSVAGSIVELATLHNQTEVK---------RKG--VLIGDTVVIRKAGEIIPEVLGPVVE 404 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R + + FP CP C ++ L P+ V RC C AQ R+K+ R Sbjct: 405 RRDGTEREYVFPENCPSCGTK----LAPQREGDV-DWRCPNSQKCPAQVAARIKYLADRG 459 Query: 480 AFNIEGLGKQQLDFFFKS-----EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F+IE LG++ + +S E F++ AD+ R TTK + G Sbjct: 460 RFDIEALGEKAAEDLVRSGVLVDEGGLFNL-TEADLL----RTSIYTTKKGTLNATGKKL 514 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + NL + ++ L R + SL IR VG +R+LA Y S IA Sbjct: 515 LKNLETA----KHTDLWRVMASLSIRMVGNTASRALASRYRSLDALRAATVEDIAETEG- 569 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654 VG ++AQ+ ++++ + V+ K + +V Sbjct: 570 ---------VGLVMAQSFKDWFEVQWHCDIVDQWAKSGVTVEDDASDRPEQVLAGLTVVV 620 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG+L+ R A+E + G S +S+KTD ++VG+ GSK +KA+ LG+ I++E F Sbjct: 621 TGSLEGFTRDSAKEAIISRGGKASGSVSKKTDYVVVGEKAGSKEQKARDLGLTILDEAGF 680 Query: 715 LFLL 718 + LL Sbjct: 681 VQLL 684 >gi|225022751|ref|ZP_03711943.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii ATCC 33806] gi|224944472|gb|EEG25681.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii ATCC 33806] Length = 699 Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 229/728 (31%), Positives = 369/728 (50%), Gaps = 72/728 (9%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P E ++ +E L E++ H + YY + P I D+E+DAL ++ +A+ P+LA Sbjct: 5 PAETTDTQEIHQEWQRLASEVTRHRELYYNQT-PEITDAEFDALFKKLEALEADHPELAT 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++G + S V H LSL+ +++ E+L +++ R+ ++ Sbjct: 64 ---PDSPTQQVGAPVESSFENVEHLERMLSLDNVFDEEELDEWLQRV---------DAPE 111 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPE 183 + E KIDG + + Y G AA RGDG GEDV+ + I +P +L+ IP Sbjct: 112 YVTELKIDGLSLALVYRNGVLERAATRGDGRIGEDVTENAKVIQDVPHMLTATEEFPIPN 171 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHG 242 ++EVRGEV+I+ DF +N++ G KP+ANPRNAA+G LR+ + + R L HG Sbjct: 172 LLEVRGEVFIAVEDFAEVNEQRQKDGGKPFANPRNAAAGSLRQKDVEAVRRRKLRMLCHG 231 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF---HGIVSYYNEMKSIRSTLPYDI 299 +G T QY + + G PV++ + T H V+Y+ + R ++ Sbjct: 232 IGATEGFTPASQYHAYEALAAWGLPVSDYTKLVKTIDEVHKQVAYWEKH---RGDAVCEM 288 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DGLV KVD + Q+QLG +R+PRW I++K+ ++ T+LLDI +GRTG +TP A +E Sbjct: 289 DGLVVKVDSIAEQRQLGATSRAPRWAIAYKYPPEEVQTKLLDIHEGVGRTGRVTPYAVME 348 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV++ G+++ ATLHN+ +K R G + +GD V++++AGE+IP+V+ +V Sbjct: 349 PVSVAGSIVELATLHNQTEVK---------RKG--VLIGDTVVIRKAGEIIPEVLGPVVE 397 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R + + FP CP C ++ L P+ V RC C AQ R+K+ R Sbjct: 398 RRDGTEREYVFPENCPSCGTK----LAPQREGDV-DWRCPNSQKCPAQVAARIKYLADRG 452 Query: 480 AFNIEGLGKQQLDFFFKS-----EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F+IE LG++ + +S E F++ AD+ R TTK + G Sbjct: 453 RFDIEALGEKAAEDLVRSGVLVDEGGLFNL-TEADLL----RTSIYTTKKGTLNATGKKL 507 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 + NL + ++ L R + SL IR VG +R+LA Y S IA Sbjct: 508 LKNLETA----KHTDLWRVMASLSIRMVGNTASRALASRYRSLDALRAATVEDIAETEG- 562 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK---- 650 VG ++AQ+ ++++ + V+ K S E + S + E Sbjct: 563 ---------VGLVMAQSFKDWFEVQWHCDIVDQWAK----SGVTMEDDASDQPEQVLAGL 609 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+L+ R A+E + G S +S+KTD ++VG+ GSK +KA+ LG+ I++ Sbjct: 610 TVVVTGSLEGFTRDSAKEAIISRGGKASGSVSKKTDYVVVGEKAGSKEQKARDLGLTILD 669 Query: 711 EEQFLFLL 718 E F+ LL Sbjct: 670 EAGFVQLL 677 >gi|227488027|ref|ZP_03918343.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum ATCC 51867] gi|227091889|gb|EEI27201.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum ATCC 51867] Length = 679 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 220/703 (31%), Positives = 356/703 (50%), Gaps = 52/703 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM- 82 L ++ YH D YY P I D+E+D L + + P L P+ P ++G Sbjct: 12 LAAQVRYHRDKYYN-GTPEITDAEFDVLFSQLQQLEAEHPGL---RAPDSPTLEVGAPSP 67 Query: 83 -NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 S + H SL+ +++ ++L +++ R S +++E KIDG I + Sbjct: 68 EGSSFENIAHLERMYSLDNVFSKDELEQWLIRT---------PSDTYSVELKIDGVSIDL 118 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKND 197 Y G+ AA RGDG GE+++A R I IP L N IP ++EVRGEVYI+ +D Sbjct: 119 VYRDGELATAATRGDGTVGEEITANARMITGIPDHLQENDAFPIPSVLEVRGEVYIAIDD 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ +KP+ANPRNAA+G +R+ +P + R L HG+G I + Q E Sbjct: 179 FPLVNEQRQLENKKPFANPRNAAAGSMRQKDPQAVKKRKLTLVCHGIGAAEGISVESQTE 238 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + + G PV+ ++ + + R +++DG+V KVD Q+ LG Sbjct: 239 AYKALAAFGLPVSEYTTVVHSHEEVHEMVEKWADHRHDAVFEMDGMVVKVDNREQQRALG 298 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW I++K+ ++A T+L+D+ + +GRTG +TP A +EPV + G+ + ATLHN+ Sbjct: 299 ATSRAPRWAIAYKYPPEEAVTKLIDVRVGVGRTGRVTPFAIMEPVEVAGSTVEMATLHNQ 358 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 +V R G + +GD+V++++AGEVIP+V+ + + R +PF FP+ CP Sbjct: 359 S---------EVNRKG--VLIGDQVVIRKAGEVIPEVLGPVADLRDGTERPFVFPTLCPQ 407 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C ++ L P + A RC +C Q RL++ R F+IE LG++ + Sbjct: 408 CGTK----LAPAK-EEDADWRCPNTRSCPGQLAGRLEYIAGRGVFDIEALGEKAAADLVR 462 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + + AD+FTL + N G + + L + ++ L R I Sbjct: 463 T----GILTDEADLFTLTEDDLLDSRVYTNSKGAVNAAGKKLIAGLKTQKETDLWRVITG 518 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 L IRHVG AR+LA+ + S + +A VG +IA +IV+++ Sbjct: 519 LSIRHVGPTAARALAREFGSMDAIRKATEEELAATEG----------VGGVIAASIVDWF 568 Query: 617 QNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + V+A + V+ R E + +E +V TG+L+ R A+E + + G Sbjct: 569 SVDWHRAIVDAWAEAGVTMEDERGEAKEQT-LEGLTIVVTGSLENYTRDGAKEAIIERGG 627 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S +S+KTD ++VG N GSK KA++LG I+NE+QF LL Sbjct: 628 KASGSVSKKTDYVVVGANAGSKAAKAEELGRPIINEQQFEELL 670 >gi|124006376|ref|ZP_01691210.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134] gi|123988033|gb|EAY27704.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134] Length = 691 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 214/720 (29%), Positives = 373/720 (51%), Gaps = 63/720 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++A++ + L +++ +++ YYQ ++ D ++D L + FP + + P Sbjct: 1 MTNQEAQERIRELSKDLHHYNYMYYQKHVSVVTDYKFDKLLEELIDLEEKFPQFKKDDSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++GG + + H LSL ++ +DL F R+ + DD I + E Sbjct: 61 S---QRVGGTITKDFPTIKHRYRMLSLGNTYSKDDLLDFDKRLKKLL--GDDKEIEYICE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGE 190 K DG I++ YE GK V AA RGDG G+DV+A R I T+P + N P EVRGE Sbjct: 116 LKFDGVSISLTYENGKLVTAATRGDGVQGDDVTANARTIRTVPISIQGNSFPANFEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-----YLNFFVHGLGK 245 V++ F A+N + + G+ YANPRN ASG ++ + ++ + YL F LG Sbjct: 176 VFMPNKVFEAINAQRVKEGKDLYANPRNTASGTMKLQDSAEVAKRKLDAYLYFL---LG- 231 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + K E ++ + GF V+ ++ ++ Y N + R LP D DG+V K Sbjct: 232 -DNLPYKTHEEAIKAVESWGFHVSPTYKRCTGIDAVMEYVNHWEKERKNLPVDTDGVVIK 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ LQ+QLG ++SPRW I++K+ + ST L I Q+GRTG +TPVA L PV + G Sbjct: 291 VNDIDLQEQLGFTSKSPRWAIAYKYKAESVSTVLNSITYQVGRTGSVTPVAELTPVQLAG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + A+LHN D I+ + D V V++ GE+IPKV + + +R +A Sbjct: 351 TTVKRASLHNADEIESR----------LQLHENDTVFVEKGGEIIPKVTGVDLTKRAANA 400 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 Q F CP C + +VR K G+ A H C C Q R++HF+ R+A +I+ Sbjct: 401 QAVKFIDHCPECGTALVR----KDGE--ANHYCPNEKGCPPQIKGRIEHFIQRNALDIDS 454 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + ++ F+ ++ AD++ L +Q S + FG+ S NL + + + Sbjct: 455 MGGETINQLFEKG----LVKNVADLYDLTLKQLLSLDR------FGEKSAHNLIEGLKQS 504 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++IS R ++ LGIR VG +A+ LA ++ + + + +H+ L+ V +G Sbjct: 505 KSISFARVLYGLGIRFVGKTVAQKLAVHFKTMEAIQK-----ASHD-----ELVAVEDIG 554 Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 IA +++E +++ N+ + L ++ +P + + S +++ K V +GT Q Sbjct: 555 GRIADSLIEHFKDTENLDVINRLKAAGLQFEDNTPVLQKD----SDKLDGKTFVVSGTFQ 610 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 + R + ++ + G V + +S+K D +I GD G SKL+KA++L V +++E++F+ ++ Sbjct: 611 QFSRDEIKQKIEANGGKVVSSISKKLDYLIAGDKMGPSKLDKAKKLDVTMISEDEFVQMV 670 >gi|303254175|ref|ZP_07340287.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455] gi|302598846|gb|EFL65880.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455] Length = 652 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 218/685 (31%), Positives = 363/685 (52%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+PD ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDCLYRELVELETAYPDQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG + R Sbjct: 76 LYSLQDAFSREELEAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILLAGVTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q ++L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLKHLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I + E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWDFIQEVGEERDNLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRISE-EKLDIPTNCPSCDSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F ++ ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLFAAD----LVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 L K E+ L G + S + LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RL---------KEEDFLLLEGVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +++ S +N AQ D + + +G +IA+++ ++ + + Sbjct: 513 LLLQHFHSIENLAQA----------DPEEVASIESLGGVIAKSLQTYFATEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++ G + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVAGADAGSKLQKAQELGIEVRDE 646 >gi|313886637|ref|ZP_07820349.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I] gi|312923933|gb|EFR34730.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I] Length = 679 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 216/718 (30%), Positives = 365/718 (50%), Gaps = 68/718 (9%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ L I H+ YY + P I D++YDAL +R + P+LA DP P ++G Sbjct: 9 EIEQLRTTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPELA---DPTSPSLRVG 65 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + N + +V H P LSL +N +++ + R D + + E K DG+ I Sbjct: 66 RDRNDAFVQVAHERPMLSLSNTYNYDEIAEICERTDTLLATDD---VPWVAEMKYDGSSI 122 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS--LNIPEI----IEVRGEVYI 193 ++ YE+G V A RGDG G+DV+ +R I ++P L P+ IEVRGEV + Sbjct: 123 SLIYEEGVLVRAVTRGDGTLGDDVTVNVRTIQSVPLRLRPVAGHPDYTMGRIEVRGEVLL 182 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEI 249 +F LN E A G P+ANPRNAA+G L+ LN + + + ++++ L + + Sbjct: 183 PFKEFERLNGERTAEGEAPFANPRNAAAGTLKTLNSRVVAQRRLLCICYYLYALDDEARL 242 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 YE ++ + +GF +++ + Y +E R LPY DG+V KVD Sbjct: 243 -PDSYYERMKLLEEMGFNTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGIVLKVDSL 301 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+ LG A+SPRW ++K+ + A LL +D Q+GR+G++TPVA +EPV I G ++ Sbjct: 302 TQQRTLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGVVTPVANVEPVLISGTVVR 361 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNE++IK L D+ D V +++ GE+IPK+ + + R P+++P Sbjct: 362 RATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVETSLRRPESEPVR 410 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + ++ ++ G + C AC Q + R++H+ +R A +I +G + Sbjct: 411 LPERCPACGA-PLQQIDGSVG-----YYCVNSYACPPQIMGRIEHYCTRRAADI-NVGPE 463 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F I D++ L + + + + F + S+ NL SI + ++ Sbjct: 464 TIDALFDRH----LIENIDDLYKL------TASDLAQLPNFKEKSINNLLASIEQSKSRP 513 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R ++ +GIR+VG A++LA+++ S AQ + L +P VG IA Sbjct: 514 FARLLYGIGIRYVGEGTAKTLARHFQSIDRLAQATD----------YELQALPDVGPKIA 563 Query: 610 QAIVEFYQNPRNI--------CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 + +V F+ RN C V L ++ + + N+ +E +++V +G+ + Sbjct: 564 EQVVYFFSLERNQQLIAELQRCGV-ILEEQTEETTDAPQSNL---LEGERIVISGSFTQH 619 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 R + ++ + Q G V +S +T +++G + G SK KA+QLG+ ++ EE+FL L Sbjct: 620 SRDEYKQLIEQHGGVNVGSISGRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLARL 677 >gi|225858927|ref|YP_002740437.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae 70585] gi|254781425|sp|C1C7B1|DNLJ_STRP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225720821|gb|ACO16675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 70585] Length = 652 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 218/683 (31%), Positives = 361/683 (52%), Gaps = 61/683 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 76 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+++ ++ + IP L+ + I VRGE Y+ + F +N G +A Sbjct: 131 GDGSIGENITENLKRVKDIPLTLTEELD--ITVRGECYMPRASFDQVNQARQENGEPEFA 188 Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 189 NPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPKRI 246 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF + Sbjct: 247 LAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFPAE 306 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 + +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI + Sbjct: 307 EKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AEK 355 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 356 DIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE------ 408 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ L Sbjct: 409 VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIYRL 463 Query: 514 QRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 Q E+ L G + S LY +I + S E+ +F LGIRHVG++ ++ L Sbjct: 464 QE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLL 514 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 +Y+ S +N Q + +A + +G +IA+++ ++ + + LK Sbjct: 515 LQYFHSIENLYQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE-LK 563 Query: 631 EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 E ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD++ Sbjct: 564 ETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTDLV 623 Query: 689 IVGDNPGSKLEKAQQLGVKIMNE 711 +VG + GSKL+KAQ+LG+++ +E Sbjct: 624 VVGADAGSKLQKAQELGIQVRDE 646 >gi|149006206|ref|ZP_01829918.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74] gi|225856757|ref|YP_002738268.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae P1031] gi|307127352|ref|YP_003879383.1| NAD-dependent DNA ligase [Streptococcus pneumoniae 670-6B] gi|254781432|sp|C1CKI0|DNLJ_STRZP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147761983|gb|EDK68945.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74] gi|225725530|gb|ACO21382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae P1031] gi|306484414|gb|ADM91283.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 670-6B] gi|332075451|gb|EGI85920.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41301] Length = 652 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 362/685 (52%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 76 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N Q + +A + +G +IA+++ ++ + + Sbjct: 513 LLLQYFHSIENLYQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646 >gi|118617527|ref|YP_905859.1| NAD-dependent DNA ligase LigA [Mycobacterium ulcerans Agy99] gi|166216215|sp|A0PPW9|DNLJ_MYCUA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118569637|gb|ABL04388.1| DNA ligase [NAD dependent] LigA [Mycobacterium ulcerans Agy99] Length = 683 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 230/714 (32%), Positives = 366/714 (51%), Gaps = 55/714 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ L +++ H YY P+I D+E+D L RR +A+ +P+L P+ P + Sbjct: 3 RQWQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPEL---RTPDSPTQLV 59 Query: 79 GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + F+ V H LSL+ +N E+L + RI+ +S + E KIDG Sbjct: 60 GGAGFATEFEPVEHLERMLSLDNAFNTEELTAWAGRIH----ADVGDSAAYLCELKIDGV 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 +++ YE G+ A+ RGDG +GEDV+ R I +P LS + +PE++EVRGEV+ Sbjct: 116 ALSLVYEGGRLTRASTRGDGRTGEDVTLNARTIEDVPERLSHSEDHRMPEVLEVRGEVFF 175 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG T Sbjct: 176 RVADFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHTEGFRPA 235 Query: 253 GQYEMLQKMRCLGFPVNNG---VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ ++ G PV+ V + Y+ E R + ++IDG+V KVD+ Sbjct: 236 TLHQAYLALQAWGLPVSQHTTLVADLAEVQARIDYWGEH---RHEVDHEIDGVVVKVDDV 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + Sbjct: 293 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVA 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN +K R G + +GD V++++AG+VIP+V+ +V+ R + F Sbjct: 353 QATLHNASEVK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFV 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + + + K G A RC +C Q ER+ H SR+A +IE LG Sbjct: 402 MPTTCPECGTPLAPE---KEGD--ADIRCPNTRSCPGQLRERVFHVSSRNALDIEMLG-- 454 Query: 490 QLDFFFKSEDPAFSIRI---PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 +++ S R+ D+F L + T G + L +++K + Sbjct: 455 -----YEAGAALLSARVIGDEGDLFGLTEEELLRTDLFRTKAGDLSANGRRLLANLDKAK 509 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L R + +L IRHVG AR+LA + S I+ I+A + L V VG Sbjct: 510 AAPLWRVLVALSIRHVGPTAARALATEFGS-------IDAIVAATTE---QLAAVEGVGP 559 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IA A+ E++ + VE + +V + +V TG+L R +A Sbjct: 560 TIASAVSEWFTVDWHREIVERWRAAGVRMADERDDSVPRTLAGVTVVVTGSLPGFSRDEA 619 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +E + G + +S+KT ++ GD PGSK +KA +LGV I++E+ F LL+Q Sbjct: 620 KEAIVTRGGKAAGSVSKKTSYVVAGDAPGSKYDKAVELGVPILDEDGFRKLLEQ 673 >gi|254383201|ref|ZP_04998554.1| DNA ligase [Streptomyces sp. Mg1] gi|194342099|gb|EDX23065.1| DNA ligase [Streptomyces sp. Mg1] Length = 736 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 225/737 (30%), Positives = 365/737 (49%), Gaps = 71/737 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ + L +++ H YY +P++ D+E+D L R +A+ +P L P+ P K Sbjct: 18 REQHALLAEQVEEHRFRYYVNDQPVVSDAEFDQLLRSLEALEEQYPQL---RTPDSPTQK 74 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + G V H LSL+ ++ E+L + R+ R D + E K+DG Sbjct: 75 VAGAYETDFASVQHRERMLSLDNAFDDEELAAWAERVARDANTSD---YHYLCELKVDGL 131 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 + + YE G+ AA RGDG +GED++ +R I IP R+ IP ++E+RGEV+ Sbjct: 132 AVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGDRIPALVEIRGEVFFPME 191 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQY 255 F LN ++ KP+ANPRNAA+G LR+ +P +R L+ VHG+G Sbjct: 192 KFEELNARLVETEGKPFANPRNAAAGSLRQKDPKITASRPLHMVVHGIGAREGFDIDKLS 251 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + +R G P R ++ + + R ++ ++IDG+V K+DE LQ +L Sbjct: 252 HAYELLREWGLPTARHNRVVSSLAEVREFITHFGENRHSVEHEIDGVVVKLDEIPLQGRL 311 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G AR+PRW I+ K+A ++ +T+L+DI + +GRTG +TP A++EPV + G+ + ATLHN Sbjct: 312 GSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFATLHN 371 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ++ +K + + +GD V++++AG+VIP+++ +V+ R + F P+ CP Sbjct: 372 QEVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAECP 420 Query: 436 ICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 C + L P K G + RC G C AQ ERL + R +IE G Sbjct: 421 ECGT----PLRPMKEGDI--DLRCPNGQTCPAQLRERLFYLGGRQCLDIENFGAVAAAAL 474 Query: 495 FKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTKIENIL----G 529 +PA +R D+F L +R +T KI + G Sbjct: 475 TNPLEPAEPPLRDEGDLFGLTIEDLLPIKAYVLDGDSGLPKRDPKTGEEKIVTVFANQKG 534 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 + + ++I + L R I L IRHVG A +LA+ + S + Q +A Sbjct: 535 EPKKNALAMLENIAAAKERPLARVINGLSIRHVGPVAAEALAREFRSIERIEQATEEELA 594 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--- 646 + VG IIA ++ E++ + + +L++ + R E+ S E Sbjct: 595 ATDG----------VGAIIAASLKEWFA----VDWHQEILRKWREAGVRMEEEGSGEEEG 640 Query: 647 ---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGSK +KA Q Sbjct: 641 PRPLEGLTVVVTGTLESHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAVQ 700 Query: 704 LGVKIMNEEQFLFLLQQ 720 L + I+++ F LL+Q Sbjct: 701 LKLAILDDAGFAVLLEQ 717 >gi|291454298|ref|ZP_06593688.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074] gi|291357247|gb|EFE84149.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074] Length = 736 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 222/739 (30%), Positives = 358/739 (48%), Gaps = 73/739 (9%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR+ L +++ H YY +P++ D+E+D R + +P L P+ P Sbjct: 22 ARERHKHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYPPL---RTPDSPTQ 78 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K+ G+ V H LSL+ ++ E+L + R+ + + F E K+DG Sbjct: 79 KVAGQYETEFTSVQHRERMLSLDNAFDDEELAAWAERVAK---EVGAPGYHFLCELKVDG 135 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 + + YE G+ AA RGDG GED++ +R I IP R+ ++P ++E+RGEV+ Sbjct: 136 LAVNLTYEHGRLTRAATRGDGRVGEDITPNVRTISDIPERLHGDDLPALVEIRGEVFFPM 195 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 +F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 196 EEFEKLNARLVEAGEKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAREGFTIDCL 255 Query: 255 YEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +R G P N V + ++YY + R ++ ++IDG+V K+DE L Sbjct: 256 SHAYDLLRSWGLPTARHNKVVEGLDGVRAFITYYGDH---RHSVEHEIDGVVVKLDEVPL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R+PRW I+ K+ ++ ++RL+DI + +GRTG +TP A++EPV + G+ + A Sbjct: 313 QGRLGSTSRAPRWAIAWKYPPEEVNSRLIDIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+D ++ + + +GD V++++AG+VIP+++ + + R +PF+ P Sbjct: 373 TLHNQDVVR-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGTERPFTMP 421 Query: 432 SFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG--- 487 + CP C + L P K G + RC +C AQ ER+ + R +IE G Sbjct: 422 AECPECST----PLKPMKEGDIDL--RCPNARSCPAQLRERIYYLAGRKCLDIENFGYVA 475 Query: 488 ---------------KQQLDFFFKSEDPAFSIR---IPADIFTLQRRQQTSTTKI----E 525 + + D F + D IR + D +R +T KI Sbjct: 476 ATALTQPLEPSEPPLRDEGDLFDLTVDQLLPIRSYVLDPDSGLPKRDPKTGEEKIVTFFA 535 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 N G + + D I + L R + L IRHVG A++LA+ + S + Sbjct: 536 NKQGEAKKNTLAMLDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATE 595 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEK 641 +A VG IA ++ ++ + V EA ++ S G E Sbjct: 596 EELAQTEG----------VGPTIAASLKSWFAEEWHREIVRKWREAGVRMEEESTGEDEG 645 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGSK +KA Sbjct: 646 --PRPLEGLTVVVTGTLEHHTRDNAKEALQNQGAKVTGSVSKKTSFVVVGDNPGSKYDKA 703 Query: 702 QQLGVKIMNEEQFLFLLQQ 720 Q V +++E F LL Q Sbjct: 704 MQAKVPVLDEAGFAVLLDQ 722 >gi|260887264|ref|ZP_05898527.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185] gi|330838979|ref|YP_004413559.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185] gi|260863326|gb|EEX77826.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185] gi|329746743|gb|AEC00100.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185] Length = 669 Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 222/714 (31%), Positives = 374/714 (52%), Gaps = 55/714 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + I++ +KEL+ L + I +H+ YY P I D EYD L + A+ +P+L Sbjct: 1 MDIQEVKKELAQLRRTIRHHNVRYYNDDNPEISDYEYDQLMLQLKALEREYPELITE--- 57 Query: 72 NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 N P K+GG + V H +P LSL+ +++ E++ F+ R + + +N +F + Sbjct: 58 NSPTQKVGGTAKRTAGTLVRHDVPMLSLQDVFSREEIEAFV----RDIEARMENPVF-VV 112 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG + +RYE G A RGDG GEDV+ + I + + L +P EVRG Sbjct: 113 EEKIDGLSLALRYENGTLSRAITRGDGIVQGEDVTENAKVIKDVVQKLKEPLP-YFEVRG 171 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247 EVY++K F A+N+ +G K +ANPRN A+G LR+L+ + IT R L+ FV L Sbjct: 172 EVYMTKAAFEAVNERRQLIGLKLFANPRNCAAGTLRQLD-SRITKERGLSLFVFNLQAVR 230 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + E M G V + T + ++ + R LPYDIDG V K++ Sbjct: 231 GKDFQTHVEAYDFMNRQGIKVIHAFHVCRTAEEVWDAIEQIGASRGDLPYDIDGAVVKLN 290 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +FS ++ LG +++PRW I++K+ ++ + + I + +GRTG +TP A +P+ + G Sbjct: 291 DFSQRESLGATSKAPRWAIAYKYPPEEKESVVRSITLSVGRTGRITPTATFDPIRLCGTT 350 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHN+D+I L D+RVGD V+V ++GE+IPK+ ++ +R +P Sbjct: 351 VERATLHNQDFIDDL-----------DVRVGDTVVVYKSGEIIPKIKAVVKEKRPEGTEP 399 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F CP+C ++ R+ + K + AC AQ + +FVSRDA +I+GLG Sbjct: 400 FKIGDRCPVCGAKAEREADSADVKCI-------NQACPAQVESHILNFVSRDAMDIKGLG 452 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + + F + DIF L+ ++ + + ++G + + L +I + + Sbjct: 453 EKNIAALI---EKGF-LHTIVDIFRLKEHREELIS--QGVVG-KEKNTDKLLAAIEEAKK 505 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +R + LGI +G A +L +++ + + A N +++ V +G+ Sbjct: 506 NEPQRLLTGLGIPGIGKAAAAALMQHFKTLE----------ALENASDEAILAVRDMGET 555 Query: 608 IAQAIVEFYQNPRN--ICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRH 664 AI ++QN N IC L+++ + E+ E+ + V TGTL+ R Sbjct: 556 SVAAIRSYFQNEGNAKICRE---LQQLGVATAVQERAAQGDELADMSFVVTGTLRHFGRR 612 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + E + Q G V++ +S+KTD ++ G+N GSKL+KA+QLG++I+ EE+FL L+ Sbjct: 613 EITELIEQHGGRVTSSVSKKTDCLVAGENAGSKLQKAEQLGIRILTEEEFLQLI 666 >gi|302522063|ref|ZP_07274405.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78] gi|302430958|gb|EFL02774.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78] Length = 783 Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 232/752 (30%), Positives = 373/752 (49%), Gaps = 83/752 (11%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 EA R+E + +E+ H YY +P++ D+++D L RR A+ P L Sbjct: 29 EAAVPADVREEHDGIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---R 85 Query: 70 DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P K+ G+ V H LSL+ +++ E L + R+ + + Sbjct: 86 TPDSPTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAK---EIGAPGYH 142 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 + E K+DG + + YE G+ AA RGDG GED++ +R I IP L+ + +PE++E Sbjct: 143 YLCELKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVE 202 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 VRGEVY DF ALN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 203 VRGEVYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIG- 261 Query: 246 TSEIFA----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 E F YE+L + G P + ++ G+ S+ R ++ ++IDG Sbjct: 262 AREGFTIDRLSHAYELLHEW---GLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDG 318 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V K+DE LQ +LG +R+PRW + KF ++ +T+L+DI + +GRTG +TP A +EP+ Sbjct: 319 VVVKLDEIPLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPI 378 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ + ATLHN+D +K + + +GD V++++AG+VIP+++ +V+ R Sbjct: 379 VVAGSEVEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLR 427 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 F P+ CP C + +R + K G + RC +C AQ ER+ + R + Sbjct: 428 DGSEHAFVMPAECPECGT-PLRAM--KEGDI--DLRCPNARSCPAQLRERIFYLAGRKSL 482 Query: 482 NIEGLG---KQQLDFFFKSEDPAFSIRIPADIFTL--------------------QRRQQ 518 +IE LG L + DP +R D+F L +R Sbjct: 483 DIEHLGYVAATALTQPIEPSDP--PVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPA 540 Query: 519 TSTTKI----ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 + KI N G + ++ ++I + L + + L IRHVG A +LA+ + Sbjct: 541 SGEEKIVTFFANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREF 600 Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 S I+ I A + L VG IA ++ ++Y+ + +L+ Sbjct: 601 RS-------IDRIFAAEESE---LAETEGVGPTIAASLKQWYEEDWH----REILRRWKA 646 Query: 635 SIGRHEKNVSS------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 + R E S +E +V TGTL++ R A+E + GA V+ +S+KT + Sbjct: 647 AGVRMEAAESETDSGPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFV 706 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +VGDNPGSK +KA L V ++ E+ F LLQ+ Sbjct: 707 VVGDNPGSKYDKALSLKVPVLEEDGFAILLQE 738 >gi|24379931|ref|NP_721886.1| NAD-dependent DNA ligase LigA [Streptococcus mutans UA159] gi|81451132|sp|Q8DT49|DNLJ_STRMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|24377912|gb|AAN59192.1|AE014986_3 DNA ligase [Streptococcus mutans UA159] Length = 652 Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 230/707 (32%), Positives = 365/707 (51%), Gaps = 75/707 (10%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED--PNGPL 75 ++ ++ L Q ++ + YY P + D+EYD L R + FP ED PN P Sbjct: 2 KERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFP-----EDILPNSPT 56 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +++G + K H P SL+ ++ E+L F RI + + D + E KID Sbjct: 57 HRVGDLVLDGFEKYRHEYPLFSLQDAFSREELDAFDRRIKAEFPQAD-----YLAELKID 111 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYI 193 G I++ Y G+ A RGDG GE+++ ++ + IP L++PE I+ VRGE Y+ Sbjct: 112 GLSISLTYVNGRLRVGATRGDGTVGENITENLKRVRDIP----LHLPENIDLTVRGECYL 167 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFA 251 K F +N E G +ANPRNAA+G LR+L+ + + F G T+ A Sbjct: 168 PKASFKTINAERRENGETEFANPRNAAAGTLRQLDTKVVAKRKLATFIYQEAGPTA---A 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q +L+ LGF VN +++ I + ++ R+ L YDIDG+V KV+ +L Sbjct: 225 SSQEAVLESFAKLGFTVNPRHIISSSMDAIWQFIEDVAKERAELAYDIDGVVIKVNSLAL 284 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+ LG ++PRW I++KF ++ + +L +D +GRTG++TP A L PV + G ++ A Sbjct: 285 QEALGFTVKAPRWAIAYKFPAEEKTAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRA 344 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSF 430 TLHN DYI +DIR+GD V+V +AG++IP V+ ++ N+R D Q P Sbjct: 345 TLHNVDYI-----------AEKDIRIGDIVVVYKAGDIIPAVLHVVENKR--DQQVPLPI 391 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP CQS ++ + A RC C AQ E+L HF SRDA NI GLG Sbjct: 392 PTVCPSCQSELIHFEDE------VALRCVNP-RCPAQLKEKLIHFASRDAMNIIGLGPAI 444 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F +E I ADI+ Q + + + G + S T LY +I + S Sbjct: 445 VEKLFTAE----LICDVADIY------QLTPENLMQLEGIKEKSATKLYKAIQASKANSA 494 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 E+ +F LGIRHVG++ +R L + + S + A + IA + +G +IA+ Sbjct: 495 EKLLFGLGIRHVGSKASRLLMERFESLEQLAAADFDDIAAIDG----------LGIVIAE 544 Query: 611 AIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 ++ ++ + LL E+ + +G+ + + + +V TG L + R Sbjct: 545 SLKTYFAT----AGAQKLLIELKTAGLNLTYLGKKTAS-DAALTGMTIVLTGKLANLTRS 599 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +A+E + LGA V+ +S+KT ++I G + GSKLEKA+ LG++I +E Sbjct: 600 QAKEKLQSLGANVAGSVSKKTSLVIAGSDAGSKLEKAKTLGIEIKDE 646 >gi|15903068|ref|NP_358618.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae R6] gi|116516470|ref|YP_816476.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae D39] gi|81449679|sp|Q8DPS9|DNLJ_STRR6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|122278638|sp|Q04KH2|DNLJ_STRP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|15458641|gb|AAK99828.1| DNA ligase [Streptococcus pneumoniae R6] gi|116077046|gb|ABJ54766.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae D39] Length = 652 Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 362/685 (52%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 76 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N Q + +A + +G +IA+++ ++ + + Sbjct: 513 LLLQYFHSIENLYQADSEEVAS----------IESLGGVIAKSLQTYFAAEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646 >gi|148925946|ref|ZP_01809633.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8486] gi|145844932|gb|EDK22036.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8486] Length = 647 Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 224/689 (32%), Positives = 364/689 (52%), Gaps = 64/689 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYDAL R F + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDALIRELSV----FEEQNKDEISKDSPTQKIAPIIQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L ++W++ED+ F R W K+ F +EPK DG + + YE GK V A Sbjct: 74 ----LRRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++ E IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T IT R L F+ G+G+ + F K E++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 VR ++ Y+E+ ++R P +DG+V +VD+ +L ++LG + P++M + KF Sbjct: 244 VRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+++ D V V R+G+VIPK+ + R S P CP CQS ++ + G Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ +C + C + + + HFVS+ NI+GLG+ ++ +K + I Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ + E + GF + + NL ++I + R L RFI +LGI H+G A+ L+ Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +F +E + + + + G+ +A ++ EF + N ++ K Sbjct: 514 ------LSFGKE------WHKQSFEAYANLEGFGEQMALSLCEFTR--VNHTRIDEFYKL 559 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ I + E S I K V TGTL + R + + + +LG VS +S+KTD ++ G Sbjct: 560 LNLKIEKLEIKSDSMIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSGSVSKKTDYVLFG 618 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GSKL KA++L VK +NE F L+++ Sbjct: 619 EEAGSKLSKAKELEVKCINESAFNELVKE 647 >gi|326776439|ref|ZP_08235704.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1] gi|326656772|gb|EGE41618.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1] Length = 743 Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 217/734 (29%), Positives = 365/734 (49%), Gaps = 65/734 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ + L ++I H YY +P++ D+++D R +A+ P L P+ P K Sbjct: 18 REKHALLAEQIEEHRFRYYVKDQPVVSDADFDRQLRSLEALEEEHPSL---RTPDSPTQK 74 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + G V H LSL+ ++ E+L + R+ + D + F E K+DG Sbjct: 75 VAGPYRTEFTSVEHRERMLSLDNAFDDEELAAWADRVAKDVGTPDHH---FLCELKVDGL 131 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 + + YE G+ AA RGDG +GED++ +R I IP R+ +IP ++E+RGEV+ Sbjct: 132 AVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALVEIRGEVFFPME 191 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255 DF LN ++A KP+ANPRNAA+G LR+ +P TR L+ VHG+G + Sbjct: 192 DFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAHEGLSIDRLS 251 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + G P + ++ G+ + R ++ ++IDG+V K+DE LQ +L Sbjct: 252 AAYDLLHAWGLPTARHNKVVDSLAGVREFIAHYGENRHSVEHEIDGVVVKLDEIPLQGRL 311 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + ATLHN Sbjct: 312 GSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFATLHN 371 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ++ +K + + +GD V++++AGEVIP+++ +V+ R + F P+ CP Sbjct: 372 QNVVK-----------AKGVLIGDTVVIRKAGEVIPEILGPVVDLRDGTEKAFEMPTHCP 420 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +R + L RC C AQ ER+ + R + +I+ G Sbjct: 421 ECGTE-LRPMKEADIDL----RCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAAAALT 475 Query: 496 KSEDPAFSI-RIPADIFTL--------------------QRRQQTSTTKIENIL----GF 530 + +PA + + +D+F+L +R +T KI + G Sbjct: 476 RPLEPAEPVLKDESDLFSLTVEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQGE 535 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + + + I ++ L R + L IRHVG A+ LA+ + S + + +A Sbjct: 536 PKKNAVAMLEGIAAAKDAPLARVLTGLSIRHVGPVAAQELARQFRSIERIDEATEEELAA 595 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSE 646 + VG IA ++ +++ + V EA ++ G E Sbjct: 596 ADG----------VGPTIAASVKQWFAEDWHREIVRKWREAGVRMADE--GSDEDEGPRP 643 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +E +V TGTL R A+E + LGA V+ +S+KT ++VGDNPGSK +KA QL V Sbjct: 644 LEGLTVVVTGTLAGHTRDGAKEALQALGAKVAGSVSKKTAFVVVGDNPGSKYDKAMQLKV 703 Query: 707 KIMNEEQFLFLLQQ 720 +++E+ F LL+Q Sbjct: 704 PVLDEDGFAILLEQ 717 >gi|302542307|ref|ZP_07294649.1| DNA ligase, NAD-dependent [Streptomyces hygroscopicus ATCC 53653] gi|302459925|gb|EFL23018.1| DNA ligase, NAD-dependent [Streptomyces himastatinicus ATCC 53653] Length = 740 Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 228/742 (30%), Positives = 375/742 (50%), Gaps = 76/742 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR E + L +++ H YY PI+ D+E+D L RR +A+ P+L P+ P Sbjct: 12 EARDEHAKLAEQVEEHRFRYYVKDAPIVSDAEFDRLLRRLEALEEDHPEL---RTPDSPT 68 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G +V H LSL+ ++ ++L + RI + + + F E K+D Sbjct: 69 QKVAGAYETEFTEVEHRERMLSLDNAFDDDELGTWADRIAK---ELGTGAYHFLCELKVD 125 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G+ AA RGDG +GED++ +R I IP R+ +P ++EVRGEV++ Sbjct: 126 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLTGDRVPALVEVRGEVFLP 185 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFA 251 + F LN ++ + P+ANPRNAA+G LR+ +P +R L+ VHG+G +I Sbjct: 186 RKAFEELNARLVEAEKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGIGAREGFDIAR 245 Query: 252 KGQ-YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVD 307 Q YE+L + G P R +T G+ +++Y + + R ++ ++IDG V K+D Sbjct: 246 LSQAYELLHEW---GLPTAAHFRVVDTIEGVREYIAHYGDSEH-RHSVEHEIDGAVIKLD 301 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E LQ +LG +R+PRW I+ KF ++ +T+L+DI + +GRTG +TP A +EP+ + G+ Sbjct: 302 EIPLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGSE 361 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHN+D +K + + +GD V++++AG+VIP+++ + + R + Sbjct: 362 VEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSERE 410 Query: 428 FSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P+ CP C + L P K G + RC +C AQ ER+ + R + +IE L Sbjct: 411 FVMPAECPECGT----PLQPAKEGDV--DLRCPNSRSCPAQLRERIFYLAGRKSLDIENL 464 Query: 487 GKQQLDFFFKSEDPAF-SIRIPADIFTL--------------------QRRQQTSTTKIE 525 G + +PA +R D+F L +R +T K+ Sbjct: 465 GYVAAAALTQPLEPAEPPLRDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEEKVV 524 Query: 526 NIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G + + +I + L R I L IRHVG A +LA+ + S A Sbjct: 525 TFFATQKGEAKKNALAMLANIEAAKQRPLARIITGLSIRHVGPVAAAALAREFRSLDRIA 584 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK---EVSPSIGR 638 + +A VG IIA ++ +++ + VE + + G Sbjct: 585 EADEEELAATEG----------VGGIIAASVKQWFAVDWHREIVEKWRRAGVRLEEEAGA 634 Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 E + ++ +V TGTL+ R A+E + GA V+ +S+KTD ++VGDNPGSK Sbjct: 635 DEGPLP--LKGLTVVVTGTLESHTRDGAKEALQNRGAKVTGSVSKKTDFVVVGDNPGSKY 692 Query: 699 EKAQQLGVKIMNEEQFLFLLQQ 720 +KA QL V +++++ F LL+Q Sbjct: 693 DKAMQLKVPVLDDDGFAVLLEQ 714 >gi|157414868|ref|YP_001482124.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni 81116] gi|190359240|sp|A8FL10|DNLJ_CAMJ8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157385832|gb|ABV52147.1| DNA ligase [Campylobacter jejuni subsp. jejuni 81116] gi|315931784|gb|EFV10739.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 327] Length = 647 Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 222/689 (32%), Positives = 365/689 (52%), Gaps = 64/689 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYDAL R AF + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDALIREL----RAFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L+++W++ED+ F +R W K+ F +EPK DG + + YE GK V A Sbjct: 74 ----LKRMWSMEDV--FDESEFRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++ E IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T IT R L F+ GLG+ + F K E++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGLGENTLNFTK-HSEVMQFIRELGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 VR ++ Y+E+ ++R P +DG+V ++D+ +L ++LG + P++M + KF Sbjct: 244 VRLCVNLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+++ D V V R+G+VIPK+ + R S P CP CQS ++ + G Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ +C + C + + + HFVS+ NI+GLG+ ++ +K + I Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ E + GF + + NL ++I + R L RFI +LGI H+G A+ L+ Sbjct: 454 TLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +F +E + + + + G+ +A ++ EF + R ++ K Sbjct: 514 ------LSFGKE------WHKQSFEAYANLEGFGEQMALSLCEFTRVNRT--RIDEFYKL 559 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ I + E I K V TGTL + R + + + +LG VS +S+KTD ++ G Sbjct: 560 LNLKIEKLEIKSDGVIFGKTFVITGTLSR-SRDEFKALIEKLGGKVSGSVSKKTDYVLFG 618 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GSKL KA++L +K ++E F L+++ Sbjct: 619 EEAGSKLIKAKELEIKCIDESAFNELVKE 647 >gi|148986045|ref|ZP_01819066.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71] gi|147921879|gb|EDK73005.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71] gi|301800082|emb|CBW32679.1| DNA ligase [Streptococcus pneumoniae OXC141] Length = 652 Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 362/685 (52%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 76 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDKIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N Q + +A + +G +IA+++ ++ + + Sbjct: 513 LLLQYFHSIENLYQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646 >gi|148998387|ref|ZP_01825829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70] gi|168576158|ref|ZP_02722052.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016] gi|194398076|ref|YP_002037745.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae G54] gi|225861080|ref|YP_002742589.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae Taiwan19F-14] gi|298230922|ref|ZP_06964603.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254162|ref|ZP_06977748.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502866|ref|YP_003724806.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A] gi|254781424|sp|B5E4M9|DNLJ_STRP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781433|sp|C1CRL7|DNLJ_STRZT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147755784|gb|EDK62829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70] gi|183577935|gb|EDT98463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016] gi|194357743|gb|ACF56191.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae G54] gi|225727034|gb|ACO22885.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Taiwan19F-14] gi|298238461|gb|ADI69592.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A] gi|327389325|gb|EGE87670.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA04375] gi|332075071|gb|EGI85542.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17545] Length = 652 Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 362/685 (52%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 76 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N Q + +A + +G +IA+++ ++ + + Sbjct: 513 LLLQYFHSIENLYQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646 >gi|307067701|ref|YP_003876667.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Streptococcus pneumoniae AP200] gi|306409238|gb|ADM84665.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Streptococcus pneumoniae AP200] Length = 648 Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 362/685 (52%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 15 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 71 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 72 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 126 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 127 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 182 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 183 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 240 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 241 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 300 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 301 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 349 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 350 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 404 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 405 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 457 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 458 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 508 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N Q + +A + +G +IA+++ ++ + + Sbjct: 509 LLLQYFHSIENLYQADSEEVAS----------IESLGGVIAKSLQTYFATEGSEILLRE- 557 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 558 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 617 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 618 LVVVGADAGSKLQKAQELGIQVRDE 642 >gi|239982451|ref|ZP_04704975.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074] Length = 728 Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 222/739 (30%), Positives = 358/739 (48%), Gaps = 73/739 (9%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR+ L +++ H YY +P++ D+E+D R + +P L P+ P Sbjct: 14 ARERHKHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYPPL---RTPDSPTQ 70 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K+ G+ V H LSL+ ++ E+L + R+ + + F E K+DG Sbjct: 71 KVAGQYETEFTSVQHRERMLSLDNAFDDEELAAWAERVAK---EVGAPGYHFLCELKVDG 127 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 + + YE G+ AA RGDG GED++ +R I IP R+ ++P ++E+RGEV+ Sbjct: 128 LAVNLTYEHGRLTRAATRGDGRVGEDITPNVRTISDIPERLHGDDLPALVEIRGEVFFPM 187 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 +F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 188 EEFEKLNARLVEAGEKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAREGFTIDCL 247 Query: 255 YEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +R G P N V + ++YY + R ++ ++IDG+V K+DE L Sbjct: 248 SHAYDLLRSWGLPTARHNKVVEGLDGVRAFITYYGDH---RHSVEHEIDGVVVKLDEVPL 304 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q +LG +R+PRW I+ K+ ++ ++RL+DI + +GRTG +TP A++EPV + G+ + A Sbjct: 305 QGRLGSTSRAPRWAIAWKYPPEEVNSRLIDIRVGVGRTGRVTPYAQVEPVTVAGSEVEFA 364 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+D ++ + + +GD V++++AG+VIP+++ + + R +PF+ P Sbjct: 365 TLHNQDVVR-----------AKGVLIGDTVVLRKAGDVIPEILGPVADLRDGTERPFTMP 413 Query: 432 SFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG--- 487 + CP C + L P K G + RC +C AQ ER+ + R +IE G Sbjct: 414 AECPECST----PLKPMKEGDIDL--RCPNARSCPAQLRERIYYLAGRKCLDIENFGYVA 467 Query: 488 ---------------KQQLDFFFKSEDPAFSIR---IPADIFTLQRRQQTSTTKI----E 525 + + D F + D IR + D +R +T KI Sbjct: 468 ATALTQPLEPSEPPLRDEGDLFDLTVDQLLPIRSYVLDPDSGLPKRDPKTGEEKIVTFFA 527 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 N G + + D I + L R + L IRHVG A++LA+ + S + Sbjct: 528 NKQGEAKKNTLAMLDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATE 587 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEK 641 +A VG IA ++ ++ + V EA ++ S G E Sbjct: 588 EELAQTEG----------VGPTIAASLKSWFAEEWHREIVRKWREAGVRMEEESTGEDEG 637 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 +E +V TGTL+ R A+E + GA V+ +S+KT ++VGDNPGSK +KA Sbjct: 638 --PRPLEGLTVVVTGTLEHHTRDNAKEALQNQGAKVTGSVSKKTSFVVVGDNPGSKYDKA 695 Query: 702 QQLGVKIMNEEQFLFLLQQ 720 Q V +++E F LL Q Sbjct: 696 MQAKVPVLDEAGFAVLLDQ 714 >gi|182435814|ref|YP_001823533.1| NAD-dependent DNA ligase LigA [Streptomyces griseus subsp. griseus NBRC 13350] gi|254778153|sp|B1VZW1|DNLJ2_STRGG RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|178464330|dbj|BAG18850.1| putative DNA ligase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 743 Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 217/734 (29%), Positives = 365/734 (49%), Gaps = 65/734 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ + L ++I H YY +P++ D+++D R +A+ P L P+ P K Sbjct: 18 REKHALLAEQIEEHRFRYYVKDQPVVSDADFDRQLRSLEALEEEHPSL---RTPDSPTQK 74 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + G V H LSL+ ++ E+L + R+ + D + F E K+DG Sbjct: 75 VAGPYRTEFTSVEHRERMLSLDNAFDDEELAAWADRVAKDVGTPDHH---FLCELKVDGL 131 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 + + YE G+ AA RGDG +GED++ +R I IP R+ +IP ++E+RGEV+ Sbjct: 132 AVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALVEIRGEVFFPME 191 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255 DF LN ++A KP+ANPRNAA+G LR+ +P TR L+ VHG+G + Sbjct: 192 DFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAHEGLSIDRLS 251 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + G P + ++ G+ + R ++ ++IDG+V K+DE LQ +L Sbjct: 252 AAYDLLHTWGLPTARHNKVVDSLAGVREFIAHYGENRHSVEHEIDGVVVKLDEIPLQGRL 311 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + ATLHN Sbjct: 312 GSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFATLHN 371 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ++ +K + + +GD V++++AGEVIP+++ +V+ R + F P+ CP Sbjct: 372 QNVVK-----------AKGVLIGDTVVIRKAGEVIPEILGPVVDLRDGTEKAFEMPTHCP 420 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + +R + L RC C AQ ER+ + R + +I+ G Sbjct: 421 ECGTE-LRPMKEADIDL----RCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAAAALT 475 Query: 496 KSEDPAFSI-RIPADIFTL--------------------QRRQQTSTTKIENIL----GF 530 + +PA + + +D+F+L +R +T KI + G Sbjct: 476 RPLEPAEPVLKDESDLFSLTVEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQGE 535 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + + + I ++ L R + L IRHVG A+ LA+ + S + + +A Sbjct: 536 PKKNAVAMLEGIAAAKDAPLARVLTGLSIRHVGPVAAQELARQFRSIERIDEATEEELAA 595 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSE 646 + VG IA ++ +++ + V EA ++ G E Sbjct: 596 ADG----------VGPTIAASVKQWFAEDWHREIVRKWREAGVRMADE--GSDEDEGPRP 643 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +E +V TGTL R A+E + LGA V+ +S+KT ++VGDNPGSK +KA QL V Sbjct: 644 LEGLTVVVTGTLAGHTRDGAKEALQALGAKVAGSVSKKTAFVVVGDNPGSKYDKAMQLKV 703 Query: 707 KIMNEEQFLFLLQQ 720 +++E+ F LL+Q Sbjct: 704 PVLDEDGFAILLEQ 717 >gi|205355436|ref|ZP_03222207.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8421] gi|205346670|gb|EDZ33302.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8421] Length = 647 Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 224/689 (32%), Positives = 365/689 (52%), Gaps = 64/689 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYDAL R AF + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDALIREL----RAFEEQNKDEISKDSPTQKIAPIIQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L+++W++ED+ F R W K+ F +EPK DG + + YE GK V A Sbjct: 74 ----LKRMWSMEDV--FNEGELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++ E IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T +T R L F+ G+G+ + F K E++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSMTKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 VR ++ Y+E+ +R P +DG+V +VD+ +L ++LG + P++M + KF Sbjct: 244 VRLCANLDEVLKAYDELLVLREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+++ D V V R+G+VIPK+ + R S P CP CQS ++ + G Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ +C + C + + + HFVS+ NI+GLG+ ++ +K + I Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ + E + GF + + NL ++I + R L RFI +LGI H+G A+ L+ Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +F +E + + + + G+ +A ++ EF + N ++ K Sbjct: 514 ------LSFGKE------WHKQSFEAYANLEGFGEQMALSLCEFTR--VNHTRIDEFYKL 559 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ I + E S I K V TGTL + R + + + +LG VS +S+KTD ++ G Sbjct: 560 LNLKIEKLEIKSDSMIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSGSVSKKTDYVLFG 618 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GSKL KA++L VK +NE F L+++ Sbjct: 619 EEAGSKLSKAKELEVKCINESAFNELVKE 647 >gi|163757008|ref|ZP_02164114.1| DNA ligase [Kordia algicida OT-1] gi|161323012|gb|EDP94355.1| DNA ligase [Kordia algicida OT-1] Length = 665 Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 217/706 (30%), Positives = 375/706 (53%), Gaps = 50/706 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +++L++L E+ H+ YY I D E+D + + P+ DPN P + Sbjct: 5 QEKLTALRDELREHNYNYYVLDNATISDYEFDMKLKELQELEAKHPEF---HDPNSPTLR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG++ + + H SL+ ++ EDL + RI + +++ +T E K DG Sbjct: 62 VGGQITKNFNTIAHEYRMYSLDNSYSKEDLLDWEKRIEKILGV---STVEYTCELKYDGA 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK + A RGDG G++V+ I+ I T+P L + P ++RGE+ + + Sbjct: 119 SMNLTYENGKLIKAVTRGDGFQGDEVTNNIKTIKTVPLQLKGDYPPKFDIRGEIILPLDG 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F +N+E +A G PY NPRN ASG L+ + +++ R L ++ + K + Q+E Sbjct: 179 FKKMNEERVANGEDPYMNPRNTASGSLKLQDSSEVAKRPLECLLYNI-KGERLPIATQFE 237 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K R GF V + A I+ + N ++ R L Y+IDG+V KV+ Q++LG Sbjct: 238 SLEKAREWGFKVPTVAKVAKNVDEILQFVNYWEANRHELKYEIDGVVIKVNNLQYQEELG 297 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++PRW +++KF +Q +T L +I Q+GRTG +TPVA L+PV + G + A+LHN Sbjct: 298 YTSKAPRWAMAYKFKAEQVATVLNEITYQVGRTGAITPVANLQPVLLAGTTVKRASLHNA 357 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I L DIR D V V++ GE+IPK+V + + R D+ + + CP Sbjct: 358 DQIAKL-----------DIRERDTVFVEKGGEIIPKIVGVNFDLRPEDSTETVYATECPE 406 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + + R K G+ A H C C+ Q + R++H++SR A +IEGLG + + + Sbjct: 407 CHTPLER----KEGE--AQHYCPNVAGCTPQIVGRIQHYISRKAMDIEGLGGETVALLVQ 460 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I AD++ L +T ++ + + S NL + I + I ER +++ Sbjct: 461 E----GLITNYADLYEL------TTAQVIPLERMAEKSAENLINGIEASKKIPFERVLYA 510 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR+VG +A+ LAK+Y S I+ ++ +++D L+ V +G IA+++ +F+ Sbjct: 511 LGIRYVGETVAKKLAKHYKS-------IDALMNASSND---LVNVDEIGVKIAESVAQFF 560 Query: 617 QNPRNICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 N+ +E L K ++ S + E ++ + K V +G +K+ R++ ++ + Sbjct: 561 AEDVNLQMIERLKKFGVQLEFSAEQLE-GLTETLLGKSFVVSGVFEKVSRNELKKLIENN 619 Query: 674 GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 G VS+ +S KT ++ GD G SK EKA++L + I+ E++FL ++ Sbjct: 620 GGKVSSSISSKTSFVVAGDKMGPSKREKAEKLNIPIITEDEFLNMI 665 >gi|293365500|ref|ZP_06612209.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037] gi|307703456|ref|ZP_07640398.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037] gi|291315868|gb|EFE56312.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037] gi|307622863|gb|EFO01858.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037] Length = 652 Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 217/682 (31%), Positives = 364/682 (53%), Gaps = 59/682 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+PD ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDCLYRELVELEAAYPDQVLADSPT---HRVGGKVLDGFEKFSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YE G V A R Sbjct: 76 LYSLQDAFSREELEAFDARV-----RKEIPHPTYICELKIDGLSISLTYENGILVAGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQARQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q ++L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKVLEHLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A + + + E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 245 RILAQSIDEVWDFIQEVGQEREKLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S+++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCDSQLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLFA----ANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 R ++ +E G + S + LY +I + S E+ +F LGIRHVG++ ++ L Sbjct: 462 ---RLKENDFLLLE---GVKEKSASKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLLL 515 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +++ S +N AQ D + + +G +IAQ++ ++ + ++ LKE Sbjct: 516 QHFHSIENLAQA----------DPEEVASIESLGSVIAQSLQTYFATEGSKILLDE-LKE 564 Query: 632 VSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 ++ + V ++ + +V TG L+++ R +A+ + LGA V+ +S+KT++++ Sbjct: 565 AGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKNKLEILGAKVTGSVSKKTNLVV 624 Query: 690 VGDNPGSKLEKAQQLGVKIMNE 711 G + GSKL+KAQ+LG+++ +E Sbjct: 625 AGADAGSKLQKAQELGIEVRDE 646 >gi|195867759|ref|ZP_03079760.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660614|gb|EDX53870.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 673 Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 223/714 (31%), Positives = 381/714 (53%), Gaps = 64/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + +++ L+Q++ + YY P + D YD + R + +A+P + N Sbjct: 1 MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQVMRELIELENAYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130 P ++GG ++ KV H P LSL ++ DLRKF Q + S+ + + Sbjct: 58 PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFD-------QDNQNASVDLKGYVV 110 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189 EPKIDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRG Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EVY++ +DF +ND + +K +ANPRNAA+G LR L+ + + R L+ F++ L E Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + K YE +Q ++ F V++ + + +T +++ + +R+ L Y IDG+V K++ Sbjct: 230 LGIKTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINN 289 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIV 349 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPY 398 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ Sbjct: 399 ESITNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSD 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545 ++ F+ A I+ AD++ LQ+ ++ S KI+ D S +NL +SIN Sbjct: 453 AIINKFY----DANLIKNVADLYYLQKHKEFILASDFKIK------DKSFSNLINSINNS 502 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + SLE + + GIRHVG +A+ LAK + + + H N D L+ V G Sbjct: 503 KTRSLEFLLTAFGIRHVGPNLAKKLAKQFKTMTT--------LMHANFDELT--NVDACG 552 Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + A +++ ++ + NIC + L ++ + I N+ E +NK V TG+ Sbjct: 553 EKAALSLINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS 612 Query: 660 KIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 I R + + + + A V +S+KTD ++ G G+KLEKA+ LGVKI+ E Sbjct: 613 -ISRDEIKTILEKYYDAKVKNSVSKKTDYVLAGAEAGTKLEKAKSLGVKIIENE 665 >gi|227832930|ref|YP_002834637.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975] gi|262182581|ref|ZP_06042002.1| NAD-dependent DNA ligase LigA [Corynebacterium aurimucosum ATCC 700975] gi|254781299|sp|C3PFU5|DNLJ_CORA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|227453946|gb|ACP32699.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975] Length = 674 Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 216/713 (30%), Positives = 372/713 (52%), Gaps = 61/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E S L QE+ H + YY +P I D+++D L +R A+ P+L + P+ P + Sbjct: 8 QREWSELAQEVRKHRELYYN-GEPSIPDADFDELFQRLLALEAEHPEL---QTPDSPTQQ 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G ++ + H SL+ +++ E+L+ ++ R + + E KIDG Sbjct: 64 VGAAPEGAV-DIEHLERLYSLDNVFSAEELQDWLDRT---------PAEAYLTELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193 I + Y GK V AA RGDG GED++A R IP IP L+ +P ++EVRGEVY+ Sbjct: 114 SIDLVYRDGKLVTAATRGDGRVGEDITANARVIPDIPHELTGTDEYPVPSLVEVRGEVYM 173 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 ++F +N G+ +ANPRNAA+G LR +P D+ R L+ HG+G Sbjct: 174 RPDEFEEINAARREDGKPTFANPRNAAAGGLRMKDPEDVKKRRLHMVCHGIGARERFQPT 233 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q++ + + GFPV+ ++ T + V+Y+ E R +++DGLV KVD+ Sbjct: 234 SQHDAYKALEAWGFPVSPYTQRVTTAKEVQERVTYWEEH---RHDAYFEMDGLVIKVDDL 290 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+ LG +R+PRW I++K+ ++ +T+LL+I++ +GRTG +TP A +EPV + G+ ++ Sbjct: 291 ASQRALGATSRAPRWAIAYKYPPEEVTTKLLNIEVGVGRTGRVTPFAIMEPVFVSGSTVS 350 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+ +K +++ +GD +++++AGE+IP+V+ ++++R + Sbjct: 351 MATLHNQFEVK-----------NKNVLIGDTIIIRKAGEIIPEVLGPVLDKRDGSETEWV 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP C +++ K G RC +C AQ RL++ SR A +I LG++ Sbjct: 400 FPENCPACGTKLAPQ---KEGD--QDWRCPNTRSCPAQLAARLEYLASRKALDIGELGEK 454 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 S + AD+F L + ++ G + S L +++ R Sbjct: 455 AAADLISS----GVLEDEADLFDLDEQALLKSSVYTTQKGALNASGKKLLENLKTARQAE 510 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R + +L IRHVG AR+LA + S + +A + VG IIA Sbjct: 511 FWRVLVALSIRHVGPIAARALATRFGSMEVLRAASVEELADTDG----------VGTIIA 560 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRHKA 666 ++ ++++ + V+ K + + E++ + +E +V TGTL+ R A Sbjct: 561 ESFKQWFEVDWHDNIVQ---KWTAAGVTMEEESSDKPAQTLEGITVVVTGTLENFTRDSA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + G S+ +S+KT+ ++VG+N GSK +KA+ LG+ I++EE F LL+ Sbjct: 618 KEAIITRGGKASSSVSKKTNYVVVGENAGSKEQKARDLGLTILDEEGFTRLLE 670 >gi|152992057|ref|YP_001357778.1| NAD-dependent DNA ligase LigA [Sulfurovum sp. NBC37-1] gi|166216278|sp|A6Q7G2|DNLJ_SULNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151423918|dbj|BAF71421.1| DNA ligase, NAD-dependent [Sulfurovum sp. NBC37-1] Length = 648 Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 215/687 (31%), Positives = 365/687 (53%), Gaps = 59/687 (8%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P+ D EYD L PD A + P ++GG + K H Sbjct: 19 AYYVEDNPVATDEEYDRLYHEVLDYEMKHPDKALEDSPT---KRVGGIVRDEFTKAKHIK 75 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 S+E +++ E+++ ++ R+ +K+ + EPK DG + + Y+ GK + A Sbjct: 76 RMWSMEDVFSKEEVQDWLDRV-----EKNVGECDYFCEPKFDGASMNLLYDDGKLLRAIT 130 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GE+V+ +R I ++P L ++ +IE+RGEV I K+DF +N+E + G P+ Sbjct: 131 RGDGVVGEEVTDNVRTIRSVP--LVIDYKGLIEIRGEVVIRKDDFEQINEERLKAGEAPF 188 Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L+ + R L F+ G+G+ + + K E ++ + GF Sbjct: 189 ANPRNAAAGSLRQLDSSVTAKRRLVFYPWGIGENT-LDQKKLSEKMEFIYGQGFLRPPYH 247 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 +T I +Y + S R +P +DG+V KVDE Q++LG + PRWM ++KF Sbjct: 248 EACHTIDNIEKFYQFLISKRDEIPMMMDGMVIKVDEIEKQEELGYTVKFPRWMCAYKFPA 307 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + T++ I +Q+GRTG++TPVA +EPVNI GA+++ ATLHN D I+ Sbjct: 308 VEKVTQIRAITLQVGRTGVITPVAEIEPVNIEGAMVSRATLHNFDEIE-----------R 356 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 +DIR+GD V++ R+G+VIPK+ ++++ R D P P+ CP C S ++ + G L Sbjct: 357 KDIRIGDHVIIIRSGDVIPKITKVLIDRRTGDEIPVERPTHCPTCGSELLDE-----GAL 411 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 + +C L C + + + HF + +I+GLG + ++ K I D+++ Sbjct: 412 I---KCQ-NLECPDRVINTIIHFAKKGCMDIDGLGSKIVEQLVKE----GKIHDILDLYS 463 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA- 571 L + + ++ GF + ++NL D+I + L R I ++GI H+G +R+LA Sbjct: 464 L------TYEDLADLEGFKEKKISNLLDAIAASKGAPLHRLITAMGIEHIGEVASRALAL 517 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 ++ L + E +I+A + +G+ +A +++EF + R V L Sbjct: 518 EFGLGIVDAKYE--DIVAIDG-----------IGEEMANSLLEFMRVNRE--KVLKLFNT 562 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + P++ + + + + K +V TGT+ + R K +E + +LGA VS +S+KTD +I G Sbjct: 563 IKPTVEKKVEAKENPFKGKIVVLTGTMSE-SRGKIKEMLEELGAKVSGSVSKKTDFVIYG 621 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ GSKL KA+ LGV + E++ +L Sbjct: 622 EDAGSKLTKAESLGVPTLTEDEMRAML 648 >gi|257467825|ref|ZP_05631921.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185] Length = 688 Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 238/731 (32%), Positives = 384/731 (52%), Gaps = 54/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MK+ +L E +++ ++ + L ++ ++ YY ++ +I D EYD L + Sbjct: 1 MKEMKLNFFEENDMKKDKERIEKLRADLLKYNQYYYTNNESLISDVEYDMLMNELKELEE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNL---SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF 117 +P+ P I G NL KVTH P LSL +N E++ FI RI R Sbjct: 61 KYPEYKSEASPT----VIVGASNLRENKFQKVTHKKPMLSLSNTYNEEEIGDFIDRIKRL 116 Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177 +++D I + LE K+DG I+I+YEKGK V RGDG GEDV+ I I TIP Sbjct: 117 LPERED--IKYALELKLDGLSISIQYEKGKLVRGVTRGDGAIGEDVTENIMEIETIPH-- 172 Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236 +L P +E+RGE+ + + F +LN+ + G + +ANPRNAASG LR+++ + I R L Sbjct: 173 TLKEPLDMEIRGEIVLPISRFESLNERRMEAGEEVFANPRNAASGTLRQIDASIIKERGL 232 Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 + + + + + E ++ + LG +T + + + + L Sbjct: 233 DCYFYFIVDAKNYGIQTHSESIKYLESLGIKTTGVCEVLDTASALKKRIDYWEQEKEKLD 292 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 Y+ DG+V KVD L +LG +SPRW I++KF KQ +T LL I Q+GRTG +TPVA Sbjct: 293 YETDGMVIKVDNLDLWDELGNTTKSPRWAIAYKFPAKQVTTTLLGITWQVGRTGKVTPVA 352 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 LE V + G+ + A+LHN I+ +DIR+GD+V +++A E+IP+VV Sbjct: 353 ELEEVALSGSKVKRASLHNFHEIE-----------RKDIRIGDKVFIEKAAEIIPQVVKS 401 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 I R + + P CP+C S V R+ G++ +CT + C + R+++FV Sbjct: 402 IKEFRDGSEKMITEPDKCPVCGSPVARE----EGQVDI--KCTNPV-CPGKVKGRIEYFV 454 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SRDA NI G G + ++ K + +F I+ DI+ L+ ++ +ENI G SV Sbjct: 455 SRDAMNIGGFGSKMVE---KMLELSF-IKNVGDIYDLKDHKED----LENIEKMGKRSVE 506 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL DSI + + I++LGI +G + LA+ ++ I+N++ ++ Sbjct: 507 NLLDSIEASKKRDYSKVIYALGIPFIGKYSGKLLAEA-------SRNIDNLMKMEIEE-- 557 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE----NKKL 652 LI + +GD A+A+ +F ++ NI + +LK EK + E K Sbjct: 558 -LIEIDGIGDKGAKAVYDFLRDEENIELIN-ILKGHGLQFAMEEKEEEDQSEKIFSGKTF 615 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNE 711 +FTGTL+ +R + +E + +LG + +S+ D +I+G+ GSKL+KAQ+LG VKI+ E Sbjct: 616 LFTGTLKNFKREEIKEEIEKLGGKNLSAVSKNLDYLIIGEKAGSKLKKAQELGTVKILTE 675 Query: 712 EQFLFLLQQYN 722 E+F+ + + N Sbjct: 676 EEFVEICKNNN 686 >gi|116074145|ref|ZP_01471407.1| DNA ligase [Synechococcus sp. RS9916] gi|116069450|gb|EAU75202.1| DNA ligase [Synechococcus sp. RS9916] Length = 691 Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 223/702 (31%), Positives = 347/702 (49%), Gaps = 55/702 (7%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P++ D YD L R + A P L + P ++GG V H I Sbjct: 22 AYYVLDAPVMEDPVYDRLYRELLELESADPSLVTVDSPT---QRVGGTPAEGFSSVRHRI 78 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDN-----SIFFTLEPKIDGTMITIRYEKGKF 148 LSL+ +N E+L + R+ R ++ ++ E KIDG + + YE G Sbjct: 79 GLLSLDNAFNAEELGAWYGRLLRVLDREPSEGQPRPALAMVGELKIDGNALALSYENGVL 138 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG GED++A +R I ++P L L+ P +EVRGE +I F +N + Sbjct: 139 VRAATRGDGEQGEDITANVRTIGSVPLRLQLDQPPAWLEVRGEAFIPDGVFDGINADRQQ 198 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK---GQYEMLQKMRC 263 G +ANPRNA +G LR+L+P + R L+FF + L + + Q++ LQ +R Sbjct: 199 RGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPDDWQGQRPTSQWDSLQWLRD 258 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 GF VN + +++N R L Y DG+V K+D LQ G ++PR Sbjct: 259 AGFKVNPNAELLPDLDAVEAFFNSWDGGRRQLDYATDGVVVKLDNLRLQDAAGFTQKAPR 318 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W I+ K+ ++A ++LL + Q+GRTG++TPVA E V + G ++ ATLHN D + L Sbjct: 319 WAIALKYPAEEAPSKLLRLTCQVGRTGVITPVAEFEAVPLAGTSVSRATLHNADRLDEL- 377 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 D+ GD ++V++AGE+IP+VV ++ R A+ P CP C S +VR Sbjct: 378 ----------DLHAGDTIVVRKAGEIIPEVVRVLKELRPTSAERLQLPHTCPECGSTLVR 427 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 + AA RC +C A L+H+VS+ A +++GLG + ++ D Sbjct: 428 EAGE------AATRCINS-SCPAILRGALRHWVSKGALDVDGLGSKLIEQLV---DRGLV 477 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 I AD++ L +S ++ G S NL ++ R R ++ LGI HVG Sbjct: 478 QSI-ADLYRLDAALLSSLERM------GQKSAENLVSALAASRQQGWARQLYGLGIHHVG 530 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 A++LA + ++ A N + S+ V +GD IAQ++ +++ NP N+ Sbjct: 531 EVNAKALAATFPD-----ADLLQTAACNAPE--SITAVFGIGDEIAQSLQQWFANPSNLQ 583 Query: 624 AVEALLKE-----VSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + L ++ +S R + SSE + V TGTL + R +A+E + G Sbjct: 584 LLNGLREQGFSLALSADEQRRAEAASSERHLSGSTFVLTGTLPTLSRSQAKELIEAAGGK 643 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS +S+KT ++ GD GSKL KA+ LG+ I++E LL Sbjct: 644 VSGSVSKKTSYVVAGDEAGSKLTKAESLGLTILDETGLQALL 685 >gi|307326508|ref|ZP_07605703.1| DNA ligase, NAD-dependent [Streptomyces violaceusniger Tu 4113] gi|306887916|gb|EFN18907.1| DNA ligase, NAD-dependent [Streptomyces violaceusniger Tu 4113] Length = 732 Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 230/740 (31%), Positives = 372/740 (50%), Gaps = 72/740 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+ + L ++I H YY P++ D+E+D L R +A+ P L P+ P Sbjct: 12 EVRERHARLAEQIEEHRFRYYVKDAPVVSDAEFDKLMRELEALEEETPAL---RTPDSPT 68 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G +V H LSL+ ++ E+L + RI + + + F E K+D Sbjct: 69 QKVAGAYETDFTEVEHRERMLSLDNAFDDEELSTWADRIAK---ELGSGAYHFLCELKVD 125 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G+ AA RGDG +GED++ +R I IP R+ +P ++EVRGEV+++ Sbjct: 126 GLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLTGDRVPALVEVRGEVFLA 185 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFA 251 + F LN ++ G+ P+ANPRNAA+G LR+ +P +R L+ VHG+G +I Sbjct: 186 RERFEELNAGLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGIGARDGFDIDR 245 Query: 252 KGQ-YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVD 307 Q YE+L + G P + +T + ++YY + + R ++ ++IDG V K+D Sbjct: 246 LSQAYELLHEW---GLPTAAHFKVVDTIEAVREYIAYYGDSEH-RHSVEHEIDGAVVKLD 301 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E LQ +LG +R+PRW I+ KF ++ +T+L+DI + +GRTG +TP A +EP+ + G+ Sbjct: 302 EIPLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGSE 361 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHN+D +K + + +GD V++++AG+VIP+++ +V+ R + Sbjct: 362 VEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSERE 410 Query: 428 FSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P+ CP C + L P K G + RC +C AQ ER+ + R + +IE L Sbjct: 411 FVMPATCPECDT----PLQPAKEGDV--DLRCPNSRSCPAQLRERIFYLAGRKSLDIENL 464 Query: 487 G------------------KQQLDFF-FKSED--PAFSIRIPADIFTLQRRQQTSTTKIE 525 G K + D F K E P S + D +R +T K+ Sbjct: 465 GYVAAAALTQPLEPTEPPVKDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEAKVV 524 Query: 526 NIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G + + +I + L R I L IRHVG A +LA+ + S A Sbjct: 525 TFFATQKGEAKKNALAMLANIEAAKERPLARIITGLSIRHVGPVAATALAREFRSLDRIA 584 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHE 640 + +A VG IA ++ E++ + +E + V E Sbjct: 585 EADEEELAAVEG----------VGSTIAASVKEWFAVDWHREILEKWRRAGVRLEEEGGE 634 Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 +E+ +V TGTLQ R A+E + GA V+ +S+KTD ++VGDNPGSK +K Sbjct: 635 DEGPRPLESLTVVVTGTLQSYTRDGAKEALQSRGAKVTGSVSKKTDFVVVGDNPGSKYDK 694 Query: 701 AQQLGVKIMNEEQFLFLLQQ 720 A Q+ V +++E+ F LL+Q Sbjct: 695 AMQVKVPVLDEDGFGVLLEQ 714 >gi|169834268|ref|YP_001694538.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae Hungary19A-6] gi|254781426|sp|B1IBQ3|DNLJ_STRPI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|168996770|gb|ACA37382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Hungary19A-6] Length = 652 Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 220/685 (32%), Positives = 362/685 (52%), Gaps = 65/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 76 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNAA+G LR+L+ + R L F++ + S Q + L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLDTAVVAKRNLATFLYQ--EASPSTRDSQEKGLKYLEQLGFVVNPK 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 A I ++ E+ R LPYDIDG+V KV++ Q++LG ++P+W +++KF Sbjct: 245 RILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLVSQEELGFTVKAPKWAVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 305 AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------A 353 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +DIR D V+V +AG++IP V+ ++ ++R + + P+ CP C S ++ + Sbjct: 354 EKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSE-EKLDIPTNCPSCNSDLLHFEDE---- 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 A RC C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ Sbjct: 409 --VALRCINP-RCPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIY 461 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 LQ E+ L G + S LY +I + S E+ +F LGIRHVG++ ++ Sbjct: 462 RLQE---------EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQ 512 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 L +Y+ S +N +Q + +A + +G +IA+++ ++ + + Sbjct: 513 LLLQYFHSIENLSQADSEEVAS----------IESLGGVIAKSLQTYFAAEGSEILLRE- 561 Query: 629 LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 LKE ++ + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD Sbjct: 562 LKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTD 621 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNE 711 +++VG + GSKL+KAQ+LG+++ +E Sbjct: 622 LVVVGADAGSKLQKAQELGIQVRDE 646 >gi|311898479|dbj|BAJ30887.1| putative DNA ligase [Kitasatospora setae KM-6054] Length = 788 Score = 337 bits (863), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 237/767 (30%), Positives = 364/767 (47%), Gaps = 92/767 (11%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R + L EI H YY+ P++ D+E+DAL R +A+ A P LA P+ P Sbjct: 10 EVRTRHAELATEIEEHRSRYYEQDAPVVTDAEFDALMRELEALEAAHPALA---TPDSPT 66 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+GG V H LSL+ + +L + R+ D + E K+D Sbjct: 67 RKVGGAPTALFAPVEHRERLLSLDNAMDDAELAAWAERVAAELAGID---YHYLCELKVD 123 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE+G V AA RGDG GED++ +R I +P R+ ++PE++EVRGEVY Sbjct: 124 GLAVNLTYERGVLVRAATRGDGRVGEDITPNVRTIEGVPHRLRGEDLPELVEVRGEVYFP 183 Query: 195 KNDFLALN--------------DEMIAVGRKPYA------NPRNAASGILRRLNP-TDIT 233 +F ALN +E G++P A NPRNAA+G LR+ +P Sbjct: 184 TAEFEALNASFEAENARRRQENEERAKEGKRPRALIRLFMNPRNAAAGSLRQKDPLITAA 243 Query: 234 RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 R L VHG+G + Q +R G P T + ++ R Sbjct: 244 RPLRLVVHGIGARTGFDIDNQSHAYDLLRGWGLPTARHNAVVGTLDEVRAFIARFGERRH 303 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 ++ ++IDG+V KVDE +LQ +LG ++SPRW I+ K+ ++ + RL DI I IGRTG T Sbjct: 304 SVEHEIDGVVVKVDEIALQGRLGATSKSPRWAIAWKYPPEEVTGRLTDIRIGIGRTGRAT 363 Query: 354 PVARLE-PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412 P A LE PV + G+++ ATLHN+ +K + + +GD V++++AG+VIP+ Sbjct: 364 PYAVLEKPVKVAGSMVQYATLHNQQVVK-----------AKGVLLGDTVVLRKAGDVIPE 412 Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472 +V + + R + F P+ CP C S L P + + RC C AQ ER+ Sbjct: 413 IVGPVHDLRDGGEREFVMPADCPECGS----GLRPMSEGDIDL-RCPNTRYCPAQIRERV 467 Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTLQ-----------RRQQTS 520 R+ ++EG G + +P +R DIF L R +TS Sbjct: 468 AFLAGRNCLDVEGFGYVAATALTQPLEPTEPPVRDEGDIFGLTEERLLPIRVLVRDPRTS 527 Query: 521 TTKIE-------------NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 K++ N G T L D++ R L RF+ L IRHVG A Sbjct: 528 MPKLDDETGEQKEVFFFANNAGTARKDTTALLDNLRAARTSPLWRFLNGLSIRHVGPVAA 587 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP--RNIC-- 623 ++LA+ + ++++ + A + + L V +G IA+A+ E+Y R I Sbjct: 588 QALAREF-------RDLDRVFAADETE---LTAVEGIGPTIARAVKEWYAEDWHREILEK 637 Query: 624 --AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 A + E + +G +E +V TGTL R A+E + GA V+ + Sbjct: 638 WRAAGVVFTEEAEELGER------PLEGLTVVVTGTLAGHTRDGAKEALASRGAKVTGSV 691 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIH 728 S+KT ++ GDNPGSK +KA QLG+ ++++ F LL++ R H Sbjct: 692 SKKTHFVVAGDNPGSKYDKAVQLGLPVLDDAGFAVLLERGADAARAH 738 >gi|332829049|gb|EGK01713.1| DNA ligase [Dysgonomonas gadei ATCC BAA-286] Length = 665 Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 225/713 (31%), Positives = 375/713 (52%), Gaps = 55/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++++ +L +E++ H+ YY S P I D E+D + + P+ D N Sbjct: 1 MDHIKQQIEALREELNKHNHDYYVLSSPTISDFEFDKKLKELSELETLHPEYF---DANS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G ++N S +V H P LSL + ++ F R+ QK ++ E K Sbjct: 58 PTQRVGSDINKSFRQVKHRYPMLSLGNTYTEAEVTDFYNRV----QKGLNDEFEIVCELK 113 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DGT I++ Y G+ A RGDG G+DV+A +R I +IP R+ + P E+RGE+ Sbjct: 114 YDGTSISLTYVNGELTQAITRGDGVQGDDVTANVRTIRSIPLRLHGNDYPAEFEIRGEIL 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLN-FFVHGLGKTSEIF 250 + + F LN E +ANPRNA SG L++ +P + +R L+ + + LG+ + Sbjct: 174 MPWSVFEDLNKERAEQEEALFANPRNAGSGTLKQQDPKIVASRKLDSYLYYMLGEN--LP 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 G YE L K + GF +++ ++ T I +Y + R LP DG+V KV+ + Sbjct: 232 TDGHYENLMKAKEWGFKISDATKKCKTLDEIFAYVHYWDIERKNLPVATDGIVLKVNSLT 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG ++ PRW I+ KF ++A T L + Q+GRTG +TPVA L+ V + G + Sbjct: 292 QQRNLGYTSKFPRWAIAFKFQAEKAVTTLESVSYQVGRTGAVTPVANLKAVKLSGTTVKR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+L+NEDYI L D+ + D+V V++ GE+IPK+ + +R + F Sbjct: 352 ASLYNEDYINLL-----------DLHINDQVYVEKGGEIIPKITGVDTTKRGIFDEKVEF 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 CP C + +V+D A + C ++C Q R++HF++R A NI G G + Sbjct: 401 TKNCPECGTPLVKDDGE------AIYYCPNDISCPPQIKGRIEHFLTRKAMNIAG-GSET 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + A I AD++TL+ + +++E + + S NL DSI+ ++ Sbjct: 454 VEHLYN----ARLIHNIADLYTLKWQ---DVSRLER---WAEKSARNLVDSIHASVSVPY 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R +++LGIR+VG +A+ LA L++ N I+ ++A + ++ L++V +GD IAQ Sbjct: 504 ARVLYALGIRYVGETVAKKLA---LAFPN----IDALMAASAEE---LVQVDEIGDRIAQ 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQRHKAQ 667 +IV ++ N+ V L+E E VS E K +V +GT +K R + + Sbjct: 554 SIVRYFSEISNVEVVNK-LREFGIQFELSEDIVSQRTEKLKGLSIVISGTFEKHSRDEYK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + Q G S +S KT+ I+ GDN G +KLEKA+ LGV +++EE FL +++ Sbjct: 613 AMIEQNGGKNSGSISSKTNYILGGDNMGPAKLEKAESLGVPVISEEVFLEMIK 665 >gi|318059490|ref|ZP_07978213.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actG] gi|318076490|ref|ZP_07983822.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actF] Length = 783 Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 231/752 (30%), Positives = 375/752 (49%), Gaps = 83/752 (11%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 EA R+E + +E+ H YY +P++ D+++D L RR A+ P L Sbjct: 29 EAAVPADVREEHDRIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---R 85 Query: 70 DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P K+ G+ V H LSL+ +++ E L + R+ + + Sbjct: 86 TPDSPTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAK---EIGVPGYH 142 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 + E K+DG + + YE G+ AA RGDG GED++ +R I IP L+ + +PE++E Sbjct: 143 YLCELKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVE 202 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 VRGEVY DF ALN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 203 VRGEVYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIG- 261 Query: 246 TSEIFA----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 E F YE+L + G P + ++ G+ S+ R ++ ++IDG Sbjct: 262 AREGFTIDRLSHAYELLHEW---GLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDG 318 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V K+DE LQ +LG +R+PRW + KF ++ +T+L+DI + +GRTG +TP A +EP+ Sbjct: 319 VVVKLDEIPLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPI 378 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ + ATLHN+D +K + + +GD V++++AG+VIP+++ +V+ R Sbjct: 379 VVAGSEVEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLR 427 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + F P+ CP C + +R + K G + RC +C AQ ER+ + R + Sbjct: 428 DGSERAFVMPAECPECGT-PLRAM--KEGDI--DLRCPNARSCPAQLRERIFYLAGRKSL 482 Query: 482 NIEGLG---KQQLDFFFKSEDPAFSIRIPADIFTL--------------------QRRQQ 518 +IE LG L + DP +R D+F L +R Sbjct: 483 DIEHLGYVAATALTQPIEPSDP--PVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPA 540 Query: 519 TSTTKI----ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 + KI N G + ++ ++I + L + + L IRHVG A +LA+ + Sbjct: 541 SGEEKIVTFFANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREF 600 Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 S I+ I A + L VG IA ++ ++Y+ + +L++ Sbjct: 601 RS-------IDRIFAAEESE---LAETEGVGPTIAASLKQWYEEDWH----REILRKWKA 646 Query: 635 SIGRHEKNVSS------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 + R E S +E +V TGTL++ R A+E + GA V+ +S+KT + Sbjct: 647 AGVRMEAAESETDSGPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFV 706 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +VGDNPGSK +KA L V ++ E+ F LL++ Sbjct: 707 VVGDNPGSKYDKALSLKVPVLEEDGFAILLEE 738 >gi|188524111|ref|ZP_03004188.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273308|ref|ZP_03205844.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195659974|gb|EDX53354.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249828|gb|EDY74608.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 673 Score = 336 bits (861), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 223/714 (31%), Positives = 380/714 (53%), Gaps = 64/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + +++ L+Q++ + YY P + D YD R + +A+P + N Sbjct: 1 MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130 P ++GG ++ KV H P LSL ++ DLRKF Q + S+ + + Sbjct: 58 PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFD-------QDNQNASVDLKGYVV 110 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189 EPKIDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRG Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EVY++ +DF +ND + +K +ANPRNAA+G LR L+ + + R L+ F++ L E Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + K YE +Q ++ F V++ + + +T +++ + +R+ L Y IDG+V K++ Sbjct: 230 LGIKTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINN 289 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIV 349 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPY 398 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ Sbjct: 399 ESITNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSD 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545 ++ F+ A I+ AD++ LQ+ ++ S KI+ D S +NL +SIN Sbjct: 453 AIINKFY----DANLIKNVADLYYLQKHKEFILASDFKIK------DKSFSNLINSINNS 502 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + SLE + + GIRHVG +A+ LAK + + + H N D L+ V G Sbjct: 503 KTRSLEFLLTAFGIRHVGPNLAKKLAKQFKTMTT--------LMHANFDELT--NVDACG 552 Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + A +++ ++ + NIC + L ++ + I N+ E +NK V TG+ Sbjct: 553 EKAALSLINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS 612 Query: 660 KIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 I R + + + + A V +S+KTD ++ G G+KLEKA+ LGVKI+ E Sbjct: 613 -ISRDEIKTILEKYYDAKVKNSVSKKTDYVLAGAEAGTKLEKAKSLGVKIIENE 665 >gi|333024269|ref|ZP_08452333.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071] gi|332744121|gb|EGJ74562.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071] Length = 771 Score = 336 bits (861), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 230/752 (30%), Positives = 375/752 (49%), Gaps = 83/752 (11%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 EA R+E + +E+ H YY +P++ D+++D L RR A+ P L Sbjct: 29 EAAVPADVREEHDRIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQL---R 85 Query: 70 DPNGPLNKIGGEMN--LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P K+ G+ V H LSL+ +++ E L + R+ + + Sbjct: 86 TPDSPTQKVAGDYQQFTPFASVEHRERMLSLDNVFDDEGLAAWAERLAK---EIGAPGYH 142 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 + E K+DG + + YE G+ AA RGDG GED++ +R I IP L+ + +PE++E Sbjct: 143 YLCELKVDGLAVNLTYENGRLTRAATRGDGRVGEDITPNVRTISDIPEQLAGDRVPELVE 202 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 VRGEVY DF ALN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 203 VRGEVYFPMEDFEALNARLVDAGEKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIG- 261 Query: 246 TSEIFA----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 E F YE+L + G P + ++ G+ S+ R ++ ++IDG Sbjct: 262 AREGFTIDRLSHAYELLHEW---GLPTARHNKVVDSLDGVRSFIRYYGEHRHSVEHEIDG 318 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V K+DE LQ +LG +R+PRW + KF ++ +T+L+DI + +GRTG +TP A +EP+ Sbjct: 319 VVVKLDEIPLQGRLGSTSRAPRWATAWKFPPEEVNTKLVDIRVGVGRTGRVTPYAVVEPI 378 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ + ATLHN+D +K + + +GD V++++AG+VIP+++ +V+ R Sbjct: 379 VVAGSEVEFATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLR 427 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + F P+ CP C + +R + K G + RC +C AQ ER+ + R + Sbjct: 428 DGSERAFVMPAECPECGT-PLRAM--KEGDI--DLRCPNARSCPAQLRERIFYLAGRKSL 482 Query: 482 NIEGLG---KQQLDFFFKSEDPAFSIRIPADIFTL--------------------QRRQQ 518 +IE LG L + DP +R D+F L +R Sbjct: 483 DIEHLGYVAATALTQPIEPSDP--PVRDEGDLFDLTAEELLPIRSYVLDQDSGLPKRDPA 540 Query: 519 TSTTKI----ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 + KI N G + ++ ++I + L + + L +RHVG A +LA+ + Sbjct: 541 SGEEKIVTFFANKEGVAKKNTLSMLENIEAAKQRPLAQILTGLSVRHVGPVAAAALAREF 600 Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 S I+ I A + L VG IA ++ ++Y+ + +L++ Sbjct: 601 RS-------IDRIFAAEESE---LAETEGVGPTIAASLKQWYEEDWH----REILRKWKA 646 Query: 635 SIGRHEKNVSS------EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 + R E S +E +V TGTL++ R A+E + GA V+ +S+KT + Sbjct: 647 AGVRMEAAESETDSGPRPLEGLTVVVTGTLERWTRDAAKEALQSRGAKVTGSVSKKTSFV 706 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +VGDNPGSK +KA L V ++ E+ F LL++ Sbjct: 707 VVGDNPGSKYDKALSLKVPVLEEDGFAILLEE 738 >gi|292670878|ref|ZP_06604304.1| DNA ligase [Selenomonas noxia ATCC 43541] gi|292647499|gb|EFF65471.1| DNA ligase [Selenomonas noxia ATCC 43541] Length = 673 Score = 336 bits (861), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 223/706 (31%), Positives = 358/706 (50%), Gaps = 54/706 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I++ + EL+ L ++I + YY + I D ++D L +R AI +P+L N Sbjct: 4 IKEIKNELTELRKKIRKYSKQYYDENASDISDYDFDLLMQRLKAIEAEYPELITK---NS 60 Query: 74 PLNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P K+GG + V H +P LSL+ +++ +++R F+T + + + F +E Sbjct: 61 PTQKVGGTAQREVGVLVPHDVPMLSLQDVFSEDEIRTFVTGVLSHFPSAE-----FVVEE 115 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + +RYE G V A RGDG GEDV+ RAI + L ++P EVRGEV Sbjct: 116 KIDGLSLALRYENGALVRAITRGDGVVQGEDVTLNARAISDVVETLHDSVP-YFEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 Y+ + F +N+ +G KP+ANPRN A+G LR+L+ R L+ FV L + Sbjct: 175 YMERAAFAEVNERQELLGLKPFANPRNCAAGTLRQLDARVTKERKLSMFVFNLQRAEGHS 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI---RSTLPYDIDGLVYKVD 307 + MR G + + N H +N + +I R LPYDIDG V KV+ Sbjct: 235 FTSHTDAYDFMRAQGIKI---IANYNVCHTADEVWNAIMAIGARRGDLPYDIDGAVVKVN 291 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F+ + +LG A++PRW I++K+ ++ T L +I++ +GRTG +TP A +PV + G Sbjct: 292 DFAQRAELGTTAKAPRWAIAYKYPPEEKETILRNIELSVGRTGRITPTAVFDPVQLCGTR 351 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHN+DYI L D+R+GD +LV ++GE+IP+V +I +R + P Sbjct: 352 VERATLHNQDYIDSL-----------DVRIGDTILVYKSGEIIPRVKAVIKEKRPKNTPP 400 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F CP+C S VR+ + A +C AC AQ + +FVSR+A +I+G G Sbjct: 401 FVIGDQCPVCGSHAVRETD------TADMKCQNP-ACPAQVENHILNFVSRNAMDIKGFG 453 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFT--LQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 + + A + ADI++ L R + S+ I + SV N +IN+ Sbjct: 454 ESAIIALTH----AGYLHDIADIYSLHLHRNELISSGLIGR-----EKSVDNRLAAINES 504 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + + +R + LGI +G A SL + + S I+ + D + VP +G Sbjct: 505 KANTPDRLLTGLGISGIGRAAAVSLMQAFPS-------IDALQETACTDPEKIRAVPDMG 557 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +I Q + EF+ + ++ K + ++ K V TGTL + R + Sbjct: 558 EISVQKLTEFFTSETGRALLDKFRAAGVNFASTPMKPAGAALDGKSFVITGTLPTLSREE 617 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +T G V + +S+KTD ++ G+ GSKL+KA+ LG+ I++E Sbjct: 618 CASLITSHGGTVKSSVSKKTDYLVAGEAAGSKLQKAEDLGIPILDE 663 >gi|257466592|ref|ZP_05630903.1| NAD-dependent DNA ligase [Fusobacterium gonidiaformans ATCC 25563] gi|315917747|ref|ZP_07913987.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563] gi|313691622|gb|EFS28457.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563] Length = 676 Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 228/703 (32%), Positives = 369/703 (52%), Gaps = 56/703 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L++++ + D YY ++ +I D EYD L + + + + ++ + +G + Sbjct: 14 LQKKLQRYSDAYYSQNESLISDYEYDMLLKELENLEAEL----QIQNKDSITQTVGSSLK 69 Query: 84 LSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 S F K+ H P LSL + I ++ F+ R + D+ + +E K+DG I+I Sbjct: 70 NSKFQKIAHKTPMLSLSNTYQIGEIEDFLLRAKKNLNMTDNLEV--EMEIKLDGLSISII 127 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 YEKGK V A RGDG GEDV+ + I +IP LS IE+RGE+ + ++F LN Sbjct: 128 YEKGKLVRAVTRGDGIVGEDVTENVLQIESIPHELSEAFD--IEIRGEIVLPFSEFENLN 185 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 I G + +ANPRNAASG LR+L+P + R+L + + + + Q + + + Sbjct: 186 KIRIEKGEEVFANPRNAASGTLRQLDPKIVKERHLAAYFYFIVNAEQYGIHSQKDSIAFL 245 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSI---RSTLPYDIDGLVYKVDEFSLQKQLGER 318 L P G+ FH + N ++ R L Y+ DGLV K++ SL ++LG Sbjct: 246 EKLSLPTT-GI--CEIFHNLSDLENRIEHWSKERENLAYETDGLVLKINNISLWEKLGST 302 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +SPRW +++KF KQ +T+LLDI Q+GRTG +TPVA LE V + G+ + A+LHN D Sbjct: 303 GKSPRWAVAYKFPAKQVTTKLLDITWQVGRTGKITPVAELEEVELSGSRVKRASLHNYD- 361 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 +++R +DIR+GD V +++A E+IP+VV + +R + + P+ CPIC Sbjct: 362 --------EIVR--KDIRIGDTVFIEKAAEIIPQVVKSVKQDRTGEEKEIEAPAHCPICN 411 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S + R+ K + H C G + +++FVSRD NI GLG + L+ F Sbjct: 412 SVLEREQGLVDLKCINKH-CPGKIQG------EMEYFVSRDGMNISGLGGKILEKFL--- 461 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 D + + +DI+ L+ R++ ++E + G S+ NL +SI + + S ++ +++LG Sbjct: 462 DLHY-LEDVSDIYYLKERKE----ELEQLDKMGKKSIENLLNSIEESKKTSYDKVLYALG 516 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I VG A+ LAK E NI L ++ +G+ +A++IV+F+QN Sbjct: 517 IPFVGKVAAKLLAK----------ESKNIFKLQTMTEEELQQIEGIGEKMARSIVDFFQN 566 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEI---ENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 ++ L+ + S+E + K + TGTL K R + QE + + G Sbjct: 567 EVKKQLIQNLIDIGLCFTLKDGVEASTEAKIWQGKTFLVTGTLSKYTRAELQEDIEKSGG 626 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFL 717 + +++K D +IVG+ GSKLEKA+ LG V I+ EE FL L Sbjct: 627 TNLSSVTKKLDYLIVGEKAGSKLEKAKALGSVTILTEEDFLAL 669 >gi|153952455|ref|YP_001398174.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. doylei 269.97] gi|190359241|sp|A7H3U4|DNLJ_CAMJD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152939901|gb|ABS44642.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. doylei 269.97] Length = 647 Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 221/689 (32%), Positives = 365/689 (52%), Gaps = 64/689 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYDAL R F + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDALIREL----RVFEEQNKDEVSKDSPTQKIAPTIQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L+++W++ED+ F R W K+ F +EPK DG + + YE GK V A Sbjct: 74 ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++ + IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKKRIEIRGEVVILKDDFEKINEKRALLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T IT R L F+ G+G+ + F K E++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFVRDLGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 ++ ++ Y+E+ ++R P +DG+V +VD+ +L ++LG + P++M + KF Sbjct: 244 IKLCANLDEVLKAYDELLTLREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ I++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGINLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+++ D V V R+G+VIPK+ + R S P CP CQS ++ + G Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISHPKLCPTCQSELLDE-----GT 407 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ +C + C + + + HFVS+ NI+GLG+ ++ +K + I Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ + E + GF + + NL ++I + R L RFI +LGI H+G A+ L+ Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +F +E + + + + + G+ +A ++ EF + N ++ K Sbjct: 514 ------LSFGKE------WHKQSFEAYVNLEGFGEQMALSLCEFTR--VNHTRIDEFYKL 559 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ I + E S I K V TGTL + R + + + LG VS +S+KTD ++ G Sbjct: 560 LNLKIEKLEVKSDSVIFGKTFVITGTLSR-PRDEFKALIENLGGKVSGSVSKKTDYVLFG 618 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GSKL KA++L VK ++E F L+++ Sbjct: 619 EEAGSKLSKAKELEVKCIDESAFNELVKE 647 >gi|227542668|ref|ZP_03972717.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum ATCC 51866] gi|227181551|gb|EEI62523.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum ATCC 51866] Length = 679 Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 219/703 (31%), Positives = 355/703 (50%), Gaps = 52/703 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM- 82 L ++ YH D YY P I D+E+D L + + P L P+ P ++G Sbjct: 12 LAAQVRYHRDKYYN-GTPEITDAEFDVLFSQLQQLEAEHPGL---RAPDSPTLEVGAPSP 67 Query: 83 -NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 S + H SL+ +++ ++L +++ R S +++E KIDG I + Sbjct: 68 EGSSFENIAHLERMYSLDNVFSKDELEQWLIRT---------PSDTYSVELKIDGVSIDL 118 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKND 197 Y G+ AA RGDG GE+++A R I IP L N IP ++EVRGEVYI+ +D Sbjct: 119 VYRDGELATAATRGDGTVGEEITANARMITGIPDHLQENDAFPIPSVLEVRGEVYIAIDD 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F +N++ +KP+ANPRNAA+G +R+ +P + R L HG+G I + Q E Sbjct: 179 FPLVNEQRQLENKKPFANPRNAAAGSMRQKDPQAVKKRKLTLVCHGIGAAEGISFESQTE 238 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + + G PV+ ++ + + R +++DG+V KVD Q+ LG Sbjct: 239 AYKALAAFGLPVSEYTTVVHSHEEVHEMVEKWADHRHDAVFEMDGMVVKVDNREQQRALG 298 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW I++K+ ++A T+L+D+ + +GRTG +TP A +EPV + G+ + ATLHN+ Sbjct: 299 ATSRAPRWAIAYKYPPEEAVTKLIDVRVGVGRTGRVTPFAIMEPVEVAGSTVEMATLHNQ 358 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 +V R G + +GD+V++++AGEVIP+V+ + + R +PF FP+ CP Sbjct: 359 S---------EVNRKG--VLIGDQVVIRKAGEVIPEVLGPVADLRDGTERPFVFPTLCPQ 407 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C ++ L P + A RC +C Q RL++ R F+IE LG++ + Sbjct: 408 CGTK----LAPAK-EEDADWRCPNTRSCPGQLAGRLEYIAGRGVFDIEALGEKAAADLVR 462 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + + AD+FTL + N G + + L + ++ L R I Sbjct: 463 T----GILTDEADLFTLTEDDLLDSRVYTNSKGAVNAAGKKLIAGLKTQKETDLWRVITG 518 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 L IRHVG AR+LA+ + S + +A VG +IA +IV+++ Sbjct: 519 LSIRHVGPTAARALAREFGSMDAIRKATEEELAATEG----------VGGVIAASIVDWF 568 Query: 617 QNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + V+A + V+ R E + +E +V TG+L+ R +E + + G Sbjct: 569 SVDWHRAIVDAWAEAGVTMEDERGEAKEQT-LEGLTIVVTGSLENYTRDGVKEAIIERGG 627 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S +S+KTD ++VG N GSK KA++LG I+NE+QF LL Sbjct: 628 KASGSVSKKTDYVVVGANAGSKAAKAEELGRPIINEQQFEELL 670 >gi|312865342|ref|ZP_07725570.1| DNA ligase (NAD+) [Streptococcus downei F0415] gi|311099453|gb|EFQ57669.1| DNA ligase (NAD+) [Streptococcus downei F0415] Length = 673 Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 215/685 (31%), Positives = 355/685 (51%), Gaps = 63/685 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D++YD L R + A P+L +++ P +++GG + K TH P Sbjct: 40 YYTQDNPSVSDAQYDKLYRELVDLEKAHPELVQADSPT---HRVGGLVLDGFEKYTHEYP 96 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ K + S + E KIDG I++ Y G+ A R Sbjct: 97 LFSLQDAFSREELDDFDRRV-----KAEFPSASYLAELKIDGLSISLTYVNGQLQIGATR 151 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+++ ++ I IP LSL + I VRGE Y+ + F A+N + G+ +A Sbjct: 152 GDGTVGENITENLKRIQDIP--LSLAGGQTITVRGEAYLPRASFEAINAKRREEGQDEFA 209 Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+ + R L F++ + E Q +L+ +GF VN Sbjct: 210 NPRNAAAGTLRQLDTAVVAQRKLATFIYQ--EAGETDFPTQEAVLEGFADMGFVVNPRRI 267 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 ++ I + +++ R L YDIDG+V KV+ ++Q++LG ++PRW I++KF + Sbjct: 268 VTSSMDEIWDFIQAVQADRDNLAYDIDGIVIKVNSLAMQEELGFTVKAPRWAIAYKFPAE 327 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 + +++ +D +GRTG++TP A L PV + G ++ ATLHN DYI + Sbjct: 328 EKEAKIISVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYI-----------ADK 376 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIR+ D V+V +AG++IP V+++++ +R P P CP C SR+V + Sbjct: 377 DIRLDDTVVVYKAGDIIPAVLNVVMAKRQKQL-PMEIPETCPSCYSRLVHYEDE------ 429 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RC C AQ E+L HF SRDA NI GLG ++ ++ A I+ AD++ Sbjct: 430 VALRCVNP-RCPAQLKEKLIHFASRDAMNITGLGPSLIEKVYQ----AGLIQDVADLY-- 482 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 Q + + + G + S LY +I + S E+ +F LGIRHVGA+ ++ L + Sbjct: 483 ----QLTVADLLTLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGAKASKQLLEK 538 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S IA + +G +IAQ++ +++ + L++E+ Sbjct: 539 FGSLGQLMSAKFEAIAD----------IDGLGAVIAQSLQDYFATD----GAKQLMRELQ 584 Query: 634 PS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 + +G+ + + +V TG L + R +A+E + LGA V+ +S+ TD+ Sbjct: 585 EAGLNFDYLGKRVTE-DAALSGMTVVLTGKLVSLTRSQAKEKLETLGAKVTGSVSKNTDL 643 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEE 712 ++ G + GSKL KAQ+LG+ I +E+ Sbjct: 644 VVAGTDAGSKLTKAQELGITIQDED 668 >gi|32267302|ref|NP_861334.1| NAD-dependent DNA ligase LigA [Helicobacter hepaticus ATCC 51449] gi|81665265|sp|Q7VF74|DNLJ_HELHP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|32263355|gb|AAP78400.1| DNA ligase [Helicobacter hepaticus ATCC 51449] Length = 650 Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 231/692 (33%), Positives = 371/692 (53%), Gaps = 62/692 (8%) Query: 26 QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS 85 ++++YH YY +PI D +YD+L + P L D + P ++G S Sbjct: 14 KKMAYH---YYVLDEPIATDEQYDSLYHQIVRFEEENPHLI---DASSPTQRVGDVPLES 67 Query: 86 LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145 K TH SLE ++N ++L +++ RIY+ + + FT PK DG + + Y++ Sbjct: 68 FSKNTHLERMWSLEDVFNYDELVEWVQRIYKSYPQAT-----FTCSPKFDGASLNLLYQE 122 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205 GK V A RGDG GE V+ + I +IP L +N E IE+RGEV I+K DF +N + Sbjct: 123 GKLVSATTRGDGVIGELVTHNAKTIQSIP--LEINYKEEIEIRGEVVIAKEDFEYINQDR 180 Query: 206 IAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 ++ +ANPRNAA+G LR+L+ R L F G+G I + YE + L Sbjct: 181 LSENLSLFANPRNAAAGSLRQLDAKITAKRKLRFMPWGIG-AGLIRFESFYEAFNTITRL 239 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 GF + + I + YN + S R+ P +DG+V +D+ + Q+QLG +SPR+ Sbjct: 240 GFAPVPFLSYCESIESIQNAYNVLFSQRNNYPIMLDGMVIMLDKIASQQQLGWTIKSPRF 299 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 ++KF + S+++L + +Q+GRTGI+TPVA L+PV I GA+I+ ATLHN I+ Sbjct: 300 ACAYKFPAVEKSSKILSVSLQVGRTGIITPVAELKPVEIEGAMISRATLHNFSEIE---- 355 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC-QSRVVR 443 +DIR+GD V++ R+G+VIPK++ +V R + S P+ CP+C + ++ Sbjct: 356 -------RKDIRLGDEVIIIRSGDVIPKIIKPLVALRDGTQKVISKPTHCPVCGEELLLE 408 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 D+ K C L+C A+ +E + HF S+ A NI+GLG++ + +++ AF Sbjct: 409 DIFIK---------CQ-NLSCEARVIESIIHFASKKALNIDGLGEKIVIQLYEN---AF- 454 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 +R DI+ L S ++ + G+ + NL +I + L RFI +LGI H+G Sbjct: 455 VRNIKDIYAL------SIQQLLTLEGWQEKRANNLIYAIQNTIGVELWRFINALGIEHIG 508 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 ++ LA+ + F E++ I++ V G+ +A ++VEF N N Sbjct: 509 EGASKKLAQKF-GLNVFELELSEILS-----------VDGFGEEMAYSLVEF--NHANKT 554 Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 + LL + P + E + ++ NK +V TGTL + R + + + GA +S+ +S+ Sbjct: 555 LIAELLCIIKPKVELLEIDNNNVFFNKTIVLTGTLSQ-PRDRIIKLLESKGAKISSSVSK 613 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 KTD +I G+ GSKLEKAQ L + +NEE+FL Sbjct: 614 KTDFVIYGEKAGSKLEKAQSLNITTLNEEEFL 645 >gi|253583310|ref|ZP_04860508.1| DNA ligase [Fusobacterium varium ATCC 27725] gi|251833882|gb|EES62445.1| DNA ligase [Fusobacterium varium ATCC 27725] Length = 688 Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 233/724 (32%), Positives = 377/724 (52%), Gaps = 54/724 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MK+ +L E ++ ++ + L ++ ++ YY ++ +I D EYD L + Sbjct: 1 MKEMKLNFFEENDMKTDKERIEKLRADLLKYNQYYYTNNESLISDVEYDMLMNELKDLEE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNL---SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF 117 +P+ P I G NL KVTH P LSL +N E++ FI RI + Sbjct: 61 KYPEYKSEASPT----VIVGASNLRENKFQKVTHRKPMLSLSNTYNEEEIGDFIDRIKKL 116 Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177 ++N+I + LE K+DG I+I+YEKGK V RGDG GEDV+ I I TIP Sbjct: 117 LP--EENNIKYALELKLDGLSISIQYEKGKLVKGVTRGDGAIGEDVTENILEIETIPH-- 172 Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236 +L P IE+RGE+ + + F LN+ + G + +ANPRNAASG LR+++ + I R L Sbjct: 173 TLKEPLDIEIRGEIVLPISKFETLNERRMEAGEEVFANPRNAASGTLRQIDASIIKERGL 232 Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 + + + + + E ++ + LG T + + + + L Sbjct: 233 DCYFYFIVDAKNYGIQTHSESIKYLESLGIKTTGVCEVLGTASALKKRIDYWEQEKEKLD 292 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 Y+ DG+V KVD +LG +SPRW I++KF KQ +T LL I Q+GRTG +TPVA Sbjct: 293 YETDGMVIKVDNLDFWDKLGNTTKSPRWAIAYKFPAKQVTTTLLGITWQVGRTGKVTPVA 352 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 LE V++ G+ + A+LHN I+ +DIR+GD+V +++A E+IP+VV Sbjct: 353 ELEEVSLSGSKVKRASLHNFHEIE-----------RKDIRIGDKVFIEKAAEIIPQVVKS 401 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 I R + + P CP+C S V R+ G++ +CT + C + R+++FV Sbjct: 402 IKEFRDGSEKMITEPDKCPVCGSPVARE----EGQVDI--KCTNPV-CPGKVKGRIEYFV 454 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SRDA NI G G + ++ K + F I+ DI+ L+ ++ +ENI G SV Sbjct: 455 SRDAMNIGGFGSKMVE---KMLELGF-IKNVGDIYDLKDHKED----LENIEKMGKRSVE 506 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL DSI + + I++LGI +G + LA+ ++ I+N++ ++ Sbjct: 507 NLLDSIEASKKRDYSKVIYALGIPFIGKYSGKILAEA-------SRNIDNLMKMEIEE-- 557 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKL 652 L+ + +GD A+A+ +F+++ NI + +L+ EK + K Sbjct: 558 -LMEIDGIGDKGAKAVYDFFRDEENIELIN-ILRGHGLQFAMEEKEEEDQSDKIFSGKTF 615 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNE 711 +FTGTL+ +R + +E + +LG + +S+ D +I+G+ GSKL+KAQ+LG VKI+ E Sbjct: 616 LFTGTLKNFKREEIKEEIEKLGGKNLSAVSKNLDYLIIGEKAGSKLKKAQELGTVKILTE 675 Query: 712 EQFL 715 E+F+ Sbjct: 676 EEFI 679 >gi|118465270|ref|YP_883031.1| NAD-dependent DNA ligase LigA [Mycobacterium avium 104] gi|166215821|sp|A0QJE3|DNLJ_MYCA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118166557|gb|ABK67454.1| DNA ligase, NAD-dependent [Mycobacterium avium 104] Length = 693 Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 226/714 (31%), Positives = 363/714 (50%), Gaps = 49/714 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R++ L + + H YY PII D+E+DAL A+ P+L ++ P + Sbjct: 12 EVRRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPELRVADSPTQLV 71 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 G + + + H LSL+ +++ ++L + R+ + + + E KID Sbjct: 72 GGAGFATDFA--EAAHLERMLSLDDVFDTDELIAWSNRV----ENEIGKDPHYLCELKID 125 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEV 191 G +++ Y G+ AA RGDG GEDV+ R I +P LS +P ++EVRGEV Sbjct: 126 GVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSPSDDFPVPALLEVRGEV 185 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 + DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HG+G+T Sbjct: 186 FFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTEGFS 245 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVD 307 K Q+E + G PV + + + Y+ E R L ++IDG+V KVD Sbjct: 246 PKTQHEAYTALSVWGLPVAEQTARVRGLAAVQERIGYWGEH---RYELQHEIDGVVVKVD 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQ++LG +R+PRW +++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ Sbjct: 303 DVALQRRLGATSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGST 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHN + +V R G + +GD V++++AG+VIP+V+ +V+ R + Sbjct: 363 VGLATLHN---------AAEVKRKG--VLIGDTVMIRKAGDVIPEVLGPVVDLRDGTERE 411 Query: 428 FSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P+ CP C + L P K G A RC +C AQ ER+ H R A +IEGL Sbjct: 412 FVMPTTCPECGT----PLAPAKEGD--ADIRCPNARSCPAQLRERVFHVAGRGALDIEGL 465 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + K A I D+F L T G + T L ++ K + Sbjct: 466 GYEAATALLK----AGVIADEGDLFALTEDDLLRTELFRTKAGTLSANGTRLLQNLQKAK 521 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 ++L R + +L IRHVG AR+LA + ++++I++ + + L V VG Sbjct: 522 KVALWRVLVALSIRHVGPTAARALATEF-------GDLDSIMSASTE---RLAAVEGVGP 571 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IA A+ E++ + V+ + +V +E +V TG+L R A Sbjct: 572 TIAAALTEWFTVDWHRAIVDKWRGAGVRMADERDASVPRTLEGLTVVVTGSLAGFSRDDA 631 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +E + G + +S+KTD ++ GD+PGSK +KA +LGV I++E+ F LL + Sbjct: 632 KEAILARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPILDEDGFRKLLAE 685 >gi|291538763|emb|CBL11874.1| DNA ligase, NAD-dependent [Roseburia intestinalis XB6B4] Length = 671 Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 223/708 (31%), Positives = 374/708 (52%), Gaps = 57/708 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +I+YH D YY P I D E+D L ++ + P+L + P + Sbjct: 5 EQIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTKDSPT---QHV 61 Query: 79 GGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + V H++P LSL+ +++ E++ F+ ++ ++ DD F +E KIDG Sbjct: 62 GGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMK---EQLDDPE--FVVEYKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + +RYE G A RGDG + GEDV+A + I + + L + PE +E+RGEVY+ Sbjct: 117 SMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLK-DKPEYLEIRGEVYMKNE 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAKG 253 DF +N++ +G+K +ANPRN A+G LR+L+ R L+ FV + + +I Sbjct: 176 DFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRGMDIMTHT 235 Query: 254 Q-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q YE L++ G P+ + T + + + R L YDIDG V K++ +S + Sbjct: 236 QGYEFLKRQ---GIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINRYSDR 292 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG ++ P+W I++K+ ++ T+LLDI++ +GRTG +TP A EPV + G ++ AT Sbjct: 293 ELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSVSRAT 352 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFP 431 LHN+D+I L D+ +GD ++V ++GE+IPKV + + E+ PD + F P Sbjct: 353 LHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKE-VRKEKRPDGWKRFMIP 400 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C ++ R+ K A +CT C AQ + +FV RDA +I+G G + Sbjct: 401 DVCPVCGAKTERE------KDTADIKCTSP-NCPAQLERHIINFVGRDAMDIKGFGTVYI 453 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + I+ ADIF L+ ++ + I+G + + L ++I K + Sbjct: 454 EELVR----LGYIKDIADIFELKDHREELIE--QGIIG-KEKNTDKLLETIEKAKENDAY 506 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + GI +VG A+++ K + S I+ N D +L+ V VG++ A Sbjct: 507 MLLTGFGIPNVGKAAAKTIMKRFSS----------ILDLENADRDALMEVDDVGEVSADC 556 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I F+ + +N + A LK + ++ E + + S + K +V TGTL + R +A E V Sbjct: 557 IFRFFHDEKNKEMI-ARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAELV 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G VS +S+KTD ++ G++ GSKL KAQ+LG+ ++ E + LL Sbjct: 616 EKYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663 >gi|329936847|ref|ZP_08286526.1| NAD-dependent DNA ligase LigA [Streptomyces griseoaurantiacus M045] gi|329303772|gb|EGG47656.1| NAD-dependent DNA ligase LigA [Streptomyces griseoaurantiacus M045] Length = 731 Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 229/741 (30%), Positives = 366/741 (49%), Gaps = 76/741 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QAR+ L ++I H YY P++ D+E+D L R + P+L P+ P Sbjct: 15 QARERHVRLAEQIEEHRFRYYVKDAPVVSDAEFDRLLRELQELEERHPEL---RTPDSPT 71 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G V H LSL+ +N EDL + RI R + + F E K+D Sbjct: 72 QKVAGAYETEFTSVRHRERMLSLDNTFNDEDLAAWTERIAR---ELGSQTYHFLCELKVD 128 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G+ AA RGDG +GED++ +R I IP R+ +P+++E+RGEV+ Sbjct: 129 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLHGEEVPDVVEIRGEVFFP 188 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 F LN ++ G KP+ANPRNAA+G LR+ +P +R L+ VHG+G E F +G Sbjct: 189 MEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTASRPLHMVVHGIGAL-EGF-EG 246 Query: 254 QYEMLQKMRCLG---FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Q LG P + R G+ + R ++ ++IDG V K+DE Sbjct: 247 MSRLSQAYDLLGSWGLPTSPYNRVVEDLAGVREFIAHYGENRHSVAHEIDGAVVKLDEIP 306 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +R+PRW I++K+A ++ +TRL++I + +GRTG +TP A++EPV + G+ + Sbjct: 307 LQGRLGSTSRAPRWAIAYKYAPEEVNTRLVNIRVGVGRTGRVTPYAQVEPVTVAGSEVEF 366 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+D +K + + +GD V++++AG+VIP+++ + + R + F Sbjct: 367 ATLHNQDVVK-----------AKGVLIGDMVVLRKAGDVIPEILGPVADLRDGSEREFVM 415 Query: 431 PSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + L P K G + RC AC AQ ERL + R + +IE G Sbjct: 416 PADCPECGT----PLRPMKEGDVDL--RCPNSRACPAQLRERLFYLAGRKSLDIEHFGYV 469 Query: 490 QLDFFFKSEDPA-FSIRIPADIFTL--------------------QRRQQTSTTKIENIL 528 + +PA + D+F L +R +T KI + Sbjct: 470 AAAALTRPLEPAEPPLTDEGDLFDLTMEQLLPIKAYVLDQDSGLPKRDPRTGEEKIATVF 529 Query: 529 ----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 G + ++ ++I + L R + L IRHVG A +LA+ + S Sbjct: 530 ANQQGEPRKNAVSMLENIAAAKERPLARVLTGLSIRHVGPVAAEALAREFRSVDRIEAAS 589 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 +A VG IIA ++ +++ + +L++ + R E+ + Sbjct: 590 EEELAATEG----------VGPIIAASLKQWFAEDWH----REILRKWKAAGVRMEEEST 635 Query: 645 SE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 E +E +V TGTL+ R A+E + GA V+ +S+KT ++VGD+PGSK Sbjct: 636 GEDEGPRPLEGLTVVVTGTLEHHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDSPGSKY 695 Query: 699 EKAQQLGVKIMNEEQFLFLLQ 719 +KA QL V ++NE+ F LL+ Sbjct: 696 DKAMQLKVPVLNEDGFAVLLE 716 >gi|297626017|ref|YP_003687780.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921782|emb|CBL56340.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 764 Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 230/742 (30%), Positives = 381/742 (51%), Gaps = 63/742 (8%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + ++ ++Q R+ + L +EI + YY KP I D+ YD L + +P L Sbjct: 19 VTVKVAGVDQQRRH-AELVKEIDDAQEAYYGRDKPFITDALYDELMLELQKLEAEYPSL- 76 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 P+ P ++G + F +TH LSL+ +++I++L++++TR + ++ Sbjct: 77 --RTPDSPTQRVGAPQEETDFSPLTHPSQMLSLDDVFSIDELKEWMTRT----EAALGHT 130 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-- 183 + E KIDG I ++Y G+ AA RGDG GE+++ R I IP+ L + + Sbjct: 131 PEWLCEVKIDGLAIDLQYVNGRLQTAATRGDGRVGENITPNARTIKAIPQRLRPDPAQDF 190 Query: 184 --IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFV 240 + E RGEV++ +F A ND++ G+ +ANPRNAA+G LR+ +P R L+ Sbjct: 191 LALFEARGEVFVPLKEFAAYNDKLADQGKPQFANPRNAAAGSLRQKDPRVTAQRPLSSIC 250 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 HGLG + Q + M+ G P+ N V + ++YY + R L + Sbjct: 251 HGLGVADGLAVTRQSDAYAVMKAWGLPISPYNKVVHSLDEVLDFITYYGQH---RHDLIH 307 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 IDG+V KVD F+ Q+QLG +R+PRW I+ K+ ++ +TRLLDI +++GRTG +TP Sbjct: 308 QIDGIVVKVDSFAEQQQLGVTSRAPRWAIAFKYPPEEVNTRLLDIRVKVGRTGRVTPYGV 367 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 +EPV + G+++++ATLHN + +V R G + +GD V++++AG+VIP++V + Sbjct: 368 MEPVQVAGSVVSSATLHN---------AYEVERKG--VLIGDMVVLRKAGDVIPEIVGPV 416 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 V R +PF P+ CP C +++ + ++ K + RC +C AQ ERL + Sbjct: 417 VEMRTGAERPFVMPTHCPSCGTKLASEK--ESDKDI---RCPNSKSCPAQLRERLFSLAA 471 Query: 478 RDAFNIEGLGKQQLDFFFKS-----EDPAFSIRIPADIFTLQ--RRQQTSTTKIENIL-- 528 R AF+IE LG Q D ++ E F++ P + T+ R T E L Sbjct: 472 RSAFDIEALGYQGADAILRAGVLDNEAQLFNL-TPEQLVTVPFYTRGATPRELKEPALVP 530 Query: 529 --GFGDVSVTN-----LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G D V + L +++ R+ L R + +L IRHVG AR+LA + S Sbjct: 531 PPGIRDGRVLSANGRRLLENLRTARHQPLWRVLVALSIRHVGPTAARALAARFGS----- 585 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 ++ I A ++ L VG IIA+A+ +++ ++ + A + Sbjct: 586 --MDAIRAAGVEE---LADTDGVGLIIAEAVRDWFTVDWHLEILNAWAADGVSMADEKSA 640 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 + + +V TG+LQ R A+ +T G + +SR TD ++VG+N GSK +A Sbjct: 641 RPAQTLRGLTVVVTGSLQDFTRDSAKAAITDRGGKAAGSVSRHTDYVVVGENAGSKQARA 700 Query: 702 QQLGVKIMNEEQFLFLLQQYNT 723 +QLGV +++E QF LL+ T Sbjct: 701 EQLGVPMLDEAQFRELLEHGPT 722 >gi|86149767|ref|ZP_01067996.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597007|ref|ZP_01100243.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 84-25] gi|218562237|ref|YP_002344016.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|122952953|sp|Q0PAT1|DNLJ_CAMJE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|85839585|gb|EAQ56845.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190696|gb|EAQ94669.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 84-25] gi|112359943|emb|CAL34732.1| DNA ligase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925847|gb|ADC28199.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni IA3902] gi|315927323|gb|EFV06667.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930607|gb|EFV09637.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 305] Length = 647 Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 222/695 (31%), Positives = 360/695 (51%), Gaps = 76/695 (10%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYDAL R F + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDALIREL----RVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L+++W++ED+ F R W K+ F +EPK DG + + YE GK V A Sbjct: 74 ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++ E IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T IT R L F+ G+G+ + F K E++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 VR ++ Y+E+ ++R P +DG+V +VD+ +L ++LG + P++M + KF Sbjct: 244 VRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+++ D V V R+G+VIPK+ + R S P CP CQS ++ + G Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ + C + + + HFVS+ NI+GLG+ ++ +K + I Sbjct: 408 LIKCQ----NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ E + GF + + NL ++I + R L RFI +LGI H+G A+ L+ Sbjct: 454 TLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513 Query: 572 ------KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 Y S++ +A + G+ +A ++ EF + R + Sbjct: 514 LSFGKEWYKQSFEAYAN------------------LEGFGEQMALSLCEFTRVNRT--RI 553 Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 + K ++ I + E I K V TGTL + R + + + +LG VS +S+KT Sbjct: 554 DEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSGSVSKKT 612 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 D ++ G+ GSKL KA++L VK ++E F L+++ Sbjct: 613 DYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647 >gi|296329302|ref|ZP_06871803.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153658|gb|EFG94475.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 696 Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 226/710 (31%), Positives = 379/710 (53%), Gaps = 58/710 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++++ + D YY +K +I D E+D L + +++ +P + ++ + P +G + Sbjct: 34 LREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYP---QYKEISSPTTSVGASLK 90 Query: 84 LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + FK V H LSL +NI ++ +FI RI + K+ + + + LE K+DG I++ Sbjct: 91 ENKFKKVEHLHQMLSLANSYNIGEIVEFIERIKKKIPKEQE--LKYCLEVKLDGLSISLT 148 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV + F LN Sbjct: 149 YRQGKLVRAVTRGDGFIGEDVTENILEIASIVKTLPQAID--MEIRGEVVLPLASFEKLN 206 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 +E + G + +ANPRNAASG LR+L+ + R L+ + + L + ++ K E ++ + Sbjct: 207 NERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGLKSHSESIKFL 266 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 +G T I + + R LPY+ DGLV KVDE +L ++G +++ Sbjct: 267 ESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEINLWDEIGYTSKT 326 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++KF Q ST L D+ Q+GRTG LTPVA LE V + G+ + A+LHN I+ Sbjct: 327 PRWAIAYKFPAHQVSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNISEIQ- 385 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GDRV +++A E+IP+VV I ER + + P CP+C ++ Sbjct: 386 ----------RKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKIIEEPVCCPVCNHKL 435 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R+ + +C C A+ +++FVSRDA NI GLG + ++ F D Sbjct: 436 EREEG------LVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFI---DLG 485 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + I+ DIF L+ ++ +ENI G S+ NL +SI + +N ++ I++LGI Sbjct: 486 Y-IKTVVDIFDLKNHREA----LENIDKMGKRSIENLLNSIEESKNRDYDKVIYALGIPF 540 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G ++ LAK ++ I+ ++ ++ L + +G+I A I+ F+ +N Sbjct: 541 IGKVASKILAKA-------SKNIDKLMTMTFEE---LTSIEGIGEIAANEIIAFFTKEKN 590 Query: 622 ICAVEAL--------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 ++ L +KE S+ +NV+ K +FTGTL+ R + +E + +L Sbjct: 591 QKIIQGLKEKGLKFEIKESEASV----QNVNPNFVGKNFLFTGTLKHFTREQIKEEIEKL 646 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 G + +S+ D +IVG+ GSKL+K Q++ +KI+ EE+F+ L +++ Sbjct: 647 GGKNLSSVSKNLDYLIVGEKAGSKLKKVQEIPTIKILTEEEFIELKDKFD 696 >gi|116071920|ref|ZP_01469188.1| DNA ligase [Synechococcus sp. BL107] gi|116065543|gb|EAU71301.1| DNA ligase [Synechococcus sp. BL107] Length = 682 Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 216/696 (31%), Positives = 348/696 (50%), Gaps = 47/696 (6%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P + D+ YD L R + P L ++ P ++GG V H I Sbjct: 21 AYYVLDTPTMEDAVYDRLYRELLELEQTTPSLKTADSPT---QRVGGAPAEGFTNVEHRI 77 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 LSL+ ++ +DL + R+ R + + + E KIDG + + Y G AA Sbjct: 78 GLLSLDNAFDRDDLNAWNERLLRAIDRPLGSPLELVSELKIDGNALALSYRNGVLERAAT 137 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG GE+++A +R I IP L L N PE +E+RGE +I N F +N E + G Sbjct: 138 RGDGQRGEEITANVRTISAIPLRLQLDNPPEWVEIRGEAFIPDNTFAEINAERESRGEAL 197 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +ANPRNA +G LR+L+P + R L+FF + L ++ Q++ L + GF VN Sbjct: 198 FANPRNACAGTLRQLDPKVVAARRLDFFAYTLHLPAQAQPSSQWDALAWLENAGFRVNPN 257 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 I + + + R LPY DG+V K++ LQ + G +SPRW I+ KF Sbjct: 258 RSLCADLAEINRFSDHWEQGRHDLPYATDGVVVKLNSLVLQDEAGFTQKSPRWAIALKFP 317 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++A +RLL + +Q+GRTG++TPVA EPV + G ++ ATLHN D I L Sbjct: 318 AEEAPSRLLRVVVQVGRTGVITPVAEFEPVALAGTSVSRATLHNADRIAEL--------- 368 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+ +GD ++V++AGE+IP+VV ++ R A P P CP C S +VR+ + Sbjct: 369 --DLHLGDTIVVRKAGEIIPEVVRVLPELRPSSATPVQLPEHCPECGSNLVREGDE---- 422 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 AA RC +C A L+H+VS+ A +++GLG + ++ D I AD++ Sbjct: 423 --AATRCVNS-SCPAILRGGLRHWVSKGALDVDGLGSKLIEQLV---DQGLVSSI-ADLY 475 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L +S ++ G+ S NL +++ R S R ++ LGI H+G A+++ Sbjct: 476 RLDAALLSSLDRM------GERSANNLIEALTLSRQRSWARQLYGLGIHHIGEVSAKAIT 529 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + + N+++ S+ + +G +AQ++ +++ NP N + L + Sbjct: 530 AEF-------PDANSLMEAACTTPDSITAIYGIGTELAQSLQQWFSNPANQQLLNDLRSQ 582 Query: 632 -----VSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 V + H +S+ + V TGTL + R +A+E + G V+ +S+ Sbjct: 583 GFRFAVDENDHGHVGVAASDQHLTGLTFVLTGTLSTLSRSEAKERIEASGGKVTGSVSKN 642 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 TD ++ G+ GSKL KA LG+ I++E LL++ Sbjct: 643 TDYLVAGEEAGSKLTKATTLGITILDEAALHDLLKK 678 >gi|116511279|ref|YP_808495.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris SK11] gi|122940331|sp|Q031P9|DNLJ_LACLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116106933|gb|ABJ72073.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. cremoris SK11] Length = 686 Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 235/747 (31%), Positives = 368/747 (49%), Gaps = 102/747 (13%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IE KE + + +Y YY +P + DSEYD L + P L R++ P Sbjct: 1 MNIESKIKEFTDQLNQFAYE---YYTLDEPSVEDSEYDRLYHELVKLEQENPQLVRADSP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + GG + K H SL +++ E+L + R+ +K+ + + E Sbjct: 58 T---HWTGGVILDGFVKFRHPYNLYSLGDVFSREELALWEERV-----RKEIVNPEYICE 109 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRG 189 KIDG +++ YE G V AA RGDG +GE+++ ++ I +P L + E I+ VRG Sbjct: 110 LKIDGLSLSLYYENGLLVTAATRGDGTTGENITENVKRIKDVP----LKLKEAIDIVVRG 165 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ + +F LN E G P+ANPRNAA+G LR+L+ + R L F++ + S Sbjct: 166 EAYLPRQNFAKLNAERELAGAAPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQ--EASP 223 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q E+L+ LGF VN + A I + E +R LPYDIDG+V KV+ Sbjct: 224 ATNDTQEEVLEYFEELGFQVNPERKFARNLDEIWEFIEEATRLRDELPYDIDGVVIKVNN 283 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q++LG ++PRW I++KF +QA T +L +D +GRTG++TP A + PV + + Sbjct: 284 LAEQEELGFTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP----- 423 ATLHN DYI+ +DIR D+V++ +AG++IPKV +++ +R P Sbjct: 344 ARATLHNVDYIQE-----------KDIRNHDKVMIYKAGDIIPKVGKVLLEKRKPAKHLR 392 Query: 424 ---------------------------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 + P+ CP C S ++ + A Sbjct: 393 KTHRANKYVWTRFGRRSVEKGLVFSKREDNRVKIPTQCPECDSDLIHFEDE------VAL 446 Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516 RC L C AQ E+L HF SRDA NI GLG + F D + AD++ L Sbjct: 447 RCVNPL-CPAQIREKLIHFASRDAMNIVGLGPSVISQLF---DKKLVTDV-ADLYQLTVE 501 Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 + K++ L VS +I + R S E+ +F LGIRHVG + A+ L + + + Sbjct: 502 DLLTLDKVKETLAQKIVS------AIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFAN 555 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS- 635 + +Q I+ +P +G +IA A+V +++ + LL E+ + Sbjct: 556 LRALSQASEEEISE----------IPSLGGVIATAVVSYFET----AGAKTLLDELENAG 601 Query: 636 -----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 +G NV + K +V TG L ++R +A+E + LGA VS +S+KTD+++ Sbjct: 602 LNFAYLG--AVNVEGILSGKTVVLTGKLTTLKRKEAKEKLEALGANVSGSVSKKTDLVVA 659 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFL 717 G+ GSKL KAQ LG++I +E+ L L Sbjct: 660 GEEAGSKLTKAQDLGIEIWSEQDLLDL 686 >gi|312131728|ref|YP_003999068.1| DNA ligase, nad-dependent [Leadbetterella byssophila DSM 17132] gi|311908274|gb|ADQ18715.1| DNA ligase, NAD-dependent [Leadbetterella byssophila DSM 17132] Length = 680 Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 219/713 (30%), Positives = 366/713 (51%), Gaps = 55/713 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + +L +I++++D YY + I D E+D L + + + A P+ + P+ P + Sbjct: 4 KTRIQTLTDQINHYNDRYYLDAVSEISDFEFDTLLKELEELEKAHPEFRQ---PDSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + + V H P LSL ++ E++R + R+ + + + I E K DG Sbjct: 61 VGGSITRNFETVRHQFPMLSLSNTYSEEEIRDWDARVKKGLEGEPYEYI---CELKFDGI 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP---RVLSLNIPEIIEVRGEVYIS 194 ++IRYE G RGDG G+D++A ++ I ++P R + E EVRGE ++ Sbjct: 118 SLSIRYENGILTKGITRGDGVQGDDITANVKTIRSLPLNVRKFEEVLGENFEVRGEGFMP 177 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253 F ALN E G ANPRNAA+G + + + + +R L+ FV+ E F Sbjct: 178 TKVFEALNKEKEIRGEALLANPRNAAAGTFKLQDSSVVASRKLDCFVYQFISGEERFTTH 237 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + L ++ GF V+N ++ + G++S+ +E R TL DG+V KV+ ++ ++ Sbjct: 238 EESFLA-LQSAGFKVSNSWKKVSNIEGVMSFIHEWDEKRHTLECATDGIVIKVNSYAQRE 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG A+SPRW I++K+ + ST LLD+ Q+GRTG +TPVA L PVN+ + ATL Sbjct: 297 KLGFTAKSPRWAIAYKYKAESKSTTLLDVTFQVGRTGTVTPVAELRPVNLSMTTVKRATL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L + +GD V V++AGE+IPKV + V + P FP+ Sbjct: 357 HNADEIERL-----------GLAIGDEVFVEKAGEIIPKVTGVAV--QSLARIPIVFPTA 403 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + ++R+ AA C C Q ++HF+ R A +IE LG+ ++D Sbjct: 404 CPSCGTSLLRNEGE------AAWYCPNSEGCLPQIKGSIEHFIQRKALDIESLGEGKIDI 457 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE--------NILGFGDVSVTNLYDSINKR 545 ++ IR AD++ L+ K+ + F + +V N+ + I K Sbjct: 458 LLENG----LIRDAADLYQLKYEDLIGLEKVHVDEETGKSKKISFKEKTVKNILEGIAKS 513 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L + +F +GIR VG A+ LA ++ S Q N ++ L+ VP VG Sbjct: 514 KEEPLAKLLFGIGIRFVGETTAQKLAAHFKSMQGLM----------NANYEELLAVPDVG 563 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEIENKKLVFTGTLQKIQR 663 + +AQ+I +++Q+ + L HE+ V+ + +E L++TGT + R Sbjct: 564 EKVAQSIRDYFQSESKQHFIAKLQVAGLQMEAVHEEVVTEGNALEGLSLLYTGTFENFSR 623 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715 + + + G + + +S+K +IVG+ G SKL+KA++LG+ I+NEEQFL Sbjct: 624 EELERKIEANGGKLVSGVSKKLSYLIVGEGAGPSKLKKAEELGIPILNEEQFL 676 >gi|256028750|ref|ZP_05442584.1| preprotein translocase subunit SecA [Fusobacterium sp. D11] gi|289766653|ref|ZP_06526031.1| NAD-dependent DNA ligase [Fusobacterium sp. D11] gi|289718208|gb|EFD82220.1| NAD-dependent DNA ligase [Fusobacterium sp. D11] Length = 696 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 224/706 (31%), Positives = 379/706 (53%), Gaps = 50/706 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++++ + D YY +K +I D E+D L + +++ +P + ++ + P +G + Sbjct: 34 LREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYP---QYKEISSPTTSVGASLK 90 Query: 84 LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + FK V H P LSL +NI ++ FI RI + KK + + + LE K+DG I++ Sbjct: 91 ENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISKKQE--LKYCLEVKLDGLSISLT 148 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV + F LN Sbjct: 149 YRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAID--MEIRGEVVLPLASFEKLN 206 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 +E + G + +ANPRNAASG LR+L+ + R L+ + + L + ++ K E ++ + Sbjct: 207 NERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLGFKSHSESIKFL 266 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 +G T I + + R LPY+ DGLV KVDE +L ++G +++ Sbjct: 267 ESMGIKTTGIFELLETSKEIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIGYTSKT 326 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++KF Q ST L + Q+GRTG LTPVA L+ V + G+ + A+LHN I+ Sbjct: 327 PRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNISEIQ- 385 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GDRV +++A E+IP+VV I +R + + P CPIC ++ Sbjct: 386 ----------RKDIRIGDRVFIEKAAEIIPQVVKSIKEDRTGNEKIIEEPVNCPICNHKL 435 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R+ + + +C C A+ +++FVSRDA NI GLG + ++ F D Sbjct: 436 ERE------EGLVDIKCVNE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFI---DLG 485 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + I+ DI+ L+ ++ +ENI G S+ NL +SI + +N ++ I++LGI Sbjct: 486 Y-IKTVVDIYDLKNHREA----LENIDKMGKKSIENLLNSIEESKNRDYDKVIYALGIAE 540 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G ++ LAK ++ I+ ++ ++ L + +G+I A I+ F++ +N Sbjct: 541 IGKVTSKILAKA-------SKNIDKLMTMTFEE---LTSIDGIGEIAANEIIAFFKKEKN 590 Query: 622 ICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 ++ L LK + +N++ K +FTGTL+ R + +E + +LG Sbjct: 591 QKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKN 650 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 651 LSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|255324552|ref|ZP_05365669.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum SK141] gi|255298458|gb|EET77758.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum SK141] Length = 689 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 223/725 (30%), Positives = 374/725 (51%), Gaps = 75/725 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E + L QE+ H + YY +P I D+++DAL +R A+ P+LA P+ P ++ Sbjct: 12 REWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLLALEEEHPELAV---PDSPTQQV 67 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++ + H +SL+ +++ +++ ++ R + + E KIDG Sbjct: 68 GAAPSVG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKIDGLS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYIS 194 I + Y G+ AA RGDG GE+++A R I IP L+ +PE+IE+RGEVY+ Sbjct: 118 IDLVYRNGRLTTAATRGDGTVGEEITANARVIEDIPHELTGTAEYPVPELIEIRGEVYMR 177 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 DF +N+E A G+ +ANPRNAA+G LR + ++ R L HGLG Sbjct: 178 PEDFEEINEERAADGKDKFANPRNAAAGGLRMKDSAEVKKRRLKMVCHGLGAREGFSPTS 237 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q++ + + G PV+ +Q ++ + R +++DGLV KVD+ + Q+ Sbjct: 238 QHDAYKAIAAWGLPVSPYTKQVHSAKEVQDEVAHWAEHRHDAIFEMDGLVVKVDDLASQR 297 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG +R+PRW I++K+ ++ +T+L +I++ +GRTG +TP A +EPV + G+ + ATL Sbjct: 298 ALGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPYAVMEPVFVSGSTVEMATL 357 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+ +K R G + +GD V++++AGE+IP+V+ + +R ++FP Sbjct: 358 HNQSEVK---------RKG--VLIGDTVIIRKAGEIIPEVLGPVREQRDGSEHEWTFPEN 406 Query: 434 CPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-KQQL 491 CP C ++ L P K G A RC +C AQ RL++ SR A +IE LG K + Sbjct: 407 CPACGTK----LAPQKDGD--ADWRCPNTQSCPAQLSARLEYLASRKALDIEALGEKGAM 460 Query: 492 DF----FFKSEDPAFSIR----IPADIFTLQRRQQTSTTKIENILGFGDVSVT----NLY 539 D E F + + +D++T ++ + +K E G+V V NL Sbjct: 461 DLIDNGILVDESELFELTAKKLLASDVYTAKKDTKDKRSKKE-----GNVKVNTAGQNLL 515 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +++ + + R + SL IRHVG AR+LA Y S ++ + A ++ L Sbjct: 516 NNLEEVKGRDFWRVLVSLSIRHVGPIAARALASRYGS-------MDKLRAAKTEE---LA 565 Query: 600 RVPLVGDIIAQAI-----VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654 V VG IAQ+ V++++ + A + EV+ E++ +E +V Sbjct: 566 EVDGVGMTIAQSFHDWFEVDWHRTIVDKWAAAGVAMEVAA-----EEHKEQTLEGLTIVV 620 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG+L+ R A+E + G + +S+KT ++ G N GSK +KA++L + I+NE QF Sbjct: 621 TGSLENFTRDSAKEAIVSRGGKATGSVSKKTSYLVAGANAGSKEDKARELDIPILNESQF 680 Query: 715 LFLLQ 719 LL+ Sbjct: 681 QQLLE 685 >gi|291536367|emb|CBL09479.1| DNA ligase, NAD-dependent [Roseburia intestinalis M50/1] Length = 671 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 220/707 (31%), Positives = 373/707 (52%), Gaps = 55/707 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +I+YH D YY P I D E+D L ++ + P+L + P + Sbjct: 5 EQIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTK---DSPTQHV 61 Query: 79 GGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + V H++P LSL+ +++ E++ F+ ++ ++ DD F +E KIDG Sbjct: 62 GGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMK---EQLDDPE--FVVEYKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + +RYE G A RGDG + GEDV+A + I + + L + PE +E+RGEVY+ Sbjct: 117 SMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLK-DKPEYLEIRGEVYMKNE 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAKG 253 DF +N++ +G+K +ANPRN A+G LR+L+ R L+ FV + + +I Sbjct: 176 DFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRGMDIMTHT 235 Query: 254 Q-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q YE L++ G P+ + T + + + R L YDIDG V K++ +S + Sbjct: 236 QGYEFLKRQ---GIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINRYSDR 292 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG ++ P+W I++K+ ++ T+LLDI++ +GRTG +TP A EPV + G ++ AT Sbjct: 293 ELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSVSRAT 352 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+D+I L D+ +GD ++V ++GE+IPKV ++ +R + F+ P Sbjct: 353 LHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKEVRKEKRTEGWKRFAIPD 401 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C ++ R+ K A +CT C AQ + +FV RDA +I+G G ++ Sbjct: 402 VCPVCGAKTERE------KDTADIKCTSP-NCPAQLERHIINFVGRDAMDIKGFGTVYIE 454 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + I+ ADIF L+ ++ + I+G + + L ++I K + Sbjct: 455 ELVR----LGYIKDIADIFELKDHREELIE--QGIIG-KEKNTDKLLETIEKAKENDAYM 507 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + GI +VG A+++ K + S I+ + D +L+ V VG++ A I Sbjct: 508 LLTGFGIPNVGKAAAKTIMKRFSS----------ILDLEDADRDALMEVDDVGEVSADCI 557 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ + +N + A LK + ++ E + + S + K +V TGTL + R +A E V Sbjct: 558 FRFFHDEKNKEMI-ARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAELVE 616 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G VS +S+KTD ++ G++ GSKL KAQ+LG+ ++ E + LL Sbjct: 617 KYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663 >gi|283954134|ref|ZP_06371659.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 414] gi|283794413|gb|EFC33157.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 414] Length = 647 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 224/694 (32%), Positives = 366/694 (52%), Gaps = 74/694 (10%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED-PNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYDAL R AF + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDALIREL----RAFEEQNKDEILKDSPTQKIAPTVQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L+++W++ED+ F R W K+ + F +EPK DG + + YE GK V A Sbjct: 74 ----LKRMWSMEDV--FGESELRAWAKRAKSEKNFFIEPKFDGASLNLLYENGKLVSGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++ E IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T IT R L F+ G+G+ + F+K E++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFSK-HSEVMQFIRELGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 V+ ++ Y E+ ++R P +DG+V +VDE +L K+LG + P++M + KF Sbjct: 244 VKLCANLDEVLKAYEELLALREKKPMMMDGMVVRVDELALCKELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNFDEIARL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+++ D V V R+G+VIPK+ + R S P CP CQS ++ + G Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ +C + C + + + HFVS+ NI+GLG+ ++ +K + I IF Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----KITTLESIF 459 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L+ + E + GF + + NL ++I + R L FI +LGI H+G A+ L+ Sbjct: 460 YLK------FSDFEGLEGFKEKKINNLLNAIEQARECELFCFITALGIEHIGEVAAKKLS 513 Query: 572 KYYLSYQNFAQEINNIIAHNNDDW-----LSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 LS+ DW + + G+ +A ++ EF + N ++ Sbjct: 514 ---LSF--------------GKDWHKQSFEAYANLEGFGEQMALSLCEFTR--VNHIRID 554 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 K ++ + + E S I K V TGTL + R + + + +LG V+ +S+K+D Sbjct: 555 EFYKLLNLKVEKLEVKSDSAIFGKTFVITGTLSR-PRDEFKALIEKLGGKVNGSVSKKSD 613 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ G+ GSKL KA++LGV ++E F L+++ Sbjct: 614 YVLFGEEAGSKLSKAKELGVNCIDESAFNELIKE 647 >gi|239944478|ref|ZP_04696415.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998] gi|239990936|ref|ZP_04711600.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 11379] gi|291447943|ref|ZP_06587333.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998] gi|291350890|gb|EFE77794.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998] Length = 743 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 219/735 (29%), Positives = 364/735 (49%), Gaps = 69/735 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ + L ++I H YY +P++ D+E+D L R +A+ +P L P+ P + Sbjct: 18 RETHALLAEQIEEHRFRYYVKDQPVVSDAEFDRLLRSLEALEDEYPPL---RTPDSPTQQ 74 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + G V H LSL+ ++ E+L + R+ + D + F E K+DG Sbjct: 75 VAGPYITEFTSVEHRERMLSLDNAFDDEELAAWADRVAKETGTPDHH---FLCELKVDGL 131 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 + + YE G+ AA RGDG +GED++ +R I IP R+ +IP ++E+RGEV+ Sbjct: 132 AVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALVEIRGEVFFPME 191 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQY 255 F LN ++A KP+ANPRNAA+G LR+ +P +R L+ VHG+G + Sbjct: 192 GFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIGAHEGLRIDRLS 251 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + + G P R ++ G+ + R ++ ++IDG+V K+DE LQ +L Sbjct: 252 QAYDLLHSWGLPTARHNRVVDSLAGVREFIAYFGEHRHSVEHEIDGVVVKLDEIPLQGRL 311 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + ATLHN Sbjct: 312 GSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEFATLHN 371 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ++ +K + + +GD V++++AG+VIP+++ +V+ R + F P+ CP Sbjct: 372 QNVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEKAFEMPTHCP 420 Query: 436 ICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 C + +L P K G + RC C AQ ER+ + R + +I+ G Sbjct: 421 ECGT----ELRPMKEGDIDL--RCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAAAAL 474 Query: 495 FKSEDPAFSI-RIPADIFTL--------------------QRRQQTSTTKIENIL----G 529 + +PA + + +D+F+L +R +T KI + G Sbjct: 475 TRPLEPAEPVLKDESDLFSLTIEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQG 534 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 + + + I + L R + L IRHVG A+ LA+ + S + +A Sbjct: 535 EPKKNAVAMLEGIAAAKEAPLARILTGLSIRHVGPVAAQELARQFRSVDRIDEATEEELA 594 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI-----GRHEKNVS 644 + VG IA +I +++ + E L K + G E Sbjct: 595 AADG----------VGPTIAASIKQWFAEDWH---REILRKWREAGVRMADEGSDEDEGP 641 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 +E +V TGTL R A+E + LGA V+ +S+KT ++VGDNPGSK +KA QL Sbjct: 642 RPLEGLTVVVTGTLAGHTRDGAKEALQTLGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQL 701 Query: 705 GVKIMNEEQFLFLLQ 719 V +++E+ F LLQ Sbjct: 702 KVPVLDEDGFAILLQ 716 >gi|220906114|ref|YP_002481425.1| NAD-dependent DNA ligase LigA [Cyanothece sp. PCC 7425] gi|254781305|sp|B8HV17|DNLJ_CYAP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219862725|gb|ACL43064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7425] Length = 738 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 230/748 (30%), Positives = 366/748 (48%), Gaps = 99/748 (13%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I Q EL L Q SY YY PI+ D YD L R + +P+L P+ Sbjct: 20 IRQRVLELRQLVQRASY---AYYVLDAPILEDVVYDQLYRELQDLETQYPELL---TPDS 73 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-----F 128 P ++G + V H IP SLE + + D++ + R R Q + S + Sbjct: 74 PTQRVGEQPATQFVSVQHRIPLYSLENAFAVADMQAWQDRWQRQGQAIGEQSATLRSPEY 133 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEV 187 E KIDG+ + + YE G V A RGDG GED++A +R I +IP R+ + P I+EV Sbjct: 134 VCELKIDGSALALTYENGVLVRGATRGDGVYGEDITANVRTIRSIPLRLDWPDPPPIVEV 193 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL--- 243 RGE ++ + F LN E G +ANPRNAA+G LR+L+ + R L+FF + L Sbjct: 194 RGEAFLPLDVFHRLNQEREQAGESLFANPRNAAAGTLRQLDARIVAKRRLDFFAYTLHLP 253 Query: 244 ------------GKTSEIFA-----------------------------KGQYEMLQKMR 262 + ++ A + Q++ L+ ++ Sbjct: 254 LASARSATQPAAAQQLDLLAVAQSDPAVAAQQLDLSSASQAESVTTHLPQTQWQSLELLQ 313 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 +GF VN + T + YY+ R LPY DG+V K++ LQ+ LG + P Sbjct: 314 QIGFRVNPHRQLCPTLADVRQYYDHWNHGRLDLPYMTDGVVVKLNSLRLQEHLGFTQKFP 373 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 RW I+ K+ +QA T +L+I + +GRTG LTPVA L PV + G ++ ATLHN D + L Sbjct: 374 RWAIAWKYEPEQAVTEVLNISVNVGRTGALTPVAELRPVQLAGTTVSRATLHNRDRLAEL 433 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 D+ +GD+V++ +AGE+IP+++ + R DA+P+ P+ CP C VV Sbjct: 434 -----------DLHIGDKVVIHKAGEIIPEILQVFPELRPADARPYQLPTHCPECGQPVV 482 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 + ++ A RC ++C A + H+V RDA +I+G+G++ + D Sbjct: 483 QPVDE------AVTRCL-NVSCPAIVRGAIVHWVGRDAMDIDGVGEK---LVRQLVDRGL 532 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 + AD++ L Q + ++ N L V+ +I K ++ R ++ LGIRHV Sbjct: 533 VNSV-ADLYRLTVAQLLTLERMGNKLAEKVVA------AIAKSQSRPWSRVLYGLGIRHV 585 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G+ A+ L + S + ++A + +D + V +G IAQ+IV+++Q P N Sbjct: 586 GSVNAQVLTTAFPS-------VERLMAASAED---IEAVHGIGPEIAQSIVQWFQTPANH 635 Query: 623 CAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 +E L ++ ++ + + K V TGTL + R +A+ + Q G V+ Sbjct: 636 SLIEQLSAAGVQLAQDTVAVPPSQLPQPLAGKTFVLTGTLPTLSRDEARSMIGQAGGKVT 695 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +S+KTD ++VG + GSKL+KA QLG+ Sbjct: 696 DSVSKKTDFLVVGADAGSKLDKAGQLGI 723 >gi|123774771|sp|Q47SC6|DNLJ_THEFY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71914739|gb|AAZ54641.1| NAD-dependent DNA ligase [Thermobifida fusca YX] Length = 745 Score = 334 bits (856), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 244/737 (33%), Positives = 367/737 (49%), Gaps = 74/737 (10%) Query: 18 RKELSSLEQEISYHDDCYYQY--SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 R+ + L Q++ DD Y+Y PII D+EYD L + +P L P+ P Sbjct: 31 RERHARLSQDL---DDYSYRYYLGSPIISDAEYDQLMAELRDLEAQYPSLV---TPDSPT 84 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G ++ V H SL+ ++ L + R+ + F E KID Sbjct: 85 QKVGAPISNEFAPVEHLERMQSLDNAFSDAQLEAWAHRV-----SAEVPVDAFLCELKID 139 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVY 192 G + + YEKG+ V AA RGDG GED++ IR I T+P L + PE++EVRGEV+ Sbjct: 140 GLAVALVYEKGRLVRAATRGDGRIGEDITLNIRTIDTVPLRLDESRYPAPELLEVRGEVF 199 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + F LN + G+ P+ANPRNAA+G LR+ +P +R L+ VHG+G + Sbjct: 200 LPVKAFEQLNSRLADEGKPPFANPRNAAAGSLRQKDPRVTASRPLSMLVHGIGAHRGVTI 259 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q + + + G PV++ +R +T + Y R Y+IDG+V KVD+ SL Sbjct: 260 THQSQSYELLAAWGLPVSDRIRVVSTLDEVREYIAYYAEHRHDPEYEIDGVVVKVDDVSL 319 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T+LLDI +GRTG +TP A LEPV + G+ + A Sbjct: 320 QRRLGSTSRAPRWAIAYKYPPEEVTTKLLDIKTSVGRTGRVTPYAVLEPVKVAGSEVEFA 379 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN + +V R G + +GD V+V++AG++IP+VV +V +R +PF P Sbjct: 380 TLHN---------AQEVARKG--VLIGDTVVVRKAGDIIPEVVGPVVEKRTGTERPFVMP 428 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S + + K G + RC C Q ERL R A +IE LG Sbjct: 429 TECPECGSPLGQQ---KEGDV--DLRCPNTRYCKGQLRERLAFIAGRKALDIEALGYVAA 483 Query: 492 DFFFKSEDPA-FSIRIPADIFTLQRRQ-----------QTSTTKIENILGFGDVS----- 534 + +PA +R D+F+L Q T+ KI+ G V Sbjct: 484 TALTQPLEPAEPPLRDEGDLFSLTVEQLLPIRTLVLDPDTAEPKIDPKTGKPKVVSFFAN 543 Query: 535 --------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 V L+ + + + L R + +L IRHVG A LA+++ S AQ Sbjct: 544 QKGEPKKIVEKLFQQLEEAKKRPLWRVLVALSIRHVGPRAAEDLARHFRSLDAIAQASEE 603 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 L V +G IA++IV+++ + VE K + + E+ Sbjct: 604 ----------ELEAVEGIGPTIARSIVDWFSVDWHREIVE---KWRAAGVRMEEEGADDG 650 Query: 647 ---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 ++ V TGTL+K R A+E V +LG V+ +SRKTD ++VG NPGSK +KA + Sbjct: 651 PRLLDGITTVITGTLEKYSRDGAKEAVQKLGGRVTGSVSRKTDFVVVGANPGSKYDKAVK 710 Query: 704 LGVKIMNEEQFLFLLQQ 720 LGV I++E F LL Q Sbjct: 711 LGVPILDEAGFEVLLTQ 727 >gi|161723110|ref|YP_288664.2| NAD-dependent DNA ligase LigA [Thermobifida fusca YX] Length = 731 Score = 334 bits (856), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 244/737 (33%), Positives = 367/737 (49%), Gaps = 74/737 (10%) Query: 18 RKELSSLEQEISYHDDCYYQY--SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 R+ + L Q++ DD Y+Y PII D+EYD L + +P L P+ P Sbjct: 17 RERHARLSQDL---DDYSYRYYLGSPIISDAEYDQLMAELRDLEAQYPSLV---TPDSPT 70 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+G ++ V H SL+ ++ L + R+ + F E KID Sbjct: 71 QKVGAPISNEFAPVEHLERMQSLDNAFSDAQLEAWAHRV-----SAEVPVDAFLCELKID 125 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVY 192 G + + YEKG+ V AA RGDG GED++ IR I T+P L + PE++EVRGEV+ Sbjct: 126 GLAVALVYEKGRLVRAATRGDGRIGEDITLNIRTIDTVPLRLDESRYPAPELLEVRGEVF 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + F LN + G+ P+ANPRNAA+G LR+ +P +R L+ VHG+G + Sbjct: 186 LPVKAFEQLNSRLADEGKPPFANPRNAAAGSLRQKDPRVTASRPLSMLVHGIGAHRGVTI 245 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q + + + G PV++ +R +T + Y R Y+IDG+V KVD+ SL Sbjct: 246 THQSQSYELLAAWGLPVSDRIRVVSTLDEVREYIAYYAEHRHDPEYEIDGVVVKVDDVSL 305 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T+LLDI +GRTG +TP A LEPV + G+ + A Sbjct: 306 QRRLGSTSRAPRWAIAYKYPPEEVTTKLLDIKTSVGRTGRVTPYAVLEPVKVAGSEVEFA 365 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN + +V R G + +GD V+V++AG++IP+VV +V +R +PF P Sbjct: 366 TLHN---------AQEVARKG--VLIGDTVVVRKAGDIIPEVVGPVVEKRTGTERPFVMP 414 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S + + K G + RC C Q ERL R A +IE LG Sbjct: 415 TECPECGSPLGQQ---KEGDV--DLRCPNTRYCKGQLRERLAFIAGRKALDIEALGYVAA 469 Query: 492 DFFFKSEDPA-FSIRIPADIFTLQRRQ-----------QTSTTKIENILGFGDVS----- 534 + +PA +R D+F+L Q T+ KI+ G V Sbjct: 470 TALTQPLEPAEPPLRDEGDLFSLTVEQLLPIRTLVLDPDTAEPKIDPKTGKPKVVSFFAN 529 Query: 535 --------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 V L+ + + + L R + +L IRHVG A LA+++ S AQ Sbjct: 530 QKGEPKKIVEKLFQQLEEAKKRPLWRVLVALSIRHVGPRAAEDLARHFRSLDAIAQASEE 589 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 L V +G IA++IV+++ + VE K + + E+ Sbjct: 590 ----------ELEAVEGIGPTIARSIVDWFSVDWHREIVE---KWRAAGVRMEEEGADDG 636 Query: 647 ---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 ++ V TGTL+K R A+E V +LG V+ +SRKTD ++VG NPGSK +KA + Sbjct: 637 PRLLDGITTVITGTLEKYSRDGAKEAVQKLGGRVTGSVSRKTDFVVVGANPGSKYDKAVK 696 Query: 704 LGVKIMNEEQFLFLLQQ 720 LGV I++E F LL Q Sbjct: 697 LGVPILDEAGFEVLLTQ 713 >gi|171920530|ref|ZP_02695360.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903225|gb|EDT49514.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 673 Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 223/714 (31%), Positives = 380/714 (53%), Gaps = 64/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + +++ L+Q++ + YY P + D YD R + +A+P + N Sbjct: 1 MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130 P ++GG ++ KV H P LSL ++ DLRKF Q + S+ + + Sbjct: 58 PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFD-------QDNQNASVDLKGYVV 110 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189 EPKIDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRG Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EVY++ +DF +ND + +K +ANPRNAA+G LR L+ + + R L+ F++ L E Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + K YE +Q ++ F V++ + + +T +++ + +R+ L Y IDG+V K++ Sbjct: 230 LGIKTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINN 289 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIV 349 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVNLSKRLANSVPY 398 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ Sbjct: 399 ESITNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCINIEGMSD 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545 ++ F+ A I+ AD++ LQ+ ++ S KI+ D S +NL +SIN Sbjct: 453 AIINKFY----DANLIKNVADLYYLQKHKEFILASDFKIK------DKSFSNLINSINNS 502 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + SLE + + GIRHVG +A+ LAK + + + H N D L+ V G Sbjct: 503 KTRSLEFLLTAFGIRHVGPNLAKKLAKQFKTMTT--------LMHANFDELT--NVDACG 552 Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + A +++ ++ + NIC + L ++ + I N+ E +NK V TG+ Sbjct: 553 EKAALSLINWFNDDHNICLINQLEQVGVNMEYIDDFIYDENINIVDEYKNKTFVITGSFS 612 Query: 660 KIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 I R + + + + A V +S+KTD ++ G G+KLEKA+ LGVKI+ E Sbjct: 613 -ISRDEIKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKIIENE 665 >gi|254422498|ref|ZP_05036216.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7335] gi|196189987|gb|EDX84951.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7335] Length = 694 Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 237/726 (32%), Positives = 359/726 (49%), Gaps = 73/726 (10%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L IE EL S Q+ SY YY P + DS YD L R + +P L S+ P Sbjct: 20 LEIETRAAELRSQLQKASY---AYYVLDAPELPDSVYDRLYRELQTLEDQYPGLQTSDSP 76 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++G E V H+IP SLE ++ E+ + R R + D E Sbjct: 77 T---QRVGAEPAEQFTSVRHNIPLYSLENAFDTEEYLDWQARWQRL--EPDVGETTAVAE 131 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI------PEII 185 KIDG + + YE G + RGDG +GED++ +R I TIP L L+I P ++ Sbjct: 132 LKIDGNALALTYENGMLIRGVTRGDGIAGEDITQNVRTIRTIP--LRLHIENGQAPPPVV 189 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL- 243 EVRGE ++ + F +N + A G +ANPRNAA+G LR+L+ + R L+FF + + Sbjct: 190 EVRGEAFLPLDVFDDINQKRQAEGTALFANPRNAAAGTLRQLDAKIVAERQLDFFAYTVL 249 Query: 244 ---GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G Q+ L ++ L F VN + + SYY+E + R LPY D Sbjct: 250 MPEGTGDLDAPTTQWTALDLLQTLRFRVNPHRKLCQRAAEVASYYDEWEEKRHDLPYLTD 309 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K+D F LQ +LG + PRW I+ K+ ++ T L I +Q+GRTG +TPVA L P Sbjct: 310 GVVVKLDSFELQDRLGFTNKFPRWAIALKYPAEEVPTTLNKITVQVGRTGAITPVAELSP 369 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G ++ ATLHN D + L D+ +GD V+V++AGE+IP+VV ++ + Sbjct: 370 VQLAGTTVSRATLHNADRLIEL-----------DLHLGDTVVVRKAGEIIPEVVRVLSDL 418 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R A+ + P+ CP+C VV+ G+ A RC +C A L+H+ SRDA Sbjct: 419 RPKGAKAYQLPTNCPVCDQPVVK----PEGE--AVTRCVNQ-SCPAILSGSLRHWASRDA 471 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTN 537 +I GLG++ + + D + I AD++ L +E++L G Sbjct: 472 LDISGLGERLVQSWI---DQSVVTSI-ADLYDL---------TLEDLLPLERMGKQLANK 518 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +I + + ++ LGIR VG+ A+ LA + S A ++IA Sbjct: 519 LLQAIALSKQKPWAKVLYGLGIRLVGSTNAQILANRFPSVAMLAAADESVIAQ------- 571 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRN---ICAVEA--LLKEVSPSIGRHEKNVSSEIENKKL 652 + +G IAQ++ +++Q P N I +EA L E +P + + K Sbjct: 572 ---IYGIGPEIAQSVRQWFQLPANQQLIARLEAAGLQLEATP---QKIDQRPQPLMGKSF 625 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL ++R +A+ + G VS S KTD ++VG+N GSK KA +LG+K + E Sbjct: 626 VLTGTLPTLKRAEAKAQIQAAGGRVSGAPSAKTDYVVVGENAGSKQAKADELGLKQLTEA 685 Query: 713 QFLFLL 718 + + LL Sbjct: 686 ELIELL 691 >gi|268679995|ref|YP_003304426.1| DNA ligase, NAD-dependent [Sulfurospirillum deleyianum DSM 6946] gi|268618026|gb|ACZ12391.1| DNA ligase, NAD-dependent [Sulfurospirillum deleyianum DSM 6946] Length = 648 Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 224/686 (32%), Positives = 357/686 (52%), Gaps = 68/686 (9%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY PI D EYD L A P A D + P ++GG + K +H Sbjct: 19 AYYVDDAPIASDEEYDRLYHEILAFEKENPLFA---DESSPTKRVGGMVLEGFNKASHKA 75 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 S+E +++ DL +I R+ KK + F EPK DG + + Y+KG A Sbjct: 76 RMWSMEDVFDEHDLDAWIERV-----KKVKENFTFYCEPKFDGASMNLIYDKGVLQQAIT 130 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GEDV+ ++ I +IP L + +IE+RGEV I K DF LN+E + + Sbjct: 131 RGDGSIGEDVTQNVKTIGSIP--LQIAYEGLIEIRGEVVIKKADFECLNEERLHTNEPLF 188 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRC---LGFPV 268 ANPRNAA+G LR+L+ T +T R L F+ G+G+ + Q + +KMR LGF Sbjct: 189 ANPRNAAAGSLRQLD-TSVTAKRKLMFYPWGIGENQLV----QTRLSEKMRFVYDLGFLQ 243 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 + + Y+E+ R + +DG+V KVDE +LQ++LG + P+WM++ Sbjct: 244 PPRIVVTQNVEDVHMLYHELIETRDAIEMMMDGMVVKVDEIALQEELGYTVKYPKWMVAF 303 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 KF + T+L I +Q+GRTG++TPVA +E VNI G ++ ATLHN D I+ Sbjct: 304 KFPAIEKVTKLRAITLQVGRTGVVTPVAEVEAVNIEGVVVERATLHNFDEIE-------- 355 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 +DIR+GD V++ R+G+VIPK++ ++V R P CP+C ++ + Sbjct: 356 ---RKDIRIGDSVIIIRSGDVIPKIIKVLVERRDGTEVIPKRPLVCPVCGGELLDE---- 408 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 G L+ +C L+C A+ + + HF S+ A NI+GLG + ++ + ++ ++ Sbjct: 409 -GALI---KCQ-NLSCDARVVGAMIHFASKKALNIDGLGDKIIEQLY-AQKVVLHVK--- 459 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D++TL Q + + GF NL D+I + + ++LE+FI +LGI H+G A+ Sbjct: 460 DLYTLSLEQLLA------LEGFKVKKAQNLLDAIAQSKGVALEKFINALGIEHIGEVAAK 513 Query: 569 SLAKYY-LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 +A+ + L + E +I + G+ +A+++VEF N + Sbjct: 514 KIARTFGLEWLEATHE-------------QIIGLEGFGEEMAKSLVEFIH--VNAVETKE 558 Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 L+ ++P + E S K +V TG++ K R + + + LGA VS +S+KTD Sbjct: 559 LMGIIAPVASKLEIT-ESVFTGKTVVLTGSMSK-SRDEMKAMLESLGAKVSGSVSKKTDF 616 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQ 713 +I G+ GSKL+KA +LGVK ++E + Sbjct: 617 VIFGEEAGSKLDKALELGVKTLSEAE 642 >gi|290580089|ref|YP_003484481.1| DNA ligase [Streptococcus mutans NN2025] gi|254996988|dbj|BAH87589.1| DNA ligase [Streptococcus mutans NN2025] Length = 652 Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 228/705 (32%), Positives = 362/705 (51%), Gaps = 71/705 (10%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ ++ L Q ++ + YY P + D+EYD L R + FP+ S N P ++ Sbjct: 2 KERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDILS---NSPTHR 58 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + K H P SL+ ++ E+L F RI + + D + E KIDG Sbjct: 59 VGDLVLDGFEKYRHEYPLFSLQDAFSREELNAFDRRIKAEFPQAD-----YLAELKIDGL 113 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISK 195 I++ Y G+ A RGDG GE+++ ++ + IP L++PE I+ VRGE Y+ K Sbjct: 114 SISLTYVNGRLRVGATRGDGTVGENITENLKRVRDIP----LHLPENIDLTVRGECYLPK 169 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKG 253 F +N E G +ANPRNAA+G LR+L+ + + F G T+ A Sbjct: 170 ASFKTINAERRENGETEFANPRNAAAGTLRQLDTKVVAKRKLATFIYQEAGPTA---ASS 226 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q +L+ LGF VN +++ I + ++ R+ L YDIDG+V KV+ +LQ+ Sbjct: 227 QEAVLESFAKLGFTVNPRHIISSSMDAIWQFIEDVAKERAELAYDIDGVVIKVNSLALQE 286 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG ++PRW I++KF ++ + +L +D +GRTG++TP A L PV + G ++ ATL Sbjct: 287 ALGFTVKAPRWAIAYKFPAEEKTAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATL 346 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPS 432 HN DYI +DIR+GD V+V +AG++IP V+ ++ N+R D Q P P+ Sbjct: 347 HNVDYI-----------AEKDIRIGDIVVVYKAGDIIPAVLHVVENKR--DQQVPLPIPT 393 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP CQS ++ + A RC C AQ E L HF SRDA NI GLG ++ Sbjct: 394 VCPSCQSELIHFEDE------VALRCVNP-RCPAQLKEELIHFASRDAMNIIGLGPAIVE 446 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F +E I ADI+ Q + + + G + S T LY +I + S E+ Sbjct: 447 KLFTAE----LICDVADIY------QLTPENLMQLEGIKEKSATKLYKAIQASKANSAEK 496 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +F LGIRHVG++ +R L + + S + A + IA + +G +IA+++ Sbjct: 497 LLFGLGIRHVGSKASRLLMERFESLEQLAAADFDDIAAIDG----------LGIVIAESL 546 Query: 613 VEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++ + LL E+ + +G+ + + + +V TG L + R +A Sbjct: 547 KTYFAT----AGAQKLLIELKTAGLNLTYLGKKTAS-DAALTGMTIVLTGKLANLTRSQA 601 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +E + LGA V +S+KT ++I G + GSKLEKA+ LG++I +E Sbjct: 602 KEKLQSLGANVVGSVSKKTSLVIAGSDAGSKLEKAKTLGIEIKDE 646 >gi|294784746|ref|ZP_06750034.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27] gi|294486460|gb|EFG33822.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27] Length = 696 Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 228/721 (31%), Positives = 385/721 (53%), Gaps = 64/721 (8%) Query: 19 KELSSLEQEISYHDD------CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +EL+ LE+ + +D YY + +I D E+D L + +++ +P + ++ + Sbjct: 23 QELNDLEKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYP---QYKEIS 79 Query: 73 GPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +G + + FK V H+ P LSL +NI ++ FI RI + K+ + + + LE Sbjct: 80 SPTTSVGASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPKEQE--LKYCLE 137 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG I++ Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV Sbjct: 138 VKLDGLSISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAID--MEIRGEV 195 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 + F LN+E + G + +ANPRNAASG LR+L+ + R L+ + + L + ++ Sbjct: 196 VLPLASFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKGRGLDAYFYFLVEADKLG 255 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K E ++ + +G T I + + R LPY+ DGLV KVDE + Sbjct: 256 LKSHSESIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEIN 315 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L ++G +++PRW I++KF Q ST L + Q+GRTG LTPVA L+ V + G+ + Sbjct: 316 LWNEIGYTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVELSGSKVKR 375 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN I+ +DIR+GDRV +++A E+IP+VV I ER + + Sbjct: 376 ASLHNISEIQ-----------RKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEE 424 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C ++ R+ + + +C C A+ +++FVSRDA NI GLG + Sbjct: 425 PVCCPVCNHKLERE------EGLVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKI 477 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F D + I+ DIF L+ ++ +ENI G S+ NL +SI + +N Sbjct: 478 VEKFI---DLGY-IKTVVDIFDLKEHREA----LENIDKMGKRSIENLLNSIEESKNRDY 529 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++ I+SLGI +G ++ LAK ++ I+ ++ ++ L + +G+I A Sbjct: 530 DKVIYSLGIPFIGKVASKILAKA-------SKNIDKLMTMTFEE---LTSIEGIGEIAAN 579 Query: 611 AIVEFYQNPRNICAVEAL--------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 I+ F++ +N +E+L +KE ++ +N++ K +FTGTL+ Sbjct: 580 EIIAFFKKEKNQKIIESLKEKGLKFEIKESETNV----QNINPNFAGKNFLFTGTLKHFT 635 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQY 721 R + +E + +LG + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L ++ Sbjct: 636 REQIKEEIEKLGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKF 695 Query: 722 N 722 + Sbjct: 696 D 696 >gi|33241290|ref|NP_876232.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81663882|sp|Q7V9J2|DNLJ_PROMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33238820|gb|AAQ00885.1| NAD-dependent DNA ligase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 685 Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 218/730 (29%), Positives = 373/730 (51%), Gaps = 84/730 (11%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K +S L ++ + YY P+I D+ +D L R + +P L P+ P ++ Sbjct: 8 KRISELRSLLNKANHAYYILDSPLIEDAVFDRLYRELIELEKQYPSLV---TPDSPSQRL 64 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + + H IP SL+ +N ++L + +R+ QK + E KIDG Sbjct: 65 GNKPATKFESIKHRIPLQSLDNAFNFDELNYWHSRM----QKHLKSHSAMVCELKIDGNA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKND 197 + + Y G A RGDG GE+++A ++ I +IP L L N P +E+RGE +I Sbjct: 121 LALSYVNGVLTRGATRGDGAEGEEITANVKTIVSIPLSLHLQNPPAWVEIRGEAFIPNKV 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL--------GKTSE 248 F++LN E + ++ +ANPRNA SG LR+L+ + +R+L+FF + + G+T Sbjct: 181 FISLNKERLKEEKQLFANPRNACSGTLRQLDSRIVASRHLDFFAYTIHLPDDWIPGETDP 240 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 KGQ+E L ++ GF VN + + + + + + R LPY DG+V K+D+ Sbjct: 241 KKPKGQWEALLWLKAAGFRVNPNAKLISQPDQVEKFCIDWEKRRHQLPYTTDGIVIKIDD 300 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F LQK LG ++PRW I+ K+ ++A T+L + Q GRTG +TPVA P+ +GG L+ Sbjct: 301 FKLQKTLGITQKAPRWAIALKYPAEEAPTQLNKLIFQTGRTGTVTPVAEFNPIPLGGTLV 360 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN + + L DI GD +++++AGE+IP+V+ +I R +A+ Sbjct: 361 SKATLHNANRLSEL-----------DIHEGDTIVIRKAGEIIPEVIRVIKELRPNNAKKL 409 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP C S+++++ TG+ AA +C C A L+H+VS+ A NI+G G Sbjct: 410 VLPEKCPECNSKLLKE----TGE--AATKCLNN-DCPAILRGVLRHWVSKGAMNIDGFGT 462 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ K + I+ A I+ L+ + +EN+ G S L IN + Sbjct: 463 KLVEQLVKRK----IIKSIAGIYELKEKN------LENLERMGTKSAEKLLIEINNSKKQ 512 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-------QEINNIIAHNNDDWLSLIRV 601 + ++ LGI H+G A+++A+ + S A + I+NI Sbjct: 513 PWHKQLYGLGILHIGEANAKAIAEVFPSISLLADAAIASPESISNIYG------------ 560 Query: 602 PLVGDIIAQAIVEFYQNPRNICAV-EALLKEVSP-SIGRHEKNVSSEIEN---------- 649 +G I +++ +++ C++ + L+KE+ I N I+N Sbjct: 561 --IGSEITESLHKWFN-----CSINQNLIKELKDLGIALERVNEEGAIDNILMQEKLQFS 613 Query: 650 -KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K V TGT+ + R +E + + G V++ +S KT+ ++ G+ PG+KL+KA++LG+K+ Sbjct: 614 GKTFVITGTMPSLSRANLEELIEREGGKVNSSVSSKTNYLVAGEKPGNKLKKAKELGIKV 673 Query: 709 MNEEQFLFLL 718 +NE++ + L+ Sbjct: 674 INEQELMTLI 683 >gi|256846124|ref|ZP_05551582.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2] gi|256719683|gb|EEU33238.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2] Length = 696 Score = 333 bits (855), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 228/721 (31%), Positives = 385/721 (53%), Gaps = 64/721 (8%) Query: 19 KELSSLEQEISYHDD------CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +EL+ LE+ + +D YY + +I D E+D L + +++ +P + ++ + Sbjct: 23 QELNDLEKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYP---QYKEIS 79 Query: 73 GPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +G + + FK V H+ P LSL +NI ++ FI RI + K+ + + + LE Sbjct: 80 SPTTSVGASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPKEQE--LKYCLE 137 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG I++ Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV Sbjct: 138 VKLDGLSISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAID--MEIRGEV 195 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 + F LN+E + G + +ANPRNAASG LR+L+ + R L+ + + L + ++ Sbjct: 196 VLPLASFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKGRGLDAYFYFLVEADKLD 255 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K E ++ + +G T I + + R LPY+ DGLV KVDE + Sbjct: 256 LKSHSESIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLVIKVDEIN 315 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L ++G +++PRW I++KF Q ST L + Q+GRTG LTPVA L+ V + G+ + Sbjct: 316 LWNEIGYTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVELSGSKVKR 375 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN I+ +DIR+GDRV +++A E+IP+VV I ER + + Sbjct: 376 ASLHNISEIQ-----------RKDIRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKVIEE 424 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C ++ R+ + + +C C A+ +++FVSRDA NI GLG + Sbjct: 425 PVCCPVCNHKLERE------EGLVDIKCINE-ECPAKVQGEIEYFVSRDALNIMGLGSKI 477 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F D + I+ DIF L+ ++ +ENI G S+ NL +SI + +N Sbjct: 478 VEKFI---DLGY-IKTVVDIFDLKEHREA----LENIDKMGKRSIENLLNSIEESKNRDY 529 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++ I+SLGI +G ++ LAK ++ I+ ++ ++ L + +G+I A Sbjct: 530 DKVIYSLGIPFIGKVASKILAKA-------SKNIDKLMTMTFEE---LTSIEGIGEIAAN 579 Query: 611 AIVEFYQNPRNICAVEAL--------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 I+ F++ +N +E+L +KE ++ +N++ K +FTGTL+ Sbjct: 580 EIIAFFKKEKNQKIIESLKEKGLKFEIKESETNV----QNINPNFAGKNFLFTGTLKHFT 635 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQY 721 R + +E + +LG + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L ++ Sbjct: 636 REQIKEEIEKLGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKF 695 Query: 722 N 722 + Sbjct: 696 D 696 >gi|228469580|ref|ZP_04054573.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3] gi|228308930|gb|EEK17605.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3] Length = 679 Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 216/718 (30%), Positives = 363/718 (50%), Gaps = 68/718 (9%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ L + I H+ YY + P I D++YDAL +R + P+ A DP P ++G Sbjct: 9 EIEQLRKTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPEFA---DPTSPSLRVG 65 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + N + +V H P LSL +N +++ + R D + + E K DG+ I Sbjct: 66 RDRNDAFVQVAHEQPMLSLSNTYNYDEIAEICKRTDTLLATDD---VPWVAEMKYDGSSI 122 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSL-NIPEI----IEVRGEVYI 193 ++ YE+G A RGDG G+DV+ +R I ++P R+ S+ P+ IEVRGEV + Sbjct: 123 SLIYEEGVLARAVTRGDGTLGDDVTVNVRTIQSVPLRLHSIAGHPDYTRGRIEVRGEVLL 182 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEI 249 +F LN E A P+ANPRNAA+G L+ LN + + + ++++ L + + Sbjct: 183 PFKEFERLNGERTAESEAPFANPRNAAAGTLKTLNSRIVAQRRLLCICYYLYALDDETRL 242 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 YE ++ + +GF +++ + Y +E R LPY DG+V KVD Sbjct: 243 -PDSYYERMKLLEEMGFDTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGIVLKVDSL 301 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+ LG A+SPRW ++K+ + A LL +D Q+GR+GI+TPVA +EPV I G ++ Sbjct: 302 TQQRVLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGIVTPVANVEPVLISGTVVR 361 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHNE++IK L D+ D V +++ GE+IPK+ + + R P+A+P Sbjct: 362 RATLHNEEFIKSL-----------DLHYHDYVYIEKGGEIIPKITAVEPSLRRPEAEPVR 410 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + ++ ++ G + C AC Q + R++H+ +R A +I +G + Sbjct: 411 LPERCPACGA-PLQQIDGSVG-----YYCVNSYACPPQIMGRIEHYCTRRAADI-NVGPE 463 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F I D++ L + + + + F + S+ NL SI + + Sbjct: 464 TIDALFDRH----LIENIDDLYKL------TASDLAQLPNFKEKSINNLLASIEQSKGRP 513 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R ++ +GIR VG A++LA+++ S AQ L +P VG IA Sbjct: 514 FARLLYGIGIRFVGEGTAKTLARHFQSIDRLAQATA----------YELQALPDVGPKIA 563 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--------SSEIENKKLVFTGTLQKI 661 + +V F+ RN + L+ E+ R E+ S+ +E +++V +G+ + Sbjct: 564 EQVVYFFSLERN----QQLIAELQRCGVRLEECAEEATDMPQSNRLEGERIVISGSFTQH 619 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 R + ++ + Q G +S +T +++G + G SK KA+QLG+ ++ EE+FL L Sbjct: 620 SRDEYKQLIEQHGGTNVGSISSRTTFVLMGSDMGPSKRAKAEQLGIPLVTEEEFLARL 677 >gi|254776288|ref|ZP_05217804.1| NAD-dependent DNA ligase LigA [Mycobacterium avium subsp. avium ATCC 25291] Length = 681 Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 225/712 (31%), Positives = 361/712 (50%), Gaps = 49/712 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ L + + H YY PII D+E+DAL A+ P+L ++ P + Sbjct: 2 RRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPELRVADSPTQLVGG 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + + + H LSL+ +++ ++L + R+ + + + E KIDG Sbjct: 62 AGFATDFA--EAAHLERMLSLDDVFDTDELIAWSNRV----ENEIGKDPHYLCELKIDGV 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193 +++ Y G+ AA RGDG GEDV+ R I +P LS +P ++EVRGEV+ Sbjct: 116 ALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSPSDDFPVPALLEVRGEVFF 175 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 DF ALN ++ G+ P+ANPRN+A+G LR+ NP R L HG+G+T K Sbjct: 176 LLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGRTEGFSPK 235 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q+E + G PV + + + Y+ E R L ++IDG+V KVD+ Sbjct: 236 TQHEAYTALSVWGLPVAEQTARVRGLAAVQERIGYWGEH---RYELQHEIDGVVVKVDDV 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +R+PRW +++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + Sbjct: 293 ALQRRLGATSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAGSTVG 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + +V R G + +GD V++++AG+VIP+V+ +V+ R + F Sbjct: 353 LATLHN---------AAEVKRKG--VLIGDTVMIRKAGDVIPEVLGPVVDLRDGTEREFV 401 Query: 430 FPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C + L P K G A RC +C AQ ER+ H R A +IEGLG Sbjct: 402 MPTTCPECGT----PLAPAKEGD--ADIRCPNARSCPAQLRERVFHVAGRGALDIEGLGY 455 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + A I D+F L T G + T L ++ K + + Sbjct: 456 EAATALLT----AGVIADEGDLFALTEDDLLRTELFRTKAGTLSANGTRLLQNLQKAKKV 511 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L R + +L IRHVG AR+LA + ++++I++ + + L V VG I Sbjct: 512 ALWRVLVALSIRHVGPTAARALATEF-------GDLDSIMSASTE---RLAAVEGVGPTI 561 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A A+ E++ + V+ + +V +E +V TG+L R A+E Sbjct: 562 AAALTEWFTVDWHRAIVDKWRAAGVRMADERDASVPRTLEGLTVVVTGSLAGFSRDDAKE 621 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G + +S+KTD ++ GD+PGSK +KA +LGV I++E+ F LL + Sbjct: 622 AILARGGKAAGSVSKKTDYVVAGDSPGSKYDKAVELGVPILDEDGFRKLLAE 673 >gi|240145659|ref|ZP_04744260.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82] gi|257202247|gb|EEV00532.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82] Length = 671 Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 222/708 (31%), Positives = 374/708 (52%), Gaps = 57/708 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +I+YH D YY P I D E+D L ++ + P+L + P + Sbjct: 5 EQIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTK---DSPTQHV 61 Query: 79 GGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + V H++P LSL+ +++ E++ F+ ++ ++ DD F +E KIDG Sbjct: 62 GGTAKRTAGVLVHHNVPMLSLQDVFSKEEVVDFVEQMK---EQLDDPE--FVVEYKIDGL 116 Query: 138 MITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + +RYE G A RGDG + GEDV+A + I + + L + PE +E+RGEVY+ Sbjct: 117 SMALRYENGDLSLALTRGDGVNFGEDVTANAKVISDVKKKLK-DKPEYLEIRGEVYMKNE 175 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS--EIFAKG 253 DF +N++ +G+K +ANPRN A+G LR+L+ R L+ FV + + +I Sbjct: 176 DFDRVNEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRGMDIMTHT 235 Query: 254 Q-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q YE L++ G P+ + T + + + R L YDIDG V K++ +S + Sbjct: 236 QGYEFLKRQ---GIPIIEDYKVCKTADEVWNAITAIGENRGNLGYDIDGAVIKINRYSDR 292 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG ++ P+W I++K+ ++ T+LLDI++ +GRTG +TP A EPV + G ++ AT Sbjct: 293 ELLGNTSKVPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSVSRAT 352 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFP 431 LHN+D+I L D+ +GD ++V ++GE+IPKV + + E+ PD + F P Sbjct: 353 LHNQDFIDDL-----------DVGIGDTIVVYKSGEIIPKVKE-VRKEKRPDGWKRFMIP 400 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C ++ R+ K A +CT C AQ + +FV RDA +I+G G + Sbjct: 401 DVCPVCGAKTERE------KDTADIKCTSP-NCPAQLERHIINFVGRDAMDIKGFGTVYI 453 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + I+ ADIF L+ ++ + I+G + + L ++I K + Sbjct: 454 EELVR----LGYIKDIADIFELKDHREELIE--QGIIG-KEKNTDKLLETIEKAKENDAY 506 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + GI +VG A+++ K + S I+ + D +L+ V VG++ A Sbjct: 507 MLLTGFGIPNVGKAAAKTIMKRFPS----------ILDLEDADRDALMEVDDVGEVSADC 556 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I F+ + +N + A LK + ++ E + + S + K +V TGTL + R +A E V Sbjct: 557 IFRFFHDEKNKEMI-ARLKSLGVNMEAEETETIDSAVSGKTVVITGTLPTLGRKEAAELV 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G VS +S+KTD ++ G++ GSKL KAQ+LG+ ++ E + LL Sbjct: 616 EKYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELFVLL 663 >gi|311740579|ref|ZP_07714406.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium ATCC 33035] gi|311304099|gb|EFQ80175.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium ATCC 33035] Length = 689 Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 221/721 (30%), Positives = 369/721 (51%), Gaps = 67/721 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E + L QE+ H + YY +P I D+++DAL +R A+ P+LA P+ P ++ Sbjct: 12 REWNDLAQEVRRHRNLYYN-GEPAIPDADFDALFQRLLALEEEHPELAV---PDSPTQQV 67 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + + H +SL+ +++ +++ ++ R + + E KIDG Sbjct: 68 GAAPSAG-EDIEHLERMMSLDNVFSAGEMQDWLDRT---------PAKTYLTELKIDGLS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYIS 194 I + Y G+ AA RGDG GE+++A R I IP L+ +PE+IE+RGEVY+ Sbjct: 118 IDLVYRNGRLTTAATRGDGTVGEEITANARVIEDIPHELTGTDEYPVPELIEIRGEVYMR 177 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 DF +N+E A G+ +ANPRNAA+G LR +P ++ R L HGLG Sbjct: 178 PEDFEEINEERAADGKDKFANPRNAAAGGLRMKDPAEVKKRRLKMVCHGLGAREGFSPSS 237 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q++ + + G PV+ +Q + + R +++DGLV KVD+ + Q+ Sbjct: 238 QHDAYKAIAAWGLPVSPYTKQVYSAKEVQDEVAHWAEHRHDAIFEMDGLVVKVDDLASQR 297 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG +R+PRW I++K+ ++ +T+L +I++ +GRTG +TP A +EPV + G+ + ATL Sbjct: 298 ALGATSRAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPYAVMEPVFVSGSTVEMATL 357 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN+ +K R G + +GD V++++AGE+IP+V+ + +R ++FP Sbjct: 358 HNQSEVK---------RKG--VLIGDTVIIRKAGEIIPEVLGPVREQRDGSEHEWTFPEN 406 Query: 434 CPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG-KQQL 491 CP C ++ L P K G A RC +C AQ RL++ SR A +IE LG K + Sbjct: 407 CPACGTK----LAPQKDGD--ADWRCPNTQSCPAQLSARLEYLASRKALDIEALGEKGAM 460 Query: 492 DF----FFKSEDPAFSIR----IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 D E F + + +D++T ++ + +K E + + NL ++ Sbjct: 461 DLIDNGILVDESELFELTAEKLLASDVYTAKKDTKDKRSKKEGNAKV-NTAGQNLLSNLE 519 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + + R + SL IRHVG AR+LA Y S ++ + A ++ L V Sbjct: 520 EVKGRDFWRVLVSLSIRHVGPIAARALASRYGS-------MDRLRAAKTEE---LAEVDG 569 Query: 604 VGDIIAQAI-----VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 VG IAQ+ V++++ + A + EV+ E + +E +V TG+L Sbjct: 570 VGMTIAQSFHDWFEVDWHRTIVDKWAAAGVAMEVAA-----EDHKEQTLEGLTIVVTGSL 624 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R A+E + G + +S+KT ++ G N GSK +KA++L + I+NE QF LL Sbjct: 625 ENFTRDSAKEAIVSRGGKATGSVSKKTSYLVAGANAGSKEDKARELDIPILNESQFQQLL 684 Query: 719 Q 719 + Sbjct: 685 E 685 >gi|125623311|ref|YP_001031794.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris MG1363] gi|166215816|sp|A2RIF3|DNLJ_LACLM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|124492119|emb|CAL97048.1| DNA ligase [Lactococcus lactis subsp. cremoris MG1363] gi|300070060|gb|ADJ59460.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris NZ9000] Length = 686 Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 235/747 (31%), Positives = 369/747 (49%), Gaps = 102/747 (13%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++IE KEL+ + +Y YY +P + DSEYD L + P L R++ P Sbjct: 1 MNIESKIKELTDQLNQFAYE---YYTLDEPSVEDSEYDHLYHELVKLEQENPQLVRADSP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++ GG + K H SL +++ E+L + R+ +K+ + + E Sbjct: 58 T---HRTGGVILDGFVKFRHPYNLYSLGDVFSREELALWEERV-----RKEIVNPEYICE 109 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRG 189 KIDG +++ YE G V AA RGDG +GE+++ ++ I +P L + E I+ VRG Sbjct: 110 LKIDGLSLSLYYENGLLVTAATRGDGTTGENITENVKRIKDVP----LKLKEAIDIVVRG 165 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ + +F LN E G P+ANPRNAA+G LR+L+ + R L F++ + S Sbjct: 166 EAYLPRQNFAKLNAERELEGAAPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQ--EASP 223 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q E+L+ LGF VN + A I + E +R LPYDIDG+V KV+ Sbjct: 224 ATNDTQEEVLEYFEELGFQVNPERKFARNLDEIWEFIEEATRLRDELPYDIDGVVIKVNN 283 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + Q++LG ++PRW I++KF +QA T +L +D +GRTG++TP A + V + + Sbjct: 284 LAEQEELGFTVKAPRWAIAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTAVLLAQTTV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP----- 423 ATLHN DYI+ +DIR D+V++ +AG++IPKV +++ +R P Sbjct: 344 ARATLHNVDYIQE-----------KDIRNHDKVMIYKAGDIIPKVGKVLLEKRKPARHLR 392 Query: 424 ---------------------------DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 + P+ CP C S ++ + A Sbjct: 393 KTHRANKYVWTRFGRRSVEKGLVFSKREDNRVKIPTQCPECDSDLIHFEDE------VAL 446 Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516 RC L C AQ E+L HF SRDA NI GLG + F D + AD++ L Sbjct: 447 RCVNPL-CPAQIREKLIHFASRDAMNIVGLGPSVISQLF---DKKLVTDV-ADLYQLTVE 501 Query: 517 QQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 + K++ L VS +I + R S E+ +F LGIRHVG + A+ L + + + Sbjct: 502 DLLTLDKVKETLAQKIVS------AIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFAN 555 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS- 635 + +Q I+ +P +G +IA A+V +++ + LL E+ + Sbjct: 556 LRALSQASEEEISE----------IPSLGGVIATAVVSYFET----AGAKTLLDELENAG 601 Query: 636 -----IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 +G NV + K +V TG L ++R +A+E + LGA VS +S+KTD+++ Sbjct: 602 LNFAYLG--AVNVEGILSGKTVVLTGKLTTLKRTEAKEKLEALGANVSGSVSKKTDLVVA 659 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFL 717 G+ GSKL KAQ LG++I +E+ L L Sbjct: 660 GEEAGSKLTKAQDLGIEIWSEQDLLDL 686 >gi|318040766|ref|ZP_07972722.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0101] Length = 690 Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 222/722 (30%), Positives = 356/722 (49%), Gaps = 51/722 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P E+L+ AR + L Q ++ YY P + D YD L R + A P+L Sbjct: 6 PDESLAAPHARA--AELRQLLNRAAHAYYVLDAPEMEDPVYDRLYRELLDLETAHPELIA 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P ++GG V H I LSL+ +N +L + R+ + ++ ++ Sbjct: 64 ---PDSPTQRVGGAPAEGFQSVQHRIGLLSLDNAFNTGELEAWYARLLKVLDREPAAALP 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186 E KIDG + + YE G V AA RGDG GE+++A +R I ++P L L + PE +E Sbjct: 121 MVGELKIDGNALALSYEHGVLVRAATRGDGEQGEEITANVRTIGSVPLRLQLEHPPEWLE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG- 244 VRGE +I F A+N E + G +ANPRNA +G LR+L+P + R L+FF + L Sbjct: 181 VRGEAFIPDGTFTAINAERESRGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHL 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 Q+E LQ ++ GF VN + +++ + R L Y DG+V Sbjct: 241 PPGTQGPASQWESLQWLKAAGFKVNPNAELLPDLAAVEAFFERWDTGRRQLDYATDGVVV 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+++ +LQ G ++PRW I+ K+ ++A ++LL + Q+GRTG++TPVA EPV + Sbjct: 301 KLNDLALQDAAGFTQKAPRWAIALKYPAEEAPSKLLRLACQVGRTGVVTPVAEFEPVPLA 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ ATLHN D + L D+ GD ++V++AGE+IP+VV ++ R Sbjct: 361 GTSVSRATLHNADRLVEL-----------DLHAGDTIVVRKAGEIIPEVVRVLAELRPAG 409 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 AQ P CP C S +VR+ AA RC +C A L+H+VS+ A +++ Sbjct: 410 AQRLELPHTCPECGSELVREEGE------AATRCVNS-SCPAILRGALRHWVSKGALDVD 462 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG + ++ D I AD++ L S ++ G S NL ++ Sbjct: 463 GLGSKLIEQLV---DRGLVGSI-ADLYRLDGALLASLERM------GSKSADNLVAALAA 512 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + R ++ LGI HVG A++LA + S A A + + ++ + + Sbjct: 513 SKAQPWNRQLYGLGIHHVGEVNAKTLASAFPSAAELA-----TAATDTPELITAVYG--I 565 Query: 605 GDIIAQAIVEFYQNPRN---ICAVEAL-----LKEVSPSIGRHEKNVSSEIENKKLVFTG 656 G IAQ++ +++ N + +E L + + S+++ + V TG Sbjct: 566 GGEIAQSLQQWFATAANQELLSQLERLGFSLATSDEELAAAAERSAASAQLNGQTFVLTG 625 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL + R +A+ + G VS +S+KT ++ GD GSKL KA+ LGV +++E Sbjct: 626 TLPSMSRSEAKALIEAAGGKVSGSVSKKTSYVVAGDEAGSKLSKAESLGVAVLDEAGLQA 685 Query: 717 LL 718 LL Sbjct: 686 LL 687 >gi|317177554|dbj|BAJ55343.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F16] Length = 656 Score = 333 bits (853), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 237/701 (33%), Positives = 365/701 (52%), Gaps = 68/701 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P+ S N P K+G S Sbjct: 18 LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGAITPNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K +H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNSHLMRMWSLDDVFNQNELQAWLQRILKAYP-----STSFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAITYNGE--IEIRGEVIISKKDFDALNQERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHALIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEP+ I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPIEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G +A ++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMAHSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + + ++ SS NK +V TGTL K ++ AQ + LGA VS+ + Sbjct: 557 IRSLFDLLNPKNSDMAKEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKVSSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++++ Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656 >gi|86153540|ref|ZP_01071744.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843266|gb|EAQ60477.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni HB93-13] Length = 647 Score = 333 bits (853), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 221/689 (32%), Positives = 362/689 (52%), Gaps = 64/689 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYDAL R F + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDALIREL----SVFEEQNKDEISKDSPTQKIAPIIQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L ++W++ED+ F R W K+ F +EPK DG + + YE GK A Sbjct: 74 ----LRRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLASGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++ E IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T IT R L F+ G+G+ + F K E++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 VR ++ Y+E+ ++R P +DG+V +VD+ +L ++LG + P++M + KF Sbjct: 244 VRLCTNLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+++ D V V R+G+VIPK+ + R S P CP CQS ++ + G Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ +C + C + + + HFVS+ NI+GLG+ ++ +K + I Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ + E + GF + + NL ++I + R L RFI +LGI H+G A+ L+ Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +F +E + + + + G+ +A ++ EF + N ++ K Sbjct: 514 ------LSFGKE------WHKQSFEAYANLEGFGEQMALSLCEFTR--VNHTRIDEFYKL 559 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ I + E I K V TGTL + R + + + +LG VS +S+KTD ++ G Sbjct: 560 LNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSGSVSKKTDYVLFG 618 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GSKL KA++L VK ++E F L+++ Sbjct: 619 EEAGSKLSKAKELEVKCIDESAFNELVKE 647 >gi|283955998|ref|ZP_06373487.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 1336] gi|283792474|gb|EFC31254.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 1336] Length = 647 Score = 333 bits (853), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 225/689 (32%), Positives = 364/689 (52%), Gaps = 64/689 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYDAL R F + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDALIREL----RVFEEQNKDEISKDSPTQKIAPIIQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L+++W++ED+ F R W K+ F +EPK DG + + YE GK V A Sbjct: 74 ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++ E IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T IT R L F+ G+G+ + F K E++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 VR ++ Y+E+ ++R P +DG+V +VD+ L ++LG + P++M + KF Sbjct: 244 VRLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLELCEELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+++ D V V R+G+VIPK+ + R P CP CQS ++ + G Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEILRPKLCPTCQSELLDE-----GT 407 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ +C + C + + + HFVS+ NI+GLG+ ++ +K + I Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ + E + GF + + NL ++I + R L RFI +LGI H+G A+ L+ Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIDHIGEVAAKKLS 513 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 LS+ N + A+ N + G+ +A ++ EF + N ++ K Sbjct: 514 ---LSF-NKEWHKQSFEAYAN--------LEGFGEQMALSLCEFTR--VNHTRIDEFYKL 559 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ I + E S I K V TGTL + R + + + +LG VS +S+KTD ++ G Sbjct: 560 LNLKIEKLEIKSDSVIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSGSVSKKTDYVLFG 618 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GSKL KA++L VK ++E F L+++ Sbjct: 619 EEAGSKLSKAKELEVKCIDESAFNELVKE 647 >gi|282861257|ref|ZP_06270322.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE] gi|282563915|gb|EFB69452.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE] Length = 732 Score = 333 bits (853), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 222/753 (29%), Positives = 369/753 (49%), Gaps = 75/753 (9%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 + R+L + A +AR+ + L ++I H YY +P++ D+E+D L R +A+ Sbjct: 6 QARELTGVSA----EARERHALLSEQIEEHRFRYYVKDQPVVSDAEFDRLMRELEAVEDE 61 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 P L P+ P K+ G V H LSL+ ++ E+L + R+ + + Sbjct: 62 NPQL---RTPDSPTQKVAGPYTTEFTSVEHRERMLSLDNAFDDEELAAWAERVAKDVGRP 118 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLN 180 F E K+DG + + YE G+ AA RGDG +GED++ IR I IP R+ Sbjct: 119 ---GYHFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNIRTIAEIPHRLTGDR 175 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF 239 +P ++E+RGEVY F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ Sbjct: 176 VPALVEIRGEVYFPMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMV 235 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 VHG+G + + +R G P + ++ G+ + R ++ ++I Sbjct: 236 VHGIGAREGLDIDRLSQAYDLLRDWGLPTARHNKVVDSLDGVREFVRYFGENRHSVEHEI 295 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V K+DE LQ +LG +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++E Sbjct: 296 DGVVVKLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVE 355 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 V + G+ + ATLHN++ +K + + +GD V++++AG+VIP+++ +V+ Sbjct: 356 AVEVAGSEVEFATLHNQNVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVD 404 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R + F P+ CP C + L P K G + RC +C AQ ER+ + R Sbjct: 405 LRDGSEREFVMPAECPECGT----PLRPMKEGDV--DLRCPNARSCPAQLRERVAYLAGR 458 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTL--------------------QRRQ 517 +I+ G + +P+ +R D+F+L +R Sbjct: 459 KCLDIDHFGYVAAAALTQPLEPSEPPLRDEGDLFSLTIDQLLPIRAYVLDPDSGLPRRDP 518 Query: 518 QTSTTKIENIL----GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 +T KI + G + L D I + L R + L IRHVG A LA+ Sbjct: 519 KTGEEKIATVFANQQGEPKKNALALLDGIAAAKQAPLARILTGLSIRHVGPVAAVELARQ 578 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + +A + VG IIA ++ +++ + +L++ Sbjct: 579 FRSVDRIDEASEAELAAADG----------VGSIIAASVKQWFAEDWH----REILRKWR 624 Query: 634 PSIGRHEKNVSSE------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 + R E + E +E +V TGTL R A++ + LGA V+ +S+KT Sbjct: 625 EAGVRMEDEGAGEDEGPRPLEGLTVVVTGTLASHTRDGAKDALQSLGAKVTGSVSKKTSF 684 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++VG+NPGSK +KA QL V +++E F LL + Sbjct: 685 VVVGENPGSKYDKAMQLKVPVLDEAGFAVLLDE 717 >gi|227503896|ref|ZP_03933945.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940] gi|227199519|gb|EEI79567.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940] Length = 680 Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 217/713 (30%), Positives = 357/713 (50%), Gaps = 61/713 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +++ S L QE+ H + YY +P I D+++D L +R + P+LA P+ P + Sbjct: 14 QRKWSELAQEVRKHRELYYN-GEPSIPDADFDELFQRLLKLEAEHPELAV---PDSPTQQ 69 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + H SL+ ++N +++ ++ R + + E KIDG Sbjct: 70 VGAAPE-GAADIEHLERLYSLDNVFNESEMQDWLDRT---------PAQTYLTELKIDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193 I + Y GK AA RGDG GED++A + I IP LS +P ++EVRGEVY+ Sbjct: 120 SIDLVYRDGKLTTAATRGDGRVGEDITANAKVITDIPHELSGTDEYPVPALVEVRGEVYM 179 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 ++F +N G+ +ANPRNAA+G LR +P ++ R L+ HG+G Sbjct: 180 RPDEFAEINAARREDGKPTFANPRNAAAGGLRMKDPNEVKKRRLHMVCHGIGARDGFQPS 239 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q++ Q + GFPV+ +Q + + R +++DGLV KVD+ + Q Sbjct: 240 SQHDAYQALEAWGFPVSPYTKQVKSAAAVQKEIKHWAEHRHDAYFEMDGLVVKVDDLASQ 299 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG +R+PRW I++K+ ++ +T+LLDI++ +GRTG +TP A +EPV + G+ ++ AT Sbjct: 300 RALGATSRAPRWAIAYKYPPEEVTTKLLDIEVGVGRTGRITPFAVMEPVFVSGSTVSKAT 359 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN+ +K + + +GD +++++AGE+IP+V+ ++ R + FP Sbjct: 360 LHNQFEVK-----------NKGVMIGDTIIIRKAGEIIPEVLGPVLELRDDSVYEWVFPE 408 Query: 433 FCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C ++ L P K G RC +C AQ RL++ SR +IE LG++ Sbjct: 409 NCPSCGTK----LAPQKDGD--QDWRCPNTRSCPAQLSARLEYLASRKGMDIEALGEKAA 462 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 +S + AD+F L + ++ G + L ++ R Sbjct: 463 VDLIES----GVLVDEADLFDLDEEKLLKSSAYTTKAGKLNAQGKKLLKNLESARQTDFW 518 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + SL IRHVG AR+LA Y S + + +A + VG IIA + Sbjct: 519 RVLVSLSIRHVGPIAARALATRYRSMEALRAASESELADTDG----------VGGIIAAS 568 Query: 612 IVEFYQNP--RNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +++ RNI A + E + + +HE+ +E +V TGTL+ R A Sbjct: 569 FKAWFEEDWHRNIVEKWAAAGVTMEDT-ATEQHEQT----LEGLTIVVTGTLENFSRDSA 623 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + G S +S+KTD ++VG+N GSK KA++LG+ I++E F LL+ Sbjct: 624 KEAIITRGGKASGSVSKKTDYVVVGENAGSKETKARELGLTILDEAGFQRLLE 676 >gi|317062114|ref|ZP_07926599.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185] gi|313687790|gb|EFS24625.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185] Length = 665 Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 233/701 (33%), Positives = 369/701 (52%), Gaps = 54/701 (7%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL---SLF 87 ++ YY ++ +I D EYD L + +P+ P I G NL Sbjct: 8 YNQYYYTNNESLISDVEYDMLMNELKELEEKYPEYKSEASPT----VIVGASNLRENKFQ 63 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 KVTH P LSL +N E++ FI RI R +++D I + LE K+DG I+I+YEKGK Sbjct: 64 KVTHKKPMLSLSNTYNEEEIGDFIDRIKRLLPERED--IKYALELKLDGLSISIQYEKGK 121 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V RGDG GEDV+ I I TIP +L P +E+RGE+ + + F +LN+ + Sbjct: 122 LVRGVTRGDGAIGEDVTENIMEIETIPH--TLKEPLDMEIRGEIVLPISRFESLNERRME 179 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266 G + +ANPRNAASG LR+++ + I R L+ + + + + E ++ + LG Sbjct: 180 AGEEVFANPRNAASGTLRQIDASIIKERGLDCYFYFIVDAKNYGIQTHSESIKYLESLGI 239 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 +T + + + + L Y+ DG+V KVD L +LG +SPRW I Sbjct: 240 KTTGVCEVLDTASALKKRIDYWEQEKEKLDYETDGMVIKVDNLDLWDELGNTTKSPRWAI 299 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++KF KQ +T LL I Q+GRTG +TPVA LE V + G+ + A+LHN I+ Sbjct: 300 AYKFPAKQVTTTLLGITWQVGRTGKVTPVAELEEVALSGSKVKRASLHNFHEIE------ 353 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 +DIR+GD+V +++A E+IP+VV I R + + P CP+C S V R+ Sbjct: 354 -----RKDIRIGDKVFIEKAAEIIPQVVKSIKEFRDGSEKMITEPDKCPVCGSPVARE-- 406 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 G++ +CT + C + R+++FVSRDA NI G G + ++ K + +F I+ Sbjct: 407 --EGQVDI--KCTNPV-CPGKVKGRIEYFVSRDAMNIGGFGSKMVE---KMLELSF-IKN 457 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 DI+ L+ ++ +ENI G SV NL DSI + + I++LGI +G Sbjct: 458 VGDIYDLKDHKED----LENIEKMGKRSVENLLDSIEASKKRDYSKVIYALGIPFIGKYS 513 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 + LA+ ++ I+N++ ++ LI + +GD A+A+ +F ++ NI + Sbjct: 514 GKLLAEA-------SRNIDNLMKMEIEE---LIEIDGIGDKGAKAVYDFLRDEENIELIN 563 Query: 627 ALLKEVSPSIGRHEKNVSSEIE----NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 +LK EK + E K +FTGTL+ +R + +E + +LG + +S Sbjct: 564 -ILKGHGLQFAMEEKEEEDQSEKIFSGKTFLFTGTLKNFKREEIKEEIEKLGGKNLSAVS 622 Query: 683 RKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQYN 722 + D +I+G+ GSKL+KAQ+LG VKI+ EE+F+ + + N Sbjct: 623 KNLDYLIIGEKAGSKLKKAQELGTVKILTEEEFVEICKNNN 663 >gi|320008426|gb|ADW03276.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331] Length = 731 Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 222/747 (29%), Positives = 364/747 (48%), Gaps = 75/747 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+ + L ++I H YY +P++ D+E+D R +AI H P+L P+ P Sbjct: 16 EVRERHALLAEQIEEHRFRYYVKDQPVVDDAEFDRQMRALEAIEHEHPEL---RTPDSPT 72 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K+ G V H LSL+ ++ +L + R+ + F E K+D Sbjct: 73 QKVAGPYTTEFTSVEHRERLLSLDNAFDDGELAAWAERVAK---DVGGGGYHFLCELKVD 129 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYIS 194 G + + YE G+ AA RGDG +GED++ +R I IP R+ +IP ++E+RGEV+ Sbjct: 130 GLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPLRLKGDDIPALVEIRGEVFFP 189 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 F LN ++ G KP+ANPRNAA+G LR+ +P TR L+ VHG+G Sbjct: 190 MEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREGFGIDR 249 Query: 254 QYEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + +R G P N V + ++++ E R ++ ++IDG+V K+DE Sbjct: 250 LSQAYDLLREWGLPTARHNKVVESLDEVREFIAWFGEN---RQSVEHEIDGVVVKLDEIP 306 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +R+PRW I+ K+A ++ +T+L++I + +GRTG +TP A++EPV + G+ + Sbjct: 307 LQGRLGSTSRAPRWAIAWKYAPQEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVAGSEVEF 366 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN++ +K + + +GD V++++AG+VIP+++ +V+ R F Sbjct: 367 ATLHNQNVVK-----------AKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEHAFVM 415 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG--- 487 PS CP C + +R + L RC +C AQ ER+ + R +I+ G Sbjct: 416 PSECPECGT-PLRPMKEADIDL----RCPNARSCPAQLRERVAYLAGRKCLDIDHFGYVA 470 Query: 488 ---------------KQQLDFFFKSEDPAFSIR---IPADIFTLQRRQQTSTTKIENIL- 528 + D F + + IR + D +R +T KI + Sbjct: 471 AAALTRPLEPEEPPLLDEGDLFGLTVEQLLPIRAYFLDPDSGLPKRDPKTGEEKIATVFA 530 Query: 529 ---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 G + + + I R L R + L IRHVG A LA+ + S + + Sbjct: 531 NQQGEPKKNALGMLEGIAAARQAPLARILTGLSIRHVGPVAAVELARQFRSIERIDEASE 590 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 +A + VG IIA ++ +++ + +L++ + R E + Sbjct: 591 EELAAADG----------VGPIIAASVKQWFAEDWH----REILRKWREAGVRMEDEGAG 636 Query: 646 E------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 E +E +V TGTL R A++ + LGA V+ +S+KT ++VGDNPGSK + Sbjct: 637 EDEGPRPLEGLTVVVTGTLAAHTRDGAKDALQSLGAKVTGSVSKKTSFVVVGDNPGSKYD 696 Query: 700 KAQQLGVKIMNEEQFLFLLQQYNTTLR 726 KA QL V +++EE F LL+Q R Sbjct: 697 KAMQLKVPVLDEEGFAVLLEQGPDAAR 723 >gi|213964541|ref|ZP_03392741.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46] gi|213952734|gb|EEB64116.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46] Length = 703 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 222/717 (30%), Positives = 372/717 (51%), Gaps = 65/717 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R++ L I + YY ++P+I D+EYD + R+ + +PDL P+ P + Sbjct: 33 REKWQELATRIRDNAALYYT-AQPVISDAEYDEMFRQLQQLEEQWPDLVV---PDSPTQQ 88 Query: 78 IGGEMNL----SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 +G ++ +F+ P LE++++++++ F + R W + S + T E K Sbjct: 89 VGAQVEAPADGEVFE-----PVEHLERLYSLDNV--FDEQELRGWLARTPASTYLT-ELK 140 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVY 192 IDG I + YEKG+ V AA RGDG GE+V+A R I IP +S N+P+++EVRGEV+ Sbjct: 141 IDGLSIDLVYEKGRLVRAATRGDGRVGENVTANARTIEDIPHEISGENVPDVLEVRGEVF 200 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 IS +F +N + + G+KP+ANPRNAA+G LR+ + ++ R L+ HG+G Sbjct: 201 ISLEEFERINSDRVDAGQKPFANPRNAAAGSLRQKDVAEVAKRRLSMICHGIGHIEGWRP 260 Query: 252 KGQYEMLQKMRCLGF---PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + Q+E + + GF P N V A+ + Y+ E R +++DGLV KVD Sbjct: 261 QSQHEAYRALGEWGFHVSPYTNQVHSADDVVKQMQYWGEH---RHDAIHEMDGLVVKVDS 317 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 S Q+ LG +R+PRW I++K+ ++ +T LLDI + IGRTG TP A ++PV + G+ + Sbjct: 318 LSEQRALGATSRAPRWAIAYKYPPEEVTTDLLDIRVSIGRTGRATPYAVMKPVFVAGSTV 377 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN +V R G + +GDRV +++AG+VIP+V+ + + R + + Sbjct: 378 EMATLHN---------PSEVHRKG--VLIGDRVTIRKAGDVIPEVLGPVADLRDGSERKY 426 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 +P+ CP C +R+ + A RC C Q R++ SR F+IE LG+ Sbjct: 427 IYPTLCPECGTRLAPAKDSD-----ADWRCPNTRYCPGQLRRRIEFLASRSGFDIENLGE 481 Query: 489 Q-QLDFFFKS--EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 + D + +D + + + T++ K N G L +I+ Sbjct: 482 RGAADLIHRGVLDDESRLFDLTEEDLLGTEVYTTASRKSLNANG------KKLLANIDAA 535 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ L R + SL IRHVG +AR+LA+ + S + I+ + +G Sbjct: 536 KDKELWRVLVSLSIRHVGPTVARTLAQKFGSMEALRAASREEISA----------IDGIG 585 Query: 606 DIIAQAIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +II ++ ++++ + V EA ++ + V +E +V TG+L+ Sbjct: 586 EIIGDSVADWFEVDWHREVVERWEAAGVRMADEVTDRPDQV---LEGLTVVVTGSLEDFT 642 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A+E + G + +S+KTD ++VG+N GSK KA++LG+ I++E+ F LL+ Sbjct: 643 RDSAKEAIISRGGKAAGSVSKKTDYVVVGENAGSKATKAEELGLPILDEDGFKRLLE 699 >gi|237753058|ref|ZP_04583538.1| NAD-dependent DNA ligase LigA [Helicobacter winghamensis ATCC BAA-430] gi|229375325|gb|EEO25416.1| NAD-dependent DNA ligase LigA [Helicobacter winghamensis ATCC BAA-430] Length = 666 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 230/703 (32%), Positives = 358/703 (50%), Gaps = 75/703 (10%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY PI D EYD L + A P + P ++G ++ K TH Sbjct: 20 YYVLDDPIASDEEYDLLYHKVLAYEAQNPQFIAQDSPT---QRVGDKVLEGFNKHTHLKR 76 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SLE ++N + +++I R R D + F++ PK DG + + YE G AA R Sbjct: 77 MWSLEDVFNETETQEWILRAKRGLGLLSDAPLIFSVSPKFDGASLNLLYEDGILKCAATR 136 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GD GE+V+ R IP+IP LS+ IE+RGE I K+DF ALN E G +A Sbjct: 137 GDAFIGENVTQNARTIPSIP--LSIAYKGRIEIRGECVIGKDDFEALNLERQNKGETLFA 194 Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEI----FAKGQ--------YEMLQKM 261 NPRN A+G LR+L+ +R L F G+G+ FA + + +++ + Sbjct: 195 NPRNCAAGSLRQLDSKITASRKLQFIPWGVGECDTKDFMDFASKEKTRNPNSFFALMEGI 254 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 LGF + I + Y + R +DG+V VD F LQ++LG ++ Sbjct: 255 YALGFQKPPFTELCTNYDSIHTAYQTLLKAREDYAIMLDGMVLCVDAFDLQEKLGFTIKA 314 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PR+ ++KF + ++L I +Q+GRTG++TPVA LEPV + GA I+ ATLHN D I Sbjct: 315 PRFACAYKFPALEKRAKILSITLQVGRTGVITPVAELEPVLLEGAKISRATLHNFDEIH- 373 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DI++ D V++ R+G+VIPK++ + R P + P+ CPIC S + Sbjct: 374 ----------KKDIQINDFVVLIRSGDVIPKIIKSLPKLRDGTQYPCATPTQCPICNSTL 423 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + + KL+ L C A+ + HF S+ A NI+GLG++ ++ F+ + Sbjct: 424 LIE-----EKLIKCQN----LNCPARVKNSITHFASKKALNIDGLGEKIVELLFECK--- 471 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I+ DIFTL+ +E + GF + + NL ++I K + + L RFI +LGI H Sbjct: 472 -KIQSIEDIFTLK------ANDLEGLEGFKEKKINNLIEAILKVKGVELWRFINALGIEH 524 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G ++ LA Y + + + + IA + G +A+++VEF Sbjct: 525 IGEGASKKLANAY-GLEFYKKSYADFIALDG-----------FGGEMAESLVEF------ 566 Query: 622 ICAVEA-----LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 C V LL+ ++P+ + + + S+I K V TGTL K +R + QE + LGA Sbjct: 567 -CTVNQTRLLRLLEYIAPTC--NTQVLESKISGKTFVITGTLPK-KREEYQELLESLGAK 622 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 VS +S+KTD ++ G++ GSKL KA++LGVKI+N E+ LL+ Sbjct: 623 VSGSVSKKTDFLLCGEDAGSKLTKAKELGVKIINVEELQALLE 665 >gi|256832938|ref|YP_003161665.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603] gi|256686469|gb|ACV09362.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603] Length = 798 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 230/770 (29%), Positives = 383/770 (49%), Gaps = 106/770 (13%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S+++ + L+ L Q + YY + + D++YDAL A+ P Sbjct: 51 VSLQEQWERLARLIQRYQFE---YYIQGESSVPDADYDALLAELVAVEEQL-----GGAP 102 Query: 72 NG-PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 G P ++GG + +V H P LSL+ +++E+L+ + R++ + ++ + Sbjct: 103 QGSPTQRVGGTFSTEFEEVDHRQPMLSLDNAFSLEELQAWADRVH---GELSGGAVSYLC 159 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEV 187 E KIDG +++ YE+G+ V A RGDG +GEDV+ ++ I +IP+ L + P+++E+ Sbjct: 160 EVKIDGLAVSLTYERGELVRALTRGDGQTGEDVTLNVQTIRSIPQRLGGDPAFHPQVVEI 219 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK- 245 RGEV++ DF LND G K +ANPRNAA+G LR+ +P R L+ + HG+G Sbjct: 220 RGEVFMKVADFADLNDSQARQGGKTFANPRNAAAGSLRQKDPRVTAQRRLSMYAHGIGAL 279 Query: 246 ----TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYD 298 S + Q ++ + G PV++ + + + YY E R ++ ++ Sbjct: 280 EWDGQSPVDLARQSDVYALYQQWGIPVSSHNSVEHDLDAVTRKIEYYREN---RHSIEHE 336 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 +DG V KVDE + QKQLG +R+PRW I+ K+ ++ +TRLLDI + +GRTG +TP + Sbjct: 337 LDGFVIKVDEVAAQKQLGSTSRAPRWAIAFKYPPEEVTTRLLDIQVNVGRTGRVTPFGMM 396 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G+ ++ ATLHN ++ +D+R GD V+V++AG+VIP+++ + Sbjct: 397 EPVLVAGSTVSMATLHNFHEVR-----------RKDVRPGDTVIVRKAGDVIPEILGAVE 445 Query: 419 NERHPDAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + R PD P + P+ CP C + +R+ L RC +C +Q ER+ S Sbjct: 446 SLR-PDGLPQWEPPTHCPSCGTE-IREAKEGDKDL----RCPNAQSCPSQLRERVFALAS 499 Query: 478 RDAFNIEGLGKQ-------------------QLD--------------FFFKSEDPAFSI 504 R AF+IE LG + QLD F E+ + + Sbjct: 500 RGAFDIEALGWESAVALCDPESSRPVGPDAPQLDGPPLTPVLTSEAHIFDLADENSSLT- 558 Query: 505 RIPADIFTLQRRQQTSTTKIENILGF-----------GDVSVTNLYDSINKRRNISLERF 553 R D+ + R+ S T+ E + F + L++ + K ++ L R Sbjct: 559 RSLKDVVVWRERKLKSGTRWELVPYFYTRATASKSSVPTATTVKLFEEVQKAKSQPLWRV 618 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 + +L IRHVG AR+LA + S A ++ + A + VG IA+++ Sbjct: 619 LVALSIRHVGPTAARALATEFGSMDRIRAASVSELAAVDG-----------VGSTIAESV 667 Query: 613 VEFYQ----NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 VE+++ N V A K +++V +E +V TG L+ R +E Sbjct: 668 VEWFREVDGNQWRPAIVAAWAKAGVSMEDIPDESVQRTLEGITVVVTGGLENFTRDGVKE 727 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G S +S+KTD ++VG N GSK KA++LG++I+NEE+F LL Sbjct: 728 AIVARGGKASGSVSKKTDFVVVGANAGSKETKARELGLRILNEEEFTRLL 777 >gi|57238218|ref|YP_178701.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni RM1221] gi|81353856|sp|Q5HVI4|DNLJ_CAMJR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|57167022|gb|AAW35801.1| DNA ligase, NAD-dependent [Campylobacter jejuni RM1221] gi|315058000|gb|ADT72329.1| DNA ligase [Campylobacter jejuni subsp. jejuni S3] Length = 647 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 223/695 (32%), Positives = 360/695 (51%), Gaps = 76/695 (10%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYDAL R F + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDALIREL----RVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L+++W++ED+ F R W K+ F +EPK DG + + YE GK V A Sbjct: 74 ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++ E IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T IT R L F+ G+G+ + F K E++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 VR ++ Y+E+ +R P +DG+V +VD+ +L ++LG + P++M + KF Sbjct: 244 VRLCANLDEVLKAYDELLVLREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ +++Q+GR+G +TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGVNLQVGRSGAITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+++ D V V R+G+VIPK+ + R S P CP CQS ++ + G Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ +C + C + + + HFVS+ NI+GLG+ ++ +K + I Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ E + GF + + NL ++I + R L RFI +LGI H+G A+ L+ Sbjct: 454 TLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513 Query: 572 ------KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 Y S++ +A + G+ +A ++ EF + N + Sbjct: 514 LSFGKEWYKQSFEAYAN------------------LEGFGEQMALSLCEFTR--VNHTRI 553 Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 + K ++ I + E I K V TGTL + R + + + +LG VS +S+KT Sbjct: 554 DEFYKLLNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSGSVSKKT 612 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 D ++ G+ GSKL KA++L VK ++E F L+++ Sbjct: 613 DYVLFGEEAGSKLSKAKELEVKCIDESAFNELVKE 647 >gi|86151833|ref|ZP_01070047.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 260.94] gi|85841462|gb|EAQ58710.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 260.94] Length = 647 Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 218/689 (31%), Positives = 363/689 (52%), Gaps = 64/689 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYD L R F + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDVLIREL----RVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L+++W++ED+ F R W K+ F +EPK DG + + YE GK V A Sbjct: 74 ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++ E IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T IT R L F+ G+G+ + F K +++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSDVMQFIRELGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 ++ ++ Y+E+ ++R P +DG+V +VD+ +L ++LG + P++M + KF Sbjct: 244 IKLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+++ D V V R+G+VIPK+ + R S P CP CQS ++ + G Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ +C + C + + + HFVS+ NI+GLG+ ++ +K + I Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ + E + GF + + NL ++I + R L RFI +LGI H+G A+ L+ Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +F +E + + + + G+ +A ++ EF + R ++ K Sbjct: 514 ------LSFGKE------WHKQSFEAYANLEGFGEQMALSLCEFTRVNRT--RIDEFYKL 559 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ I + E I K V TGTL + R + + + +LG VS +S+KTD ++ G Sbjct: 560 LNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSGSVSKKTDYVLFG 618 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GSKL KA++L VK ++E F L+++ Sbjct: 619 EEAGSKLSKAKELEVKCIDESAFNELVKE 647 >gi|153956079|ref|YP_001396844.1| LigA1 [Clostridium kluyveri DSM 555] gi|219856414|ref|YP_002473536.1| hypothetical protein CKR_3071 [Clostridium kluyveri NBRC 12016] gi|190359246|sp|A5N2X7|DNLJ_CLOK5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781297|sp|B9DWM9|DNLJ_CLOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146348937|gb|EDK35473.1| LigA1 [Clostridium kluyveri DSM 555] gi|219570138|dbj|BAH08122.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 663 Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 212/699 (30%), Positives = 359/699 (51%), Gaps = 46/699 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L + I YH+D YY P I D EYD L + ++ P+ + P K Sbjct: 4 KKRIDELRKIIEYHNDKYYNQDDPEITDYEYDKLYVELRNLENSHPEYKIQ---SSPTQK 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG + L KV H IP +SL+ +++ E++ F+ +I + F +E KIDG Sbjct: 61 VGGTVKRELRKVKHDIPVVSLQDVFSKEEVYSFVEKI-----TSEVTYPKFVVEKKIDGL 115 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + +RY G+ A RGDG GE V I + +IP+ + + +E+RGE+Y++ + Sbjct: 116 TVVLRYYNGELKEAITRGDGSIGESVFENILQVKSIPKHIPSKL-NYLEIRGEIYMTNEN 174 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F+ +N++ +G K + NPRN A+G +R+L+ + + R L+ F+ L + + E Sbjct: 175 FIKVNEKQEEIGGKIFKNPRNLAAGTIRQLDTSIVKDRNLDIFIFNLEISEGKKFETHSE 234 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ + GF V+ + T + + +++ R L Y IDG V KVD + + LG Sbjct: 235 TLEWLSNQGFDVSPNFKICETADEVWNAILDIEESRWDLGYSIDGAVVKVDNLNDRISLG 294 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++ P+W ++ K+ +Q T + DI +Q+ RTG L P+A L PV + I+ ATLHN+ Sbjct: 295 MTSKVPKWTVAFKYPPEQKETVIEDIIVQVSRTGRLNPLALLRPVILANTTISKATLHNQ 354 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD V++++AG++IP+++ I +R A+ + P CP+ Sbjct: 355 DFI-----------DSKDIRIGDTVIIQKAGDIIPEIIRSIPEKRPDWAKKYIIPDVCPV 403 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S+ +R+ + RC+ C AQ ++ +FVS+DA NI G G+ ++ K Sbjct: 404 CNSKTIREPDG------VDTRCSNP-DCEAQSFRKIGYFVSKDAMNIVGFGQNTVEALMK 456 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ +DI+ L+ + K I+G + SV NL ++I ++ ++R I Sbjct: 457 DG----YIKKISDIYILKNYKDALIEK--GIIG-KEKSVNNLLNAIELSKDNDIDRLITG 509 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR+VG + A+ LA + S A + LI + G I+EF+ Sbjct: 510 LGIRNVGKQSAKILAGNFKSMDELAGAA----------YEQLIELEDFGPTTVPDILEFF 559 Query: 617 QNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + I ++ L + +I + +K + + K V TGTL ++R +A E + G Sbjct: 560 NSNAYIELIKKLKEAGVNTISKTLQKKIDNRFLGKTFVITGTLPTMKRDEAAEIIQSFGG 619 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 VS +S++T ++ G+ GSKL KAQQLG+ I+ EE Sbjct: 620 KVSGSVSKRTSFVLAGEEAGSKLTKAQQLGISIITEEDL 658 >gi|217033559|ref|ZP_03438988.1| hypothetical protein HP9810_905g78 [Helicobacter pylori 98-10] gi|216944084|gb|EEC23515.1| hypothetical protein HP9810_905g78 [Helicobacter pylori 98-10] Length = 656 Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 235/701 (33%), Positives = 368/701 (52%), Gaps = 68/701 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P+ ++ N P K+G + S Sbjct: 18 LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNGIQA---NSPTQKVGAITSNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K +H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNSHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + + ++ SS +K +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDMAKEKQENSSAFSHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++++ Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656 >gi|15645240|ref|NP_207410.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 26695] gi|3182983|sp|O25336|DNLJ_HELPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2313737|gb|AAD07680.1| DNA ligase (lig) [Helicobacter pylori 26695] Length = 656 Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 235/699 (33%), Positives = 363/699 (51%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY +PI+ D+ YD L + A P+ ++ N P K+G S Sbjct: 18 LSHH---YYNLDEPIVSDAIYDELYQELKAYEEKNPNGIQA---NSPTQKVGATTTNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNQERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+I ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMINRATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLSDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + ++ SS NK +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFELLNPKNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KTD +I G+NPGSKL AQ+ GV ++NEE+ L L++ Sbjct: 616 SAKTDFLIAGENPGSKLALAQKHGVSVLNEEELLKRLKE 654 >gi|121612203|ref|YP_001000287.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni 81-176] gi|167005239|ref|ZP_02270997.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni 81-176] gi|166215572|sp|A1VYU6|DNLJ_CAMJJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|87250057|gb|EAQ73015.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 81-176] Length = 647 Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 218/689 (31%), Positives = 365/689 (52%), Gaps = 64/689 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYD L R F + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDVLIREL----RVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L+++W++ED+ F R W K+ F +EPK DG + + YE GK V A Sbjct: 74 ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++ E IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T IT R L F+ G+G+ + F K E++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 ++ ++ Y+E+ ++R P +DG+V ++D+ +L ++LG + P++M + KF Sbjct: 244 IKLCANLDEVLKAYDELLALREKKPMMMDGMVVRIDDLALCEELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+++ D V V R+G+VIPK+ + + R S P CP CQS ++ + G Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKDRREGLEMEISRPKLCPTCQSELLDE-----GT 407 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ +C + C + + + HFVS+ NI+GLG+ ++ +K + I Sbjct: 408 LI---KCQ-NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ + E + GF + + NL ++I + R L RFI +LGI H+G A+ L+ Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +F +E + + + + G+ +A ++ EF + N ++ K Sbjct: 514 ------LSFGKE------WHKQSFEAYANLEGFGEQMALSLCEFTR--VNHVRIDEFYKL 559 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ I + E I K V TGTL + R + + + +LG VS+ +S+KTD ++ G Sbjct: 560 LNLKIEKLEIKSDGVIFGKTFVITGTLSR-PRDEFKALIEKLGGKVSSSVSKKTDYVLFG 618 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GSKL KA++L VK ++E F L+++ Sbjct: 619 EEAGSKLIKAKELEVKCIDESAFNELVKE 647 >gi|238926785|ref|ZP_04658545.1| DNA ligase (NAD(+)) [Selenomonas flueggei ATCC 43531] gi|238885317|gb|EEQ48955.1| DNA ligase (NAD(+)) [Selenomonas flueggei ATCC 43531] Length = 677 Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 224/712 (31%), Positives = 363/712 (50%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I++ + ELS L ++I + YY ++ I D ++D L R + A+P+L N Sbjct: 4 IDEVKTELSELRRKIRKYSKQYYDDNESEISDYDFDMLMMRLKKLEAAYPELITK---NS 60 Query: 74 PLNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +GG + V H +P LSL+ +++ E++R F+ I + + F +E Sbjct: 61 PTRTVGGSAQREVGVLVPHDVPMLSLQDVFSEEEIRAFVDNILAHFPAAE-----FIVEE 115 Query: 133 KIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + +RYE G A RGDG GEDV+A R I + + L +P EVRGEV Sbjct: 116 KIDGLSLALRYENGVLARAITRGDGIVQGEDVTANARMIDDVVQELHDALP-YFEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ + F +N+ +G KP+ANPRN A+G LR+L+ + IT R L+ FV L ++ Sbjct: 175 YMKRAAFAEVNERQELLGLKPFANPRNCAAGTLRQLD-SRITKERRLSMFVFNLQRSDGR 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E M+ G R + E+ R +LPYDIDG V KV+ F Sbjct: 234 MFSSHTEAYAFMQAQGIKTIANYRVCRMAEEVWDAIEEIGVRRGSLPYDIDGAVVKVNSF 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +++++LG A++PRW I++K+ ++ T L DI++ +GRTG +TP A +PV + G + Sbjct: 294 AMREELGVTAKAPRWAIAYKYPPEEKETVLRDIELSVGRTGRITPTAVFDPVGLCGTRVE 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+DYI L DIR+GD +LV ++GE+IP+V ++ +R +++P+ Sbjct: 354 RATLHNQDYIDSL-----------DIRIGDTILVYKSGEIIPRVKAVLKEKRPQNSRPYV 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C + VR+ + A RC + C AQ L +FVSR A +I+GLG Sbjct: 403 IPDVCPVCGAHAVREAD------TADMRCQNPV-CPAQIENHLLNFVSRSAMDIKGLGAA 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + +E I ADIF+L ++ ++G SV +I + Sbjct: 456 AVIALVHAE----YIHDIADIFSLHMHREELIAS--GLIGRAK-SVDQRLAAIEASKQNP 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER + LGI +G A +L + + S I+ + + ++ VP +G+I A Sbjct: 509 PERLLTGLGIAGIGRAAAAALMQEFSS-------IDALQEAARESPERILAVPDMGEITA 561 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSI-GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 Q + EF+ + + CA+ L+ + G + V + + K V TGTL + R + Sbjct: 562 QKLTEFFSSA-SACALLDRLRAAGVNFAGTRTERVGAALAGKSFVITGTLPTLSREECSA 620 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T G +V +S+KTD ++ G+ G KL+KA+ L + I++E ++ + Sbjct: 621 LITAHGGLVKGSVSKKTDYLVAGEAAGRKLKKAEDLSIPILDEAALRAMISE 672 >gi|304436815|ref|ZP_07396781.1| NAD-dependent DNA ligase LigA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370187|gb|EFM23846.1| NAD-dependent DNA ligase LigA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 677 Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 222/712 (31%), Positives = 365/712 (51%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I++ + ELS L ++I + YY ++ I D ++D L R + A+P+L N Sbjct: 4 IDEVKTELSELRRKIRKYSKQYYDDNESEISDYDFDMLMMRLKKLEAAYPELITK---NS 60 Query: 74 PLNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +GG + V H +P LSL+ +++ E++ F+ + + + F +E Sbjct: 61 PTRTVGGSAQREVGLLVPHDVPMLSLQDVFSEEEIHAFVDNVLAHFPAAE-----FVVEE 115 Query: 133 KIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG + +RYE G A RGDG GEDV+A R I + + L +P EVRGEV Sbjct: 116 KIDGLSLALRYENGVLARAITRGDGIVQGEDVTANARVIDDVVQKLHDALP-YFEVRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y+ + F +N+ +G KP+ANPRN A+G LR+L+ + IT R L+ FV L ++ Sbjct: 175 YMKRAAFAEVNERQELLGLKPFANPRNCAAGTLRQLD-SRITKERRLSMFVFNLQRSDGR 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E M+ G R T + + E+ R +LPYDIDG V KV+ F Sbjct: 234 VFSSHTEAYVFMQSQGIKTIANYRVCRTAEEVWAAIEEIGVRRGSLPYDIDGAVVKVNSF 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +++++LG A++PRW I++K+ ++ T L DI++ +GRTG +TP A +PV + G + Sbjct: 294 AMREELGVTAKAPRWAIAYKYPPEEKETVLRDIELSVGRTGRITPTAVFDPVGLCGTRVE 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+DYI L DIR+GD +LV ++GE+IP+V ++ ++R +++P+ Sbjct: 354 RATLHNQDYIDSL-----------DIRIGDTILVYKSGEIIPRVKAVLKDKRPQNSRPYV 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP+C + VR+ + A RC + C AQ L +FVSR A +I+GLG Sbjct: 403 IPDVCPVCGAHAVREAD------TADMRCQNPV-CPAQIENHLLNFVSRSAMDIKGLGAA 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + A I A+IF+L ++ ++G SV +I + Sbjct: 456 AVIALVH----AGYIHDVAEIFSLHEHREELVAS--GLIGRAK-SVDQRLAAIEASKQNP 508 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ER + LGI +G A +L + + S I+ + + ++ VP +G+I Sbjct: 509 PERLLTGLGIAGIGRAAAAALMQEFSS-------IDALQEAARESPERILAVPDMGEITV 561 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSI-GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 Q + EF+ + + CA+ L+ + G + V + + K V TGTL + R + Sbjct: 562 QKLTEFFSSA-SACALLDRLRAAGVNFAGTRTERVGTALAGKSFVITGTLPTLSREECSA 620 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T G +V +S+KTD ++ G+ GSKL+KA+ LG+ +++E ++ + Sbjct: 621 LITAHGGLVKGSVSKKTDYLVAGEAAGSKLKKAEDLGIPVLDEAALRAMISE 672 >gi|213865477|ref|ZP_03387596.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 423 Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 179/448 (39%), Positives = 276/448 (61%), Gaps = 32/448 (7%) Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRG 189 E K+DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRG Sbjct: 1 ELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRG 60 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KT 246 EV++ + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 61 EVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEG 120 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E+ +LQ + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV Sbjct: 121 GELPDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 179 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G Sbjct: 180 NSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGV 239 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + Sbjct: 240 LVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR 288 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FP+ CP+C S V R G+ A RCTGGL C AQ+ E LKHFVSR A +++G+ Sbjct: 289 PIVFPTHCPVCGSDVER----VEGE--AVTRCTGGLICGAQRKESLKHFVSRWAMDVDGM 342 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +D + E + PAD+F L + K+ + G S N+ +++ K + Sbjct: 343 GDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQNVVNALEKAK 392 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYY 574 + RF+++LGIR VG A LA Y+ Sbjct: 393 ATTFARFLYALGIREVGEATAAGLAAYF 420 >gi|237743296|ref|ZP_04573777.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1] gi|229433075|gb|EEO43287.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1] Length = 696 Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 221/706 (31%), Positives = 378/706 (53%), Gaps = 50/706 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++++ + D YY +K +I D E+D L + +++ +P + ++ + P +G + Sbjct: 34 LREDLNKYRDSYYNDNKSLISDYEFDILLKELESLEEKYP---QYKEISSPTTSVGASLK 90 Query: 84 LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + FK V H P LSL +NI ++ FI RI + K+ + + + LE K+DG I++ Sbjct: 91 ENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISKEQE--LKYCLEVKLDGLSISLT 148 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV + F LN Sbjct: 149 YRQGKLVRAVTRGDGLIGEDVTENILEIASIVKTLPQAID--MEIRGEVVLPLASFEKLN 206 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 +E + G + +ANPRNAASG LR+L+ + R L+ + + L + ++ K E ++ + Sbjct: 207 NERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADKLGFKSHSESIKFL 266 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 +G T I + + R LPY+ DGLV KVDE +L ++G +++ Sbjct: 267 ESMGIKTTGIFELLETSKEIEKRIDYWEKERENLPYETDGLVIKVDEINLWNEIGFTSKT 326 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++KF Q ST L + Q+GRTG LTPVA L+ V + G+ + A+LHN I+ Sbjct: 327 PRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSGSKVKRASLHNISEIQ- 385 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +DIR+GDRV +++A E+IP++V I +R + + P CP+C ++ Sbjct: 386 ----------RKDIRIGDRVFIEKAAEIIPQIVKSIKEDRTGNEKIIEEPVNCPVCNHKL 435 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R+ + + +C C A+ +++FVSRDA NI GLG + ++ F D Sbjct: 436 ERE------EGLVDIKCVNE-ECPAKVQGEIEYFVSRDALNIMGLGSKIVEKFI---DLG 485 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + I+ DI+ L+ ++ +ENI G S+ NL +SI + +N ++ I++LGI Sbjct: 486 Y-IKTVVDIYDLKNHREA----LENIDKMGKRSIENLLNSIEESKNRDYDKVIYALGIAE 540 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G ++ LAK ++ I+ ++ ++ L + +G+I A I+ F+ +N Sbjct: 541 IGKVTSKILAKA-------SKNIDKLMTMTFEE---LTSIDGIGEIAANEIIAFFAKEKN 590 Query: 622 ICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 ++ L LK + +N++ K +FTGTL+ R + +E + +LG Sbjct: 591 QKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKN 650 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 651 LSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 696 >gi|315586702|gb|ADU41083.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 35A] Length = 656 Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 236/701 (33%), Positives = 365/701 (52%), Gaps = 68/701 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P+ S N P K+G S Sbjct: 18 LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGAITTNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----STSFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP V++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHVIAYNGE--IEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 ++NPRNAASG LR+L+ + IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFSNPRNAASGSLRQLD-SKITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSAIQHLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + + ++ SS +K +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++++ Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656 >gi|258651684|ref|YP_003200840.1| DNA ligase, NAD-dependent [Nakamurella multipartita DSM 44233] gi|258554909|gb|ACV77851.1| DNA ligase, NAD-dependent [Nakamurella multipartita DSM 44233] Length = 736 Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 220/699 (31%), Positives = 353/699 (50%), Gaps = 57/699 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D E+D + R D + +P L P+ P ++GG V H+ Sbjct: 41 YYVLDAPTMSDGEFDTVLRELDGLEEQYPSL---RTPDSPTQRVGGGFATEFGAVEHAER 97 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ +++ ++L ++ R R + + E KIDG + + YE+G+ + AA R Sbjct: 98 LLSLDNVFSADELAGWLARTAR----DAGTPVSWLTELKIDGLAVNLTYERGRLIRAATR 153 Query: 155 GDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 GDG GEDV+ +R I +P L + ++PE +E+RGEV+ F LN ++A G+ Sbjct: 154 GDGRVGEDVTLNVRTIAAVPERLRDDGAHDVPEFVEIRGEVFFPLEAFEELNASLVAAGK 213 Query: 211 KPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV- 268 P+ANPRN+A+G LR+ +P +R L HG+G Q + ++R G P+ Sbjct: 214 APFANPRNSAAGSLRQKDPRVTASRRLTMLCHGIGARVGFDITRQSQAYDRLRSWGLPIS 273 Query: 269 --NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 N V+ ++Y+ E R L +DIDGLV KVDE ++Q++LG +R+PRW I Sbjct: 274 DHNQVVQTEQEVADRIAYWAEH---RHDLSHDIDGLVVKVDEVAVQRRLGSTSRAPRWAI 330 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++K+ ++A+T L DI + +GRTG +TP A LEPV I G+ + ATLHN+D ++ Sbjct: 331 AYKYPPEEATTLLRDIQVNVGRTGRVTPFAVLEPVLIAGSTVGMATLHNQDEVR------ 384 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFPSFCPICQSRVVRDL 445 R G +++GD V+V++AG+VIP+++ +V+ R + F P+ CP C + L Sbjct: 385 ---RKG--VQIGDTVVVRKAGDVIPEILGPVVDLREGRTLREFVMPTHCPECGTA----L 435 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 P V RC +C AQ ER+ H R AF+IEG+G + + +I Sbjct: 436 APAKENDVDI-RCPNSRSCPAQLRERVFHLAGRGAFDIEGMGYEAAVALLAAG----AIT 490 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 DIF L + G + L ++ ++ L R + +L IRHVG Sbjct: 491 DEGDIFDLDEDRLLGVPLFTTKAGALSANGRKLLANLQICKDQPLWRVLVALSIRHVGPT 550 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 AR+L AQ+ ++ A L VG IA A++E++ + Sbjct: 551 AARAL----------AQQFGSLPAIRAAAQEELAAAEGVGPTIADAVIEWF----TVDWH 596 Query: 626 EALLKEVSPSIGRHEKNVSSEIENK----KLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 ++ + + + R + ++ E +V TG L R +A+ + GA +A + Sbjct: 597 RQIVDKWAAAGVRMQDEITDRPEQTLAGLSVVVTGGLDGFSRDEAKAALLSRGAKAAASV 656 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KT ++VGD+PGSK +KA LGV I++E F LL++ Sbjct: 657 SAKTAFVVVGDSPGSKYDKALGLGVPILDEAGFRVLLER 695 >gi|113954059|ref|YP_731994.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9311] gi|122945488|sp|Q0I6C8|DNLJ_SYNS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|113881410|gb|ABI46368.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9311] Length = 697 Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 218/707 (30%), Positives = 357/707 (50%), Gaps = 63/707 (8%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P + D YD L R + H L ++ P ++GG + V+H I Sbjct: 30 AYYVLDAPDMEDPVYDQLYRELQDLEHQDSTLVSADSPT---QRVGGRLADGFRSVSHRI 86 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIFFTLEPKIDGTMITIRYEKGKF 148 SL+ +N ++L + +R+ + + ++ E KIDG + + YE G Sbjct: 87 SLFSLDNAFNRDELHGWYSRLLKALDRTPAAGSPPPTLPMVGELKIDGNALALSYENGVL 146 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG GE+++A +R I +IP L L +P +EVRGE +I F A+N+E ++ Sbjct: 147 VRAATRGDGEQGEEITANVRTISSIPLRLHLEPVPAWVEVRGEAFIPDATFHAINNERLS 206 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK---GQYEMLQKMRC 263 +ANPRNA +G LR+L+P+ + R L+FF + L E + Q++ LQ + Sbjct: 207 RDESLFANPRNACAGTLRQLDPSVVAARRLDFFAYTLHLPDEWQERRPLTQWDALQWLGD 266 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 GF VN + +++ + R L Y DG+V K+++ LQ G ++PR Sbjct: 267 AGFKVNPNAGLLPDLQAVEQFFDTWDTERRQLDYATDGVVVKLNDLRLQDAAGFTQKAPR 326 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W I+ K+ ++A +++L I Q+GRTG++TPVA EPV + G ++ A+LHN D + L Sbjct: 327 WAIALKYPAEEAPSKILRISYQVGRTGVITPVAEFEPVGLAGTSVSRASLHNADRLVEL- 385 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 D+ GD ++V++AGE+IP+VV ++ R AQP CP C S +VR Sbjct: 386 ----------DLHDGDTIVVRKAGEIIPEVVRVLPELRPALAQPLEITKTCPACGSTLVR 435 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 + N +A RC +C A L+H+VS+ A +I+GLG + ++ D Sbjct: 436 ESNE------SATRCINS-SCPAILRGALRHWVSKGAMDIDGLGSKLIEQLV---DRGLV 485 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 I AD++ L S ++ G S NL ++N R+ + ++ LGI HVG Sbjct: 486 QSI-ADLYRLDMALLGSLERM------GSKSAENLIQALNASRSQGWAKQLYGLGIHHVG 538 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 A+++ + + A +N H + S+ + VG IAQ++ +++ +P N Sbjct: 539 DVNAKAITTAFPN----ADSLNQAACHAPE---SITAIFGVGKEIAQSLQQWFSSPAN-- 589 Query: 624 AVEALLKEV-----SPSIGRHEKNVSS------EIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + LL E+ S S+ E++ ++ + V TGTL + R +A+E + Sbjct: 590 --QRLLDELRSLGFSLSLNEEEQSRATTAAANHHLTGSTFVLTGTLPTLTRSQAKEQIEA 647 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS +S+KT ++ G+ GSKL KAQ+LGV I++EE +L+ Sbjct: 648 CGGKVSGSVSKKTSYLVAGEEAGSKLTKAQELGVSILDEEALQNMLR 694 >gi|325510083|gb|ADZ21719.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018] Length = 669 Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 220/712 (30%), Positives = 362/712 (50%), Gaps = 70/712 (9%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +E++ + YY PI+ D EYD +R D + + P P N++G Sbjct: 11 MQELIEELNKYSYSYYVLDNPIVADKEYD---KRYDELVE-LEEKTGITYPYSPTNRVGD 66 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKI 134 + K TH SL+K + E++ + R + + + N + + L K Sbjct: 67 VILKQFQKYTHKSRLWSLDKAQSFEEIIDWHNRNKKAVAEYNSNHEDKLPELKYVLTKKF 126 Query: 135 DGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG I Y E G + AA RG G GED+++ + I +IP L + ++EV GE + Sbjct: 127 DGLTINCTYDESGVMIKAATRGTGVIGEDITSQAKTIKSIP--LKIKNGSVVEVHGEAIM 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAK 252 +K F N + P N RN A+G LR LN + R L+ F + +G K Sbjct: 185 TKTAFNEYNKK----AEVPLKNLRNGAAGALRNLNVRETARRNLSAFFYDVGYNEGKAFK 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 EM+ ++ +GFPV+ +++ NT I + IRS+L YDIDG+V +D++ + Sbjct: 241 SYMEMMNFIKEMGFPVDEYLKECNTIEEINKEIQYVGDIRSSLDYDIDGVVIVIDDYRTR 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G ++ AT Sbjct: 301 EYLGYTVKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVIVKRAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L+N D I G + +++G RV V+R+ +VIP+++ + + + P+ Sbjct: 361 LNNMDDI-----------GRKKVKIGSRVFVRRSNDVIPEIMGVTEETEGETNEIEA-PT 408 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C S +V++ H C L+C Q ++ + HF SR+A NIEG ++ Sbjct: 409 ICPYCGSEIVKE---------GVHLFCENTLSCKPQMVKSIVHFASREAMNIEGFSEKTA 459 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ +I+ +D++ + + + S K F D +NL ++I K + L Sbjct: 460 EQLFEK----LNIKSISDLYRITKEELMSLDK------FKDKKASNLINAIEKSKKCDLA 509 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 F++SLGI +VG + A L K + S++N + + LI V +G I+A++ Sbjct: 510 SFVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYDELILVQDIGSIVAES 559 Query: 612 IVEFYQNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IVEF++ + +E L E V+P E V + K +V TGTLQ R Sbjct: 560 IVEFFKQEK----IEKSLNELFELGVTPFYEESEV-VENAFTGKTVVATGTLQNYSRTAI 614 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + LGA V+ +S+KTD +I G+N GSK +KA QLGVKI+ EE+F L+ Sbjct: 615 KEKLESLGANVAGSVSKKTDYVIAGENAGSKYDKAVQLGVKILTEEEFEELI 666 >gi|308063596|gb|ADO05483.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Sat464] Length = 656 Score = 330 bits (846), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 234/701 (33%), Positives = 366/701 (52%), Gaps = 68/701 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + P+ ++ N P K+G S Sbjct: 18 LSHH---YYNLDDPIVSDAVYDELYQELKVYEEKNPNNIQA---NSPTQKVGAITTNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ N E IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYN--EEIEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+++ ++IT R L F G+GK S F+ + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQID-SEITKKRKLQFIPWGVGKHSLNFSSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + ++ SS +K +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDMTEEKQENSSVFNHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++++ Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656 >gi|15895931|ref|NP_349280.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824] gi|81529669|sp|Q97FQ5|DNLJ2_CLOAB RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|15025704|gb|AAK80620.1|AE007765_2 NAD-dependent DNA ligase [Clostridium acetobutylicum ATCC 824] Length = 669 Score = 330 bits (846), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 219/708 (30%), Positives = 360/708 (50%), Gaps = 70/708 (9%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L +E++ + YY PI+ D EYD +R D + + P P N++G Sbjct: 11 MQELIEELNKYSYSYYVLDNPIVADKEYD---KRYDELVE-LEEKTGITYPYSPTNRVGD 66 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKI 134 + K TH SL+K + E++ + R + + + N + + L K Sbjct: 67 VILKQFQKYTHKSRLWSLDKAQSFEEIIDWHNRNKKAVAEYNSNHEDKLPELKYVLTKKF 126 Query: 135 DGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG I Y E G + AA RG G GED+++ + I +IP L + ++EV GE + Sbjct: 127 DGLTINCTYDESGVMIKAATRGTGVIGEDITSQAKTIKSIP--LKIKNGSVVEVHGEAIM 184 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAK 252 +K F N + P N RN A+G LR LN + R L+ F + +G K Sbjct: 185 TKTAFNEYNKK----AEVPLKNLRNGAAGALRNLNVRETARRNLSAFFYDVGYNEGKAFK 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 EM+ ++ +GFPV+ +++ NT I + IRS+L YDIDG+V +D++ + Sbjct: 241 SYMEMMNFIKEMGFPVDEYLKECNTIEEINKEIQYVGDIRSSLDYDIDGVVIVIDDYRTR 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G ++ AT Sbjct: 301 EYLGYTVKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVIVKRAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L+N D I G + +++G RV V+R+ +VIP+++ + + + P+ Sbjct: 361 LNNMDDI-----------GRKKVKIGSRVFVRRSNDVIPEIMGVTEETEGETNEIEA-PT 408 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C S +V++ H C L+C Q ++ + HF SR+A NIEG ++ Sbjct: 409 ICPYCGSEIVKE---------GVHLFCENTLSCKPQMVKSIVHFASREAMNIEGFSEKTA 459 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + F+ +I+ +D++ + + + S K F D +NL ++I K + L Sbjct: 460 EQLFEK----LNIKSISDLYRITKEELMSLDK------FKDKKASNLINAIEKSKKCDLA 509 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 F++SLGI +VG + A L K + S++N + + LI V +G I+A++ Sbjct: 510 SFVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYDELILVQDIGSIVAES 559 Query: 612 IVEFYQNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IVEF++ + +E L E V+P E V + K +V TGTLQ R Sbjct: 560 IVEFFKQEK----IEKSLNELFELGVTPFYEESEV-VENAFTGKTVVATGTLQNYSRTAI 614 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +E + LGA V+ +S+KTD +I G+N GSK +KA QLGVKI+ EE+F Sbjct: 615 KEKLESLGANVAGSVSKKTDYVIAGENAGSKYDKAVQLGVKILTEEEF 662 >gi|33864448|ref|NP_896008.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT 9313] gi|81576658|sp|Q7V3Z9|DNLJ_PROMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33641228|emb|CAE22358.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9313] Length = 696 Score = 330 bits (845), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 217/732 (29%), Positives = 361/732 (49%), Gaps = 79/732 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K + L Q ++ YY P + D+ YD L R + L P+ P +I Sbjct: 10 KRAAELRQLLNQAAHSYYVLDTPTMEDAVYDRLYRELLNLEAKDSSLL---TPDSPTQRI 66 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-----QKKDDNSIFFTLEPK 133 GG V H IP LSL+ +N+++L + R+ + K + E K Sbjct: 67 GGAPAQGFASVQHRIPLLSLDNAFNVDELTGWYVRLAKLLGHQTNPKTPQPDLSMVGELK 126 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 IDG + + YE G + AA RGDG +GE+++A +R I +IP L L + P +EVRGE + Sbjct: 127 IDGNALALSYEHGVLIRAATRGDGANGEEITANVRTIASIPLRLQLVHPPAWLEVRGEAF 186 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFA 251 I + F +N G +ANPRNA +G LR+L+P + +R L+FF + L A Sbjct: 187 IPNSTFADINTARGKRGDVAFANPRNACAGTLRQLDPKVVASRQLDFFAYTLHLPDNWQA 246 Query: 252 KG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 K Q+ LQ ++ +GF VN + +++ R LPY DG+V Sbjct: 247 KAHDPARPMNQWAALQWLQAIGFKVNPNTALLADLTAVENFFKLWDEDRHQLPYATDGVV 306 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+++ LQ+ G ++PRW I+ K+A ++A ++LL + Q+GRTG +TPVA E + + Sbjct: 307 VKLNDLQLQETAGFTQKAPRWAIALKYAAEEAPSKLLRLTCQVGRTGAVTPVAEFEAIPL 366 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ ATLHN + + L D+ GD ++V++AGE+IP+V+ ++ R Sbjct: 367 AGTSVSRATLHNANRVSEL-----------DLHSGDTIVVRKAGEIIPEVIGVLRELRPA 415 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 AQ P CP C+S +VR+ + AA RC +C A L+H+VS+ A ++ Sbjct: 416 GAQTLKLPHICPECRSDLVREEDE------AATRCVNS-SCPAILRGTLRHWVSKGALDV 468 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG + ++ ++ AD++ L+ S ++ G S NL ++ Sbjct: 469 DGLGSKLIEQLVNRG----LVQSIADLYALEASLLASMDRM------GSKSTANLITALQ 518 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-------QEINNIIAHNNDDWL 596 ++ + ++ LGI HVG A++LAK + S A ++I ++ Sbjct: 519 ASKSKPWHKQLYGLGIHHVGEVNAKALAKKFPSAATLATAACKAPEQITSVFG------- 571 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNI----------CAVEALLKEVSPSIGRHEKNVSSE 646 VG+ IAQ++ +++ P N ++EA E++ ++++ VS Sbjct: 572 -------VGNEIAQSLQQWFATPANQQLLAKLKQLGISLEANEDELAHDTDQNQRTVS-- 622 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +E + V TGTL + R +AQ + G V+ +S+ T ++ G GSKL KA++L V Sbjct: 623 LEGQTFVLTGTLPTLSRSEAQALIEASGGKVNNSVSKNTSYVVAGVAAGSKLNKAEKLEV 682 Query: 707 KIMNEEQFLFLL 718 ++N+E+ L LL Sbjct: 683 TVLNQEELLKLL 694 >gi|271969279|ref|YP_003343475.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021] gi|270512454|gb|ACZ90732.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021] Length = 726 Score = 330 bits (845), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 225/750 (30%), Positives = 372/750 (49%), Gaps = 81/750 (10%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 +P+ AL EL+ L ++ ++ Y+ P + D++YD R I P L Sbjct: 8 VPVAALD---RHAELTELVEQANWR---YHVLDSPTVSDAQYDTWMRELRGIEEEHPSL- 60 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P K+G ++ V H SL+ +N +DL + R R ++ + Sbjct: 61 --RTPDSPTQKVGAPISSDFTPVAHLQRMESLDNAFNADDLASWQARAERLAER---DPA 115 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEII 185 + E KIDG I + YEKG+ V A RGDG G+DV+A +R + +P R+ ++P+++ Sbjct: 116 PYLCELKIDGLAIALVYEKGRLVRGATRGDGRVGDDVTANVRTVAGVPHRLAGDDVPDLV 175 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEVY+ + F+ LN++++A G+ P+ANPRN+A+G LR +P R L+ VHG+G Sbjct: 176 EIRGEVYMPVDGFVKLNEQLVAAGKAPFANPRNSAAGSLRMKDPRITAQRPLHLIVHGVG 235 Query: 245 K-TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + + Q + +++R G PV++ + + GI ++ + R Y+IDG+V Sbjct: 236 RWEGTALPRTQSGVYERLREFGLPVSDLYKVVDDLDGINAFIEFYREHRHDPAYEIDGVV 295 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVD LQ LG +R+PRW I++K+ ++ +T+LLDI + +GRTG +TP +EP+ + Sbjct: 296 VKVDRIELQNNLGSTSRAPRWAIAYKYPPEEVNTKLLDIQVGVGRTGRVTPYGVMEPIVV 355 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ + ATLHN +V R G +R+GD V++++AG+VIP++V +V+ R Sbjct: 356 AGSTVERATLHN---------GSEVARKG--VRIGDTVVLRKAGDVIPEIVGPVVDLRDG 404 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + F+ P+ CP C + + + K G A RC AC AQ ER+ R A +I Sbjct: 405 TEREFTMPTHCPECGTALAYE---KEGD--ADLRCPNTRACPAQLRERIFFAAGRRALDI 459 Query: 484 EGLG---KQQLDFFFKSEDPAFSIRIPADIFTLQ-----------RRQQTSTTKIE---- 525 EGLG L ++P +R AD+F L R T K + Sbjct: 460 EGLGYVAATALTQPLPPQEP--PVRTEADLFDLTIERLLPIRSVVRDPDTGLPKTDPETG 517 Query: 526 ---------NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 N G + + + + K ++ + R + +L IRHVG A+++A + S Sbjct: 518 DPKVVAFFANQSGEPSKNAEKMLEELEKAKDQPVWRVLVALSIRHVGPPTAQAIAAEFRS 577 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP--RNIC----AVEALLK 630 A +A VG +A AI ++++ R I A ++ Sbjct: 578 IDAIAAASEEELAAVEG----------VGPRVAAAIRDWFEVDWHREIVDRWKAAGVRME 627 Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 + P+ + + V TGTL+ R +A + G VS+ +S+KT ++ Sbjct: 628 DEPPT-----DQLPQTLAGLTFVVTGTLEAFTRDEAGAALAARGGKVSSSVSKKTAFLVA 682 Query: 691 GDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G+N GSK +KA +LGV I++EE LL + Sbjct: 683 GENAGSKFDKAVKLGVPILDEEGLRVLLAE 712 >gi|194246669|ref|YP_002004308.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali] gi|254781388|sp|B3QZS5|DNLJ_PHYMT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193807026|emb|CAP18462.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali] Length = 659 Score = 330 bits (845), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 228/708 (32%), Positives = 376/708 (53%), Gaps = 61/708 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E+ +K + L +I+ + YY ++ + D +YDAL R + +P+ P Sbjct: 1 MEEIKKRIIFLIDKINKTNYEYYTLNESSLNDQQYDALFRELLYLESKYPEYNYKFSPT- 59 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 KIGG ++ K H LSL ++NI++L+ F RI KK N T E K Sbjct: 60 --TKIGGPISSKFHKFLHEKSMLSLNNVFNIKELKLFYDRI----SKKISNFTLLT-ELK 112 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG ++++Y+KG A RGDG+ GE ++ ++ I +P L L P +EVRGEVY+ Sbjct: 113 IDGLAVSLKYKKGILDKAITRGDGYQGELITDNVKTIKELP--LKLKEPLDLEVRGEVYM 170 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 S F LN + +ANPRNAASG LR+L+ R L+ F++ + + F Sbjct: 171 SYESFNYLNQIRKKENKSLFANPRNAASGTLRQLDSKVAAERNLSIFLYTIVNPPK-FII 229 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIV---SYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q +L+ + L FPVNN + ++ SYY E I++ L Y+ DG+V K++E Sbjct: 230 TQKSILEFLTYLQFPVNNYYEYVLNWDQLIKKISYYEE---IKNHLGYNTDGIVIKINEL 286 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 S +G +++P+W I++KF + T + +I QIGRTGI+TP+A L P + G++I+ Sbjct: 287 SFHSIIGYTSKAPKWAIAYKFKVFKTETLINNILFQIGRTGIVTPIAELLPTIVDGSVIS 346 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 LHN DYIK +DIRV D VLV ++G +IP+++++I +R + PF Sbjct: 347 KVNLHNFDYIK-----------QKDIRVNDFVLVHKSGSIIPEIIEVIKTKR-KNQIPFE 394 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 + C C +++++ + H C L C ++++ L +FVS+ A +I LG Q Sbjct: 395 MITHCYSCNTKLIKK--------DSNHFCF-NLDCEEKKIQELFYFVSKSAMDINVLGLQ 445 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L F F I +D+++L + ++ ++E + GFG N+ S+ K +N Sbjct: 446 TLKILFYK---GF-INNISDLYSLNQYKK----EVEELHGFGKKKFNNIIISLEKSKNKC 497 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L F+ LGI++VG +A+ L AQ+ NI SL+++ +G A Sbjct: 498 LSNFLIGLGIKNVGIHLAKIL----------AQKFENIDNLQKASIESLLKIDEIGIKSA 547 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKA 666 Q I F+ N +N+ +E K + ++ + ++ +NKK++FTG L+K R++A Sbjct: 548 QNIKNFFLNSKNLKLIEK-FKNLGLNLFYFKSKNNIKNNIFKNKKVIFTGILEKYSRNQA 606 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 Q V +LG V+ ++ KT+ +I+G NPGSKL KA++ +K++ E +F Sbjct: 607 QNIVIELGGVIINSITNKTNYLILGKNPGSKLLKAKKFNIKVLQEHEF 654 >gi|319939188|ref|ZP_08013551.1| DNA ligase [Streptococcus anginosus 1_2_62CV] gi|319811584|gb|EFW07860.1| DNA ligase [Streptococcus anginosus 1_2_62CV] Length = 652 Score = 329 bits (844), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 216/682 (31%), Positives = 351/682 (51%), Gaps = 59/682 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L + +P+ + P+ P +++GG++ K H P Sbjct: 19 YYTTDNPSVSDSEYDKLYHELLDLEKQYPEFVQ---PDSPTHRVGGKVLEGFEKYQHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F RI +KD + + E KIDG I++ YE G V A R Sbjct: 76 LYSLQDAFSREELDVFDARI-----RKDFPDVSYLCELKIDGLSISLMYENGILVAGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +P ++ VRGE Y+ ++ F A+N G Sbjct: 131 GDGSVGENITENLKRVKDIP----LKLPSEVDMTVRGECYMPRSSFDAVNQLRQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 +ANPRNAA+G LR+L+ T I N + S A Q +L ++ GF VN Sbjct: 187 FANPRNAAAGTLRQLD-TAIVAKRNLATFLYQEASPTSATSQEAVLNQLSKNGFSVNERH 245 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 A++ + E+ R LPYDIDG+V KV++ +Q++LG ++P+W I++KF Sbjct: 246 ILAHSMDEAWQFIEEINQEREQLPYDIDGVVIKVNDLVVQEELGFTVKAPKWAIAYKFPA 305 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 306 EEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI-----------AE 354 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 +DIR D V+V +AG++IP V+ ++ ++R + P CP C S ++ + Sbjct: 355 KDIRKDDTVIVYKAGDIIPAVLRVVESKRQ-SKEKLEIPKNCPSCNSELIHFEDE----- 408 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 A RC C AQ E L HF SRDA NI GLG ++ F + + D+ Sbjct: 409 -VALRCINP-RCPAQIKEGLIHFASRDAMNITGLGPAVVEKLFDQQ-------LVNDVAG 459 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 + R ++EN F + S LY +I + S E+ +F LGIRHVG++ ++ L + Sbjct: 460 IYRLTVKDLLQLEN---FKEKSANKLYTAIQASKENSAEKLLFGLGIRHVGSKASQILLE 516 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRNICAVEALLKE 631 ++ + A+ IA + +G +IA+++ ++ Q +I E LKE Sbjct: 517 HFHDLEQLAKAKREEIAALDS----------LGMVIAESLSSYFAQEGTHILLSE--LKE 564 Query: 632 VSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 + + V+++ + +V TG L+++ R +A++ + LGA V+ +S+KT +++ Sbjct: 565 AGLNFTYLGEKVAADAALSGLTVVLTGKLERLNRSEAKKKLESLGAKVTNSVSKKTSLVV 624 Query: 690 VGDNPGSKLEKAQQLGVKIMNE 711 G + GSKL KAQ+LG+ I +E Sbjct: 625 AGADAGSKLTKAQELGIIIRDE 646 >gi|171920195|ref|ZP_02931577.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902576|gb|EDT48865.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 673 Score = 329 bits (844), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 222/714 (31%), Positives = 380/714 (53%), Gaps = 64/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + ++ L+Q++ + YY P + D YD R + + +P + N Sbjct: 1 MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130 P K+GG ++ KV H P LSL +N +DL+KF Q + S+ + + Sbjct: 58 PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFD-------QDNQNASVDLKGYVV 110 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189 EPKIDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRG Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EVY++ +DF +ND + +K +ANPRNAA+G LR L+ + + R L+ F++ L E Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + K YE +Q +R F V++ + + +T + +++ + +R L Y IDG+V K++ Sbjct: 230 LGIKTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINN 289 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMV 349 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPY 398 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ Sbjct: 399 EPIINCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSD 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545 ++ F+ A I+ AD++ LQ+ ++ TS KI+ + S +NL +SIN Sbjct: 453 AIINKFY----DANLIKNIADLYYLQKHKEFILTSDFKIK------EKSFSNLINSINNS 502 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + SLE + + GIRHVG +A+ +AK + + + ++ N D+ L V G Sbjct: 503 KKCSLEFLLTAFGIRHVGPNLAKKIAKQF-------KTMTALMRANFDE---LTNVDACG 552 Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + A +++ ++ + N+ V L ++ + I N+ E +NK V TG+ Sbjct: 553 EKAASSLINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS 612 Query: 660 KIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 I R + + + + A V +S+KTD ++VG G+KLEKA+ LGVKI+ E Sbjct: 613 -ISRDEIKTILEKYYHAKVKNSVSKKTDYVLVGTEAGTKLEKAKLLGVKIIENE 665 >gi|261839558|gb|ACX99323.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 52] Length = 657 Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 236/699 (33%), Positives = 363/699 (51%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P+ S N P K+G S Sbjct: 18 LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGATTPNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKFDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVSATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FNSIQYLSLNKNYQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + + ++ SS +K +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++ Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKE 654 >gi|13357678|ref|NP_077952.1| DNA ligase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762219|ref|YP_001752204.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508850|ref|ZP_02958298.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|81549679|sp|Q9PR23|DNLJ_UREPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781447|sp|B1AIB0|DNLJ_UREP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|11272940|pir||F82930 DNA ligase UU121 [imported] - Ureaplasma urealyticum gi|6899079|gb|AAF30527.1|AE002113_1 DNA ligase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827796|gb|ACA33058.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675825|gb|EDT87730.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 673 Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 223/714 (31%), Positives = 379/714 (53%), Gaps = 64/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + ++ L+Q++ + YY P + D YD R + + +P + N Sbjct: 1 MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130 P K+GG ++ KV H P LSL +N +DL+KF Q + S+ + + Sbjct: 58 PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFD-------QDNQNASVDLKGYVV 110 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189 EPKIDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRG Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EVY++ +DF +ND + +K +ANPRNAA+G LR L+ + + R L+ F++ L E Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + K YE +Q +R F V++ + + +T + +++ + +R L Y IDG+V K++ Sbjct: 230 LGIKTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINN 289 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMV 349 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPY 398 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ Sbjct: 399 EPIINCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSD 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545 ++ F+ A I+ AD++ LQ+ ++ TS KI+ + S +NL +SIN Sbjct: 453 AIINKFY----DANLIKNIADLYYLQKHKEFILTSDFKIK------EKSFSNLINSINNS 502 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + SLE + + GIRHVG +A+ +AK + + + H N D L+ V G Sbjct: 503 KKCSLEFLLTAFGIRHVGPNLAKKIAKQFKTMT--------ALMHANFDELT--NVDACG 552 Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + A +++ ++ + N+ V L ++ + I N+ E +NK V TG+ Sbjct: 553 EKAALSLINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS 612 Query: 660 KIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 I R + + + + A V +S+KTD ++VG G+KLEKA+ LGVKI+ E Sbjct: 613 -ISRDEIKTILEKYYHAKVKNSVSKKTDYVLVGTEAGTKLEKAKLLGVKIIENE 665 >gi|225550545|ref|ZP_03771494.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379699|gb|EEH02061.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 673 Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 222/719 (30%), Positives = 378/719 (52%), Gaps = 74/719 (10%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + +++ L+Q++ + YY P + D YD R + +A+P + N Sbjct: 1 MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130 P ++GG ++ KV H P LSL ++ DLRKF Q + S+ + + Sbjct: 58 PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFD-------QDNQNASVDLKGYVV 110 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189 EPKIDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRG Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EVY++ +DF +ND + +K +ANPRNAA+G LR L+ + + R L+ F++ L E Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + K YE +Q ++ F V++ + + +T +++ + +R+ L Y IDG+V K++ Sbjct: 230 LGIKTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINN 289 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIV 349 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPY 398 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ Sbjct: 399 ESITNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSD 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545 ++ F+ A I+ AD++ LQ+ ++ S KI+ D S +NL +SIN Sbjct: 453 AIINKFY----DANLIKNVADLYYLQKHKEFILASDFKIK------DKSFSNLINSINNS 502 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYY-----LSYQNFAQEINNIIAHNNDDWLSLIR 600 + SLE + + GIRHVG +A+ LAK + L + NF + L Sbjct: 503 KTRSLEFLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHANFGE---------------LTN 547 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVF 654 V G+ A +++ ++ + N+ V L ++ + I N+ E +NK V Sbjct: 548 VDACGEKAALSLINWFNDDHNVSLVNQLQQVGLNMEYIDDFIYDDNINIIDEYKNKTFVI 607 Query: 655 TGTLQKIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 TG+ I R + + + + A V +S+KTD ++ G G+KLEKA+ LGVKI+ E Sbjct: 608 TGSFS-ISRDEIKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKIIENE 665 >gi|317180385|dbj|BAJ58171.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F32] Length = 656 Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 237/701 (33%), Positives = 365/701 (52%), Gaps = 68/701 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P+ S N P K+G S Sbjct: 18 LSHH---YYNLDDPIVSDAVYDKLYQELKAYEEKNPN---SIQANSPTQKVGAITPNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K +H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNSHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FNSIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + I + ++ SS +K +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDIAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L+ ++ Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKGFD 656 >gi|315187042|gb|EFU20799.1| DNA ligase, NAD-dependent [Spirochaeta thermophila DSM 6578] Length = 697 Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 235/723 (32%), Positives = 365/723 (50%), Gaps = 73/723 (10%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++A++E+ L + + D YY +P + D EYD+L R + FP L R P Sbjct: 1 MTEQEAKREIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFERLKTLETRFPHLRR---P 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P+ ++G ++ + +V H+IP LSL+K + ++ +I + R K + F +E Sbjct: 58 DSPIQRVGSDLTVDFPEVAHTIPVLSLDKAYTETEVLSWIEKTERAAGK----PLGFVIE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RG 189 KIDG + + Y G A RG+G G D++ R I IP L IPE EV RG Sbjct: 114 EKIDGVSLVLYYRGGILDRAVTRGNGRVGNDITPNARTIRQIP----LRIPENGEVVVRG 169 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 EVY+ F DE+ A PYANPRN A G+LRR N ++ R F+ G Sbjct: 170 EVYLPLQYF----DEINARMEVPYANPRNLAGGVLRRKNSAEVARVPLHFLAYDGYLP-- 223 Query: 250 FAKGQY-EMLQKMRCLGFPVNNGVRQANTFHG-------IVSYYNEMKSIRSTLPYDIDG 301 F Y E L + GFPVN R G I ++ +S R+TL Y IDG Sbjct: 224 FPVATYTESLDYLIDWGFPVNP--RHERLPAGTPDREARIRTFIERERSGRATLDYQIDG 281 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 LV+KV+E ++++LG PRW I++KF QA T LL ID+Q+GRTG +TPVARL+PV Sbjct: 282 LVFKVNELDVRERLGYTGHHPRWAIAYKFEAPQAVTELLRIDVQVGRTGRVTPVARLKPV 341 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ I+N TLHNEDY++ L ++ GD V + + G+VIP + ++ E+ Sbjct: 342 ELSGSTISNVTLHNEDYVQAL-----------ELAPGDLVAISKRGDVIPAIEKVV--EK 388 Query: 422 HPDAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 + + P + P CP C S + R AH C A RLK FVS Sbjct: 389 NEEGVPVWRMPEHCPECGSPLERR---------GAHHFCPNRNCPAVITGRLKFFVSPKQ 439 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I LG + +DF + + RIP D++T K+ + GFG+ ++ + Sbjct: 440 MDIRVLGNETIDFLVEK---GYIRRIP-DLYTF------DYWKLLDEPGFGEKKISQIVQ 489 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA-HNNDDWLSLI 599 I + + + +LGI VG + +L + ++ I+ + + D +L Sbjct: 490 GIEESKKRPFSTVLVALGIPEVGPSVVETLIRGGIT------SIDRLFTIADRGDVEALT 543 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGT 657 R+ +G+ A+ ++E ++P +E L K S V S E + TG+ Sbjct: 544 RLEGIGEKTARQLMETLRDPEWRKEIEELRK-AGLSFEEERPTVVSGGPFEGQAWCVTGS 602 Query: 658 LQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 + R KA+E + LG V + +S KT ++VG+NPGSKLEKA+ LGV++++E+QF+ Sbjct: 603 FRHFTPRSKAEELIASLGGKVVSSVSSKTTHLLVGENPGSKLEKARSLGVRLVSEDQFIE 662 Query: 717 LLQ 719 +L+ Sbjct: 663 MLK 665 >gi|185178794|ref|ZP_02554752.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024241|ref|ZP_02569990.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518556|ref|ZP_03004016.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|209554205|ref|YP_002284543.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225551582|ref|ZP_03772528.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|254781448|sp|B5ZAV3|DNLJ_UREU1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|184209414|gb|EDU06457.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018900|gb|EDU56940.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997873|gb|EDU66970.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|209541706|gb|ACI59935.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379397|gb|EEH01762.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 673 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 222/719 (30%), Positives = 378/719 (52%), Gaps = 74/719 (10%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + +++ L+Q++ + YY P + D YD R + +A+P + N Sbjct: 1 MDRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130 P ++GG ++ KV H P LSL ++ DLRKF Q + S+ + + Sbjct: 58 PSVRVGGFVSEKFNKVKHKRPMLSLSNAFDANDLRKFD-------QDNQNASVDLKGYVV 110 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189 EPKIDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRG Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGVNGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EVY++ +DF +ND + +K +ANPRNAA+G LR L+ + + R L+ F++ L E Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + K YE +Q ++ F V++ + + +T +++ + +R+ L Y IDG+V K++ Sbjct: 230 LGIKTHYESIQFLKDNKFKVSDLIVKVDTIDEVINQIDRYTKVRNDLSYMIDGIVIKINN 289 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSIV 349 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPY 398 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ Sbjct: 399 ESITNCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSD 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545 ++ F+ A I+ AD++ LQ+ ++ S KI+ D S +NL +SIN Sbjct: 453 AIINKFY----DANLIKNVADLYYLQKHKEFILASDFKIK------DKSFSNLINSINNS 502 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYY-----LSYQNFAQEINNIIAHNNDDWLSLIR 600 + SLE + + GIRHVG +A+ LAK + L + NF + L Sbjct: 503 KTRSLEFLLTAFGIRHVGPNLAKKLAKQFKTMTTLMHANFGE---------------LTN 547 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVF 654 V G+ A +++ ++ + N+ V L ++ + I N+ E +NK V Sbjct: 548 VDACGEKAALSLINWFNDDHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVI 607 Query: 655 TGTLQKIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 TG+ I R + + + + A V +S+KTD ++ G G+KLEKA+ LGVKI+ E Sbjct: 608 TGSFS-ISRDEIKTILEKYYHAKVKNSVSKKTDYVLAGIEAGTKLEKAKLLGVKIIENE 665 >gi|261838144|gb|ACX97910.1| DNA ligase [Helicobacter pylori 51] Length = 656 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 233/701 (33%), Positives = 367/701 (52%), Gaps = 68/701 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P+ ++ N P K+G S Sbjct: 18 LSHH---YYNLDDPIVSDALYDELYQELKAYEEKNPNGIQA---NSPTQKVGAITTNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K +H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNSHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++Q++LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHALIREREGFFALLDGMVIVVNELNIQRELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEP+ I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPIEIAGAMITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LA+Y L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + I + ++ SS +K +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDIAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++++ Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKHLKEFD 656 >gi|297379814|gb|ADI34701.1| DNA ligase, NAD-dependent [Helicobacter pylori v225d] Length = 656 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 234/701 (33%), Positives = 364/701 (51%), Gaps = 68/701 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P+ S N P K+G S Sbjct: 18 LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGATTPNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVSATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G + +++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMVRSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + + ++ SS +K +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDMAKEKQESSSVFNHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 S KTD +IVG+N GSKL A++ GV ++NEE+ L L++++ Sbjct: 616 SAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656 >gi|218260659|ref|ZP_03475861.1| hypothetical protein PRABACTJOHN_01525 [Parabacteroides johnsonii DSM 18315] gi|218224427|gb|EEC97077.1| hypothetical protein PRABACTJOHN_01525 [Parabacteroides johnsonii DSM 18315] Length = 606 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 219/652 (33%), Positives = 344/652 (52%), Gaps = 55/652 (8%) Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDG 136 +G +++ +V H P LSL ++ ++++ F RI R D N F E K DG Sbjct: 1 MGSDLSKEFEQVVHKYPMLSLGNTYSEDEVKDFYERIAR-----DLNEPFEIVAELKYDG 55 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 T I++ YE G+ V A RGDG G+DV+A ++ I ++P +++ P E+RGE+ + Sbjct: 56 TSISLTYEDGRLVRAVTRGDGTRGDDVTANVKTIRSVPLKLMGDGYPAAFEIRGEILLPW 115 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN-FFVHGLGKTSEIFAKG 253 +F LN E +ANPRNAASG L++ NP + R L+ +F + LG+ E+ A+ Sbjct: 116 AEFDRLNKEREQQEEPLFANPRNAASGTLKQQNPAIVAARKLDAYFYYLLGE--ELPAET 173 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 ++ L+ R GF V N +R N+ I Y + R LP DG+V KV+ Q Sbjct: 174 HFDNLEAARSWGFKVPNVIRVCNSLEDIYDYIAYWDAERKNLPVATDGIVLKVNSLRQQL 233 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG A+SPRW I++KF ++A TRL + Q+GRTG +TPVA LEPV + G + A+L Sbjct: 234 NLGFTAKSPRWAIAYKFQAERAVTRLNSVSFQVGRTGAVTPVANLEPVLLAGTTVKRASL 293 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432 HN D I+GL D+ +GD+V V++ GE+IPK+V + V R F Sbjct: 294 HNADIIEGL-----------DLHLGDKVFVEKGGEIIPKIVGVDVEARGLLVGDKVRFIR 342 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + ++R AAH C C Q +++HFV+R A NI +G + ++ Sbjct: 343 SCPECGTPLMRPEGE------AAHYCPNEAGCPPQIKGKIEHFVTRRAMNI-NMGPETVE 395 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++ A I+ AD++TL+ + + + + D S NL S+ + + + ER Sbjct: 396 DLYE----AGYIKDTADLYTLE------ISDLLRLERWADKSARNLMASLEESKQVPFER 445 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 ++ LGIR VG +A+ L + S Q + LI V +G+ IA++I Sbjct: 446 VLYGLGIRFVGETVAKRLVAAFHSMDQLEQA----------SFEDLIAVDEIGERIARSI 495 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEK---NVSSEIENKKLVFTGTLQKIQRHKAQEY 669 + ++ + RN V LKE + E+ N S +++ +V +GT + R + + Sbjct: 496 IAYFADERNRNLVNR-LKEYGLRMSVAEEVLANRSEKLKGLSIVISGTFARHSRDEYKAM 554 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 + Q G S +S KTD I+ GDN G +KLEKA +LGVKI+NE++FL ++ + Sbjct: 555 IEQHGGKNSGSVSGKTDYILAGDNMGPAKLEKAAKLGVKIINEDEFLNMIAE 606 >gi|223039682|ref|ZP_03609968.1| DNA ligase, NAD-dependent [Campylobacter rectus RM3267] gi|222879065|gb|EEF14160.1| DNA ligase, NAD-dependent [Campylobacter rectus RM3267] Length = 647 Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 227/692 (32%), Positives = 358/692 (51%), Gaps = 70/692 (10%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPNGPLNKIGGEMNLSLFKVTHS 92 YY PI D EYD L + A P D++ P ++GGE++ K HS Sbjct: 19 AYYTDDAPIATDEEYDELYHKVLEFERANPGDISMF----SPTKRVGGEVSDGFVKARHS 74 Query: 93 IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152 + S+E I++ E+L ++ R D + F L+PK DG + + YE G V A Sbjct: 75 VRMWSMEDIFSFEELLAWLKR-------GDKEGLEFALQPKFDGASLNLLYENGALVRAI 127 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG +GEDV++ + I IP ++ N IE+RGEV I+KNDF +N G Sbjct: 128 TRGDGITGEDVTSNAKVIKNIPLQIAYNGR--IEIRGEVVIAKNDFDEINFARAQRGEPQ 185 Query: 213 YANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +NPRNAA+G LR+L+ +R L F G G+ + + + +M+ + GF Sbjct: 186 LSNPRNAAAGSLRQLDSAVTASRRLRFKPWGYGEQN-LGLETYSQMMDFIYSQGFEREEF 244 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + T I Y ++ + R + P+ +DGLV +V + ++LG + P++M+++KF Sbjct: 245 FKICRTAEQIEEAYKQLVAQRDSKPFMMDGLVVRVQSIAASEELGYTEKFPKFMVAYKFP 304 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRLLD+ Q+GR+G++TPV LEPVNI GA + +ATLHN D I+ L Sbjct: 305 AIEKTTRLLDVAFQVGRSGVVTPVGVLEPVNIDGATVKSATLHNFDEIERL--------- 355 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 ++ GD + + R+G+VIPK+ + R P P CP+C S ++ + G Sbjct: 356 --GVQKGDFISIIRSGDVIPKITGVFKQRRDGSQMPIERPRECPVCGSMLLDE-----GV 408 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 V +C L C A+ + L HF S+ NI+GLG+ ++ F++ +I ADI+ Sbjct: 409 FV---KCQ-NLECKARVINSLIHFASKKCLNIDGLGEAIVNQLFEA---GLVAKI-ADIY 460 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L + + ++ GF D + NL +I R +L FI SLGI H+G A+ +A Sbjct: 461 EL------TAQDLASLEGFKDKKIANLLGAIEASRTPALHSFIASLGIEHIGEVAAKKIA 514 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV---GDIIAQAIVEFYQ-NPRNICAVEA 627 + Y QN+ + LS V + G+ +A++ EF Q N +N+ + Sbjct: 515 QIYP--QNWRE-------------LSFGEVAAIEGFGEAMAESYAEFMQVNRQNL---DE 556 Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 +L+ VSP +E S+ I K V TGTL K R + + + GA VS +S+KTD Sbjct: 557 ILRFVSPQAQIYETKQSA-ISGKTFVITGTLSK-SRDEFKRVLEANGAKVSGSVSKKTDF 614 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ GD GSKL+KA++LGVK + E++ +++ Sbjct: 615 VLYGDEAGSKLDKARELGVKAITEDELRRMIE 646 >gi|332673586|gb|AEE70403.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 83] Length = 656 Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 236/701 (33%), Positives = 362/701 (51%), Gaps = 68/701 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P+ S N P K+G S Sbjct: 18 LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGAITPNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K +H + SL+ ++N +L+ ++ RI + + F PK+DG + + Y+ GK Sbjct: 72 KNSHLMRMWSLDDVFNQNELQAWLQRILKAYPNAS-----FVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ N E IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYN--EEIEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRN ASG LR+L + IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNTASGSLRQLG-SKITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSSIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + + ++ SS NK +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDMTKEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L+ ++ Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKGFD 656 >gi|168216777|ref|ZP_02642402.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239] gi|182381157|gb|EDT78636.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239] Length = 662 Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 221/710 (31%), Positives = 362/710 (50%), Gaps = 68/710 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74 +K + L +E++ + YY + D +YD K+ + + DL + P P Sbjct: 4 KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128 ++G + K TH SL+K +E++R++ R +F ++ + S + + Sbjct: 57 TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFVEEHNRTSDEELPPLKY 116 Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 175 HGEAIMTTEAFEKYNSE----AETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV + Sbjct: 231 EGAPFKTYMEMLNFIKVKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D + R G +R+G V V+R+ +VIP+++ +V E + Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP C + +V + H C L C Q ++ + HF R+A NI G Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +LE F++SLGI +VG + A+ L K + S +N N + L+ V VG Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENL----------ENATFEELVSVQDVG 549 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 DI+A++I+EF++ R + + LL V+P + E + S K +V TGTL+ R Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658 >gi|317181928|dbj|BAJ59712.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F57] Length = 656 Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 235/701 (33%), Positives = 365/701 (52%), Gaps = 68/701 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P+ +S N P K+G S Sbjct: 18 LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQS---NSPTQKVGAITPNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQNELQTWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VS + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVSATTRGNGLEGELVSTNAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FNSIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKICPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + + ++ SS +K +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDMAKEKQESSSVFSHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++++ Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKHLKEFD 656 >gi|186701986|ref|ZP_02554435.2| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700761|gb|EDU19043.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 673 Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 221/714 (30%), Positives = 379/714 (53%), Gaps = 64/714 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + ++ L+Q++ + YY P + D YD R + + +P + N Sbjct: 1 MDKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTN---NS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI---FFTL 130 P K+GG ++ KV H P LSL +N +DL+KF Q + S+ + + Sbjct: 58 PSVKVGGFVSEKFNKVKHKRPMLSLSNAFNDDDLKKFD-------QDNQNASVDLKGYVV 110 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI-IEVRG 189 EPKIDG I+I Y+ K A RGDG +GEDV++ I I IP + + IEVRG Sbjct: 111 EPKIDGLSISIIYKNAKLHQAITRGDGINGEDVTSNILTIKDIPHYIDQKYKDYEIEVRG 170 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EVY++ +DF +ND + +K +ANPRNAA+G LR L+ + + R L+ F++ L E Sbjct: 171 EVYMAFHDFYEMNDNLEESDKK-FANPRNAAAGTLRSLDNSIVAERKLSAFMYYLVNAQE 229 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + K YE +Q +R F V++ + + +T + +++ + +R L Y IDG+V K++ Sbjct: 230 LGIKTHYESIQFLRDNKFKVSDLIVKVDTINEVINQIDCYTKVRDKLSYMIDGIVIKINN 289 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + ++G ++ P+W I++KF S++LL+I +GRTG ++ VA+++P+ + G+++ Sbjct: 290 LEVYDEIGYTSKFPKWAIAYKFPANVVSSQLLEIINDVGRTGKISYVAKIKPILLDGSMV 349 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN D+IK +DIR+ D + + +AG+VIP V + +++R ++ P+ Sbjct: 350 EYATLHNFDFIK-----------EKDIRINDEIKIYKAGDVIPYVDGVDLSKRLANSVPY 398 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 CP CQS +VR+ + RC C +E++ +FVSR+ NIEG+ Sbjct: 399 EPIINCPSCQSVLVRENDE------VDQRCLNIYGCKKINIEKIVYFVSRNCMNIEGMSD 452 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQ---TSTTKIENILGFGDVSVTNLYDSINKR 545 ++ F+ A I+ AD++ LQ+ ++ TS KI+ + S +NL +SIN Sbjct: 453 AIINKFY----DANLIKNIADLYYLQKHKEFILTSDFKIK------EKSFSNLINSINNS 502 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + SLE + + GIRHVG +A+ +AK + + + ++ N D+ L V G Sbjct: 503 KKCSLEFLLTAFGIRHVGPNLAKKIAKQF-------KTMTALMRANFDE---LTNVDACG 552 Query: 606 DIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + A +++ ++ + N+ V L ++ + I N+ E +NK V TG+ Sbjct: 553 EKAASSLINWFNDEHNVSLVNQLQQVGVNMEYIDDFIYDDNINIIDEYKNKTFVITGSFS 612 Query: 660 KIQRHKAQEYVTQ-LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 I R + + + + A V +S+KTD ++ G G+KLEKA+ LGVKI+ E Sbjct: 613 -ISRDEIKTILEKYYHAKVKNSVSKKTDYVLAGTEAGTKLEKAKLLGVKIIENE 665 >gi|307718507|ref|YP_003874039.1| DNA ligase [Spirochaeta thermophila DSM 6192] gi|306532232|gb|ADN01766.1| DNA ligase [Spirochaeta thermophila DSM 6192] Length = 673 Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 231/721 (32%), Positives = 366/721 (50%), Gaps = 69/721 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++ ++A+KE+ L + + D YY +P + D EYD+L R + FP L R++ P Sbjct: 1 MTEQEAKKEIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFDRLKTLEAQFPHLKRADSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 ++G ++ + +V H+IP LSL+K + ++ +I + ++ + +E Sbjct: 61 T---QRVGSDLTVDFPEVAHTIPVLSLDKAYTETEVLSWIEKT----ERAAGRPLGCVIE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RG 189 KIDG + + Y G A RG+G G D++ R I IP L IPE EV RG Sbjct: 114 EKIDGVSLVLYYRGGILDRAVTRGNGRVGNDITPNARTIRQIP----LRIPETGEVVVRG 169 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 EVY+ F DE+ A PYANPRN A G+LRR N ++ R F+ G Sbjct: 170 EVYLPLQYF----DEINARMEVPYANPRNLAGGVLRRKNSAEVARVPLHFLAYDGYLP-- 223 Query: 250 FAKGQY-EMLQKMRCLGFPVNNGVRQANTFHG-------IVSYYNEMKSIRSTLPYDIDG 301 F Y E L + GFPVN R G I ++ + ++ R+TL Y IDG Sbjct: 224 FPVATYTESLDLLIEWGFPVNP--RHERIPAGTPDRAERIRAFIEKERTERATLDYQIDG 281 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 LV+KV+E ++ +LG PRW I++KF QA T L+ ID+Q+GRTG +TPVARL+PV Sbjct: 282 LVFKVNELDVRDRLGYTGHHPRWAIAYKFEAPQAVTELVRIDVQVGRTGRVTPVARLKPV 341 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G+ I+N TLHNEDY++ L+ + GD V + + G+VIP + ++ E+ Sbjct: 342 ELSGSTISNVTLHNEDYVQALELAP-----------GDLVAISKRGDVIPAIEKVV--EK 388 Query: 422 HPDAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 + + P + P CP C SR+ R AH +C A RLK FVS Sbjct: 389 NEEGVPVWRMPEHCPECSSRLERR---------GAHHFCPNRSCPAVITGRLKFFVSPKQ 439 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I LG + +DF + + RIP D++T R ++ + GFG+ + + Sbjct: 440 MDIRVLGNETIDFLVEK---GYIRRIP-DLYTFDYR------RLLDEPGFGEKKINLIVQ 489 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 I + + + +LGI VG + +L + ++ + EI + D +L R Sbjct: 490 GIEESKRRPFSTVLVALGIPDVGPSVVETLIRGGITGIDRLLEIA-----DRGDVDALTR 544 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + +G+ A+ ++E ++P +E L K +S R E E + TG+ + Sbjct: 545 LEGIGEKTARQLIETLRDPEWRKEIEELRKAGLSFEEERPEAVSGGPFEGQVWCVTGSFR 604 Query: 660 KIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+E ++ LG V + +S KT ++VG+NPGSKLEKA+ LGV+++ E+QF+ +L Sbjct: 605 HFTPRSRAEELISSLGGRVVSSVSSKTTHLLVGENPGSKLEKARSLGVQLVTEDQFIEML 664 Query: 719 Q 719 + Sbjct: 665 K 665 >gi|170781460|ref|YP_001709792.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp. sepedonicus] gi|190359244|sp|B0RGA7|DNLJ_CLAMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169156028|emb|CAQ01163.1| DNA ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 847 Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 238/788 (30%), Positives = 375/788 (47%), Gaps = 105/788 (13%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E A + L EI H D YY + + D+EYDAL+R AI A P L RS+D Sbjct: 23 LEAASARVDELRAEIERHRDAYYGETGGTVSDAEYDALERELRAIEDAHPTL-RSQD--S 79 Query: 74 PLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +GG +LF VTH+ LSL+ +++ E+L ++ ++ R + + E Sbjct: 80 PTQTVGGRAETTLFAPVTHAERMLSLDNVFSEEELAEWAAKVER---DAGRGRVRYLSEL 136 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 KIDG I +RYE G V AA RGDG GEDV+ + + T+P R+ P ++EVRGE+ Sbjct: 137 KIDGLAINLRYEHGVLVTAATRGDGVVGEDVTQNVLTMGTVPERLAGSGHPPLVEVRGEI 196 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL----NPTDIT------RYLNFFVH 241 + +F LN + VG + +ANPRNAA+G LR+ +P + R L VH Sbjct: 197 FFPVAEFDELNARQLEVGERVFANPRNAAAGSLRQKEEGKSPARLELMHARIRRLRMLVH 256 Query: 242 GLGK------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 G+G + Q E+ + G P++ R + + + + R+ + Sbjct: 257 GIGAWPVRELERDAHVSAQSEVYGLLEAWGLPISTHFRVFDDIAEVAGFVRRQGADRAAV 316 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 + IDG+V KVD+ L ++LG +R+PRW ++K+ ++ +T LLDI + +GRTG TP Sbjct: 317 EHQIDGIVVKVDDLGLHEELGATSRAPRWATAYKYPPEEVNTTLLDIVVSVGRTGRATPF 376 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A +E V + G+ + ATLHN+ +K + + +GD V++++AG+VIP+V+ Sbjct: 377 AVMEKVEVAGSEVRQATLHNQQVVK-----------AKGVLIGDTVVLRKAGDVIPEVLG 425 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKH 474 +V R F P+ CP CQ+ L P K G + RC +C AQ R++H Sbjct: 426 PVVELRTGKEHEFVMPTLCPECQT----PLKPAKEGDI--DLRCPNARSCPAQVRGRVEH 479 Query: 475 FVSRDAFNIEGLGK---QQLDFFFKSEDPAFSIRIPADIFTLQ-----------RRQQTS 520 SR A +IEGLG+ L + EDP A +F L R +T Sbjct: 480 VASRGALDIEGLGEVAAAALTQPLEPEDPPLETE--AGLFELTMADLVPITVVVRDAETG 537 Query: 521 TTKIENILG-------------------------FGD------VSVTNLYDSINKRRNIS 549 K++ G +GD S L +++ K + Sbjct: 538 MVKVDEKTGEAKRVTPFRRKRVLKRDGAFDPAEPWGDEASVPSKSAEVLLENLEKAKTQD 597 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG AR+LA ++ S ++ I A + ++ L V VG IIA Sbjct: 598 LWRILVALSIRHVGPVAARALAGWFGS-------LDVIRAASREE---LAAVDGVGGIIA 647 Query: 610 QAIVEFYQNP--RNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQR 663 A++++++ R I A V+ G + +V TG+L+ R Sbjct: 648 DALLDWFEVDWHREIVARWEKAGVVTAVPGHPGPGAAAAAGGVLAGLAVVATGSLEGYTR 707 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 A E + G + +S+KT + G GSKL KA+ LGV+I++ +F L++Q Sbjct: 708 EGALEAIMAAGGKAGSSVSKKTHYVAAGPGAGSKLGKAEALGVRIIDAAEFRLLVEQGPD 767 Query: 724 TLRIHDDD 731 + + + D Sbjct: 768 AIALPEAD 775 >gi|308182775|ref|YP_003926902.1| NAD-dependent DNA ligase LigA [Helicobacter pylori PeCan4] gi|308064960|gb|ADO06852.1| NAD-dependent DNA ligase LigA [Helicobacter pylori PeCan4] Length = 656 Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 233/701 (33%), Positives = 362/701 (51%), Gaps = 68/701 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY + I+ D+ YD L + A P+ S N P K+G S Sbjct: 18 LSHH---YYNLDESIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGATTTNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E +QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELGIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEP+ I GA++T ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVTKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEVEFLEM---EGFGAEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + ++ SS +K +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDMTEEKQESSSVFNHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++++ Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD 656 >gi|188527537|ref|YP_001910224.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Shi470] gi|254781347|sp|B2UTL2|DNLJ_HELPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188143777|gb|ACD48194.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Shi470] Length = 656 Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 235/701 (33%), Positives = 363/701 (51%), Gaps = 68/701 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY I+ D+ YD L + A P+ S N P K+G S Sbjct: 18 LSHH---YYNLDDSIVSDAVYDELYQELKAYEGKNPN---SIQANSPTQKVGATTPNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFISFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ I Q+GR+G +TPVA LEPV I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGIINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LA+Y L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + ++ SS NK +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDMAEEKQESSSVFSNKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 S KTD +IVG+N GSKL A++ GV ++NEE+ L L++++ Sbjct: 616 SAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656 >gi|237738042|ref|ZP_04568523.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817] gi|229419922|gb|EEO34969.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817] Length = 663 Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 223/702 (31%), Positives = 373/702 (53%), Gaps = 56/702 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG-EM 82 + ++I + D YY ++ +I D E+D L + +P+ ++ N P +G + Sbjct: 1 MREKIKKYSDYYYTNNESLISDVEFDKLLVELKELEEKYPEY---KEKNSPTEIVGATSL 57 Query: 83 NLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 + F KV H P LSL +N D+ FI R+ + ++ ++ + LE K+DG ++I Sbjct: 58 KETKFQKVAHKKPMLSLSNSYNEGDISDFIERVKKLLP--EEKNLAYALELKLDGLSLSI 115 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 +YE+GK V A RGDG GEDV+ I I +IP++L + IE+RGEV + + F L Sbjct: 116 QYEEGKLVRAVTRGDGTVGEDVTENILEIESIPKILKEKVS--IEIRGEVVLPLSKFEEL 173 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQK 260 N + + G + +ANPRNAA+G LR+L+ + I R L+ + + L K E ++ Sbjct: 174 NKKRMENGEEVFANPRNAAAGTLRQLDSSIIKERGLDAYFYFLVDAQNYGVKTHSESIEY 233 Query: 261 MRCLGFP---VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 + LG V ++ ++ + Y+ E R +L Y+ DG+V KVD L +LG Sbjct: 234 LAKLGIKTTGVCEVLKNSSELISRIEYWGEK---RESLDYETDGMVIKVDNIELWDKLGN 290 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +SPRW I+ KF KQ +T++L + Q+GRTG +TPVA LE V + G+ + A+LHN Sbjct: 291 TTKSPRWAIAFKFPAKQVTTKILGVTWQVGRTGKVTPVAELEEVELSGSRVKRASLHNYQ 350 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 I+ +DIR+GD V +++A E+IP+VV + R + P+ CPIC Sbjct: 351 EIE-----------RKDIRIGDSVFIEKAAEIIPQVVKAVKELRDGNEIIIKEPTHCPIC 399 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 ++V R+ G++ RC ++C + L +FVSRDA NI G G + ++ + Sbjct: 400 NTKVERE----EGQV--DIRCP-NISCPGKIEGELIYFVSRDAMNIAGFGSKIVENMLR- 451 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 F I+ DI+ L+ ++ ++E + G SV NL +I + + + +L Sbjct: 452 --LGF-IKNIVDIYELKNHRE----ELEKLEKMGKKSVDNLLTAIENSKTREYSKVLCAL 504 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 GI VG A+ LA + + I+ +++ + ++ L+ + +GD +AQAI +F++ Sbjct: 505 GIPFVGKTSAKLLA-------DSSGNIDKLMSMSVEE---LMEIEGIGDKMAQAIFDFFR 554 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + +E L I ++ + +E K +FTGTLQ R++ +E + +LG Sbjct: 555 DEEKKKLIEGLKAHGLTFIQERKEELPAEEKVFTGKTFLFTGTLQNFTRNEIKEEIEKLG 614 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFL 715 + +S+ D +IVG+ GSKL+KAQ+LG VKI+ EE+F+ Sbjct: 615 GKNLSAVSKNLDYLIVGEKAGSKLKKAQELGTVKIITEEEFM 656 >gi|182625562|ref|ZP_02953333.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721] gi|177909250|gb|EDT71715.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721] Length = 662 Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 220/710 (30%), Positives = 362/710 (50%), Gaps = 68/710 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74 +K + L +E++ + YY + D +YD K+ + + DL + P P Sbjct: 4 KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128 ++G + K TH SL+K +E++R++ R +F ++ + S + + Sbjct: 57 TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 116 Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 175 HGEAIMTTEAFEKYNSE----AETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV + Sbjct: 231 EGAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D + R G +R+G V V+R+ +VIP+++ +V E + Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP C + +V + H C L C Q ++ + HF R+A NI G Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +LE F++SLGI +VG + A+ L K + S +N + + L+ V VG Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 DI+A++I+EF++ R + + LL V+P + E + S K +V TGTL+ R Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658 >gi|224372650|ref|YP_002607022.1| NAD-dependent DNA ligase LigA [Nautilia profundicola AmH] gi|254781379|sp|B9L8R4|DNLJ_NAUPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|223589900|gb|ACM93636.1| DNA ligase, NAD-dependent [Nautilia profundicola AmH] Length = 656 Score = 327 bits (837), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 215/707 (30%), Positives = 363/707 (51%), Gaps = 65/707 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + +L++ Y YY P++ D EYD L + PD DP P + Sbjct: 9 KKAVDTLKKWAYY----YYVLDNPLVTDEEYDKLYHEVEEYEKKHPDKI---DPTSPTQR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + K H S+E ++N +D ++ R+ R ++ F +EPK DG Sbjct: 62 VGDVVLEGFEKAKHLSRMWSMEDVFNEKDFLDWVGRVKRILGHEN---FSFYIEPKFDGA 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE GK + A RGDG GEDV+ + I +IP L + +IE+RGEV I K+D Sbjct: 119 SLNLIYENGKLIRAETRGDGEIGEDVTLNAKTINSIP--LEIKEKSLIEIRGEVVIKKDD 176 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+E + G +ANPRNAA+G LR+L+P R L F+ G+G S + + E Sbjct: 177 FDKLNEERLKNGEPTFANPRNAAAGSLRQLDPKITAKRPLIFYPWGVGVNSLNYERYS-E 235 Query: 257 MLQKMRCLGF--PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ + LGF P GV + Y+E +R + +DG+V K+DE Sbjct: 236 LMDYIYSLGFKEPPKRGV--CKDIPCVEKKYDEFVKLRDSFEVMLDGMVVKIDEIKYHDI 293 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG + PRWM+++KF + T + D+ +Q+GRTG+LTPVA L+PV IGG ++ ATLH Sbjct: 294 LGYTQKYPRWMVAYKFPAIEKETIIEDVIVQVGRTGVLTPVAVLKPVEIGGVIVERATLH 353 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ + DIR+GD V+V R+G+VIPK+ ++ +R D +P P+ C Sbjct: 354 NFDEIERM-----------DIRIGDHVIVIRSGDVIPKITKVLTWKRKGDEKPIPRPTHC 402 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C + V+ + G L+ +C L+C A+ + + +F S++ +IEGLG+ Sbjct: 403 PVCGAEVLDE-----GALI---KCQ-NLSCPARVVNTIIYFASKNCLDIEGLGESVAKLL 453 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 ++ ++ D+F L+ +E + F NL ++I + + RF+ Sbjct: 454 YEHG----LVKDVTDLFELK------VEDLEKLPLFARKKAENLVNAIKSKVGVECWRFV 503 Query: 555 FSLGIRHVGAEIARSLA-KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +LGI H+G ++ + K+ + + A E I + + ++I Sbjct: 504 NALGIEHIGEVASKKICEKFGVEFYKHAPEEFEEIEGFGPE-------------MVKSIA 550 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 E+ + N +E L++ + P ++ + K +V TGT+ K R + ++ + + Sbjct: 551 EYIR--VNKEKIEKLIEILKPKNPEKKEVQKTPFTGKTVVLTGTMSK-PRSEIKKMLEDM 607 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GA VS+ +S+KTD +I G++ GSK +KA++LGV +++E+ +L++ Sbjct: 608 GAKVSSSVSKKTDFVIYGEDAGSKYDKAKKLGVNLLSEDDMWKMLKE 654 >gi|317012429|gb|ADU83037.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Lithuania75] Length = 656 Score = 327 bits (837), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 230/699 (32%), Positives = 360/699 (51%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY +PI+ D+ YD L + A P+ ++ N P K+G S Sbjct: 18 LSHH---YYNLDEPIVSDAIYDELYQELKAYEEKNPNDIQA---NSPTQKVGATTTNSFS 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQNELQAWLQRILKAYPNAS-----FVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ + IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHFIAYDGE--IEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E +QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELDIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+I ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAIINRATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKVERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ + I Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK----LIV 458 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 459 NALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LA+Y L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + ++ SS NK +V TGTL K ++ AQ + LGA +++ + Sbjct: 557 IRSLFELLNPKNSDMAEEKQESSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKIASSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KTD +I G+NPGSKL AQ+ GV ++NEE+ L L++ Sbjct: 616 STKTDFLIAGENPGSKLSLAQKHGVSVLNEEELLKHLKE 654 >gi|172040410|ref|YP_001800124.1| NAD-dependent DNA ligase LigA [Corynebacterium urealyticum DSM 7109] gi|254781300|sp|B1VG01|DNLJ_CORU7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171851714|emb|CAQ04690.1| DNA ligase [Corynebacterium urealyticum DSM 7109] Length = 712 Score = 327 bits (837), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 225/731 (30%), Positives = 355/731 (48%), Gaps = 73/731 (9%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++ + ++ SL ++ +H + YY Y P I D+E+DAL R ++ P+ P Sbjct: 22 ALAELAQQWQSLADQVRHHREVYY-YGNPEISDAEFDALLTRLQEFENSHPEAVTGPSPT 80 Query: 73 GPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + E S F+ V H P LSL+ +++ E L ++ R + + E Sbjct: 81 TEVAPSPPES--SPFRNVDHQEPMLSLDNVFDTEQLSSWLDRT---------PAKTYLTE 129 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEV 187 KIDG I + Y G A RGDG +GED++ R + IP L +PEI+E+ Sbjct: 130 LKIDGASINLLYRNGVLELALTRGDGTTGEDITHNARTLSDIPARLQPSEDFPVPEIVEI 189 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKT 246 RGEV+I DF +N + A G+K +ANPRNAA+G +R+ +P + R L HG+G Sbjct: 190 RGEVFIRVEDFAKMNAQRQAEGQKMFANPRNAAAGAMRQKDPAETARRPLRLICHGIGAR 249 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 Q+ + + G PV+ +Q ++ ++ R +++DGLV KV Sbjct: 250 EGFTPASQHAAYEALAAWGLPVSPYTKQVHSAKEVLEQVAYWADHRHDADHEMDGLVIKV 309 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ Q++LG +R+PRW I++K+ ++A TRL DI + IGRTG TP A +EP + G+ Sbjct: 310 DDTESQQRLGTTSRAPRWAIAYKYPPEEARTRLHDIRLGIGRTGRATPYAVMEPKYVAGS 369 Query: 367 LITNATLHN--EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 +T ATLHN E + KG +R+GD +++++AGEVIP+V+ + + R+ Sbjct: 370 TVTMATLHNPSEAHRKG-------------VRLGDEIMIRKAGEVIPEVLGPVEDARNGA 416 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + F F S CP C + L P G A RC C Q RL + R AF+I+ Sbjct: 417 EREFLFSSLCPECGT----PLAPARGD-DADWRCPNTRYCPGQLHTRLTYIAGRGAFDID 471 Query: 485 GLG-KQQLDFFFKSEDPAFSIRIPADIFTLQ----RRQQTSTTKIENILGFGDVSVTNLY 539 LG K D P + +F+L RR TTK + G+ +T L Sbjct: 472 ALGEKAAYDLIHSGVLPDET-----GLFSLTEEDLRRTDAYTTKSGALNKQGETLLTTLA 526 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE----------INNIIA 589 + + + L R I +L IRHVG A++LA +Y S + A + IIA Sbjct: 527 AA----KEVDLWRVIVALSIRHVGPTAAKALANHYGSIPDVAAADVETMSTVDGVGPIIA 582 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649 + DW ++ + D A A V Q+ + +A G + ++ + Sbjct: 583 ESVRDWFAVSWHQEIVDAWAAAGVRMEQDVTEQPSADA--------AGSIQADL---LAG 631 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 +V TGTL+ R A+E + G + +S+KTD ++ G GSKL KA++LG+ ++ Sbjct: 632 LSIVVTGTLEDFDRSSAKEAIESRGGKATGSVSKKTDYLVAGAKAGSKLTKAEELGIPVL 691 Query: 710 NEEQFLFLLQQ 720 +E F LL + Sbjct: 692 DEAGFHKLLSE 702 >gi|255658313|ref|ZP_05403722.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544] gi|260849632|gb|EEX69639.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544] Length = 675 Score = 327 bits (837), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 222/711 (31%), Positives = 359/711 (50%), Gaps = 49/711 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 SI+Q +KEL+ L + I YH++ YY P I D EYD L R AI +P+L N Sbjct: 9 SIQQVKKELTELRKTIRYHNNRYYNEDNPEISDYEYDQLMLRLKAIEAKYPELITK---N 65 Query: 73 GPLNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +GG+ + V H +P LSL+ +++ E++ F+ + + + + F +E Sbjct: 66 SPTQVVGGQARRTAGVLVKHDVPMLSLQDVFSKEEIFAFVEELQQELEAPE-----FVVE 120 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDG-HSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 KIDG + +RYE G+ V A RGDG GEDV+ + I + + L +P E+RGE Sbjct: 121 EKIDGLSMALRYEDGELVRAITRGDGIVQGEDVTENAKVIHDVKKKLKDKLP-YFEIRGE 179 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 VY+ K F A+N +G KP+ANPRN A+G LR+L+ + IT R+L+ F+ L Sbjct: 180 VYMEKKAFDAVNARQELLGLKPFANPRNCAAGTLRQLD-SRITKERHLSLFIFNLQTARG 238 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E M+ G V +G + +T + + R LPYDIDG V K++ Sbjct: 239 RTFTTHTEAYDFMKKQGIKVIHGYKVCHTADEVWQAITAIGENRGNLPYDIDGAVVKLNN 298 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + +++LG A+ PRW I++K+ ++ T + I++ +GRTG +TP A +P+ + G + Sbjct: 299 LADREKLGATAKVPRWAIAYKYPPEEKETVIRKIELSVGRTGRITPTAVFDPIRLCGTTV 358 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN+D+I L D+R+GD V V ++GE+IPKV +++ +R +PF Sbjct: 359 ERATLHNQDFIDNL-----------DVRIGDTVRVYKSGEIIPKVKEVVKEKRPAGTEPF 407 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + CP+C + VR+ P T + +C +C AQ + +FV R A +I+GLG+ Sbjct: 408 VIGTTCPVCGAPAVRE--PDTSDI----KCKNP-SCPAQLESHILNFVGRSAMDIKGLGE 460 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + F I AD++ L +++ K I+G + + + +I + Sbjct: 461 AAIHRLIED---GFIATI-ADLYRLGGKREELIEK--GIIG-KEKNTDKVLAAIEASKEN 513 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +R + LGI +G AR L ++ S A+ I D +G+I Sbjct: 514 EPQRLLTGLGIPGIGRTAARELMLHFGSIDALAKASEEEILEVRD----------MGEIS 563 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+AIV+++ +P + + A V + K V TGTL + R A Sbjct: 564 AKAIVQYFNDPASQKILAAFRAAGVNFTLEDTGLVDEKFAGKTFVITGTLPSLSRKDAAA 623 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G V+ +S+KTD ++ G+ GSKL+KA LG+ I++E LL+ Sbjct: 624 LIESHGGRVAGSVSKKTDYLVAGEAAGSKLQKATDLGITILDEAGLQALLE 674 >gi|168205087|ref|ZP_02631092.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987] gi|170663244|gb|EDT15927.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987] Length = 662 Score = 327 bits (837), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 220/710 (30%), Positives = 362/710 (50%), Gaps = 68/710 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74 +K + L +E++ + YY + D +YD K+ + + DL + P P Sbjct: 4 KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128 ++G + K TH SL+K +E++R++ R +F ++ + S + + Sbjct: 57 TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 116 Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 175 HGEAIMTTEAFEKYNSE----AETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV + Sbjct: 231 EGAPFKTYMEMLNFIKVKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D + R G +R+G V V+R+ +VIP+++ +V E + Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP C + +V + H C L C Q ++ + HF R+A NI G Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +LE F++SLGI +VG + A+ L K + S +N + + L+ V VG Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 DI+A++I+EF++ R + + LL V+P + E + S K +V TGTL+ R Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658 >gi|256824829|ref|YP_003148789.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547] gi|256688222|gb|ACV06024.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547] Length = 770 Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 224/760 (29%), Positives = 367/760 (48%), Gaps = 81/760 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E R + L + + H YY +P I D+++DAL R + + P L P P Sbjct: 37 EGVRHQWDDLARRVREHRFAYY-LGRPTISDADFDALFRELEQLESEHPGL---RTPESP 92 Query: 75 LNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++G + + F V H+ LSL+ +++ E+L + R D + + E K Sbjct: 93 TQEVGAPVFETGFDAVDHAERMLSLDNVFSSEELAAWFQRARDAAGTTD---LHYLCELK 149 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------------SLNI 181 IDG + + YE G V AA RGDG +GED++ +R I +P L ++++ Sbjct: 150 IDGLAVNLTYEDGVLVRAATRGDGRTGEDITLNVRTIQGVPHRLERPADLADDATATVDV 209 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFV 240 P ++EVRGEV++ F LN + G+ +ANPRNAA+G LR+ +P +R L V Sbjct: 210 PPLVEVRGEVFLPLEKFAELNARQVEAGKAAFANPRNAAAGSLRQKDPRVTASRPLRMIV 269 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 HG+G Q E + + G PV + + +T I Y R +++D Sbjct: 270 HGIGAREGFDIARQSEAYEVLAGWGLPVTSHAKVLDTLEEIEQYVAYWGGHREGAEHELD 329 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K+DE ++Q+QLG +R+PRW I+ K+ ++ +T+LLDI + +GRTG +TP +EP Sbjct: 330 GIVIKIDEVTVQRQLGSTSRAPRWAIAWKYPPQEVTTKLLDIAVNVGRTGRVTPFGVMEP 389 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G+ ++ ATLHN + +V R G + +GD V++++AG+VIP+++ + + Sbjct: 390 VTVAGSTVSMATLHN---------AHEVQRKG--VLIGDTVVLRKAGDVIPEILGPVADL 438 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R F P+ CP C + +L P K G RC +C +Q ERL R Sbjct: 439 RDGSETAFVMPTHCPSCGT----ELAPAKEGD--KDIRCPNSRSCPSQLRERLFGLAGRG 492 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT----------------- 522 AF+IE LG + A + A +F L T+ Sbjct: 493 AFDIESLGWEGAGALLD----AGVLTDEAGVFDLTAEDLLRTSLYTRAAKKAEAAAAEEG 548 Query: 523 KIENILGFGDV--------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 E +L G V L D++ + + L R + +L IRHVG AR+LA ++ Sbjct: 549 DPEGVLPPGGVVDGRVLSAVGVRLLDNLQQVKEQPLWRVLVALSIRHVGPTAARALAGHF 608 Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 + + I A + ++ L V VG IA+A+ E++ N + + + Sbjct: 609 AT-------MEAIRAASTEE---LAAVEGVGPTIAEAVTEWFGGEGNGWHRQIVDTWAAA 658 Query: 635 SI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + ++++ +E +V TG+L+ R +++E + G S +S+KTD ++VG Sbjct: 659 GVRMADERDESIERTLEGLTVVVTGSLEGWSRDESKEAILTRGGKASGSVSKKTDYVVVG 718 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDDD 731 N GSK KA++LG+ I++EEQF LL +DD Sbjct: 719 ANAGSKATKAEELGLPILSEEQFGELLATGRVEGVTPEDD 758 >gi|308061946|gb|ADO03834.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Cuz20] Length = 656 Score = 326 bits (836), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 232/701 (33%), Positives = 364/701 (51%), Gaps = 68/701 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY I+ D+ YD L + A P+ S N P K+G S Sbjct: 18 LSHH---YYNLDDSIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGATTPNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVSANAKHIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFPSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA++T ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAMVTKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LA+Y L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + + ++ SS +K +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDMAKEKQESSSVFNHKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 S KTD +IVG+N GSKL A++ GV ++NEE+ L L++++ Sbjct: 616 SAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD 656 >gi|237742800|ref|ZP_04573281.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13] gi|229430448|gb|EEO40660.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13] Length = 696 Score = 326 bits (836), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 224/721 (31%), Positives = 380/721 (52%), Gaps = 64/721 (8%) Query: 19 KELSSLEQEISYHDD------CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +EL+ LE+ + +D YY + +I D E+D L + +++ +P + ++ + Sbjct: 23 QELNDLEKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYP---QYKEIS 79 Query: 73 GPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +G + + FK V H+ P LSL +NI ++ FI RI + K + + + LE Sbjct: 80 SPTTSVGASLKENKFKKVEHTHPMLSLANSYNIGEIVDFIERIKKKIPK--EQELKYCLE 137 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG I++ Y +GK V A RGDG GEDV+ I I +I + L I +E+RGEV Sbjct: 138 VKLDGLSISLTYRQGKLVRAVTRGDGLIGEDVTENILEIASIIKTLPQAID--MEIRGEV 195 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 + F LN+E + G + +ANPRNAASG LR+L+ + R L+ + + L + ++ Sbjct: 196 VLPLASFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFLVEADKLG 255 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K E ++ + +G T I N + R LPY+ DGLV KVDE Sbjct: 256 LKSHSESIKFLESMGIKTTGIFELLETSKEIEMRINYWEKERENLPYETDGLVIKVDEIH 315 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L ++G +++PRW I++KF Q ST L D+ Q+GRTG LTPVA + V + G+ + Sbjct: 316 LWDEIGYTSKAPRWAIAYKFPALQISTVLNDVAWQVGRTGKLTPVALFKEVELAGSKVER 375 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN I+ +DIR+GDRV +K+A E+IP+VV I +R + + Sbjct: 376 ASLHNISEIQ-----------KKDIRIGDRVFIKKAAEIIPQVVKAIKEDRTGNEKIIKE 424 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C ++ R+ + +C C + +++FVS+DA NI GLG + Sbjct: 425 PTHCPVCNHKLEREEG------LVDIKCVNE-ECPGKNQAEIEYFVSKDALNIMGLGSKI 477 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F D + I+ DIF L+ ++ +ENI G+ S+ NL +SI + +N Sbjct: 478 VEKFI---DLGY-IKTVVDIFDLKNHKED----LENIDKMGERSIENLLNSIEESKNRDY 529 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++ I SLG+ +G +++LAK ++ I+ ++ + ++ L + +G A Sbjct: 530 DKVICSLGMPLIGKVASKALAKA-------SKNIDKLMTMSFEE---LTSIDGIGKKAAN 579 Query: 611 AIVEFYQNPRNICAVEAL--------LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 I+ F+ +N ++ L +KE ++ +N++ K +FTGTL+ Sbjct: 580 EIIAFFTKEKNQKIIQGLKEKGLKFEIKESETNV----QNINPNFAGKNFLFTGTLKHFT 635 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQY 721 R + +E + +LG + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L ++ Sbjct: 636 REQIKEEIEKLGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDKF 695 Query: 722 N 722 + Sbjct: 696 D 696 >gi|166215590|sp|Q8XI62|DNLJ_CLOPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 662 Score = 326 bits (836), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 220/710 (30%), Positives = 361/710 (50%), Gaps = 68/710 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74 +K + L +E++ + YY + D +YD K+ + + DL + P P Sbjct: 4 KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128 ++G + K TH SL+K +E++R++ R +F ++ + S + + Sbjct: 57 TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 116 Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 175 HGEAIMTTEAFEKYNSE----AETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV + Sbjct: 231 EGAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ + LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 291 DDIRTRDLLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D + R G +R+G V V+R+ +VIP+++ +V E + Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP C + +V + H C L C Q ++ + HF R+A NI G Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +LE F++SLGI +VG + A+ L K + S +N + + L+ V VG Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 DI+A++I+EF++ R + + LL V+P + E + S K +V TGTL+ R Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658 >gi|110801053|ref|YP_696931.1| NAD-dependent DNA ligase LigA [Clostridium perfringens ATCC 13124] gi|123049624|sp|Q0TN59|DNLJ_CLOP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110675700|gb|ABG84687.1| DNA ligase, NAD-dependent [Clostridium perfringens ATCC 13124] Length = 662 Score = 326 bits (836), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 220/710 (30%), Positives = 362/710 (50%), Gaps = 68/710 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74 +K + L +E++ + YY + D +YD K+ + + DL + P P Sbjct: 4 KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128 ++G + K TH SL+K +E++R++ R +F ++ + S + + Sbjct: 57 TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 116 Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 175 HGEAIMTTEAFEKYNSE----ADTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV + Sbjct: 231 EGAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D + R G +R+G V V+R+ +VIP+++ +V E + Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP C + +V + H C L C Q ++ + HF R+A NI G Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +LE F++SLGI +VG + A+ L K + S +N + + L+ V VG Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 DI+A++I+EF++ R + + LL V+P + E + S K +V TGTL+ R Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658 >gi|18311241|ref|NP_563175.1| NAD-dependent DNA ligase LigA [Clostridium perfringens str. 13] gi|18145924|dbj|BAB81965.1| DNA ligase [Clostridium perfringens str. 13] Length = 665 Score = 326 bits (836), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 220/710 (30%), Positives = 361/710 (50%), Gaps = 68/710 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74 +K + L +E++ + YY + D +YD K+ + + DL + P P Sbjct: 7 KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128 ++G + K TH SL+K +E++R++ R +F ++ + S + + Sbjct: 60 TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 119 Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 120 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 177 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 178 HGEAIMTTEAFEKYNSE----AETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 233 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV + Sbjct: 234 EGAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 293 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ + LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 294 DDIRTRDLLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 353 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D + R G +R+G V V+R+ +VIP+++ +V E + Sbjct: 354 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 401 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP C + +V + H C L C Q ++ + HF R+A NI G Sbjct: 402 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 452 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K Sbjct: 453 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 502 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +LE F++SLGI +VG + A+ L K + S +N + + L+ V VG Sbjct: 503 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 552 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 DI+A++I+EF++ R + + LL V+P + E + S K +V TGTL+ R Sbjct: 553 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 611 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F Sbjct: 612 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 661 >gi|207092489|ref|ZP_03240276.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_AG0C1] Length = 656 Score = 326 bits (835), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 232/699 (33%), Positives = 361/699 (51%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P+ S N P K+G S Sbjct: 18 LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGAITTNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE V+ + I IP ++ N E IE+RGEV ISK DF ALN E + Sbjct: 127 LVSATTRGNGLEGELVTNNAKHIANIPHSIAYN--EEIEIRGEVIISKKDFDALNQERLD 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SNITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E +QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELGIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEP+ I GA++T ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVTKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LA+Y L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + ++ SS NK +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDMTEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQT-LENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KTD +I G+NPGSKL A++ GV ++NEE+ L L++ Sbjct: 616 SAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKE 654 >gi|15611625|ref|NP_223276.1| NAD-dependent DNA ligase LigA [Helicobacter pylori J99] gi|7674020|sp|Q9ZLM1|DNLJ_HELPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|4155109|gb|AAD06141.1| DNA LIGASE [Helicobacter pylori J99] Length = 656 Score = 326 bits (835), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 230/699 (32%), Positives = 358/699 (51%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY +PI+ D+ YD L + A P+ ++ N P K+G Sbjct: 18 LSHH---YYNLDEPIVSDAVYDELYQELKAYEEENPNRIQA---NSPTQKVGATATNEFS 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +LR ++ RI + + F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQNELRAWLQRILKVYPNAS-----FVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 + A RG+G GE V+ + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LISATTRGNGLEGELVTNNAKHIANIPHSIAYNGE--IEIRGEVIISKEDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SNITKKRKLQFIPWGVGKHSLHFLRFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V VDE +QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVDELDIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA++ ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVNRATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R Q P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQQKIMRPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G +A ++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMAHSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL S ++ SS +K +V TGTL K ++ AQ + LGA +++ + Sbjct: 557 IRSLFELLNPKSSDTAEEKQKSSSVFSDKTIVLTGTLSKPRQEYAQ-MLENLGAKIASSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KTD +I G+N GSKL AQ+ GV ++NEE+ L L++ Sbjct: 616 SAKTDFLIAGENAGSKLALAQKHGVSVLNEEELLKRLKE 654 >gi|168213168|ref|ZP_02638793.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969] gi|170715278|gb|EDT27460.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969] Length = 662 Score = 326 bits (835), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 220/710 (30%), Positives = 362/710 (50%), Gaps = 68/710 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74 +K + L +E++ + YY + D +YD K+ + + DL + P P Sbjct: 4 KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128 ++G + K TH SL+K +E++R++ R +F ++ + S + + Sbjct: 57 TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNIKFLEEYNRTSDEELPPLKY 116 Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 175 HGEAIMTTEAFEKYNSE----AETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV + Sbjct: 231 EGAPFKTYMEMLNFIKTKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D + R G +R+G V V+R+ +VIP+++ +V E + Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP C + +V + H C L C Q ++ + HF R+A NI G Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +LE F++SLGI +VG + A+ L K + S +N + + L+ V VG Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 DI+A++I+EF++ R + + LL V+P + E + S K +V TGTL+ R Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658 >gi|169347054|ref|ZP_02865996.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495] gi|169296737|gb|EDS78866.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495] Length = 662 Score = 326 bits (835), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 219/710 (30%), Positives = 359/710 (50%), Gaps = 68/710 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74 +K + L +E++ + YY + D +YD + DL + P P Sbjct: 4 KKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKK-------YYELLDLEKETGYKLPYSP 56 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128 ++G + K TH SL+K +E++R++ R +F ++ + S + + Sbjct: 57 TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 116 Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 175 HGEAIMTTEAFEKYNSE----AETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV + Sbjct: 231 EGAPFKTYMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D + R G +R+G V V+R+ +VIP+++ +V E + Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP C + +V + H C L C Q ++ + HF R+A NI G Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +LE F++SLGI +VG + A+ L K + S +N + + L+ V VG Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 DI+A++I+EF++ R + + LL V+P + E + S K +V TGTL+ R Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESLFMGKTVVVTGTLENYSRT 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658 >gi|168211265|ref|ZP_02636890.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC 3626] gi|170710700|gb|EDT22882.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC 3626] Length = 662 Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 220/710 (30%), Positives = 362/710 (50%), Gaps = 68/710 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74 +K + L +E++ + YY + D +YD K+ + + DL + P P Sbjct: 4 KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128 ++G + K TH SL+K +E++R++ R +F ++ + S + + Sbjct: 57 TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 116 Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 L K DG I + Y E G V A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 117 ILTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 175 HGEAIMTTEAFEKYNSE----ADTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV + Sbjct: 231 EGAPFKTYMEMLNFIKTKGFPMDDYIRKCTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D + R G +R+G V V+R+ +VIP+++ +V E + Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP C + +V + H C L C Q ++ + HF R+A NI G Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K Sbjct: 450 FSEKTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +LE F++SLGI +VG + A+ L K + S +N + + L+ V VG Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 DI+A++I+EF++ R + + LL V+P + E + S K +V TGTL+ R Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +E + LGA VS +S+KTD +I G+ GSK +KA+ LGV I++EE+F Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEEF 658 >gi|317179023|dbj|BAJ56811.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F30] Length = 657 Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 234/699 (33%), Positives = 362/699 (51%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P+ S N P K+G S Sbjct: 18 LSHH---YYNLDDPIVSDAIYDELYQELKAYEEKNPN---SIQANSPTQKVGATTTNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVSANAKRIANIPHAIAYNGE--IEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHALIREREGFFVLLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LA+Y L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + + ++ SS +K +V TG L K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDMTKEKQKSSSVFSHKTIVLTGMLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++ Sbjct: 616 STKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKE 654 >gi|148272584|ref|YP_001222145.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166215575|sp|A5CQU5|DNLJ_CLAM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|147830514|emb|CAN01449.1| NAD-dependant DNA ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 853 Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 234/777 (30%), Positives = 377/777 (48%), Gaps = 105/777 (13%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E A + +L EI H D YY + D+EYDAL +A+ A P L RS+D Sbjct: 23 LEAASARVDALRTEIERHRDEYYGADASTLSDAEYDALVHELEALEEAHPTL-RSQD--S 79 Query: 74 PLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +GG +LF VTH+ LSL+ +++ E+L ++ ++ R + + E Sbjct: 80 PTQTVGGRAETTLFAPVTHAERMLSLDNVFSEEELAEWAAKVER---DAGSGRVRYLSEL 136 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 KIDG I +RYE G V AA RGDG GEDV+ + + T+P R++ P ++EVRGE+ Sbjct: 137 KIDGLAINLRYEHGVLVTAATRGDGVVGEDVTQNVLTMGTVPERLMGSGHPPLVEVRGEI 196 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL----NPTDIT------RYLNFFVH 241 + +F LN + VG + +ANPRNAA+G LR+ +P + R L VH Sbjct: 197 FFPVAEFDELNARQLEVGERVFANPRNAAAGSLRQKEEGKSPARLELMRARIRRLRMLVH 256 Query: 242 GLGK------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 G+G S+ Q E+ + G P++ R + + + + R+ + Sbjct: 257 GIGAWPVRELASDAHVSAQSEVYGLLAGWGLPISTHFRVFDDISEVTEFVRRHGAHRAEV 316 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 + IDG+V KVD+ L ++LG +R+PRW ++K+ ++ +T LLDI + +GRTG TP Sbjct: 317 EHQIDGIVVKVDDLGLHEELGATSRAPRWATAYKYPPEEVNTTLLDIVVSVGRTGRATPF 376 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A +E V + G+ + ATLHN+ +K + + +GD V++++AG+VIP+V+ Sbjct: 377 AVMEKVEVAGSEVRQATLHNQQVVK-----------AKGVLIGDTVVLRKAGDVIPEVLG 425 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKH 474 +V R + F P+ CP CQ+ L P K G + RC +C AQ R++H Sbjct: 426 PVVELRDGTEREFVMPTLCPECQT----PLRPAKEGDI--DLRCPNARSCPAQVRGRVEH 479 Query: 475 FVSRDAFNIEGLGK---QQLDFFFKSEDPAFSIRIPADIFTLQ-----------RRQQTS 520 SR A +IEGLG+ L + EDP A +F L R +T Sbjct: 480 VASRGALDIEGLGEVAAAALTQPLEPEDPPLETE--AGLFELTMADLVPITVVVRDAETG 537 Query: 521 TTKIENILG-------------------------FGD------VSVTNLYDSINKRRNIS 549 K++ G +GD S L ++++K + Sbjct: 538 MVKVDEKTGEAKRVTPFRRRRAPKRDGVFDPAAPWGDEDSVPSKSAEVLLENLDKAKTQD 597 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IRHVG AR+LA ++ S ++ I + + ++ L V VG IIA Sbjct: 598 LWRILVALSIRHVGPVAARALAGWFGS-------LDAIRSASREE---LAAVDGVGGIIA 647 Query: 610 QAIVEFYQNPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENK-KLVFTGTLQKIQR 663 A++++++ + V+ ++ EV G + + +V TG+L+ R Sbjct: 648 DALLDWFEVDWHREIVDRWRKAGVVMEVPGHPGPGAAAAAGGVLAGLTVVATGSLEGYTR 707 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A E + G + +S+KT + G GSKL KA+ LGV+I++ +F L++Q Sbjct: 708 EGALEAIMAAGGKAGSSVSKKTHYVAAGPGAGSKLGKAEALGVRIIDAAEFRLLVEQ 764 >gi|26553637|ref|NP_757571.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2] gi|81748016|sp|Q8EWL9|DNLJ_MYCPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|26453643|dbj|BAC43975.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2] Length = 701 Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 220/720 (30%), Positives = 377/720 (52%), Gaps = 78/720 (10%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + +L + ++ ++ YY P + D EYD + + +P+ + PN P K+GG Sbjct: 26 IQNLRKNLNQYNYEYYGLENPSVSDYEYDMCLKELIQLETQYPEF---DSPNSPSKKVGG 82 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 ++ KV H IP +SL ++ EDL KF I + D + +EPKIDG I+ Sbjct: 83 YISEKFNKVKHEIPMMSLSNAFDEEDLLKFDNDIKKAIGSSD---FSYVVEPKIDGLSIS 139 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 ++Y+ G + A RGDG GEDV+ I+ I ++P L++ + +E+RGEV+++K DF Sbjct: 140 VKYKDGNLIQAVTRGDGEIGEDVTQNIKTIKSLP--LNIEYDKDLEIRGEVFLTKKDFEK 197 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEML 258 +N + K +AN RNAASG LR L+ ++IT R L+ + + K +E+ QY++L Sbjct: 198 INSDPNLT--KKFANARNAASGSLRNLD-SNITAKRNLSALFYYVPKATELKIAKQYDVL 254 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + P++ +R N G++ +E+ R YDIDG+V KV++F+ +++G Sbjct: 255 SWLDKQLIPISREIRHCNNIQGVIERISELTDTRDQFKYDIDGIVIKVNDFNHYEEIGYT 314 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++ P+W I++KF T+L ID+ +GRTG + +A L+ + + G+ + ATLHN DY Sbjct: 315 SKFPKWAIAYKFPAVVKQTKLNSIDVTVGRTGRINYIANLDEILLEGSQVKKATLHNYDY 374 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 IK +I + D V + +AGE+IPK++ I +R F P+ CP C Sbjct: 375 IK-----------DHEIMLNDIVEIYKAGEIIPKIIRSIKEKRDGSQVVFPEPTNCPSCD 423 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S++V+ K C +Q++++++F SRDA NIEGL + F+++ Sbjct: 424 SKLVK-------KEQEVDLYCLNENCVEKQIQQIEYFSSRDAMNIEGLSISIISQLFRNK 476 Query: 499 DPAFSIRIPADIFTLQRRQQT---------------STTKIENILGFGDVSVTNLYDSIN 543 I D++ L +++ + T+ E L F D S TN+ ++I Sbjct: 477 ----IINDAIDLYELAHKKEILIATKQKFYRKNDDGTKTEFERSL-FKDKSFTNIIEAIE 531 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K ++ S+E+F+ LGI++VG A++L+K + S + A I +VP Sbjct: 532 KSKSNSMEKFLTGLGIKYVGLRAAKALSKRFKSIEELAMATREEIE----------QVPD 581 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALL---KEVSPSIGRHE-------KNVSSEIENKKLV 653 G+ +++++V ++ +P+N + LL K+V + KN + NK V Sbjct: 582 TGEKMSESLVNWFSDPKN----QDLLWRAKKVGINFNYINEFNDVVVKNEHQKYMNKTFV 637 Query: 654 FTGTLQKIQRHKAQEYVTQL-GAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711 TG+ K R++ + Y+ + A VS +S+KTD ++VG+N G SKL+KA L ++I+ E Sbjct: 638 ITGSFNK-SRNEIKNYIESVFNAKVSDSVSKKTDYLVVGENAGDSKLKKANDLKIEIITE 696 >gi|84498237|ref|ZP_00997034.1| DNA ligase [Janibacter sp. HTCC2649] gi|84381737|gb|EAP97620.1| DNA ligase [Janibacter sp. HTCC2649] Length = 731 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 229/733 (31%), Positives = 373/733 (50%), Gaps = 72/733 (9%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 ++ R E + L ++ + H Y+ P + D EYD L +R + + +P L P P Sbjct: 31 DEIRHEWTDLAEQATTHQFAYHVKDSPTVSDGEYDKLMKRLNMLEDEYPSL---RTPESP 87 Query: 75 LNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL-EP 132 +GG + + F+ V H LSL+ ++ E++ ++ R+ R D S F L E Sbjct: 88 TQSVGGAVFSTDFESVDHLERMLSLDNAFSPEEMVEWNARVTR-----DAGSAFHYLCEL 142 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVR 188 KIDG I + YEKG+ A RGDG +GEDV+ +R + IP L +P+++EVR Sbjct: 143 KIDGLAINLLYEKGRLTRALTRGDGRTGEDVTLNVRTVRGIPTELKGTKKHPVPDLVEVR 202 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY F LN +++ G+ PYANPRN A+G LR+ +P +R L VHG+GK Sbjct: 203 GEVYFPIEAFGELNAQLVEAGKPPYANPRNTAAGSLRQRDPRVTASRELRMLVHGIGKRE 262 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 Q E ++ G PV+ R +T + + R + ++IDG+V KVD Sbjct: 263 GFALTRQSEAYAALQEWGMPVSTHFRVVDTIEEVNEFIVSTGEHRHDVEHEIDGVVVKVD 322 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E +Q+QLG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP ++PV + G+ Sbjct: 323 EIVVQRQLGATSRAPRWAIAYKYPPEEVNTVLLDIQVNVGRTGRVTPFGVMKPVVVAGST 382 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHN + +V R G + +GD +++++AG+VIP+++ +V+ R + Sbjct: 383 VERATLHN---------ATEVTRKG--VLIGDTIVLRKAGDVIPEILGPVVDLRDGSERA 431 Query: 428 FSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P CP C + L P K G RC +C +Q ERL R AF+IE L Sbjct: 432 FVMPVDCPSCGT----PLAPAKEGD--KDIRCPNSRSCPSQLRERLSGLAGRGAFDIEAL 485 Query: 487 GKQQLDFFFKS-----EDPAFSI------RIPADIFTLQRRQQTST-----TKIENILGF 530 G + +S E F + R+P ++T ++ S ++ + +G Sbjct: 486 GWEGSVALLESGVLTDESTLFGLTDADIARVP--LYTRAAKKTDSEDAVIDGRVPSAIG- 542 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 L ++ + L R + L IRHVG AR+LA+++ S ++ I A Sbjct: 543 -----AKLVANLESAKTQPLWRVLVGLSIRHVGPTAARALAQHFGS-------MDGIRAA 590 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 ++ L V VG IIA+++ +++ N V A++ + + R E + IE Sbjct: 591 TVEE---LSGVEGVGGIIAESVRDWFDREGNEWHV-AIVDQWAADGVRMEDERDTSIEQT 646 Query: 651 ----KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +V TG+++ R +A+E + G S +S+KTD ++VG GSK KA++LG+ Sbjct: 647 LEGLTVVVTGSMEGFTRDEAKEAILSRGGKASGSVSKKTDYVVVGPGAGSKEAKARELGL 706 Query: 707 KIMNEEQFLFLLQ 719 I++E F+ LL+ Sbjct: 707 TILDEAGFVTLLE 719 >gi|311744048|ref|ZP_07717854.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272] gi|311313178|gb|EFQ83089.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272] Length = 782 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 241/803 (30%), Positives = 382/803 (47%), Gaps = 133/803 (16%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++AR E+++L + I+ + YY ++ D+ YD R+ +A+ P+L + P Sbjct: 13 LDEARAEVTTLLERIAEAREAYYGQDASLVDDATYDGWLRQLEAVERRHPELQGQDSPT- 71 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 LN +G L V H+ LSL+ ++ ++LR + T+ + + + E K Sbjct: 72 -LN-VGAATTTDLAPVVHAERMLSLDNVFGADELRAWCTKT----TEAAGRPVRWLTEAK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 IDG +++RYE G+ V AA RGDG GEDV++ + +PR L P ++EVRGEV+ Sbjct: 126 IDGLAVSLRYEHGRLVSAATRGDGRVGEDVTSNAARLAGVPRELDGEGHPALVEVRGEVF 185 Query: 193 ISKNDFLALND-----------------------EMIAVGRKP-YANPRNAASGILRRLN 228 I+ F LN E A R P +ANPRNAA+G LR+L Sbjct: 186 IAVEAFRRLNALQADLRERVVADATARGQETGRAEASAARRFPAFANPRNAAAGGLRQLL 245 Query: 229 P--------TDITRY--LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278 + R L+ +VHG+G + Q E+ + G PV+ R + Sbjct: 246 SKKDGLELEAGLARIESLSLYVHGIGAWDDPPVAAQSEVYDLLASWGLPVSPHGRVLDGV 305 Query: 279 HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTR 338 +V E+ + R+ + ++IDG+V KVDE +L +LGE +R+PRW I++K+ ++ TR Sbjct: 306 DEVVDRIAELGTGRAAIEHEIDGVVVKVDELALHPELGETSRAPRWAIAYKYPPEEVHTR 365 Query: 339 LLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVG 398 LLDI + +GRTG TP A +EPV++ G+++ ATLHN+D ++ + + +G Sbjct: 366 LLDIVVSVGRTGRATPFAMMEPVHVAGSVVRQATLHNQDVVR-----------EKGVLIG 414 Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHR 457 D V++++AG+VIP+V+ + R F P+ CP C + L P K G + R Sbjct: 415 DTVVLRKAGDVIPEVLGPVAELRDGSEVEFVMPTRCPECDTA----LRPMKEGDI--DLR 468 Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA-FSIRIPADIFTLQ-- 514 C C AQ R++H SR A +IE LG+ + E PA +R A +F L Sbjct: 469 CPNARTCPAQVRGRVEHVGSRGALDIEALGEVTAAALTQPEVPAEPPLRTEAALFELDLA 528 Query: 515 ---------RRQQTSTTKIENIL------------------GFGDVSVT----------- 536 R +T +I+ GF D S Sbjct: 529 TLVPIEVVVRDAETGQPRIDPTTGEPVRRRPFQRVETTYPPGFEDASAAERRAAGVRKDH 588 Query: 537 ----------NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN 586 L + ++K R L RF+ +L IRHVG AR+LA+++ S + Sbjct: 589 RTILPSAQALTLLEELDKARTKELWRFLVALSIRHVGPVAARALAQHFGS-------VRA 641 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK----EVSPSIGRHEKN 642 I A D+ L V VG IA ++ ++ + VE L + V I H Sbjct: 642 IEAAGEDE---LAVVDGVGPTIAGSVKDWLTVDWH---VEILRRWEAAGVRLHIPDHPGP 695 Query: 643 VSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697 +++ E L V TG+L+ R +E + G + +S+KTD ++VG+N GSK Sbjct: 696 GAADAEPGPLSGLTIVVTGSLEGFTRDSVKEAILVRGGKAAGSVSKKTDYVVVGENAGSK 755 Query: 698 LEKAQQLGVKIMNEEQFLFLLQQ 720 EKA+QLG+ I++E F+ LL + Sbjct: 756 AEKAEQLGIPILDEAGFVELLDR 778 >gi|298736308|ref|YP_003728834.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B8] gi|298355498|emb|CBI66370.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B8] Length = 656 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 230/699 (32%), Positives = 359/699 (51%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P+ S N P K+G S Sbjct: 18 LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGAITTNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K +H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNSHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE V+ + I IP ++ + IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVTNNAKHIANIPHFIAYDGE--IEIRGEVIISKKDFDALNQERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V VDE +QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVDELDIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEP+ I GA+I ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMINRATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ + I Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK----LIV 458 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 459 NALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LA+Y L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + ++ SS NK +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KTD +I G+NPGSKL A++ GV ++NEE+ L L++ Sbjct: 616 SAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKE 654 >gi|325295048|ref|YP_004281562.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065496|gb|ADY73503.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 723 Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 228/731 (31%), Positives = 378/731 (51%), Gaps = 75/731 (10%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED- 70 LS E+A++ L + I YHD YY + P+I D +YD L HA DL + Sbjct: 32 LSTEEAKELAEKLRKVIRYHDYKYYVLASPVISDYQYDKL-------FHALEDLEKVHSE 84 Query: 71 ---PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P +I KV H SLE ++ EDL+++ ++ + +++ + Sbjct: 85 IITPDSPTQRIAPAFTGEFEKVKHLAEMTSLENTYSPEDLKEWDRKVKQLLGREE---VE 141 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP----- 182 + +EPK DG + + YE A RGDG GED++ +R I +IP L P Sbjct: 142 YIVEPKFDGASVELVYEDDLLKRAVTRGDGVIGEDITMNVRTIKSIP----LKAPFSRYG 197 Query: 183 -EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-----YL 236 +I +RGE+ + K+ F LN E G +ANPRNAA+G LR NP+++ + Y Sbjct: 198 INLISIRGEIVMPKSVFEKLNKEREKQGLPLFANPRNAAAGTLRLKNPSEVAKRGLDCYA 257 Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 ++ GK K Q E L+ + GF + ++ + + R + Sbjct: 258 YQILYSEGKRLCDDIKTQSEALKLLAHCGFKSPRIQKVCKNIDEVIETVLQAQEERESWD 317 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 ++ DG+V KV++ LGE P+W +++KF KQA T+L+D+ Q+GRTG LTPVA Sbjct: 318 FEADGMVVKVNDICAWNVLGETMHHPKWAVAYKFPAKQAVTKLVDVVWQVGRTGALTPVA 377 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 LEPV +GG +++ A+L N D+IK +DIR+ D V+V+RAGE IP +V Sbjct: 378 VLEPVEVGGVVVSRASLFNPDFIK-----------QKDIRIFDYVIVERAGETIPYIVAP 426 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 I + R + P+ CP+C++ +V++L+ A RC + C AQ E L ++ Sbjct: 427 IKDRRSGKEKLVEVPTHCPVCKAPIVKELDE------AVPRCP-NINCPAQLKEHLVYW- 478 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 +I+GLG+ + K+E ++ AD++ L + + + G+G Sbjct: 479 -GKVLDIKGLGESTANILLKNE----LVKSIADLYYLNK------FDLIKLPGWGLKKAE 527 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL I K ++ + + + +LGIRHVG + A+ LA+ + ++IN ++ N + Sbjct: 528 NLLKQIEKSKSATFWKKLTALGIRHVGEKTAQFLAQKF-------KDINELM---NASFS 577 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKK 651 L + +G I A +I F++ +NI ++ L+E R E+ + +E + Sbjct: 578 ELASIQGIGAITATSIRNFFKAKQNIEMIKR-LEETGFYFRRTEEEEKEQKLPKPLEGQN 636 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +VFTG L+ R +AQ V+ LG + +++KT ++VG+NPGSK KAQ+LG+K++NE Sbjct: 637 IVFTGELEHFTRKEAQYLVSLLGGNPTNSVTKKTSFVVVGENPGSKFAKAQKLGIKLLNE 696 Query: 712 EQFLFLLQQYN 722 E+FL L+++++ Sbjct: 697 EEFLKLIKKFS 707 >gi|260495084|ref|ZP_05815213.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33] gi|260197527|gb|EEW95045.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33] Length = 696 Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 224/722 (31%), Positives = 385/722 (53%), Gaps = 62/722 (8%) Query: 17 ARKELSSLEQEISYHDD------CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 + +EL+ LE+ + +D YY + +I D E+D L + +++ +P + ++ Sbjct: 21 SSQELNDLEKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYP---QYKE 77 Query: 71 PNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P +G + + FK V H P LSL +NI ++ FI RI + K+ + + + Sbjct: 78 ISSPTTSVGASLKENKFKKVEHIHPMLSLANSYNIGEIVDFIERIKKKISKEQE--LKYC 135 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 LE K+DG I++ Y +GK V A RGDG GEDV+ I I +I + L + +E+RG Sbjct: 136 LEVKLDGLSISLTYRQGKLVRAVTRGDGLIGEDVTENILEITSIVKTLPQAMD--MEIRG 193 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 EV + F LN+E + G + +ANPRNAASG LR+L+ + R L+ + + L + + Sbjct: 194 EVVLPLASFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFLVEADK 253 Query: 249 IFAKGQYE---MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + K E L+ MR + + + + Y+ + R LPY+ DGLV K Sbjct: 254 LGFKSHSESIKFLESMRIKTTGIFELLETSKEIEKRIDYWEKE---RENLPYETDGLVIK 310 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VDE +L ++G +++PRW I++KF Q ST L + Q+GRTG LTPVA L+ V + G Sbjct: 311 VDEINLWNEIGYTSKTPRWAIAYKFPAHQVSTVLNGVTWQVGRTGKLTPVAELQEVELSG 370 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + + A+LHN I+ +DIR+GDRV +++A E+IP+VV I +R + Sbjct: 371 SKVKRASLHNISEIQ-----------RKDIRIGDRVFIEKAAEIIPQVVKSIKEDRTGNE 419 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P CP+C ++ R+ + + +C C A+ +++FVSRDA NI G Sbjct: 420 KIIEEPVNCPVCNHKLERE------EGLVDIKCVNE-ECPAKVQGEIEYFVSRDALNIMG 472 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG + ++ F D + I+ DI+ L+ +++ +ENI G S+ NL +SI + Sbjct: 473 LGSKIVEKFI---DLGY-IKTVVDIYDLKNHRES----LENIDKMGKKSIENLLNSIEES 524 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 +N ++ I++LGI +G ++ LAK ++ I+ ++ ++ L + +G Sbjct: 525 KNRDYDKVIYALGIAEIGKVTSKILAKA-------SKNIDKLMTMTFEE---LTSIDGIG 574 Query: 606 DIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +I A I+ F++ +N ++ L LK + +N++ K +FTGTL+ Sbjct: 575 EIAANEIIAFFKKEKNQKIIQGLKEKGLKFEIKESETNTQNINPNFAGKNFLFTGTLKHF 634 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQ 720 R + +E + +LG + +S+ D +IVG+ GSKL+KAQ++ +KI+ EE+F+ L + Sbjct: 635 TREQIKEEIEKLGGKNLSSVSKNLDYLIVGEKAGSKLKKAQEIPTIKILTEEEFIELKDK 694 Query: 721 YN 722 ++ Sbjct: 695 FD 696 >gi|110803876|ref|YP_699521.1| NAD-dependent DNA ligase LigA [Clostridium perfringens SM101] gi|122956526|sp|Q0SQT6|DNLJ_CLOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110684377|gb|ABG87747.1| DNA ligase, NAD-dependent [Clostridium perfringens SM101] Length = 662 Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 218/710 (30%), Positives = 362/710 (50%), Gaps = 68/710 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGP 74 +K + L +E++ + YY + D +YD K+ + + DL + P P Sbjct: 4 KKLIEELVEELNKYAYEYYVLGNSSVTDKDYD--KKYYELV-----DLEKETGYKLPYSP 56 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFF 128 ++G + K TH SL+K +E++R++ R +F ++ + S + + Sbjct: 57 TQRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKY 116 Query: 129 TLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 L K DG I + Y E G + A RG G GEDV+A ++ I +IP L ++ + +E+ Sbjct: 117 ILTKKFDGLTINLSYDENGVLITGATRGTGAIGEDVTAQVKTIKSIP--LKIDCHDFLEI 174 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 GE ++ F N E P N RN A+G LR LN + R L+ F + +G Sbjct: 175 HGEAIMTTEAFEKYNSE----ADTPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYK 230 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 K EML ++ GFP+++ +R+ T I + ++ IR L YDIDGLV + Sbjct: 231 EGAPFKTYMEMLNFIKTKGFPMDDYIRECKTLDEIQKEIDYIRDIRFDLNYDIDGLVIAI 290 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ ++ LG + P+W I++KF ++A+T+LLD++ +GR+G ++P A LEPV + G Sbjct: 291 DDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGV 350 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATL+N D + R G +R+G V V+R+ +VIP+++ +V E + Sbjct: 351 TVKRATLNNMD---------DIARKG--VRLGAEVFVRRSNDVIPEIMG-VVPESLEGTK 398 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP C + +V + H C L C Q ++ + HF R+A NI G Sbjct: 399 EIEEPKVCPACGAHLVHE---------GVHIYCENTLGCKPQMVKTIVHFAGREAMNIAG 449 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ D IR +D++ L+ K+ ++ FG NL D+I K Sbjct: 450 FSERTAEQLFEKLD----IRDISDLYKLEYE------KLLDLDKFGPKKAQNLLDAIEKS 499 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +LE F++SLGI +VG + A+ L K + S +N + + L+ V VG Sbjct: 500 KDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKAT----------FEELVSVQDVG 549 Query: 606 DIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 DI+A++I+EF++ R + + LL V+P + E + S K +V TGTL+ R Sbjct: 550 DIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEV-LESPFMGKTVVVTGTLENYSRT 608 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 +E + LGA VS +S+KTD +I G+ GSK +KA+ LG+ I++EE+F Sbjct: 609 SIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGITILSEEEF 658 >gi|294669029|ref|ZP_06734115.1| DNA ligase, NAD-dependent [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309021|gb|EFE50264.1| DNA ligase, NAD-dependent [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 730 Score = 324 bits (830), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 207/578 (35%), Positives = 314/578 (54%), Gaps = 99/578 (17%) Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLN 180 D ++ + +EPK DG I++ Y G V AA RGDG +GEDV+ ++ + IP R+ N Sbjct: 19 DGSNPEYVIEPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGEN 78 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF 238 PE+IEVRGEV + K DF ALN G+KP+ANPRNAA+G LR+L+ + IT R L+F Sbjct: 79 PPELIEVRGEVLMLKADFAALNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHF 137 Query: 239 FVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRST 294 F + + + F A+ + L + LGF + NG F I +++Y +M+ R Sbjct: 138 FPYSVARQQGGFEAEEHIQELAYFQELGFSLPNG--NFGCFKNIDEVLAFYEQMQQKRPE 195 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LPY+IDG+V KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIGRTG +TP Sbjct: 196 LPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTP 255 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL PV +GG +TNATLHN+D + +D+RVGD V+V+RAG+VIP+VV Sbjct: 256 VARLHPVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAGDVIPEVV 304 Query: 415 DIIVNERH--------------------------------PDAQPFSFPSFCPICQSRVV 442 +I R P +P+ P+ CPIC+S + Sbjct: 305 RVIFERRPMQETAVAVSDDLKQQQDDLFAETPSANQTQSVPLHKPYRLPTHCPICRSEIE 364 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 R+ G+ VA RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ + Sbjct: 365 RE----EGEAVA--RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQD---- 414 Query: 503 SIRIPADIF-----TLQRRQQTSTT-KIENILGFGDVSVTNLYDS--------------- 541 +R AD++ TLQ+ ++T+ EN G + +L +S Sbjct: 415 LVRHFADLYRLDIPTLQKMKETADKGSSENENGDAETVSDDLSESNTPNGKKQPTKWAEN 474 Query: 542 ----INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 I + L RF+F+LGIRHVG A++LA+ + S ++ + I+A Sbjct: 475 ILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILAC------- 527 Query: 598 LIRVPLVGDIIAQAIVEFY-QNPRNICAVEALLKEVSP 634 +P +G ++A++I F+ Q+ + E L V+P Sbjct: 528 ---LPDIGTVVARSIAHFFAQDAQQAMIDELLAAGVAP 562 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%) Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 +V+ + K V TGTL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA Sbjct: 653 DVNEAVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKA 712 Query: 702 QQLGVKIMNEEQFLFLLQ 719 LGV +++EE+ L +L+ Sbjct: 713 NALGVAVLSEEELLAMLK 730 >gi|329924834|ref|ZP_08279795.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5] gi|328940396|gb|EGG36721.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5] Length = 670 Score = 324 bits (830), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 223/720 (30%), Positives = 366/720 (50%), Gaps = 70/720 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI-AHAFPDLARSEDPNGPLN 76 ++++ L E++ ++ YY +P++ D EYDAL + A+ A L P+ P Sbjct: 4 KEKMEKLIAELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAETGVTL-----PDSPTQ 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDN----SIFFT 129 ++GGE+ H P SL+K NIE LR + R+ R + K+ S + Sbjct: 59 RVGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPSPCYA 118 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIE 186 LE K DG + + Y+ GK V A+ RG+G GE + A ++ I ++P + IP IE Sbjct: 119 LELKFDGLTLNLTYQDGKLVQASTRGNGTVGEGILAQVKTIKSVP----MTIPYTEGTIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 V+GE ++ L++ ++ +P N RNAA+G LR LNP R LN + + +G Sbjct: 175 VQGEGIMN----LSVLEQYNQTAAEPLKNARNAAAGALRNLNPKVTAERKLNAYFYNVGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + I EM+ +R VN + F ++ +++ RS L Y IDG V K Sbjct: 231 SDGITFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVK 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V +F +++ LG + PRW +++KF ++ +T L + +GRTG +TP+AR+EPV + G Sbjct: 291 VTDFRIREALGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + N TL+N G + R +G RV ++R+ +VIP+++ + E+ D Sbjct: 351 VTVQNCTLNN---------IGDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEEQ--DG 399 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIE 484 + +P CP C + + AH C C Q + R+ HF SRDA +IE Sbjct: 400 EEILYPEQCPSCGFPLEQR---------GAHLFCNNKTGCKPQIVARITHFASRDAMDIE 450 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 + + +R PAD++TL S K+E FG+ NL D+I K Sbjct: 451 TFSDKTAIQLYDE----LGVREPADLYTLSF---DSLLKLER---FGEKKAQNLLDAIEK 500 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + L F+F+LGI + G + LA +Y +++N ++A ++ L+ +P V Sbjct: 501 SKERDLASFLFALGIPNTGKSTTKMLADHY-------RDLNRVMAATAEE---LVELPDV 550 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI 661 G I+A++I ++ +P +++ +L V K VS++ K +V TGTL + Sbjct: 551 GGIVAESIAGYFADPFAQASIQKMLSLGVQAKAPEAPKPVSTDSYFSGKTVVLTGTLHLL 610 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720 R +A E + LGA V+ +S+KTD++I G+ GSKL KAQQLG+ I+ +EE+F+ LL + Sbjct: 611 TREEATERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670 >gi|109947386|ref|YP_664614.1| NAD-dependent DNA ligase LigA [Helicobacter acinonychis str. Sheeba] gi|123362647|sp|Q17XL1|DNLJ_HELAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|109714607|emb|CAJ99615.1| DNA ligase [Helicobacter acinonychis str. Sheeba] Length = 654 Score = 323 bits (829), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 234/699 (33%), Positives = 362/699 (51%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY +PI+ D+ YD L + A P ++ N P K+G Sbjct: 18 LSHH---YYNLDEPIVSDAVYDELYQELKAYEEKNPSQIQA---NSPTQKVGATALNQFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+KGK Sbjct: 72 KNPHLTRMWSLDDVFNHNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQKGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 + A RG+G GE V+ + + I + N E IE+RGEV ISK DF ALN+E + Sbjct: 127 LMKATTRGNGLEGELVTTNAKHVANISHTIPYN--EEIEIRGEVIISKEDFNALNEERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ + IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SKITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I + Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSAIKHLSLNKNHQEIEANYHTLIQERERFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQCKIIRPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L CSA+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCSARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L ++ + D++L + G +A+++V FY N Sbjct: 510 GKGASKTLAKYGLY----------VLEKSEDEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + I ++ SS +K +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IQSLFDLLNPKNSDIIEEKQESSSIFSHKTIVLTGTLSKPRQEYAQ-ILENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KTD +IVG+N GSKL AQ+ GV I+NEE+ L L++ Sbjct: 616 SAKTDFLIVGENAGSKLSLAQKHGVNILNEEELLKYLKE 654 >gi|261409569|ref|YP_003245810.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. Y412MC10] gi|261286032|gb|ACX68003.1| DNA ligase, NAD-dependent [Paenibacillus sp. Y412MC10] Length = 670 Score = 323 bits (829), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 223/720 (30%), Positives = 366/720 (50%), Gaps = 70/720 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI-AHAFPDLARSEDPNGPLN 76 ++++ L E++ ++ YY +P++ D EYDAL + A+ A L P+ P Sbjct: 4 KEKMEKLIAELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAETGVTL-----PDSPTQ 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDN----SIFFT 129 ++GGE+ H P SL+K NIE LR + R+ R + K+ S + Sbjct: 59 RVGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPSPCYA 118 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIE 186 LE K DG + + Y+ GK V A+ RG+G GE + A ++ I ++P + IP IE Sbjct: 119 LELKFDGLTLNLTYQDGKLVQASTRGNGTVGEGILAQVKTIKSVP----MTIPYAEGTIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 V+GE ++ L++ ++ +P N RNAA+G LR LNP R LN + + +G Sbjct: 175 VQGEGIMN----LSVLEQYNQTAAEPLKNARNAAAGALRNLNPKVTAERKLNAYFYNVGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + I EM+ +R VN + F ++ +++ RS L Y IDG V K Sbjct: 231 SDGITFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVK 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V +F +++ LG + PRW +++KF ++ +T L + +GRTG +TP+AR+EPV + G Sbjct: 291 VTDFRIREVLGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + N TL+N G + R +G RV ++R+ +VIP+++ + E+ D Sbjct: 351 VTVQNCTLNN---------IGDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEEQ--DG 399 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIE 484 + +P CP C + + AH C C Q + R+ HF SRDA +IE Sbjct: 400 EEILYPEQCPSCGFPLEQR---------GAHLFCNNKTGCKPQIVARITHFASRDAMDIE 450 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 + + +R PAD++TL S K+E FG+ NL D+I K Sbjct: 451 TFSDKTAIQLYDE----LGVREPADLYTLSF---DSLLKLER---FGEKKAQNLLDAIEK 500 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + L F+F+LGI + G + LA +Y +++N ++A ++ L+ +P V Sbjct: 501 SKERDLASFLFALGIPNTGKSTTKMLADHY-------RDLNRVMAATAEE---LVELPDV 550 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI 661 G I+A++I ++ +P +++ +L V K VS++ K +V TGTL + Sbjct: 551 GGIVAESIAGYFADPFAQASIQKMLSLGVQAKAPEAPKPVSTDSYFSGKTVVLTGTLHLL 610 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720 R +A E + LGA V+ +S+KTD++I G+ GSKL KAQQLG+ I+ +EE+F+ LL + Sbjct: 611 TREEATERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670 >gi|317009372|gb|ADU79952.1| NAD-dependent DNA ligase LigA [Helicobacter pylori India7] Length = 656 Score = 323 bits (828), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 231/699 (33%), Positives = 358/699 (51%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P ++ N P K+G Sbjct: 18 LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPSHIQA---NSPTQKVGATTTNPFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE VSA + I IP ++ IE+RGEV ISK DF ALN E + Sbjct: 127 LVSATTRGNGLEGELVSANAKHIANIPHAIAYKGE--IEIRGEVIISKEDFEALNKERLD 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R + +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSAIQYLNLNKNHQEIEENYHTLIRERESFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVAILEPVEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ + I Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK----LIV 458 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 459 NALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N + + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLAKYGL----------NALEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + ++ SS NK +V TGTL K ++ AQ + LGA +++ + Sbjct: 557 IRSLFDLLNPKNSGVTEEKQKSSSVFSNKTIVLTGTLSKPRQEYAQ-MLENLGAKIASSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KTD +IVG+N GSKL A++ GV ++NEE+ L L++ Sbjct: 616 SAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKE 654 >gi|218509071|ref|ZP_03506949.1| NAD-dependent DNA ligase LigA [Rhizobium etli Brasil 5] Length = 275 Score = 323 bits (828), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 152/275 (55%), Positives = 205/275 (74%), Gaps = 1/275 (0%) Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 GFPVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD LQ++LG R+RSPRW Sbjct: 1 GFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVDSLELQQRLGFRSRSPRW 60 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 +HKF +QA T + I+IQ+GRTG LTPVARL+P+ +GG ++TNATLHNEDYIKG+ Sbjct: 61 ATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVVVTNATLHNEDYIKGIGN 120 Query: 385 SGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 SG+ +R DIR D V+V+RAG+VIP+++D+++ +R DA+ + FP CP+C S VR Sbjct: 121 SGERIRPEEHDIRERDTVIVQRAGDVIPQILDVVMEKRAADARSYEFPKTCPVCGSHAVR 180 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 ++N KTGK + RCTGG C AQ E LKHFVSR+AF+IEGLG +Q+DFFF++EDP+ Sbjct: 181 EVNEKTGKTDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGLGSKQVDFFFENEDPSLQ 240 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 IR +IFTL++RQQ S TK+ENI GFG VSV L Sbjct: 241 IRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKL 275 >gi|269114974|ref|YP_003302737.1| NAD(+)-dependent DNA ligase [Mycoplasma hominis] gi|268322599|emb|CAX37334.1| NAD(+)-dependent DNA ligase [Mycoplasma hominis ATCC 23114] Length = 668 Score = 323 bits (827), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 229/709 (32%), Positives = 370/709 (52%), Gaps = 49/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED-PN 72 IE+ RKE+ L+ +IS D+ YY P + D YD + A+ + E+ N Sbjct: 7 IEKIRKEIFDLQAKISAWDNAYYNLDSPEVPDEIYDVEFNKLKALEEKYASFFSDEELKN 66 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P KI + KV H P LSL K +++++++KFI I KK + F +EP Sbjct: 67 SPTRKINALASDLFKKVKHKRPMLSLNKAYSLDEIQKFIDNI-----KKITSDFSFFIEP 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG I+I YE GK V A RGDG +GEDV+A + + IP+ ++ E +EVRGEVY Sbjct: 122 KIDGLSISIIYEDGKLVRAITRGDGITGEDVTANVVQMSCIPK--TIEYKESLEVRGEVY 179 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 ++ +DF LN ++ + ANPRNAA+G LR+LN I R L+ F++ + + Sbjct: 180 LAISDFEKLNLKLGQENKNKLANPRNAAAGTLRQLNSQIIKERNLSAFLYYVVDPLQHNI 239 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K E + ++ GFPV + V+ ANT I Y K+ + + Y+ DG+V K++E Sbjct: 240 KTMQEEHEFLKTYGFPVTHEVQHANTLQDIEEYIRNFKNQKLLIDYETDGVVIKLNEVQY 299 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +LG A+ P + I+ K+ +T + I +GRTG++T A LEPV I G+L++ A Sbjct: 300 FDKLGSTAKFPHYAIAFKYEPNVETTTIKRIYATVGRTGLVTYNAELEPVEISGSLVSFA 359 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TL+N YIK L ++ D V +K+AGE+IP V+ +I ++ D F Sbjct: 360 TLNNFQYIKDL-----------NLNENDLVYIKKAGEIIPCVIGLISGKKEIDH--FQKV 406 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 FCP C +++V + +TG C+ C Q +L HF S+D +I +G++ + Sbjct: 407 EFCPYCHNKLV---DSETG---LEQFCSND-QCPEIQRRKLIHFCSKDGLDINTMGERNI 459 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D F K+ I P DIF L+ ++Q + + G+ S+ N+ SI++ +N L Sbjct: 460 DLFLKNS----LISNPIDIFNLKNKKQD----LLKLNRMGEKSIENILISIDECKNKPLY 511 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + I +L I +G ++A+ +A S N N D+ LI +GD I + Sbjct: 512 KMISALSIPLIGVKLAKFVASKIKSLHNLL----------NYDFSQLIDYHEIGDKIINS 561 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 I+ + N N VE ++ + + +++++ +ENK V TGTL R + + Sbjct: 562 IISWISNDFNKKLVEDIIN-LGYDLKDENESITNLLENKSFVITGTLGH-PRSYFERLIE 619 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G ++ + +S KT+ ++ G+N GSKL+KA +L + I+ EE ++ Q Sbjct: 620 KNGGLIHSSISSKTNYLLAGENAGSKLQKANKLNITIITEEDLFKMIGQ 668 >gi|331695637|ref|YP_004331876.1| DNA ligase [Pseudonocardia dioxanivorans CB1190] gi|326950326|gb|AEA24023.1| DNA ligase [Pseudonocardia dioxanivorans CB1190] Length = 812 Score = 323 bits (827), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 187/564 (33%), Positives = 293/564 (51%), Gaps = 32/564 (5%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ ++L E++ H YY P++ D ++D L R A+ +PDL P+ P K Sbjct: 27 RERHAALATEVADHQFRYYVLDAPVVSDGQFDELWRELVALEERYPDLV---SPDSPTQK 83 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G H LSL+ ++ ++LR + R+ R + + + E KIDG Sbjct: 84 VGSRFATEFAAHDHLERMLSLDNAFSADELRTWAERVGR----EIGTDVHYLCELKIDGL 139 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYI 193 + + YE GK V A RGDG +GEDV+ +R + +P L+ +P ++EVRGEVY Sbjct: 140 AVNLLYENGKLVRALTRGDGRTGEDVTLNMRTLAEVPEQLTGTAEFPVPALLEVRGEVYF 199 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 DF ALN ++ G+ P+ANPRN A+G LR+ +P +R L HGLGK + Sbjct: 200 RLEDFQALNASLVEAGKPPFANPRNTAAGSLRQKDPRVTASRNLRLICHGLGKREGFNPE 259 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + +R G PV+ + +V++ R + ++IDG+V KVDE +LQ Sbjct: 260 RLSQAYDALRAWGLPVSGRTKIVQGIDQVVAHVEYWGEHRHDIEHEIDGIVVKVDEVALQ 319 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +R+PRW I+ K+ ++A+TRLLDI + +GRTG +TP A +EPV + G+ ++ AT Sbjct: 320 RRLGATSRAPRWAIAFKYPPEEATTRLLDIRVNVGRTGRVTPFAFMEPVTVAGSTVSLAT 379 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D ++ R G + +GDRV++++AG+VIP+V+ I++ R + F P+ Sbjct: 380 LHNADEVR---------RKG--VLIGDRVVIRKAGDVIPEVLGPIIDVRDGSEREFVMPT 428 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + + + K G + RC +C AQ ERL H R AF+IEGLG + Sbjct: 429 HCPECGTELA---HQKAGDVDI--RCPNARSCPAQLRERLFHVAGRGAFDIEGLGYEAAT 483 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 A + D+F L G + L D++ K ++ L R Sbjct: 484 ALLN----AGVVADEGDVFALTEEDLLRVDLFRTKAGVLSANGRKLLDNLEKAKDRPLWR 539 Query: 553 FIFSLGIRHVGAEIARSLAKYYLS 576 + L IRHVG A++LA+ + S Sbjct: 540 VLVGLSIRHVGPTAAQALAREFGS 563 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 45/79 (56%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 + +V +E +V TG++ R +A+E + G + +S+KT ++ GD PGSK + Sbjct: 718 DTSVPRTLEGMSIVVTGSMAGYSRDEAKEAIAARGGRAAGSVSKKTSFVVAGDAPGSKYD 777 Query: 700 KAQQLGVKIMNEEQFLFLL 718 KA +L V I++E F LL Sbjct: 778 KALELRVPILDEAGFGVLL 796 >gi|255281707|ref|ZP_05346262.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469] gi|255267774|gb|EET60979.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469] Length = 674 Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 215/714 (30%), Positives = 359/714 (50%), Gaps = 50/714 (7%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++E ++++ L + + YH D YY P I D EYD + ++ P+L P Sbjct: 4 TVETIQQKIEELRKTLEYHSDRYYNQDNPEISDYEYDQMMLELKSLEKEHPELI---TPE 60 Query: 73 GPLNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +GG V H +P LSL +++ E++ F+ + + + F +E Sbjct: 61 SPTQHVGGTAKREAGVLVKHRVPMLSLADVFSREEVDAFVQDMQAQFGNPE-----FVVE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGH-SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 KIDG + +RY G A RGDG GEDV+ R I + L IP +E+RGE Sbjct: 116 TKIDGLSMALRYTDGVLTTAITRGDGIIQGEDVTENARVIKDVKTRLKHPIP-YLEIRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 VY++ F +N++ +G+K +ANPRN A+G LR+L+ + IT R L+ FV + +T Sbjct: 175 VYMTDAAFEKVNEKQELLGKKLFANPRNCAAGTLRQLD-SRITKERELSLFVFNIQETQG 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 E + ++ G V + + T + + E+ S+R L YDIDG V K++ Sbjct: 234 REFTTHTEGYEYLKSNGIRVIDHYKVCRTADEVWNAIEEIGSMRGELGYDIDGAVVKLNS 293 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + + +G ++ PRW +++K+ ++ + LLDI++ +GRTG +TP A EPV + G + Sbjct: 294 LAQRAIVGATSKVPRWAVAYKYPPEEKESVLLDIELSVGRTGRITPTAVFEPVRLCGTSV 353 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATLHN+D+I L DI +GD ++V ++GE+IPK+ + +R A+ F Sbjct: 354 SRATLHNQDFIDDL-----------DICIGDTIVVYKSGEIIPKIRAVKKEKRPQGAKRF 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P CP+C + VR+ K A RCTG C AQ + +FV RDA +I+G G Sbjct: 403 RIPDVCPVCGAPAVRE------KDTADIRCTGS-NCPAQLERHIINFVGRDAMDIKGFGA 455 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + ++ ADIF+L+ ++ IE + + + L +I + Sbjct: 456 NYIIELVR----LGYLKNVADIFSLKEHREEL---IEQGIIGKEKNTDKLLKAIEDAKAN 508 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +R + LGI+ VG ARSL ++ + + A + +D +G I Sbjct: 509 QPDRLLTGLGIQGVGKATARSLMSHFGTIEKLAGASQEELESVSD----------IGSIS 558 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A+AI ++ P N +E L++ ++ ++ + K V TGTL + R +A Sbjct: 559 AEAIRSYFAEPDNRRLLEK-LRDAGVNMEAEQEEAGTVFAGKTFVVTGTLPTMGRSEAVS 617 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + +LG + +S+KT ++ G+N GSKL KAQQLG+ +++E +FL + N Sbjct: 618 LIQKLGGKAAGSVSKKTSYVLAGENAGSKLTKAQQLGIPVIDEAEFLEMAAAEN 671 >gi|300933643|ref|ZP_07148899.1| NAD-dependent DNA ligase LigA [Corynebacterium resistens DSM 45100] Length = 680 Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 219/712 (30%), Positives = 354/712 (49%), Gaps = 60/712 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H + YY Y P I D+++DAL + + P+L P L ++ Sbjct: 11 LADEVRLHRERYY-YGDPTISDADFDALLAQLRTLEDEHPELVTGPSP---LTEVAPTPP 66 Query: 84 LS--LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 S V H LSL+ +++ L W ++ + T E KIDG I + Sbjct: 67 TSSPFRNVDHRERMLSLDNVFDGAQLES--------WLERTPADTYLT-ELKIDGASINL 117 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKND 197 Y G+ A RGDG +GED++ + + IP+ L +PE++EVRGEV+I+ D Sbjct: 118 LYVNGELELALTRGDGTTGEDITHNAKTLDDIPQKLKGTEEFPVPELVEVRGEVFITVED 177 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F +N + A G K +ANPRNAA+G +R+ N D R L HG+G + Q+E Sbjct: 178 FATMNAQRQAEGLKMFANPRNAAAGAMRQKNAEDTAKRPLRLICHGIGAREGFTPQSQHE 237 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 Q + G PV+ +Q ++ +V R +++DG+V KVD S Q +LG Sbjct: 238 AYQAIAAWGLPVSPYTKQVHSAKEVVEQVTYWGEHRHDAAHEMDGVVIKVDSLSEQLELG 297 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN- 375 +R+PRW I++K+ ++A T L +I I IGRTG TP A +EP + G+ +T ATLHN Sbjct: 298 ATSRAPRWAIAYKYPPEEAVTTLRNIRIGIGRTGRATPYAVMEPKYVAGSTVTMATLHNP 357 Query: 376 -EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 E + KG + +GDR+++++AGEVIP+V+ + +ER +PF + S C Sbjct: 358 TEAHRKG-------------VMLGDRIMIRKAGEVIPEVLGPVEDERTGKERPFIYSSIC 404 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + + K G A RC +C Q RL + R AF+I+ LG++ Sbjct: 405 PECGTVLAPS---KEGD--ADWRCPNTRSCPGQLHTRLTYLSGRGAFDIDALGERAAYDL 459 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 S + + +F L+++ TT G + + L + + + + L R I Sbjct: 460 INS----GVLSDESGLFNLKKQDLERTTAYSTKAGSLNKAGETLLEKLESAKQVDLWRVI 515 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-- 612 +L IRH G A++LA +Y ++I A + + VG+IIAQ+I Sbjct: 516 VALSIRHAGPTAAKALAAHY----------HSIAAIQGASVEEMSTIEGVGEIIAQSIAD 565 Query: 613 ---VEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 V++++N N + + ++E P + + ++ +V TGTL+ R A+E Sbjct: 566 WFTVDWHRNIVNSWSTAGVRMEEEVPEKSEEDLAQAKLLDGLTIVVTGTLENFDRDGAKE 625 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G + +S+KT ++ G+ GSKL KA+ LGV ++NE+QF+ LL++ Sbjct: 626 AIEARGGKAAGSVSKKTSFLVAGEKAGSKLTKAEDLGVPVLNEQQFVELLEK 677 >gi|308184399|ref|YP_003928532.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SJM180] gi|308060319|gb|ADO02215.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SJM180] Length = 656 Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 230/699 (32%), Positives = 360/699 (51%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY + I+ D+ YD L + A P+ ++ N P K+G Sbjct: 18 LSHH---YYNLDESIVSDAVYDELYQELKAYEEENPNRIQA---NSPTQKVGATTTNPFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y GK Sbjct: 72 KNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYHHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE V+ + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVSATTRGNGLEGELVTHNAKHIANIPHFIAYNGE--IEIRGEVIISKEDFEALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+G+ S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGEHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + ++ SS +K +V TGTL K ++ AQ + LGA +++ + Sbjct: 557 IRSLFDLLNPKNSDMAEEKQKSSSVFSDKTIVLTGTLSKPRQEYAQ-MLENLGAKIASSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KTD +IVG+NPGSKL AQ+ GV ++NEE+ L L++ Sbjct: 616 SAKTDFLIVGENPGSKLALAQKHGVSVLNEEELLKRLKE 654 >gi|262341099|ref|YP_003283954.1| DNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272436|gb|ACY40344.1| DNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 681 Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 215/708 (30%), Positives = 350/708 (49%), Gaps = 70/708 (9%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +E+S ++ YY + I D +D + +P+ DP P KIG E++ Sbjct: 28 LRKELSKYNYQYYNFDTSDISDFHFDKKLEELFFLEKKYPEFY---DPTSPTIKIGAEIH 84 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF---FTLEPKIDGTMIT 140 H SL+K ++ ++L W+KK SI F E K DG I Sbjct: 85 EPSTVFYHKYKMYSLQKTYSKKELI--------IWKKKISKSIHTFSFVCELKYDGVSIN 136 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFL 199 + Y+ G A RG+G GEDV+ I+ I +P ++ N P +E+RGEV+++ +F+ Sbjct: 137 LIYKNGFLTNAGTRGNGEKGEDVTENIKTIKHVPLKLRGNNYPAYLEIRGEVFLTTKNFI 196 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV---HGLGKTSEIFAKGQYE 256 +N + I G+ PYANPRN ASG L+ + R N F H +GK QYE Sbjct: 197 EINKKRIKSGKTPYANPRNTASGTLK-IQDRKKVRQRNLFCIAFHVVGKNLPF--DTQYE 253 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ ++ GF + R + + + + LPY IDG+V KV+E+ Q LG Sbjct: 254 SLKHIKNWGFQIPETARFCKNMEEVFHFIDFWNLWKDKLPYQIDGIVIKVNEYQKQSLLG 313 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 + PRW I++KF +K + T+LL + Q+GRTGI+TPVA + P+ I G +I L+N+ Sbjct: 314 FTNKYPRWAIAYKFRQKLSETKLLSLTFQVGRTGIVTPVANVVPILISGTIIKRVALYND 373 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 +I+ + I GD +L+++ G +IPKV I + +R A P F CP Sbjct: 374 SFIQKM-----------GIYHGDTLLLEKGGNIIPKVTRINIKKRSSQAFPVFFLKKCPS 422 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S + ++ CT C +Q++E+++HFVS A NI+ +G + + +K Sbjct: 423 CNSVLTKN--------NELFYCTNQ-NCFSQRIEKIRHFVSVKAMNIQKIGNEMIKKLYK 473 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +++ + ++ I G + ++ ++I K + R +++ Sbjct: 474 K----------GFLYSFYNLYELKKEELLQIDGVKEKLADSIINNIKKSKENPFSRVLYA 523 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIRHVG +I++ L K +L +IN+++ N D LI + +G I ++I+ ++ Sbjct: 524 LGIRHVGEDISKKLTKQFL-------DINSLMHANYDH---LISISGIGKKITESIITYF 573 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVS---SEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 N AV+ L+K G H S S +E K VFTG L + RHKAQ V L Sbjct: 574 SIYENRHAVQMLIK-----YGLHFSKCSKKLSSLEGKSFVFTGKLSCMTRHKAQNMVENL 628 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720 G V ++ + + I++G N GSK +K+ + V+I+ E FL +L++ Sbjct: 629 GGKVYNTVNNQINFIVIGKNFGSKFKKSMKKNHVQILTENLFLDMLKK 676 >gi|160947381|ref|ZP_02094548.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270] gi|158446515|gb|EDP23510.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270] Length = 662 Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 214/700 (30%), Positives = 365/700 (52%), Gaps = 80/700 (11%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PNGPLNKIGGEMNLSLFK 88 YY +P + D+EYD L + +L + E PN P ++GGE+ K Sbjct: 18 YYTLDEPSVSDAEYDKL----------YDELLKLEKETGVILPNSPTQRVGGEVLEKFEK 67 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-----NSIFFTLEPKIDGTMITIRY 143 TH SL+K + E+L++F R + + + ++ + +E K DG I + Y Sbjct: 68 HTHLKELYSLQKAQSFEELKEFHNRCTKLLNEYNSINNSKKTLEYYVEFKFDGLTINLTY 127 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 +KG V A+ RG+G GE+V ++ I +IP L ++ ++E++GE + + N+ Sbjct: 128 DKGILVSASTRGNGVYGEEVFEQVKTIKSIP--LEIDYKGLVEIQGEAIMPLSALTKFNE 185 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262 P N RNAA+G +R L+P +R L+ F++ +G S+ K Q EM+ ++ Sbjct: 186 ----TAEVPLKNARNAAAGAIRNLDPKKTASRNLDAFIYNVGFKSDEQFKTQKEMISFLK 241 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 F VN ++ I E+ +R + Y DG+V KV++F L++ G + P Sbjct: 242 ENKFKVNEYEKKCLNLKEIKDKIREIDVLRKKVDYLTDGVVIKVNDFELREFFGYTNKFP 301 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 R+ I++KF ++ ST L ++ +GRTG +TP A LEPV IG + ATL+N D Sbjct: 302 RFAIAYKFEAEEYSTILKEVVWNVGRTGKVTPTAILEPVEIGDVTVQRATLNNYD----- 356 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 ++R + +++ RVL++R+ +VIP+++ + +E + + P+ CP C S ++ Sbjct: 357 ----DILR--KKVKINSRVLIRRSNDVIPEILGTM-DEDNGNEIEIKMPTHCPYCNSELI 409 Query: 443 RDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 RD H CT LAC+ Q L HF S++A NIEGL ++ ++ F Sbjct: 410 RD---------GVHFFCTNTLACTPQLTSSLVHFSSKNAMNIEGLSEKTIESLF----DK 456 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + I+ L+ + + K F D V NL +SI + + ++LE FI++LGI++ Sbjct: 457 LGVDKVYKIYDLKYDELITLEK------FKDKKVNNLLNSIEESKKVNLENFIYALGIKN 510 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG + A+ LAK Y++ N + + ND VGD++A +I EF+ + + Sbjct: 511 VGIKTAKDLAKKYINLDNLRETTVEELLQIND----------VGDVVANSIFEFFNDEYS 560 Query: 622 ICAVEALLK---EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 A+ LL+ EV P +++ SE +KK+V TGT + +R ++ +Q G +V Sbjct: 561 KDALNKLLEKGIEVIP----YKEISKSEFTDKKIVITGTFKNYKRKDLEDIFSQNGLIVQ 616 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE---EQFL 715 + +++ TD ++VG+ GSKL+KAQ+LG+ I++E E+FL Sbjct: 617 SAVAKSTDFLVVGEKAGSKLKKAQELGINIISEKNLEEFL 656 >gi|81390835|sp|Q6AEE5|DNLJ_LEIXX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50951550|gb|AAT89251.1| DNA ligase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 747 Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 242/774 (31%), Positives = 369/774 (47%), Gaps = 101/774 (13%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR E L I D YY+ ++ D EYD + RR + + P+L +S+D P Sbjct: 5 ARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPEL-QSQD--SPTQ 61 Query: 77 KIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +GG +LF V H+ LSL+ +++ E + +I R ++ D + E KID Sbjct: 62 TVGGRAQTTLFAPVEHAERMLSLDNVFSFEAFEAWAAKIERDAGRRVD----YLCELKID 117 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEVYI 193 G I +RYE G V AA RGDG GEDV+ IR IP I + LS P ++EVRGEV+ Sbjct: 118 GLAINLRYENGVLVTAATRGDGVVGEDVTENIRHIPAITQRLSGAGPFPPVVEVRGEVFF 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRL----NPT------DITRYLNFFVHGL 243 F LN A G + +AN RNAASG LR+ NP D L VHG+ Sbjct: 178 PVAKFEELNANQQAAGERVFANARNAASGSLRQKAEGKNPAQRRLMRDRLGRLRMLVHGI 237 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G Q + + +R G P + R T + R T+ ++IDG+V Sbjct: 238 GAWPNPPVATQSGVYELLRSWGLPTSAHGRVFGTVQEAADFIGRSAERRDTVEHEIDGVV 297 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVDE L +LG +R+PRW I++K+ +Q +T+LLDI + +GRTG TP A +E V + Sbjct: 298 IKVDELVLHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFAVMEKVKV 357 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ + ATLHN+D +K + + +GD V++++AG+VIP+V+ +V R Sbjct: 358 AGSEVRQATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEVLGPVVELRDG 406 Query: 424 DAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + F+ P+ CP C + L P K G + RC C AQ R++H SR + Sbjct: 407 TEREFAMPTDCPECGT----PLAPAKEGDI--DLRCPNAEFCPAQVRGRVEHIGSRGGLD 460 Query: 483 IEGLGK------QQLDFFFKSEDPA----FSIRIPADIFTLQ---RRQQT-----STTKI 524 IE LG+ Q F ++ P F +R+ D+F ++ R +T + T + Sbjct: 461 IEALGEVAAAALTQPRFPERAPLPTEAGLFGLRL-EDLFPIEVVVRDSETGLPKLTETGV 519 Query: 525 ENI--------------------------LGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 E + + S L ++ R L R + SL Sbjct: 520 EKVDAPFRRRRQKKDGAFDPEAEAFDGDEIAVPSKSAIELLANLRAARTKPLWRILVSLN 579 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG AR+LA ++ S ++ I A + D+ L V VG I+A A++ +++ Sbjct: 580 IRHVGPVAARALADHFGS-------LDAIRAASRDE---LAAVDGVGGIVADAVLSWFEI 629 Query: 619 PRNICAVEALLKE-------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + VE ++ P GR + + +V TG+L+ R AQE + Sbjct: 630 GWHCEIVENWARDGVQFAIPGHPGPGRADTG-GGVLSGLTVVATGSLEGYTREAAQEAIV 688 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 G ++ +S+KTD + G GSKL KA++LGV++++ QF L++Q L Sbjct: 689 AAGGKAASSVSKKTDFVAAGPGAGSKLAKAEELGVRVLDAAQFTILVEQGPGAL 742 >gi|124024594|ref|YP_001018901.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT 9303] gi|166216228|sp|A2CDS6|DNLJ_PROM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123964880|gb|ABM79636.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9303] Length = 696 Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 215/715 (30%), Positives = 356/715 (49%), Gaps = 71/715 (9%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED----PNGPLNK 77 + L Q ++ YY P + D+ YD L R DL + P+ P + Sbjct: 13 AELRQLLNQAAHSYYVLDTPTMEDAVYDRLYRE-------LLDLEVKDSSLLTPDSPTQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-----YRFWQKKDDNSIFFTLEP 132 IGG V H IP LSL+ +N+++L + R+ Y+ K + E Sbjct: 66 IGGAPAQGFASVPHRIPLLSLDNAFNVDELTGWYVRLVKLLGYQTNPKTPQPDLSMVGEL 125 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEV 191 KIDG + + YE G + AA RGDG +GE+++A +R I +IP L L + P +EVRGE Sbjct: 126 KIDGNALALSYEHGVLIRAATRGDGANGEEITANVRTIASIPLRLQLVHPPAWLEVRGEA 185 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 +I + F +N G +ANPRNA +G LR+L+P + +R L+FF + L Sbjct: 186 FIPNSTFADINTARGERGDVAFANPRNACAGTLRQLDPKVVASRQLDFFAYTLHLPDNWQ 245 Query: 251 AKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 AK Q+ +LQ ++ +GF VN + ++ R LPY DG+ Sbjct: 246 AKADDPASPMNQWAVLQWLQAIGFKVNPNTALLTDLTAVEHFFKLWDEARHQLPYATDGV 305 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V K+++ LQ+ G ++PRW I+ K+A ++A ++LL + Q+GRTG +TPVA E + Sbjct: 306 VVKLNDLQLQETAGFTQKAPRWAIALKYAAEEAPSKLLRLTCQVGRTGAVTPVAEFEAIP 365 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ ATLHN + + L D+ GD ++V++AGE+IP+V+ ++ R Sbjct: 366 LAGTSVSRATLHNANRVSEL-----------DLHSGDTIVVRKAGEIIPEVIGVLRELRP 414 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 AQ P CP C+S +VR+ G+ AA RC +C A L+H+VS+ A + Sbjct: 415 AGAQTLKLPHICPECRSDLVRE----EGE--AATRCVNN-SCPAILRGTLRHWVSKGALD 467 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 ++GLG + ++ ++ AD++ L+ S ++ G+ S NL ++ Sbjct: 468 VDGLGSKLIEQLVNRG----LVQSIADLYALEASLLASMDRM------GNKSTENLITAL 517 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 ++ + ++ LGI HVG A++LAK + S A N + S+ Sbjct: 518 QASKSKPWHKQLYGLGIHHVGEVNAKALAKKFPSAATLA----NAACKAPEQITSVFG-- 571 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---------LV 653 VG+ IAQ++ +++ P N + A LK++ S+ +E ++ + + K+ V Sbjct: 572 -VGNEIAQSLQQWFATPAN-QELLAKLKQLGISLEANEDELAHDTDQKQRTVSLQGQTFV 629 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 TGTL + R +AQ + G V++ +S+ T ++ G GSKL KA++L V + Sbjct: 630 LTGTLPTLSRSEAQALIEAAGGKVNSSVSKNTSYVVAGAEAGSKLNKAEKLRVTV 684 >gi|108563021|ref|YP_627337.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPAG1] gi|123246990|sp|Q1CTQ9|DNLJ_HELPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|107836794|gb|ABF84663.1| DNA ligase [Helicobacter pylori HPAG1] Length = 656 Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 230/699 (32%), Positives = 357/699 (51%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P ++ N P K+G Sbjct: 18 LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPSHIQA---NSPTQKVGATATNPFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y GK Sbjct: 72 KNPHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYHHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 + A RG+G GE VSA + I IP ++ IE+RGEV ISK DF ALN E + Sbjct: 127 LISATTRGNGLEGELVSANAKHIANIPHAIAYKGE--IEIRGEVIISKKDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+I ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAMINRATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSYELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ + I Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK----LIV 458 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 459 NALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G +A+++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + ++ SS NK +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KT+ +IVG+N GSKL AQ+ GV ++NEE+ L L++ Sbjct: 616 SAKTNFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKE 654 >gi|317010835|gb|ADU84582.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SouthAfrica7] Length = 657 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 231/700 (33%), Positives = 361/700 (51%), Gaps = 65/700 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY +PI+ D+ YD L + A P ++ N P K+G Sbjct: 18 LSHH---YYNLDEPIVSDAVYDELYQELKAYEEENPSYIQA---NSPTQKVGATTPNPFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N ++L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNYDELQTWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE V+ + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVTTNAKHITNIPHAIAYNGE--IEIRGEVIISKEDFDALNKERLD 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E + QK+LG +SP++ Sbjct: 243 FSAIKHLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNTQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+IT ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAIITKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIMRPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+++ I Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEAK----LIV 458 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 D++ L+ K F NL D+I K +N L R I +LGI H+G Sbjct: 459 NALDLYALKLEDLIQLDK------FKMKKAQNLLDAIQKSKNPPLWRLINALGIEHIGKG 512 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 +++LAKY L N++ + ++L + G +A+++V FY + + + Sbjct: 513 ASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMARSLVNFYASNQEF--I 557 Query: 626 EALLKEVSPSIGR-HEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 ++L ++P EK SS I +K +V TGTL K ++ AQ + LGA +S+ +S Sbjct: 558 QSLFDLLNPKNSDIEEKQESSSIFSHKIIVLTGTLSKPRQEYAQ-ILENLGAKISSSVSA 616 Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 KTD +IVG+N GSKL A++ GV ++NEE+ L L++ ++ Sbjct: 617 KTDFLIVGENAGSKLSLAKKHGVSVLNEEELLKYLKELDS 656 >gi|254517673|ref|ZP_05129729.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA] gi|226911422|gb|EEH96623.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA] Length = 663 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 217/718 (30%), Positives = 372/718 (51%), Gaps = 73/718 (10%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------P 71 ++ + L E++ + YY P + D +YD + +L + E+ P Sbjct: 4 KQRIEELVNELNRYAYEYYSLDNPSVSDKDYD----------KKYDELKKLEEETNYVLP 53 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSI 126 P ++G + K TH SL+K ++E+L+ + R +F ++ +D Sbjct: 54 YSPTLRVGDRVLEGFNKYTHKARLWSLDKAQSLEELKDWHNRNLKFIREMNSRGEDLPEP 113 Query: 127 FFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + L K DG + + Y E G AA RG+G GE+VSA ++ I +IP L +N ++ Sbjct: 114 RYVLTKKFDGLTVNLTYDENGILASAATRGNGEVGEEVSAQVKTIKSIP--LKINNDDLF 171 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244 E+ GE ++ F N P N RN A+G LR LN + R L+ F + +G Sbjct: 172 EIHGEAIMTTEAFENYNKNADV----PLKNLRNGAAGALRNLNLKETAKRNLSAFFYDVG 227 Query: 245 -KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 K E F K EML ++ G P+++ +R T I + ++ IR L YDIDG+V Sbjct: 228 YKEGEGF-KTYEEMLNFIKDKGLPMDDYIRYCTTIEEIEKEIDYIREIRFDLNYDIDGVV 286 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 +D+ ++ +G + P+W I++KF ++A+T+L+D++ +GR+G + P A L+P+++ Sbjct: 287 IAIDDIRTRELMGYTVKFPKWAIAYKFEAQEATTKLVDVEWNVGRSGRVGPTAILDPIDL 346 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + ATL+N D I+ R G +R+G V V+R+ +VIP+++ +V E Sbjct: 347 AGVTVKRATLNNIDDIR---------RKG--VRIGAEVFVRRSNDVIPEIMG-VVTESLE 394 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + + P CP C + +V++ + C L+C Q ++ + H+ SRDA NI Sbjct: 395 GTEEINVPEVCPACGAHLVQN--------GVHYFCENTLSCKPQMVKTIVHYASRDAMNI 446 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EG ++ + F+ D I+ AD++ LQ+ + K FG NL D++ Sbjct: 447 EGFSEKTAEQLFEKLD----IKSIADLYKLQKEELLQLDK------FGPKKAQNLLDAVE 496 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K ++ L RFI+SLGI +VG + A+ L + S + + + DD L+ V Sbjct: 497 KSKDCELYRFIYSLGIPNVGVKTAKDLVNKFKSLEGLK-------SASFDD---LVSVQD 546 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 VG I+A+ ++EF++ + + + LL+ V+P ++ +SS E K +V TGTLQ Sbjct: 547 VGGIVAKCVLEFFKEEKAVNTINELLELGVNPKF-EEKQIISSPFEGKTVVVTGTLQNYS 605 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R + + + LGA VS +S+KTD +I G+ GSKL+KA +LGVK++NE++F ++++ Sbjct: 606 RGEIKAKLELLGAKVSGSVSKKTDFVIAGEEAGSKLDKAIELGVKVLNEDEFEDIIKE 663 >gi|260577534|ref|ZP_05845474.1| DNA ligase [Corynebacterium jeikeium ATCC 43734] gi|258604338|gb|EEW17575.1| DNA ligase [Corynebacterium jeikeium ATCC 43734] Length = 688 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 216/714 (30%), Positives = 349/714 (48%), Gaps = 65/714 (9%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ +H YY Y +P I D+++DAL + + A P++ P + Sbjct: 10 LADQVRHHRQLYY-YGEPEISDADFDALLQELKDLEQAHPEVVTGASPTEEVAP--APPT 66 Query: 84 LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 S F+ V H LSL+ +++ E L ++ R + + E KIDG I + Sbjct: 67 SSPFRNVDHREQMLSLDNVFDTEQLAGWLDRT---------PAKTYLTELKIDGASINLL 117 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDF 198 Y G+ A RGDG +GED++ R + IP L +PE++E+RGEV+I DF Sbjct: 118 YIDGQLELALTRGDGTTGEDITHNARTLDDIPDTLHGTDEFPVPELVEIRGEVFIDVEDF 177 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 A+N + A G K +ANPRNAA+G +R+ N D R L HG+G Q++ Sbjct: 178 AAMNAQRQAEGLKMFANPRNAAAGAMRQKNSADTAKRPLKLICHGIGAREGFSPASQHDA 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 + + G PV+ +Q ++ + + R +++DGLV KVD Q +LG Sbjct: 238 YRAIAAWGLPVSPYTKQVHSAKEVQQQVEYWGNHRHDAAHEMDGLVVKVDSLEEQLELGH 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN-- 375 +R+PRW I++K+ ++A T L +I + IGRTG TP A +EP + G+ ++ ATLHN Sbjct: 298 TSRAPRWAIAYKYPPEEAMTTLHNIRVGIGRTGRATPYAVMEPKYVAGSTVSMATLHNPT 357 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 E + KG + +GD + +++AGEVIP+V+ + ++R +PF F +FCP Sbjct: 358 EAHRKG-------------VMLGDTITIRKAGEVIPEVLGPVEDKRTGAERPFLFSTFCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C +R+ K G A RC C Q RL + SR AF+I+ LG++ Sbjct: 405 ECGTRLAPS---KVGD--ADWRCPNTQYCPGQLHTRLTYLASRKAFDIDALGEKGAYDLI 459 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 S + +++F L T+ G + S L + + + L R + Sbjct: 460 HS----GVLADESELFDLSAEDLEKTSSYATKAGKLNKSGETLLEKLQSAKEADLWRVLV 515 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFA----QEINNI------IAHNNDDWLSLIRVPLVG 605 +L IRHVG A++LAK++ S ++ A +E+ I IA + DW ++ + Sbjct: 516 ALSIRHVGPTAAKALAKHFESVEDIASASVEEMAGIDGVAETIAESISDWFTVDWHRRIV 575 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 D A A V +Q E + G + S+ +E +V TG+L+ R Sbjct: 576 DRWAAAGVRMHQ-------------EAGEASGEADGVDSALLEGLTIVVTGSLEDFDRTA 622 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + G + +S+KTD ++ G+ GSKL+KA+ LGV +++E F LL+ Sbjct: 623 AKEAIEARGGKAAGSVSKKTDFLVAGEKAGSKLKKAEDLGVPVLDEAGFKELLE 676 >gi|161760708|ref|YP_062356.2| NAD-dependent DNA ligase LigA [Leifsonia xyli subsp. xyli str. CTCB07] Length = 755 Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 242/774 (31%), Positives = 369/774 (47%), Gaps = 101/774 (13%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR E L I D YY+ ++ D EYD + RR + + P+L +S+D P Sbjct: 13 ARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPEL-QSQD--SPTQ 69 Query: 77 KIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +GG +LF V H+ LSL+ +++ E + +I R ++ D + E KID Sbjct: 70 TVGGRAQTTLFAPVEHAERMLSLDNVFSFEAFEAWAAKIERDAGRRVD----YLCELKID 125 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--IPEIIEVRGEVYI 193 G I +RYE G V AA RGDG GEDV+ IR IP I + LS P ++EVRGEV+ Sbjct: 126 GLAINLRYENGVLVTAATRGDGVVGEDVTENIRHIPAITQRLSGAGPFPPVVEVRGEVFF 185 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRL----NPT------DITRYLNFFVHGL 243 F LN A G + +AN RNAASG LR+ NP D L VHG+ Sbjct: 186 PVAKFEELNANQQAAGERVFANARNAASGSLRQKAEGKNPAQRRLMRDRLGRLRMLVHGI 245 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G Q + + +R G P + R T + R T+ ++IDG+V Sbjct: 246 GAWPNPPVATQSGVYELLRSWGLPTSAHGRVFGTVQEAADFIGRSAERRDTVEHEIDGVV 305 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVDE L +LG +R+PRW I++K+ +Q +T+LLDI + +GRTG TP A +E V + Sbjct: 306 IKVDELVLHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFAVMEKVKV 365 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ + ATLHN+D +K + + +GD V++++AG+VIP+V+ +V R Sbjct: 366 AGSEVRQATLHNQDVVK-----------AKGVLIGDTVVLRKAGDVIPEVLGPVVELRDG 414 Query: 424 DAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + F+ P+ CP C + L P K G + RC C AQ R++H SR + Sbjct: 415 TEREFAMPTDCPECGT----PLAPAKEGDI--DLRCPNAEFCPAQVRGRVEHIGSRGGLD 468 Query: 483 IEGLGK------QQLDFFFKSEDPA----FSIRIPADIFTLQ---RRQQT-----STTKI 524 IE LG+ Q F ++ P F +R+ D+F ++ R +T + T + Sbjct: 469 IEALGEVAAAALTQPRFPERAPLPTEAGLFGLRL-EDLFPIEVVVRDSETGLPKLTETGV 527 Query: 525 ENI--------------------------LGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 E + + S L ++ R L R + SL Sbjct: 528 EKVDAPFRRRRQKKDGAFDPEAEAFDGDEIAVPSKSAIELLANLRAARTKPLWRILVSLN 587 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG AR+LA ++ S ++ I A + D+ L V VG I+A A++ +++ Sbjct: 588 IRHVGPVAARALADHFGS-------LDAIRAASRDE---LAAVDGVGGIVADAVLSWFEI 637 Query: 619 PRNICAVEALLKE-------VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + VE ++ P GR + + +V TG+L+ R AQE + Sbjct: 638 GWHCEIVENWARDGVQFAIPGHPGPGRADTG-GGVLSGLTVVATGSLEGYTREAAQEAIV 696 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 G ++ +S+KTD + G GSKL KA++LGV++++ QF L++Q L Sbjct: 697 AAGGKAASSVSKKTDFVAAGPGAGSKLAKAEELGVRVLDAAQFTILVEQGPGAL 750 >gi|37520296|ref|NP_923673.1| NAD-dependent DNA ligase LigA [Gloeobacter violaceus PCC 7421] gi|81710991|sp|Q7NMN8|DNLJ_GLOVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|35211289|dbj|BAC88668.1| DNA ligase [Gloeobacter violaceus PCC 7421] Length = 668 Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 221/710 (31%), Positives = 356/710 (50%), Gaps = 59/710 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE+ + L +L Y YY P + D+ YD R + +P+L P+ Sbjct: 9 IEEHTRTLRALLHRWGY---AYYVLDAPEVSDAIYDQHYRELVDLESRYPELV---SPDS 62 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + VTH +P SLE ++ +L K+ R+ R + F E K Sbjct: 63 PTRRVGERPASAFVSVTHRVPMFSLENAFSQAELEKWGERLLR----AIGPGLEFICELK 118 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 IDG+ + YE G V A RGDG GE+++ +R I IP ++L +P ++EVRGE + Sbjct: 119 IDGSATALSYEDGVLVRGATRGDGVEGEEITQNLRTIRAIPLKLLGGEVPAVLEVRGEAF 178 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG--LGKTSEI 249 I +++F +N E A G K +ANPRNA +G LR+L+ + +R L FF + G+ Sbjct: 179 IPRDEFERINQERQAAGEKLFANPRNACAGTLRQLDSRVVASRRLGFFAYTAHYGR---- 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A+ Q+E L ++ GF VN + ++ ++ R LPYD DG+V KV+ F Sbjct: 235 -AESQWEALAELESHGFRVNPHRSLCRDLAEVRTFCEHWENHRHELPYDTDGVVVKVNAF 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+++G ++ PRW I+ K+ ++ ST + I +Q+GRTG LTPVA L+PV + G ++ Sbjct: 294 DHQREVGFTSKFPRWAIAFKYPAEEKSTVVEAIAVQVGRTGALTPVAELQPVAVAGTTVS 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN+D I+ L D+RVGD V++++AGE+IP+VV +I R P+A P+ Sbjct: 354 RATLHNQDRIESL-----------DVRVGDTVIIRKAGEIIPEVVRVIGELRPPEAVPYV 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP CP C + VVR AA RC C A +L H+ + A I+G+G + Sbjct: 403 FPQTCPECGTAVVRAPGE------AAVRCPNP-RCPALIRGKLGHWCA--ALEIDGIGDK 453 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + + AD++ L S ++ + G S + + +++ Sbjct: 454 LIARLVS----LGLVHTVADLYEL------SAEQLAGLERLGARSAAKIVEQLDRSHRQP 503 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R ++ LG+RH+GA ++ LA+ + S A+ IA SL G+ +A Sbjct: 504 WSRVLYGLGLRHIGASVSVELARAFASADALARADLAAIA-------SLYG---FGEELA 553 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 +++VE++ N +E L G SS + V TGTL + R + Sbjct: 554 RSVVEWFAQAENRALLERLKAHGLQLAGGGRAAQSSALAGLTFVITGTLPTLSREECTAL 613 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G V++ +S +T ++ G+ GSKL +AQ L V +++EEQ L++ Sbjct: 614 IESHGGKVTSSVSSRTSYVVAGEKAGSKLARAQDLKVAVLDEEQLRALIE 663 >gi|182413875|ref|YP_001818941.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1] gi|254778152|sp|B1ZMR3|DNLJ2_OPITP RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|177841089|gb|ACB75341.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1] Length = 708 Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 221/708 (31%), Positives = 342/708 (48%), Gaps = 55/708 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L L EI+ HDD Y++ ++P I D++YDALK+ + F DP L + Sbjct: 45 RRLELLRVEIARHDDLYFRKAQPEISDADYDALKQELRELESRFGRRV-PRDPAA-LRDM 102 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + K H + LSLEK +R F + R K I + +EPK DG Sbjct: 103 GDDRVSGFPKARHRMRMLSLEKTTTESGVRAFDQALRRL--VKPPAEIAYVVEPKFDGLA 160 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSAC---IRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 I+ YE+G+ V RG+G G+DV+A IR +P PR+ P ++EVRGEV+++ Sbjct: 161 ISATYEEGRLVRLVTRGNGEEGDDVTAAAGRIRTLP--PRLAGAAWPRVVEVRGEVFLTF 218 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG- 253 +F +N GR +++PRN A G L+ L P D R L+ GLG A Sbjct: 219 AEFERINRGRRENGRPTFSSPRNLAVGTLKSLEPEDREVRQLDVVFFGLGAIDGHAAPAS 278 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q ++L+ + G P R+ ++ E+ RS L + IDG V K+D+ Q Sbjct: 279 QTQLLEWIAQWGLPSVEDARRVDSIDDAWRAVQELGGRRSHLAFPIDGAVIKLDDAVGQT 338 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 G +PRW I+ K+A + TR+ + +Q+GRTG++TPVA LEPV + GA IT ATL Sbjct: 339 AAGVSEVAPRWAIAFKYAPARVGTRVRGVALQVGRTGVITPVAELEPVALAGARITRATL 398 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN ++ D+RVGD V ++R GE+IP VV + +R + PF FP Sbjct: 399 HNASEME-----------RSDLRVGDFVWIERMGEIIPAVVAVDTAQRGTVSAPFVFPRD 447 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + +VR L+ A RCT C A+Q+ +++H+VS + I GLG ++ Sbjct: 448 CPGCGALLVRALDD------ANWRCTND-DCPARQVRKVEHYVSDEGVGIRGLGAASVEA 500 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 +S+ +R D++TL + T+ T++ + D+I + R L R Sbjct: 501 LVRSQ----RVREIPDLYTLTAAEVTAHTRLSA------AQAARVVDAIQRSRKAPLRRV 550 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND-DWLSLIRVPLVGDIIAQAI 612 I LG+ +G A +L + FA A +D + +R V + Sbjct: 551 IAGLGLPGIGPAGANALGARFADLPQFAA------ARESDLQQVEGLRPESVRALATALS 604 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEYVT 671 E Q + L + + +G + + K++VFTGTL + R +A E V Sbjct: 605 AERTQ--------QLLARLAAAGVGAQSATADAGTLAGKEVVFTGTLPTLSRRRATELVE 656 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + G V+ ++ T ++ G NP SKL +A LGV ++ E + L L + Sbjct: 657 EAGGRVADRVTAATWRLVAGRNPASKLHQATALGVPVIEEAELLRLAE 704 >gi|315649754|ref|ZP_07902837.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453] gi|315274728|gb|EFU38109.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453] Length = 670 Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 224/720 (31%), Positives = 364/720 (50%), Gaps = 70/720 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI-AHAFPDLARSEDPNGPLN 76 ++++ L E++ ++ YY +P++ D EYDAL + A+ A L P+ P Sbjct: 4 KEKMGKLITELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAETGVTL-----PDSPTQ 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR----FWQKKDDNSI---FFT 129 ++GGE+ H P SL+K NIE LR + R+ R + K N + + Sbjct: 59 RVGGEILKGFAPHRHLAPLWSLDKAQNIEQLRTWHDRVVRLVNDYNTKNPGNPLPNPCYA 118 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIE 186 LE K DG + + Y+ GK V A+ RG+G GE + ++ I ++P L IP IE Sbjct: 119 LELKFDGLTLNLTYQDGKLVQASTRGNGAVGEGILPQVKTIKSVP----LTIPYDEGTIE 174 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 V+GE ++ L++ ++ +P N RNAA+G LR L+P R LN + + +G Sbjct: 175 VQGEGIMN----LSVLEKYNQTAAEPLKNARNAAAGALRNLSPKVTAERKLNAYFYNVGY 230 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + I EM+ +R VN + F ++ +++ RS L Y IDG V K Sbjct: 231 SDGITFADHKEMMDFLRENRLKVNPYIFYFEQFDDVMEQLADIEKRRSELDYLIDGAVVK 290 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V +F +++ LG + PRW +++KF ++ +T L + +GRTG +TP+AR+EPV + G Sbjct: 291 VTDFRIREALGYTDKFPRWAVAYKFEAEETTTVLQSVTWNVGRTGKITPLARVEPVELAG 350 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + N TL+N G + R +G RV ++R+ +VIP+++ + E D Sbjct: 351 VTVQNCTLNN---------IGDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEEN--DG 399 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIE 484 + FP CP C + + AH C C Q + R+ HF SRDA +IE Sbjct: 400 EEILFPVECPSCGFPLEQR---------GAHLFCNNKTGCKPQIVARITHFASRDAMDIE 450 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 + ++ +R PAD++TL S K+E FG+ NL D+I K Sbjct: 451 TFSDKTAIQLYEE----LGVREPADLYTLSF---DSLVKLER---FGEKKAQNLLDAIEK 500 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + L F+F+LGI + G + LA +Y ++++ ++A ++ L+ +P V Sbjct: 501 SKERDLASFLFALGIPNTGKSTTKMLADHY-------RDLHRVMAATAEE---LVELPDV 550 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKI 661 G I+A +I ++ +P ++E +L V K VSS+ K +V TGTL + Sbjct: 551 GGIVADSIAGYFADPFAQASIEKMLSLGVQAQAPEAPKPVSSDSYFSGKTVVLTGTLHLL 610 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLLQQ 720 R +A E + LGA V+ +S+KTD++I G+ GSKL KAQQLG+ I+ +EE+F+ LL + Sbjct: 611 TREEATERLEALGAKVTGSVSKKTDLLIAGEKAGSKLAKAQQLGIDILEDEEEFVRLLNE 670 >gi|284929444|ref|YP_003421966.1| DNA ligase, NAD-dependent [cyanobacterium UCYN-A] gi|284809888|gb|ADB95585.1| DNA ligase, NAD-dependent [cyanobacterium UCYN-A] Length = 682 Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 219/712 (30%), Positives = 361/712 (50%), Gaps = 49/712 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K + L + + + Y+ ++ I+ DS YD L R+ + P+L S+ + Sbjct: 7 QKTIIKLRKHLQQANYAYHVLNESIMEDSVYDQLYRQLYNLEQRNPNLISSDSVT---QR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + L V H IP SLE +N+++L + R ++ + +++ I + E KIDG+ Sbjct: 64 VGEKPALHFNSVKHDIPLYSLENAFNLQELEAWENRNQKYLKSQENQLIKYIAELKIDGS 123 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKN 196 +++ YE G RGDG GED++ IR I +IP L+L+ P I+ V GE ++ + Sbjct: 124 ALSLTYENGLLTRGLTRGDGIVGEDITQNIRTIFSIPLHLNLDDPPSIMHVNGEAFLPLD 183 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 +F +N + G+ +ANPRNAA+G LR+L+ ++ R L FF + L + K Q+ Sbjct: 184 EFKRINKQKQKEGKSLFANPRNAAAGTLRQLDSKIVSERKLQFFAYSL-YADNLDIKSQW 242 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + L+ ++ GF VN R + + +Y+NE KS + LPY DG+V K++ LQK+L Sbjct: 243 DTLKFLQECGFLVNPYYRLCKSLDTVTNYFNEWKSAKKHLPYMTDGVVIKINSHILQKEL 302 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 R PRW I+ K+ ++ ST + DI GRTG +TP+A + PV +GG ++ ATLHN Sbjct: 303 AYTQRFPRWAIALKYPAEEISTVVEDIIFNTGRTGAVTPMAVMNPVLLGGTIVRKATLHN 362 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I L I +GD V +++AGE+IP+V+ ++ RH + F CP Sbjct: 363 IDRIAQL-----------GICIGDTVTIRKAGEIIPEVIRVLKTLRHHKTKVFQISERCP 411 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C S +V N A RC +C A L H+ SRDA +I GLG++ +D Sbjct: 412 KCNSMLVSFSNE------AVVRCINN-SCPAILKGNLIHWSSRDAVDISGLGEKIIDLLI 464 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 S SI +D++ L ++ + N+ G S NL SI + S + ++ Sbjct: 465 -SNGLVNSI---SDLYHLNFQE------VSNLERMGIKSAENLIKSIESSKTKSWTKVLY 514 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGI HVG A L + + S Q Q + +L+ + +G +A +I + Sbjct: 515 GLGIHHVGYTTAILLTENFSSVQQLLQA----------PYDTLVTIKGIGKEVAYSIRSW 564 Query: 616 YQNPRNICAVEALLKE----VSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQRHKAQEYV 670 + N + L K + ++G ++ +I N V TG+L ++R + + + Sbjct: 565 FSLEENQKLISELDKNGFVLENKNLGINQNKPDKQIFFNITFVITGSLNTLKRSEIKNLI 624 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 G V +++KT+ I+VG+NPGSKL + +L + +NE FL +L+ N Sbjct: 625 ENFGGKVVNSVTKKTNYILVGENPGSKLAEGMKLNIIRLNETDFLRILKDAN 676 >gi|317014035|gb|ADU81471.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Gambia94/24] Length = 656 Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 227/699 (32%), Positives = 355/699 (50%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY +PI+ D+ YD L + A P+ ++ N P K+G Sbjct: 18 LSHH---YYNLDEPIVSDAVYDELYQELKAYEEENPNRIQA---NSPTQKVGATATNEFS 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQNELQAWLQRILKAYPNAS-----FVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 + A RG+G GE V+ + I IP S+ IE+RGEV I+K DF ALN E + Sbjct: 127 LISATTRGNGLEGELVTNNAKHIANIPH--SIAYSGEIEIRGEVIIAKEDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V VDE +QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVDELDIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA++T ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVTKATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + D+V+V R+G+VIPK++ + R Q P CPIC ++ + Sbjct: 358 ------KKNIMLNDKVVVIRSGDVIPKIIKPLETYRDGSQQKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ + I Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK----LIV 458 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 459 NALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G +A ++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLKKSEAEFLEM---EGFGVEMAHSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL S ++ SS NK +V TGTL K ++ AQ + LGA +++ + Sbjct: 557 IRSLFDLLNPKSSDTAEEKQKSSSVFSNKTIVLTGTLSKPRQEYAQ-ILENLGAKIASSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KTD +I G+N GSKL A++ GV ++NEE+ L L++ Sbjct: 616 SAKTDFLIAGENAGSKLALAKKHGVSVLNEEELLKRLKE 654 >gi|210134818|ref|YP_002301257.1| NAD-dependent DNA ligase LigA [Helicobacter pylori P12] gi|254781345|sp|B6JLJ9|DNLJ_HELP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|210132786|gb|ACJ07777.1| DNA ligase [Helicobacter pylori P12] Length = 656 Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 226/699 (32%), Positives = 356/699 (50%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY + I+ D+ YD L + A P+ ++ N P K+G Sbjct: 18 LSHH---YYNLDESIVSDAVYDELYQELKAYEEKNPNDIQA---NSPTQKVGATTTTPFS 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + F PK+DG + + Y GK Sbjct: 72 KNPHLMRMWSLDDVFNQSELQAWLQRILKVYPNAS-----FVCSPKLDGVSLNLLYHHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE V+ + I IP ++ + IE+RGEV ISK DF ALN E + Sbjct: 127 LVSATTRGNGLEGELVTNNAKHIANIPHFIAYDGE--IEIRGEVIISKEDFEALNKERLE 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E +QK+LG +SP++ Sbjct: 243 FGAIQYLSLNKNHQEIEESYHTLIKEREGFFALLDGMVIVVNELGIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA++ ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAMVNRATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ + I Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK----LIV 458 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 459 NALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LA+Y L N++ + ++L + G +A ++V FY N Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMAHSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + + ++ SS NK +V TGTL K ++ AQ + LGA +S+ + Sbjct: 557 IRSLFDLLNPKNSDMAKEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKISSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KTD +IVG+NPGSKL A++ GV ++NEE+ L L++ Sbjct: 616 SAKTDFLIVGENPGSKLALAKKHGVSVLNEEELLKRLKE 654 >gi|310778043|ref|YP_003966376.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926] gi|309747366|gb|ADO82028.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926] Length = 677 Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 221/697 (31%), Positives = 367/697 (52%), Gaps = 60/697 (8%) Query: 39 SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF-KVTHSIPTLS 97 ++ ++ D EYD L + + I P++ +D P ++G ++ + F KV H P LS Sbjct: 26 NESLVSDIEYDKLLKELEEIEKKHPEI---KDELSPTRQVGSSLSDTKFQKVEHKKPMLS 82 Query: 98 LEKIWNIEDLRKFITRIYRFWQK-KDDNS---IFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L +NI+D+ F RI + K K+D S + LE K+DG I++ Y+ GK V Sbjct: 83 LSNTYNIKDVEDFHQRIDKILGKLKEDESKKITDYALELKLDGVSISVHYKNGKLVKGVT 142 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GEDV+ I I +IP+ L NI IE RGE+ + ++F LN G + Sbjct: 143 RGDGTVGEDVTENIMEIKSIPKYLKENID--IEARGEIVLPLSEFKKLNQIRYDKGEDLF 200 Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAASG LR+L+ + R L+ + + L ++ + E ++ + +G Sbjct: 201 ANPRNAASGTLRQLDSKIVAERNLDCYFYFLADCDKLGIEKHSESMEFLEKVGLKTTGVC 260 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 ++ + ++ R L Y+ DGLV KV+ L +LG +SPRW IS+KF Sbjct: 261 DLCSSIEELEDRIRYWENNRGVLDYETDGLVIKVNMVELWDKLGATTKSPRWAISYKFPA 320 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 KQ +T L +I Q+GRTG +TPVA LE V + G+ + A+LHN D +++R Sbjct: 321 KQVTTTLKNITWQVGRTGKVTPVAELEEVEVSGSKVKRASLHNFD---------EIIR-- 369 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 +D+++GDRV +++A E+IP+VV ++ R + + PS CP C + + R+ Sbjct: 370 KDVKIGDRVFIEKAAEIIPQVVKVVKEARTGEEKEIMPPSVCPECGTELGREEG------ 423 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 + RC C A+ ++++FVSRDA NI GLGK+ ++ F + I+ +DI+ Sbjct: 424 LIDLRCPNE-KCPAKVRGQIEYFVSRDAMNINGLGKKIVEKFIE----IGKIKDVSDIYD 478 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L + +++++ G SV NL SI + + ++SLGI HVG +A LAK Sbjct: 479 LHLYKD----ELKSLEKMGAKSVENLLKSIEDSKKREYPKSLYSLGIPHVGKFLASLLAK 534 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL---- 628 ++ I+ + + +D L+ + VG +A+++ ++N + + +E L Sbjct: 535 E-------SKNIDKLAQMSIED---LLEIDGVGKKVAESVYGVFRNKKFLERLEKLKNYG 584 Query: 629 ----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 +KEV + + + E ++K + TG L+ R +EY+ LG + +S+K Sbjct: 585 VNFKIKEVEDTA----EFFNEEFKDKTFLATGKLKHFTREGIKEYIESLGGKNLSGVSKK 640 Query: 685 TDIIIVGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQ 720 D +IVG+ GSKL+KA++L VKI+ E +FL + ++ Sbjct: 641 LDYLIVGEKAGSKLKKAEELKTVKILTESEFLEMTEK 677 >gi|148381215|ref|YP_001255756.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 3502] gi|153931904|ref|YP_001385590.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. ATCC 19397] gi|153935840|ref|YP_001388996.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. Hall] gi|166215576|sp|A7FYL7|DNLJ_CLOB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215577|sp|A5I6Z7|DNLJ_CLOBH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148290699|emb|CAL84829.1| DNA ligase [Clostridium botulinum A str. ATCC 3502] gi|152927948|gb|ABS33448.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 19397] gi|152931754|gb|ABS37253.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. Hall] Length = 664 Score = 320 bits (820), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 213/704 (30%), Positives = 361/704 (51%), Gaps = 58/704 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +E++ + YY P I D EYD LK I ++ P P ++ Sbjct: 6 EKMKELVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKKTEVTL---PYSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132 G ++ K TH SL+K N+E L ++ R + ++ + S + + + Sbjct: 62 GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121 Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + Y E G + +A RG G GED++A I+ I T+P L + +IEV GE Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNNHVIEVHGEA 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 ++K F +E + P N RN A+G LR L+ + R L+ F + +G Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPE 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K EM+ ++ +G P + +++ + ++SIR L YDIDG V VD+ Sbjct: 236 FKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIVVDDIK 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG + Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+N D IK +++++G +VLV+R+ +VIP+++ +V E +++ Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESKEIQA 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +V++ + C L+C Q ++ + HF SR+A NI G ++ Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKT 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ D I+ AD++ +++ + + K F D NL D+I +N L Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNSKNCDL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 FI++LGI +VG + A L + ++ N I L+ VP VG+I+A+ Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I +F+++ + I +E LL E+ + +K +V TG+L R + ++ + Sbjct: 556 SIYDFFEDEKVISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGEIKDKL 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659 >gi|170761523|ref|YP_001788587.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A3 str. Loch Maree] gi|254781295|sp|B1L1H3|DNLJ_CLOBM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169408512|gb|ACA56923.1| DNA ligase, NAD-dependent [Clostridium botulinum A3 str. Loch Maree] Length = 664 Score = 320 bits (819), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 214/704 (30%), Positives = 360/704 (51%), Gaps = 58/704 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +E++ + YY P I D EYD LK I ++ P P ++ Sbjct: 6 EKMKELVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKKTEVTL---PYSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132 G ++ K TH SL+K N+E L ++ R + ++ + S + + + Sbjct: 62 GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121 Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + Y E G + +A RG G GED++A I+ I T+P L + IIEV GE Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNNHIIEVHGEA 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 ++K F +E + P N RN A+G LR L+ + R L+ F + +G Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGSE 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K EM+ +R +G P + +++ + ++SIR L YDIDG V VD+ Sbjct: 236 FKNYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIREELDYDIDGAVIVVDDIK 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG + P+W I++KF K+ +TRLLD++ +GR+G +TP A LEPV +GG + Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTRLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+N D IK +++++G +VLV+R+ +VIP+++ + E +++ Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VAEESLEESKEIQA 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +V++ + C L+C Q ++ + HF SR+A NI G ++ Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKT 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ D I+ AD++ +++ + + K F D NL ++I +N L Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLEK------FKDKKSQNLINAIQNSKNCDL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 FI++LGI +VG + A L + ++ N I L+ VP VG+I+A+ Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I +F+++ + I +E LL E+ + +K +V TG+L R + ++ + Sbjct: 556 SIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGEIKDKL 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659 >gi|255595065|ref|XP_002536222.1| DNA ligase, NAD-dependent, putative [Ricinus communis] gi|223520412|gb|EEF26161.1| DNA ligase, NAD-dependent, putative [Ricinus communis] Length = 491 Score = 320 bits (819), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 198/534 (37%), Positives = 296/534 (55%), Gaps = 53/534 (9%) Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF- 250 ++K DF +N E+ A G + ANPRNAA+G LR+L+P +R L F +G G E F Sbjct: 1 MNKADFALVNAELAAKGEETKANPRNAAAGSLRQLDPKVTASRRLRFLAYGFG-VCEGFE 59 Query: 251 -AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A Q E L + +GF +++ GI++++ +K+ R+ LP+DIDG+VYKV+ Sbjct: 60 PADTQEEQLASLVQMGFEISHTNTVVKGAAGILAHFESVKATRADLPFDIDGVVYKVNSK 119 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q +LG +R+PRW I+ KF ++A TR + I+ Q+GRTG LTPVARLEPV +GG +T Sbjct: 120 KQQDELGWNSRTPRWAIALKFPPEEAVTRCIAIEPQVGRTGPLTPVARLEPVFVGGVTVT 179 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNE +V R +DIR+GD V+V+RAG+VIP++V + R + Sbjct: 180 NATLHNEQ---------EVHR--KDIRIGDHVIVRRAGDVIPEIVRSLPERRDGTETVYY 228 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + V ++ + AAHRCTGGL C+ Q+L + HF SR A +IEGLG+ Sbjct: 229 TPAHCPTCGTPVHKEED------TAAHRCTGGLKCADQRLYAITHFASRLALDIEGLGEG 282 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + + A I P+ +F L Q I + G G S L +I + R Sbjct: 283 TVTKLVE----AGLIERPSHLFALLPSQ------IAALPGEGKNSAAKLVAAIERTRAPE 332 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI++LGI +VG A++ A+++LS+ F + + D VG A Sbjct: 333 LNRFIYALGIPNVGENSAKNFARHFLSFAAFKAATADELQALED----------VGPTTA 382 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRH 664 ++ F++N N VEAL++ V P K+V+ +++ L V TGTL + R Sbjct: 383 ASVRAFFENADNAAEVEALVECVQP------KDVTVSTDSQSLTGLTFVITGTLSR-DRE 435 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + G VS +S+KT+ ++ G G+KL KAQ++GV I++E F LL Sbjct: 436 SFKATIEAAGGKVSGSVSKKTNYLLAGAEAGTKLAKAQEMGVTILDEAAFDALL 489 >gi|325002847|ref|ZP_08123959.1| NAD-dependent DNA ligase LigA [Pseudonocardia sp. P1] Length = 615 Score = 320 bits (819), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 187/573 (32%), Positives = 295/573 (51%), Gaps = 32/573 (5%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQAR+ + L E++ H YY P++ D ++D L + A P LA P P Sbjct: 7 EQARERHAQLAAEVADHQFRYYVLDAPVVSDGQFDELWHELLGLEDAHPGLAT---PQSP 63 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K+GG + H LSL+ ++ +DLR + R+ R + ++ + E KI Sbjct: 64 TQKVGGTFSTEFTAHDHLERMLSLDNAFSADDLRTWQERVTR----EVGENLHYLCELKI 119 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGE 190 DG + + YE G A RGDG +GED++ +R + +P L+ +P ++EVRGE Sbjct: 120 DGLAVNLLYEGGTLTRALTRGDGRTGEDITLNMRTLGEVPVTLTGTDEFPVPALVEVRGE 179 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249 VY DF LN ++ G++P+ANPRN A+G LR+ +P +R L HG+G+ Sbjct: 180 VYFRLEDFDRLNASLVEAGKEPFANPRNTAAGSLRQKDPRVTASRNLRLICHGIGRRDGF 239 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q + + G P++ R +V + R + ++IDG+V KVDE Sbjct: 240 TPVTQSQAYDALVAWGLPISPRTRVLRGIEKVVEFVEHWGEHRHDVEHEIDGVVVKVDEV 299 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +R PRW I++K+ +QA+TRLLDI + +GRTG +TP A +EPV + G+ + Sbjct: 300 ALQRRLGATSRFPRWAIAYKYPPEQATTRLLDIRVNVGRTGRVTPFAVMEPVKVAGSTVE 359 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN D ++ R G + +GDRV++++AG+VIP+V+ + + R + F Sbjct: 360 MATLHNADEVR---------RKG--VLIGDRVVIRKAGDVIPEVLGPVTDVRDGSERAFV 408 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C + +V+ K G + RC +C AQ ERL H R +F+IEGLG + Sbjct: 409 MPTHCPECGTALVQQ---KAGDV--DRRCPNARSCPAQLRERLFHVAGRGSFDIEGLGYE 463 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 S + D+F+L + T N G V+ L ++ ++ Sbjct: 464 AAVALLTS----GVLTDEGDVFSLTEDELLRTDLFRNQKGELTVNGRKLLTNLEAAKDRP 519 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ 582 L R + L IRHVG A++LA+ + S + Q Sbjct: 520 LWRVLVGLSIRHVGPTAAQALAREFGSMEALEQ 552 >gi|297183498|gb|ADI19628.1| NAD-dependent DNA ligase (contains brct domain type II) [uncultured delta proteobacterium HF0770_45N15] Length = 655 Score = 320 bits (819), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 210/684 (30%), Positives = 355/684 (51%), Gaps = 56/684 (8%) Query: 31 HDDCYYQYSKPIILDSEYDALKRRCDAI-AHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 HD Y + D EYD L + +A+ A LA PL + + Sbjct: 16 HD---YYCDVATVPDVEYDGLVSQLNALEAQVGESLANV----SPLLQFAANQQEAFPSR 68 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H+IP LSL +++ +++ ++ + + +++ +T E KIDG I++ YEKG+ Sbjct: 69 RHAIPMLSLGNLYSEQEILEWDENLRK---PLGVSTLSYTCELKIDGLAISLIYEKGRLA 125 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 A RGDG +G++V+A +R IP +P ++L P +EVRGEV++SK+ F LN Sbjct: 126 TAVTRGDGTAGDEVTANLRTIPELP--VALPEPLDLEVRGEVFLSKDAFEKLNQRRATQN 183 Query: 210 RKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 + NPRNAA+G LR L+ ++++R L FV+ S I L ++ L FPV Sbjct: 184 EPLFRNPRNAAAGTLRTLDTSEVSRRRLGVFVYAC--VSGIETPQHSAALDQLVKLDFPV 241 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 N A + ++ Y + + S LPY +DG+V KVD +S Q+QLG A+SPRW ++ Sbjct: 242 NPERHFAASITEVLEYCRKWGTHHSELPYAVDGVVLKVDAYSTQRQLGVTAKSPRWAVAC 301 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 KF+ +QA +R+ I++ +GRTG++TP+A ++PV + G ++ ATLHN + ++ L Sbjct: 302 KFSTEQAESRIRGIELGVGRTGVITPIALIDPVELNGTMVGRATLHNFEQVRNL------ 355 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 D+ +GD V +++ GE+IPK+V + + R P+A P P CP C +V + Sbjct: 356 -----DLHLGDLVTLEKGGEIIPKIVSVARSARFPNALPILPPETCPACDDKVSHE---- 406 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 G++ CT C Q ER+ HF SR A ++E +G + + +R PA Sbjct: 407 DGEV--DWLCTNP-DCPDQVRERVLHFCSRRALDVETIGPALVVQLLERG----LVRTPA 459 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D+F L + + + G S N+ + + ++ L + LGI +VG + AR Sbjct: 460 DLFRL------NVEALSQLERMGKKSAENVVSGLERSKHCRLAALLHGLGIPNVGEKTAR 513 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 LA+ + + Q + H L+ + +G +IA ++ F+ + R V+ L Sbjct: 514 LLARRFGTLQTL-----QTVQHEQ-----LLAIDEIGPVIANSVASFFADSRQQALVDDL 563 Query: 629 LK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 L V P + + K +V TG L + R ++ + + GA +++ +S+KTD+ Sbjct: 564 LAVGVCPQEEAILEADNPHFSGKMVVLTGALSE-ARDVWKQRLEEAGANITSAVSKKTDL 622 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNE 711 ++ G+N GSKLEKA + G+++++E Sbjct: 623 VLAGENAGSKLEKAHKFGIQVIDE 646 >gi|332671254|ref|YP_004454262.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484] gi|332340292|gb|AEE46875.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484] Length = 834 Score = 319 bits (818), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 235/797 (29%), Positives = 373/797 (46%), Gaps = 126/797 (15%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QAR S L + I YY P D++YDA R + +P L P P Sbjct: 29 QARHRWSELVERIDADQFAYYVLDAPPSSDADYDARLRELAELEERYPGLV---TPQSPT 85 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + H LSL+ ++ ED+ + R R + + E KID Sbjct: 86 QRVGGTFSTDFATAAHVQRMLSLDNAFSDEDVAAWADRALRDLGAA---APHYLCELKID 142 Query: 136 GTMITIRY------EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIE 186 G I + Y E + V AA RGDG +GEDV+ +R I ++P VL + P++IE Sbjct: 143 GLAIALLYQRPRPGEPARLVRAATRGDGRTGEDVTLNVRTIASVPDVLGGDPATHPDVIE 202 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 +RGEV++ F LN+ +A G+ P+ANPRNAA+G LR+ +P +R L + HG+G Sbjct: 203 IRGEVFLPVEAFARLNEAQVAAGKAPFANPRNAAAGSLRQKDPRVTASRPLGMYAHGIGA 262 Query: 246 TSEIFAKG-----QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPY 297 A G Q ++ + G P ++ R + G+ ++YY E R + + Sbjct: 263 FERGSAGGPGIERQSQVYDLLASWGVPTSSHTRVVDGLDGVREMIAYYGEH---RHDVEH 319 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG+V KVDE LQ++LG +R+PRW I++K+ ++ TRLL I++ IGRTG TP A Sbjct: 320 EIDGVVVKVDEIDLQRRLGATSRAPRWAIAYKYPPEEVVTRLLAIELGIGRTGRATPFAV 379 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 +EPV + G+ + ATLHN+D ++ + +RVGD V++++AG+VIP++V Sbjct: 380 MEPVFVSGSTVRQATLHNQDVVRA-----------KGVRVGDMVVLRKAGDVIPEIVGPA 428 Query: 418 VNERHPDAQ----PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 + PD + P+ CP C + +R + L RC +C AQ R++ Sbjct: 429 --PQAPDDTVERVEWHMPADCPECGT-PLRPMREGDVDL----RCPNAESCPAQVRGRVE 481 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFS-IRIPADIFT-------------------- 512 H SR AF+IE LG+ + + P+ +R AD+F Sbjct: 482 HIGSRGAFDIEALGEVTAAALTQPDVPSTPPLRTEADLFALVGYGPDAPQDERARVRDAS 541 Query: 513 -----------------LQR-------------RQQTSTTKIENILGFGD---------- 532 L R R+Q + +K E D Sbjct: 542 LRTLGAIEVVVRDPETGLPREDEDGNVRRRAPFRRQLTWSKAERARAEADGRELPDWEPS 601 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ--EINNIIAH 590 + L D ++ + L R + +L IR+VG AR+LA+ + S + E + + A Sbjct: 602 TAARTLLDQLDLAKEKELWRVLVALSIRNVGPTAARALAQEFRSMAALREVVEGDPVAAA 661 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE-- 648 L V VG IAQ++V+++ P + V+A + V+ +E Sbjct: 662 ER-----LSGVDGVGPTIAQSLVDWFATPWHAAVVDAWAAAGVRMADTAGEQVARTLEVA 716 Query: 649 -------NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 +V TG L++ R +A+E + G + +S+KTD ++VG+N GSK KA Sbjct: 717 DEGGTVRGLTVVVTGGLERFSRDEAKEAILSRGGKAAGSVSKKTDFVVVGENAGSKETKA 776 Query: 702 QQLGVKIMNEEQFLFLL 718 ++LG++I++E F LL Sbjct: 777 RELGLRILDEAGFEALL 793 >gi|113475951|ref|YP_722012.1| NAD-dependent DNA ligase LigA [Trichodesmium erythraeum IMS101] gi|123160812|sp|Q112N5|DNLJ_TRIEI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110166999|gb|ABG51539.1| DNA ligase, NAD-dependent [Trichodesmium erythraeum IMS101] Length = 774 Score = 319 bits (818), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 233/803 (29%), Positives = 378/803 (47%), Gaps = 139/803 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 L +EQ + L QE Y YY +PI+ D+ YD L R + +P L S+ Sbjct: 5 TLEVEQYTQNLREKLQEAGY---SYYVLDQPIMEDAVYDHLLRELQELESQYPQLIVSDS 61 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK--------- 121 P ++G + V H+IP SLE +NI++L+ + R WQ++ Sbjct: 62 PT---QRVGEKPATKFVSVKHNIPLYSLENAFNIQELKSWQER----WQRQTLLENQRLT 114 Query: 122 ---------------DDN----------------------SIFFTLEPKIDGTMITIRYE 144 DN S+ + E KIDG+ + + YE Sbjct: 115 LPLRGEVKIKNSIDESDNFSTVNSLAPVITGSNFDEIDLASVDYICELKIDGSALALTYE 174 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALND 203 G V A RGDG GED++ ++ I +IP L + N P ++EVRGE ++S N F +N Sbjct: 175 NGLLVRGATRGDGIMGEDITQNVKTINSIPLKLKVDNPPLLVEVRGEAFLSINVFENINA 234 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL----GKTSEIFAKGQYEML 258 E +G +ANPRNAA+G LR+L+ + R L+FF + L +++ + Q + L Sbjct: 235 EREKIGEIIFANPRNAAAGTLRQLDSKIVAKRRLDFFAYTLYLEENESNFLQFYTQSQCL 294 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 + ++ LGF VN + ++ + + +YY R LPY DG+V K++ SLQ++LG Sbjct: 295 ELLKKLGFKVNPNGQVCSSLNEVEAYYQYWDKQRENLPYLTDGVVVKLNSLSLQEKLGFT 354 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 + PRW I+ K+ ++ T + + +Q+GRTG +TPVA L+PV + G + A+LHN D Sbjct: 355 QKYPRWAIALKYPAEEIPTIVQGVTVQVGRTGAITPVAELKPVQLAGTTVQRASLHNSDR 414 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 + LD + +GD V+V++AGE+IP+VV ++ R AQ F P+ CP C Sbjct: 415 LAELD-----------LHIGDTVIVRKAGEIIPEVVRVLPELRPKKAQRFQMPTHCPECS 463 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +++ N A RC +C A L H+ SR A +I GLG++ + S Sbjct: 464 QPLIKPRNE------AVTRCIN-TSCPAILRGSLAHWASRAALDINGLGEKLVQQLVNS- 515 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 ++ AD++ L TS ++ G S L +++ + R ++ LG Sbjct: 516 ---GLVKSVADLYNLTMEDLTSLERM------GKKSANKLIEAMGTSKAQPWRRVLYGLG 566 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQE----------INNIIAHNNDDWLSLIRVPLVGDII 608 IRHVG A L + + + +Q I IA + W RVP +++ Sbjct: 567 IRHVGTVNAELLTQKFPTVAQLSQAKATDIETVHGIGPEIAQYVEQWF---RVPANQNLV 623 Query: 609 AQ------------------AIVEFYQNPRNICA---------VEALLKEVS-PSIGRHE 640 + + E +N+ A +E L++ + + Sbjct: 624 ERLKIAGVTMETKDSTSGMAKLTETVLAIQNLAARQNLVARQNLENLVERLKIAGVTMET 683 Query: 641 KNVSSEI--------ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 K+ +S++ K V TGTL ++R +A+ + G V++ +S KTD I+VG+ Sbjct: 684 KDSTSDVVEVQSGLLRGKTFVLTGTLPTMRRDEAKNLIQNAGGKVTSSVSSKTDFIVVGE 743 Query: 693 NPGSKLEKAQQLGVKIMNEEQFL 715 + GSKLEKA++LGVK ++E + L Sbjct: 744 DGGSKLEKAKKLGVKELSESELL 766 >gi|313836700|gb|EFS74414.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA2] gi|314929893|gb|EFS93724.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL044PA1] gi|314972321|gb|EFT16418.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA3] gi|328907750|gb|EGG27514.1| NAD-dependent DNA ligase LigA [Propionibacterium sp. P08] Length = 740 Score = 319 bits (818), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 236/763 (30%), Positives = 371/763 (48%), Gaps = 93/763 (12%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR + L Q I D YY P + D+ YD L + P+L RS P+ P Sbjct: 19 EARHRWTELAQRILDAQDAYYANDAPTMSDAAYDQLMVELKKVEDDHPEL-RS--PDSPT 75 Query: 76 NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ F V H LSL+ I+ ++L ++++R+ K F E KI Sbjct: 76 QRVGAPQRVTDFAPVEHLERLLSLDNIFTRDELSEWMSRVVAAVGKIPG----FLCELKI 131 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + Y G+ + A RGDG GEDV+A +R I IP+ L+ + +P ++EVRGEV+ Sbjct: 132 DGLAVDLVYRDGQLISGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFF 191 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 192 PVADFADLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTESRPLSMIVHGIGAVEGHDFP 251 Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q K+ G PV+ V A+ H V+++ E R + IDG+V KVD+ Sbjct: 252 SQGHAYDKLAQWGLPVSPYFKIVENADEVHDFVTHWGES---RDEASHQIDGVVIKVDDV 308 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + Sbjct: 309 CLQRKLGVTSRAPRWAIAYKYPPEEVNTELLDIRVSVGRTGRVTPYGVMRPVTVAGSTVE 368 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + +V R G + +GD V++++AG+VIP+++ +V R + FS Sbjct: 369 MATLHN---------AFEVKRKG--VLLGDTVVLRKAGDVIPEILGPVVELRDGSEREFS 417 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + + + K G RC C +Q ER+ SR A +IE LG + Sbjct: 418 MPDRCPSCGTELAYE---KDGD--KDLRCPNAKGCPSQLRERVFGLASRGALDIEALGWE 472 Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520 E D + +P A +F LQ RR++ S Sbjct: 473 AAIALTDPENQRPQDEEAAEGLPERQTAVLSSEAGLFDLQPDDLAGVKVWRRRKVSGKLS 532 Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 T + ++D + K ++ L R + +L IRHVG AR+LA Sbjct: 533 PWQLEPYFFTKATAKKPSVPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI-----VEFYQNPRNICAVE 626 ++ S + + +A V VG+IIA+++ VE++Q + A Sbjct: 593 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFDVEWHQEIVSRWAAA 642 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 V + R E + ++ +V TG+L+ R +A+E + G + +SRKTD Sbjct: 643 G----VRMADDRDEAPEQT-LKGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTD 697 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ---QYNTTLR 726 ++VG+N GSK KA+ LG I++E F +LL Q TT+R Sbjct: 698 YVVVGENAGSKETKARDLGRPILDEAGFRYLLDNGPQGVTTVR 740 >gi|168183572|ref|ZP_02618236.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf] gi|237796711|ref|YP_002864263.1| NAD-dependent DNA ligase LigA [Clostridium botulinum Ba4 str. 657] gi|254781290|sp|C3KUA1|DNLJ_CLOB6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|182673387|gb|EDT85348.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf] gi|229263356|gb|ACQ54389.1| DNA ligase, NAD-dependent [Clostridium botulinum Ba4 str. 657] Length = 664 Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 214/704 (30%), Positives = 359/704 (50%), Gaps = 58/704 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +E++ + YY P I D EYD LK I + P P ++ Sbjct: 6 EKMKKLVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKETQVTL---PYSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132 G ++ K TH SL+K N+E L ++ R + ++ + S + + + Sbjct: 62 GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121 Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + Y E G + +A RG G GED++A I+ I T+P L + +IEV GE Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNNHVIEVHGEA 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 ++K F +E + P N RN A+G LR L+ + R L+ F + +G Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPE 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K EM+ +R +G P + +++ + ++SIR L YDIDG V VD+ Sbjct: 236 FKSYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIREELDYDIDGAVIVVDDIK 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG + Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+N D IK +++++G +VLV+R+ +VIP+++ +V E +++ Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESKEIQA 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +V++ + C L+C Q ++ + HF SR+A NI G + Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSGKT 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ D I+ +D++ +++ + + K FGD NL D+I +N L Sbjct: 456 AEQLFERLD----IKSISDLYKIRKEELLTLDK------FGDKKSQNLIDAIENSKNCDL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 FI++LGI +VG + A L + ++ N I L+ VP VG+I+A+ Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I +F+++ + I +E LL E+ + K +V TG+L R + ++ + Sbjct: 556 SIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGEIKDKL 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659 >gi|87123447|ref|ZP_01079298.1| BRCT domain:NAD-dependent DNA ligase N-terminus [Synechococcus sp. RS9917] gi|86169167|gb|EAQ70423.1| BRCT domain:NAD-dependent DNA ligase N-terminus [Synechococcus sp. RS9917] Length = 694 Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 225/730 (30%), Positives = 355/730 (48%), Gaps = 67/730 (9%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S E+AR EL +L ++ YY P + D YD L R + A P L P+ Sbjct: 5 SGERAR-ELRTLLNRAAH---AYYVLDAPEMEDPVYDRLYRELVELEQADPSLC---SPD 57 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG V H I LSL+ +NI +L + R+ R ++ P Sbjct: 58 SPTQRVGGPPAAGFQSVRHRIGLLSLDNAFNIGELEAWYARLLRVLDREPGAGAPLPALP 117 Query: 133 -----KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186 KIDG + + YE+G V AA RGDG GE ++A +R I +P L L PE +E Sbjct: 118 MVGELKIDGNALALSYEQGVLVRAATRGDGEQGEAITANVRTIGAVPLRLQLEQPPEWLE 177 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-- 243 VRGE +I F A+N E A G +ANPRNA +G LR+L+P + R L+FF + L Sbjct: 178 VRGEAFIPDGTFSAINAEREARGEALFANPRNACAGTLRQLDPKVVAARRLDFFAYTLHL 237 Query: 244 ------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 G Q+E LQ ++ GF VN + + ++ + + R LPY Sbjct: 238 PEGWQAGAGDPARPSSQWESLQWLKRAGFKVNPNAELLPSLAAVEGFFAQWQEGRKALPY 297 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DG+V K+++ LQ G ++PRW I+ K+ ++A ++LL + Q+GRTG++TPVA Sbjct: 298 ATDGVVVKLNDLRLQDAAGFTQKAPRWAIALKYPAEEAPSKLLRLTCQVGRTGVVTPVAE 357 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 E V + G ++ ATLHN D + L D+ D ++V++AGE+IP+VV ++ Sbjct: 358 FEAVPLAGTSVSRATLHNADRLAEL-----------DLHADDTIVVRKAGEIIPEVVRVL 406 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 R +A P CP C S +VR+ AA RC +C A L+H+VS Sbjct: 407 TELRPANAARLELPHTCPECGSELVREEGE------AATRCVNS-SCPAILRGALRHWVS 459 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 + A +++GLG + ++ D I AD++ L S ++ G S N Sbjct: 460 KGALDVDGLGSKLIEQLV---DRGLVSSI-ADLYRLDGALLASLERM------GQKSADN 509 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L ++ + R ++ LGI HVG A++LA + S + A + + Sbjct: 510 LVAALAASKAQPWHRQLYGLGIHHVGEVNAKALAAAFPSAADLAAAAADHAD-------A 562 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS---------SEIE 648 + V +G IAQ++ +++ N+ + A L+ + S+ E+ + +++ Sbjct: 563 ITAVFGIGAEIAQSLQQWFATAANLNLL-AELERLGFSLSSSEEELQAAAERSAASAQLS 621 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 + V TGTL + R +A+E + G VS +S+KT ++ G+ GSKL KA+ LGV + Sbjct: 622 GQTFVLTGTLPSLSRSQAKELIEAAGGKVSGSVSKKTSYVVAGEEAGSKLSKAESLGVPV 681 Query: 709 MNEEQFLFLL 718 ++E LL Sbjct: 682 LDEAGLQALL 691 >gi|33519955|ref|NP_878787.1| DNA ligase [Candidatus Blochmannia floridanus] gi|81666906|sp|Q7VRU2|DNLJ_BLOFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|33504301|emb|CAD83193.1| DNA ligase [Candidatus Blochmannia floridanus] Length = 594 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 202/618 (32%), Positives = 323/618 (52%), Gaps = 51/618 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L + ++Y + YY S+ + D EYD L + +P L ++ + Sbjct: 11 LRERLNYLEYLYYVKSESKVSDEEYDILLEELRQLEFKYPYLITKSSSTQSISNVCDN-- 68 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKD--DNSIFFTLEPKIDGTMIT 140 SL ++ H P LSL I + L F RI Y+ + N I + E KIDG ++ Sbjct: 69 -SLNRIRHQKPMLSLNSIRDKSQLLLFDKRIKYKLSNHYNINQNLIVYCCELKIDGVALS 127 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYISKN 196 I Y++GK V+AA RGDG GE+V+ + AI +IP+ L N +P+++E+RGE++ISK Sbjct: 128 ILYKQGKLVHAATRGDGKIGENVTKNVNAIDSIPKNLKKNNNEILPDLLEIRGEIFISKL 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP--TDITRYLNFFVHGLGKTSEI--FAK 252 F LN EM++ G+K ++N RNAASG LR+L+P T++ R L F +G+ + + Sbjct: 188 SFSKLNQEMLSSGKKVFSNARNAASGSLRQLDPHVTEL-RSLVFCCYGISYYAGLKQLPN 246 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 + L+ G +NN ++ + ++ YYN ++ IRS L Y IDG+V K+D Q Sbjct: 247 SHWGRLKLCNRWGLSINNYIQIVSGIDPVLEYYNYVRKIRSELEYQIDGIVIKIDNCIYQ 306 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 QLG R+P W +++KF + T+L D+ ++GRTG++TP+A + PV IG +I Sbjct: 307 DQLGCGFRAPNWAVAYKFPAELKLTKLNDVVFKVGRTGLITPIAYINPVVIGNVIIKKVN 366 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 +HN + +K L ++ +GD V+V+R+G+VIPK++ II+ R +A+ P Sbjct: 367 MHNVNEVKRL-----------NLMIGDTVIVQRSGDVIPKILKIILENRVDNAKFIKIPE 415 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 FCP C S +++ + K+ L RC L C AQ+ LKHF SR A NI+G+G + ++ Sbjct: 416 FCPSCGS-ILKVEDNKSSVL----RCLAKLTCLAQRKSALKHFASRKAMNIQGMGSRVIN 470 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 D I P D F+L + + + +G+ S L SI + I+L Sbjct: 471 QLV---DKGL-ICTPVDFFSLSKEKLLCLDR------YGEKSAERLLQSILIAKEITLSA 520 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI++LGI VG ++ LA Y + +N N D S +++ +G I A I Sbjct: 521 FIYALGIPGVGESVSNKLAYMYRTIENLM----------NADLQSFLQLKFIGKIAAMNI 570 Query: 613 VEFYQNPRNICAVEALLK 630 F N ++ L++ Sbjct: 571 YSFLHQSDNYNNIQGLIR 588 >gi|255526475|ref|ZP_05393386.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7] gi|296184848|ref|ZP_06853259.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7] gi|255509857|gb|EET86186.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7] gi|296050630|gb|EFG90053.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7] Length = 669 Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 212/722 (29%), Positives = 366/722 (50%), Gaps = 70/722 (9%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I+ ++++ L +E++ + YY P + D EYD + +L + E Sbjct: 3 TIDTKKEQIEKLVEELNKYAQEYYLLDNPSVSDKEYDL----------RYDELLKLEKET 52 Query: 73 G------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR------IYRFWQK 120 G P ++G + K TH SL+K ++ + + R Y + Sbjct: 53 GIILPYSPTQRVGDNILKEFQKYTHKGKLWSLDKSQTVQGIIDWHVRNKKAVDDYNSTHE 112 Query: 121 KDDNSIFFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 + + + + K DG I Y E G + AA RG G GED++A R I ++P L + Sbjct: 113 EKLPQLEYVITKKFDGLTINCTYDENGILIKAATRGTGEVGEDITAQARTIMSLP--LKI 170 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNF 238 N +IEV GE +++ F N P N RN A+G LR LN + R L+ Sbjct: 171 NNSNVIEVHGEAIMTREAFEEYNKSAAV----PLKNLRNGAAGALRNLNIKETARRKLSA 226 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + +G K +EM+ ++ +GFP++N ++ ++ I + ++ IRS L YD Sbjct: 227 FFYDVGYNEGAPFKTYFEMMNFIKNMGFPLDNYIKICSSIEEIENELKYVEEIRSELNYD 286 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V +++ ++ LG + P+W I++KF ++A+T+LLD++ +GR+G +TP A L Sbjct: 287 IDGVVIAINDMKTREILGYTIKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVTPTAIL 346 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV + G + ATL+N D IK +++R+G V V+R+ +VIP+++ +V Sbjct: 347 EPVELAGVTVKRATLNNMDDIK-----------RKEVRIGCSVFVRRSNDVIPEIMG-VV 394 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + + P CP C S +V+D + C L+C Q ++ + HF SR Sbjct: 395 QDTLEGSIEIQAPEKCPYCDSELVQD--------GVHYFCDNTLSCKPQMVKSIVHFGSR 446 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +A NIEG ++ + F+ I+ D++ +++ K F + NL Sbjct: 447 EAMNIEGFSEKTAEQLFEK----LEIKSIPDLYRIKKEDLMQLDK------FAEKKAQNL 496 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 ++I K +N SL FI++LGI ++G + A L K + S ++NII + ++ L Sbjct: 497 VNAIEKSKNCSLASFIYALGIPNIGKKTATDLVKNFKS-------LDNIIQSSEEE---L 546 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + + VG+I+A++I+EF+ + I ++ LL+ I E+ S +K +V TG+L Sbjct: 547 VSIQDVGEIVAKSIIEFFNEDKIINSINELLELGVKPIFEEEEVSKSLFSDKTVVVTGSL 606 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +E + +GA VS +S+KTD ++ G GSK +KA +LGVKI+NEE+F +L Sbjct: 607 ENYTRTTIKEKLQSVGAKVSGSVSKKTDYVLAGKEAGSKYDKALELGVKIINEEEFEKML 666 Query: 719 QQ 720 + Sbjct: 667 SK 668 >gi|304372912|ref|YP_003856121.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis HUB-1] gi|304309103|gb|ADM21583.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis HUB-1] Length = 673 Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 224/708 (31%), Positives = 377/708 (53%), Gaps = 53/708 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG- 73 +QA+K++ L Q++ + Y+ PI+ D YD + + + L E+ N Sbjct: 13 KQAKKQIEELRQKLHLWNHHYFDLDIPIVDDLVYDQELNKLKKLEKKYFYLFTLEENNAS 72 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G +++ K+ HS P LSL K +++E+L+KF + + D+N+ F+ +EPK Sbjct: 73 PTQIVGAKVDERFQKIKHSQPMLSLNKAYSLEELKKFAQKAIKI----DENASFY-VEPK 127 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEIIEVRGEV 191 IDG I++ Y++GKF A RGDG +GEDVS I I +P+ S+N + IE+RGEV Sbjct: 128 IDGISISLHYKQGKFTQAVTRGDGTTGEDVSHNIENIDAKYVPK--SINYFDDIEIRGEV 185 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 ++ F +N E + + + NPRNAA+G LRRL+ ++ L FV+ + Sbjct: 186 FLDLESFKNMNLEQARLEKPLFLNPRNAAAGQLRRLDSKSNKLANLKVFVYQVVNPELHN 245 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E +Q ++ LGF NN + H E++ + L Y+IDG+V KV+EF Sbjct: 246 LATVEESIQFLQTLGFNTNNLGQHKANIHQSYQLIQEIQEKENKLNYEIDGVVIKVNEFK 305 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L +LG ++ P I+ KF++K T+L I +GRTG +T A LEPV + G+ I+ Sbjct: 306 LYDELGTTSKFPHSAIAFKFSDKVVQTKLKHIFATVGRTGKITYNAVLEPVLLQGSTISA 365 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN +YIK L I V +K+AGE+IP+V+ + + F Sbjct: 366 ATLHNYNYIKDL-----------AINTNSMVYIKKAGEIIPQVIQSV---EKFEKTNFEK 411 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP C S ++ + +TG C C QL ++ HF S++ +I+ LG+++ Sbjct: 412 ITNCPECNSDLI---DSETG---IDQFCINP-NCLGIQLRKIIHFCSKEGLDIKDLGEKK 464 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F+ D IP DIF R T +I + F S+ L ++I K ++ +L Sbjct: 465 IELFW---DQNLIRSIP-DIF----RLATKIEEISKLKSFQQKSILKLINAIEKAKHTTL 516 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++ IF+LGI+H+G + A+ L AQ+++N+ ++ + + +G+ + Sbjct: 517 DKLIFALGIKHIGQKTAKML----------AQKVDNLEQLKTFNFDTFLEDKDIGEKTVE 566 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ +++N N+ + L+ +V+ I + E+ S+ +EN V TGTL + R + + + Sbjct: 567 SLKNYFKNEANLQIINELI-QVNFEIIK-EETYSNILENLSFVITGTLSR-SRSQIELII 623 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 Q VS+ +S+ T +I+G+N GSK +KA+ LGVKI++EE+F LL Sbjct: 624 LQNKGKVSSSVSKNTSYLILGENGGSKEDKARNLGVKILSEEEFFKLL 671 >gi|330723500|gb|AEC45870.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis MCLD] Length = 673 Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 224/708 (31%), Positives = 376/708 (53%), Gaps = 53/708 (7%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG- 73 +QA+K++ L Q++ + Y+ PI+ D YD + + + L E+ N Sbjct: 13 KQAKKQIEELRQKLHLWNHHYFDLDIPIVDDLVYDQELNKLKKLEKKYFYLFTLEENNAS 72 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G +++ K+ HS P LSL K +++E+L KF + + D+N+ F+ +EPK Sbjct: 73 PTQIVGAKVDERFQKIKHSQPMLSLNKAYSLEELEKFAQKTIKI----DENASFY-VEPK 127 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT--IPRVLSLNIPEIIEVRGEV 191 IDG I++ Y++GKF A RGDG +GEDVS I I +P+ S+N + IE+RGEV Sbjct: 128 IDGISISLHYKQGKFTQAVTRGDGTTGEDVSHNIENIDAKYVPK--SINYFDDIEIRGEV 185 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 ++ F +N E + + + NPRNAA+G LRRL+ ++ L FV+ + Sbjct: 186 FLDLESFKNMNLEQARLEKPLFLNPRNAAAGQLRRLDSKSNKLANLKVFVYQVVNPELHN 245 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E +Q ++ LGF NN + H E++ + L Y+IDG+V KV+EF Sbjct: 246 LATVEESIQFLQTLGFNTNNLGQHKANIHQSYQLIEEIQEKENKLNYEIDGVVIKVNEFK 305 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L +LG ++ P I+ KF++K T+L I +GRTG +T A LEPV + G+ I+ Sbjct: 306 LYDELGTTSKFPHSAIAFKFSDKVVQTKLKHIFATVGRTGKITYNAVLEPVLLQGSTISA 365 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN +YIK L I V +K+AGE+IP+V+ + + F Sbjct: 366 ATLHNYNYIKDL-----------AINTNSMVYIKKAGEIIPQVIQSV---EKFEKTNFEK 411 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP C S ++ + +TG C C QL ++ HF S++ +I+ LG+++ Sbjct: 412 ITNCPECNSDLI---DSETG---IDQFCINP-NCLGIQLRKIIHFCSKEGLDIKDLGEKK 464 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F+ D IP DIF R T +I + F S+ L ++I K ++ +L Sbjct: 465 IELFW---DQNLIRSIP-DIF----RLATKIEEISKLKSFQQKSILKLINAIEKAKHTTL 516 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++ IF+LGI+H+G + A+ L AQ+++N+ ++ + + +G+ + Sbjct: 517 DKLIFALGIKHIGQKTAKML----------AQKVDNLEQLKTFNFDTFLEDKDIGEKTVE 566 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ +++N N+ + L+ +V+ I + E+ S+ +EN V TGTL + R + + + Sbjct: 567 SLKNYFKNEANLQIINELI-QVNFEIIK-EETYSNILENLSFVITGTLSR-SRSQIESII 623 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 Q VS+ +S+ T +I+G+N GSK +KA+ LGVKI++EE+F LL Sbjct: 624 LQNKGKVSSSVSKNTSYLILGENGGSKEDKARNLGVKILSEEEFFKLL 671 >gi|4235378|gb|AAD13192.1| NAD-dependent DNA ligase [Thermus filiformis] Length = 537 Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 190/520 (36%), Positives = 294/520 (56%), Gaps = 47/520 (9%) Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP+ + P+ P ++G F+ V H SL+ + E++ F R+ R + Sbjct: 2 FPEF---KSPDSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLERALGR 58 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K +T+E K+DG + + YE+G V+ A RGDG GE+V+ + IPTIPR L Sbjct: 59 K--RPFLYTVEHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLK-G 115 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LN 237 +P+ +EVRGEVY+ FL LN+E+ G K + NPRNAA+G LR+ +P + Sbjct: 116 VPDRLEVRGEVYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRAT 175 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F+ GLG E K QYE+L ++ GFPV +G +A G+ Y + R LP+ Sbjct: 176 FYALGLG-LEESGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYRRFLAQRHALPF 234 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 + DG+V K+D+ +L ++LG AR+PR+ +++KF ++ TRLLD+ Q+GRTG +TPV Sbjct: 235 EADGVVVKLDDLALWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGV 294 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV I G+ ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ Sbjct: 295 LEPVFIEGSEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVL 343 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 R + +P +P CP C R+V K GK+ HRC L C A++ E ++H+ S Sbjct: 344 KERRTGEERPIRWPETCPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYAS 394 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVS 534 R A +IEGLG++ ++ + +R AD++ L++ E++LG G+ S Sbjct: 395 RKAMDIEGLGEKLIERLLEK----GLVRDVADLYHLRK---------EDLLGLERMGEKS 441 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 NL I + ++ LER +++LG+ VG +AR+LA+ + Sbjct: 442 AQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRF 481 >gi|208434535|ref|YP_002266201.1| DNA ligase [Helicobacter pylori G27] gi|254781346|sp|B5Z6Y6|DNLJ_HELPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|208432464|gb|ACI27335.1| DNA ligase [Helicobacter pylori G27] Length = 658 Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 227/699 (32%), Positives = 359/699 (51%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY + I+ D+ YD L + A P+ ++ N P K+G S Sbjct: 18 LSHH---YYNLDESIVSDAVYDELYQELKAYEEKNPNDIQA---NSPTQKVGATATNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQSELQAWLQRILKTYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE V+ + I IP ++ + IE+RGEV ISK DF ALN E + Sbjct: 127 LVSATTRGNGLEGELVTNNAKHIANIPHFIAYDGE--IEIRGEVIISKEDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E ++QK+LG +SP++ Sbjct: 243 FSAIQYLNLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA+I ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMINRATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + D+V+V R+G+VIPK++ + R Q P CPIC ++ + Sbjct: 358 ------KKNIMLNDKVVVIRSGDVIPKIIKPLETYRDGSQQKIMRPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ + I Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK----LIV 458 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 459 NALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L N++ + ++L + G + +++V FY N Sbjct: 510 GKGASKTLAKYGL----------NVLEKSEAEFLEM---EGFGVEMVRSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + ++ SS NK +V TGTL K ++ AQ + LGA +++ + Sbjct: 557 IRSLFELLNPKNSDMAEEKQESSSVFNNKTIVLTGTLSKPRQEYAQ-MLENLGAKITSSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KTD +IVG+N GSKL A++ GV ++NEE+ L L++ Sbjct: 616 SAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKK 654 >gi|255321406|ref|ZP_05362566.1| DNA ligase, NAD-dependent [Campylobacter showae RM3277] gi|255301559|gb|EET80816.1| DNA ligase, NAD-dependent [Campylobacter showae RM3277] Length = 647 Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 223/690 (32%), Positives = 348/690 (50%), Gaps = 76/690 (11%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE----DPNGPLNKIGGEMNLSLFKV 89 YY PI D EYD L H + R+ P ++GGE++ K Sbjct: 19 AYYTDDAPIATDEEYDELY-------HKVLEFERANLGEISMFSPTKRVGGEVSEGFVKA 71 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H S+E I++ ++L ++ R D + F L+PK DG + + YE G V Sbjct: 72 RHGARMWSMEDIFSFDELLAWLKR-------GDKEGLEFALQPKFDGASLNLLYENGALV 124 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 A RGDG +GEDV++ + I IP L + IE+RGEV I+KNDF +N G Sbjct: 125 RAITRGDGITGEDVTSNAKVIKNIP--LQIAYSGRIEIRGEVVIAKNDFDEINFARAQRG 182 Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 +NPRNAA+G LR+L+ +R L F G G+ + + + +M+ + GF Sbjct: 183 ESQLSNPRNAAAGSLRQLDSAVTASRRLRFKPWGYGEQN-LGLETYSQMMDFIYSQGFER 241 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 + + I Y ++ + R + P+ +DGLV +V + ++LG + P++M+++ Sbjct: 242 EEFFKICRSAEQIEEAYKQLVAQRDSKPFMMDGLVVRVQSIAASEELGYTEKFPKFMVAY 301 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 KF + +TRLLD+ Q+GR+G++TPV LEPVNI GA++ +ATLHN D I+ L Sbjct: 302 KFPAIEKTTRLLDVAFQVGRSGVVTPVGVLEPVNIDGAIVKSATLHNFDEIERL------ 355 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 ++ GD + + R+G+VIPK+ + R P P CP+C S ++ + Sbjct: 356 -----GVQKGDFISIIRSGDVIPKITGVFKQRRDGSQTPIERPHECPVCGSMLLDE---- 406 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 G V +C L C A+ + L HF S+ NI+GLG ++ F++ +I A Sbjct: 407 -GVFV---KCQ-NLECKARVINSLIHFASKKCLNIDGLGDAIVNQLFEA---GLVAKI-A 457 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 DI+ L + + + GF D + NL +I R +L FI SLGI H+G A+ Sbjct: 458 DIYEL------TAQDLARLEGFKDKKIANLLGAIEASRTPALHSFIASLGIEHIGEVAAK 511 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV---GDIIAQAIVEFYQ-NPRNICA 624 +A+ Y QN+ + LS V + G+ +A++ EF Q N +N+ Sbjct: 512 KIAQIYP--QNWRE-------------LSFGEVAAIEGFGEAMAESYAEFMQVNRQNL-- 554 Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 + +L+ VSP E S+ I K V TGTL K R + + + GA VS +S+K Sbjct: 555 -DEILRFVSPQAQSFETKQSA-ISGKTFVITGTLSK-GRDEFKRVLEVNGAKVSGSVSKK 611 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TD ++ GD GSKL+KA++LGVK + E++ Sbjct: 612 TDFVLYGDEAGSKLDKARELGVKAITEDEL 641 >gi|307637302|gb|ADN79752.1| NAD-dependent DNA ligase [Helicobacter pylori 908] gi|325995893|gb|ADZ51298.1| DNA ligase [Helicobacter pylori 2018] gi|325997488|gb|ADZ49696.1| NAD-dependent DNA ligase [Helicobacter pylori 2017] Length = 656 Score = 317 bits (812), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 228/699 (32%), Positives = 358/699 (51%), Gaps = 68/699 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY + I+ D+ YD L + A P+ ++ N P K+G Sbjct: 18 LSHH---YYNLDESIVSDAVYDELYQELKAYEEENPNHIQA---NSPTQKVGATATNEFS 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNPHLMRMWSLDDVFNQNELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE V+ + I IP ++ N IE+RGEV I+K DF ALN E + Sbjct: 127 LVSATTRGNGLEGELVTNNAKHIANIPHSIAYNGE--IEIRGEVIIAKEDFDALNKERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E +QK+LG +SP++ Sbjct: 243 FSTIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELDIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEPV I GA++ ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVNRATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R Q P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQQKIMHPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LAKY L +++ + ++L + G +A ++V FY N Sbjct: 510 GKGASKTLAKYGL----------HVLEKSEAEFLEM---EGFGVEMAHSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL S ++ SS +K +V TGTL K ++ AQ + LGA +++ + Sbjct: 557 IRSLFDLLNPKSSDTTEEKQKSSSVFSDKTIVLTGTLSKPRQEYAQ-MLENLGAKIASSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S KTD +IVG+N GSKL AQ+ GV ++NEE+ L L++ Sbjct: 616 SAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKE 654 >gi|254458916|ref|ZP_05072339.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1] gi|207084187|gb|EDZ61476.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1] Length = 653 Score = 317 bits (811), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 211/702 (30%), Positives = 365/702 (51%), Gaps = 80/702 (11%) Query: 26 QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-------GPLNKI 78 ++++ + YY PI D YD L + ++ R E+ N P ++ Sbjct: 11 EQLNLYSHHYYVLDDPITTDEVYDKL----------YHEVVRFEENNKNAVLYSSPSQRV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G ++ K +H SLE I++ E L K++T+ Y+ D++I F EPK DG Sbjct: 61 GDAVSSGFTKASHLSRMWSLEDIFDSEGLEKWLTKTYKL-----DSNISFYCEPKFDGAS 115 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + + YE G+ V RGDG GE ++ ++ I +IP L++ E IE+RGEV I K++F Sbjct: 116 LNLVYENGELVQGITRGDGSVGELITQNVKTIRSIP--LTIAHKERIEIRGEVVIFKDEF 173 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEM 257 +N+ + G +ANPRNAA+G LR+L+ + +R L F +G+G+ S +Y++ Sbjct: 174 DKINEARLKAGEAVFANPRNAAAGSLRQLDSSITASRNLVFLPYGVGEDSL-----EYKL 228 Query: 258 LQKMRC----LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 L LGF + I + Y MK+ R + P +DG+V KV+E + Q Sbjct: 229 LSDKMAYIYELGFRKPPASSTCKGYDEIEAIYEVMKNDRDSYPMMLDGMVIKVNEIASQI 288 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +G ++PR+ +++KF + T + I +Q+GR+G +TPVA++EP +I G ++ ATL Sbjct: 289 DMGYTVKNPRFSVAYKFPAVEKITTIRAIVLQVGRSGAVTPVAQVEPTDIDGVVVERATL 348 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I +DIR+ D+V++ R+G+VIPK++ ++ +ER P+ P+ Sbjct: 349 HNFDEID-----------RKDIRLNDKVIILRSGDVIPKIIKVLTHERDGSEVPYERPTL 397 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S ++ + G L+ +C L C A+ + + +F S+ NI+GLG + ++ Sbjct: 398 CPVCDSELLDE-----GVLL---KCQ-NLECEARVVNSIIYFASKPCLNIDGLGNKIVEA 448 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F S ++ D+F L + K+ + GF + NL +S+ + RF Sbjct: 449 LFVSG----LVKSVVDLFDL------TLDKLLALEGFKEKKSQNLLNSLEAAKGCDYWRF 498 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I SLGI HVG +++L+ +NF + ++ +G+ +A++++ Sbjct: 499 INSLGIEHVGEVASKTLS------ENFGSSFIDATKE------EIVACDGIGEEMAESVL 546 Query: 614 EFYQ-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 EF + N I ++ +LK + P + + V + + K V TGT+ + R +E + + Sbjct: 547 EFVRVNRETILNLQEILKPLEPV--QKAEAVENPFKGKTAVLTGTMSE-SRGAIKEMLEE 603 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 GA VS +S+KTD +I G++ GSK +KA LGV+ + E++ Sbjct: 604 FGAKVSGSVSKKTDFLIYGEDAGSKYDKAMSLGVECLTEDEM 645 >gi|196234150|ref|ZP_03132983.1| DNA ligase, NAD-dependent [Chthoniobacter flavus Ellin428] gi|196221801|gb|EDY16338.1| DNA ligase, NAD-dependent [Chthoniobacter flavus Ellin428] Length = 658 Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 209/658 (31%), Positives = 324/658 (49%), Gaps = 95/658 (14%) Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIE 186 + +EPK+DG +++ YE G F A RGDG G++++ ++ + +IP R+ PE++E Sbjct: 9 WLVEPKVDGLAVSLLYENGVFTRGATRGDGERGDEITDNLKTLRSIPLRLHGKGAPEVLE 68 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK 245 VRGEVY+ F + +EMIA G +P+AN RN A+G L++L+P + R L ++GLG+ Sbjct: 69 VRGEVYLPVAGFQRIREEMIAAGEEPFANARNTAAGTLKQLDPALVAKRPLEIVLYGLGE 128 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S Q +L+ M+ G R +T ++ +E+ SIR ++ DG V K Sbjct: 129 ISVDPPPTQAALLEWMKAFGLRTPKFTRVCHTAEEVMKAIDELDSIRDGFGFETDGAVIK 188 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 ++ ++++G +R+P+W + K+ +QA T L I IQ+GRTG+LTPVA L PV + G Sbjct: 189 LNSIEQRERVGYHSRAPKWAKAWKYVSEQAETVLESITIQVGRTGVLTPVAELRPVFLRG 248 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + I+ ATLHNED IK +DIR+GD VL+++AGEVIP VV +++ +R A Sbjct: 249 STISRATLHNEDEIKR-----------KDIRIGDTVLIEKAGEVIPAVVKVVLEKRPSSA 297 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 QPF FP CP+C S+ RD N A C + C AQ RL++F R A +I+G Sbjct: 298 QPFPFPHECPVCHSQAKRDPN------FAVWVCEN-VNCPAQLTRRLEYFAKRGALDIDG 350 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ----------------QTSTTKIE---- 525 LG D + +R P D+F L+ Q + + TK+ Sbjct: 351 LGGIVADKLVERS----LVRDPLDLFELKLEQLATLNLGTDDEPRVFGEKNATKVTEAIK 406 Query: 526 -----------NILGFGDVSVTNLYD------SINKRRNISLERFIFSLGIRHVGAEIA- 567 + L +V +D S+ R+ ++ R + +L H AE + Sbjct: 407 RAKTQPLARWLHALAIPEVGEETAHDLAKHHPSLEAVRDSAMLRDVVALDRLHGEAEESN 466 Query: 568 ----RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI---------------- 607 R+ K L Q A +IA N L+ Sbjct: 467 PRGKRNKDKTELEKQKLASRHAEVIAEANAAGRRLLEAGFAAPAKKKSATDADVVTVVGP 526 Query: 608 -IAQAIVEFY------QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 +AQA + ++ + + + + K +P G K V TGTL+K Sbjct: 527 VVAQAALHWFAGESGHETLKRLHHLHIAPKGATPGAG------DQAFAGKTFVLTGTLEK 580 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R+ A E + LG VS+ +SRKT ++ G GSKLE AQ LGV +++E+QFL +L Sbjct: 581 MGRNAAAEKIRALGGNVSSSVSRKTSYVVAGPGAGSKLEDAQSLGVTVLSEDQFLKML 638 >gi|308071012|ref|YP_003872617.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus polymyxa E681] gi|305860291|gb|ADM72079.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus polymyxa E681] Length = 680 Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 221/721 (30%), Positives = 358/721 (49%), Gaps = 78/721 (10%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L E++ ++ YY +P I D EYD L A+ + P+ P ++GG Sbjct: 16 MEQLVAELNTYNYHYYTLDEPKISDKEYDVLYDELVALEQTSGLVL----PDSPTQRVGG 71 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDN----SIFFTLEPK 133 E+ H P SL+K N+E LR + R+ + + K+ S + +E K Sbjct: 72 ELLKGFTPHRHLAPLWSLDKAQNMEQLRAWNARVVKLVNDYNTKNPEQPLPSPGYAIELK 131 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRGE 190 DG + + Y G+ V A+ RG+G GE + A ++ I ++P L IP IEV+GE Sbjct: 132 FDGLTLNLTYTDGQLVQASTRGNGVVGEGILAQVKTIKSVP----LTIPFRNGTIEVQGE 187 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249 ++ + N + P N RNAA+G LR LNP R LN F + +G I Sbjct: 188 GIMNLSVLSKYNKTAV----DPLKNARNAAAGALRNLNPKVTAERRLNAFFYNVGYADRI 243 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 EM+ +R F VN + + F ++ E++ R+ L Y IDG V K+ + Sbjct: 244 QFNSHQEMMTFLRENHFKVNPYLTYFDNFEDVMEQLIEIEESRAGLDYLIDGAVLKITDM 303 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++ LG + PRW +++KF ++ +T L ++ +GRTG +TP+AR+EPV + G + Sbjct: 304 RTREALGYTDKFPRWAVAYKFEAEETTTVLNSVEWNVGRTGKITPLARVEPVELAGVTVQ 363 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 N TL+N +G + R +G RV ++R+ +VIP+++ + +E D + Sbjct: 364 NCTLNN---------AGDIERKNLKFALGARVFIRRSNDVIPEILGKVTSEN--DGEEIV 412 Query: 430 FPSFCPIC----QSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIE 484 P CP C Q R AH C L C Q + R+ HF SRDA +IE Sbjct: 413 VPDHCPACGFPLQQR-------------GAHLFCDNKLGCKPQIVARISHFASRDAMDIE 459 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 + + D +R PAD++TL Q K+E FG+ +NL ++ K Sbjct: 460 TFSDKTA---IQLHD-ELEVREPADLYTL---QYDDLVKLER---FGEKKASNLLAALEK 509 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 ++ L F+++LGI + G R LA++Y ++++ ++ ++ LI +P V Sbjct: 510 SKDRDLASFLYALGIPNTGKATTRMLAEHY-------RDLHKTMSATVEE---LIELPDV 559 Query: 605 GDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 G I+A++IV F+ +P +E +L K +P EK S K +V TGTL + Sbjct: 560 GGIVAESIVAFFADPFTQAGIEKMLSLGVKAQAPE-APQEKKTDSFFSGKTVVLTGTLHQ 618 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV-KIMNEEQFLFLLQ 719 + R +A + +GA V+ +S+KTD++I G+ GSKL KAQQLG+ I +E++F+ LL+ Sbjct: 619 LTRDEAVSKLEAMGAKVAGSVSKKTDLVIAGEKAGSKLAKAQQLGIDTIEDEDEFIRLLE 678 Query: 720 Q 720 Q Sbjct: 679 Q 679 >gi|187776813|ref|ZP_02993286.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC 15579] gi|187775472|gb|EDU39274.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC 15579] Length = 664 Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 213/707 (30%), Positives = 361/707 (51%), Gaps = 64/707 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +E++ H YY I D EYD + D + + P P ++ Sbjct: 6 EKMKELVEELNQHAYEYYVLDNSSISDKEYDL---KYDELV-VLEKETKVTLPYSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR----IYRFWQKKDDN--SIFFTLEP 132 G + K TH SL+K N+ L ++ R + ++ +D + + + Sbjct: 62 GDNILGEFGKYTHKGRLWSLDKAQNMSQLTEWHNRNLKTVEQYNSINEDKLPELRYIVTK 121 Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + Y E G V A RG G GED++A I+ I T+P L + +IEV GE Sbjct: 122 KFDGLTVNCTYDENGILVKGASRGTGIIGEDITAQIKTIKTVP--LKIKNNHVIEVHGEA 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 ++K F +E + P N RN A+G LR L+ + + R L+ F + +G Sbjct: 180 ILTKTAF----EEYNKTAQVPLKNLRNGAAGALRNLDIKETSKRNLSAFFYDVGYNEGPE 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K EM++ ++ +G P + +++ + ++SIR L YDIDG V VD+ Sbjct: 236 FKSYTEMMKFIKNMGLPQDKYIKECTNMEEVEKEIQYIESIREELDYDIDGAVIVVDDIK 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +K LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG + Sbjct: 296 TRKVLGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+N D I+ +++++G +VLV+R+ +VIP+++ +V E +++ Sbjct: 356 ATLNNMDDIQ-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESKEIEA 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +V++ + C L+C Q ++ + HF SR+A NI G ++ Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKT 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ D I+ AD++ +++ + + K FGD NL D+I +N L Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLDK------FGDKKSQNLIDAIENSKNCDL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 FI++LGI +VG + A L + + +N L+ VP VG+I+A+ Sbjct: 506 PSFIYALGIPNVGKKTANDLVMKFKTLENIESATIE----------ELVEVPDVGEIVAK 555 Query: 611 AIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQ 667 ++ +F+++ + I +E LL V P +E+ + E K +V TG+L R + + Sbjct: 556 SVYDFFKDEKIINNIEELLNLGVKP---YYEEEIIDENPFMGKTIVVTGSLNNYSRGEIK 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + + LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F Sbjct: 613 DKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAVELGVKVINEEEF 659 >gi|68536402|ref|YP_251107.1| NAD-dependent DNA ligase LigA [Corynebacterium jeikeium K411] gi|123748223|sp|Q4JUL8|DNLJ_CORJK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|68264001|emb|CAI37489.1| DNA ligase [Corynebacterium jeikeium K411] Length = 695 Score = 316 bits (810), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 214/714 (29%), Positives = 348/714 (48%), Gaps = 65/714 (9%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L ++ +H YY Y +P I D+++DAL + + A P++ P + Sbjct: 10 LADQVRHHRQLYY-YGEPEISDADFDALLQELKDLEQAHPEVVTGASPTEEVAP--APPT 66 Query: 84 LSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 S F+ V H LSL+ +++ E L ++ R + + E KIDG I + Sbjct: 67 SSPFRNVDHREQMLSLDNVFDTEQLAGWLDRT---------PAKTYLTELKIDGASINLL 117 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYISKNDF 198 Y G+ A RGDG +GED++ R + IP L +PE++E+RGEV+I DF Sbjct: 118 YIDGQLELALTRGDGTTGEDITHNARTLDDIPDTLHGTDEFPVPELVEIRGEVFIDVEDF 177 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEM 257 A+N + A G K +ANPRNAA+G +R+ N D R L HG+G Q++ Sbjct: 178 AAMNAQRQAEGLKMFANPRNAAAGAMRQKNSADTAKRPLKLICHGIGAREGFSPASQHDA 237 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 + + G PV+ +Q ++ + + R +++DGLV KVD Q +LG Sbjct: 238 YRAIAAWGLPVSPYTKQVHSAKEVQQQVEYWGNHRHDAAHEMDGLVVKVDSLEEQLELGH 297 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN-- 375 +R+PRW I++K+ ++A T L +I + IGRTG TP A + P + G+ ++ ATLHN Sbjct: 298 TSRAPRWAIAYKYPPEEAMTTLHNIRVGIGRTGRATPYAVMAPKYVAGSTVSMATLHNPT 357 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 E + KG + +GD + +++AGEVIP+V+ + ++R +PF F +FCP Sbjct: 358 EAHRKG-------------VLLGDTITIRKAGEVIPEVLGPVEDKRTGAERPFLFSTFCP 404 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C +R+ K G A RC C Q RL + SR AF+I+ LG++ Sbjct: 405 ECGTRLAPS---KVGD--ADWRCPNTQYCPGQLHTRLTYLASRKAFDIDALGEKGAYDLI 459 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 S + +++F L+ T+ G + S L + + + L R + Sbjct: 460 HS----GVLADESELFDLRAEDLEKTSSYATKAGKLNKSGETLLEKLQSAKEADLWRVLV 515 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNF----AQEINNI------IAHNNDDWLSLIRVPLVG 605 +L IRHVG A++LAK++ S ++ A+E+ I IA + DW ++ + Sbjct: 516 ALSIRHVGPTAAKALAKHFESVEDIASASAEEMAGIDGVAETIAESISDWFTVDWHRRIV 575 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 D A A V + N+ G + S+ +E +V TG+L+ R Sbjct: 576 DRWAAAGVRMRREAGNVP-------------GAADGVDSALLEGLTIVVTGSLEDFDRTA 622 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + G + +S+KTD ++ G+ GSKL+KA+ LGV +++E F LL+ Sbjct: 623 AKEAIEARGGKAAGSVSKKTDFLVAGEKAGSKLKKAEDLGVPVLDEAAFKELLE 676 >gi|261414540|ref|YP_003248223.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp. succinogenes S85] gi|261370996|gb|ACX73741.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326001|gb|ADL25202.1| DNA ligase (NAD+) [Fibrobacter succinogenes subsp. succinogenes S85] Length = 715 Score = 316 bits (810), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 216/715 (30%), Positives = 363/715 (50%), Gaps = 81/715 (11%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN-KIGGEM 82 L++++ YY+ + D ++D + +A+ +P+L G L K+G ++ Sbjct: 15 LKKQLEEASRLYYKDGVSPMSDQDFDFGLKEMEALEAKYPELR----GKGSLTQKVGSDL 70 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFI--------TRIYRFWQKKDDNSIFFTLEPKI 134 KV H++P LS+ +++ E++R+F+ + + R KK + E KI Sbjct: 71 TNDFAKVAHAVPMLSIANVYSEEEMREFVKAAEEGLSSFVSRLSSKK------WICERKI 124 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-----RVLSLNIPEI----I 185 DG +++ YE G+ AA RGDG G+DV+ I IP + L ++ EI Sbjct: 125 DGVSLSVIYENGRLKQAATRGDGAQGDDVTLNALTIADIPEYFDAKKLKIDPSEIPQGTF 184 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG 244 EVRGEVY+ + F LN++ I +K + N RN SG L+ + + TR + FF + + Sbjct: 185 EVRGEVYMEREAFERLNEQFILENKKTFQNCRNTVSGSLKLKSVAECKTRPMRFFAYHIP 244 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 +++ K E L++++ LGF N+ A+T I++ ++ + R +LP+DIDG+V Sbjct: 245 QSNN---KTHEENLKQLKRLGFHTND-YWTADTVDEIMAISEKIGASRDSLPFDIDGMVV 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+++ Q++LG ++SPRW I++KF ++A T LL ++ Q+GRTG +TPVA L PV + Sbjct: 301 KLNDLQQQRELGSTSKSPRWAIAYKFKAERAYTPLLSVEFQVGRTGAVTPVANLAPVRLA 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + ATLHN D + L D+ GD V V++ GE+IPK+ D+ R Sbjct: 361 GTTVKRATLHNFDEVARL-----------DLHYGDTVGVEKGGEIIPKITDVKRELRPAG 409 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A P P CP+C + L G+++ RC L C AQ +HFVSR+A NIE Sbjct: 410 ASPVVAPEKCPVCGEQ----LTHIDGEVIL--RCE-NLHCKAQVQCLFEHFVSREAMNIE 462 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 LG + + RIP D++ L S ++ S N++D+I Sbjct: 463 NLGPALIASLLATGKIK---RIP-DLYRLTLEDLESQERM------AKKSAKNVFDAIQA 512 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDWLSLIR 600 + SLE + LGIR VG AR++AK++ + + +E+ N+ Sbjct: 513 SKQRSLENLLHGLGIRFVGRTSARNIAKHFRTLEKIRTATVEELQNVTD----------- 561 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VG+ I +++ EF+ P ++ L+ P+ + V + + + V TGTL Sbjct: 562 ---VGERIGKSVYEFFHTPLYTNEIDELVALGLPT--EFKGVVKTLFQGQTAVITGTLPN 616 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R +A++ + + G VS +S+KT ++ G+ GSKL KA +LG+ + +E + Sbjct: 617 MDRDEARKLIEENGGKVSGSVSKKTSWVLAGEAAGSKLTKANELGIPVHDEAWLM 671 >gi|310644240|ref|YP_003948999.1| DNA ligase, nad-dependent [Paenibacillus polymyxa SC2] gi|309249191|gb|ADO58758.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2] Length = 671 Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 222/721 (30%), Positives = 358/721 (49%), Gaps = 78/721 (10%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L E++ ++ YY P I D EYD L A+ + P+ P ++GG Sbjct: 7 MEQLVAELNTYNYHYYTLDDPQISDKEYDVLYDELVALEQTSGLVL----PDSPTQRVGG 62 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDN----SIFFTLEPK 133 E+ H P SL+K N+E LR + R+ + + K+ S + +E K Sbjct: 63 EILKGFTPHRHLAPLWSLDKAQNMEQLRAWNARVVKLVNDYNTKNPEQPLPSPGYAIELK 122 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRGE 190 DG + + Y G+ V A+ RG+G GE + A ++ I ++P L IP IEV+GE Sbjct: 123 FDGLTLNLTYTDGQLVQASTRGNGVVGEGILAQVKTIKSVP----LKIPFQNGTIEVQGE 178 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI 249 ++ + N++ + +P N RNAA+G LR LNP R LN F + +G I Sbjct: 179 GIMNLSVLSNYNEKAV----EPLKNARNAAAGALRNLNPKVTAERRLNAFFYNVGYADRI 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 EM+ +R F VN + + F ++ E++ R+ L Y IDG V K+ + Sbjct: 235 QFNSHQEMMTFLRENHFKVNPYLTYFDNFDDVMEQLIEIEESRAGLDYLIDGAVLKITDM 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++ LG + PRW +++KF ++ +T L ++ +GRTG +TP+AR+EPV + G + Sbjct: 295 RTREVLGYTDKFPRWAVAYKFEAEETTTVLNSVEWNVGRTGKITPLARVEPVELAGVTVQ 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 N TL+N +G + R +G RV ++R+ +VIP+++ + +E D + Sbjct: 355 NCTLNN---------AGDIERKNLKFALGARVFIRRSNDVIPEILGKVTSEN--DGEEIV 403 Query: 430 FPSFCPIC----QSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIE 484 P CP C Q R AH C L C Q + R+ HF SRDA +IE Sbjct: 404 VPEHCPACGFPLQQR-------------GAHLFCDNKLGCKPQIVARISHFASRDAMDIE 450 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 + + D +R PAD++TL Q K+E FG+ NL ++ K Sbjct: 451 TFSDKTA---IQLHD-ELGVREPADLYTL---QYDDLVKLER---FGEKKANNLLAALEK 500 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + L F+++LGI + G R LA++Y ++++ ++ D+ LI +P V Sbjct: 501 SKERDLASFLYALGIPNTGKATTRMLAEHY-------RDLHKTMSATVDE---LIELPDV 550 Query: 605 GDIIAQAIVEFYQNPRNICAVEALL----KEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 G I+A++IV F+ +P +E +L K +P K + S K +V TGTL + Sbjct: 551 GGIVAESIVAFFADPFTQAGIEKMLSLGVKAQAPE-APQVKKIDSFFSGKTVVLTGTLHQ 609 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV-KIMNEEQFLFLLQ 719 + R +A + LGA V+ +S+KTD++I G+ GSKL KAQQLG+ I +E++F+ LL+ Sbjct: 610 LTRDEAASRLEALGAKVAGSVSKKTDLVIAGEKAGSKLAKAQQLGIDTIEDEDEFIRLLE 669 Query: 720 Q 720 Q Sbjct: 670 Q 670 >gi|153940260|ref|YP_001392616.1| NAD-dependent DNA ligase LigA [Clostridium botulinum F str. Langeland] gi|166215578|sp|A7GIK6|DNLJ_CLOBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152936156|gb|ABS41654.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. Langeland] gi|295320603|gb|ADG00981.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. 230613] Length = 664 Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 214/704 (30%), Positives = 361/704 (51%), Gaps = 58/704 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +E++ + YY P I D EYD LK I ++ P P ++ Sbjct: 6 EKMKELVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKKTEVTL---PYSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132 G ++ K TH SL+K N+E L ++ R + ++ + S + + + Sbjct: 62 GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121 Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + Y E G + +A RG G GED++A I+ I T+P L + +IEV GE Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNSYVIEVHGEA 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 ++K F +E + P N RN A+G LR L+ + R L+ F + +G Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPE 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K EM+ +R +G P + +++ + ++SIR L YDIDG V VD+ Sbjct: 236 FKSYREMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIVVDDIK 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG + Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+N D IK +++++G +VLV+R+ +VIP+++ +V E +++ Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESEEIQA 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +V++ + C L+C Q ++ + HF SR+A NI G ++ Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKT 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ D I+ AD++ +++ + + K F D NL D+I +N L Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNSKNCDL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 FI++LGI +VG + A L + ++ N I L+ VP VG+I+A+ Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I +F+++ + I +E LL E+ + +K +V TG+L R + ++ + Sbjct: 556 SIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGEIKDKL 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659 >gi|168179082|ref|ZP_02613746.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916] gi|182670115|gb|EDT82091.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916] Length = 664 Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 214/704 (30%), Positives = 360/704 (51%), Gaps = 58/704 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +E++ + YY P I D EYD LK I ++ P P ++ Sbjct: 6 EKMKELVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKKTEVTL---PYSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132 G ++ K TH SL+K N+E L ++ R + ++ + S + + + Sbjct: 62 GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121 Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + Y E G + +A RG G GED++A I+ I T+P L + +IEV GE Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNNHVIEVHGEA 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 ++K F +E + P N RN A+G LR L+ + R L+ F + +G Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPE 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K EM+ ++ +G P + +++ + ++SIR L YDIDG V VD+ Sbjct: 236 FKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIVVDDIK 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG + Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+N D IK +++++G +VLV+R+ +VIP+++ +V E +++ Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESEEIQA 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +V++ + C L+C Q ++ + HF SR+A NI G K+ Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSKKT 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ D I+ AD++ +++ + + K F D NL D+I +N L Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNSKNCDL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 FI++LGI +VG + A L + ++ N I L+ VP VG+I+A+ Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I +F+++ + I +E LL E+ + K +V TG+L R + ++ + Sbjct: 556 SIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGEIKDKL 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659 >gi|170756080|ref|YP_001782894.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B1 str. Okra] gi|254781294|sp|B1ING1|DNLJ_CLOBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169121292|gb|ACA45128.1| DNA ligase, NAD-dependent [Clostridium botulinum B1 str. Okra] Length = 664 Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 213/704 (30%), Positives = 361/704 (51%), Gaps = 58/704 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +E++ + YY P I D EYD LK I ++ P P ++ Sbjct: 6 EKMKELVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKKTEVTL---PYSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132 G ++ K TH SL+K N+E L ++ R + ++ + S + + + Sbjct: 62 GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121 Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + Y E G + +A RG G GED++A I+ I T+P L + +IEV GE Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNSHVIEVHGEA 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 ++K F +E + P N RN A+G LR L+ + R L+ F + +G Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPE 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K EM+ ++ +G P + +++ + ++SIR L YDIDG V VD+ Sbjct: 236 FKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIVVDDIK 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG + Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+N D IK +++++G +VLV+R+ +VIP+++ +V E +++ Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESEEIQA 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +V++ + C L+C Q ++ + HF SR+A NI G ++ Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKT 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ D I+ AD++ +++ + + K F D NL D+I +N L Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNSKNCDL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 FI++LGI +VG + A L + ++ N I L+ VP VG+I+A+ Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I +F+++ + I +E LL E+ + +K +V TG+L R + ++ + Sbjct: 556 SIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVTGSLNNYSRGEIKDKL 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659 >gi|284037426|ref|YP_003387356.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74] gi|283816719|gb|ADB38557.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74] Length = 696 Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 220/731 (30%), Positives = 363/731 (49%), Gaps = 72/731 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L ++ ++ YYQ S + D +D L A+ + +P+ + P+ P ++ Sbjct: 5 EQIIDLTNRLNQYNFQYYQNSISEVDDFTFDKLLADLTALENQYPEFRQ---PDSPTARV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKIDGT 137 GG ++ V H P LSL ++ EDL +F R+ QK + + + E K DG Sbjct: 62 GGTISKEFKTVYHRFPMLSLGNTYSEEDLIEFDKRV----QKGLNGQTYEYICELKFDGV 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL------NIPE-------- 183 +++ YE G V A RGDG G+D++ IR I T+P + PE Sbjct: 118 ALSLTYENGVLVQGATRGDGVRGDDITNNIRTIRTVPLRIGAGHKATHTQPESAPAVAAL 177 Query: 184 --IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240 + EVRGE ++ +F +N E +G ANPRNAASG ++ + + R L+ ++ Sbjct: 178 PALFEVRGEGFLPLAEFDRINKEREDIGEPLLANPRNAASGTFKQQDSGAVAKRRLDCYL 237 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + ++IF + E L M GF V+ R+ +++Y NE ++ R LP D Sbjct: 238 YSFLSDTDIFQTHE-ESLVAMNAWGFNVSPTWRKCTDIQEVMAYINEWETKRFDLPLGTD 296 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V KV+ + Q+ LG A+SPRW I+ K+ AST L I Q+GRTG +TPVA L P Sbjct: 297 GIVIKVNRYDQQRDLGYTAKSPRWAIAFKYKAMAASTELNGIQYQVGRTGAVTPVALLTP 356 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G ++ A+LHN + I+ L G +M D V V++ GE+IPK+ + +N Sbjct: 357 VLLAGTIVKRASLHNANEIERL---GVMMH--------DTVFVEKGGEIIPKITGVDLNR 405 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R +QP +P+ CP C + +VR K G+ A C C Q+ R +HF+ R A Sbjct: 406 RTDKSQPIVYPTTCPACGTALVR----KEGE--AHFYCPNEQGCPPQRQARFEHFIQRRA 459 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI--------ENILGFGD 532 NIE LG+ +++ D ++ PAD++ L+ K+ + ++ F + Sbjct: 460 MNIESLGEGKIELLI---DRGL-VQTPADLYDLKATDLLGIEKVFLVEETGKKRVVSFRE 515 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 +V N+ +I + ++ +F LGIR+VG A L Y+ S A N Sbjct: 516 KTVENILTAIERSKSQPFANVLFGLGIRYVGNTTAEKLVDYFGSMD----------AIMN 565 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IE 648 L+ VP G IA+++V ++ + N VE L +G EK V + + Sbjct: 566 ATQEQLLAVPDTGPRIAESVVAWFGDTANQEFVERLRAAGLQFVG--EKKVVEQEGDSLT 623 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707 K ++TGT R + + + G + + +S+K + +IVG+N G SK+EKA++L V Sbjct: 624 GKTFLYTGTFANFSREELESRIEANGGKLLSGISKKLNYLIVGENAGPSKVEKAKKLNVP 683 Query: 708 IMNEEQFLFLL 718 ++ E++F+ +L Sbjct: 684 MIGEDEFMAML 694 >gi|116514984|ref|YP_802613.1| DNA ligase [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285620|sp|Q058C9|DNLJ_BUCCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116256838|gb|ABJ90520.1| DNA ligase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 587 Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 197/616 (31%), Positives = 324/616 (52%), Gaps = 46/616 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L+ +I YH+ Y+ PII D YD L + + + + L+++G Sbjct: 7 QILKLQLQIKYHNYMYHTLDSPIISDILYDELYNKLLQLEKLYFKKKSLDKKIKLLDQVG 66 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + + H IP LSL I NI D F +I ++ K N I + + K DG + Sbjct: 67 AKKLHIFTEFFHKIPMLSLRSINNISDFDLFDKKIKEYF--KHINVITYFCDFKFDGLAV 124 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR-VLSLNIPEIIEVRGEVYISKNDF 198 + Y+ G + A+ RG+G GE+++ I I +IP+ + NIP+ IE+RGE+++ K+DF Sbjct: 125 NLFYKNGILISASTRGNGSVGENITKNILMISSIPKKIAGSNIPKKIEIRGEIFMRKSDF 184 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG---KTSEIFAKGQ 254 LN G+K ++NPRNAA+G +R+LNP + R LNFFV+G G +I Sbjct: 185 FILNQSCKLSGKKEFSNPRNAAAGSVRQLNPEIVKKRKLNFFVYGFGLFDYNKKI--DSH 242 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 Y+ L +++ GFP+ ++ +Y+ IRS L ++IDG+V K+D LQ Sbjct: 243 YQRLLQIKKWGFPLYKNYCVCKNKKEVIHFYHYANKIRSQLDFEIDGIVIKLDSIKLQNN 302 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG + P+W I+ KF T++ I ++GRTGI+TPVA P+N+ G I+ A+L+ Sbjct: 303 LGCIEKYPKWAIALKFFSLDKETKIFKISFKVGRTGIITPVAYFFPINLFGVSISKASLY 362 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N IK L DIR+ D V V RAG+VIPK+ ++++++R+ Q P++C Sbjct: 363 NIKTIKLL-----------DIRLHDYVTVYRAGDVIPKIRNVLIHKRNKYTQKIIIPTYC 411 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C ++++ + KT C +C +Q ++RL +F S++ N +GLGK+ + Sbjct: 412 PSCCTKLIFSDDLKTC------YCPASFSCFSQNVKRLIYFSSKNGLNFKGLGKKNI--- 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 K + + + P D F+L + K++NI GD + +I + +SL++FI Sbjct: 463 IKLINYGY-LYTPIDFFSL------TVKKLKNIFRMGDKLSEKIIKNIAFSKRVSLDKFI 515 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 SLGI VG IA+ LA YY S + F N ++ +L ++ +G I+ AI+ Sbjct: 516 CSLGIFGVGTSIAKRLAYYYRSVEKFF----------NTNYDTLSKIDHIGYNISNAIIS 565 Query: 615 FYQNPRNICAVEALLK 630 F +N N + L++ Sbjct: 566 FLKNKSNRSIILKLIR 581 >gi|118474676|ref|YP_892270.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp. fetus 82-40] gi|166215570|sp|A0RPY7|DNLJ_CAMFF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118413902|gb|ABK82322.1| DNA ligase, NAD-dependent [Campylobacter fetus subsp. fetus 82-40] Length = 645 Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 220/687 (32%), Positives = 351/687 (51%), Gaps = 70/687 (10%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P+ D EYD L PDL S P N+IGGE+ K++H Sbjct: 19 AYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSYSPT---NRIGGEILDEFKKISH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 +EK+W++ED+ + + + + D F EPK DG + + YE G + AA Sbjct: 74 ----IEKMWSMEDIFS-DSELVAWISRGDKTDCEFFAEPKFDGASLNLLYENGNLISAAT 128 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GEDV+ + I ++P L ++ + IE+RGEV I+K+DF +N E P Sbjct: 129 RGDGSVGEDVTNNAKVISSVP--LQIDYKDKIEIRGEVVITKDDFELINIERSKNSEPPL 186 Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L+ + R L F+ G+G+ S F K +++ +R LGF +N Sbjct: 187 ANPRNAAAGSLRQLDNGIVKQRKLKFYPWGVGENSLKFNK-HSQIMDFVRSLGFLHDNFC 245 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 + + Y E+ S+R P +DG+V +V++ S QLG + P++M+++KF Sbjct: 246 KVIRGIDELKIAYKELLSVRELKPILMDGMVIRVNDLSKANQLGYTVKFPKFMVAYKFPA 305 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + + RL+DI +Q+GRTG++TPV L+ V I GA I N TLHN D I L+ +M+ Sbjct: 306 TEKTARLIDILLQVGRTGVVTPVGLLDGVLIDGAFIKNVTLHNFDEIDRLN----LMK-- 359 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 D V V R+G+VIPK+ + + R P CP C + ++ + G Sbjct: 360 -----NDFVTVIRSGDVIPKITGVFKDRRDGSQSEIIRPKICPKCGNELLDE-----GVF 409 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 + +C L C A+ + + +F S+ NI+GLG ++ ++ I DI Sbjct: 410 I---KCQ-NLTCKARVVSSIIYFASKKCMNIDGLGDAIVELLYQK-------NIIKDIAD 458 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 + R + S +E GF ++NL +IN + +L++FI SLGI H+G A+ +A Sbjct: 459 IYRLDELSFIGLE---GFKTKKISNLLSAINNSKTPNLDKFIASLGIEHIGEVAAKKIAN 515 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-----VGDIIAQAIVEFYQNPRNICAVEA 627 Y D WL L L G+ +A + +EF + N+ ++ Sbjct: 516 NY-----------------GDRWLELTLEELLALDGFGEAMALSYLEFMR--VNLEKIKE 556 Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 LL+ ++P + E ++ K +V TGTL + R + + + GA VS+ +S+KTD Sbjct: 557 LLEFITPKMQNLELK-TNIFSGKTVVITGTLSR-SRDEFKAELESYGAKVSSSVSKKTDF 614 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQF 714 ++ G+ GSKLEKA +LGV+ ++E ++ Sbjct: 615 VLYGNEAGSKLEKANELGVRAIDESEY 641 >gi|322807581|emb|CBZ05156.1| DNA ligase [Clostridium botulinum H04402 065] Length = 664 Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 213/704 (30%), Positives = 361/704 (51%), Gaps = 58/704 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +E++ + YY P I D EYD LK I ++ P P ++ Sbjct: 6 EKMKELVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKKTEVTL---PYSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132 G ++ K TH SL+K N+E L ++ R + ++ + S + + + Sbjct: 62 GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121 Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + Y E G + +A RG G GED++A I+ I T+P L + +IEV GE Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNDHVIEVHGEA 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 ++K F +E + P N RN A+G LR L+ + R L+ F + +G Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPE 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K EM+ ++ +G P + +++ + ++SIR L YDIDG V VD+ Sbjct: 236 FKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIVVDDIK 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG + Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+N D IK +++++G +VLV+R+ +VIP+++ +V E +++ Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESEEIQA 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +V++ + C L+C Q ++ + HF SR+A NI G ++ Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKT 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ D I+ AD++ +++ + + K F D NL D+I +N L Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNSKNCDL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 FI++LGI +VG + A L + ++ N I L+ VP VG+I+A+ Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I +F+++ + I +E LL E+ + +K +V TG+L R + ++ + Sbjct: 556 SIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMSKTIVVTGSLNNYSRGEIKDKL 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659 >gi|304440548|ref|ZP_07400435.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371026|gb|EFM24645.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 650 Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 214/705 (30%), Positives = 355/705 (50%), Gaps = 75/705 (10%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PNG 73 EL L + SYH YY +P++ D EYD L + +L + E P+ Sbjct: 7 ELVELLNKYSYH---YYTLDEPLVADVEYDRL----------YDELVKLEKETGYIRPDS 53 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P N++GGE+ K TH P S++K + ++LR + R R D I + +E K Sbjct: 54 PTNRVGGELLTGFVKHTHLSPLYSMDKAQSFDELRAWEERNMRLLPGVKD--IDYVVELK 111 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG I + Y G A+ RG+G GE++ ++ I ++P LS+ + EV+GE + Sbjct: 112 FDGLTINLTYNNGILENASTRGNGLIGEEILPQVKTINSVP--LSIEYKGLFEVQGEGLM 169 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF--FVHGLGKTSEIFA 251 F N+ + NPRNAA+G LR L+P +TR N + + +G Sbjct: 170 PFKAFNKYNE----TAEEVLKNPRNAAAGALRNLDPK-VTRKRNLDAYFYNVGYIEGREF 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K EM + +R F VN + N+++ +R +L IDG KVD++SL Sbjct: 225 KTDTEMKEFLREQKFKVNPIYYHVKNIDEAIECINKIEEMRDSLDVLIDGATIKVDDYSL 284 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG + PRW +++K+ K+ +T+LLD+ +GRT +TP A LEPV IGG I A Sbjct: 285 RERLGYTNKFPRWAVAYKYEAKEVTTKLLDVIWNVGRTAKVTPSAILEPVEIGGVTIQRA 344 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TL+N D I+ + +R+G RVL++R+ +VIP+++ + ++ + P Sbjct: 345 TLNNFDDIQ-----------RKKLRLGSRVLLRRSNDVIPEILGAVPSDEK--TEEIKLP 391 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP C S + +D H C L+C Q + R+ HF SRDA NIEGL + Sbjct: 392 THCPYCGSELYKD---------GVHIFCPNTLSCLPQLIGRIVHFTSRDAMNIEGLSDKT 442 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 D I+ +D++ + + S + GF D NL + + K ++++L Sbjct: 443 AAVLISDLD----IKEVSDLYDITKENLMS------LEGFKDKKSDNLLEQLEKSKDVNL 492 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 F+++LGI +VG + AR LA ++ S + L+ + VG I A Sbjct: 493 SNFVYALGIHNVGIKAARDLADHFKSLEGLMNATEE----------ELVSIDDVGPITAH 542 Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I EF+ + R +++ L+ ++P K+ +S K+V TG L + ++ +E Sbjct: 543 EIYEFFHDERIKDSIKKLIDHGITPKYVDVAKDSNSNFAGLKIVLTGKLSRPRKEIEKEL 602 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 ++ LGA V +S+ TD++I+G+N GSK +KA++LG+KI++E+ + Sbjct: 603 LS-LGAEVVGSVSKNTDLVIIGENAGSKADKARELGIKIIDEKTY 646 >gi|237739847|ref|ZP_04570328.1| NAD-dependent DNA ligase [Fusobacterium sp. 2_1_31] gi|229423455|gb|EEO38502.1| NAD-dependent DNA ligase [Fusobacterium sp. 2_1_31] Length = 594 Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 207/634 (32%), Positives = 342/634 (53%), Gaps = 48/634 (7%) Query: 96 LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRG 155 LSL +NI ++ FI RI + K + + + LE K+DG I++ Y +GK V A RG Sbjct: 2 LSLANSYNIGEVVDFIERIKKRISK--EQELKYCLEVKLDGLSISLTYIQGKLVRAVTRG 59 Query: 156 DGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYAN 215 DG GEDV+ I I ++ + L + IE+RGE+ + F LN E + G + +AN Sbjct: 60 DGFIGEDVTENILQIASVVKTLPQALD--IEIRGEIVLPLASFEKLNKERLEKGEELFAN 117 Query: 216 PRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274 PRNAASG LR+L+P + R L+ + + L + ++ K E ++ + +G Sbjct: 118 PRNAASGTLRQLDPKIVKERALDAYFYFLVEADKLGLKSHSESMKFLESMGIKTTGIFEL 177 Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334 I + + R LPY+ DGLV KVDE +L ++G +++PRW I++KF Q Sbjct: 178 LENSKDIEQRIDYWEKERENLPYETDGLVIKVDEINLWDEIGYTSKTPRWAIAYKFPAHQ 237 Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394 ST L D+ Q+GRTG LTPVA LE V + G+ + A+LHN I+ +D Sbjct: 238 VSTVLNDVTWQVGRTGKLTPVAELEEVELSGSKVKRASLHNISEIQ-----------RKD 286 Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 IR+GDRV +++A E+IP+VV I ER + + P CP+C ++ R+ + Sbjct: 287 IRIGDRVFIEKAAEIIPQVVKAIKEERTGNEKTIEEPINCPVCNHKLEREEG------LV 340 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514 +C C A+ +++FVSRDA NI GLG + ++ F D + I+ DI+ L+ Sbjct: 341 DIKCVNE-ECPAKIQGEIEYFVSRDALNIMGLGSKIVEKFI---DLGY-IKTVVDIYDLK 395 Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 ++ +ENI G S+ NL +SI + +N ++ I++LGI +G ++ LAK Sbjct: 396 NHRED----LENIDKMGKRSIENLLNSIEESKNREYDKVIYALGIPFIGKVASKVLAKA- 450 Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK---- 630 ++ I+ +++ ++ L + +G+I A I+ F++ + V AL + Sbjct: 451 ------SKNIDKLMSMTFEE---LTSIEGIGEIAANEIIAFFKKEKTQKLVAALKEKGLK 501 Query: 631 -EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 E++ S + E N++ K +FTGTL+ R + +E + +LG + +S+ D +I Sbjct: 502 FEITESETKVE-NLNPNFAGKNFLFTGTLKHFTREQIKEEIEKLGGKNLSSVSKNLDYLI 560 Query: 690 VGDNPGSKLEKAQQL-GVKIMNEEQFLFLLQQYN 722 VG+ GSKL+KAQ++ +KI+ EE+F+ L +++ Sbjct: 561 VGEKAGSKLKKAQEIPTIKILTEEEFIELKDKFD 594 >gi|226950696|ref|YP_002805787.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto] gi|254781293|sp|C1FLS8|DNLJ_CLOBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|226842063|gb|ACO84729.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto] Length = 664 Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 213/704 (30%), Positives = 360/704 (51%), Gaps = 58/704 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +++ L +E++ + YY P I D EYD LK I ++ P P ++ Sbjct: 6 EKMKELVEELNQYAYEYYVLDNPSISDKEYD-LKYDELVILEKKTEVTL---PYSPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEP 132 G ++ K TH SL+K N+E L ++ R + ++ + S + + + Sbjct: 62 GDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVTK 121 Query: 133 KIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + Y E G + +A RG G GED++A I+ I T+P L + +IEV GE Sbjct: 122 KFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVP--LKIKNNHVIEVHGEA 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 ++K F +E + P N RN A+G LR L+ + R L+ F + +G Sbjct: 180 IMTKTAF----EEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPE 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K EM+ ++ +G P + +++ + ++SIR L YDIDG V VD+ Sbjct: 236 FKSYREMMNFIKNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIVVDDIK 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG + P+W I++KF K+ +T+LLD++ +GR+G +TP A LEPV +GG + Sbjct: 296 TREILGYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKR 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+N D IK +++++G +VLV+R+ +VIP+++ +V E +++ Sbjct: 356 ATLNNMDDIK-----------RKNVKLGAKVLVRRSNDVIPEIMG-VVEESLEESEEIQA 403 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +V++ + C L+C Q ++ + HF SR+A NI G ++ Sbjct: 404 PDRCPYCNSHLVQN--------GVHYYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKT 455 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ D I+ AD++ +++ + + K F D NL D+I +N L Sbjct: 456 AEQLFEKLD----IKSIADLYKIKKEELLTLEK------FKDKKSQNLIDAIQNSKNCDL 505 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 FI++LGI +VG + A L + ++ N I L+ VP VG+I+A+ Sbjct: 506 ASFIYALGIPNVGKKTANDLV---MKFKTLESIKNTTIEQ-------LVEVPDVGEIVAK 555 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 +I +F+++ + I +E LL E+ + K +V TG+L R + ++ + Sbjct: 556 SIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVTGSLNNYSRGEIKDKL 615 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 LGA VS+ +S+ TD ++VG+ PGSK EKA +LGVK++NEE+F Sbjct: 616 QSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEF 659 >gi|319441119|ref|ZP_07990275.1| NAD-dependent DNA ligase LigA [Corynebacterium variabile DSM 44702] Length = 702 Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 220/720 (30%), Positives = 358/720 (49%), Gaps = 65/720 (9%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 S+L EI +H D YY Y +P+I D+E+D + R ++ P++ P + + Sbjct: 33 SALAAEIRHHRDLYY-YREPVITDAEFDTMMRELQSLEAEHPEVVTGPSPTTEVAQP--P 89 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 +N V H LSL+ +++ +L++++ R S + E KIDG I + Sbjct: 90 VNSPFRNVAHREQMLSLDNVFDGGELKEWLDRT---------PSETYLTELKIDGASIDL 140 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS----LNIPEIIEVRGEVYISKND 197 Y G+ A RGDG +GED++ R I IP LS +P ++E+RGE++I+ D Sbjct: 141 LYLDGRLETALTRGDGVTGEDITHNARTISDIPDRLSGTEEFPVPAVVEIRGEIFITVED 200 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F +N + A G+K +ANPRNAA+G +R+ NP + R L HGLG Q++ Sbjct: 201 FATMNADRQAEGKKMFANPRNAAAGAMRQKNPAETAKRPLKLICHGLGAREGFEPASQHD 260 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + + G PV+ +Q ++ +++ R +++DGLV KVD Q+ LG Sbjct: 261 AYRAIEAWGLPVSPYTKQVHSAEEVIAQVGYWGEHRHDATHEMDGLVVKVDSLDEQEDLG 320 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN- 375 +R+PRW I++K+ ++A T + I I +GRTG TP A + P + G+ ++ ATLHN Sbjct: 321 ATSRAPRWAIAYKYPPEEAMTTVESIRIGMGRTGRATPFAVMSPTPVAGSTVSMATLHNP 380 Query: 376 -EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 E + KG IR+GDRV++++AGEVIP+V+ + + R + F F S C Sbjct: 381 TEAHRKG-------------IRLGDRVMIRKAGEVIPEVLGPVEDVRDGSEREFVFSSVC 427 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + + T + A RC C Q RL + R AF+I+ LG++ Sbjct: 428 PECGTPLA-----PTKEGDADWRCPNTRYCPGQLQNRLNYLAGRGAFDIDALGER----- 477 Query: 495 FKSEDPAFSIRIPAD--IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + D S +P + +F+L TST G + L D++ + + + L R Sbjct: 478 -AASDLIASGVLPDEGRLFSLSADDLTSTNAYTTKAGKLNRPGELLLDNLEEAKQVDLWR 536 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 I +L IRHVG A++LA S I A + + + VG IIAQ++ Sbjct: 537 VITALSIRHVGPTAAKALAATLQS----------IPAIDKASVEEMAEIDGVGGIIAQSV 586 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKL-----VFTGTLQKIQRHKA 666 +++ + V+A + + R E+ V +S++ + L V TG+L+ R A Sbjct: 587 KDWFAVDWHREIVDAW----ADAGVRMEQIVEASDLPEQTLAGLTVVVTGSLENFDRTSA 642 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLR 726 +E V G + +S+ TD ++ G+ GSKL KA+ LGV +++E F LL + +R Sbjct: 643 KEAVESRGGKAAGSVSKNTDFLVAGEKAGSKLTKAEDLGVPVLDEAGFEKLLAEGPDAVR 702 >gi|301633469|gb|ADK87023.1| DNA ligase (NAD(+)) [Mycoplasma pneumoniae FH] Length = 658 Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 207/702 (29%), Positives = 356/702 (50%), Gaps = 63/702 (8%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ ++ +++ +D YY P++ D EYD L ++ A+ A P+L + P+ P ++G Sbjct: 6 QIRAIVEQLKRYDYHYYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQ---PDSPTQRVG 62 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G + + K H P LSL+ ++ + FI I ++ F +EPKIDG I Sbjct: 63 GIVVEAFNKFPHQNPMLSLDNAFDTATIASFIANINNLTGVQNR----FVVEPKIDGVSI 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ YE G A RGDG GEDV + ++ I +IP L++ + +E+RGE+++ K F Sbjct: 119 SLTYENGLLTRALTRGDGLVGEDVLSNVKTIKSIP--LTIPFHKQVEIRGEIFVDKKTFA 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N+ + KP+AN RN A+G LR LN R L F + + + + Q +L Sbjct: 177 QINENL----AKPFANARNLAAGTLRNLNSEVSAKRKLKAFFYFVPNALTLGCRSQSAVL 232 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 +++ FPV+ V + ++ Y ++ R L + +DGLV K+D F QLG Sbjct: 233 AQLKQWNFPVSKAVASFDRPEALIEYLDQFDQTRDQLNFQVDGLVVKLDNFHFYDQLGFT 292 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++ PRW +++KF K T+L + + +GRTG + A+L+PVN+ G +++ ATLHN DY Sbjct: 293 SKFPRWALAYKFKPKFVQTKLRGVLVTVGRTGKINYTAQLDPVNLEGTVVSAATLHNFDY 352 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 IK +DIR+ D V++ +AGE+IPKV+++ + R QP + CP CQ Sbjct: 353 IK-----------EKDIRLNDTVIIYKAGEIIPKVLEVCLPLRTAANQPIPEQTHCPACQ 401 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + +V+ K CT C + LE + +FVS+ A +I+GL Q + +++ Sbjct: 402 APLVQ------YKDEVDQYCTNE-RCDQRNLEAINYFVSKTAMDIQGLSIQTISKLYENN 454 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 +R D++ L + + + +E L G+V L SI + + + R + LG Sbjct: 455 ----LVRSVVDLYHL-KEHKAAVLALE--LKIGEVLFNKLISSIEQSKTKGMARLLTGLG 507 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I+HVG +A+SL K++ NI A + +L+ +P VG +A+++ ++ N Sbjct: 508 IKHVGQVLAKSLTKHF----------ENIDALQSASMETLLELPDVGPTVAESLFNWFHN 557 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTL----QKIQRHKAQEYV 670 N+ + A LK V + + N + + + K V TG+ I+ A +Y Sbjct: 558 DNNLQLLAA-LKAVGVQMDALKSNTNFDTASIYFQKSFVITGSFPISRDTIKNLLANKYD 616 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNE 711 + V++ K D ++ G KLE+A+ L + I+NE Sbjct: 617 CRFTNNVTS----KVDFVLAGIKATPRKLEQAKALNIPIINE 654 >gi|302380539|ref|ZP_07269004.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3] gi|302311482|gb|EFK93498.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3] Length = 662 Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 210/713 (29%), Positives = 371/713 (52%), Gaps = 82/713 (11%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 K L + + +YH YY P+I DSEYD L + +L E PN Sbjct: 8 KYLVDILNKYAYH---YYTLDDPLIADSEYDVL----------YDELVNLEKETGIVLPN 54 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIYRFWQKKDDN------S 125 P N+IGGE+ LS F+ + TL SL K + E++R ++ + F + ++N Sbjct: 55 SPTNRIGGEV-LSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVENYNENHVNKLPK 113 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + F +E K DG + + Y+ G V A RG+G GE +++ ++ I +IP L + ++ Sbjct: 114 VEFYVEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIP--LKIKDKRLM 171 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF--FVHGL 243 E++GE + + N N RNAA+G LR L+P+ +TR N + + + Sbjct: 172 EIQGEGVMPLSSLEKYN----KTHEPKLKNARNAAAGALRNLDPS-VTRERNLDAYFYNV 226 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + + Q EM++ + F + + A +F I + +E+ +R+ + DG+V Sbjct: 227 NYLQDNELETQEEMMKFLGDNYFKLYPYEKHATSFEEISKFIDEIFELRNEIDVLTDGVV 286 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++F +++LG + PRW I++KF ++ +T + +++ +GRTG +TP A LEPV I Sbjct: 287 IKVNDFKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEI 346 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + ATL+N D I+ + +R+ V V+R+ +VIP+++ +VN Sbjct: 347 GNVTVKRATLNNIDDIE-----------RKQVRLNSEVFVRRSNDVIPEIMG-VVNPDQE 394 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFN 482 D + P +CP C S + RD H C ++C+ Q ++R+ HF SR+A N Sbjct: 395 DTEEIEIPHYCPYCHSELFRD---------GVHIFCPNSMSCTPQLVKRMVHFASRNAMN 445 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GL ++ L+ + +I+ +I+ +++ Q + + GF + NL ++I Sbjct: 446 IDGLSEKTLEVLLEK----LNIKSIEEIYDVKKEQ------LMQLDGFKEKKSQNLINAI 495 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K +N+ L FIF+LGI +G + + LA+ Y S+ N + + LI++ Sbjct: 496 EKSKNVDLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIE 545 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKI 661 +G++IA+ IVEF+ + ++++LL S I ++ +N+ +++N V TG+L Sbjct: 546 DIGNVIAEEIVEFFHDETISNSIDSLL---SKGIKIKNPENIEKKLDNLTFVLTGSLVNY 602 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R + + ++ LGA VS+ +S+ TD ++ G+ GSKL KA+ LGVK+M E++ Sbjct: 603 SRKELTDKLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDEL 655 >gi|56807783|ref|ZP_00365637.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Streptococcus pyogenes M49 591] Length = 571 Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 194/590 (32%), Positives = 321/590 (54%), Gaps = 51/590 (8%) Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + E KIDG I++ YE G A RGDG+ GE+++ I+ I IP LS P I V Sbjct: 23 YLAELKIDGLSISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSE--PLTITV 80 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 RGE Y+S+ F A+N+ G +ANPRNAA+G LR+L+ + R L F++ + Sbjct: 81 RGEAYMSRQSFKAINEARQENGETEFANPRNAAAGTLRQLDTAVVAKRELATFLYQ--EA 138 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 S Q E+L ++ LGF VN + ++ I + +++ R L YDIDG+V KV Sbjct: 139 SPTARNQQNEVLAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKV 198 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + ++Q++LG ++PRW I++KF ++ +L +D +GRTG++TP A L PV + G Sbjct: 199 NSLAMQEELGFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGT 258 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATLHN DYI +DIR+GD V+V +AG++IP V+++++++R+ + Sbjct: 259 TVSRATLHNVDYI-----------AEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQ-E 306 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP C S +V + A RC L C + L+HF SRDA NI GL Sbjct: 307 VMLIPKLCPSCGSELVHFEDE------VALRCINPL-CPSLIQRSLEHFASRDAMNITGL 359 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSIN 543 G ++ F A + ADI+ L + EN + G + S L +I Sbjct: 360 GPAIVEKLF----LAGFVHDVADIYQLTK---------ENFMQLDGIKEKSADKLLAAIE 406 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 ++ S E+ +F LGIRH+G++++R + + Y +I+ ++ ++ + R+ Sbjct: 407 ASKSNSAEKLLFGLGIRHIGSKVSRLILEVY-------GDISALLTAKEEE---IARIDG 456 Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G IAQ++ ++++ V+ L V+ + N + + +V TG L ++ Sbjct: 457 LGSTIAQSLTQYFEQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLN 516 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 R++A++ + LGA V+ +S+KTD++I G + GSKLEKA+ LG++I +E+ Sbjct: 517 RNEAKDKLEALGAKVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDED 566 >gi|13508096|ref|NP_110045.1| DNA ligase [Mycoplasma pneumoniae M129] gi|2494169|sp|P78021|DNLJ_MYCPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|1674170|gb|AAB96127.1| DNA ligase [Mycoplasma pneumoniae M129] Length = 658 Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 204/698 (29%), Positives = 352/698 (50%), Gaps = 55/698 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ ++ +++ +D YY P++ D EYD L ++ A+ A P+L + P+ P ++G Sbjct: 6 QIRAIVEQLKRYDYHYYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQ---PDSPTQRVG 62 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 G + + K H P LSL+ ++ + FI I ++ F +EPKIDG I Sbjct: 63 GIVVEAFNKFPHQNPMLSLDNAFDTATIASFIANINNLTGVQNR----FVVEPKIDGVSI 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ YE G A RGDG GEDV + ++ I +IP L++ + +E+RGE+++ K F Sbjct: 119 SLTYENGLLTRALTRGDGLVGEDVLSNVKTIKSIP--LTIPFHKQVEIRGEIFVDKKTFA 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEML 258 +N+ + KP+AN RN A+G LR LN R L F + + + + Q +L Sbjct: 177 QINENL----AKPFANARNLAAGTLRNLNSEVSAKRKLKAFFYFVPNALTLGCRSQSAVL 232 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 +++ FPV+ V + ++ Y + R L + +DGLV K+D F QLG Sbjct: 233 AQLKQWNFPVSKAVASFDRPEALIEYLEQFDQTRDQLNFQVDGLVVKLDNFHFYDQLGFT 292 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 ++ PRW +++KF K T+L + + +GRTG + A+L+PVN+ G +++ ATLHN DY Sbjct: 293 SKFPRWALAYKFKPKFVQTKLRGVLVTVGRTGKINYTAQLDPVNLEGTVVSAATLHNFDY 352 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 IK +DIR+ D V++ +AGE+IPKV+++ + R QP + CP CQ Sbjct: 353 IK-----------EKDIRLNDTVIIYKAGEIIPKVLEVCLPLRTAANQPIPEQTHCPACQ 401 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + +V+ K CT C + LE + +FVS+ A +I+GL Q + +++ Sbjct: 402 APLVQ------YKDEVDQYCTNE-RCDQRNLEAINYFVSKTAMDIQGLSIQTISKLYENN 454 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 +R D++ L + + + +E L G+V L SI + + + R + LG Sbjct: 455 ----LVRSVVDLYHL-KEHKAAVLALE--LKIGEVLFNKLISSIEQSKTKGMARLLTGLG 507 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I+HVG +A+SL K++ NI A + +L+ +P VG +A+++ ++ N Sbjct: 508 IKHVGQVLAKSLTKHF----------ENIDALQSASMETLLELPDVGPTVAESLFNWFHN 557 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTLQKIQRHKAQEYVTQLG 674 N+ + A LK V + + N + + + K V TG+ + V + Sbjct: 558 DNNLQLLAA-LKAVGVQMDALKSNTNFDTASIYFQKSFVITGSFPISRDTIKNLLVNKYD 616 Query: 675 AVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNE 711 + ++ K D ++ G KLE+A+ L + I+NE Sbjct: 617 CRFTNNVTSKVDFVLAGIKATPRKLEQAKALNIPIINE 654 >gi|291320206|ref|YP_003515467.1| DNA ligase [Mycoplasma agalactiae] gi|290752538|emb|CBH40510.1| DNA ligase [Mycoplasma agalactiae] Length = 654 Score = 313 bits (802), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 229/707 (32%), Positives = 369/707 (52%), Gaps = 57/707 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+A++ + SL + I+ + YYQ +KP + D EYD + + PDL + N P Sbjct: 4 EKAKELIKSLVETINQWNYEYYQLNKPSVSDLEYDKALLELEKLEKEHPDLILN---NSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +IG + K H P LSL K +N +D+ FI I + ++ N F +EPKI Sbjct: 61 TFRIGSFASEKFTKFVHQKPMLSLAKAYNYDDINSFINNISKIVPTENIN---FNIEPKI 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + Y++GK V AA RGDG GEDV+ I I +IP+++ N +EVRGEV+I+ Sbjct: 118 DGLSIALHYKQGKLVKAATRGDGSEGEDVTENIYQIKSIPKLI--NYLNDLEVRGEVFIT 175 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 KNDF +N+ RNAASG LR+L+ + R L+ F++ + + + Sbjct: 176 KNDFKKINESNNFANA------RNAASGTLRQLDANIVAERNLSAFLYEIVEPEKHGIYY 229 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q+E L+ M+ L FP N + + N+ I++ L YD DGLV K+D+ + Sbjct: 230 QHEALEFMKNLNFPTN-PFSKVVEIEELEESINDFAEIKNKLDYDADGLVIKLDDLQMWD 288 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG+ ++ P+ I+ K+ + AS++++DI +GRTG +T +A + PV + + ATL Sbjct: 289 KLGKTSKFPKHSIAFKYDVEIASSKIIDILTSVGRTGKITYIANILPVLLNQTTVKAATL 348 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN ++IK + +I + D V + +AGE+IPKV+ + + + D + + Sbjct: 349 HNHNFIKDM-----------NININDEVNIIKAGEIIPKVISLKEEKNYVDY--YKKATN 395 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S++V + + CT C + + + HF SR+ NI GLG + Sbjct: 396 CPSCGSQLVE------FEGIVDQFCTND-ECPDKNINNIYHFASRNCLNIVGLGLSTVKD 448 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ P F I+ DIF L R + ++ + + D+ V N+ +SI +N + Sbjct: 449 FY----PKF-IKNIKDIFDLHRHR----AELIKLPRYRDLKVDNILNSIESAKNKKFSKV 499 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGI+H+G A+ +A +Y NFA+ +++ HN L L +G I ++++ Sbjct: 500 IFALGIKHIGQRAAKLIAD---NYANFAELLDD---HN---LLKLQNTKNIGPKIIESLI 550 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 EF +P N + A L + G+ K +S+ + V TG L + + H + Sbjct: 551 EFISSPAN-QDLLAFLDAIFNYEGK-AKVISTILSGYTFVITGVLSEPRSHFVKLIEEHS 608 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G V SAI S KT ++ G + GSKLEKA + G K++NEEQF L++Q Sbjct: 609 GNVSSAI-SSKTSYLLAGSDAGSKLEKAYKTGTKVINEEQFYDLIKQ 654 >gi|169824266|ref|YP_001691877.1| NAD-dependent DNA ligase LigA [Finegoldia magna ATCC 29328] gi|254781333|sp|B0RZW0|DNLJ_FINM2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167831071|dbj|BAG07987.1| NAD-dependent DNA ligase [Finegoldia magna ATCC 29328] Length = 662 Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 210/713 (29%), Positives = 370/713 (51%), Gaps = 82/713 (11%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 K L + + +YH YY P+I DSEYD L + +L E PN Sbjct: 8 KYLVDILNKYAYH---YYTLDDPLIADSEYDVL----------YDELVNLEKETGIVLPN 54 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIYRFWQKKDDN------S 125 P N+IGGE+ LS F+ + TL SL K + E++R ++ + F Q ++N Sbjct: 55 SPTNRIGGEV-LSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVQNYNENHVNKLPK 113 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + F +E K DG + + Y+ G V A RG+G GE +++ ++ I +IP L + ++ Sbjct: 114 VEFYVEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIP--LKIKDTRLM 171 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF--FVHGL 243 E++GE + + N N RNAA+G LR L+P +TR N + + + Sbjct: 172 EIQGEGVMPLSSLENYN----KTHEPKLKNARNAAAGALRNLDPA-VTRERNLDAYFYNV 226 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + + Q EM++ + F + + A +F + + +E+ +R+ + DG+V Sbjct: 227 NYLQDNELETQEEMIKFLGDNYFKLYPYEKHATSFEEVSKFIDEIFELRNEIDVLTDGVV 286 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++F +++LG + PRW I++KF ++ +T + +++ +GRTG +TP A LEPV I Sbjct: 287 IKVNDFKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEI 346 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + ATL+N D I+ + +R+ V V+R+ +VIP+++ +VN Sbjct: 347 GNVTVKRATLNNIDDIE-----------RKQVRLNSEVFVRRSNDVIPEIMG-VVNPDQE 394 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFN 482 D + P +CP C S + RD H C ++C+ Q ++R+ HF SR+A N Sbjct: 395 DTEEIEIPHYCPYCHSELFRD---------GVHIFCPNSMSCTPQLVKRMVHFASRNAMN 445 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GL ++ L+ + +I+ +I+ +++ Q + + GF + NL ++I Sbjct: 446 IDGLSEKTLEVLLEK----LNIKSIEEIYDVKKEQ------LMQLDGFKEKKSQNLINAI 495 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K +N+ L FIF+LGI +G + + LA+ Y S+ N + + LI++ Sbjct: 496 EKSKNVDLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIE 545 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKI 661 +G++IA+ IVEF+ + ++++LL S I ++ +N+ +++N V TG+L Sbjct: 546 DIGNVIAEEIVEFFHDETISNSIDSLL---SKGIKIKNPENIEKKLDNLTFVLTGSLVNY 602 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R + + ++ LGA VS+ +S+ TD ++ G+ GSKL KA+ LGVK+M E++ Sbjct: 603 SRKELTDKLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDEL 655 >gi|158319601|ref|YP_001512108.1| NAD-dependent DNA ligase LigA [Alkaliphilus oremlandii OhILAs] gi|190359226|sp|A8MLJ8|DNLJ_ALKOO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158139800|gb|ABW18112.1| DNA ligase, NAD-dependent [Alkaliphilus oremlandii OhILAs] Length = 661 Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 220/718 (30%), Positives = 363/718 (50%), Gaps = 71/718 (9%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+E+ R +L + E SY YY +P++ D EYD L + + + Sbjct: 3 SMERLR-QLVDILNEYSYQ---YYVLDEPVVSDKEYDQLYDELVLLEKELNTVLE----D 54 Query: 73 GPLNKIGGEMNLSLFKV-THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++GG++ L FK H P SL+K E+L + R+ R + I + +E Sbjct: 55 SPTIRVGGDV-LKNFKAHNHLAPLWSLDKCKTPEELISWDLRVRRLLEG-SGVPIEYVME 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRG 189 K DG + + Y G+ V AA RG+G +GE + ++ I TIP L IP IEV+G Sbjct: 113 YKFDGLTLNLTYNNGQLVQAATRGNGTTGEGILEQVKTIKTIP----LTIPHKGRIEVQG 168 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248 E + + A N + +P NPRNAA+G LR L+P R L+ F + +G Sbjct: 169 EGLMGLSVLAAYNKTAL----EPLKNPRNAAAGALRNLDPKVTAKRKLSAFCYNVGFYEG 224 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 I E+L ++ FPV+N ++ +T H ++ + +L + DGLV KV+ Sbjct: 225 IDFNTHMEILAFLKANKFPVSNYTKKFHTIHQVIEEIETIGEQVKSLDFLTDGLVIKVNH 284 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++ LG + PRW ++ KF ++ +T L D+ Q+GRTG LTP A LEP++IGG + Sbjct: 285 MEARRLLGYTQKFPRWAMAFKFEAEEMTTELKDVIWQVGRTGKLTPAAVLEPIDIGGVTV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATL+N + I+ + +++G RV ++R+ +VIP+++ I E A Sbjct: 345 SRATLNNWEDIQ-----------RKKVKIGCRVWIRRSNDVIPEIMGSI-EETLEGAMDI 392 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP C S VV AH C L+C Q + R+ H+ SRDA +I G Sbjct: 393 EKPQHCPACHSEVVER---------GAHIFCPNSLSCKPQLVSRIVHYASRDAMDIVGFS 443 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ + F+ ++R AD++ ++ + FGD NL ++I +N Sbjct: 444 EKTAEQLFEE----LNLRDLADLYEIKYEDLIKLPR------FGDKKARNLLEAIENSKN 493 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L+ F+++LGI +VG + A LAK+Y S+Q A ++ LI +P VGDI Sbjct: 494 CKLDSFVYALGIPNVGRKTATDLAKHYKSFQ----------AIQEAEFQELITLPDVGDI 543 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +AQ+I++F+++ +V L+ E + + + + K +V TGTL+K R + + Sbjct: 544 VAQSIIDFFEDEEIKKSVNRLINEGIRPLFKEVEQQENIFLGKTVVVTGTLEKYGRKEIK 603 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFLL 718 E + +LGA V+ +S+ TD ++ G+ GSKLEKA ++ ++I++E +F +L Sbjct: 604 ELLEKLGAKVTGSVSKNTDFLLAGEAAGSKLEKAMEIIASGVETSLRIISEAEFEAML 661 >gi|254779395|ref|YP_003057500.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B38] gi|254001306|emb|CAX29287.1| DNA ligase (NAD(+)) [Helicobacter pylori B38] Length = 656 Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 223/694 (32%), Positives = 354/694 (51%), Gaps = 68/694 (9%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY + I+ D+ YD L + A P+ ++ N P K+G S Sbjct: 18 LSHH---YYNLDESIVSDAVYDELYQELKAYEEENPNDIQA---NSPTQKVGAITTNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y GK Sbjct: 72 KNPHLMRMWSLDDVFNQSELQAWLQRILKVYP-----SASFVCSPKLDGVSLNLLYHHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 + A RG+G GE V+ + I IP ++ N IE+RGEV ISK DF ALN E + Sbjct: 127 LISATTRGNGLEGELVTNNAKHIANIPHFIAYNGE--IEIRGEVIISKKDFDALNQERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V V+E +QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVNELGIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEP+ I GA++ ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVNRATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 L C A+ E L HF S+DA NI+GLG + ++ F+ E F+ Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN-- 459 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVT---NLYDSINKRRNISLERFIFSLGIRHV 562 D++ L K+E+++ + NL D+I K +N L R I +LGI H+ Sbjct: 460 -ALDLYAL---------KLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHI 509 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY-QNPRN 621 G +++LA+Y L N++ + ++L + G +A ++V FY N Sbjct: 510 GKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMAHSLVNFYASNQEF 556 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 I ++ LL + + ++ SS +K +V TGTL K ++ AQ + LGA +++ + Sbjct: 557 IRSLFDLLNPKNSDMAEEKQKSSSVFSDKTIVLTGTLSKPRQEYAQ-MLENLGAKIASSV 615 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 S KT+ +I G+NPGSKL A++ GV ++NEE+ L Sbjct: 616 STKTNFLIAGENPGSKLALAKKHGVSVLNEEELL 649 >gi|4235374|gb|AAD13190.1| NAD-dependent DNA ligase [Thermus thermophilus] Length = 557 Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 188/523 (35%), Positives = 296/523 (56%), Gaps = 50/523 (9%) Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP+L + P+ P ++G + F+ V H SL+ +N ++L+ F RI R + Sbjct: 2 FPEL---KSPDSPTEQVGARPLEATFRPVRHPTRMYSLDNAFNFDELKAFEERIERALGR 58 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + +T+E K+DG + + YE G VY A RGDG GE+V+ + IPTIPR L Sbjct: 59 --EGPFAYTVEHKVDGLSVNLYYEDGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLK-G 115 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LN 237 +PE +EVRGEVY+ FL LN+E+ G + + NPRNAA+G LR+ +P + Sbjct: 116 VPERLEVRGEVYMPVEAFLRLNEELEERGARIFKNPRNAAAGSLRQKDPRITAKRGLRAT 175 Query: 238 FFVHGLGKTSEIFAKG---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 F+ GLG E+ +G Q+ +L ++ FPV +G +A G+ + Y + R Sbjct: 176 FYALGLG-LEEVEREGVATQFALLHWLKEKSFPVEHGYARAVGAEGVEAVYQDWLKKRRA 234 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LP++ DG+V K+DE +L ++LG AR+PR+ I++KF ++ TRLLD+ Q+GRTG +TP Sbjct: 235 LPFEADGVVVKLDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVAFQVGRTGRVTP 294 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 V LEPV + G+ ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ Sbjct: 295 VGILEPVFLEGSEVSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVL 343 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 ++ R + +P +P CP C R++ K GK+ HRC L C A++ E ++H Sbjct: 344 RVLKERRTGEERPIRWPETCPECGHRLL-----KEGKV---HRCPNPL-CPAKRFEAIRH 394 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---G 531 F SR A +I+GLG++ ++ + ++ AD++ L++ E+++G G Sbjct: 395 FPSRKAMDIQGLGEKLIERLLEK----GLVKDVADLYRLRK---------EDLVGLERMG 441 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 + S NL I + + LER +++LG+ VG +AR+LA + Sbjct: 442 EKSAQNLLRQIEESKRRGLERLLYALGLPGVGEVLARNLAARF 484 >gi|295698750|ref|YP_003603405.1| DNA ligase, NAD-dependent [Candidatus Riesia pediculicola USDA] gi|291157368|gb|ADD79813.1| DNA ligase, NAD-dependent [Candidatus Riesia pediculicola USDA] Length = 593 Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 195/613 (31%), Positives = 324/613 (52%), Gaps = 55/613 (8%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 LSSL ++I H Y+ K I D EYD + R+ D I + ++ E+ I Sbjct: 10 LSSLRKKIKKHQYLYHILGKSEIPDFEYDLMIRKLDRIEKEISEKSKKEEET-----ILS 64 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 ++ K+ H P LSL ++N + KF I + +++ I+F E KIDG + Sbjct: 65 DLRRRSKKIKHYSPMLSLNNVFNQHEYLKFYKNILKIINNQEER-IYFCCELKIDGLAVN 123 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----IPEIIEVRGEVYISK 195 + Y+ G+F A+ RG+G +GED+S+ I+ I IP LS+ +PE+IE+RGE+++ Sbjct: 124 LVYKNGEFHSASTRGNGETGEDISSKIQYIRDIP--LSIRNRKGYVPELIEIRGEIFMKF 181 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLG--KTSEIFA- 251 F N + +K ++NPR+AA G++++++ +I R LNFF +G G K + F Sbjct: 182 KKFQEFNSMLKKEKKKTFSNPRSAAIGLVKKVSQKEIIRESLNFFSYGCGLIKLNNTFES 241 Query: 252 -KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K Q+E L+ ++ P+ + + I+ YY + ++R L Y IDG+V KV+ F Sbjct: 242 PKNQFECLKMLKTWNVPIVENTKMYSCSKKILEYYKNIYNMRDQLDYGIDGIVIKVNSFI 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 QK +G + +P+W ++ KF K+ T LLD+ Q+GRTG++TP+A+++ ++ G I Sbjct: 302 YQKIIGHTSYAPKWSVAFKFPAKKKITTLLDVIFQVGRTGVITPIAKIDTISFNGIQINR 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 +LHN ++IK L I +GD+V+V AG++IPK+ I + F Sbjct: 362 VSLHNTNFIKDL-----------GIMIGDKVIVSIAGDIIPKITGKIFDSTSNHINEIVF 410 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P +CP C S + K GK+ RCTGGL+C +Q+ + HFVS+ A NI G+GK Sbjct: 411 PKYCPSCFSITQIE---KKGKI----RCTGGLSCLSQRESLINHFVSKKAINIIGIGKMT 463 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + + I P+D+++L+ S G + + +SI K +NI+L Sbjct: 464 VKKMVQKN----LISDPSDLYSLKFNDLLSLN------GITQATSKKILNSIEKSKNITL 513 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL--VGDII 608 ERF++SLGI VG +++ +A SYQ F + + + +L ++P +G I Sbjct: 514 ERFLYSLGIPGVGYVLSKKIASNSESYQFFLR------ISSGEKYLPC-KIPFKGIGKNI 566 Query: 609 AQAIVEFYQNPRN 621 + I+ F++ N Sbjct: 567 TENIISFFKKDHN 579 >gi|303234054|ref|ZP_07320703.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4] gi|302494979|gb|EFL54736.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4] Length = 662 Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 210/713 (29%), Positives = 370/713 (51%), Gaps = 82/713 (11%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 K L + + +YH YY P+I DSEYD L + +L E PN Sbjct: 8 KYLVDILNKYAYH---YYTLDDPLIADSEYDVL----------YDELVNLEKETGIVLPN 54 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIYRFWQKKDDN------S 125 P N+IGGE+ LS F+ + TL SL K + E++R ++ + F + ++N Sbjct: 55 SPTNRIGGEV-LSGFEKHEHLNTLYSLGKAQSKEEVRNWVDKTIEFVENYNENHVNKLPK 113 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + F +E K DG + + Y+ G V A RG+G GE +++ ++ I +IP L + ++ Sbjct: 114 VEFYVEFKFDGLTVDLTYDGGYLVMATTRGNGTIGEVITSQVKTINSIP--LKIKDTRLM 171 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF--FVHGL 243 E++GE + + N N RNAA+G LR L+P +TR N + + + Sbjct: 172 EIQGEGVMPLSSLENYN----KTHEPKLKNARNAAAGALRNLDPA-VTRERNLDAYFYNV 226 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + + Q EM++ + F + + A +F I + +E+ +R+ + DG+V Sbjct: 227 NYLQDNELETQEEMMKFLGDNYFKLYPYEKHATSFEEISKFIDEIFELRNEIDVLTDGVV 286 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV++F +++LG + PRW I++KF ++ +T + +++ +GRTG +TP A LEPV I Sbjct: 287 IKVNDFKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEI 346 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + ATL+N D I+ + +R+ V V+R+ +VIP+++ +VN Sbjct: 347 GNVTVKRATLNNIDDIE-----------RKQVRLNSEVFVRRSNDVIPEIMG-VVNPDQE 394 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFN 482 D + P +CP C S + RD H C ++C+ Q ++R+ HF SR+A N Sbjct: 395 DTEEIGIPHYCPYCHSELFRD---------GVHIFCPNSMSCTPQLVKRMVHFASRNAMN 445 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GL ++ L+ + +I+ +I+ +++ Q + + GF + NL ++I Sbjct: 446 IDGLSEKTLEVLLEK----LNIKSIEEIYDVKKEQ------LMQLDGFKEKKSQNLINAI 495 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K +N+ L FIF+LGI +G + + LA+ Y S+ N + + LI++ Sbjct: 496 EKSKNVDLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFEELIQIE 545 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKI 661 +G++IA+ IVEF+ + ++++LL S I ++ +N+ +++N V TG+L Sbjct: 546 DIGNVIAEEIVEFFHDETISNSIDSLL---SKGIKIKNPENIEKKLDNLTFVLTGSLVNY 602 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R + + ++ LGA VS+ +S+ TD ++ G+ GSKL KA+ LGVK+M E++ Sbjct: 603 SRKELTDKLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDEL 655 >gi|261749390|ref|YP_003257075.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497482|gb|ACX83932.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 678 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 223/715 (31%), Positives = 368/715 (51%), Gaps = 64/715 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ L +++S ++ YY + I D +D R + P+ DP+ P + Sbjct: 11 KEKIYQLRKKLSEYNYQYYALNTSEISDYNFDKKLRELFLLEKEHPEFY---DPSSPTLR 67 Query: 78 IGGE----MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 IG E + S++ H SL+ ++ ++L + RI QK +S F E K Sbjct: 68 IGVEGKKYADSSIY--YHKYKMYSLQNTYSKKELMTWKKRI----QKSISSS--FVCELK 119 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 DG I + Y+ G +A RGDG GE+V +R I +IP +++ N PE +E+RGE++ Sbjct: 120 YDGVSINLIYKNGFLTHAVTRGDGKKGEEVIENVRTIQSIPLKLIGENHPEYLEIRGEIF 179 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFA 251 + FL +N + G+ PYANPRN ASG L+ N ++ R L+ V+ + + F Sbjct: 180 LPIKKFLEINAKRTRSGKNPYANPRNTASGTLKIQNSKEVYKRTLSCIVYSVRGKNLPFD 239 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 QY+ LQ +R GF ++ V I + + + TLPY IDG+V KV+E Sbjct: 240 -TQYQALQTLRNWGFEISEKVLLCKKIKEIFHFLDYWSQWKQTLPYQIDGIVIKVNEHQN 298 Query: 312 QKQLGERARSPRWMISHKFAEKQAS-TRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q LG + PRW I++KF K+ S T+LL++ Q+GRTGI+TPVA + P I G ++ Sbjct: 299 QSLLGYTNKYPRWAIAYKFRPKKLSETKLLNLKFQVGRTGIITPVAEVIPKKISGTIVKR 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 TL+N +I+ + I GD +L+++ G++IPKV I + +R +A P F Sbjct: 359 VTLYNHHFIQKM-----------GIHYGDALLLEKGGDIIPKVAKINLKKRLINASPIYF 407 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP C+S +R N + C C +Q + +++HFVS A NI+G+G + Sbjct: 408 LTKCPSCRSH-LRKKN-------ESFYCPNNF-CPSQNMRKIQHFVSERAMNIKGIGNEM 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + ++ F I +D++ L+R K+ I G + +L +I K ++ Sbjct: 459 IKKLYQK---GFLYNI-SDLYQLKRE------KLLQIDGVKEKLADSLIKNIEKSKDNPS 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +R +++LGI HVG I++ L + +L+ IN++I D L + +G I++ Sbjct: 509 QRVLYALGIPHVGEYISKKLTEKFLN-------INSLIQ---ADEAQLTSISGIGKKISE 558 Query: 611 AIVEFYQNPRNICAVEALLKE---VSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKA 666 +I ++ N VE L+K S ++ KN S IE K +FTG L + R+KA Sbjct: 559 SIKTYFFTKENKKIVENLMKHGLNFSDFYKKNPVKNQYSPIEGKSFLFTGKLSSMTRNKA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQQ 720 + V LG V ++ + + I+VG N GSKLE+ + +KI+ E+ F+ LL+Q Sbjct: 619 KNLVELLGGRVFHTVNNQINFIVVGKNFGSKLERCMKKNHIKILTEDIFIKLLEQ 673 >gi|331270357|ref|YP_004396849.1| DNA ligase [Clostridium botulinum BKT015925] gi|329126907|gb|AEB76852.1| DNA ligase, NAD-dependent [Clostridium botulinum BKT015925] Length = 663 Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 221/712 (31%), Positives = 378/712 (53%), Gaps = 64/712 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L E++ YY P + D +YD ++ D + P Sbjct: 1 MEGKKQQIYKLVDELNKLAYEYYVLDNPSVADKDYD---KKYDELVQLEKQTGMML-PYS 56 Query: 74 PLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLR----KFITRIYRFWQKKDDN--SI 126 P ++G +M L+ F K TH SL K ++E+++ K I I + K +D I Sbjct: 57 PTQRVG-DMVLAKFEKYTHKGKLWSLGKAQSLEEVKDWHNKNIKAINEYNLKHEDKLPPI 115 Query: 127 FFTLEPKIDGTMITIRYE-KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + + K DG I Y+ +G V AA RG G GED++A + I T+P L +N +I Sbjct: 116 KYIVTKKFDGLTINCTYDNEGILVTAATRGTGEIGEDITAQAKTIKTLP--LKINNNALI 173 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLG 244 EV GE ++K F +E + + P N RN A+G LR LN + R L+ F + +G Sbjct: 174 EVHGEAIMTKEAF----EEYNKIAQVPLKNLRNGAAGALRNLNIKETARRNLSAFFYDVG 229 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + EML+ ++ G P+++ V+ +T I ++ IR+ L YDIDG+V Sbjct: 230 YNEGKPFETYSEMLKFIKEQGIPMDDYVKTCSTVEEIEEEIKYIEEIRNDLNYDIDGIVI 289 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 +D+ ++ +G + P+W +++KF ++A+T+L+D++ +GR+G +TP A LEPV IG Sbjct: 290 AIDDMKSRELIGYTVKFPKWALAYKFEAQEATTKLIDVEWNVGRSGRVTPTAILEPVEIG 349 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + ATL+N D I R G +++G V ++R+ +VIP+++ ++ N D Sbjct: 350 GVTVKRATLNNMDDIN---------RKG--VKLGSVVFLRRSNDVIPEIMGVVENSTE-D 397 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + P CP C S +V++ + C L+C Q ++ + HF SR+A NI Sbjct: 398 TKEIKTPEVCPYCGSEIVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAMNIA 449 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G ++ F+ D I+ +D++ +++ + + N+ FG+ NL D+I K Sbjct: 450 GFSEKTAGQLFEELD----IKSISDLYRIKKEE------LLNLQRFGEKKAQNLIDAIEK 499 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +N L FI++LGI +VG + + L K + + + N+ + DD LI V + Sbjct: 500 SKNCDLPSFIYALGIPNVGKKTSTDLCKKF-------KTLKNLKSATFDD---LISVEDI 549 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIEN-KKLVFTGTLQKIQ 662 GDI+A++I+EF+++ + +++ LL+ V+P E+ + I N K +V TG+L Sbjct: 550 GDIVAESIMEFFKDDTILKSIDELLELGVNPEF--QEEEIQENIFNGKTVVVTGSLNSFS 607 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R + +E + LGA VS+ +S+KTD +IVG +PGSK EKA +L VKI++E++F Sbjct: 608 RSEIKEKLQSLGAKVSSSVSKKTDYVIVGKDPGSKYEKAVELNVKIIDEDEF 659 >gi|150388772|ref|YP_001318821.1| NAD-dependent DNA ligase LigA [Alkaliphilus metalliredigens QYMF] gi|190359225|sp|A6TLU4|DNLJ_ALKMQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149948634|gb|ABR47162.1| DNA ligase, NAD-dependent [Alkaliphilus metalliredigens QYMF] Length = 660 Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 216/720 (30%), Positives = 364/720 (50%), Gaps = 84/720 (11%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73 KE+ L ++++ + YY +PI+ D EYD+L + L E+ G Sbjct: 5 KEMEQLVKQLNEYSYKYYVLDQPIVSDKEYDSL----------YDQLIELEEKTGHVLLD 54 Query: 74 -PLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++GGE L F+ + L SL+K E+L + RI + + + ++ I + +E Sbjct: 55 SPTQRVGGE-PLKKFQSHQHVALLWSLDKAKTAEELVAWEQRIKK--KLESNHEIEYIVE 111 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + + YE G+ V AA RG+G GE + ++ I IP L ++ +E++GE Sbjct: 112 YKFDGLTLNLTYENGELVQAATRGNGVVGESIIEQVKTIQAIP--LGVDFNNKMEIQGEG 169 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIF 250 ++ + N ++P NPRNAA+G LR L+P R L F + +G + Sbjct: 170 LMAISTLAQYNK----TAKEPLKNPRNAAAGALRNLDPKVTAKRKLGAFCYSIGYYEGME 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + +M+ ++ FPV+N ++ ++ E+++ L Y DG+V KV++ Sbjct: 226 FETHIQMIDFLKKNRFPVSNYIKSCKGIDQVIEQIREVEAGMKELDYLTDGIVIKVNDLR 285 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ LG + PRW I++KF ++ +T+L + Q+GRTG LTP A+LEPV I G ++ Sbjct: 286 TREILGYTQKFPRWAIAYKFEAQEVTTKLEAVLWQVGRTGKLTPAAQLEPVEIAGVTVSR 345 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+N + I+ + ++VG +V ++R+G+VIP+++ I E +A Sbjct: 346 ATLNNWEDIQ-----------RKKVKVGCQVWLRRSGDVIPEIMGAI-EETCEEAVEIEK 393 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHR-----CTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP C S +V HR C L+C Q + R+ H+ SRDA +IEG Sbjct: 394 PQHCPACDSEIV-------------HRGVHIFCPNSLSCKPQLVSRIVHYASRDAMDIEG 440 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 ++ + F+ A ++ A ++ L+ + FGD NL D+I + Sbjct: 441 FSEKTAEQLFE----ALGLKNIAALYELKYEDLIQLER------FGDKKAKNLLDAIEES 490 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 + L+ FI++LGI +VG + A LA Y+ ++ I N D+ L+ +P +G Sbjct: 491 KTCKLDAFIYALGIPNVGRKTAADLANYF-------GDLEKIQRANYDE---LVVLPDIG 540 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+AQ+IV F+++ + I ++E LL E + + S K +V TGTL+ R + Sbjct: 541 GIVAQSIVGFFEDEKIIKSIELLLAEGIKPQHKMKNRQESIFSGKTVVVTGTLENYGRKE 600 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL-------GVKIMNEEQFLFLL 718 Q + + GA VS +S+ TD +I GDN GSKL+KAQ++ ++I++E F LL Sbjct: 601 IQTLLEEQGAKVSGSISKNTDFVIAGDNAGSKLKKAQEILESGVETNLQILDEAAFEALL 660 >gi|297588239|ref|ZP_06946882.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516] gi|297573612|gb|EFH92333.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516] Length = 662 Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 208/712 (29%), Positives = 362/712 (50%), Gaps = 80/712 (11%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 K L + + +YH YY P+I DSEYD L + +L E PN Sbjct: 8 KYLVDILNKYAYH---YYTLDDPLIEDSEYDVL----------YDELVNLEKETGIVLPN 54 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SI 126 P N+IGGE+ K H SL K + E++R ++ + F + + N + Sbjct: 55 SPTNRIGGEVLSGFEKHVHLNTLYSLGKAQSKEEVRNWVNKTIEFVENYNKNHVNKLPQV 114 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 F +E K DG + + Y+ G V A RG+G GE +++ +R I +IP L + ++E Sbjct: 115 EFYVEFKFDGLTVNLTYDGGYLVMATTRGNGTIGEVITSQVRTINSIP--LKIKDTRLME 172 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNF--FVHGLG 244 ++GE + + N N RNAA+G LR L+P +TR N + + + Sbjct: 173 IQGEGVMPLSSLEKYN----QTHEPKLKNARNAAAGALRNLDPA-VTRERNLDAYFYNVN 227 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 E + Q +M++ + F + + A +F I + +E+ +R+ + DG+V Sbjct: 228 YLEENVLETQEQMMKFLGDNYFKLYPYEKHATSFEEISEFIDEIFELRNEIDVLTDGVVI 287 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++F +++LG + PRW I++KF ++ +T + +++ +GRTG +TP A LEPV IG Sbjct: 288 KVNDFKTREKLGYTNKFPRWAIAYKFEPERFTTIVKEVEWNVGRTGKVTPTALLEPVEIG 347 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 + ATL+N D I+ + +R+ V V+R+ +VIP+++ +VN D Sbjct: 348 NVTVKRATLNNIDDIE-----------RKQVRLNSEVFVRRSNDVIPEIMG-VVNPDQED 395 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNI 483 + P +CP C S + RD H C ++C+ Q ++R+ HF SR+A NI Sbjct: 396 TEEIEIPHYCPYCHSELFRD---------GVHIFCPNSMSCTPQLVKRMVHFASRNAMNI 446 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GL ++ L + +I +I+ +++ Q + + GF + NL ++I Sbjct: 447 DGLSEKTLKVLLEK----LNITSIEEIYDVKKEQ------LMQLEGFKEKKSQNLINAIE 496 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K +N+ L FIF+LGI +G + + LA+ Y S+ N + + LI++ Sbjct: 497 KSKNVDLANFIFALGIPEIGEKTSFELAQKYKSFDNLREA----------KFDELIQIED 546 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKIQ 662 +G++IA+ IVEF+ + ++++LL S I ++ +N+ +++N V TG+L Sbjct: 547 IGNVIAEEIVEFFHDETISHSIDSLL---SKGIKIKNPENIEKKLDNLTFVLTGSLVNYS 603 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R + + ++ LGA VS+ +S+ TD ++ G+ GSKL KA+ LGVK+M E++ Sbjct: 604 RKELTDKLSNLGAKVSSSVSKNTDYVVYGEKAGSKLTKAKDLGVKLMTEDEL 655 >gi|78777542|ref|YP_393857.1| NAD-dependent DNA ligase LigA [Sulfurimonas denitrificans DSM 1251] gi|123768611|sp|Q30QV9|DNLJ_SULDN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78498082|gb|ABB44622.1| DNA ligase (NAD+) [Sulfurimonas denitrificans DSM 1251] Length = 652 Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 218/701 (31%), Positives = 364/701 (51%), Gaps = 75/701 (10%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS--ED--PNGPLNKIGGEMNL 84 SYH YY I D YD L H + S ED N P ++G ++ Sbjct: 17 SYH---YYVLDDAITTDEVYDKL-------YHEVLEYEESHKEDILKNSPTQRVGDTVSE 66 Query: 85 SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144 K H SLE +++ + L+K++ + Y+ D++I F EPK DG + + YE Sbjct: 67 GFSKAPHLSRMWSLEDVFDSDGLQKWLIKTYKL-----DSNISFYCEPKYDGASLNLIYE 121 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204 G+ A RGDG GE ++ ++ I ++P LS+ E IE+RGEV I K++F +N Sbjct: 122 NGELSQAITRGDGEVGELITQNVKTIRSVP--LSIEHKEKIEIRGEVVIFKDEFEKINQT 179 Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR- 262 + G +ANPRNAA+G LR+L+ + +R L F +G+G E F + + + QKM Sbjct: 180 RLKDGEALFANPRNAAAGSLRQLDSSITASRNLVFLPYGVG---ENFLEHKL-LSQKMEY 235 Query: 263 --CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 LGF F+ I + Y EM R + P +DG+V KVDE + Q +G + Sbjct: 236 IYSLGFKKPPFCATCKDFNEIEAVYQEMSRNRDSYPMMLDGMVVKVDEIAAQIDMGYTVK 295 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PR+ +++KF + T + +I +Q+GRTG +TPVA +EP NI G ++ ATLHN D I+ Sbjct: 296 NPRFSVAYKFPAVEKITTIKEIILQVGRTGAVTPVAIVEPTNIDGVVVERATLHNFDEIQ 355 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 +DIR+ D V++ R+G+VIPK++ ++ +ER + P+ CP+C+S Sbjct: 356 -----------RKDIRINDHVIILRSGDVIPKIIKVLTHERDGSEVEYKRPTICPVCESE 404 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 ++ + G L+ +C L C A+ + + +F S+ NI+GLG + ++ F S Sbjct: 405 LLDE-----GVLL---KCQ-NLTCEARVINSIIYFASKPCLNIDGLGVKIVEALFNSG-- 453 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 ++ D+F L + + GF + NL D++ + RF+ SLGI Sbjct: 454 --LVKSVVDLFDLTLEKLLTLE------GFKEKKAQNLLDALGSAKGCEYWRFVNSLGIE 505 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ-NP 619 H+G +++L+ + S I D+ ++ VG+ +A++++EF + N Sbjct: 506 HIGEVASKTLSAKFGS---------GFIDATKDE---IVACDGVGEEMAESLLEFIRVNR 553 Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 I ++ +LK + P + R E + + K +V TG++ + R +E + LGA V + Sbjct: 554 ETILKLQNILKPLEP-LQRQEAK-ENPFKGKSVVLTGSMSE-SRDMIKEMLESLGAKVVS 610 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +S+KTD +I G++ GSK +KA LGV+ +NE++ ++Q Sbjct: 611 SVSKKTDFVIYGEDAGSKYDKAMDLGVECLNEDEMRSKIEQ 651 >gi|302874256|ref|YP_003842889.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B] gi|307689480|ref|ZP_07631926.1| NAD-dependent DNA ligase LigA [Clostridium cellulovorans 743B] gi|302577113|gb|ADL51125.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B] Length = 665 Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 212/723 (29%), Positives = 370/723 (51%), Gaps = 74/723 (10%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + I ++K + L ++++ YY P I D EYD L + +L E Sbjct: 1 MEISDSKKRIEELIEQLNKFAYEYYALDNPSISDKEYDKL----------YDELTILEKE 50 Query: 72 NG------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDN 124 G P ++G + K H SL+K + E++ ++ R + Q +N Sbjct: 51 TGYILSYSPTQRVGDGILSQFSKYIHKGRLWSLDKAQSFEEIIEWHNRNVKAVMQYNKEN 110 Query: 125 S-----IFFTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + + + + K DG + Y+ G + AA RG G GED++A + I +P L Sbjct: 111 ADKLPPLEYVITKKFDGLTLNCTYDNDGIMIKAATRGTGEIGEDITAQAKTIKALP--LK 168 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237 ++ + E+ GE ++K F A N++ N RN A+G LR LN + R L+ Sbjct: 169 VDHKGLFEIHGEAIMTKEAFDAYNEK----AEVKLKNLRNGAAGALRNLNLKETAKRNLS 224 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F + +G + +M++ +R FP+++ ++ A I + + SIR+ L Y Sbjct: 225 AFFYDVGYNEGDPFESYIDMMKFIREKNFPIDDYMKIARDTEDIKNEIEYINSIRADLNY 284 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+V +++ + LG + P+W I++KF ++ +T LLD++ +GR+G ++P A Sbjct: 285 DIDGIVIVINDMRTRAVLGYTIKFPKWAIAYKFEAEETTTELLDVEWNVGRSGRVSPTAL 344 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV++GG + ATL+N D IK +++++G+RV V+R+ +VIP+++ Sbjct: 345 LEPVDLGGVTVKRATLNNMDDIK-----------RKNVKIGNRVFVRRSNDVIPEIMG-- 391 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFV 476 V E +A+ PS CP C S ++ LV AH C L+C Q ++ + HF Sbjct: 392 VAEELENAREIIAPSNCPSCGSELM---------LVGAHYFCENTLSCKPQMVKSIVHFG 442 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR+A NIEG ++ + ++ D ++ +D++ L++ + + N+ FGD Sbjct: 443 SREAMNIEGFSEKTAEQLYEKVD----LKTLSDLYKLKKEE------LLNLEKFGDKKAQ 492 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL D+I K + L FI++LGI +VG + A+ L K S + + + Sbjct: 493 NLLDAIEKSKECELASFIYALGIPNVGKKTAKDLCKNLKSLEGIKKAT----------YE 542 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFT 655 L+ + +G+I+A+ I+EF+ + + + +++ LL VSPS N S +K +V T Sbjct: 543 DLLAIEDIGEIVAKCIIEFFSDEKILRSIDELLAVGVSPSYEETLVNDQSSFMDKTVVVT 602 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL+ R + ++ + LGA VS +S+KTD +I G+ GSK +KA LG+KI++EE+FL Sbjct: 603 GTLKNFSRTEIKDKLEALGAKVSGTVSKKTDYVIAGEAAGSKYDKAISLGIKILSEEEFL 662 Query: 716 FLL 718 ++ Sbjct: 663 AMI 665 >gi|4235380|gb|AAD13193.1| NAD-dependent DNA ligase [Thermus sp. Vil3] Length = 505 Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 184/509 (36%), Positives = 284/509 (55%), Gaps = 38/509 (7%) Query: 70 DPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P ++G + + F+ + H SL+ + +E++R F RI R +K + Sbjct: 2 SPDSPTEQVGAKPLEATFRPIRHPTRMYSLDNAFTLEEVRTFEERIERALGRK--GPFVY 59 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T+E K+DG + + YE+G V+ A RGDG +GE+V+ + IPTIPR L +PE +EVR Sbjct: 60 TVEHKVDGLSVNLYYEEGILVWGATRGDGETGEEVTQNLLTIPTIPRRLK-GVPERLEVR 118 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGK 245 GEVY+ FL LN+E+ G K + NPRNAA+G R+ +P R F+ GLG Sbjct: 119 GEVYMPIEAFLRLNEELEEKGEKIFKNPRNAAAGSFRQKDPRITARRGLRATFYALGLG- 177 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 E K Q ++L +R GFPV +G +A G+ Y R +LP++ DG+V K Sbjct: 178 LEESGLKTQLDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVK 237 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +DE SL ++LG AR+PR+ I++KF ++ T L + +Q+GRTG +TPV LEPV I G Sbjct: 238 LDELSLWRELGYTARAPRFAIAYKFPAEEKETALFQVVLQVGRTGQVTPVGILEPVFIEG 297 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + ++ TLHNE YI+ L D+R+G+ VLV AG VIP+V+ ++ +R + Sbjct: 298 SEVSRVTLHNESYIEDL-----------DVRIGEWVLVHNAGGVIPEVLRVLKEKRTGEE 346 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 +P +P CP C R+V K GK+ HRC L C A++ E ++H+ SR A +I G Sbjct: 347 RPIRWPETCPECGHRLV-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIGG 397 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++ ++ + + D+ L R ++ +E + G S NL I K Sbjct: 398 LGEKLIEKLLEKG-------LVKDVADLYRLKEEDLVGLERM---GKKSAQNLLRQIEKS 447 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYY 574 + LER +++LG+ VG +AR+LA ++ Sbjct: 448 KARGLERLLYALGLPGVGEVLARNLAAHF 476 >gi|295135415|ref|YP_003586091.1| DNA ligase [Zunongwangia profunda SM-A87] gi|294983430|gb|ADF53895.1| DNA ligase [Zunongwangia profunda SM-A87] Length = 812 Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 168/474 (35%), Positives = 263/474 (55%), Gaps = 26/474 (5%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 +L +E+ +H+ YY P I D ++D + + P+ DPN P ++GG + Sbjct: 9 TLREELQHHNYQYYVLDNPEISDYDFDMKLKELQELEEKHPEF---NDPNSPTQRVGGAV 65 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 + V H SL ++ E+L+ + TRI +K D I +T E K DG +++ Sbjct: 66 TKNFTTVVHDYRMYSLSNSYSKEELQDWETRI----RKLVDGDIKYTCELKYDGASMSLM 121 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 Y+KG+ V A RGDG G+DV+ ++ I ++P L + PE +RGE+ + F LN Sbjct: 122 YDKGQLVQAVTRGDGFQGDDVTNNVKTIRSVPLKLRGDYPEKFHIRGEIVLPFEGFAKLN 181 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 E + G +PYANPRN ASG L+ + ++ R L+ ++ + + + Q+E L+K Sbjct: 182 AERVENGEEPYANPRNTASGSLKLQDSAEVAKRPLDCLLYNIAGEN-LPISSQFESLEKA 240 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 R GF V N ++SY N R LPY+ DG+V KV++F Q++LG A+S Sbjct: 241 RDWGFKVPAESELKNNIEEVLSYINYWDIHRHDLPYETDGVVVKVNDFGQQEELGYTAKS 300 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW +++KF +Q +T+L I Q+GRTG +TPVA LEPV + G ++ A+LHN D I Sbjct: 301 PRWAMAYKFKAEQETTKLHKITYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIAK 360 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 L DIR GD+V V++ GE+IPK+V + +R PD++P ++ +CP C + + Sbjct: 361 L-----------DIREGDKVFVEKGGEIIPKIVGVDFKQRDPDSEPTTYAIYCPECGTEL 409 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 R K G+ A H C + C Q + R++HFVSR A +I+GLGK ++ + Sbjct: 410 QR----KEGE--AQHFCPNYVGCPPQIIGRMEHFVSRKAMDIDGLGKGTIEILY 457 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 109/188 (57%), Gaps = 14/188 (7%) Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 + N+ +S+ + + + ++ +F+LGIR VG AR +A+++ + I+ ++A N + Sbjct: 637 TTENILNSVEESKKRTFDKVLFALGIRDVGEVSARKIAEHFGN-------IDKLMAANTE 689 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKL 652 + LI++ VG+ +A +I+EF+ + NI V+ L+E EK SS ++E Sbjct: 690 E---LIQLRDVGERVAASIIEFFTDEENIDIVKR-LREKDLQFEMEEKETSSNKLEGLSF 745 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711 V +GT I R + ++++ + G + LS+ T+ +IVG+ G SK KA++ G+ +++E Sbjct: 746 VVSGTFS-ISRSELKKHIEENGGKNLSSLSKSTNYLIVGEKMGPSKKVKAEKEGIAMISE 804 Query: 712 EQFLFLLQ 719 E+F +++ Sbjct: 805 EEFFKMIE 812 >gi|313681943|ref|YP_004059681.1| DNA ligase, nad-dependent [Sulfuricurvum kujiense DSM 16994] gi|313154803|gb|ADR33481.1| DNA ligase, NAD-dependent [Sulfuricurvum kujiense DSM 16994] Length = 676 Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 219/690 (31%), Positives = 353/690 (51%), Gaps = 66/690 (9%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 SYH YY PI D EYD L + A H P S+ P ++G K Sbjct: 17 SYH---YYVLDDPITTDEEYDILYHKVVAYEHEHPSEIISDSPT---QRVGDVPQDKFDK 70 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 H SLE +++ E+L ++ RI + + + F EPK DG + + Y+KG Sbjct: 71 AQHLSRMWSLEDLFDREELETWVNRITKGY-----GDVRFYCEPKFDGASLNLIYDKGVL 125 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 V A RGDG GEDV+ + I +IP L + IE+RGEV I K DF +N E Sbjct: 126 VQAITRGDGVEGEDVTQNAKTIQSIP--LRIEYKGRIEIRGEVVIFKEDFEKINLERSRN 183 Query: 209 GRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG-KTSEIFAKGQYEMLQKMRCLG 265 G +ANPRNAA+G LR+L+ T IT R L F +G+G T EI K E ++ + LG Sbjct: 184 GESLFANPRNAAAGSLRQLD-TRITASRRLVFMPYGIGANTLEI--KNLSERMEWVYGLG 240 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + + I ++Y+EM+ R +DG+V KVD ++Q +LG ++PRW Sbjct: 241 FRNPHMTHLCESADQIETFYHEMRVERDNFAMLLDGMVIKVDSIAVQDELGYTVKNPRWA 300 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T L ++ +Q+GR+G++TPVA +EPV+I G + +TLHN D I+ Sbjct: 301 AAYKFPAIEKLTTLKEVIMQVGRSGVVTPVAIVEPVDIEGVTVERSTLHNFDEIE----- 355 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +DIR+GD+V++ R+G+VIPK+V +I ER Q P+ CP+C S ++ + Sbjct: 356 ------RKDIRIGDKVIILRSGDVIPKIVKVITAERTGSEQVIPRPTQCPVCGSELLDE- 408 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 G L+ +C + C A+ + + +F S+ NI+GLG D ++ A + Sbjct: 409 ----GALI---KCQ-NMGCEARVVNSIIYFASKQCLNIDGLG----DKIVEALHSAGMVH 456 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 +D+F L Q S + GF + NL D+I + RFI +LGI H+G Sbjct: 457 EVSDLFGLTMDQLLS------LEGFKEKKSRNLLDAIAAAKGCDCWRFINALGIEHIGEV 510 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ-NPRNICA 624 +++L + + A + ++ + G + ++I+EF + N I Sbjct: 511 ASKTLCGAFGT------------AFDRSSREEILALEGFGGEMVESILEFVRVNSEKIER 558 Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 + ++L +P +N + K +V TG++ + R + + +LGA V++ +S+K Sbjct: 559 LRSILNPAAPVKIEAAEN---PFKGKSVVITGSMS-VPRDHIKVMLEELGAKVASSVSKK 614 Query: 685 TDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TD ++ G++ G+K +KA +LGV ++ E +F Sbjct: 615 TDYVVYGEDAGNKYDKAVELGVTLLTESEF 644 >gi|187932891|ref|YP_001884644.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B str. Eklund 17B] gi|254781292|sp|B2TIZ7|DNLJ_CLOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|187721044|gb|ACD22265.1| DNA ligase, NAD-dependent [Clostridium botulinum B str. Eklund 17B] Length = 667 Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 220/712 (30%), Positives = 358/712 (50%), Gaps = 69/712 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPII----LDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 KEL + + SY YY P + D EYD LK P P Sbjct: 9 KELVEILNKYSYD---YYVLDNPSVSDKDYDKEYDELKLLEKETGFVLP--------YSP 57 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF-----WQKKDDNSIFFT 129 +IG + K TH SL+K ++++++ + R +F Q +D + + Sbjct: 58 TLRIGDVVLQGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNIKFVNEMRAQGEDLPDLKYI 117 Query: 130 LEPKIDGTMITIRYEKGKFV-YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 K DG + + Y KG + +A RG+G GE+V++ ++ I +IP L N ++ EV Sbjct: 118 ATKKFDGLTVNLTYNKGGMLEVSATRGNGEIGENVTSQVKTIKSIPLKLQEN-DDLFEVH 176 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247 GE +++ F N A P N RN A+G LR LN + R L+ F + +G Sbjct: 177 GEAIMTQEAFEKYN----ASADIPLKNLRNGAAGALRNLNIKETARRDLSAFFYDVGYKE 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 K EM+ ++ G P++ ++ + I ++ IR L YDIDGLV +D Sbjct: 233 GYQFKTYLEMMDFIKEKGLPIDEYLKVCTSIDDIKKEIEYIEKIRFDLNYDIDGLVIAID 292 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ LG + P+W I++KF ++A+T+LLD++ +GR+G + P A LEPV + G Sbjct: 293 DIRTRELLGYTVKYPKWAIAYKFEAQEATTKLLDVEWNVGRSGRIGPTAILEPVELAGVT 352 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATL+N D IK R G +R+G V V+R+ +VIP+++ + N +++ Sbjct: 353 VKRATLNNMDDIK---------RKG--VRIGADVFVRRSNDVIPEIMGTLENTLE-NSEE 400 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP C S VV L AH C L+C Q ++ + H+ SRDA NI G Sbjct: 401 ICPPTECPACGSHVV---------LNGAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGF 451 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ + F+ +I+ +D++ L++ + N+ FG+ NL ++I K + Sbjct: 452 SEKTAEQLFEK----LNIKSISDLYKLKKED------LINLEKFGEKKSENLLNAIEKSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + L FI++LGI +VG + A+ + + S I N + L+ V VGD Sbjct: 502 DCKLYSFIYALGIPNVGVKTAKDIVNKFKS----------IDGLKNATFEELVSVQDVGD 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I+AQ ++EF++ + I ++ LL I K V S ++K +V TGTLQ R + Sbjct: 552 IVAQDVIEFFKEEKVINTIDELLNLGVNPIFDEVKIVESIFKDKTVVTTGTLQNYSRTEI 611 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA VS +S+KTD +I G++ GSKL KA++LGVKI++EE+F +L Sbjct: 612 KTKLESLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVKIISEEEFEKML 663 >gi|12045108|ref|NP_072919.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37] gi|1352291|sp|P47496|DNLJ_MYCGE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|3844852|gb|AAC71474.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37] gi|166078824|gb|ABY79442.1| DNA ligase, NAD-dependent [synthetic Mycoplasma genitalium JCVI-1.0] Length = 659 Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 213/702 (30%), Positives = 364/702 (51%), Gaps = 64/702 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++L +L + YH YY S+P+I D EYD L + + PDL + + P ++ Sbjct: 9 QQLVNLIKNYDYH---YYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQID---SPTQRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE K+ H+ P LSLE ++ +++ FI I +Q N F +EPKIDG Sbjct: 63 GGEAVKGFKKLNHNSPMLSLENAFSTKEIANFIDNIN--FQTNSKNE--FVVEPKIDGVS 118 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ Y+ G V+A RGDG GEDV ++ I +IP L++ + IE+RGE+++ K F Sbjct: 119 ISLTYKNGVLVHALTRGDGSVGEDVLNNVKTIKSIP--LTIPFTKTIEIRGEIFVDKKTF 176 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYE 256 LA+N+++ KP+AN RN A+G +R LN ++IT R L + + E Q Sbjct: 177 LAINNQL----EKPFANARNLAAGTIRNLN-SEITAQRKLRALFYYIPNGLEESITTQTM 231 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L++++ FPV++ +R +++Y R L +++DGLV K++ +QLG Sbjct: 232 VLEQLKQWKFPVSDTIRVFQNKFQLINYLEAFDKKREQLTFNLDGLVIKLNSLLFYQQLG 291 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW I+ KF+ K T+L + I IGRTG + A+LE VN+ G +T ATLHN Sbjct: 292 ATSKSPRWAIAFKFSPKFVQTKLTAVLITIGRTGRVNYTAKLESVNLDGTKVTAATLHNF 351 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYIK +DIR+ D V++ +AGE+IPKV+ + + +R D +CP Sbjct: 352 DYIK-----------TKDIRINDTVVIYKAGEIIPKVLKVNLEKRKNDTIIIQEQKYCPS 400 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S++V+ ++ CT C + ++ + +FVS+ A +I GL + ++ Sbjct: 401 CNSKLVKIVDE------VDQYCTNE-TCKERNIQLINYFVSKTAMDINGLNINTITKLYE 453 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +R D++ L+ ++ K++ L GD L D+I + + R + Sbjct: 454 HN----LVRSIVDLYDLKDKKN-QVLKLD--LKIGDKLFNKLVDNIENSKQKGMARLLTG 506 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI+HVG +A++LA ++ NI A + +LI + VG +A+++ ++ Sbjct: 507 LGIKHVGNVLAKNLANHF----------KNIKALQHASLENLISLNDVGITVAESLYNWF 556 Query: 617 QNPRNICAVEAL-LKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +P ++ +E L L++V P E N S K+ + TG+ I R + ++ ++ Sbjct: 557 HDPNHLQLIEQLELRQVKTDQLPLKINFETN--SIYFQKRFLITGSFN-ISRDQIKDLLS 613 Query: 672 -QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711 + ++ + D +I G+ P K+ A++L + I+NE Sbjct: 614 AKFDCQFASEVKPTVDFVIAGNKPTLRKINHAKELNIPIINE 655 >gi|255660255|ref|ZP_05405664.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37] Length = 658 Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 213/702 (30%), Positives = 364/702 (51%), Gaps = 64/702 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++L +L + YH YY S+P+I D EYD L + + PDL + + P ++ Sbjct: 8 QQLVNLIKNYDYH---YYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQID---SPTQRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GGE K+ H+ P LSLE ++ +++ FI I +Q N F +EPKIDG Sbjct: 62 GGEAVKGFKKLNHNSPMLSLENAFSTKEIANFIDNIN--FQTNSKNE--FVVEPKIDGVS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ Y+ G V+A RGDG GEDV ++ I +IP L++ + IE+RGE+++ K F Sbjct: 118 ISLTYKNGVLVHALTRGDGSVGEDVLNNVKTIKSIP--LTIPFTKTIEIRGEIFVDKKTF 175 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYE 256 LA+N+++ KP+AN RN A+G +R LN ++IT R L + + E Q Sbjct: 176 LAINNQL----EKPFANARNLAAGTIRNLN-SEITAQRKLRALFYYIPNGLEESITTQTM 230 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 +L++++ FPV++ +R +++Y R L +++DGLV K++ +QLG Sbjct: 231 VLEQLKQWKFPVSDTIRVFQNKFQLINYLEAFDKKREQLTFNLDGLVIKLNSLLFYQQLG 290 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 ++SPRW I+ KF+ K T+L + I IGRTG + A+LE VN+ G +T ATLHN Sbjct: 291 ATSKSPRWAIAFKFSPKFVQTKLTAVLITIGRTGRVNYTAKLESVNLDGTKVTAATLHNF 350 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 DYIK +DIR+ D V++ +AGE+IPKV+ + + +R D +CP Sbjct: 351 DYIK-----------TKDIRINDTVVIYKAGEIIPKVLKVNLEKRKNDTIIIQEQKYCPS 399 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S++V+ ++ CT C + ++ + +FVS+ A +I GL + ++ Sbjct: 400 CNSKLVKIVDE------VDQYCTNE-TCKERNIQLINYFVSKTAMDINGLNINTITKLYE 452 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 +R D++ L+ ++ K++ L GD L D+I + + R + Sbjct: 453 HN----LVRSIVDLYDLKDKKN-QVLKLD--LKIGDKLFNKLVDNIENSKQKGMARLLTG 505 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI+HVG +A++LA ++ NI A + +LI + VG +A+++ ++ Sbjct: 506 LGIKHVGNVLAKNLANHF----------KNIKALQHASLENLISLNDVGITVAESLYNWF 555 Query: 617 QNPRNICAVEAL-LKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +P ++ +E L L++V P E N S K+ + TG+ I R + ++ ++ Sbjct: 556 HDPNHLQLIEQLELRQVKTDQLPLKINFETN--SIYFQKRFLITGSFN-ISRDQIKDLLS 612 Query: 672 -QLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711 + ++ + D +I G+ P K+ A++L + I+NE Sbjct: 613 AKFDCQFASEVKPTVDFVIAGNKPTLRKINHAKELNIPIINE 654 >gi|111115379|ref|YP_709997.1| DNA ligase [Borrelia afzelii PKo] gi|123145685|sp|Q0SMV7|DNLJ_BORAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110890653|gb|ABH01821.1| DNA ligase [Borrelia afzelii PKo] Length = 660 Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 213/707 (30%), Positives = 365/707 (51%), Gaps = 67/707 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I D YY S P + D YD R + P+ + P Sbjct: 4 KIQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKCPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ +V HS+P LSL+K++N++ L+ +I +I NS ++EPKID Sbjct: 62 -KFGSDLLNDFKEVEHSVPVLSLDKVYNLDLLKSWIDKI------DFSNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ IR I +P L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHVPLFLGEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +FL +N + KPY N RN ASGILRR++ ++ + LN F++ F K Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLDF-KTN 227 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++K++ LGF VN +R Q ++ +++Y ++ R++ Y+IDG+V KV +F+L Sbjct: 228 NLAIEKLKKLGFKVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG P+W +++KF +++ I +Q+GR+G +TPVA ++ V + GA ITNA Sbjct: 288 REKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAFITNA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI + ++ VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYITSI-----------NLNVGDIVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ VV++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DKCPSCKTVVVKE---------GAHFFCTNNNCPSVAVERIKYFCSKNCMDIEGFSDKTI 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T + K+ GF D + NL +SI + Sbjct: 445 SFLFEKK----FISSEIDLYTF------NFYKLLKFKGFKDRKINNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G R L +L+ N ++ + + +L+L+++ +G+ IA Sbjct: 495 KLLLSIGIKELGENTIRLL---FLNNLNSFSKLFRLCQDRDFAFLTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLV-----FTGTLQKIQRHK 665 I++ + N I +V ++G + E+ + + ENK LV TG+ R Sbjct: 552 IIDAFNNSIMINKF-----KVFENLGFKMEERILIDDENKLLVGKKFCITGSFNGYSRPI 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 + + GA+ +++ D ++VG+ G+KL+KA L VKIM+ E Sbjct: 607 VIDKLENKGAIFKTCVTKGLDFLVVGEKAGTKLKKALNLNVKIMSFE 653 >gi|148377548|ref|YP_001256424.1| DNA ligase [Mycoplasma agalactiae PG2] gi|254781374|sp|A5IY71|DNLJ_MYCAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148291594|emb|CAL58980.1| DNA ligase [Mycoplasma agalactiae PG2] Length = 654 Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 228/707 (32%), Positives = 370/707 (52%), Gaps = 57/707 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+A++ + SL ++I+ + YYQ +KP + D EYD + + PDL S N P Sbjct: 4 EEAKELIKSLVEKINQWNYEYYQLNKPSVSDLEYDKALLELEKLEKEHPDLILS---NSP 60 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +IG + K + P LSL K +N +D+ FI I + ++ N F +EPKI Sbjct: 61 TFRIGSFASEKFTKFVYQKPMLSLAKAYNYDDINSFINNISKIVPTENIN---FNIEPKI 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I +RY++GK V AA RGDG GEDV+ I I +IP+++ N +EVRGEV+I+ Sbjct: 118 DGLSIALRYKQGKLVKAATRGDGSEGEDVTENIYQIKSIPKLI--NYFNDLEVRGEVFIT 175 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 KNDF +N+ RNAASG LR+L+ + R L+ F++ + + + Sbjct: 176 KNDFKKINESNNFANA------RNAASGTLRQLDANIVAERNLSAFLYEIVEPEKHGIYY 229 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q+E L+ M+ L FP N + + ++ I++ L YD DGLV K+++ + Sbjct: 230 QHEALEFMKNLDFPTN-PFSKVVEIEELEESISDFAEIKNKLDYDADGLVIKLNDLQMWD 288 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG+ ++ P+ I+ K+ + AS+R+ DI +GRTG +T +A + PV + + ATL Sbjct: 289 KLGKTSKFPKHSIAFKYDVEVASSRITDILTSVGRTGKITYIANILPVLLNQTTVKAATL 348 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN ++IK + +I + D V + +AGE+IPKV+ + + + D + + Sbjct: 349 HNHNFIKDM-----------NININDEVNIIKAGEIIPKVISLKEEKNYVDY--YKKATN 395 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C S++V + + CT C + + + HF SR+ NI GLG + Sbjct: 396 CPSCGSQLVE------FEGIVDQFCTND-ECPDKNINNIYHFASRNCLNIVGLGLSTVKD 448 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F+ P F I+ DIF L + + ++ + + D+ V N+ +SI +N + Sbjct: 449 FY----PKF-IKNIKDIFDLHKYR----AELIKLPRYRDLKVDNILNSIESAKNKKFSKV 499 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGI+H+G A+ +A +Y NFA+ +++ HN L L +G I ++++ Sbjct: 500 IFALGIKHIGQRAAKLIAD---NYANFAELLDD---HN---LLKLQNTKNIGPKIIESLI 550 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 EF +P N + A L + G+ K +S+ + V TG L + + H + Sbjct: 551 EFISSPAN-QDLLAFLDAIFNYEGK-AKVISTILSGYTFVITGVLSEPRSHFVKLIEEHS 608 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G V SAI S KT ++ G + GSKLEKA + G K++NEEQF L++Q Sbjct: 609 GNVSSAI-SSKTSYLLAGSDAGSKLEKAYKTGTKVINEEQFYDLIKQ 654 >gi|216263494|ref|ZP_03435489.1| DNA ligase, NAD-dependent [Borrelia afzelii ACA-1] gi|215980338|gb|EEC21159.1| DNA ligase, NAD-dependent [Borrelia afzelii ACA-1] Length = 660 Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 212/707 (29%), Positives = 366/707 (51%), Gaps = 67/707 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I + YY S P + D YD R + +P+ + P Sbjct: 4 KIQQEIADLKKLIRKWNKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ +V HS+P LSL+K++N++ L+ +I +I NS ++EPKID Sbjct: 62 -KFGSDLLNDFKEVEHSVPVLSLDKVYNLDLLKLWIDKI------DFSNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ IR I +P L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHVPLFLGEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +FL +N + KPY N RN ASGILRR++ ++ + LN F++ F K Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLDF-KTN 227 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++K++ LGF VN +R Q ++ +++Y ++ R++ Y+IDG+V KV +F+L Sbjct: 228 NLAIEKLKKLGFKVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG P+W +++KF +++ I +Q+GR+G +TPVA ++ V + GA ITNA Sbjct: 288 REKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAFITNA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI + ++ VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYIASI-----------NLNVGDIVKVSRRGDVIP-AVEMVINKFSTGF--FKIP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ VV++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DKCPSCKTVVVKE---------GAHFFCTNNNCPSVAVERIKYFCSKNCMDIEGFSDKTI 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T + K+ GF D + NL +SI + Sbjct: 445 SFLFEKK----FISSEIDLYTF------NFYKLLKFKGFKDRKINNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G R L +L+ N ++ + + +L+L+++ +G+ IA Sbjct: 495 KLLLSIGIKELGENTIRLL---FLNNLNSFSKLFRLCQDRDFAFLTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLV-----FTGTLQKIQRHK 665 I++ + N I +V ++G + E+ + + ENK LV TG+ R Sbjct: 552 IIDAFNNSIMINKF-----KVFENLGFKMEERILIDDENKLLVGKKFCITGSFNGYSRPI 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 + + GA+ +++ D ++VG+ G+KL+KA L VKIM+ E Sbjct: 607 VIDKLENKGAIFKTCVTKGLDFLVVGEKAGTKLKKALNLNVKIMSFE 653 >gi|157164612|ref|YP_001467146.1| NAD-dependent DNA ligase LigA [Campylobacter concisus 13826] gi|190359238|sp|A7ZED8|DNLJ_CAMC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|112801346|gb|EAT98690.1| DNA ligase, NAD-dependent [Campylobacter concisus 13826] Length = 647 Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 219/689 (31%), Positives = 355/689 (51%), Gaps = 75/689 (10%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHS 92 YY +P+ D EYDAL A A P SE P ++GG + K +H Sbjct: 19 AYYDEDEPLASDEEYDALYHAVLAFEQANP----SEISLFSPTKRVGGGVKEGFSKASH- 73 Query: 93 IPTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 ++++W++ED+ F W K+ + ++ F EPK DG + + YE G V A Sbjct: 74 -----IKRMWSMEDI--FSLGELDAWLKRGEKENLTFVAEPKFDGASLNLLYENGVLVRA 126 Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211 RGDG +GEDV+ R I ++P+ S++ +IE+RGEV I K+DF LN E G Sbjct: 127 ITRGDGVTGEDVTQNARTISSVPK--SISYKGLIEIRGEVVIRKDDFELLNMERAKEGEA 184 Query: 212 PYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270 P +NPRNAA+G LR+L+ R L F G+G+ S + K E+++ +R LGF ++ Sbjct: 185 PLSNPRNAAAGSLRQLDSAVTAKRKLLFIPWGVGEQS-LGLKDHSEVMKFVRDLGFERDD 243 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 + + + YNE+ + R + +DG+V +V++ + +QLG + P++M++ KF Sbjct: 244 FFKILKKDE-LEAAYNELLANRDSKSVMMDGMVIRVNDLARCEQLGYTVKFPKFMVAFKF 302 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 + TRL D+ +Q+GR+G++TPV L+ VNI GA + +ATLHN D I+ L VM+ Sbjct: 303 PAIEKVTRLKDVALQVGRSGVVTPVGVLDEVNIDGANVKSATLHNFDEIERLG----VMK 358 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 D + + R+G+VIPK+ + + R Q P FCP+C S ++ + G Sbjct: 359 -------NDYIGIIRSGDVIPKITKVFKDRRDGSEQAIERPKFCPVCGSHLLDE-----G 406 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 V +C L+C A+ + + H+ S+ NI+GLG ++ F D I DI Sbjct: 407 VFV---KCQ-NLSCRARVVGSIIHYASKKCLNIDGLGDAIVNLLF---DKGL-IACIKDI 458 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 + L+ S + GF + V NL ++I + L RFI LG H+G A+ L Sbjct: 459 YGLKFDDLMS------LEGFKEKKVNNLLNAIEASKGAELSRFITGLGCEHIGEVAAKKL 512 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWL-----SLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A + DWL L + G +A ++++F + R+ + Sbjct: 513 ASSF-----------------GLDWLDASFEELTALEGFGVEMANSLIDFAEVNRD--EI 553 Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 AL + V PS+ +++S+ + K +V TGTL + R + + + GA VS +S+KT Sbjct: 554 LALSQIVQPSV-TQVQSISNALSGKTVVITGTLSR-PRDEIKAELESFGAKVSGSVSKKT 611 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 D ++ G+ GSKL+KA +LGV +++E ++ Sbjct: 612 DFVLAGEEAGSKLDKANELGVLVIDESEY 640 >gi|4235372|gb|AAD13189.1| NAD-dependent DNA ligase [Thermus aquaticus] Length = 527 Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 187/553 (33%), Positives = 306/553 (55%), Gaps = 48/553 (8%) Query: 71 PNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++G S F+ V H SL+ ++++++R F RI R +K +T Sbjct: 6 PDSPTEQVGARPLESTFRPVRHPTRMYSLDNAFSLDEVRAFEERIERALGRK--GPFLYT 63 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +E K+DG + + YE+G V+ A RGDG +GE+V+ + I TIPR L+ +P+ +EVRG Sbjct: 64 VEHKVDGLSVNLYYEEGILVFGATRGDGETGEEVTQNLLTIRTIPRRLT-GVPDRLEVRG 122 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKT 246 EVY+ FL LN E+ G + + NPRNAA+G LR+ +P R F+ GLG Sbjct: 123 EVYMPIEAFLRLNQELEEAGERIFKNPRNAAAGSLRQKDPRVTARRGLRATFYALGLG-L 181 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E K Q+++L ++ GFPV +G +A G+ Y R LP++ DG+V K+ Sbjct: 182 EETGLKSQHDLLLWLKERGFPVEHGFTRALGAEGVEEVYQAWLKERRKLPFEADGVVVKL 241 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +L ++LG AR+PR+ +++KF ++ TRLL + Q+GRTG +TPV LEPV I G+ Sbjct: 242 DDLALWRELGYTARAPRFALAYKFPAEEKETRLLSVAFQVGRTGRITPVGVLEPVFIEGS 301 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ TLHNE +I+ L D+R+GD VLV +AG VIP+V+ ++ R + + Sbjct: 302 EVSRVTLHNESFIEEL-----------DVRIGDWVLVHKAGGVIPEVLRVLKERRTGEEK 350 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P +P CP C ++ K GK+ HRC L C A++ E ++H+ SR A +I+GL Sbjct: 351 PILWPENCPECGHALL-----KEGKV---HRCPNPL-CPAKRFEAIRHYASRKAMDIQGL 401 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ ++ + +R AD++ L++ ++ G+ S NL I + + Sbjct: 402 GEKLIEKLLEK----GLVRDVADLYRLRKEDLLDLERM------GEKSAENLLRQIEESK 451 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 LER +++LG+ VG +AR+LA + ++ ++ D L+ V VG+ Sbjct: 452 GRGLERLLYALGLPGVGEVLARNLALRF-------GHMDRLLEAGLGD---LLEVEGVGE 501 Query: 607 IIAQAIVEFYQNP 619 + A+AI+ ++P Sbjct: 502 LTARAILNTLKDP 514 >gi|188587790|ref|YP_001919828.1| NAD-dependent DNA ligase LigA [Clostridium botulinum E3 str. Alaska E43] gi|254781291|sp|B2UZ23|DNLJ_CLOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|188498071|gb|ACD51207.1| DNA ligase, NAD-dependent [Clostridium botulinum E3 str. Alaska E43] Length = 667 Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 218/712 (30%), Positives = 362/712 (50%), Gaps = 69/712 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED----PNGP 74 KEL + + SY YY P + D +YD ++ D + L E P P Sbjct: 9 KELVEILNKYSYD---YYVLDNPSVSDKDYD---KKYDELK-----LLEKETGVVLPYSP 57 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF-----WQKKDDNSIFFT 129 +IG + K TH SL+K ++++++ + R +F Q +D + + Sbjct: 58 TLRIGDIVLDGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNIKFVNDMRAQGEDLPDLKYI 117 Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 K DG + + Y E+G +A RG+G GE+V+A ++ I +IP L N ++ EV Sbjct: 118 ATKKFDGLTVNLTYNEEGMLEVSATRGNGEIGENVTAQVKTIKSIPLKLQEN-HDLFEVH 176 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247 GE +++ F N + P N RN A+G LR LN + R L+ F + +G Sbjct: 177 GEAIMTQEAFEKYN----SSADSPLKNLRNGAAGALRNLNVKETARRDLSAFFYDVGYKE 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 K EM+ ++ G PV++ ++ + I + + ++ IR L YDIDGLV +D Sbjct: 233 GYQFKTYLEMMDFIKEKGLPVDDYLKVCVSIEDIKNEIDYIEKIRFDLNYDIDGLVIAID 292 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ LG + P+W I++KF ++A+T+L+D++ +GR+G + P A LEPV + G Sbjct: 293 DIRTRELLGYTVKFPKWAIAYKFEAQEATTKLVDVEWNVGRSGRIGPTAILEPVELAGVT 352 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATL+N D IK R G +R+G V ++R+ +VIP+++ + N + Sbjct: 353 VKRATLNNMDDIK---------RKG--VRIGADVFIRRSNDVIPEIMGTLENTLENSEEI 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P+ CP C S VV L AH C L+C Q ++ + H+ SRDA NI G Sbjct: 402 FP-PTECPACGSHVV---------LNGAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGF 451 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ + F+ +I+ +D++ L++ + N+ FGD NL +++ + Sbjct: 452 SEKTAEQLFEK----LNIKSISDLYKLKKED------LINLEKFGDKKAENLLNAVEGSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L FI++LGI +VG + A+ + + S I N + L+ V VGD Sbjct: 502 ECKLYSFIYALGIPNVGVKTAKDIVNKFKS----------IDGLKNATFEELVSVQDVGD 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I+AQ I+EF++ + I ++ LL I K V S ++K +V TGTLQ R + Sbjct: 552 IVAQDIIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVATGTLQNYSRTEI 611 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA VS +S+KTD +I G++ GSKL KA++LGV++++EE+F +L Sbjct: 612 KTKLESLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVEVISEEEFEKML 663 >gi|322382981|ref|ZP_08056811.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153004|gb|EFX45464.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 673 Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 215/712 (30%), Positives = 351/712 (49%), Gaps = 68/712 (9%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +EI+ H+ YY +P I D EYDAL R + + PN P ++GG++ Sbjct: 11 LIEEINKHNYHYYTLDEPTITDQEYDALYDRLLKLEKESGTVL----PNSPTLRVGGDIL 66 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDNSIF----FTLEPKIDG 136 H SL+K +IE L+ + R+ + + K+ ++ F +E K DG Sbjct: 67 KGFEPHRHRSRLWSLDKAQSIEVLKNWHNRVQKLVNDYNSKNPSTPLPEPSFAVELKFDG 126 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRGEVYI 193 I + Y++G V A+ RG+G GE + A ++ I ++P L IP +IEV+GE + Sbjct: 127 LTINLTYDQGNLVQASTRGNGVVGEGILAQVKTIKSVP----LEIPYKEGLIEVQGEGMM 182 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 L++ D+ +P N RNAA+G LR LNP R L F + +G + Sbjct: 183 ----LLSVLDQYNQTAAEPLKNARNAAAGALRNLNPKVTAERRLTAFFYNVGFSDRKQFM 238 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 EM+ ++ F VN V+ NT + +++ R + IDG V KV + + Sbjct: 239 NHQEMIAFLKENHFKVNPYVKYFNTIDEVFEEMKKLEQERHDFDFLIDGAVIKVTDIRTR 298 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG + PRW I++KF ++ +T L + ++GRTG +TPVA++EPV + G + N T Sbjct: 299 EVLGYTEKFPRWAIAYKFEAEEVTTVLEGVSWEVGRTGKITPVAKVEPVELAGVTVQNCT 358 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 L+N G + R +G V ++R+ +VIP+++ + E D + +P Sbjct: 359 LNN---------IGDIERKNLKHALGSLVYIRRSNDVIPEILGKVTEE--IDGEEIKYPE 407 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C + +L + L C L C Q + R+ HF SRDA +IE + Sbjct: 408 HCPACGT----ELEQRGAHLF----CPNRLGCKPQLIGRITHFASRDAMDIETFSVMTAE 459 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 ++ D +R PAD++ L + I + FG+ NL D+I K + L Sbjct: 460 QLYQQLD----VRDPADLYDL------TYDDIIQLPRFGEKKANNLLDAIEKSKERDLSS 509 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+F+LGI + G + LA+++ S + LI +P VG I+A +I Sbjct: 510 FLFALGIPNTGKTTTKVLAEHFRSLDKVMDAVVE----------ELIALPDVGGIVADSI 559 Query: 613 VEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+++P I ++ + K ++ G+ E + K +V TGTL + R +A Sbjct: 560 YTFFRDPIMIESIRRMKKAGVQAQMEAEEGKAEIDPGHPFYGKTIVLTGTLSSMSRDEAA 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFLL 718 + + LGA V+ +S+KTDI+I G+N GSKL KA+QLG++++ NE++ L LL Sbjct: 620 KKLESLGAKVTGSVSKKTDIVIAGENAGSKLAKAEQLGIRVIDNEDELLHLL 671 >gi|269794376|ref|YP_003313831.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542] gi|269096561|gb|ACZ20997.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542] Length = 871 Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 204/651 (31%), Positives = 320/651 (49%), Gaps = 90/651 (13%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + AR + L + I H YY P + D+EYD L R I A P L P+ Sbjct: 41 LSAARTRWAELAETIEAHQFAYYVRDAPTVSDAEYDTLLRELGDIEEAHPQL---RTPDS 97 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + V H LSL+ +N EDL + R++R + + + + E K Sbjct: 98 PTQRVGGTFSTDFAAVDHREQMLSLDNAFNAEDLDAWAERVHR---EIGTSQVHYLCEVK 154 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVRGE 190 IDG I + YEKG+ V AA RGDG +GEDV+ + I IP+ L ++ P++IE+RGE Sbjct: 155 IDGLAIALLYEKGRLVRAATRGDGRTGEDVTLNVLTIEGIPKALDASVREVPDLIEIRGE 214 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK---- 245 V++ + F ALN+ +A G+ P+ANPRNAA+G LR+ NP R L + HG+G Sbjct: 215 VFMLVDQFAALNEAQVAAGKPPFANPRNAAAGSLRQKNPKITAGRPLRMYAHGVGALHWE 274 Query: 246 ---TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDI 299 SE+ + Q + R G PV++ R G+ + YY + R + +++ Sbjct: 275 AGTPSEL--RRQSDAYDYFRAWGVPVSDHNRVVEGMPGVQEMIDYYGDH---RHDIEHEL 329 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KVDE +LQ+QLG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP +E Sbjct: 330 DGIVVKVDELALQRQLGATSRAPRWAIAYKYPPEEVNTTLLDILVNVGRTGRVTPFGMME 389 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G+ ++ ATLHN +V R G + +GD V++++AG+VIP++V +V+ Sbjct: 390 PVLVAGSTVSMATLHN---------GSEVRRKG--VLIGDTVVLRKAGDVIPEIVGPVVD 438 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R + F P+ CP C + L P K G + RC +C +Q ER+ H R Sbjct: 439 LRDGSEREFVMPTECPSCGTT----LAPAKEGDVDI--RCPNQRSCPSQLRERVFHLAGR 492 Query: 479 DAFNIEGLGKQQLDFFFKSED--------PAFSIRIP----------------ADIFTLQ 514 AF+IE +G + E +++P AD+ + Sbjct: 493 GAFDIEAMGWEAAIALVDPEHNRPESADAEGVPVQVPVLETEAGFFDFEVDALADVLVWR 552 Query: 515 RRQQT--STTKIENILGFG-----------DVSVTNLYDSINKRRNISLERFIFSLGIRH 561 +++ T E + F + ++ K + L R + +L IRH Sbjct: 553 EKKKAGVGTGVWEQVPFFWTKATAKTPSKPSATTVKFFEEREKAKARPLWRVLVALSIRH 612 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 VG AR+LA + S + I+A ++ L VG IA+A+ Sbjct: 613 VGPTAARALATAFES-------VEAIMAATEEE---LAATEGVGPTIARAV 653 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 51/81 (62%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 ++++ +E +V TG+L+ R + +E + G + +S+KTD ++VG+N GSK Sbjct: 759 DESIVRTLEGFTVVVTGSLEGFNRDQVKEAIIVRGGKAAGSVSKKTDFVVVGENAGSKEA 818 Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720 KA++LG+ I++E F+ LL + Sbjct: 819 KARELGLTILDEAGFVTLLAE 839 >gi|51598803|ref|YP_072991.1| NAD-dependent DNA ligase LigA [Borrelia garinii PBi] gi|81609923|sp|Q660X2|DNLJ_BORGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|51573374|gb|AAU07399.1| DNA ligase [Borrelia garinii PBi] Length = 660 Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 215/704 (30%), Positives = 361/704 (51%), Gaps = 61/704 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E+ L++ I D YY S P + D YD R + P+ + P Sbjct: 4 KIQQEIEDLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESRHPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ + +V HS+P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ IR I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +F +N + KPY + RN ASGILRR++ ++ + LN F++ +E+ K Sbjct: 173 ENFFKINKFL----EKPYTSSRNLASGILRRVDSREVANFPLNIFIYDF-LNAELELKTN 227 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + K++ LGF V+ +R Q ++ +++Y ++ R++ Y+IDG+V KV EF L Sbjct: 228 DLAIAKLKKLGFKVDPLIRFFDQKSSIIEVLNYIADITKKRNSFEYEIDGVVLKVSEFVL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG + P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA ITNA Sbjct: 288 REKLGYTSHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITNA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI + + VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYIISI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKCSKGV--FKVP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ +V++ AH +C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKTVLVKE---------GAHFFCTNNSCPSVAVERIKYFCSKNCMDIEGFSDKTI 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ E I D++T + K+ GF D V NL +SI + Sbjct: 445 SFLFEKE----FISSEIDLYTF------NFYKLLKFKGFKDRKVYNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G R L +L+ N ++ + N + +L+++ +G+ IA Sbjct: 495 KLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRNFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I+E + + + E L ++ SI ++N + KK TGT R + Sbjct: 552 IIEAFNDSTMLNKFKFFENLGFKMEESILIDDEN--RLLAGKKFCITGTFNGYSRSIIID 609 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 + GA+ ++ D +IVG+ GSKLEKA L VKIM+ E Sbjct: 610 KLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFE 653 >gi|313763487|gb|EFS34851.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA1] gi|313773641|gb|EFS39607.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL074PA1] gi|313801268|gb|EFS42519.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA2] gi|313808052|gb|EFS46533.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA2] gi|313811476|gb|EFS49190.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA1] gi|313813500|gb|EFS51214.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA1] gi|313816668|gb|EFS54382.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA1] gi|313819621|gb|EFS57335.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA2] gi|313826033|gb|EFS63747.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA1] gi|313829503|gb|EFS67217.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA2] gi|313831217|gb|EFS68931.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL007PA1] gi|313840009|gb|EFS77723.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL086PA1] gi|314914784|gb|EFS78615.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA4] gi|314920694|gb|EFS84525.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA3] gi|314930573|gb|EFS94404.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL067PA1] gi|314954471|gb|EFS98877.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA1] gi|314961961|gb|EFT06062.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA2] gi|314963768|gb|EFT07868.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA1] gi|314968405|gb|EFT12503.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA1] gi|314974093|gb|EFT18189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA1] gi|314976617|gb|EFT20712.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL045PA1] gi|314978931|gb|EFT23025.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA2] gi|314984280|gb|EFT28372.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA1] gi|314986627|gb|EFT30719.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA2] gi|314990983|gb|EFT35074.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA3] gi|315079616|gb|EFT51609.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA2] gi|315081153|gb|EFT53129.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL078PA1] gi|315087038|gb|EFT59014.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA3] gi|315089213|gb|EFT61189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA1] gi|315095437|gb|EFT67413.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL038PA1] gi|315099114|gb|EFT71090.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA2] gi|315100402|gb|EFT72378.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA1] gi|315109094|gb|EFT81070.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA2] gi|327328505|gb|EGE70267.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA2] gi|327329632|gb|EGE71388.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA3] gi|327334143|gb|EGE75857.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL097PA1] gi|327444292|gb|EGE90946.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA2] gi|327444828|gb|EGE91482.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA1] gi|327446317|gb|EGE92971.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA2] gi|327452096|gb|EGE98750.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL092PA1] gi|327454866|gb|EGF01521.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA3] gi|327457850|gb|EGF04505.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA2] gi|328752459|gb|EGF66075.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL020PA1] gi|328755302|gb|EGF68918.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA1] gi|328758217|gb|EGF71833.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA2] gi|328759940|gb|EGF73524.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL099PA1] Length = 740 Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 224/748 (29%), Positives = 359/748 (47%), Gaps = 80/748 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 19 EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 75 Query: 76 NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ F V H LSL+ ++ ++L +++ R+ K + F E KI Sbjct: 76 QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 131 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +P ++EVRGEV+ Sbjct: 132 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 191 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 192 PVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 251 Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q K+ G PV+ V + H V+ + E R + IDG+V KVD+ Sbjct: 252 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 308 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + Sbjct: 309 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 368 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F Sbjct: 369 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 417 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 418 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 472 Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520 E D + +P A +F LQ RR++ + Sbjct: 473 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 532 Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 T + ++D + K ++ L R + +L IRHVG AR+LA Sbjct: 533 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 ++ S + + +A V VG+IIA+++ +++ + + Sbjct: 593 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 642 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG Sbjct: 643 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 702 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +N GSK KA+ LG I++E F +LL+ Sbjct: 703 ENAGSKETKARDLGRPILDEAGFRYLLE 730 >gi|161621794|ref|YP_056321.2| NAD-dependent DNA ligase LigA [Propionibacterium acnes KPA171202] gi|315106904|gb|EFT78880.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA1] Length = 740 Score = 306 bits (784), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 224/748 (29%), Positives = 359/748 (47%), Gaps = 80/748 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 19 EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 75 Query: 76 NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ F V H LSL+ ++ ++L +++ R+ K + F E KI Sbjct: 76 QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 131 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +P ++EVRGEV+ Sbjct: 132 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 191 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 192 PVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 251 Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q K+ G PV+ V + H V+ + E R + IDG+V KVD+ Sbjct: 252 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 308 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + Sbjct: 309 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 368 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F Sbjct: 369 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 417 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 418 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 472 Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520 E D + +P A +F LQ RR++ + Sbjct: 473 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEIKVWRRRKVNGGPG 532 Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 T + ++D + K ++ L R + +L IRHVG AR+LA Sbjct: 533 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 ++ S + + +A V VG+IIA+++ +++ + + Sbjct: 593 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 642 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG Sbjct: 643 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 702 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +N GSK KA+ LG I++E F +LL+ Sbjct: 703 ENAGSKETKARDLGRPILDEAGFRYLLE 730 >gi|313793877|gb|EFS41901.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA1] Length = 740 Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 224/748 (29%), Positives = 359/748 (47%), Gaps = 80/748 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 19 EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 75 Query: 76 NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ F V H LSL+ ++ ++L +++ R+ K + F E KI Sbjct: 76 QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 131 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +P ++EVRGEV+ Sbjct: 132 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 191 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 192 PVADFTDLNAALIEAGKNPFANPRNAAAGPLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 251 Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q K+ G PV+ V + H V+ + E R + IDG+V KVD+ Sbjct: 252 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 308 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + Sbjct: 309 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 368 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F Sbjct: 369 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 417 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 418 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 472 Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520 E D + +P A +F LQ RR++ + Sbjct: 473 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 532 Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 T + ++D + K ++ L R + +L IRHVG AR+LA Sbjct: 533 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 ++ S + + +A V VG+IIA+++ +++ + + Sbjct: 593 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 642 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG Sbjct: 643 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 702 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +N GSK KA+ LG I++E F +LL+ Sbjct: 703 ENAGSKETKARDLGRPILDEAGFRYLLE 730 >gi|330837729|ref|YP_004412370.1| DNA ligase [Spirochaeta coccoides DSM 17374] gi|329749632|gb|AEC02988.1| DNA ligase [Spirochaeta coccoides DSM 17374] Length = 716 Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 224/731 (30%), Positives = 350/731 (47%), Gaps = 75/731 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A + ++ L + + YY +P + D EYD L A+ A PD+ ++ P Sbjct: 5 ETAVRRMAELSRILLDAQHEYYVLGRPSMSDKEYDTLMDELAALEAAHPDVKEADSPT-- 62 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ +V HSIP LSL+K ++ E + ++ + K D + F +E KI Sbjct: 63 -QRVGSDLTSDFPEVRHSIPVLSLDKAYSAEAIVSWMNKA----GLKADTGLSFIVEEKI 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + + YEKG V A RG+G G DV+A IR I +P L L+ P I VRGEVY+ Sbjct: 118 DGVSMVLYYEKGILVRAVTRGNGTVGNDVTANIRTIAAVP--LRLSEPLDIAVRGEVYLP 175 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH-GLGKTSEIFAK 252 K F LN M PYANPRN A+G +RR+ ++ R L FV+ Sbjct: 176 KESFSVLNKTM----EIPYANPRNLAAGTIRRIKSSETARVPLTIFVYEAYFAGDATLYP 231 Query: 253 GQYEMLQKMRCLGFPVN-------------------NGVRQ-ANTFHGIVSYYNEMKSIR 292 E+L + LGF VN +GV+ + F + Y + + R Sbjct: 232 NHVELLAALVRLGFRVNPHLGVFASGRQEAEALLSASGVQGFSGAFDDLAGYISGVTRER 291 Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352 LPY+IDGLV KV++ +L+ G PRW I++KF A T + DID+Q+GRTG + Sbjct: 292 GNLPYEIDGLVVKVNDLALRDVFGYTGHHPRWAIAYKFESPAAQTVVQDIDVQVGRTGRI 351 Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412 TP+AR+ V IGG++++N TLHN+DYI L ++ +GD V V + G+VIP Sbjct: 352 TPMARVRSVPIGGSVVSNVTLHNQDYIDLL-----------ELAIGDTVEVSKRGDVIP- 399 Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLER 471 V+ +V + + P+ CP C S +V + AH C C AQ R Sbjct: 400 AVERVVEKNEEGNTTWRIPAICPSCGSTLV---------IRGAHTFCPNASGCPAQVGGR 450 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 ++ FV +D +I G + + A S IP DI+TL R+ ++ GFG Sbjct: 451 IQFFVGKDGMDIANFGPETVTVLRNIN--ALS-DIP-DIYTLDYRR-----VLDGQPGFG 501 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 ++ + + RN + +LG+ G + L S ++ Q ++ + H+ Sbjct: 502 KKKISLIVTGVEDSRNRPFRVVLSALGLPDFGRKAVDQLLDAG-SIRSMEQLLHIVDTHD 560 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IE 648 D +L +P +G+ +A ++E P + A L E S VS Sbjct: 561 MD---TLTSIPQIGEKMAMTLIESLSAPEMRARIHA-LGEAGLSFEEEASQVSDVPQIFA 616 Query: 649 NKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 + TG+ + R KA V + G V++ ++ KT ++ G GSKL +AQ+ G + Sbjct: 617 GQTWCVTGSFEHFSPREKAMVEVKKRGGRVTSSVTGKTTHLLAGGGAGSKLSQAQKAGAR 676 Query: 708 IMNEEQFLFLL 718 I++E++FL +L Sbjct: 677 IVSEDEFLGML 687 >gi|193216704|ref|YP_001999946.1| DNA ligase [Mycoplasma arthritidis 158L3-1] gi|254781372|sp|B3PMJ0|DNLJ_MYCA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|193002027|gb|ACF07242.1| DNA ligase [Mycoplasma arthritidis 158L3-1] Length = 665 Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 229/710 (32%), Positives = 360/710 (50%), Gaps = 57/710 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYD----ALKRRCDAIAHAFPDLARSED 70 E+ R E+ L+ +I+ D+ YY P++ D+ YD LK+ + + F + E Sbjct: 5 EKIRNEVFELQAKINEWDNAYYNLDAPLVEDAIYDREILKLKKLEEQYSSYF---SFEEL 61 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 N P KI + + KVTH P LSL K + E+++KFI I KK + F L Sbjct: 62 ANSPTQKINAKSSDLFKKVTHDSPMLSLNKAYTEEEIQKFIDNI-----KKVTPTFSFFL 116 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 EPKIDG I+I+Y G+ A RGDG GEDV+ I+ I IP+ ++ P +EVRGE Sbjct: 117 EPKIDGLSISIKYRNGQLFQAVTRGDGLVGEDVTENIKQIKNIPKEIAYQKP--LEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249 VY++ ++F +N + ANPRNAA+G LR+L+ + R L+ F++ + + Sbjct: 175 VYLALSEFEKINLNFQKENKPLMANPRNAAAGTLRQLDKEIVANRNLSAFLYNIVAPEDH 234 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E ++ LGF V A I SY K ++ TL Y+ DG+V K++E Sbjct: 235 NIFTILEARDFLKNLGFSVTKEATYAKDLSEINSYIENFKHLKKTLDYETDGVVIKLNEL 294 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LG + P I+ K+ +T L +I I +GRTG++T A LEPV + G+ IT Sbjct: 295 QHYDALGATNKFPHSAIAFKYEPNTTTTVLKNIFITVGRTGLVTYNAELEPVILSGSCIT 354 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATL+N YIK L + GD V +K+AGE+IP V+ +VN++H + + Sbjct: 355 FATLNNYQYIKDL-----------KLNKGDLVYIKKAGEIIPCVIG-LVNKKHEETEFNK 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 F CP C S ++ +T L+ + C+ C + +++ HF S+ A + LG++ Sbjct: 403 FLK-CPYCNSDLI-----ETDTLLEQY-CSNE-NCPEIRRKKIIHFASKKAMELNSLGEK 454 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D F + D + L+ ++ KI ++ FG SV N+ SI + + S Sbjct: 455 NIDVFINEG----LLENVIDFYKLKEKKD----KIMSLERFGTKSVMNILKSIEESKKNS 506 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L+R IF L I+H+G+++A LA L NF + D+ SLI +G+ I Sbjct: 507 LDRVIFGLSIKHIGSKVAYFLASKILKLSNFL----------DFDFDSLISYNEIGEKII 556 Query: 610 QAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ + N V+ LL +V +K + V TGTL + + H ++ Sbjct: 557 SSLKNWVAKEENKNLVKDLLDNDVDLEFIATKK--TERFAQLSFVITGTLSQPRSH-FEK 613 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + G +S+ +S KT ++VG++ GSKL KA+ L VKI++EE F LL Sbjct: 614 LIKENGGSISSAVSAKTSYLLVGEDAGSKLAKARALNVKILDEEAFNELL 663 >gi|289426325|ref|ZP_06428068.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187] gi|295131143|ref|YP_003581806.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137] gi|289153053|gb|EFD01771.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187] gi|291375741|gb|ADD99595.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137] gi|332676019|gb|AEE72835.1| DNA ligase [Propionibacterium acnes 266] Length = 753 Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 224/748 (29%), Positives = 359/748 (47%), Gaps = 80/748 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 32 EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 88 Query: 76 NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ F V H LSL+ ++ ++L +++ R+ K + F E KI Sbjct: 89 QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 144 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +P ++EVRGEV+ Sbjct: 145 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 204 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 205 PVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 264 Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q K+ G PV+ V + H V+ + E R + IDG+V KVD+ Sbjct: 265 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 321 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + Sbjct: 322 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 381 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F Sbjct: 382 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 430 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 431 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 485 Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520 E D + +P A +F LQ RR++ + Sbjct: 486 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 545 Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 T + ++D + K ++ L R + +L IRHVG AR+LA Sbjct: 546 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 605 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 ++ S + + +A V VG+IIA+++ +++ + + Sbjct: 606 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 655 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG Sbjct: 656 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 715 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +N GSK KA+ LG I++E F +LL+ Sbjct: 716 ENAGSKETKARDLGRPILDEAGFRYLLE 743 >gi|313834239|gb|EFS71953.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL056PA1] gi|314924752|gb|EFS88583.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA3] Length = 740 Score = 306 bits (784), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 224/748 (29%), Positives = 359/748 (47%), Gaps = 80/748 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 19 EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 75 Query: 76 NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ F V H LSL+ ++ ++L +++ R+ K + F E KI Sbjct: 76 QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 131 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +P ++EVRGEV+ Sbjct: 132 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 191 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 192 PVADFTDLNAALIEAGKTPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 251 Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q K+ G PV+ V + H V+ + E R + IDG+V KVD+ Sbjct: 252 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 308 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + Sbjct: 309 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 368 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F Sbjct: 369 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 417 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 418 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 472 Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520 E D + +P A +F LQ RR++ + Sbjct: 473 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 532 Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 T + ++D + K ++ L R + +L IRHVG AR+LA Sbjct: 533 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 ++ S + + +A V VG+IIA+++ +++ + + Sbjct: 593 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 642 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG Sbjct: 643 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 702 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +N GSK KA+ LG I++E F +LL+ Sbjct: 703 ENAGSKETKARDLGRPILDEAGFRYLLE 730 >gi|81611354|sp|Q6A7A2|DNLJ_PROAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50840696|gb|AAT83363.1| DNA ligase [Propionibacterium acnes KPA171202] Length = 772 Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 224/748 (29%), Positives = 359/748 (47%), Gaps = 80/748 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 51 EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 107 Query: 76 NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ F V H LSL+ ++ ++L +++ R+ K + F E KI Sbjct: 108 QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 163 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +P ++EVRGEV+ Sbjct: 164 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 223 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 224 PVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 283 Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q K+ G PV+ V + H V+ + E R + IDG+V KVD+ Sbjct: 284 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 340 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + Sbjct: 341 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 400 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F Sbjct: 401 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 449 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 450 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 504 Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520 E D + +P A +F LQ RR++ + Sbjct: 505 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEIKVWRRRKVNGGPG 564 Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 T + ++D + K ++ L R + +L IRHVG AR+LA Sbjct: 565 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 624 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 ++ S + + +A V VG+IIA+++ +++ + + Sbjct: 625 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 674 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG Sbjct: 675 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 734 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +N GSK KA+ LG I++E F +LL+ Sbjct: 735 ENAGSKETKARDLGRPILDEAGFRYLLE 762 >gi|251777669|ref|ZP_04820589.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243081984|gb|EES47874.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 667 Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 218/712 (30%), Positives = 361/712 (50%), Gaps = 69/712 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED----PNGP 74 KEL + + SY YY P + D +YD ++ D + L E P P Sbjct: 9 KELVEILNKYSYD---YYVLDNPSVSDKDYD---KKYDELK-----LLEKETGFVLPYSP 57 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF-----WQKKDDNSIFFT 129 +IG + K TH SL+K ++++++ + R +F Q +D + + Sbjct: 58 TLRIGDIVLDGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNVKFVNEMRAQGEDLPDLKYI 117 Query: 130 LEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 K DG + + Y E+G +A RG+G GE+V+A ++ I +IP L N ++ EV Sbjct: 118 ATKKFDGLTVNLTYNEEGMLEVSATRGNGEIGENVTAQVKTIKSIPLKLQEN-HDLFEVH 176 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTS 247 GE +++ F N + P N RN A+G LR LN + R L+ F + +G Sbjct: 177 GEAIMTQEAFEKYN----SSADSPLKNLRNGAAGALRNLNVKETARRDLSAFFYDVGYKE 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 K EM+ ++ G PV++ ++ + I + + ++ IR L YDIDGLV +D Sbjct: 233 GYQFKTYLEMMDFIKEKGLPVDDYLKVCVSIEDIKNEIDYIEKIRFDLNYDIDGLVIAID 292 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ LG + P+W I++KF ++A+T+LLD++ +GR+G + P A LEPV + G Sbjct: 293 DIKTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRIGPTAILEPVELAGVT 352 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATL+N D IK R G +R+G V ++R+ +VIP+++ + N + Sbjct: 353 VKRATLNNMDDIK---------RKG--VRIGADVFIRRSNDVIPEIMGTLENTLENSEEI 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P CP C S VV L AH C L+C Q ++ + H+ SRDA NI G Sbjct: 402 FP-PIECPACGSHVV---------LNGAHYFCENTLSCKPQLVKTIVHYASRDAMNIAGF 451 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ + F+ +I+ +D++ L++ + N+ FGD NL +++ + Sbjct: 452 SEKTAEQLFEK----LNIKSISDLYKLKKED------LINLEKFGDKKAENLLNAVEGSK 501 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L FI++LGI +VG + A+ + + S I N + L+ V VGD Sbjct: 502 ECKLYSFIYALGIPNVGVKTAKDIVNKFKS----------IDGLKNATFEELVSVQDVGD 551 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 I+A+ I+EF++ + I ++ LL I K V S ++K +V TGTLQ R + Sbjct: 552 IVAKDIIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVATGTLQNYSRTEI 611 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA VS +S+KTD +I G++ GSKL KA++LGV++++EE+F +L Sbjct: 612 KTKLESLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVEVISEEEFEKML 663 >gi|182419331|ref|ZP_02950583.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521] gi|237666454|ref|ZP_04526439.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376662|gb|EDT74234.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521] gi|237657653|gb|EEP55208.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E BL5262] Length = 663 Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 213/716 (29%), Positives = 362/716 (50%), Gaps = 71/716 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------P 71 ++++ L ++++ + YY P + D EYD + + +L + E+ P Sbjct: 4 KEKIKELVEQLNNYSYKYYVLDDPSVTDKEYDKI----------YDELKKLEEETGFVLP 53 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDN--SI 126 P ++G + K TH SL+K +IE++ + R +F + K +N + Sbjct: 54 YSPTLRVGDIVLDGFEKYTHKAKLWSLDKAQSIEEIIDWHNRNVKFVNDMRLKGENLPDL 113 Query: 127 FFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + L K DG I + Y E+G AA RG G+ GE+V+A ++ I +IP L + I+ Sbjct: 114 KYVLTKKFDGLTINLTYNEEGVMEIAATRGTGNIGENVTAQVKTIKSIP--LKIENNHIL 171 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLG 244 EV GE +++ F N+ + P N RN A+G LR LN + R L+ F + +G Sbjct: 172 EVHGEAVMTQEAFDKYNES----AQVPLKNLRNGAAGALRNLNVKETARRNLSAFFYDIG 227 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 K EML ++ G P+++ ++ T I + + SIR L YDIDGLV Sbjct: 228 YKEGSPFKTYLEMLNFIKEKGLPMDDYMKVCTTIDEIQEQIDYINSIRFDLNYDIDGLVV 287 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 +D+ ++ +G + P+W I++KF ++A+T+LL ++ +GR+G L P A LEPV + Sbjct: 288 AIDDMRTRELMGYTVKFPKWAIAYKFEAQEATTKLLGVEWNVGRSGRLAPTAILEPVELA 347 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + ATL+N D + R G +++G V V+R+ +VIP+++ IV E Sbjct: 348 GVTVKRATLNNMD---------DIARKG--VKIGADVFVRRSNDVIPEIMG-IVPETLDG 395 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+ P+ CP C S ++ D A + C L+C Q ++ + H+ R+A NI Sbjct: 396 AEDIKPPTECPACGSHIILD--------GAHYFCENTLSCKPQMVKSIVHYACREAMNIA 447 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G ++ + F+ +I+ +D++ L+ + K FG NL ++I Sbjct: 448 GFSERTAEQLFEK----LNIKSISDLYKLKEEELIDLEK------FGPKKAQNLLEAIEN 497 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + L FI++LGI +VG + A+ L + S + N + L+ VP V Sbjct: 498 SKECELHAFIYALGIPNVGVKTAKDLVSRFKSIEGL----------KNATFEELVSVPDV 547 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 GDI+AQ ++ F++ + + ++ LL V+P E + K +V TG+LQ R Sbjct: 548 GDIVAQDVMSFFKEEKVLETIDELLALGVNPKFEEFEV-TENPFMGKTVVATGSLQNYSR 606 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +E + LGA V+ +S+KTD +I G+ GSKL KAQ+LGVK+++EE+F +L+ Sbjct: 607 SEIKEKLESLGAKVAGSVSKKTDYVIAGEAAGSKLTKAQELGVKVLSEEEFEEILR 662 >gi|314957538|gb|EFT01641.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA1] Length = 724 Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 224/748 (29%), Positives = 359/748 (47%), Gaps = 80/748 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 3 EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 59 Query: 76 NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ F V H LSL+ ++ ++L +++ R+ K + F E KI Sbjct: 60 QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +P ++EVRGEV+ Sbjct: 116 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 175 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 176 PVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 235 Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q K+ G PV+ V + H V+ + E R + IDG+V KVD+ Sbjct: 236 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + Sbjct: 293 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 352 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F Sbjct: 353 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 401 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 402 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 456 Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520 E D + +P A +F LQ RR++ + Sbjct: 457 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 516 Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 T + ++D + K ++ L R + +L IRHVG AR+LA Sbjct: 517 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 576 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 ++ S + + +A V VG+IIA+++ +++ + + Sbjct: 577 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 626 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG Sbjct: 627 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 686 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +N GSK KA+ LG I++E F +LL+ Sbjct: 687 ENAGSKETKARDLGRPILDEAGFRYLLE 714 >gi|315083671|gb|EFT55647.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA2] Length = 740 Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 224/747 (29%), Positives = 358/747 (47%), Gaps = 80/747 (10%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 20 ARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQ 76 Query: 77 KIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G ++ F V H LSL+ ++ ++L +++ R+ K + F E KID Sbjct: 77 RVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKID 132 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYIS 194 G + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +P ++EVRGEV+ Sbjct: 133 GLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFFP 192 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 193 VADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPS 252 Query: 254 QYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Q K+ G PV+ V + H V+ + E R + IDG+V KVD+ S Sbjct: 253 QGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDVS 309 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + Sbjct: 310 LQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVEM 369 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F Sbjct: 370 ATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLM 418 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 419 PDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWEA 473 Query: 491 LDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS----- 520 E D + +P A +F LQ RR++ + Sbjct: 474 AIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPGP 533 Query: 521 --------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 T + ++D + K ++ L R + +L IRHVG AR+LA Sbjct: 534 WQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALAT 593 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV 632 ++ S + + +A V VG+IIA+++ +++ + + Sbjct: 594 HFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAG 643 Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+ Sbjct: 644 VRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGE 703 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 N GSK KA+ LG I++E F +LL+ Sbjct: 704 NAGSKETKARDLGRPILDEAGFRYLLE 730 >gi|298486340|ref|ZP_07004403.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159347|gb|EFI00405.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 628 Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 173/458 (37%), Positives = 261/458 (56%), Gaps = 40/458 (8%) Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFF 239 P+++EVRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ + IT R L F Sbjct: 14 PDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFC 72 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 +GLG+TS A +L+ ++ G PV+ ++ AN + YY ++ R TL Y+I Sbjct: 73 CYGLGQTSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEI 132 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V+KV+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPVARL+ Sbjct: 133 DGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLK 192 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ NATLHN D + L + +GD V+++RAG+VIP+VV ++ Sbjct: 193 PVKVAGVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQVVQVVAE 241 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLK 473 R +A+ P CP+C S V R + GK A +RC G LAC AQ + + Sbjct: 242 RRPENARAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAII 301 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 H+VSR A +IEGLG + ++ + I PAD++ L+ Q I ++ GF ++ Sbjct: 302 HYVSRRAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEI 351 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 S L +I R +L RFI++LGI VG E A+ LA+ S Q + ++ + Sbjct: 352 SSNKLLKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY--- 408 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +P VG +A I F+++ N ++ALL E Sbjct: 409 -------LPDVGLEVAYEIHSFFEDEHNRNVIDALLGE 439 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 16/183 (8%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + + A + DWL + + + + Sbjct: 457 STTLEGLIDKLHIPSVGPGAAQKLADRFGTLE----------AIISADWLDMRQT--LPE 504 Query: 607 IIAQAIVEFYQ---NPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQ 662 A+++ +F+ + A+EA LK+ +K V + + V TG+L+++ Sbjct: 505 KQAKSVRDFFDESAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLERMS 564 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L + Sbjct: 565 RDVAKEKLETLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLTELG 624 Query: 723 TTL 725 + Sbjct: 625 VAV 627 >gi|302392792|ref|YP_003828612.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501] gi|302204869|gb|ADL13547.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501] Length = 671 Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 225/714 (31%), Positives = 359/714 (50%), Gaps = 87/714 (12%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++EQ K+L + + +YH YY P++ D EYD L R L E+ Sbjct: 6 TLEQEMKKLINKLNKYNYH---YYVLDDPLVSDKEYDQLYDR----------LVELEEET 52 Query: 73 G------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR----FWQKKD 122 G P ++G E H P SL+K +LR + RI R + ++ Sbjct: 53 GKVLSGSPTQRVGAEPLDEFDSHQHLAPLWSLDKAQTGGELRDWDERIRRLIADYNREHP 112 Query: 123 DNSI---FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 +N + +T+E K DG I + YE+G+ V AA RG G GE + ++ I TIP L Sbjct: 113 ENPLPEPLYTVEYKFDGLTINLTYEEGELVQAATRGTGEVGEAILEQVKTIKTIP----L 168 Query: 180 NIP---EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRY 235 IP +EV+GE + L++ +E P N RNAA+G LR L+P R Sbjct: 169 QIPFKSGKLEVQGEGIMR----LSVLEEYNQQAETPLKNARNAAAGALRNLDPKVTAERN 224 Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST- 294 L+ F + +G I E+L +R F VN+ ++ TF I EM++I Sbjct: 225 LDAFFYSIGYYEGIEFDTHLEILDFLRENRFMVNDYLK---TFDEIEDVIEEMETIEEKV 281 Query: 295 --LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352 L Y +DG+V KV++ Q+ LG AR+PRW I++KFA K+ +T LLD+ Q+GRTG L Sbjct: 282 DDLDYLVDGMVIKVNDLRTQEVLGYTARAPRWAIAYKFAAKEVTTTLLDVKWQVGRTGKL 341 Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412 TPVA LEPV+I GA ++ ATL+N D I+ +D+ G RV ++R+ +VIP+ Sbjct: 342 TPVALLEPVDIEGATVSKATLNNWDDIQ-----------RKDVAKGCRVWLRRSNDVIPE 390 Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLER 471 ++ + E + + + P CP C S +V+D H C L C Q + R Sbjct: 391 IIGRVETEEIEEVEEIAKPEECPDCGSSLVQD---------GVHLFCPNSLFCKPQLVAR 441 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 + HF SRDA IE ++ + ++ +R AD++ ++ + GFG Sbjct: 442 VAHFASRDALEIETFSEKTAEKLYEE----LGLRDIADLYDIEYEELLELE------GFG 491 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + NL D++ + +++ L FI+ LG+ +VG A LA + S + + Sbjct: 492 EQKAENLIDALEESKDVELSSFIYGLGVPNVGTRTAELLADKFKSLERLMEA-------- 543 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSI-GRHEKNVSSEIEN 649 D L+ + +G+++A+ IV+F+ + +++ +L+ V P+ E S + Sbjct: 544 --DKEELVEINGIGEVVAEEIVDFFADENIQGSIQRMLEAGVEPNYEAIEEVQEDSPFVD 601 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 + +V TG+L + R +A+E + LG V++ +S TDI+IVG+NPGSKL+KA+Q Sbjct: 602 QTIVMTGSLPGLTRSEAKEKIKALGGKVTSSVSGNTDILIVGENPGSKLDKARQ 655 >gi|289428790|ref|ZP_06430473.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165] gi|289158188|gb|EFD06408.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165] Length = 753 Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 224/748 (29%), Positives = 358/748 (47%), Gaps = 80/748 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 32 EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 88 Query: 76 NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ F V H LSL+ ++ ++L +++ R+ K + F E KI Sbjct: 89 QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 144 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +P ++EVRGEV+ Sbjct: 145 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 204 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 205 PVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 264 Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q K+ G PV+ V + H V+ + E R + IDG+V KVD+ Sbjct: 265 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 321 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + Sbjct: 322 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 381 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F Sbjct: 382 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 430 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + + N RC C +Q ER+ SR A +IE LG + Sbjct: 431 MPDHCPSCGVELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 485 Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520 E D + +P A +F LQ RR++ + Sbjct: 486 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 545 Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 T + ++D + K ++ L R + +L IRHVG AR+LA Sbjct: 546 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 605 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 ++ S + + +A V VG+IIA+++ +++ + + Sbjct: 606 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 655 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG Sbjct: 656 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 715 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +N GSK KA+ LG I++E F +LL+ Sbjct: 716 ENAGSKETKARDLGRPILDEAGFRYLLE 743 >gi|150015242|ref|YP_001307496.1| NAD-dependent DNA ligase LigA [Clostridium beijerinckii NCIMB 8052] gi|190359245|sp|A6LQB0|DNLJ_CLOB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149901707|gb|ABR32540.1| DNA ligase, NAD-dependent [Clostridium beijerinckii NCIMB 8052] Length = 663 Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 210/700 (30%), Positives = 360/700 (51%), Gaps = 71/700 (10%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGPLNKIGGEMNLSLFKVTH 91 YY P + D +YD + +L R + P P ++G + K TH Sbjct: 21 YYSLDSPSVSDKDYDEK-------YYELQELERETEYVLPYSPTLRVGDVVLEGFRKYTH 73 Query: 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQK---KDDN--SIFFTLEPKIDGTMITIRYE-K 145 SL+K +++++ + R +F ++ + +N + + + K DG I + Y + Sbjct: 74 KARLWSLDKAQSLQEIIDWHNRNVKFVEEARGRGENLPDLKYVVTKKFDGLTINLTYNTE 133 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205 G AA RG G GE+V+A ++ I +IP L +N +I+EV GE +++ F N+ Sbjct: 134 GILEIAATRGTGSIGEEVTAQVKTIKSIP--LKINSNDILEVHGEAIMTQEAFNKYNE-- 189 Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 P N RN A+G LR LN + R L+ F + +G K EM++ ++ Sbjct: 190 --TSDTPLKNLRNGAAGALRNLNVKETARRNLSAFFYDVGYKEGTPFKTYMEMMEFIKQQ 247 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 G PV++ +R + I + ++ IR L YDIDGLV +D+ ++ +G + P+W Sbjct: 248 GLPVDDYIRVCTSIEEIEKEIDYVRDIRFDLNYDIDGLVIAIDDIRTRELIGYTVKFPKW 307 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 I+ KF ++A+T+LLD++ +GR+G + P A LEPV + G + ATL+N D Sbjct: 308 AIAFKFEAQEATTKLLDVEWNVGRSGRVGPTAILEPVELAGVTVKRATLNNMD------- 360 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 + R G +R+G V V+R+ +VIP+++ IV E ++ S P CP C S +V Sbjct: 361 --DIARKG--VRIGAEVFVRRSNDVIPEIMG-IVPESLEGSEEISVPEVCPACGSHLV-- 413 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 LN A + C L+C Q ++ + H+ SR+A NI G ++ + F+ +I Sbjct: 414 LNG------AHYFCENTLSCKPQLVKTIVHYASREAMNIAGFSERTAEQLFEK----LNI 463 Query: 505 RIPADIFTLQRRQQTSTTKIENILG---FGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + +D++ L+ E+++G F NL ++I K ++ L FI++LGI + Sbjct: 464 KSISDLYKLKE---------EDLIGLEKFAAKKAQNLLEAIEKSKDCELYAFIYALGIPN 514 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG + A+ L + S + N + L+ V VGDI+AQ ++ F++ + Sbjct: 515 VGVKTAKDLVSRFESIEGL----------KNATFEELVGVQDVGDIVAQGVLAFFKEEKV 564 Query: 622 ICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 + +E LL VSP E ++S E K +V TG+L+ R + ++ + LGA V+ Sbjct: 565 LQTIEELLSLGVSPKYEEKEV-IASAFEGKTVVATGSLKNYSRTEIKDKLESLGAKVAGS 623 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +S+KTD +I G+ GSKL KA++LG+KI++E++F +L++ Sbjct: 624 VSKKTDYVIAGEAAGSKLTKAEELGIKILSEDEFEEMLRR 663 >gi|308375959|ref|ZP_07668156.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007] gi|308344705|gb|EFP33556.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007] Length = 614 Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 189/580 (32%), Positives = 299/580 (51%), Gaps = 39/580 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ +L +E+ H YY PII D+E+D L RR +A+ P+L P+ P + Sbjct: 15 RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 71 Query: 79 GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + F+ V H LSL+ + ++L + RI+ + ++ + E KIDG Sbjct: 72 GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIH----AEVGDAAHYLCELKIDGV 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 +++ Y +G+ A+ RGDG +GEDV+ R I +P L+ +PE++EVRGEV+ Sbjct: 128 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 187 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG Sbjct: 188 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 247 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ +R G PV+ A G+ + Y+ E R + ++IDG+V KVDE Sbjct: 248 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEV 304 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + Sbjct: 305 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVG 364 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN IK R G + +GD V++++AG+VIP+V+ +V R + F Sbjct: 365 QATLHNASEIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFI 413 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP C S + + K G A RC C Q ER+ H SR+ +IE LG + Sbjct: 414 MPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYE 468 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +++ I ++F L R T G + L +++K + Sbjct: 469 AGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAP 524 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 L R + +L IRHVG AR+LA + S A + +A Sbjct: 525 LWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQLA 564 >gi|313822055|gb|EFS59769.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA1] gi|313823710|gb|EFS61424.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA2] Length = 740 Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 223/748 (29%), Positives = 358/748 (47%), Gaps = 80/748 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 19 EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 75 Query: 76 NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ F V H LSL+ ++ ++L +++ R+ K + F E KI Sbjct: 76 QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 131 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +P ++EVRGEV+ Sbjct: 132 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 191 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 DF LN +I G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Sbjct: 192 PVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 251 Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q K+ G PV+ V + H V+ + E R + IDG+V KVD+ Sbjct: 252 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 308 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + Sbjct: 309 FLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 368 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F Sbjct: 369 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 417 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 418 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 472 Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520 E D + +P A +F LQ RR++ + Sbjct: 473 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 532 Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 T + ++D + K ++ L R + +L IRHVG AR+LA Sbjct: 533 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 ++ S + + +A V VG+IIA+++ +++ + + Sbjct: 593 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 642 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG Sbjct: 643 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 702 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +N GSK KA+ LG I++E F +LL+ Sbjct: 703 ENAGSKETKARDLGRPILDEAGFRYLLE 730 >gi|262199205|ref|YP_003270414.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365] gi|262082552|gb|ACY18521.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365] Length = 751 Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 187/567 (32%), Positives = 298/567 (52%), Gaps = 40/567 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S + AR E L E+S HD YY ++PII D EYD L ++ AI P P Sbjct: 1 MSDDTARAEYLGLVDELSDHDRRYYVEAEPIISDVEYDKLLKKLRAIEEEHPAWVVEWSP 60 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD--NSIFFT 129 ++G S KV +P LSL+ ++ +L F R+ R D ++ + Sbjct: 61 T---QRVGHSPISSFPKVVREVPMLSLDNTYDESELADFHQRVLRGLGLSGDEAGAVNYV 117 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +EPKIDG + + YE+G F RGDG GED+S +R + +P L + I VRG Sbjct: 118 VEPKIDGIGVELSYERGAFRLGTTRGDGRVGEDISQNLRTLRGLPLRLREEVDLI--VRG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E ++++ DF ALN+ G +P+ NPRN +G L++L+P + R + ++ + E Sbjct: 176 EAFMTRADFTALNEARAEAGEEPFKNPRNTVAGSLKQLDPRLVAERPMQVILYEV-VGGE 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 FA+ +E+L ++R LG P + +A+++ + R+ LP+D+DGLV KV+ Sbjct: 235 RFAREHFEVLARLRELGLPTSEHNSRADSWAALKREVAAWAERRAELPFDVDGLVIKVNS 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F + LG ++ PRW I++KF +Q +T + D+++ +GRTG +TPVA L PV + G + Sbjct: 295 FDQRDALGTTSKFPRWAIAYKFPAQQVTTVIEDLEVNVGRTGAVTPVAMLTPVEVSGTTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 A+LHN D I+ L K DRVL+++AGE+IP+V+ ++ ER + Q F Sbjct: 355 QRASLHNWDQIERLGIGPK-----------DRVLLEKAGEIIPQVIAVV--ERASE-QVF 400 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 PS CP C ++++ G++ A C LAC Q L L+ F R NI+GLG+ Sbjct: 401 PRPSTCPSCGHGLIQE----PGRV--ALLCPNRLACPRQLLASLEFFAGRGQMNIDGLGE 454 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN- 547 + D + AD+F L + + + FG+ S NL D+I + R+ Sbjct: 455 KVAQALL---DTGLVSNV-ADLFALSKEDLLTLER------FGEQSAQNLVDAIARARDS 504 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYY 574 + R + +LG+ H+G AR++A +Y Sbjct: 505 ATFSRLLAALGVAHIGGVAARAIAAHY 531 >gi|253680829|ref|ZP_04861632.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873] gi|253562678|gb|EES92124.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873] Length = 664 Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 215/717 (29%), Positives = 368/717 (51%), Gaps = 74/717 (10%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L E++ YY P + D +YD + +L + E G Sbjct: 1 MEVKKQKIYKLVDELNKLAYEYYVLDNPSVADKDYD----------KKYDELVQLEKETG 50 Query: 74 ------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLR----KFITRIYRFWQKKDD 123 P ++G + K TH SL K ++E+++ K I I + +D Sbjct: 51 MLLSYSPTQRVGDVVLGKFEKYTHKGKLWSLGKAQSLEEVKDWHNKNIKAINEYNLNHED 110 Query: 124 N--SIFFTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 I + + K DG I Y G V AA RG G GED++ + I T+P L +N Sbjct: 111 KLPPIKYIITKKFDGLTINCTYNNDGILVAAATRGTGEIGEDITLQAKTIKTLP--LKIN 168 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFF 239 +IEV GE ++K F N V P N RN A+G LR LN + R L+ F Sbjct: 169 NNALIEVHGEAIMTKEAFQEYN----KVADVPLKNLRNGAAGALRNLNVRETARRNLSAF 224 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + +G K EML+ ++ G P+++ V+ +T I ++ IR L YDI Sbjct: 225 FYDVGYNEGTPFKTYSEMLKFIKEQGIPMDDYVKPCSTVEEIEKEIKYIEKIRDNLNYDI 284 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V +D+ ++ +G + P+W +++KF ++A+T+L+D++ +GR+G +TP A LE Sbjct: 285 DGIVIAIDDMKTREVIGYTVKFPKWALAYKFEAQEATTKLIDVEWNVGRSGRVTPTAILE 344 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV IGG + ATL+N D I R G +++G V ++R+ +VIP+++ ++ N Sbjct: 345 PVEIGGVTVKRATLNNMDDIS---------RKG--VKLGSVVFLRRSNDVIPEIMGVVEN 393 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + + P CP C S VV++ + C L+C Q ++ + HF SR+ Sbjct: 394 SLE-NTREIKAPEICPYCGSEVVQE--------GVHYFCENTLSCKPQLVKSIVHFGSRE 444 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NI G ++ + F+ D I+ D++ +++ + + N+ FG+ NL Sbjct: 445 AMNIAGFSEKTAEQLFEELD----IKSIPDLYRIKKEE------LLNLQRFGEKKAQNLI 494 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 D+I K +N L FI++LGI +VG + + L + + + Q++ + H+ LI Sbjct: 495 DAIEKSKNCDLPSFIYALGIPNVGKKTSIDLCRKFKTL----QKLKSATFHD------LI 544 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIEN-KKLVFTGT 657 + +G+I+A++I+EF+++ + ++ LL+ V+P E+N+ I N K +V TG+ Sbjct: 545 AIEDIGEIVAESIIEFFKDDTILKNIDELLELGVNPKF--QEENIQENIFNGKTVVVTGS 602 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 L R + +E + LGA V++ +S+KTD +IVG +PGSK +KA +L VKI++EE+F Sbjct: 603 LNSFSRSEIKEKLQSLGAKVASSVSKKTDYVIVGKDPGSKYKKAVELNVKIIDEEKF 659 >gi|225552370|ref|ZP_03773310.1| DNA ligase, NAD-dependent [Borrelia sp. SV1] gi|225371368|gb|EEH00798.1| DNA ligase, NAD-dependent [Borrelia sp. SV1] Length = 660 Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 210/707 (29%), Positives = 357/707 (50%), Gaps = 67/707 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I D YY S P + D YD R + + +P+ + P Sbjct: 4 KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELENKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ +R I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +FL +N + KPY N RN ASGILRR++ ++ + LN F++ F Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRIDSREVANFPLNIFIYDFLNAGLEFKTND 228 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +++ LGF VN +R Q N+ +++Y ++ R + Y+IDG+V KV +F+L Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDQKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA IT+A Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI + + VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYIASI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C+ VV++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKMAVVKE---------GAHFFCPNNKCPSVAVERIKYFCSKNCMDIEGFSDKII 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T K+ GF D + NL +SI + Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKQKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G R L +L+ N ++ + + + +L+++ +G+ IA Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRDFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+E + + + +E ++EV G ++ + KK TGT R Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVEIDGENK-----FLAGKKFCITGTFNGYSRSI 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFE 653 >gi|309805867|ref|ZP_07699902.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 03V1-b] gi|308167776|gb|EFO69920.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 03V1-b] Length = 567 Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 198/601 (32%), Positives = 323/601 (53%), Gaps = 62/601 (10%) Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + +E KIDG +++ Y+ GK V A+ RG+GH GEDV+A I IP+ L I IEV Sbjct: 8 YNVELKIDGLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKID--IEV 65 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245 RGE Y+ K F LN E G +ANPRNAA+G LR+L+ ++T R L+ F++ Sbjct: 66 RGECYMDKATFAKLNFERDDQGLAIFANPRNAAAGSLRQLD-ANVTKKRQLSTFIYTWVN 124 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 E Q++ + M LGF N + ++ + + + ++ + RS L Y IDG+V K Sbjct: 125 PPETIT-SQHQAILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLK 183 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ +LQ +LG + PRW I++KF ++ T + +I +GRTG++TP A ++PVN+ G Sbjct: 184 VDDLALQAKLGNTVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAG 243 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++ A LHN D ++ +DIR+GD VL+ +AG++IP++ +++N+R + Sbjct: 244 TVVSRAVLHNPDLLR-----------QKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQAS 292 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ P CP C +V K A RC + C AQ E + HF SR A NI G Sbjct: 293 LPYEIPKICPSCNQNLVH------LKDEVALRCINPM-CPAQVEEGITHFASRQAMNIVG 345 Query: 486 LGKQ---QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 LG + QL D AD++ L S ++ + F D S+ NL ++I Sbjct: 346 LGPKIVRQLIALHLVND-------IADLYFL------SAAQLAKLDHFKDKSIQNLLNAI 392 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + S+E +F LGI HVGA+ AR +A+ + ++N I + D L+++ Sbjct: 393 ENSKQNSVELLLFGLGIDHVGAKAARLIAQKF-------HDLNTIRECSIAD---LMQID 442 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------IGRHEKNVSSE--IENKKLVF 654 +G IA+++V++++ +V+AL+ ++ + +G + + + K +V Sbjct: 443 TIGQAIAESMVKYFEQQ----SVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKEKNVVL 498 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG L R + +T LGA V + +S+ TD +I GD GSK +AQQL + ++ E++ Sbjct: 499 TGKLAHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTEDEV 558 Query: 715 L 715 + Sbjct: 559 I 559 >gi|28211984|ref|NP_782928.1| NAD-dependent DNA ligase LigA [Clostridium tetani E88] gi|75541732|sp|Q891I0|DNLJ_CLOTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28204427|gb|AAO36865.1| NAD-dependent DNA ligase [Clostridium tetani E88] Length = 668 Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 207/716 (28%), Positives = 363/716 (50%), Gaps = 73/716 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG- 73 E+ ++ + L +E++ + YY P + D EYD KR + +L E G Sbjct: 5 EEKKRRIHELIEELNKYAYEYYVLDNPTVSDKEYD--KR--------YDELVNLEKETGF 54 Query: 74 -----PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR---IYRFWQKKDDNS 125 P ++G + K TH SL+K NIE L+++I R I + + ++ + Sbjct: 55 VLSYSPTQRVGDTVLTQFDKYTHKSRLWSLDKAQNIEQLKEWINRNEKIIMEYNRLNEET 114 Query: 126 I---FFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 + + L K DG + Y E G V A RG G GED+++ ++ I +P ++ N Sbjct: 115 LPMPTYILTKKFDGLTVNCTYDESGILVKGATRGTGIIGEDITSQVKTIKCLPLRIANN- 173 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFV 240 +IEVRGE ++K F N++ P N RN A+G LR L+ + R L+ F Sbjct: 174 -NLIEVRGEAIMTKEAFDKYNEK----AEIPLKNLRNGAAGALRNLDVRETAKRNLSAFF 228 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + +G + K EM+ + +GFPV+ +++ I ++ IR+ L YDID Sbjct: 229 YDIGYSEGNEFKTYMEMIGFLISMGFPVDPYIKECKDIVEIKDEIKYIEDIRNELNYDID 288 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V ++ ++ LG + PRW I++KF ++A+T+L+D++ +GR+G +TP A LE Sbjct: 289 GIVIAINHIKTREVLGYTVKFPRWAIAYKFEAEEATTKLIDVEWNVGRSGRVTPTALLES 348 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GGA I ATL+N D ++R + +R+G V ++R+ +VIP+++ +V Sbjct: 349 VELGGATIKRATLNNMD---------DIIR--KKVRLGAEVFIRRSNDVIPEIMG-VVES 396 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRD 479 + + P CP C+S+++ + H C L+C Q ++ L HF SR+ Sbjct: 397 SLENTEEIKAPLKCPYCESKLINE---------GVHLFCENTLSCKPQLVKSLVHFASRE 447 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NIEG ++ + F++ +I+ D++ +++ + K F + N+ Sbjct: 448 AMNIEGFSEKTAEQFYEE----LNIKSIGDLYRVKKEDLLTLDK------FKEKKADNIM 497 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 ++I + L FI++L I +VG + AR L K + + N N L Sbjct: 498 NAIENSKKPKLSSFIYALSIPNVGVKTARDLVKSFKTLDNIK----------NATIEELT 547 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTL 658 V +G+I+A +++EF++ +++ LL+ V+P + E ++ K +V TGTL Sbjct: 548 SVKDIGEIVANSVIEFFKQENINESIKELLELGVTPIMDITEIKKDNKFNGKTIVVTGTL 607 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + R++ +E + LGA VS +S+KTD ++ G+ GSK KA +LG++I+ EE+F Sbjct: 608 EGYTRNEIKEKLEALGAKVSGSVSKKTDFVLAGEEAGSKYNKAMELGIRIITEEEF 663 >gi|254229732|ref|ZP_04923141.1| DNA ligase, NAD-dependent [Vibrio sp. Ex25] gi|151937777|gb|EDN56626.1| DNA ligase, NAD-dependent [Vibrio sp. Ex25] Length = 407 Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 168/439 (38%), Positives = 259/439 (58%), Gaps = 41/439 (9%) Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 +YY ++ R LPY+IDG+V K+D+ ++Q++LG AR+PRW I++KF ++ T L ++ Sbjct: 6 AYYQDILQRRDALPYEIDGVVIKIDDIAVQERLGFVARAPRWAIAYKFPAQEEMTTLNEV 65 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 + Q+GRTG +TPVA+LEPV +GG ++NATLHN D I+ L +++GD V+ Sbjct: 66 EFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERL-----------QVKIGDHVV 114 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 ++RAG+VIP+VV +I R A+ FP+ CP+C S V R A RCTGGL Sbjct: 115 IRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIEGE------AVTRCTGGL 168 Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522 C AQ+ + LKHFVSR A +++GLG + ++ E ++ PAD+F L + Sbjct: 169 VCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDRE----MVKTPADLFKL-------SA 217 Query: 523 KIENILG-FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 I +L G S N+ +++ K + +L RF++SLGIR VG A +LA ++ + + Sbjct: 218 GILTVLDRMGPKSAQNIVNALEKSKETTLPRFLYSLGIREVGEATAANLAMHFKTLE--- 274 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRH 639 A N + LI V +G ++AQ I F+ +N V+ LL++ P I Sbjct: 275 -------AIQNANEEQLIEVQDIGAVVAQHITTFFSEEQNQAVVKDLLEQGIHWPEINTT 327 Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 E+ +E K +V TGTL ++ R +A+E + LGA V+ +S+KTDI+ G+N GSKL Sbjct: 328 EQVGELPLEGKTVVLTGTLSQLGRTEAKEALQSLGAKVTGSVSKKTDILFAGENAGSKLA 387 Query: 700 KAQQLGVKIMNEEQFLFLL 718 KAQ+LG++I E+ L L+ Sbjct: 388 KAQELGIEIKTEQDLLELM 406 >gi|219685109|ref|ZP_03539929.1| DNA ligase, NAD-dependent [Borrelia garinii Far04] gi|219673205|gb|EED30224.1| DNA ligase, NAD-dependent [Borrelia garinii Far04] Length = 660 Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 211/704 (29%), Positives = 362/704 (51%), Gaps = 61/704 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E+ +L++ I D YY S P + D YD R + P+ + P Sbjct: 4 KIQQEIENLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESKHPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ + +V HS+P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ IR I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +F +N + KPY + RN ASG+LRR++ ++ + LN F++ +E+ K Sbjct: 173 ENFFKINKFL----EKPYTSSRNLASGMLRRVDSREVANFPLNIFIYDF-LNAELDFKTN 227 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + K++ LGF ++ +R Q ++ +++Y ++ R++ Y+IDG+V KV +F L Sbjct: 228 DLAIAKLKKLGFKIDPLIRFFDQKSSIKEVLNYIADITKQRNSFEYEIDGVVLKVSDFVL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA ITNA Sbjct: 288 REKLGYTLHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITNA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI + + VGD V V R G+VIP V++++N+ F FP Sbjct: 348 TLHNQDYIISI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKCSKGV--FKFP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ +V++ AH +C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKTVLVKE---------GAHFFCTNNSCPSVTVERIKYFCSKNCMDIEGFSDKTI 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T + K+ GF D V NL +SI + Sbjct: 445 SFLFEKK----FISSEIDLYTF------NFYKLLKFKGFKDRKVYNLINSIEASKRKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G R L +L+ N ++ + + + +L+++ +G+ IA Sbjct: 495 KLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRDFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I+E + + + E L ++ SI + N + KK TGT + R + Sbjct: 552 IIEAFNDSTMLNKFKFFENLGFKMEESILIDDDN--RLLAGKKFCITGTFKDYSRPIIID 609 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 + GA+ ++ D +IVG+ GSKLEKA L VKIM+ E Sbjct: 610 KLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFE 653 >gi|154174322|ref|YP_001408016.1| NAD-dependent DNA ligase LigA [Campylobacter curvus 525.92] gi|190359239|sp|A7GXS4|DNLJ_CAMC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|112803310|gb|EAU00654.1| DNA ligase, NAD-dependent [Campylobacter curvus 525.92] Length = 654 Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 218/687 (31%), Positives = 356/687 (51%), Gaps = 71/687 (10%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY PI D EYDAL A P + P +IGG ++ K H Sbjct: 26 AYYDDDAPIASDEEYDALYHEVLAYEQVNP---AQKSLFSPTTRIGGGVSEGFSKARH-- 80 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKK-DDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152 ++++W++ED+ + + W K+ + ++ F EPK DG + + YEKG V A Sbjct: 81 ----IKQMWSMEDIFSQLELVA--WLKRGEKQNLSFVAEPKFDGASLNLLYEKGMLVRAI 134 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG +GE+V+ R I +IP L+++ IE+RGEV I K DF A+N+E G Sbjct: 135 TRGDGITGEEVTQNARVIKSIP--LNISYDGRIEIRGEVVIKKADFDAINEERTRNGETL 192 Query: 213 YANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 +NPRNAA+G LR+L+ R L F G+G+ + AK E+++ +R LGF ++ Sbjct: 193 LSNPRNAAAGSLRQLDSAVTAKRKLLFIPWGVGEQNLGLAK-HSEVMKFVRDLGFYRDDF 251 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + + G+ YNE+ R +DG+V +VD+ + ++LG + P++M++ KF Sbjct: 252 FKILDA-DGLAGAYNELLKQRDEKDVMMDGMVIRVDDLARCEELGYTVKFPKFMVAFKFP 310 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRLLD+ +Q+GR+G++TPV L+ V I GA + +ATLHN D I+ L VM+ Sbjct: 311 AIEKTTRLLDVALQVGRSGVVTPVGVLDEVVIDGARVKSATLHNFDEIERLG----VMK- 365 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D + + R+G+VIPK+ + R P P FCP C S ++ + G Sbjct: 366 ------NDLISIIRSGDVIPKITSVFKERRDGTQTPIIRPKFCPECGSHLLDE-----GV 414 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 + +C L C A+ + + H+ S+ NI+GLG+ ++ + + R+ DI+ Sbjct: 415 FI---KCQ-NLNCRARVINSIIHYASKKCLNIDGLGEAIINLLY---EKGLISRV-IDIY 466 Query: 512 TLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 +L K E+++ GF D NL D+I + SL RFI LG H+G A+ Sbjct: 467 SL---------KFEDLMALEGFKDKKAQNLLDAIEASKGASLARFITGLGCEHIGEVAAK 517 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ-NPRNICAVEA 627 +A QNF + D+ + + G+ +A ++++F + N I A+++ Sbjct: 518 KIA------QNFGE------GWLEADFDEVKNLEGFGEEMANSLMDFIEVNKDEILALQS 565 Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 + V PS R + ++ K +V TGTL + R + + + GA V +S+KTD Sbjct: 566 I---VRPSFERKQITQNA-FSGKSVVITGTLSR-PRDEIKAELEGYGAKVVGSVSKKTDF 620 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQF 714 ++ G N GSKL+KA +LGV++++E +F Sbjct: 621 VLAGSNAGSKLQKAVELGVRVIDEGEF 647 >gi|224531714|ref|ZP_03672346.1| DNA ligase, NAD-dependent [Borrelia valaisiana VS116] gi|224511179|gb|EEF81585.1| DNA ligase, NAD-dependent [Borrelia valaisiana VS116] Length = 660 Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 212/708 (29%), Positives = 357/708 (50%), Gaps = 69/708 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I D YY S P + D YD R + +P+ + P Sbjct: 4 KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFIYDKHILRLQELESKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPKI 134 K G ++ +V HS+P LSL+K++++ L+ +I +I D N F ++EPKI Sbjct: 62 -KFGSDLLNDFEEVEHSVPILSLDKVYDLNLLKTWIDKI-------DFNDSFNISVEPKI 113 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + Y+ G A RG+G G DV+ ++ I IP L + ++ RGEVYI+ Sbjct: 114 DGCSIVLYYKGGILEKALTRGNGKFGNDVTKNVKTIRYIPLFLDEEVDLVL--RGEVYIT 171 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKG 253 K +F +N + KPY+N RN ASGILRR++ ++ + LN F++ F Sbjct: 172 KENFFKINKFL----EKPYSNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTN 227 Query: 254 QYEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +++ LGF VN +R Q ++ ++SY ++ R++ Y+IDG+V KV +FS Sbjct: 228 NLAT-ARLKKLGFKVNPLIRFFDQKSSIKEVLSYIADITKKRNSFEYEIDGVVLKVSDFS 286 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L+++LG + P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA ITN Sbjct: 287 LRERLGYTSHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITN 346 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+DYI + D+ VGD V V R G+VIP V++++N+ F Sbjct: 347 ATLHNQDYIMSI-----------DLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKI 392 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C++ +V++ AH C + +ER+K+F S++ +IEG + Sbjct: 393 PENCPACKTVLVKE---------GAHFFCTNNNCPSVVIERIKYFCSKNCMDIEGFSDKI 443 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F F E S I IF K+ GF V+NL +SI + Sbjct: 444 ISFLF--EKKFISSEIDLYIFNF--------CKLFEFKGFKGKRVSNLINSIEASKKKPF 493 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + + S+GI+ +G R L +L+ N ++ ++ + + +L+++ +G+ IA Sbjct: 494 SKLLLSMGIKELGENTIRLL---FLNNLNSFSKLFSLCQDKDFAFSTLLKIKGIGEKIAL 550 Query: 611 AIVEFYQNPRNICA------VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 I+E + + I +E ++E G S + +KK TGT R Sbjct: 551 NIIEAFNDSIMINKFKFFENLEFKMEECIVIDGE-----SRLLADKKFCITGTFDGYSRP 605 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 + + GA+ A +++ D ++ G+ GSKL+KA L +KIM+ E Sbjct: 606 IIIDKLKNKGAIFKACVTKDLDFLVAGEKAGSKLKKALNLNIKIMSFE 653 >gi|308189932|ref|YP_003922863.1| DNA ligase (NAD(+)) [Mycoplasma fermentans JER] gi|238809881|dbj|BAH69671.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624674|gb|ADN68979.1| DNA ligase (NAD(+)) [Mycoplasma fermentans JER] Length = 664 Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 220/715 (30%), Positives = 371/715 (51%), Gaps = 60/715 (8%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A++ +K++ L +++ + YYQ + P + D EYD + + + +P Sbjct: 4 AMNALDIKKKIIELSNKLNQWNKEYYQDNNPSVSDFEYDKALQELEQLEKKYPQFIYV-- 61 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 N P K+G + KV H P LSL K ++ ++ K++ I + +D N F++ Sbjct: 62 -NSPTQKLGSFADNKFKKVVHQKPMLSLSKAYDYSEIEKYVNNIEKLVPIEDIN---FSI 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 EPKIDG I++ Y G A RGDGH GEDV+ I I +IP++++ + +EVRGE Sbjct: 118 EPKIDGLSISLHYNHGFLNQALTRGDGHEGEDVTENIYQIASIPKIINYDAE--LEVRGE 175 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI 249 V++ K +F LN+ +I G KP++NPRNAASG LR+L+PT + R L F++ L + + Sbjct: 176 VFLPKAEFQRLNENLIKAGEKPFSNPRNAASGTLRQLDPTIVKNRQLASFLYELVEPQKH 235 Query: 250 FAKGQYEMLQKMRCLGFPVN--NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 Q + L+ + L P N + V + +S++ EMK+ L YD DGLV K++ Sbjct: 236 NITTQEQALEFFQKLNIPTNPYHKVVEVEELEEAISFFAEMKN---KLNYDADGLVIKLN 292 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++G+ A+ P+ I+ K+ + A + + DI +GRTG +T VA LEPV + + Sbjct: 293 NLTYWNKMGKTAKFPKHSIAFKYEVETAISTIKDIKTTVGRTGKITYVASLEPVELNQTI 352 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + ATLHN ++I+ L +I + D+V + +AGE+IPKV+ ++ + Sbjct: 353 VRAATLHNYNFIEDL-----------NININDQVQIVKAGEIIPKVLALV---KKQSKGV 398 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F CP C S V+ ++ + C C + + HF SR + NI GLG Sbjct: 399 FGKTLECPSCGS-VLVEIEDNVDQF-----CVNK-NCPEMTINAIYHFASRKSLNIVGLG 451 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + F+K ++ DIF L + + K+E + ++ V NL +I K ++ Sbjct: 452 LITVKDFYKHN----LVKSIEDIFNLHKHKD-ELLKLER---YAELKVNNLLTNIGKAKD 503 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + + +F+LGI+HVG A+ ++K Y ++ E D+ + + +G Sbjct: 504 STFSKVLFALGIKHVGERAAKLISKQYHNFDELICE--------KDELAKISAINNIGPK 555 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK--NVSSE-IENKKLVFTGTLQKIQRH 664 I ++ E+ +N N+ LL++ I ++K V+SE + N V TG L + H Sbjct: 556 ILDSLKEYLKNEENV----KLLRKFD-EIFNYQKIATVASEKLINLSFVITGKLSNSRDH 610 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + V G VS+ +S KT ++VG++ GSKL+KA++L + I+NEEQF +L+ Sbjct: 611 YV-DLVEANGGKVSSSVSSKTSFLLVGEDAGSKLDKAKKLNIAIINEEQFNEMLK 664 >gi|319777211|ref|YP_004136862.1| DNA ligase [Mycoplasma fermentans M64] gi|318038286|gb|ADV34485.1| DNA ligase [Mycoplasma fermentans M64] Length = 660 Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 219/708 (30%), Positives = 368/708 (51%), Gaps = 60/708 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 +K++ L +++ + YYQ + P + D EYD + + + +P N P K Sbjct: 7 KKKIIELSNKLNQWNKEYYQDNNPSVSDFEYDKALQELEQLEKKYPQFIYV---NSPTQK 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + KV H P LSL K ++ ++ K++ I + +D N F++EPKIDG Sbjct: 64 LGSFADNKFKKVVHQKPMLSLSKAYDYSEIEKYVNNIEKLVPIEDIN---FSIEPKIDGL 120 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ Y G A RGDGH GEDV+ I I +IP++++ + +EVRGEV++ K + Sbjct: 121 SISLHYNHGFLNQALTRGDGHEGEDVTENIYQIASIPKIINYDAE--LEVRGEVFLPKAE 178 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYE 256 F LN+ +I G KP++NPRNAASG LR+L+PT + R L F++ L + + Q + Sbjct: 179 FQRLNENLIKAGEKPFSNPRNAASGTLRQLDPTIVKNRQLASFLYELVEPQKHNITTQEQ 238 Query: 257 MLQKMRCLGFPVN--NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 L+ + L P N + V + +S++ EMK+ L YD DGLV K++ + + Sbjct: 239 ALEFFQKLNIPTNPYHKVVEVEELEEAISFFAEMKN---KLNYDADGLVIKLNNLTYWNK 295 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +G+ A+ P+ I+ K+ + A + + DI +GRTG +T VA LEPV + ++ ATLH Sbjct: 296 MGKTAKFPKHSIAFKYEVETAISTIKDIKTTVGRTGKITYVASLEPVELNQTIVRAATLH 355 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N ++I+ L +I + D+V + +AGE+IPKV+ ++ + F C Sbjct: 356 NYNFIEDL-----------NININDQVQIVKAGEIIPKVLALV---KKQSKGVFGKTLEC 401 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S V+ ++ + C C + + HF SR + NI GLG + F Sbjct: 402 PSCGS-VLVEIEDNVDQF-----CVNK-NCPEMTINAIYHFASRKSLNIVGLGLITVKDF 454 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 +K ++ DIF L + + K+E + ++ V NL +I K ++ + + + Sbjct: 455 YKHN----LVKSIEDIFNLHKHKD-ELLKLER---YAELKVNNLLTNIGKAKDSTFSKVL 506 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGI+HVG A+ ++K Y ++ E D+ + + +G I ++ E Sbjct: 507 FALGIKHVGERAAKLISKQYHNFDELICE--------KDELAKISAINNIGPKILDSLKE 558 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEK--NVSSE-IENKKLVFTGTLQKIQRHKAQEYVT 671 + +N N+ LL++ I ++K V+SE + N V TG L + H + V Sbjct: 559 YLKNEENV----KLLRKFD-EIFNYQKIATVASEKLINLSFVITGKLSNSRDHYV-DLVE 612 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS+ +S KT ++VG++ GSKL+KA++L + I+NEEQF +L+ Sbjct: 613 ANGGKVSSSVSSKTSFLLVGEDAGSKLDKAKKLNIAIINEEQFNEMLK 660 >gi|290962622|ref|YP_003493804.1| DNA ligase [Streptomyces scabiei 87.22] gi|260652148|emb|CBG75280.1| putative DNA ligase [Streptomyces scabiei 87.22] Length = 704 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 215/712 (30%), Positives = 340/712 (47%), Gaps = 70/712 (9%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY + D YD L R A P+ E P G + GG + V H++ Sbjct: 37 AYYTGGTSALDDDTYDRLVRGIAVWEAAHPEQVLPESPTGKV--AGGAVE---GDVPHTV 91 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 LSL+ +++ E+ + + R + + F +EPK+DG + RY +G+ Sbjct: 92 AMLSLDNVFSAEEFTAWTASLAR---RIGHDVERFGVEPKLDGLAVAARYTRGRLTRLIT 148 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG +GEDVS I I +PR L+ P +EVRGEV ++ F N+ G +P+ Sbjct: 149 RGDGTAGEDVSHAIGTIEGLPRELAE--PVTVEVRGEVLMTTAQFEHANEVRTEHGGQPF 206 Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGL----GKTSEIFAK-GQYEMLQKM-RCLGFP 267 ANPRNAA+G LR T + FF +GL G ++ A+ G+ + M R G Sbjct: 207 ANPRNAAAGTLR-ARERAYTVPMTFFGYGLLALPGTDADSAARLGELAHSELMARAAGLG 265 Query: 268 VNN-------GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 VN GV A T ++ E+ +R+ LP+ IDG+V K D + Q+ G R Sbjct: 266 VNTTASTAVPGV-TAATVEEVLDRVKEIAGLRAELPFGIDGIVIKADLAADQRAAGSGTR 324 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PRW I++K + TRLL++ +GRTGI+ P LEPV I G+ IT ATLHN I Sbjct: 325 APRWAIAYKLPAVEKITRLLEVQWNVGRTGIIAPRGVLEPVEIDGSTITYATLHNPADIT 384 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 RD+R+GD V+V RAG+VIP+V + + R D QP FP CP C S Sbjct: 385 -----------RRDLRLGDHVMVHRAGDVIPRVEAPVAHLRTGDEQPIVFPEVCPRCGSG 433 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 + TG+ RC G C + L + V RD ++EGLG ++ + Sbjct: 434 I------DTGE--QRWRCENGRNC--HLVASLSYAVGRDQLDVEGLGHTRVVQLVE---- 479 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 A + AD+F L R Q S ++ G+ S NL +++ R L R + +LG+R Sbjct: 480 AGLVADLADLFALTREQLLSLDRM------GETSTDNLLAALDTARGRPLSRVLCALGVR 533 Query: 561 HVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDWLSLIR-----VPLVGDIIAQA 611 G ++R +A+++ + + A+ I + + S++ PL+ ++A Sbjct: 534 GTGRSMSRRIARHFATMDDIRAADAEAIQRVEGIGTEKAPSIVAELAELAPLIDKLVAAG 593 Query: 612 I--VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 + E P +E + G ++ + TG L+K+ R++ E Sbjct: 594 VNMTEPGATPPAPAGDPEGPEEGAEGAGGPLAGMAVVVTG---AMTGVLEKLSRNQMNEL 650 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + + G S+ +S+KT +++ G+N GSK +A+ LGV++ ++F L+ + Sbjct: 651 IERAGGRASSSVSKKTSLVVAGENAGSKRARAESLGVRLAGPDEFAALVADF 702 >gi|314923733|gb|EFS87564.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL001PA1] gi|315104373|gb|EFT76349.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA2] gi|327328187|gb|EGE69956.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL103PA1] Length = 740 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 222/746 (29%), Positives = 358/746 (47%), Gaps = 80/746 (10%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L Q I D YY P I D+EYD L + P+L P+ P + Sbjct: 21 RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G ++ F V H LSL+ ++ ++L ++I+R+ K + F E KIDG Sbjct: 78 VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 + + Y G+ V A RGDG GEDV+A +R I IP+ L+ + +P ++EVRGEV+ Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 DF LN ++ G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Q Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253 Query: 255 YEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K+ G PV+ V A+ V+ + E R + IDG+V KVD+ SL Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGES---RDEASHQIDGVVVKVDDVSL 310 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMA 370 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 371 TLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 420 DHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474 Query: 492 DFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS------ 520 E D + +P A +F LQ RR++ + Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPW 534 Query: 521 -------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 T + ++D + K ++ L R + +L IRHVG AR+LA + Sbjct: 535 QLEPYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + + +A V VG+IIA+++ +++ + + Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG I++E F +LL+ Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730 >gi|314966144|gb|EFT10243.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA2] Length = 740 Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 222/746 (29%), Positives = 358/746 (47%), Gaps = 80/746 (10%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L Q I D YY P I D+EYD L + P+L P+ P + Sbjct: 21 RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G ++ F V H LSL+ ++ ++L ++I+R+ K + F E KIDG Sbjct: 78 VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 + + Y G+ V A RGDG GEDV+A +R I IP+ L+ + +P ++EVRGEV+ Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 DF LN ++ G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Q Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253 Query: 255 YEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K+ G PV+ V A+ V+ + E R + IDG+V KVD+ SL Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGES---RGEASHQIDGVVVKVDDVSL 310 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMA 370 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 371 TLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 420 DHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474 Query: 492 DFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS------ 520 E D + +P A +F LQ RR++ + Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPW 534 Query: 521 -------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 T + ++D + K ++ L R + +L IRHVG AR+LA + Sbjct: 535 QLEPYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + + +A V VG+IIA+++ +++ + + Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG I++E F +LL+ Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730 >gi|308450080|ref|XP_003088175.1| hypothetical protein CRE_02776 [Caenorhabditis remanei] gi|308249279|gb|EFO93231.1| hypothetical protein CRE_02776 [Caenorhabditis remanei] Length = 1202 Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 230/811 (28%), Positives = 378/811 (46%), Gaps = 131/811 (16%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP+E E AR E L EI + YY + ++ D++YD L R +A+ AFP+LA Sbjct: 172 IPVE---FEAARVEAEQLTAEIERYRAAYYSEATSLVSDAQYDELFHRLEALERAFPELA 228 Query: 67 RSEDPNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P ++G + + F + H+ LSL+ ++++++ R++ + + + Sbjct: 229 GQDSPT---QEVGSAVASAGFPEHEHAERMLSLDNVFSLDEFREWAEKA----RASSGRA 281 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEI 184 + + E KIDG I + Y G A RGDG GED++ + IP IPRVL IPE Sbjct: 282 VRWLTELKIDGLAIALAYRNGVLETATTRGDGRVGEDITENVDLIPVIPRVLEGEGIPEF 341 Query: 185 IEVRGEVYISKNDFLALND--------------------EMIAVGRKPYANPRNAASGIL 224 E RGEV+++ +F ALN+ E I V +AN RN A+G L Sbjct: 342 FEARGEVFLTTENFEALNERQHALQAEFAADQLAKGVPAEKITVRFPEFANARNTAAGSL 401 Query: 225 RRLNPTDITR----------YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274 R+ R L+ +VHG+G Q + + + G PV+ R Sbjct: 402 RQRAEKKNERELELMRDRLGRLSLYVHGIGAWQHPDFANQSDAYELLSSWGLPVSPHSRV 461 Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334 ++ ++ + + + R ++IDG+V K+DE L ++LGE +R+PRW I++K+ ++ Sbjct: 462 LDSVDEVLEFIEDRGAHRHDFEHEIDGIVIKIDELELHRELGETSRAPRWAIAYKYPPEE 521 Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRD 394 T+LL I + +GRTG TP A +EPV + G+ ++ ATLHN+ +K + Sbjct: 522 VYTKLLAIRVGVGRTGRATPYAVMEPVKVAGSTVSQATLHNQQVVK-----------AKG 570 Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVA 454 + +GD V++++AG+VIP+V+ ++ R + P CP C + +R + K G + Sbjct: 571 VLIGDTVVLRKAGDVIPEVLGAVLERRDGSEVEWQMPVECPECGTE-LRAM--KEGDI-- 625 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF-SIRIPADIFTL 513 RC AC AQ R++H SR +IE LG+ + E P+ + A +F L Sbjct: 626 DLRCPNARACPAQVRGRVEHIGSRGGLDIEVLGEITAAALTQPEVPSVPPLETEAGLFDL 685 Query: 514 Q-----------RRQQTSTTKIENILG-------FGDVSV-----TNLYDSINKR----- 545 R +T I+ G F V+V D+ +R Sbjct: 686 TLEELVPITVVVRDSETGEPVIDEATGEPRRRSPFQRVTVEYPPEAEGMDATARRQAGFR 745 Query: 546 ----------------------RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 + L R I SL IRHVG AR+LA ++ S Sbjct: 746 KDHRVVRPSKDAETFLAELERAKTKPLWRLIVSLNIRHVGPVAARALADWFGS------- 798 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE----ALLKEVSPSIGRH 639 ++ I A + ++ L V VG IIA++++E+++ + VE A ++ +P H Sbjct: 799 LDAIRAASVEE---LSAVDGVGGIIAESLLEWFEVDWHREIVERWTAAGVQWTTPG---H 852 Query: 640 EKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 ++ E L V TG+L R A+E + Q G ++ +S+KTD + G Sbjct: 853 PGPGAAVAEGGVLAGLTVVATGSLDGFTRDGAKEAIIQAGGKAASSVSKKTDFVAAGPGA 912 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 GSKL KA++LG+ +++ QF L+ + L Sbjct: 913 GSKLAKAEELGIPVLDASQFAVLVSEGPAAL 943 >gi|314919398|gb|EFS83229.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA1] Length = 740 Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 223/748 (29%), Positives = 357/748 (47%), Gaps = 80/748 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR + L Q I D YY P I D+EYD L + P+L P+ P Sbjct: 19 EARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPT 75 Query: 76 NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G ++ F V H LSL+ ++ ++L +++ R+ K + F E KI Sbjct: 76 QRVGAPQRITDFAPVKHLERLLSLDNVFTRDELSEWMNRVATAVGKIPN----FLCELKI 131 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG + + Y G+ V A RGDG GEDV+A +R I IPR L+ + +P ++EVRGEV+ Sbjct: 132 DGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPRKLTGDDVPRLLEVRGEVFF 191 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 DF LN +I G+ P+A PRNAA+G LR+ + +R L+ VHG+G Sbjct: 192 PVADFTDLNAALIEAGKNPFATPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFP 251 Query: 253 GQYEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q K+ G PV+ V + H V+ + E R + IDG+V KVD+ Sbjct: 252 SQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRWGES---RDEASHQIDGVVVKVDDV 308 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 SLQ++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + Sbjct: 309 SLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVTVAGSTVE 368 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F Sbjct: 369 MATLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFL 417 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 418 MPDHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWE 472 Query: 490 QLDFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS---- 520 E D + +P A +F LQ RR++ + Sbjct: 473 AAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKVNGGPG 532 Query: 521 ---------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 T + ++D + K ++ L R + +L IRHVG AR+LA Sbjct: 533 PWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALA 592 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 ++ S + + +A V VG+IIA+++ +++ + + Sbjct: 593 THFGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAA 642 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG Sbjct: 643 GVRMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVG 702 Query: 692 DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +N GSK KA+ LG I++E F LL+ Sbjct: 703 ENAGSKETKARDLGRPILDEAGFRDLLE 730 >gi|282854737|ref|ZP_06264072.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139] gi|282582319|gb|EFB87701.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139] gi|314982008|gb|EFT26101.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA3] gi|315090823|gb|EFT62799.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA4] Length = 740 Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 222/746 (29%), Positives = 358/746 (47%), Gaps = 80/746 (10%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L Q I D YY P I D+EYD L + P+L P+ P + Sbjct: 21 RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G ++ F V H LSL+ ++ ++L ++I+R+ K + F E KIDG Sbjct: 78 VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 + + Y G+ V A RGDG GEDV+A +R I IP+ L+ + +P ++EVRGEV+ Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 DF LN ++ G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Q Sbjct: 194 ADFADLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253 Query: 255 YEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K+ G PV+ V A+ V+ + E R + IDG+V KVD+ SL Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGES---RDEASHQIDGVVVKVDDVSL 310 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMA 370 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 371 TLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 420 DHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474 Query: 492 DFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS------ 520 E D + +P A +F LQ RR++ + Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPW 534 Query: 521 -------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 T + ++D + K ++ L R + +L IRHVG AR+LA + Sbjct: 535 QLEPYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + + +A V VG+IIA+++ +++ + + Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG I++E F +LL+ Sbjct: 705 AGSKETKARDLGRPILDEAGFRYLLE 730 >gi|315606212|ref|ZP_07881239.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312100|gb|EFU60190.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 777 Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 272/492 (55%), Gaps = 33/492 (6%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 ++P+ + E RK L + I YY P I D++YD + R + I +P L Sbjct: 1 MVPMSDPTFETTRKRYDELVRSIEEARAAYYDRDSPTISDADYDRMYRELEEIEERYPQL 60 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 ++ P +GG ++ S +V H +SL+ ++++E+L + RI D Sbjct: 61 RGADSPT---MSVGGSVDSSFTEVRHLAQMMSLDDVFSLEELAGWEARISEATGIVDPP- 116 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 T E K+DG I + YE+G+ V AA RGDG+ GED++A R I +IP+ L+ +P I Sbjct: 117 --MTTEVKVDGLSINLLYEEGRLVRAATRGDGYVGEDITANARTIASIPQTLTGPVPRRI 174 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244 EVRGEVY DF A N+ +A G K + N RNAA+G LR+ +P + R L HG+G Sbjct: 175 EVRGEVYFPVADFAAFNEARVAAGEKAFVNARNAAAGSLRQKDPAETAKRPLAMVAHGIG 234 Query: 245 --KTSEIFA-----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + E FA +G YE L R G PV+ R I ++ + R +L + Sbjct: 235 FVEAGEGFAEPTTQQGWYEQL---RDWGLPVSPYTRLLTGRKAIEERIEQIGAQRHSLDH 291 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +IDG+V K+++ +LQ+ LG +R+PRW ++KF ++ TRLLDI +Q+GRTG +TP Sbjct: 292 EIDGVVVKINDLALQRSLGSTSRAPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGV 351 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 +E V + G+ ++ ATLHN + +V R G + +GD V++++AG+VIP++V + Sbjct: 352 MESVLVAGSNVSRATLHN---------AQEVARKG--VLIGDLVVLRKAGDVIPEIVAPV 400 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ++ R+ +PF PS CP C + +V++ K G + RC AC AQ ERL H + Sbjct: 401 MDARNGSERPFVMPSECPSCATPLVQE---KEGDV--DLRCPNKGACPAQITERLAHVGA 455 Query: 478 RDAFNIEGLGKQ 489 R A ++EGLG + Sbjct: 456 RSALDVEGLGDE 467 Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 15/205 (7%) Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 R QT +E G + ++K +N L R + +L IRHVG AR+LA + Sbjct: 579 RGQTVYEPVETSASKG---TEKMLAELDKAKNQPLARVLVALSIRHVGPTAARALADAFR 635 Query: 576 SYQNF-AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 S A + + A V VG+ I +++ +++ ++ +EA + Sbjct: 636 SMDALRAASLEELSA-----------VEGVGEEIGRSLRDWFTVDWHLAVLEAWARAGVR 684 Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 + VS + +V +G + R A+E +T G + +S+KT +++ G Sbjct: 685 MADEEREAVSDVLAGLTIVVSGAMPGYDREGAKEAITSRGGKAAGSVSKKTSLVVAGPGA 744 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LGV ++ E+QF LL+ Sbjct: 745 GSKAAKAEALGVPVITEQQFADLLE 769 >gi|32491184|ref|NP_871438.1| hypothetical protein WGLp435 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|81741654|sp|Q8D2B9|DNLJ_WIGBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|25166391|dbj|BAC24581.1| lig [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 591 Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 195/623 (31%), Positives = 329/623 (52%), Gaps = 56/623 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + + ++ +L ++I ++ YY + ++ D +YD+ + + + + N Sbjct: 9 KIKTKILNLRKKIEMWNNNYYVKNLSLVSDEKYDSTLFELNELEKKYSMFLNTSYSN--- 65 Query: 76 NKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYR--FWQKKDDNSIFFTLEP 132 KI + + FK + H LSLE I+N ++L F ++ + F+ +K ++ E Sbjct: 66 -KIVAKNICNKFKKIKHLSNMLSLESIFNYKNLLNFHEKVKKNLFYNEKR----YYCCEL 120 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRG 189 KIDG I + Y+ G A+ RGDG GEDV+ I +IP +L +L+ P+ IE+RG Sbjct: 121 KIDGLAINLIYKNGILDSASTRGDGLQGEDVTKNALEIKSIPHILKKNNLSFPKKIEIRG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247 EV+I + F +N + + +K ++N RN ASG LR++NP IT R L+F+ +G+G + Sbjct: 181 EVFIKLSTFNKINKMLKSKRKKLFSNARNMASGSLRQINP-KITKNRSLSFYGYGIGYVN 239 Query: 248 EI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E + Q++ L+ + G P+ + + + ++Y + IR L ++IDG+V KV Sbjct: 240 EKKYYYDQHDALKLINSWGIPIEKNTELCKSLNEVKNFYEKSIKIRDYLDFNIDGIVVKV 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + LQK+LG ++ PRW I++KF+ ++ T++L ++ +GRTG++TPVA+L+PV G Sbjct: 300 NSMKLQKKLGCSSKYPRWAIAYKFSSEEKCTKILGVNFNVGRTGVITPVAKLKPVYFMGT 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +I ++LHN+D I L I + D V +K++G+VIPK+ +I E+ + + Sbjct: 360 IIKYSSLHNKDIIDKL-----------GIMINDTVCLKKSGDVIPKISRVIF-EKRKNVK 407 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 FP C C+S++ L K CTGG C AQ+ + L HFVSR+A NI+G+ Sbjct: 408 EIIFPKTCIFCKSKIEFCLRKKN------LYCTGGFLCYAQRKQLLNHFVSREALNIKGM 461 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + + + I+ P+DIF L +T KI + G G S NL I K + Sbjct: 462 GNKIISQLIEKK----IIKYPSDIFKL------NTDKIIFLKGMGLKSSENLIKEIIKSK 511 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L R I+ +GI +VG + +LA YY + NF N + L + +G Sbjct: 512 TTELYRVIYGIGIPNVGIYTSMNLANYYKNISNFI----------NTSYEDLRSIKGIGS 561 Query: 607 IIAQAIVEFYQNPRNICAVEALL 629 + I +F ++ RNI + LL Sbjct: 562 FTSNCIKKFLKDKRNISIISDLL 584 >gi|315095035|gb|EFT67011.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL060PA1] Length = 740 Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 222/746 (29%), Positives = 358/746 (47%), Gaps = 80/746 (10%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R + L Q I D YY P I D+EYD L + P+L P+ P + Sbjct: 21 RHHWTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPEL---RTPDSPTQR 77 Query: 78 IGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G ++ F V H LSL+ ++ ++L ++I+R+ K + F E KIDG Sbjct: 78 VGAPQRVTDFAPVKHLERLLSLDNVFTRDELSEWISRVATAVGKIPN----FLCELKIDG 133 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 + + Y G+ V A RGDG GEDV+A +R I IP+ L+ + +P ++EVRGEV+ Sbjct: 134 LAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTIAAIPQKLTGDDVPRLLEVRGEVFFPV 193 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQ 254 DF LN ++ G+ P+ANPRNAA+G LR+ + +R L+ VHG+G Q Sbjct: 194 ADFTDLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLSMIVHGIGVLEGHDFPSQ 253 Query: 255 YEMLQKMRCLGFPVN---NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K+ G PV+ V A+ V+ + E R + IDG+V KVD+ SL Sbjct: 254 GHAYDKLAQWGLPVSPYFKIVEHADEVQEFVTRWGES---RDEASHQIDGVVVKVDDVSL 310 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++K+ ++ +T LLDI + +GRTG +TP + PV + G+ + A Sbjct: 311 QRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGRTGRVTPYGVMRPVAVAGSTVEMA 370 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN + +V R G + +GD V++++AG+VIP+++ +V R+ + F P Sbjct: 371 TLHN---------AFEVKRKG--VLIGDTVVLRKAGDVIPEILGPVVELRNGTEREFLMP 419 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C + + + N RC C +Q ER+ SR A +IE LG + Sbjct: 420 DHCPSCGAELAYEKNGDKDL-----RCPNAQGCPSQLHERVFGLASRGALDIEALGWEAA 474 Query: 492 DFFFKSE-----DPAFSIRIP----------ADIFTLQ----------RRQQTS------ 520 E D + +P A +F LQ RR++ + Sbjct: 475 IALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQPDDLAEVKVWRRRKVNGGPGPW 534 Query: 521 -------TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 T + ++D + K ++ L R + +L IRHVG AR+LA + Sbjct: 535 QLEPYFFTKATAKKPSAPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATH 594 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + S + + +A V VG+IIA+++ +++ + + Sbjct: 595 FGSVEAIREASVEELAG----------VDGVGEIIAESVKRWFEVDWHQEIISRWAAAGV 644 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 ++ +E +V TG+L+ R +A+E + G + +SRKTD ++VG+N Sbjct: 645 RMADDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGEN 704 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK KA+ LG I++E F +LL+ Sbjct: 705 AGSKEIKARDLGRPILDEAGFRYLLE 730 >gi|195941686|ref|ZP_03087068.1| DNA ligase (lig) [Borrelia burgdorferi 80a] gi|225549484|ref|ZP_03770450.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 118a] gi|225369761|gb|EEG99208.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 118a] Length = 660 Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 209/708 (29%), Positives = 356/708 (50%), Gaps = 67/708 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I D YY S P + D YD R + +P+ + P Sbjct: 4 KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ +R I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +FL +N + KPY N RN ASGILRR++ ++ + LN F++ F Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +++ LGF VN +R N+ +++Y ++ R + Y+IDG+V KV +F+L Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA IT+A Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI+ + + VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ VV++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T K+ GF D + NL +SI + Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G R L +L+ N ++ + + +L+++ +G+ IA Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+E + + + +E ++EV G ++ + KK TGT R Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654 >gi|218754780|ref|ZP_03533576.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis GM 1503] gi|289763195|ref|ZP_06522573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM 1503] gi|289710701|gb|EFD74717.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM 1503] Length = 690 Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 215/710 (30%), Positives = 346/710 (48%), Gaps = 52/710 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ +L +E+ H YY PII D+E+D L RR +A+ P+L P+ P + Sbjct: 15 RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 71 Query: 79 GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + F+ V H LSL+ + ++L + RI+ + ++ + E KIDG Sbjct: 72 GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIH----AEVGDAAHYLCELKIDGV 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 +++ Y +G+ A+ RGDG +GEDV+ R I +P L+ +PE++EVRGEV+ Sbjct: 128 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 187 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG Sbjct: 188 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 247 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ +R G PV+ A G+ + Y+ E R + ++IDG+V KVDE Sbjct: 248 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEV 304 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +LQ++LG +R+PRW I++K+ ++A T+LLDI + V + G + Sbjct: 305 ALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIPGERRPHRADHAVCVHDAGEGGRVDVG 364 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIR-VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 ATLHN + + +G D+R GD +R EV+ VV++ R + F Sbjct: 365 QATLHN---------ASRSAQGRADLRHRGDPQGRRRDPEVLGPVVEL----RDGSEREF 411 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C S + + K G A RC C Q ER+ H SR+ +IE LG Sbjct: 412 IMPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGY 466 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + +++ I ++F L R T G + L +++K + Sbjct: 467 EAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAA 522 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L R + +L IRHVG AR+LA + S ++ I A + D L V VG I Sbjct: 523 PLWRVLVALSIRHVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGPTI 572 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A A+ E++ + V+ + +++V + +V TG+L R A+E Sbjct: 573 AAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKE 632 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G + +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL Sbjct: 633 AIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 682 >gi|332755049|gb|EGJ85414.1| DNA ligase, NAD-dependent [Shigella flexneri 4343-70] Length = 421 Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 167/457 (36%), Positives = 271/457 (59%), Gaps = 42/457 (9%) Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 PV++ V + ++++Y++++ R TL +DIDG+V KV+ Q+QLG AR+PRW Sbjct: 1 MPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWA 60 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++NATLHN D I+ L Sbjct: 61 VAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERL--- 117 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 +R+GD+V+++RAG+VIP+VV+++++ER D + FP+ CP+C S D+ Sbjct: 118 --------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGS----DV 165 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 G+ VA RCTGGL C AQ+ E LKHFVSR A +++G+G + +D + E + Sbjct: 166 ERVEGEAVA--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKE----YVH 219 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 PAD+F L + K+ + G N+ +++ K + + RF+++LGIR VG Sbjct: 220 TPADLFKL------TAGKLTGLERMGPKLAQNVVNALEKAKETTFARFLYALGIREVGEA 273 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A LA Y+ + + A E +I L +VP VG ++A + F+ N + Sbjct: 274 TAAGLAAYFGTLE--ALEAASI--------EELQKVPDVGIVVASHVHNFFAEESNRNVI 323 Query: 626 EALLKE----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 LL E +P + E+ + S K +V TG+L ++ R A+ + +LGA V+ + Sbjct: 324 SELLAEGVHWPAPIVINAEE-IDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSV 382 Query: 682 SRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 383 SKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 419 >gi|313888253|ref|ZP_07821924.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845656|gb|EFR33046.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b] Length = 665 Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 211/700 (30%), Positives = 343/700 (49%), Gaps = 61/700 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KE+ +L +EI + YY P++ D+EYD L + + + P P ++ Sbjct: 6 KEMENLIKEIDKLNYHYYTLDDPLLSDAEYDKLYDKLVNLEKESGTVL----PYSPTTRV 61 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLEP 132 GG + K TH S++K E L + RI +F + N++ F +E Sbjct: 62 GGAVLSKFEKHTHLARLYSMDKAQGDEALLGWFNRIEKFVSDYNQNNVNKLPEPEFIVEL 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K DG I + YE V A+ RG+G GE++ ++ I ++P L ++ P IEV+GE Sbjct: 122 KFDGLTINLTYENQNLVMASTRGNGIIGEEILEQVKTIYSVP--LRISYPGKIEVQGEGL 179 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + ++ N E + N RNAA+G LR L+P R L F + +G E Sbjct: 180 MPLSELEKYNQE----NDEKLKNARNAAAGALRNLDPKVTKKRNLTAFFYNVGYIEEDMF 235 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 K ++ +R F V+ + F I E+ R+ L IDG+ KV++ Sbjct: 236 KSDDDIKNFLRENNFKVSKYNFKVKKFSDITQKIKEIGENRNKLDVLIDGVTIKVNDIET 295 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +K LG + PRW +++KF ++ ST LLD+ +GRT +TP A LEPV+IGG + A Sbjct: 296 RKALGYTNKFPRWAVAYKFEAEEISTTLLDVVWNVGRTAKVTPSAILEPVDIGGVTVQRA 355 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TL+N D ++R + +++G RVL++R+ +VIP+++ + ++ + + P Sbjct: 356 TLNNYD---------DILR--KKVKIGSRVLIRRSNDVIPEILGTLPSDN--ETREIEKP 402 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 CP C S + +D H C L+C Q + RL HF SRDA +IEG ++ Sbjct: 403 KTCPYCGSHLYQD---------GVHIFCPNTLSCVPQLVSRLTHFASRDAMDIEGFSEKT 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + ++ DI+ L+ I I GF + NL ++I + L Sbjct: 454 IEKLMAT----IGLKEIPDIYKLKYED------IIKIEGFKEKRTNNLLNAIENSKKPHL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 FI++LGI +VG + AR LA Y+ S+ N L+ + +G+I A+ Sbjct: 504 SNFIYALGIPNVGIKTARDLADYFKSFDKLK----------NSQEEELVSIGDIGNITAK 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 IVEF+ + R I AV+ L + + ++ V TGTL+ I R + +E + Sbjct: 554 EIVEFFHDDRIIGAVDELFDLGLKPVYEDDNKGPKPLDKNTFVLTGTLE-IPRKELEEKL 612 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 LGA V+ +S+ TD ++VG+NPGSK EKA+ L +KI++ Sbjct: 613 ISLGAKVTGSVSKNTDYVVVGENPGSKYEKARSLDIKILS 652 >gi|15594897|ref|NP_212686.1| NAD-dependent DNA ligase LigA [Borrelia burgdorferi B31] gi|7673988|sp|O51502|DNLJ_BORBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|2688477|gb|AAC66923.1| DNA ligase (lig) [Borrelia burgdorferi B31] Length = 660 Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 209/708 (29%), Positives = 356/708 (50%), Gaps = 67/708 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I D YY S P + D YD R + +P+ + P Sbjct: 4 KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ +R I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +FL +N + KPY N RN ASGILRR++ ++ + LN F++ F Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +++ LGF VN +R N+ +++Y ++ R + Y+IDG+V KV +F+L Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA IT+A Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI+ + + VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ VV++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T K+ GF D + NL +SI + Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G R L +L+ N ++ + + +L+++ +G+ IA Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+E + + + +E ++EV G ++ + KK TGT R Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E Sbjct: 607 IIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654 >gi|323359739|ref|YP_004226135.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037] gi|323276110|dbj|BAJ76255.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037] Length = 810 Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 235/816 (28%), Positives = 373/816 (45%), Gaps = 136/816 (16%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS++ AR E L Q I+ + YY ++ D+ YD R +A+ P+L + Sbjct: 10 LSLDDARAEAIDLTQRITDAREAYYGRDAELVDDATYDGWMHRLEALERRHPEL---QGQ 66 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +G L + H+ LSL+ +++ ++LR + + + ++ + E Sbjct: 67 DSPTLSVGAAEATDLATIEHAERMLSLDNVFSPDELRDWAVKT----EAAAGRAVHWLSE 122 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 KIDG I++RYE G AA RGDG GE V+ + +PR L P I+EVRGE Sbjct: 123 LKIDGLAISLRYENGVLTSAATRGDGRVGEIVTENALRLADVPRELGGEGHPPIVEVRGE 182 Query: 191 VYISKNDFLALN-------DEMIAVGRKPYA-------------------------NPRN 218 V+I F LN D +A R+ +A NPRN Sbjct: 183 VFIPVAKFENLNRLQGEYRDRAVAEARERHAGRRAGRPFDEEKAEQAAARRFPAFANPRN 242 Query: 219 AASGILRRL--NPTDIT--------RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 AASG LR+ T + L+ +VHG+G + Q E+ + G P Sbjct: 243 AASGGLRQQIDKKTGLELEAGLARIESLSLYVHGIGAWPDPPVAAQSEIYDLLASWGLPT 302 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 + R ++ G++S+ R + ++IDG+V KVDE +L +LG +R+PRW I++ Sbjct: 303 SPYSRVESSIDGVLSFVAHYGEHRHDVEHEIDGVVVKVDELALHDELGATSRAPRWAIAY 362 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 K+ +Q +T+LLDI + +GRTG TP A +EP + G+++ ATLHN+D +K Sbjct: 363 KYPPEQVNTKLLDIVVSVGRTGRATPFAVMEPAKVAGSVVRQATLHNQDVVK-------- 414 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP- 447 ++G + +GD V++++AG+VIP+V+ +V R + F P+ CP C + L P Sbjct: 415 VKG---VLIGDTVVLRKAGDVIPEVLGPVVELRDGTERAFVMPADCPECGT----PLRPA 467 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF-SIRI 506 K G + RC +C AQ R++H SR A +IE LG+ + E P + Sbjct: 468 KEGDI--DLRCPNARSCPAQVRGRVEHIGSRGALDIEALGEVTAAALTQPEVPERPPLDT 525 Query: 507 PADIFTLQ-----------RRQQTSTTKIENILG----------FGDVS----------- 534 A +F L R +T K++ G G S Sbjct: 526 EAGLFDLTVEQLVPIEVVVRDSETGERKVDPETGELVRRAPFQKLGPASYPPGAENLDPA 585 Query: 535 -------------------VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL 575 T L + K + L R + SL IRHVG AR+LA+++ Sbjct: 586 ERRRRGIRKDYREVLPSEQATKLVAELEKAKTKDLWRLLVSLNIRHVGPVAARALAQWFG 645 Query: 576 SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSP 634 S ++ I A ++ L V VG IIA A++++++ + VE + V Sbjct: 646 S-------LDAIRAATREE---LAAVEGVGGIIADAVIDWFEVDWHREIVETWSRAGVRF 695 Query: 635 SIGRHEKNVSSEIENK-----KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 SI H ++ +V TG+L R AQE + G ++ +S+KTD + Sbjct: 696 SIPGHPGPGAAAAAGGVLAGLTVVATGSLDGYTREGAQEAILAAGGKAASSVSKKTDFVA 755 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 G GSKL KA++LG++I++ QF L++Q L Sbjct: 756 AGPGAGSKLAKAEELGLRILDAAQFRILVEQGPGAL 791 >gi|4235382|gb|AAD13194.1| NAD-dependent DNA ligase [Thermus sp. SM32] Length = 481 Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 177/472 (37%), Positives = 268/472 (56%), Gaps = 37/472 (7%) Query: 106 DLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSA 165 DL+ F R+ R + + +T+E K+DG + + YE+G V+ A RGDG GE+V+ Sbjct: 8 DLKAFEDRVDRALGR--EGPFVYTVEHKVDGLSVNLYYEEGILVFGAPRGDGEVGEEVTQ 65 Query: 166 CIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR 225 + IPTIPR L +PE +EVRGEVY+ FL LN+E+ G K + NPRNAA+G LR Sbjct: 66 NLLTIPTIPRRLK-GVPERLEVRGEVYMPIEAFLRLNEELEEAGEKVFKNPRNAAAGSLR 124 Query: 226 RLNPTDITRY---LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV 282 + +P + F+ GLG E K QYE L + GFPV +G +A G+ Sbjct: 125 QKDPRITAKRGLRATFYALGLG-LEESGLKTQYEFLLWFKEKGFPVEHGFARATGAEGVE 183 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 Y R LP++ DG+V K+DE +L ++LG AR+PR+ I++KF ++ TRLLD+ Sbjct: 184 RVYQGWLQKRRKLPFEADGVVVKLDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDV 243 Query: 343 DIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVL 402 Q+GRTG +TPV LEPV I G+ ++ TLHNE YI+ L DIR+GD VL Sbjct: 244 VFQVGRTGRVTPVGILEPVLIEGSEVSRVTLHNESYIEEL-----------DIRIGDWVL 292 Query: 403 VKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGL 462 V +AG VIP+V+ ++ R +P +P CP C +V K GK+ HRC L Sbjct: 293 VHKAGGVIPEVLRVLKERRTGAERPIVWPENCPECGHHLV-----KEGKV---HRCPNPL 344 Query: 463 ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTT 522 C A++ E ++H+ SR A +I+GLG++ ++ ++ ++ AD++ L++ Sbjct: 345 -CPAKRFEAIRHYASRKAMDIQGLGEKLIEKLLEN----GLVKDVADLYRLRKEDLVGLE 399 Query: 523 KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 ++ G+ S NL I + ++ LER +++LG+ VG +AR+LA + Sbjct: 400 RM------GEKSAENLLRQIEESKHRGLERLLYALGLPGVGEVLARNLAARF 445 >gi|226320519|ref|ZP_03796084.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 29805] gi|226234083|gb|EEH32799.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 29805] Length = 660 Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 209/708 (29%), Positives = 356/708 (50%), Gaps = 67/708 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I D YY S P + D YD R + +P+ + P Sbjct: 4 RVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ +R I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +FL +N + KPY N RN ASGILRR++ ++ + LN F++ F Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +++ LGF VN +R N+ +++Y ++ R + Y+IDG+V KV +F+L Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA IT+A Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI+ + + VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ VV++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T K+ GF D + NL +SI + Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G R L +L+ N ++ + + +L+++ +G+ IA Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+E + + + +E ++EV G ++ + KK TGT R Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654 >gi|312149444|gb|ADQ29515.1| DNA ligase, NAD-dependent [Borrelia burgdorferi N40] Length = 660 Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 209/708 (29%), Positives = 355/708 (50%), Gaps = 67/708 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I D YY S P + D YD R + +P+ + P Sbjct: 4 KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ +R I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +FL +N + KPY N RN ASGILRR++ ++ + LN F++ F Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +++ LGF VN +R N+ +++Y ++ R + Y+IDG+V KV +F+L Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA IT+A Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI+ + + VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ VV++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T K+ GF D + NL +SI + Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G R L +L+ N ++ + + L+++ +G+ IA Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSILLKIKGIGEKIALN 551 Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+E + + + +E ++EV G ++ + KK TGT R Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654 >gi|47459030|ref|YP_015892.1| NAD(+)-dependent DNA ligase [Mycoplasma mobile 163K] gi|81614352|sp|Q6KI95|DNLJ_MYCMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|47458358|gb|AAT27681.1| NAD(+)-dependent DNA ligase [Mycoplasma mobile 163K] Length = 671 Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 226/708 (31%), Positives = 365/708 (51%), Gaps = 72/708 (10%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E + L+ +I+ + Y+ Y +P++ DS YDA + + + L S+ P IG Sbjct: 19 EYNDLKNKINLWNKAYFDYDEPLVEDSIYDATLLKLIKFENQYKFLDNSD---SPTKNIG 75 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT---LEPKIDG 136 +++ KV H P LSL K + +DL+ F I + FF LE KIDG Sbjct: 76 AKVSKKFSKVQHQFPMLSLNKAYKFDDLKIFERHINKLG--------FFPNYFLELKIDG 127 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I+++Y+ G + A RGDG SGEDV+ + I IP+ + + P IE+RGE+Y+SK+ Sbjct: 128 LSISLKYDNGNLIQALTRGDGISGEDVTENVFQIQDIPKQIKYSKP--IEIRGEIYLSKS 185 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK--TSEIFAKG 253 F +N+ + +ANPRNAASG LR+L+ + + R LN F + + +I Sbjct: 186 TFYEINECQKSQNLTIFANPRNAASGSLRQLDSSIVKERKLNSFFYSVTNPLDHKIKNFN 245 Query: 254 QYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E+ K P +N V + + + E + R L Y+IDG+V KVD+FSL Sbjct: 246 DQELFLKENNFQVPSLNKFVDTIEKAYEFIKDF-EKNNYREKLNYEIDGIVVKVDDFSLY 304 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 LG+ ++ PR MI+ KF++ T+L+DI I +GRTG +T A LEPV I G L++ AT Sbjct: 305 DILGQTSKFPRSMIAFKFSDISIETKLIDIFISVGRTGKITYNAILEPVIINGTLVSAAT 364 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN +Y++ L + D V + +AGE+IPKVV + + F Sbjct: 365 LHNYEYVESL-----------KLNKNDNVKIIKAGEIIPKVVSL---SKKNSETIFKRIE 410 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 +C C ++V+ P+ C C +L +++HF S+ A NI GLG Q ++ Sbjct: 411 YCTSCNEKLVQ---PEDE---VDQYCINK-KCLMIRLRKIEHFASKKAMNILGLGFQNIE 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 FFK + +D+F L++ + IE+ FG+ S NL +SIN+ ++ SLE+ Sbjct: 464 KFFK----LGILTKYSDLFFLEKYKNL----IESQPSFGEKSFNNLIESINRSKSNSLEK 515 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FIF++GI+ +G A+ +A N + ++N+I N D+ L + + ++ Sbjct: 516 FIFAIGIKQIGERSAKLIA-------NEVKLLSNLI---NFDFEKLNNIRDISCKTINSL 565 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQ 667 F+ + I ++ +G KN+ +E E+KKL V TGTL K R + Sbjct: 566 KCFFSDENEIEEIKI-----ILELGLDFKNLENEFESKKLQGLNFVITGTLSK-PRDFFK 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQF 714 E + + G V +S + + ++ G+ GSK+EKAQ++ +KI++E +F Sbjct: 620 ELIIKNGGNVLNSISNRINYLLTGEKSGSKIEKAQKINTIKILDENEF 667 >gi|219684330|ref|ZP_03539274.1| DNA ligase, NAD-dependent [Borrelia garinii PBr] gi|219672319|gb|EED29372.1| DNA ligase, NAD-dependent [Borrelia garinii PBr] Length = 660 Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 209/704 (29%), Positives = 361/704 (51%), Gaps = 61/704 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E+ L++ I D YY S P + D YD R + P+ + P Sbjct: 4 KIQQEIEDLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESTHPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ + +V HS+P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNNFEEVEHSVPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ IR I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +F +N + KPY + RN ASG+LRR++ ++ + LN F++ +E+ K Sbjct: 173 ENFFKINKFL----EKPYTSSRNLASGMLRRVDSREVASFPLNIFIYDF-LNAELEFKTN 227 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + K++ LGF ++ +R Q ++ +++Y ++ R++ Y+IDG+V KV +F L Sbjct: 228 DLAIAKLKKLGFKIDPLIRFFDQKSSIKEVLNYIADITKQRNSFEYEIDGVVLKVSDFVL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG P+W +++KF +++ I +Q+GR+G +TPVA ++ V + GA ITNA Sbjct: 288 REKLGYTLHHPKWAMAYKFEALSGFSKVNSIVVQVGRSGKITPVANIDKVFVSGAFITNA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI + + VGD V V R G+VIP V++++N+ F FP Sbjct: 348 TLHNQDYIISI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKCSKGV--FKFP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ +V++ AH +C + +ER+K+F S++ +I+G + + Sbjct: 394 DNCPACKTVLVKE---------GAHFFCTNNSCPSVTVERIKYFCSKNCMDIKGFSDKII 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T + K+ GF D V NL +SI + Sbjct: 445 SFLFEKK----FISSEIDLYTF------NFYKLLKFKGFKDRKVYNLINSIEASKRKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G R L +L+ N ++ + + + +L+++ +G+ IA Sbjct: 495 KLLLSIGIKELGENAIRLL---FLNNLNSFSKLFRLCQDRDFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I+E + + + E L ++ SI + N + KK TGT + R + Sbjct: 552 IIEAFNDSTMLNKFKFFENLGFKMEESILIDDDN--RLLAGKKFCITGTFKGYSRPIIID 609 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 + GA+ ++ D +IVG+ GSKLEKA L VKIM+ E Sbjct: 610 KLKNKGAIFKTCVTEGLDFLIVGEKAGSKLEKALNLNVKIMSFE 653 >gi|216264759|ref|ZP_03436751.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 156a] gi|223888694|ref|ZP_03623285.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 64b] gi|225548725|ref|ZP_03769772.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 94a] gi|215981232|gb|EEC22039.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 156a] gi|223885510|gb|EEF56609.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 64b] gi|225370755|gb|EEH00191.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 94a] Length = 660 Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 209/708 (29%), Positives = 355/708 (50%), Gaps = 67/708 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I D YY S P + D YD R + +P+ + P Sbjct: 4 KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ +R I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +FL +N + KPY N RN ASGILRR++ ++ + LN F++ F Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +++ LGF VN +R N+ +++Y ++ R + Y+IDG+V KV +F+L Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA IT+A Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI+ + + VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ VV++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I + A F K+ GF D + NL +SI + Sbjct: 445 SFLFEKKFIFSEIDLYAFDF----------YKLLEFKGFKDRKINNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G R L +L+ N ++ + + +L+++ +G+ IA Sbjct: 495 KLLLSMGIKDLGENTIRLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+E + + + +E ++EV G ++ + KK TGT R Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654 >gi|224532693|ref|ZP_03673310.1| DNA ligase, NAD-dependent [Borrelia burgdorferi WI91-23] gi|224512311|gb|EEF82695.1| DNA ligase, NAD-dependent [Borrelia burgdorferi WI91-23] Length = 660 Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 208/707 (29%), Positives = 355/707 (50%), Gaps = 67/707 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I D YY S P + D YD R + +P+ + P Sbjct: 4 KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ +R I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +FL +N + KPY N RN ASGILRR++ ++ + LN F++ F Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +++ LGF VN +R N+ +++Y ++ R + Y+IDG+V KV +F+L Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA IT+A Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI+ + + VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ VV++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKTAVVKE---------GAHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T K+ GF D + NL +SI + Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G L +L+ N ++ + + +L+++ +G+ IA Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+E + + + +E ++EV G ++ + KK TGT R Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFE 653 >gi|224533503|ref|ZP_03674092.1| DNA ligase, NAD-dependent [Borrelia burgdorferi CA-11.2a] gi|224513176|gb|EEF83538.1| DNA ligase, NAD-dependent [Borrelia burgdorferi CA-11.2a] Length = 660 Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 207/707 (29%), Positives = 358/707 (50%), Gaps = 67/707 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I D YY S P + D YD R + +P+ + P Sbjct: 4 KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ +R I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +FL +N + KPY N RN ASGILRR++ ++ + LN F++ F Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +++ LGF VN +R N+ +++Y ++ R + Y+IDG+V KV +F+L Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA IT+A Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI+ + + VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ VV++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKTAVVKE---------GAHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T K+ GF D + NL +SI + Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G L ++ ++ +F++ + + + +L+++ +G+ IA Sbjct: 495 KLLLSMGIKDLGENTIMLL--FFNNFNSFSK-LFKLCQDRYFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+E + + + +E ++EV G ++ + KK TGT R Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFE 653 >gi|253575959|ref|ZP_04853293.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str. D14] gi|251844753|gb|EES72767.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str. D14] Length = 672 Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 215/718 (29%), Positives = 351/718 (48%), Gaps = 69/718 (9%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI-AHAFPDLARSEDPNGPL 75 A + + L ++++ ++ YY +PII D EYD L A+ A L P+ P Sbjct: 3 AMQRMEQLVEQLNRYNYHYYTLDEPIISDKEYDQLYDELTALEAETGITL-----PDSPT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDNSIF----F 128 ++GGE+ H P SL+K N E L + R+ + + K+ + + Sbjct: 58 GRVGGELLEGFKPHRHLAPLWSLDKAQNEEQLLNWNNRVLKLIADYNSKNPTTPLPDPTY 117 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EII 185 +E K DG + + Y G+ V AA RG+G GE + ++ I ++P L IP I Sbjct: 118 VVELKFDGLTLNLTYTDGQLVQAATRGNGVVGEGILPQVKTIKSVP----LTIPYRDGTI 173 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 EV+GE I LA +E A +P N RNAA+G LR LNP T R LN F + +G Sbjct: 174 EVQGE-GIMNLSVLAKYNETAA---EPLKNARNAAAGALRNLNPRTTAERKLNAFFYNVG 229 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + + + EM+ ++ F VN V +F ++ +E+ R TL Y IDG V Sbjct: 230 YSDNLKFQDHREMMAFLKDNRFKVNPYVTYHASFDKVIGALHEIVEKRPTLDYLIDGAVI 289 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+ + ++ LG + PRW ++ KF ++ +T L + +GRTG +TP+A++EPV + Sbjct: 290 KITDMRTREVLGYTDKFPRWAVAFKFEAEETTTILESVSWNVGRTGKITPLAKVEPVELA 349 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + N TL+N G + R +G RV ++R+ +VIP+++ + +E P+ Sbjct: 350 GVTVQNCTLNN---------IGDIERKNLKYALGTRVFIRRSNDVIPEILGKVPDE--PE 398 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNI 483 +P CP C + + + AH C L C Q + R+ HF SRDA +I Sbjct: 399 GGEIIYPEVCPACGTPLEQR---------GAHLFCNNRLGCKPQIVARITHFASRDAMDI 449 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 E ++ + ++R PAD++TL K+E FG+ L +I Sbjct: 450 ETFSEKTAEQLHDE----LNLREPADLYTLTF---DDLIKLER---FGEKKANKLLQAIE 499 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + L F+F+LGI + G + LA ++ S + +++ ++ L +P Sbjct: 500 VSKGRDLASFLFALGIPNTGKSTTKVLADHFGS-------LEAVMSATTEE---LTALPD 549 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-EVSPS--IGRHEKNVSSEIENKKLVFTGTLQK 660 +G I+A +IV F+ +P + +L+ VSP + S K +V TGTL + Sbjct: 550 IGGIVADSIVNFFADPFYQAGIRKMLELGVSPKAPVKSAAPVTGSFFSGKTVVLTGTLHQ 609 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A E + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ ++ +E L L Sbjct: 610 MSRDEATERLEALGAKVTGSVSKKTDLVIAGEKAGSKLAKAQELGIPVIEDENELIRL 667 >gi|221218112|ref|ZP_03589578.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 72a] gi|221192060|gb|EEE18281.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 72a] Length = 660 Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 208/707 (29%), Positives = 355/707 (50%), Gaps = 67/707 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I D YY S P + D YD R + +P+ + P Sbjct: 4 KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ +R I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +FL +N + KPY N RN ASGILRR++ ++ + LN F++ F Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +++ LGF VN +R N+ +++Y ++ R + Y+IDG+V KV +F+L Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA IT+A Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI+ + + VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ VV++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKTAVVKE---------GAHFFCQNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T K+ GF D + NL +SI + Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G L +L+ N ++ + + +L+++ +G+ IA Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+E + + + +E ++EV G ++ + KK TGT R Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E Sbjct: 607 IIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFE 653 >gi|118444950|ref|YP_878905.1| NAD-dependent DNA ligase LigA [Clostridium novyi NT] gi|166215579|sp|A0Q2Q3|DNLJ_CLONN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118135406|gb|ABK62450.1| DNA ligase, NAD-dependent [Clostridium novyi NT] Length = 664 Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 203/655 (30%), Positives = 342/655 (52%), Gaps = 60/655 (9%) Query: 71 PNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLR----KFITRIYRFWQKKDDN- 124 P P ++G ++ LS F K TH SL K +++++ K + + + DD Sbjct: 54 PYSPTQRVG-DVVLSKFDKYTHKGKLWSLGKAQSLKEVEDWHNKNVKAVNEYNLTHDDKL 112 Query: 125 -SIFFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 I + + K DG I Y E G V AA RG G GE+++A + I TIP L ++ Sbjct: 113 PPIKYIITKKFDGLTINCTYNEDGILVTAATRGTGEIGEEITAQAKTIKTIP--LKIDND 170 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241 +IEV GE ++K F +E V P N RN A+G LR LN + R L+ F + Sbjct: 171 AVIEVHGEAIMTKEAF----EEYNKVAVVPLKNLRNGAAGALRNLNVKETARRNLSAFFY 226 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 +G K EML+ ++ G P+++ + +T I N ++ IR+ L YDIDG Sbjct: 227 DIGYNEGTPFKTYGEMLKFIKDHGIPMDDYAMECSTIEEIEKEINYIEEIRNKLNYDIDG 286 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 V VD+ ++ LG + P+W +++KF ++A+T+LL+++ +GR+G +TP A LEPV Sbjct: 287 AVIAVDDMKTRELLGYTVKFPKWALAYKFEAQEATTKLLEVEWNVGRSGRVTPTAILEPV 346 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 IGG + ATL+N D I+ R G +++G V ++R+ +VIP+++ +V E Sbjct: 347 EIGGVTVKRATLNNMDDIE---------RKG--VKLGSTVFLRRSNDVIPEIMG-VVEES 394 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 ++ P+ CP C S +V++ + C L+C Q ++ + HF SR+A Sbjct: 395 LEGSKDIEAPTTCPYCGSEIVQE--------GVHYFCENTLSCKPQLVKSIVHFGSREAM 446 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI G ++ + F+ I+ +D++ +++ + FG+ NL D+ Sbjct: 447 NIAGFSEKTAEQLFEE----LEIKSISDLYRIKKEDLLKLNR------FGEKKAQNLIDA 496 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I + L FI++LGI +VG + + L K + + N + + L+ V Sbjct: 497 IESSKECDLPSFIYALGIPNVGKKTSTDLCKKFKTLDNLKKA----------KFEELVSV 546 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIEN-KKLVFTGTLQ 659 +GDI+AQ++++F+ + + +++ LL V+P E+ + I N K +V TG+L Sbjct: 547 EDIGDIVAQSVLDFFNDETILKSIDELLSLGVTPKF--KEEEIKENIFNGKTVVVTGSLS 604 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R++ +E + LGA V+ +S+KTD ++VG +PGSK EKA QL +KI++EE F Sbjct: 605 SFSRNEIKEKLQSLGAKVAGSVSKKTDYVLVGKDPGSKYEKALQLNIKIISEEDF 659 >gi|312147884|gb|ADQ30543.1| DNA ligase, NAD-dependent [Borrelia burgdorferi JD1] Length = 660 Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 208/708 (29%), Positives = 355/708 (50%), Gaps = 67/708 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I D YY S P + D YD R + +P+ + P Sbjct: 4 RVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ +R I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +FL +N + KPY N RN ASGILRR++ ++ + LN F++ F Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +++ LGF VN +R N+ +++Y ++ R + Y+IDG+V KV +F+L Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA IT+A Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSGFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI+ + + VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ VV++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T K+ GF D + NL +SI + Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G L +L+ N ++ + + +L+++ +G+ IA Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+E + + + +E ++EV G ++ + KK TGT R Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654 >gi|226321858|ref|ZP_03797384.1| DNA ligase, NAD-dependent [Borrelia burgdorferi Bol26] gi|226233047|gb|EEH31800.1| DNA ligase, NAD-dependent [Borrelia burgdorferi Bol26] Length = 660 Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 208/708 (29%), Positives = 355/708 (50%), Gaps = 67/708 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I D YY S P + D YD R + +P+ + P Sbjct: 4 KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ +R I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +FL +N + KPY N RN ASGILRR++ ++ + LN F++ F Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +++ LGF VN +R N+ +++Y ++ R + Y+IDG+V KV +F+L Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADITKKRDSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA IT+A Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI+ + + VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ VV++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T K+ GF D + NL +SI + Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G L +L+ N ++ + + +L+++ +G+ IA Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+E + + + +E ++EV G ++ + KK TGT R Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654 >gi|237757130|ref|ZP_04585563.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium yellowstonense SS-5] gi|237690707|gb|EEP59882.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium yellowstonense SS-5] Length = 490 Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 176/483 (36%), Positives = 270/483 (55%), Gaps = 39/483 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ E+A+K + L + I +HD YY ++P+I D EYD L + I + +P+L P Sbjct: 25 LTKEEAKKIVEDLREVIRFHDWRYYILAQPVISDYEYDKLFKLLKDIENKYPELI---TP 81 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +I E+ +V H P LSL+ +N DLR F R+ + + +++E Sbjct: 82 DSPTQRIPSEITKVFPQVKHLTPMLSLDNSYNEADLRDFDRRVREL---TGLDKVEYSVE 138 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI----IEV 187 PK DG I++ YEK FV A RGDG GE+++ ++ I TIP LS + +E+ Sbjct: 139 PKFDGAGISLIYEKDLFVRGATRGDGEVGEEITNNLKVIKTIP--LSAKFSQYGIDKVEI 196 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 RGEV I K+ F +N+E + G +ANPRNAA+G +R +P+++ R L FV+ + Sbjct: 197 RGEVLIRKDLFKKMNEERLEEGLPLFANPRNAAAGSIRLQDPSEVAKRNLEAFVYHITYA 256 Query: 247 SE-------IFAKGQYEMLQKMRCLGFPVNNGVRQANT-FHGIVSYYNEMKSIRSTLPYD 298 + K + ++ + LGF V + ++ Y E + R T PY+ Sbjct: 257 EKDGKNLLGTVLKKHSDNIKMLHELGFKTPYPVMKVCIGIEEVIQYCEEWQRKRDTYPYE 316 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+V KV++ SL +LG + PRW I+ KF +QA+T+++++ Q+GRTG +TPVA+L Sbjct: 317 IDGMVIKVNDISLYDKLGFTSHHPRWAIAFKFKARQATTKIINVVFQVGRTGAITPVAKL 376 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV IGG ++++ +L NED+I+ +DIR+GD VLV+RAG+VIP VV +I Sbjct: 377 EPVEIGGVIVSSVSLINEDFIR-----------EKDIRIGDTVLVERAGDVIPYVVMVIK 425 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R + +P FP CP C S +V+ A +RC + C AQ +ERL HF S+ Sbjct: 426 EARTGNEKPIEFPKTCPSCGSPIVKPPGE------AVYRCV-NINCPAQVIERLIHFASK 478 Query: 479 DAF 481 DA Sbjct: 479 DAM 481 >gi|229819870|ref|YP_002881396.1| DNA ligase, NAD-dependent [Beutenbergia cavernae DSM 12333] gi|229565783|gb|ACQ79634.1| DNA ligase, NAD-dependent [Beutenbergia cavernae DSM 12333] Length = 782 Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 228/779 (29%), Positives = 365/779 (46%), Gaps = 110/779 (14%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A + L Q+++ YY P + D+ +DAL +A+ + P+L P+ P Sbjct: 23 EAAHRWAELAQQVNDARFAYYVKDAPTLSDAAFDALLHELEALEESHPEL---RVPDSPT 79 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + V H LSL+ ++ E + + R+ R + + E KID Sbjct: 80 QQVGGTFSTEFTAVEHVERMLSLDNAFSAEGVESWAQRVERDLDAAA-AGLHYLCELKID 138 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVRGEVY 192 G I + YE G+ V AA RGDG +GEDV+ +R I +IP VL + + P IE+RGEV+ Sbjct: 139 GLAIALLYEGGRLVRAATRGDGRTGEDVTLNVRTIASIPHVLGGDAASHPARIEIRGEVF 198 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG------- 244 + F ALN + G+ P+ANPRNAA+G LR+ +P R L + HG+G Sbjct: 199 LPVEAFEALNSSQVEAGKSPFANPRNAAAGSLRQKDPRVTARRALGMYAHGIGALDWGDA 258 Query: 245 -KTSEIFAKGQ-YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDI 299 + S I + Q YE+L G P + R + G+ ++YY E R + ++I Sbjct: 259 PEASSITRQSQVYELLSSW---GVPTSPHTRVVDDLAGVQEMIAYYGEH---RHDVEHEI 312 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KVDE +LQ++LG +R+PRW I++K+ ++ +TRLLDI + +GRTG +TP +E Sbjct: 313 DGVVVKVDEVALQRRLGATSRAPRWAIAYKYPPEEVNTRLLDIRVSVGRTGRVTPYGVME 372 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV- 418 PV + G+ + ATLHN +K R G + +GD V++++AG+VIP++V +V Sbjct: 373 PVVVAGSTVEAATLHNASEVK---------RKG--VLIGDTVVLRKAGDVIPEIVGPVVA 421 Query: 419 --NERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHF 475 R + + F P CP C + L P K G + RC +C AQ ER+ Sbjct: 422 LREGRESELREFVMPDVCPSCGT----PLAPAKEGDVDI--RCPNARSCPAQLSERVSAL 475 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF------------TLQRRQQTSTTK 523 R F+IE LG + DP + A ++ L RQ Sbjct: 476 GGRGGFDIEALGWEAATAL---TDPERGRPVDASVYRPGADLTAEAPAALPDRQAPVLAT 532 Query: 524 IENI--LGFGDVSVTNLYDSINKRRNISL----ERFIFSLGIRHVGA------------- 564 + L DV+ ++ I ++ + F F+ G V Sbjct: 533 EAGLFELTPDDVANVRVWREIKRKGEATGFWEDRPFFFTKGTAKVPPKPTQTTQVLFDQL 592 Query: 565 EIARSLAKYYL------------SYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 E+A++ + + + + AQ +I A + L VG IA A+ Sbjct: 593 ELAKTRPLWRVLVALSIRHVGPTAARALAQRFGSIDAIDAASEEELAAADGVGPTIAAAV 652 Query: 613 VEFYQNP-----------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 E+ +P R A + + +++V +E +V TG+L++ Sbjct: 653 KEWLGDPEAPDNWRREIVRRWAAAGVRMAD------ERDESVPRTLEGLTVVVTGSLERF 706 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R A+E V G + +S+ TD ++VG+N GSK KA++LG I++E F LL + Sbjct: 707 TRDGAKEAVLARGGKAAGSVSKSTDFVVVGENAGSKETKARELGRPILDEAGFERLLAE 765 >gi|325278944|ref|YP_004251486.1| DNA ligase [Odoribacter splanchnicus DSM 20712] gi|324310753|gb|ADY31306.1| DNA ligase [Odoribacter splanchnicus DSM 20712] Length = 829 Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 187/574 (32%), Positives = 301/574 (52%), Gaps = 49/574 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L + + YH+ YY + P I D E+D L + + +P++ DPN P ++G ++N Sbjct: 11 LRKALEYHNYKYYIENAPEISDREFDGLMHDLEKLEEKYPEMY---DPNSPTQRVGRDIN 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 +V H P LSL ++ E+LR F R+ +K + + + E K DGT I++ Y Sbjct: 68 QEFTQVAHKYPMLSLGNTYSEEELRDFDQRV----RKVVGDRVQYVCELKYDGTSISLTY 123 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 G+ A RGDG G+DV+A +R I T+P L + P E+RGE+ + + F LN Sbjct: 124 VNGELTQAVTRGDGVKGDDVTANVRTIRTVPLKLRGDYPPEFEIRGEILMPFSVFNRLNQ 183 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL-GKTSEIFAKGQYEMLQKM 261 E G +ANPRNAA+G L+ N + + R+L+ F++ + G+ + A+ Y L K Sbjct: 184 EKAEAGEPLFANPRNAAAGTLKLQNSSLVAKRHLDCFLYYIPGEVTP--AETHYGNLMKA 241 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 + GF + + A++F + ++ + R+ LP IDG+V KV++ +Q LG A+S Sbjct: 242 KEWGFHMPPYIHLADSFEEVWAFITKWDKERTGLPVPIDGIVIKVNDIGMQHLLGYTAKS 301 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++KF +Q T L+D+ Q+GRTG +TPVA LEPV+I G + A+LHN D I Sbjct: 302 PRWAIAYKFKAEQVETPLIDVVYQVGRTGAVTPVANLEPVHIAGTTVKRASLHNADIISS 361 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 L D+ D V V++ GE+IPK+V + +R A F + CP C +++ Sbjct: 362 L-----------DLHEHDTVYVEKGGEIIPKIVGVDRAKRREGAAAVEFITCCPECGTKL 410 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 +R A H C C Q +++HFVSR A NIEG+G++ ++ Sbjct: 411 IRIEGE------ANHYCPNEDHCPPQIAGKIEHFVSRKAMNIEGMGEETIELLLGKR--- 461 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI--FSLGI 559 IR ADI+ L K E ++G + +Y + +I L + I F +GI Sbjct: 462 -LIRDVADIYGL-------PAKREELIGLEKI----VYPESFEMTSIPLAKVIYGFEIGI 509 Query: 560 RHVGAEIARSLAKYYLSYQNFA----QEINNIIA 589 +++ + A +LA ++ S + +A QE++ +I Sbjct: 510 KNISSRNAETLAGHFGSLEAYAAASKQELSAVIG 543 Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 13/187 (6%) Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 SV NL I K + + +LGIR++G +R+LAK + +E+ ++ Sbjct: 655 SVDNLIAGIEKSKTAGFPALLNALGIRYIGETASRNLAKSF-------RELTRLM---EA 704 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKL 652 D+ L V +G+ +A +I+ ++ N V+ L+ V IG E S + + Sbjct: 705 DFEQLTEVEDIGEQMANSILRYFGKEENRQLVKRLIDYGVEAEIGETETGNDS-LTGQTF 763 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL + R +E + G VS +S KT ++ G+N GSKL+KA++LG +I++EE Sbjct: 764 VITGTLTR-PREYFKELILNAGGKVSDSVSAKTAYLLAGENAGSKLKKAEKLGTRIISEE 822 Query: 713 QFLFLLQ 719 +F LL+ Sbjct: 823 EFYELLK 829 >gi|4235376|gb|AAD13191.1| NAD-dependent DNA ligase [Thermus filiformis] Length = 546 Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 181/510 (35%), Positives = 279/510 (54%), Gaps = 44/510 (8%) Query: 72 NGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P ++G F+ V H SL+ + E++ F R+ R +K +T+ Sbjct: 1 DSPTEQVGARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLDRALGRK--RPFLYTV 58 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K+DG + + YE+G V+ A RGD IPTIPR L +P+ +EVRGE Sbjct: 59 EHKVDGLSVNLYYEEGVLVFGATRGDXXXXXXXXXXXXTIPTIPRRLK-GVPDRLEVRGE 117 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY---LNFFVHGLGKTS 247 VY+ FL LN+E+ G K + NPRNAA+G LR+ +P + F+ GLG Sbjct: 118 VYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLG-LE 176 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E K QYE+L ++ GFPV +G +A G+ Y R LP++ DG+V K+D Sbjct: 177 ESGLKSQYELLLWLKEKGFPVEHGYEKALGAEGVEEVYQAXXXKRHALPFEADGVVVKMD 236 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +L +LG AR+PR+ I++KF ++ TRLLD+D Q+GRTG +TPV LEPV + G+ Sbjct: 237 DLTLWGELGYTARAPRFAIAYKFPAEENETRLLDVDFQVGRTGRVTPVGILEPVFLEGSE 296 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ TLHNE YI+ L DIR+GD VLV +AG VIP+V+ ++ R + +P Sbjct: 297 VSRVTLHNESYIEEL-----------DIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERP 345 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 +P CP C R++ K GK+ HRC L C A++ E ++HF SR A +I+GLG Sbjct: 346 IRWPETCPECGHRLL-----KEGKV---HRCPNPL-CPAKRFEAIRHFPSRKAMDIQGLG 396 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINK 544 ++ ++ + ++ AD++ L++ E+++G G+ S NL I + Sbjct: 397 EKLIERLLEK----GLVKDVADLYRLRK---------EDLVGLERMGEKSAQNLLRQIEE 443 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYY 574 + LER +++LG+ VG +AR+LA + Sbjct: 444 SKRRGLERLLYALGLPGVGEVLARNLAARF 473 >gi|302337851|ref|YP_003803057.1| DNA ligase, NAD-dependent [Spirochaeta smaragdinae DSM 11293] gi|301635036|gb|ADK80463.1| DNA ligase, NAD-dependent [Spirochaeta smaragdinae DSM 11293] Length = 703 Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 222/741 (29%), Positives = 358/741 (48%), Gaps = 102/741 (13%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+A +E+ L + ++ YY KP + D+EYD L R + +P+L R + P Sbjct: 10 EKATEEVRRLADLLFRYNRAYYIEGKPEVSDTEYDRLFLRLQELEEQWPELKREDSPT-- 67 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G +++ +V H +P LSL+K +++E+L ++ R ++ + + F +E KI Sbjct: 68 -LRVGSDLSSDFPEVEHRVPVLSLDKAYSVEELLGWMGRT----SGREASGLSFVVEEKI 122 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + Y G A RG+G+ G DV+ +R I ++P L+ + I VRGE+Y+ Sbjct: 123 DGVSIVLYYRGGILERAVTRGNGYVGNDVTDNVRTIGSVPLRLTEAVD--IAVRGEIYLP 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-------PTDITRYLNFFVHGLGKTS 247 K F +LN +M + Y NPRN A+G LRR+ P I Y FF G Sbjct: 181 KASFESLNRKMGNL----YVNPRNLAAGTLRRVKSREVAEVPLTIFVYEGFFSDG----- 231 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGV------------------RQANTFHGIVSYYNEMK 289 K E+L+ ++ LGF N V Q+ T+ + Y Sbjct: 232 ---PKSHLEILEYLQSLGFRTNRRVGIFTNRTDLADFSRRHPDWQSGTWDELEGYVRTST 288 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 R +L Y+IDGLV K++E ++ +LG PRW I++KF ++ + IDIQ+GRT Sbjct: 289 EERGSLDYEIDGLVVKINELDVRDRLGYTGHHPRWAIAYKFESPTGTSIIKSIDIQVGRT 348 Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 G +TPVAR+EPV +GG+ I+N TLHN+DY+ L +I VGD+V + R G+V Sbjct: 349 GRITPVARVEPVFVGGSTISNVTLHNQDYVDML-----------EIAVGDQVSISRRGDV 397 Query: 410 IPKVVDIIVNERHPDAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 IP V +++ ++ P ++ P CP C S + + AH L+C Q Sbjct: 398 IPAVEEVVA--KNESGNPVWNMPLLCPSCGSSLQKK---------GAHTFCLNLSCPDQV 446 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 RL F++ +I+GLG + +D + F + PAD++ E +L Sbjct: 447 RGRLFFFIAAGQMDIDGLGPETVDLMIRE---GF-VSEPADLYRFD---------YERLL 493 Query: 529 ---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 GFG+ + + + K + S+GI +G ++ L + I Sbjct: 494 PYPGFGEKKIEAIRRGLEKSLTRPFHTVLASVGIPEMGKKVIELLISAGFRSM---KAIY 550 Query: 586 NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS 645 ++ N D +LI V +G+ I E AV + E++ E+ Sbjct: 551 ALVDQKNRD--ALIAVKGIGEKTVDTIFEELGRE----AVRKRINELAEVGLAMEEEEKL 604 Query: 646 EIENKKLVF-------TGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK 697 I +++L+F TG+ Q R KA E V++ G V + +S KT ++ G+ GSK Sbjct: 605 SIASEQLIFAGQSWCVTGSFQHFNPRGKAMELVSRFGGSVVSSVSGKTSHLLAGEGGGSK 664 Query: 698 LEKAQQLGVKIMNEEQFLFLL 718 L KA+ LGV++++EE+FL LL Sbjct: 665 LTKARSLGVEVLSEEEFLDLL 685 >gi|218249478|ref|YP_002375058.1| DNA ligase, NAD-dependent [Borrelia burgdorferi ZS7] gi|254781261|sp|B7J2B3|DNLJ_BORBZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218164666|gb|ACK74727.1| DNA ligase, NAD-dependent [Borrelia burgdorferi ZS7] Length = 660 Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 208/708 (29%), Positives = 355/708 (50%), Gaps = 67/708 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E++ L++ I D YY S P + D YD R + +P+ + P Sbjct: 4 KVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ +V HS P LSL+K+++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNDFKEVEHSAPILSLDKVYDLDLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ +R I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGVLEKALTRGNGKFGNDVTINVRTIRYIPLFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +FL +N + KPY N RN ASGILRR++ ++ + LN F++ F Sbjct: 173 ENFLKINKFL----EKPYTNSRNLASGILRRVDSREVANFPLNIFIYDFLNAGLEFKTND 228 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +++ LGF VN +R N+ +++Y ++ R + Y+IDG+V KV +F+L Sbjct: 229 LAT-ARLKKLGFKVNPLIRFFDLKNSIGEVLNYIADIIKKRDSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG A P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA IT+A Sbjct: 288 RERLGYTAHHPKWAMAYKFEALSDFSRVNSIVVQVGRSGKITPVANIDKVFVSGAFITSA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI+ + + VGD V V R G+VIP V++++N+ F P Sbjct: 348 TLHNQDYIRSI-----------GLNVGDVVKVSRRGDVIP-AVEMVINKFSTGF--FKVP 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C++ VV++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKTAVVKE---------GAHFFCPNNNCPSVAVERIKYFCSKNCMDIEGFSDKII 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F+ + I D++T K+ GF D + NL +SI + Sbjct: 445 SFLFEKK----FIFSEIDLYTFD------FYKLLEFKGFKDRKINNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G L +L+ N ++ + + +L+++ +G+ IA Sbjct: 495 KLLLSMGIKDLGENTIMLL---FLNNLNSFSKLFKLCQDRYFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNP------RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 I+E + + + +E ++EV G ++ + KK TGT R Sbjct: 552 IIEAFNDSVMLNKFKFFENLEFKMEEVVAIDGENKL-----LAGKKFCITGTFNGYSRSI 606 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 + + GA+ + ++ D +IVG+ GSKL+KA L +KIM+ E Sbjct: 607 VIDKLKNKGAIFNTCVTGSLDFLIVGEKAGSKLKKALSLNIKIMSFED 654 >gi|325479535|gb|EGC82631.1| DNA ligase (NAD+) [Anaerococcus prevotii ACS-065-V-Col13] Length = 669 Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 200/710 (28%), Positives = 352/710 (49%), Gaps = 58/710 (8%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E++ L +EI+ + YY +P++ D EYD + R D + + N P K Sbjct: 4 REEINQLIEEINRLNYHYYTLDEPLVSDGEYDEIYDRL----VKLEDKSGYINENSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR----FWQKKDDN--SIFFTLE 131 +GGE+ K H LS +K + L +I R R + DD + F +E Sbjct: 60 VGGEVLEKFEKHFHITKLLSQDKAQTYDKLEDWINRANRLRRDYNNSHDDQLEKLTFIME 119 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K DG + + Y+ G V AA RG+G GE++SA + I +IP+ + ++E++GE Sbjct: 120 YKFDGLTVNLTYDDGALVNAATRGNGTVGEEISAQVNTIKSIPK--RIEEKSLLEIQGEA 177 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 + ++ N+ N RNAA+G LR LNP + R L + + + T+ + Sbjct: 178 LMPLSELKKYNEN----NEVQLKNARNAAAGALRNLNPKETAKRNLTAYFYSI-PTNNLD 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K + EML+ ++ G + ++ N I++ +K R+TL DG+V K+++ Sbjct: 233 FKSEEEMLEFLKKQGLQTHPYHKKVNNLDDIIAELERIKEERTTLDILTDGVVIKINDKK 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ LG + PRW I++K+ ++ +T L ++ +GRTG +TP A LEPV+ G +T Sbjct: 293 TQEVLGTTNKFPRWSIAYKYEAEEFTTTLKEVVWNVGRTGKVTPSAILEPVDFSGVTVTR 352 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATL+N D ++R + +++G +V ++R+ +VIP+++ +V+E P Sbjct: 353 ATLNNYD---------DILR--KKVKIGSKVFIRRSNDVIPEILG-VVDEDQPGTLEIEK 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S ++ G + C ++C Q L +++HF SR+A +IEGL ++ Sbjct: 401 PKHCPYCGSELIE------GNVHII--CPNSISCKPQLLAKMEHFASRNAMDIEGLSEKT 452 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + A I DI+ L + + N+ FGD NL ++I + + L Sbjct: 453 ISQLM----DALDINEIDDIYDL------TYDMLINLDRFGDKKTNNLLNAIEASKKVDL 502 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 FI+++GI +VG +R LA + S+ Q L+ V +G+I AQ Sbjct: 503 NNFIYAIGIPNVGERTSRDLANKFKSFDRLRQAKEE----------ELVDVEDIGEITAQ 552 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I+E++ +P +++ LL++ E N S+ +E+ V TGT++ +R + + Sbjct: 553 NIIEYFNDPNIKRSIDILLEKGIEISNPKEDNKSNGLEDMTFVITGTIENYKRDDIKNLI 612 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + V+ +S+ TD ++ GD GSK +KA LG++I ++ L++ Sbjct: 613 EKNAGKVTGSVSKNTDYVLCGDKAGSKKDKALNLGIEIYEGDKLYEFLEK 662 >gi|224534829|ref|ZP_03675401.1| DNA ligase, NAD-dependent [Borrelia spielmanii A14S] gi|224514077|gb|EEF84399.1| DNA ligase, NAD-dependent [Borrelia spielmanii A14S] Length = 660 Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 210/704 (29%), Positives = 353/704 (50%), Gaps = 61/704 (8%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++E+++L++ I D YY S P + D YD R + +P+ + P Sbjct: 4 KIQQEIANLKKLIRKWDKEYYVDSLPSVEDFVYDEHILRLQELESKYPEYKTLDSPTL-- 61 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 K G ++ + +V HSIP LSL+K++++ L+ +I +I +NS ++EPKID Sbjct: 62 -KFGSDLLNTFKEVEHSIPILSLDKVYDLNLLKSWIDKI------DFNNSFNISVEPKID 114 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G I + Y+ G A RG+G G DV+ IR I IP L + ++ RGEVYI+K Sbjct: 115 GCSIVLYYKDGILEKALTRGNGKFGNDVTKNIRTIRHIPFFLDEKVDLVL--RGEVYITK 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 +F +N + KPY N RN ASGILRR++ ++ + LN F++ F Sbjct: 173 ENFFKINKFL----EKPYTNSRNLASGILRRVDSKEVANFPLNVFIYDFLNAGLEFKTNN 228 Query: 255 YEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +K++ LGF VN +R Q ++ +++Y ++ R++ Y+IDG+V KV +F+L Sbjct: 229 LAT-EKLKKLGFQVNPLIRFFDQKSSIKEVLNYIADITKKRNSFEYEIDGVVLKVSDFAL 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +++LG P+W +++KF +R+ I +Q+GR+G +TPVA ++ V + GA ITNA Sbjct: 288 RERLGYTLHHPKWAMAYKFESLSGLSRVNSIIVQVGRSGKITPVANIDKVFVSGAFITNA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN+DYI + ++ VGD V V R G+VIP V++++N+ F Sbjct: 348 TLHNQDYIMSI-----------NLNVGDIVKVSRRGDVIP-AVEMVINKFSTGF--FKIL 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C+ +V++ AH C + +ER+K+F S++ +IEG + + Sbjct: 394 DNCPACKMALVKE---------GAHFFCTNNNCPSVVVERIKYFCSKNCMDIEGFSDKTI 444 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F F E S I IF K+ GF + V NL +SI + Sbjct: 445 SFLF--EKKFISSEIDLYIFDFY--------KLLKFKGFKERKVNNLINSIEASKKKPFS 494 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + + S+GI+ +G R L +L+ N ++ + + + +L+++ +G+ IA Sbjct: 495 KLLLSIGIKELGENTIRLL---FLNNFNSFSKLFKLCQDRDFAFSTLLKIKGIGEKIALN 551 Query: 612 IVEFYQNPRNICA---VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 I+ + + I E L ++ + +KN + KK TG+ R + Sbjct: 552 IIGAFNDSIMINKFKFFENLGFKMEECVLIDDKN--KLLLGKKFCITGSFGDYSRSIVID 609 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 + GA+ ++R D +IVG G+KL+KA L +KIM+ E Sbjct: 610 KLENKGAIFQTCVTRSLDFLIVGKKAGTKLKKALNLNIKIMSFE 653 >gi|255023537|ref|ZP_05295523.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-208] Length = 419 Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 174/445 (39%), Positives = 250/445 (56%), Gaps = 33/445 (7%) Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 A RGDG GED++A +R I +IP L + IEVRGE ++ K F LN+ G+ Sbjct: 1 GATRGDGTIGEDITANLRTIRSIPMKLQKDYS--IEVRGEAFMPKRSFQKLNEIREEEGQ 58 Query: 211 KPYANPRNAASGILRRLNPTDI--TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 +ANPRNAA+G LR+L+ T I +R L+ F++ + E+ + L + LG V Sbjct: 59 MLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLETLGLKV 117 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 N R N+ + +Y +E R+ L YDIDG+V K++ Q+Q+G +SPRW I++ Sbjct: 118 NKERRLCNSLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGTTVKSPRWSIAY 177 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 KF ++ T+LLDI++ +GRTG++TP A LEPV + G ++ A+LHNED I Sbjct: 178 KFPAEEVPTKLLDIELNVGRTGVVTPTAVLEPVRVAGTTVSRASLHNEDLIT-------- 229 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 +DIR+GD VL+K+AG++IP+V+ I ER +PF P CP C S +VR L + Sbjct: 230 ---EKDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEKPFHMPKNCPTCDSELVR-LEEE 285 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 A RC C AQ E L HFVSR+A NI+GLG++ + F I+ A Sbjct: 286 V-----ALRCINP-KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQH----LIKDVA 335 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D+F L S K+ + G+ SVTNL SI + SLE+ +F LGIRHVGA+ A+ Sbjct: 336 DLFFL------SKEKLLELERMGEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAK 389 Query: 569 SLAKYYLSYQNFAQEINNIIAHNND 593 SLA ++ + N + ND Sbjct: 390 SLAIHFDTMDNLKVADKETLTSIND 414 >gi|15828860|ref|NP_326220.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Mycoplasma pulmonis UAB CTIP] gi|81532955|sp|Q98QH2|DNLJ_MYCPU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|14089803|emb|CAC13562.1| DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) [Mycoplasma pulmonis] Length = 679 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 210/701 (29%), Positives = 366/701 (52%), Gaps = 55/701 (7%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD----LARSEDPNGPLNKIG 79 L +++ ++ YY ++ ++ D YDA + I FP+ + + + L K+ Sbjct: 15 LNEKLKLYNHHYYNKNESLVSDEYYDAKLLELENIRDNFPEEYNQVFQKDFSKSVLEKVN 74 Query: 80 --GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 E ++ L K H LSL K ++ EDL ++ RI F N+ + L+ KIDG Sbjct: 75 HLDEQDVKLKKEKHQKLMLSLNKAYSFEDLERYTNRINTFV----GNNHQYILQEKIDGV 130 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I++ YE G A RGDG GE+V+ I IP+ ++NI E IE+RGE++ S Sbjct: 131 SISLYYENGILTKALTRGDGIYGENVTHNALNIKDIPK--TINIKENIELRGEIFFSLKL 188 Query: 198 FLALNDEMI----AVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 F +L +E + K + PRN ASGIL+ L TD + +L+ F++ + K Sbjct: 189 FESLKNEFLDKQDGTKNKKWNTPRNKASGILKSLKTTDESSWLSCFIYEVVSPENFNLKT 248 Query: 254 QYEMLQKMRCLGF--PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q ++ ++ GF P + N ++ + R Y+IDGLV K+++ SL Sbjct: 249 QKQLFDFLKIQGFNLPKFEFIENENLIENFITNFKFEDDQRD---YEIDGLVIKLNDLSL 305 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 LG+ ++ I++KF +K T++ DI + +GRTG++T A+L+ V + G+ I A Sbjct: 306 YDLLGKTSKFFHHSIAYKFRKKFVMTKIEDIFVTVGRTGLITYNAKLQEVVLNGSKIKAA 365 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN +YIK + I +GD+V +++AGE+IP+VV ++ + D FS Sbjct: 366 TLHNYEYIKNI-----------KINIGDKVYIEKAGEIIPRVVKLVSPKN--DQNYFSPI 412 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 FCP C++++ N + C C +++++LK+FVS+D I+ LG +++ Sbjct: 413 EFCPSCKNKLSWSEN------MLNQFCLNP-DCIEKKIQKLKYFVSKDGMEIQELGGKKI 465 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + FF ++ DI+ L + K+EN F + SV L I + +++ Sbjct: 466 ELFF----AKGWVKKIEDIYNL-KNNYDDLLKLEN---FQEHSVNVLLHKIEESKDVYTW 517 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 + I +LGI+++G ++A+SL K + ++N + + +++ N D+ L + G + ++ Sbjct: 518 KLIAALGIKNIGKKLAKSLVK--IIFENDQKNLLSLLEFNYDE---LEKYDEFGSVKIES 572 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 + EF+ N N ++ L + E S+++ENK + TGTL+K R + + Sbjct: 573 LKEFFANDENRNLIQFLDQNGFELKMEKEIIQSTKLENKTFLITGTLEK-PRDFYKNLII 631 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 Q G ++S+ +S+K D +IVG NPGSK +KA +L +KI++EE Sbjct: 632 QNGGIISSSISKKLDYLIVGQNPGSKEKKAMELNIKIIDEE 672 >gi|313904335|ref|ZP_07837713.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6] gi|313470885|gb|EFR66209.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6] Length = 670 Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 209/717 (29%), Positives = 354/717 (49%), Gaps = 69/717 (9%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E + L+++I YH D YY +P I D EYD L PD P+ P KI Sbjct: 4 EEYNRLKEKIDYHMDRYYNLDEPEISDYEYDQLMIALKKAEKEHPDWI---SPDSPSQKI 60 Query: 79 GGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG KVTH +P LS+E +++ E + ++T++ F++E KIDG Sbjct: 61 GGTAKREAGVKVTHRVPMLSIEDVFDKEAVTAWVTKVRDLHP-----DAVFSVETKIDGL 115 Query: 138 MITIRYEK------GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 +T+RYEK K + A RGDG GEDV+ IP + + L L + +E+RGEV Sbjct: 116 SMTLRYEKVAGTDSMKLMLAETRGDGLVGEDVTLNALVIPDVQKTLKLPY-DYLEIRGEV 174 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 Y++ DF N+E +G+K ANPRN A+G LR+L+ + IT R L FV + Sbjct: 175 YMTHEDFDRFNEEQERLGKKLAANPRNLAAGTLRQLDAS-ITKERGLRMFVFNVQDAPAE 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHG--IVSYYNEMKSIRSTLPYDIDGLVYKVD 307 F L + G V N + +++ +E+ +R+ LPYDIDG V K++ Sbjct: 234 FLADHSAALDALAACGVQT---VYHRNCVNATEVLAAIDEIAEMRADLPYDIDGAVVKIN 290 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL------EPV 361 + + + ++ I++K+ ++ + +I + +GRTG LT +P Sbjct: 291 QTAYRNDFPAGSKYSSGHIAYKYPPEERVVEMDEIIVNVGRTGKLTFTGSFHDAETGKPA 350 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G ++ ATLHN+DYI + I VG + ++GE+IPK+ + + Sbjct: 351 RLCGTSVSRATLHNQDYITEMS-----------IGVGGHYRLFKSGEIIPKLNGCV---K 396 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P+ F P CP+C ++R+ + A RC +C AQ + +F SR+ Sbjct: 397 EPETV-FVAPKTCPVCGHPLIREED------TADIRCVNP-SCPAQLSRTVAYFTSRNCM 448 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I GLG ++ + ++ ADI+ L+ + K I+G + + L D+ Sbjct: 449 DIAGLGDTLVEALIRE----GYLKNYADIYKLRAYRDEMVEK--GIIG-KEKNTDKLLDA 501 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I+ + + R + +LGIR+VG+ A+ L K+Y S + ++ L+++ Sbjct: 502 IDASKKQNPARLLTALGIRNVGSSTAKELMKHYASIRELSKATAE----------ELVQL 551 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 P +G A IVEF+ + N+ ++ L K + E+ S ++ +V TGTL + Sbjct: 552 PDIGSTTAGDIVEFFSDSENLRMIDELEKSGVNMVVEKEEGGSDKLAGMTIVVTGTLPTL 611 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+E + + G + +S+KT +++ G+ GSKL KAQ+LG+K+++E + L ++ Sbjct: 612 GRSEAKELIEKNGGKCTGSVSKKTTLLVAGEAAGSKLTKAQELGIKVISEAELLAMI 668 >gi|168186072|ref|ZP_02620707.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund] gi|169295952|gb|EDS78085.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund] Length = 664 Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 200/654 (30%), Positives = 337/654 (51%), Gaps = 58/654 (8%) Query: 71 PNGPLNKIGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKF------ITRIYRFWQKKDD 123 P P ++G ++ LS F K TH SL K +++++ + + Y + Sbjct: 54 PYSPTQRVG-DVVLSKFNKYTHKGKLWSLGKAQSLKEVEDWHNKNVKVVNEYNLTHEDKL 112 Query: 124 NSIFFTLEPKIDGTMITIRY-EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 I + + K DG I Y E G V AA RG G GE+++A + I TIP L ++ Sbjct: 113 PPIKYIVTKKFDGLTINCTYNEDGILVTAATRGTGEIGEEITAQAKTIKTIP--LKMDNH 170 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVH 241 +IEV GE ++K F +E V P N RN A+G LR LN + R L+ F + Sbjct: 171 AVIEVHGEAIMTKEAF----EEYNKVAVVPLKNLRNGAAGALRNLNVKETARRNLSAFFY 226 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 +G K EML+ ++ G P+++ Q +T I N ++ IR L YDIDG Sbjct: 227 DIGYNEGTPFKTYSEMLKFIKEHGIPMDDYAEQCSTVEEIEKEINYIEEIRDKLNYDIDG 286 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 V VD+ ++ LG + P+W +++KF ++A+T+LL+++ +GR+G +TP A LEPV Sbjct: 287 AVIAVDDMRTRELLGYTVKFPKWALAYKFEAQEATTKLLEVEWNVGRSGRVTPTAILEPV 346 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 IGG + ATL+N D I+ R G +++G V ++R+ +VIP+++ +V E Sbjct: 347 EIGGVTVKRATLNNMDDIE---------RKG--VKLGSTVFLRRSNDVIPEIMG-VVEES 394 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDA 480 A+ P+ CP C S +V++ H C L+C Q ++ + HF SR+A Sbjct: 395 LEGAKDIKSPTTCPYCGSEIVQE---------GVHYFCENTLSCKPQLVKSIVHFGSREA 445 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 NI G ++ + F+ D I+ +D++ +++ + FG+ NL D Sbjct: 446 MNIAGFSEKTAEQLFEELD----IKSISDLYRIKKEDLLKLNR------FGEKKAQNLID 495 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I ++ L FI++LGI +VG + + L K + + N + L+ Sbjct: 496 AIENSKDCDLPSFIYALGIPNVGKKTSTDLCKKFKTLDNLKEA----------KIEELVS 545 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 V +GDI+AQ++++F+ + + +++ LL + E+ + K +V TG+L Sbjct: 546 VEDIGDIVAQSVLDFFNDDTILKSIDELLSLGVIPKFKEEEIEENIFNGKTVVVTGSLSS 605 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R++ +E + LGA V+ +S+KTD ++VG +PGSK EKA QL +KI++E++F Sbjct: 606 FSRNEIKEKLQSLGAKVAGSVSKKTDYVLVGKDPGSKYEKAVQLNIKIISEDEF 659 >gi|293188969|ref|ZP_06607703.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309] gi|292822104|gb|EFF81029.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309] Length = 777 Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 172/487 (35%), Positives = 265/487 (54%), Gaps = 27/487 (5%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+ + E R + L I+ YY P + D++YD + R + I +P L R Sbjct: 3 PMADSTFETTRDRYNDLVDRINDARAAYYDRDSPTLADADYDRMYREVEQIEERYPQL-R 61 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 S D P +GG ++ +V H +SL+ ++++E+L + TR+ D + Sbjct: 62 SAD--SPTMSVGGSVDSGFSEVRHLAQMMSLDDVFSLEELAAWETRMAEATGISD---LE 116 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 T E K+DG I + YE G+ V AA RGDG+ GEDV+A R I +IP+ L+ +P IEV Sbjct: 117 MTTEVKVDGLSINLLYENGRLVRAATRGDGYVGEDVTANARTIASIPQTLTGTVPARIEV 176 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-- 244 RGEVY DF A N+ + G K + N RNAASG LR+ +PT+ R L+ HG+G Sbjct: 177 RGEVYFPVADFAAFNEARVEAGEKTFVNARNAASGSLRQKDPTETAKRPLSMVAHGIGFV 236 Query: 245 KTSEIFAKGQYEM--LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + E F + +M +++R G PV+ R I E+ R L ++IDG+ Sbjct: 237 EVGEDFTEPTTQMGWYEQLRDWGLPVSPYTRMLTGRKAIEERIAELGEKRHDLEHEIDGV 296 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V K+++ LQ+ LG +R+PRW ++KF ++ TRLLDI +Q+GRTG +TP +E V Sbjct: 297 VVKINDLDLQRSLGSTSRTPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMESVL 356 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G+ + ATLHN + +V R G + +GD V++++AG+VIP++V + + R+ Sbjct: 357 VAGSNVARATLHN---------AQEVARKG--VLIGDLVVLRKAGDVIPEIVAPVEDARN 405 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 +PF P CP C + +V++ K G + RC C AQ ERL H +R A + Sbjct: 406 GSERPFVMPKQCPSCGTTLVQE---KEGDV--DLRCPNKGLCPAQITERLAHVGARSALD 460 Query: 483 IEGLGKQ 489 +EGLG + Sbjct: 461 VEGLGDE 467 Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 89/179 (49%), Gaps = 12/179 (6%) Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIR 600 + K ++ L R + +L IRHVG AR+LA+ +LS A + + A Sbjct: 602 LEKAKSQPLARVLVALSIRHVGPTAARALAEKFLSMDALRAASVEELSA----------- 650 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 V VG+ I +++ +++ ++ ++A + + S + +V +G + Sbjct: 651 VEGVGEEIGRSLRDWFTVDWHLEVLQAWARAGVRMADEAPEPTSDVLAGLTIVVSGAMPG 710 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A+E +T G + +S+KT +++ G GSK +KA++LGV ++ E+QF LL+ Sbjct: 711 YDREGAKEAITSRGGKAAGSVSKKTSLVVAGPGAGSKEKKAKELGVPVITEQQFADLLE 769 >gi|315124105|ref|YP_004066109.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017827|gb|ADT65920.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 561 Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 178/540 (32%), Positives = 289/540 (53%), Gaps = 49/540 (9%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYD L R F + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDVLIREL----RVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L+++W++ED+ F R W K+ F +EPK DG + + YE GK V A Sbjct: 74 ----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++ E IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEVGEDITLNVFEIENIPK--NIAYKERIEIRGEVVILKDDFEKINEKRALLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T IT R L F+ G+G+ + F K +++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSDVMQFIRELGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 ++ ++ Y+E+ ++R P +DG+V +VD+ +L ++LG + P++M + KF Sbjct: 244 IKLCANLDEVLKAYDELLALREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVVVKSATLHNFDEIARL--------- 354 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 D+++ D V V R+G+VIPK+ + R S P CP CQS ++ + G Sbjct: 355 --DVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLDE-----GT 407 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 L+ + C + + + HFVS+ NI+GLG+ ++ +K + I Sbjct: 408 LIKCQ----NIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK----------KIT 453 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ + E + GF + + NL ++I + R L RFI +LGI H+G A+ L+ Sbjct: 454 TLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLS 513 >gi|115379272|ref|ZP_01466385.1| DNA ligase [Stigmatella aurantiaca DW4/3-1] gi|115363713|gb|EAU62835.1| DNA ligase [Stigmatella aurantiaca DW4/3-1] Length = 443 Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 160/425 (37%), Positives = 246/425 (57%), Gaps = 30/425 (7%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + + ++ A L +E+++H+ YY P + D+EYD L R + FP LA Sbjct: 40 LPPVDLKTAETRARDLRRELAHHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPALA-- 97 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P ++GGE KV H P LSL ++N E+ +F RI + D + + Sbjct: 98 -TPDSPTQRVGGEAAEKFAKVVHRAPMLSLANVFNDEEFTEFDERIRKVVGPAD---VTY 153 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEI 184 EPK+DG IT+RYE G+F+ A RGDG +GEDV+ +R + +P L + +P + Sbjct: 154 VCEPKLDGLAITLRYENGRFLQGATRGDGTTGEDVTGNLRTVRPLPLELLPEAGMAVPPV 213 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +EVRGEV+I K DF LN++ G +ANPRNAA+G LR+L+P +R L+ ++ + Sbjct: 214 LEVRGEVFIRKEDFKKLNEKREEEGEALFANPRNAAAGSLRQLDPKITASRPLSVSLYEI 273 Query: 244 GKTSEIFA----KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 T + A + E LQK LG PVN+ R A G+ + Y R L +++ Sbjct: 274 VPTEGVPAFDTHTAKLEYLQK---LGLPVNHHER-AQGLEGVRAAYQAALKGRHALKFEV 329 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KVD +++LG+ ++SPRW +++KF ++ STR+ I++Q+GRTG LTPVA L+ Sbjct: 330 DGMVVKVDSEDQRRRLGQVSKSPRWAVAYKFPPEEESTRVEAIEVQVGRTGALTPVAHLK 389 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ ATLHNED ++ +D+R GD V V+RAG+VIP++V ++ N Sbjct: 390 PVKVGGVTVSRATLHNEDELR-----------RKDVRQGDTVFVRRAGDVIPEIVSVVPN 438 Query: 420 ERHPD 424 +R D Sbjct: 439 QRPAD 443 >gi|187918415|ref|YP_001883978.1| NAD-dependent DNA ligase LigA [Borrelia hermsii DAH] gi|254781263|sp|B2S0Q2|DNLJ_BORHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119861263|gb|AAX17058.1| NAD-dependent DNA ligase [Borrelia hermsii DAH] Length = 669 Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 208/703 (29%), Positives = 352/703 (50%), Gaps = 59/703 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE E+ L+ I + YY S P + D YD R + +P+ + P Sbjct: 2 IEDVEDEILRLKNIIKRWNREYYVDSSPSVGDLTYDKALLRLQDLESKYPEYKTLDSPTF 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 + G ++ +V HS P LSL+K ++I+ L +I ++ ++EPK Sbjct: 62 ---RFGSDLLNDFEEVKHSFPILSLDKTYDIKGLSLWIEKMV-LESAISGLHTGISVEPK 117 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEV 191 IDG I + Y+ G A RGDG G DV+ ++ I +P L I E IE+ RGE+ Sbjct: 118 IDGCSIVLHYKDGILEKALTRGDGRVGNDVTENVKTIRNVP----LRIDEKIELVLRGEI 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 YI+K +FL +N + + PY N RN ASGILRR++ ++ + L+ FV+ + +S + Sbjct: 174 YITKENFLKINRTL----KNPYVNARNLASGILRRISSKEVANFPLDIFVYDILYSS-LK 228 Query: 251 AKGQYEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ K++ GF VN N GI+++ +++++R + Y+IDG+V K+D Sbjct: 229 LNTSHDAFDKLKQFGFKVNPFCEFFGGKNLEAGIIAHVKKIEALRDSFEYEIDGVVLKID 288 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 F L+K LG + P+W I++KF ++++DI +Q+GR+G +TPVA +E V + GA Sbjct: 289 SFILRKILGSTSHHPKWSIAYKFESCTGMSKVVDIVVQVGRSGKITPVAHVEKVLVAGAS 348 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ITNA+LHN+DYI D G + VGD V++ R G+VIP VD+++ + Sbjct: 349 ITNASLHNQDYI---DFVG--------LNVGDIVVISRRGDVIP-AVDLVIEKLA--VGS 394 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F PS CP C+ ++++ AH CS + +E++K+F S+ NI GL Sbjct: 395 FKIPSNCPSCKMTLIKE---------GAHLFCVNRHCSCRIIEQVKYFCSKKCMNIVGLS 445 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++F F+ + I +++T + ++ N+ GF + NL SI ++ Sbjct: 446 EKTIEFLFEKK----FISSEVELYTF------NCDRLINLKGFNLKRINNLKRSIEDSKS 495 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + + +GI+ +G L L N I+ + + L+++ +G+ Sbjct: 496 RPFRKLLLGMGIKDLGENTILVLINNNL---NSFDTISTLCKNKEAALAKLLKIKGIGER 552 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN---VSSEIENKKLVFTGTLQKIQRH 664 IA I+E + N + I KE+ + N S + KK TG+ + R Sbjct: 553 IALNIIEAF-NDKTILDKFNFFKELGLKMEEDNTNDAVYDSFLFGKKFCITGSFKGYSRD 611 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 E +T+ GAV S +++ D ++VG+ G K++KA LG+K Sbjct: 612 VLIEKLTKKGAVFSRSVTKCLDFLLVGEKFGLKVQKANNLGIK 654 >gi|302670775|ref|YP_003830735.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316] gi|302395248|gb|ADL34153.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316] Length = 675 Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 216/726 (29%), Positives = 352/726 (48%), Gaps = 77/726 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E+ R +L EI +H D YY +P I D EYD L R + +P+L ++ P+ Sbjct: 6 EEIRNNYDALVSEIKHHMDLYYNQDEPEISDYEYDQLMIRLKKMESEYPELVSNDSPS-- 63 Query: 75 LNKIGGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 +GG K+TH++P LS+E ++ E + +++T+++ F+ E K Sbjct: 64 -QIVGGVAKREAGVKITHNVPMLSIEDVFTTEAVSEWVTKVHALHP-----GALFSAEIK 117 Query: 134 IDGTMITIRYEKG------KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 IDG +++RY K A RGDG GEDV+A IP + RV+ L + +E+ Sbjct: 118 IDGLSMSLRYRKSPEDDKLHLELAETRGDGLIGEDVTANALMIPDVKRVIDLPY-DYLEL 176 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGK 245 RGEVY+S +F N+E G+K ANPRN A+G LR+L+PT ITR L FV + Sbjct: 177 RGEVYMSHENFEKFNEEQEKSGKKIAANPRNLAAGTLRQLDPT-ITRDRGLRMFVFNIQD 235 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + + + L+ + G PV +Q + +++ E ++R L YD+DG V K Sbjct: 236 GPQELMESHCKGLEILANAGVPVVFH-KQCSDTQEVIAAITEFGNMRENLEYDLDGAVIK 294 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL------E 359 VD + + ++ I++K+ ++ + +I + +GRTG LT + Sbjct: 295 VDHTAWRDDFPAGSKYSSGHIAYKYPPEERVVVMDEIIVDVGRTGKLTFTGSFHDRETGK 354 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 P + G ++ ATLHN+DYI + I +G + ++GE+IPK+ + Sbjct: 355 PARLCGTSVSRATLHNQDYINEMQ-----------IGIGGEYKLFKSGEIIPKLNGCV-- 401 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + P+ + P CP+C S +VR+ + A RC C AQ + +F SRD Sbjct: 402 -KAPEIV-YKAPEHCPVCGSLLVREED------TADIRCINP-TCPAQVTRTIAYFTSRD 452 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN-L 538 A NI GLG +D ++ ADI+TL R + K I+G V T+ L Sbjct: 453 AMNIMGLGDTLVDALVSE----GYLKTYADIYTLGRHRDELIEK--GIIG--KVKNTDKL 504 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 I K + R + L IR+VG AR + K++ + Sbjct: 505 LGEIEKSKENDPVRLLTGLAIRNVGKSTAREIMKHFDDLMELTKVTRE----------GF 554 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL-----V 653 +++P +G+ A + EF+ + N+ +E + S+G + K V S + KL V Sbjct: 555 LQIPDIGETTANDLYEFFHDEHNLQILEQM-----NSLGLNMKVVESNDSSDKLSGMTIV 609 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGTL + R +A+E + + G S +S+KT +++ G+ GSKL KA LG+K++NE + Sbjct: 610 VTGTLPTLGRKEAEELIVKNGGKASGSVSKKTSLVLAGEAAGSKLTKANDLGIKVINEAE 669 Query: 714 FLFLLQ 719 FL +++ Sbjct: 670 FLEMIK 675 >gi|183219642|ref|YP_001837638.1| DNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909780|ref|YP_001961335.1| DNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|190359263|sp|B0SA75|DNLJ_LEPBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781356|sp|B0SKC1|DNLJ_LEPBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|167774456|gb|ABZ92757.1| DNA ligase (NAD+) (contains BRCT domain type II) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778064|gb|ABZ96362.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 671 Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 214/713 (30%), Positives = 357/713 (50%), Gaps = 62/713 (8%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E +K + +L +EI H+D YY+ + P+I D E+D L + + PDLA D + P Sbjct: 8 EDPKKRIITLRKEIGRHNDLYYKENAPVITDKEFDILVKELQKLESENPDLA---DVSSP 64 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G +++ K H +P LSLE +N +L + W +K ++LE KI Sbjct: 65 TAQVGSDLSPQFSKFKHKVPVLSLENTYNETELSE--------WLEKTGIEENYSLEWKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + YEKGK RG G G+ V+ ++ I TIP LS + + VRGE++++ Sbjct: 117 DGASILLYYEKGKLTNCVTRGSGGIGDVVTENVKTISTIPHTLSEEMN--LTVRGEIFMT 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 DF N+E G K +ANPRN A+G +++ +P D+ R L +V+ + +S KG Sbjct: 175 FADFEEFNEEY---GGK-FANPRNLAAGSIKQKDPLDVAKRPLRIYVYDVYFSSS--RKG 228 Query: 254 ---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++L ++ FP+ T ++ + + +P+ +DGLV K+D + Sbjct: 229 INTHKDILSLLKKEKFPLAPDTTIL-TGKKLLREIESFRKKKDKMPFPVDGLVIKLDSLN 287 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L++ LGE + SPRW + KF + + +ID IGRTG +TP A++ P+++ G +T Sbjct: 288 LRESLGETSHSPRWARAFKFDALLKESTIEEIDFAIGRTGKVTPRAKVTPISLAGTTVTY 347 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+DYI L A +G +VL+ + GE+IP V + P F Sbjct: 348 ATLHNQDYINQLGAG-----------IGAKVLISKRGEIIPAVEKVTF----PPKTIFVL 392 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C +++ + + CT C ++L +L F S+ NIEGLG++Q Sbjct: 393 PNQCPSCNTKLTKVDDS------VDFFCT-NRHCPERKLNQLIFFCSKKQMNIEGLGERQ 445 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + FF + + IP D++TL++ + T + + GFG+ SV ++D+I K + Sbjct: 446 IQIFF---EKGWVKDIP-DLYTLEKYKPT----LLELDGFGEKSVKIIFDAIEKSKEKDF 497 Query: 551 ERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 + S+G+ VG ++ L + Y S+ + A N+D L + +G Sbjct: 498 RFTLPSIGLNEVGPKVTEILIENGYDSWDKLLTLSKSKTA--NED---LKAIHGIGPRTI 552 Query: 610 QAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQ 667 +A++ ++ + V L K + EK+ + TG+ + Q R A Sbjct: 553 EALLTHLKDKETLKLVATLKKLGLKFQADETEKSDLQPFVGQSWCVTGSFENFQPRDLAM 612 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +T+ G +S KT ++ G GSKL+KA +LGVK++ E +FL LL+Q Sbjct: 613 DLITKHGGKKVTSVSSKTTHLLYGPGAGSKLDKATELGVKLVTESEFLDLLKQ 665 >gi|325972726|ref|YP_004248917.1| DNA ligase, NAD-dependent [Spirochaeta sp. Buddy] gi|324027964|gb|ADY14723.1| DNA ligase, NAD-dependent [Spirochaeta sp. Buddy] Length = 696 Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 214/734 (29%), Positives = 368/734 (50%), Gaps = 85/734 (11%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ SL ++++ + YY ++P++ D EYD L R A+ +P L ++ P ++G Sbjct: 7 EIHSLVEQLASYQKAYYVDNRPLVSDLEYDRLFDRLVALETQYPHLKLADSPT---QRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 +++ +L +V H+IP LSL+K ++ ++ +I + + K + +E KIDG I Sbjct: 64 SDLDSALVEVAHTIPVLSLDKAYSDGEMLSWIEKT----ELKIGEEVGIVIEEKIDGISI 119 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 + YE G A RG+G G DV+A ++ I +IP L L + E + VRGE+Y+ K F Sbjct: 120 VLYYEDGLLKRAVTRGNGMVGNDVTANVKTIASIP--LRLPVKESLAVRGEIYLPKETFA 177 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQYEML 258 LN +M P+ANPRN A+G +RR+ +++ + L FV+ G E+ ++L Sbjct: 178 KLNAQM----EVPFANPRNLAAGTIRRIKSSEVAKVPLQIFVYE-GFWKEVVHTDHLQIL 232 Query: 259 QKMRCLGFPVN----------NGVRQA----------NTFHGIVSYYNEMKSIRSTLPYD 298 + GF +N + RQA +F + SY + R++L Y+ Sbjct: 233 STLASYGFRLNPNLGYFAKDASQARQALMDAQLSGFGGSFSDLASYIQDHTQKRASLGYE 292 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDGLV KV+ S ++ LG PRW +++KF QA T + ID+Q+GRTG +TPVAR+ Sbjct: 293 IDGLVAKVNSLSGREMLGYTGHHPRWAMAYKFESPQAQTVVQAIDVQVGRTGRVTPVARV 352 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV + G+ I+N TLHN+DYI L ++ +GD V + R G+VIP V +I Sbjct: 353 VPVQVAGSTISNITLHNQDYINML-----------ELGLGDTVEISRRGDVIPAVERVI- 400 Query: 419 NERHPDAQP-FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 E++ +Q + P+ CPIC S T + AH ++C AQ R++ F+ Sbjct: 401 -EKNESSQGIYHMPTRCPICDS---------TLESRGAHTFCPNISCPAQIRGRIEFFIG 450 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 ++ +I+ G + D + ++ DI+ + R+ S GFG+ + Sbjct: 451 KEGMDIDNFGPETAAALI---DLGY-LKDIDDIYRIDYRKALSDQA-----GFGEKKIRL 501 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 + + K + + + +LG+ E+ + A+ L+ + EI IA N D Sbjct: 502 IEGGVQKSKEQPFRKVLVALGL----PELGKKGAELLLANGITSMEILLDIA-NRGDVQR 556 Query: 598 LIRVPLVGDIIAQAIVEFYQNP---RNICAVEAL---LKEVSPSIGRHEKNVSSEIENKK 651 L + +G+ IA+ +E P + I + +L + E + + + + S ++ Sbjct: 557 LTSIKQIGEKIARLYIEALCEPAMQQRIARLASLGLAMAEGEQQLQKLDDSFSGQV---- 612 Query: 652 LVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 TG+ + R A + V + G + ++ KT ++ G+ GSKLE A+ L V++++ Sbjct: 613 WCVTGSFEHFNPRSLAMDEVVKRGGRTVSSVTSKTTHLLAGEGGGSKLETARSLKVQVVD 672 Query: 711 EEQFLFLL--QQYN 722 E+ FL LL +Q+N Sbjct: 673 EQTFLTLLKSKQHN 686 >gi|330722364|gb|EGH00218.1| DNA ligase [gamma proteobacterium IMCC2047] Length = 394 Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 165/420 (39%), Positives = 246/420 (58%), Gaps = 42/420 (10%) Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + Y+IDG+V+K++ LQ ++G +R+PRW I++KF ++ T+LL ++ Q+GRTG +TP Sbjct: 1 MHYEIDGIVFKLNSLELQNKVGFVSRAPRWAIAYKFPAQEEITQLLGVEFQVGRTGAVTP 60 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG ++NATLHN D I+ L +R GD V+V+RAG+VIP+VV Sbjct: 61 VARLQPVFVGGVTVSNATLHNGDEIERL-----------GVRCGDTVVVRRAGDVIPQVV 109 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 +++ +R ++ FPS CP+C S V+R G+ VA RCTGGL C+AQ+ + +KH Sbjct: 110 QVVLEKRPENSTAIEFPSSCPVCGSDVIR----AEGEAVA--RCTGGLYCAAQRKQAIKH 163 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F SR AF+IEGLG + +D + I AD+F LQ + N+ GD S Sbjct: 164 FASRKAFDIEGLGDKLVDMLVDQQ----LINSIADLFHLQHE------ALSNLERMGDKS 213 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 NL D++ K + +L RFI++LGIR VG A +LA ++ Q + ND Sbjct: 214 AQNLLDALQKSKQTTLARFIYALGIREVGEATAANLAHHFADLGALMQAKEEQLLEVND- 272 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSS-EIENKK 651 VG I+A I F+Q P N +EALL E PS+ + KNV + + + Sbjct: 273 ---------VGPIVASHIAHFFQQPHNQEIIEALLAEGIRWPSVDK--KNVEAMPLAGQT 321 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 V TGTL+ + R +A+ + LGA VS +S KT ++ G + GSKL KA+ LG+++ +E Sbjct: 322 WVLTGTLETLTRDQAKSRLVALGAKVSGSVSAKTHCVVAGASAGSKLTKAESLGIEVRDE 381 >gi|304405678|ref|ZP_07387337.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9] gi|304345717|gb|EFM11552.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9] Length = 689 Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 209/722 (28%), Positives = 338/722 (46%), Gaps = 78/722 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q + + L EI H YY +P I D+E+D L A+ + + P Sbjct: 17 QQLERMRKLADEIERHSYSYYTLDRPTISDAEFDKLYDELVALEKTIGIVLE----HSPT 72 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDNSI-----F 127 ++G E+ + H SL+K N+EDLR + R+ + W K + Sbjct: 73 QRVGNELLKGFDQHRHRARLWSLDKAQNVEDLRAWNQRVQKGINDWNSKHPDETPLPEPS 132 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EI 184 + LE K DG + + YE G+ + AA RG+G GE + A ++ I ++P L IP I Sbjct: 133 YVLELKYDGLTLNLTYENGRLIQAATRGNGVVGEGILAQVKTIRSVP----LTIPFRDGI 188 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +EV+GE ++ + A N +P N RNAA+G LR NP R LN F + + Sbjct: 189 VEVQGEGIMNLSVLEAYNQ----TAEEPLKNARNAAAGALRNQNPKITAERKLNAFFYNI 244 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G + K ++ Q + F VN V ++ + + +R TL Y IDG V Sbjct: 245 GHAEGVSFKTHQQLQQFLIENKFKVNPYVTYHDSMESVEEELLRVTEMRPTLDYLIDGAV 304 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K+ + ++ LG + PRW ++ KF ++ +T L + ++GRTG +TPVAR+EPV + Sbjct: 305 VKLVDMRTREALGYTDKFPRWAVAFKFEAEETTTVLESVSWEVGRTGKITPVARVEPVEL 364 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + N TL+N G + R +G RV ++R+ +VIP+++ +E Sbjct: 365 AGVTVQNCTLNN---------MGDIDRKNLKHALGTRVFIRRSNDVIPEILGKADDE--- 412 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + PS CP C + L + L C L C Q + R+ HF SRDA +I Sbjct: 413 EGTEIEVPSACPSCGTA----LEQRGAHLF----CNNKLGCKPQMIGRITHFASRDAMDI 464 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 E + ++ +R PAD++TL K+E FG+ L ++ Sbjct: 465 ETFSVMTAEQLYEE----CGVRDPADLYTL---GYDDLIKLER---FGERKAQKLIEAFE 514 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K ++ L F+F+LGI + G + LA ++ S Q L+++P Sbjct: 515 KSKSRDLAAFLFALGIPNTGKATTKVLADHFGSLDAVLQATEE----------QLVQLPD 564 Query: 604 VGDIIAQAIVEFYQNPRNICAV----------EALLKEVSPSIGRHEKNVSSEIENKKLV 653 +G I+A +IV F+ +P ++ EA ++ V +I + V + K +V Sbjct: 565 IGGIVADSIVSFFADPLMQASISKMREQGVRAEAEIRRVPSAI----EGVDNVFTGKTVV 620 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGTL + R +A + + LGA V+ +S+KTD +I G++ GSKL KAQ LG+ ++ +E Sbjct: 621 LTGTLSTMTRDEAAKKLEALGAKVTGSVSKKTDFVIAGESAGSKLTKAQSLGIAVIEDEA 680 Query: 714 FL 715 Sbjct: 681 LF 682 >gi|119953337|ref|YP_945546.1| NAD-dependent DNA ligase LigA [Borrelia turicatae 91E135] gi|254781266|sp|A1QZY4|DNLJ_BORT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119862108|gb|AAX17876.1| NAD-dependent DNA ligase [Borrelia turicatae 91E135] Length = 676 Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 209/703 (29%), Positives = 356/703 (50%), Gaps = 60/703 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I+ E+ L I + YY S P + D YD R + +P+ + P Sbjct: 10 IKDIEDEILCLRDNIRKWNKEYYVDSSPSVSDLTYDKALLRLQDLESKYPEYKTLDSPTL 69 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 K G ++ + +VTHS P LSL+K ++I++L +I ++ + ++EPK Sbjct: 70 ---KFGSDLLNNFEEVTHSFPILSLDKAYDIKELLLWIEKMV-LEGSSLGSYTGISVEPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEV 191 IDG I + Y+ G A RGDG G DV+ +R I +P L+I E +E+ RGE+ Sbjct: 126 IDGCSIVLYYKDGILQKALTRGDGRVGNDVTENVRTIKNVP----LSIDEKVELVLRGEI 181 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 YI+K +FL +N + + PY N RN ASGILRR+N ++ + L+ FV+ + +S Sbjct: 182 YITKENFLKINHTL----KNPYLNARNLASGILRRINSREVASFPLDIFVYDILYSSFGL 237 Query: 251 AKGQYEMLQKMRCLGFPVNNGVR--QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ++ K++ GF +N + I ++ +++ R++L Y+IDG+V KVD Sbjct: 238 ST-NHDAFDKLKKFGFKINPFCKFFGGKNLEEITNHVKKIEMQRNSLEYEIDGVVLKVDS 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F L+ LG + P+W +++KF ++++DI +Q+GR+G +TPVA +E V + GA I Sbjct: 297 FILRDILGYTSHHPKWSVAYKFESCTGVSKIVDIVVQVGRSGKITPVAHVEKVFVAGAFI 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNA+LHN+DYI D+ G + VGD V + R G+VIP V+++V + + F Sbjct: 357 TNASLHNQDYI---DSIG--------LNVGDVVAISRRGDVIP-AVELVVEKLSIGS--F 402 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 S CP C+ ++++ +H C + +E++K+F S+ NI GL Sbjct: 403 KISSNCPSCKMALIKE---------GSHLFCVNKHCPYRIIEQIKYFCSKKCMNIVGLSG 453 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++F F E S I F R + N+ GF + NL SI+ + Sbjct: 454 KTIEFLF--EMKFISSEIELYTFNFDR--------LINLRGFDLKRIDNLKRSISDSKGR 503 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS-LIRVPLVGDI 607 + + +GI+ +GA L L+ + +I + + N + L+ L+++ +G+ Sbjct: 504 PFRKLLLGMGIKELGANTILVLINNNLN----SFDIISTLCKNKEAALAKLLKIKGIGEK 559 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRH 664 IA I+E + N + I KE+ + + N S + KK TG+ + R Sbjct: 560 IALNIIEAF-NDKIILDKFNFFKELGFKLEEYNTNYVVDDSFLFGKKFCITGSFEGHSRD 618 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 E +T+ GA+ + ++++ D ++VG+ PG KL+KA LG+K Sbjct: 619 VLIEKITKKGAIFNRAVTKRLDFLLVGEKPGLKLQKANNLGIK 661 >gi|15894478|ref|NP_347827.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824] gi|81530636|sp|Q97JS8|DNLJ1_CLOAB RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|15024117|gb|AAK79167.1|AE007633_11 DNA ligase (NAD dependent), LigA [Clostridium acetobutylicum ATCC 824] gi|325508609|gb|ADZ20245.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018] Length = 663 Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 203/716 (28%), Positives = 356/716 (49%), Gaps = 72/716 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 K + L ++++ + YY PI+ D EYD + + +L R E+ PN Sbjct: 2 KLIEDLIEKLNKYSYSYYVLDNPIVADKEYDIM----------YDELKRLEEETEYINPN 51 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIYRFWQKKDDN------S 125 P ++G ++ L F+ TH L SL+K ++++ F+ + +F ++ + S Sbjct: 52 SPTQRVG-DIILDKFEKTHHKNKLWSLDKAQKKDEVKAFVNKCVKFVEQYNLTHSEKLPS 110 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 F + K+DG I Y + + + +A RG G GED++ + I +P ++N I Sbjct: 111 PQFVVTQKLDGLTINCSYNESRLIKSATRGTGEIGEDITEQSKTILNLPN--AINYSGEI 168 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLG 244 +V GE ++KN N + V P N RN A+G LR LN + R L + L Sbjct: 169 DVHGEALMTKNALEQYNSNL-KVNETPLKNLRNGAAGALRNLNIKETARRKLVAQFYDLS 227 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 T + K E+L ++ GF + N F I + + +RS+L YDIDG+V Sbjct: 228 YTDKKLKKYS-EILLFLKSQGFNITE-YNICNNFDEINQAIDNIGEVRSSLQYDIDGVVI 285 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 ++++ + +G + P++ I++KF K+ +T+L+D++ +GR+G + P A LEPV + Sbjct: 286 RLNDIETSRLMGYTIKCPKYAIAYKFKAKETTTKLIDVEWNVGRSGRINPTAILEPVELA 345 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ ATL+N + I+ G RV ++R+ +VIP+++ + Sbjct: 346 GVIVKRATLNN-----------MDDIKRKKIKKGARVFLRRSNDVIPEIMGVTEETEGET 394 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHR-CTGGLACSAQQLERLKHFVSRDAFNI 483 + + P+ CP C S +V++ H C L+C Q ++ + HF SR A NI Sbjct: 395 KEIEA-PTICPYCGSEIVKE---------GVHLFCENTLSCKPQMVKSIVHFASRKAMNI 444 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EG ++ + F+ +I+ +D++ + + + S K F D +NL ++I Sbjct: 445 EGFSEKTAEQLFEK----LNIKSISDLYRITKEELMSLDK------FKDKKASNLINAIE 494 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + L+ F++SLGI +VG + A L K + S++N + + LI V Sbjct: 495 KSKECDLDSFVYSLGIPNVGKKTATDLCKQFKSFENIKKA----------SYFELILVQD 544 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G I+A++IV+F++ + ++ L K + S +K +V TG+LQ R Sbjct: 545 IGSIVAKSIVDFFKQEKIEKSLNELFKLGVKPSYEESEVSESVFNDKTVVATGSLQNYSR 604 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +E + LGA V+ +S+KTD +I G+N GSK +KA LGVKI+ EE+F L++ Sbjct: 605 TEIKEKLESLGAKVAGSVSKKTDYVIAGENAGSKYDKAVALGVKILTEEKFEELIE 660 >gi|255316598|ref|ZP_05358181.1| DNA ligase, NAD-dependent [Clostridium difficile QCD-76w55] Length = 663 Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 215/713 (30%), Positives = 342/713 (47%), Gaps = 64/713 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +++ L +E+ HD Y + PII D+EYD L + + +P+ + D N Sbjct: 1 MNKVEEKIRDLREEVIKHDLAYAK-GDPIISDTEYDKLYLKLVGLEELYPEYS---DENS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +I L KV H+IP LS +KI ++L KFI Q D+ +E K Sbjct: 57 PTKRIIDIKVEGLKKVEHTIPMLSQKKINTPDELDKFIR------QMNDE----LLVEDK 106 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG + +Y G RGDG G+D++ + P IP+ + N + +E+R E I Sbjct: 107 LDGLTVIAKYNNGVLYEGITRGDGKIGDDITHIVLNTPNIPKTIPFN--DYLEIRLEGII 164 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 DF +N I Y + RN ASG +R LN R L L K I + Sbjct: 165 PNEDFEMVNS--ILEEEDKYKSSRNLASGTVRSLNGCVAKERGLKLIAFELVKADNIIFE 222 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSY------YNEMKSIRSTLPYDIDGLVYKV 306 YE L+ ++ LGF V N I+ YN+ +R L Y +DGLV K Sbjct: 223 KDYERLEFLKTLGFDVVNYTLFKKNEEDILKLKDYIFSYNQ--EVRPFLSYKVDGLVIKA 280 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + L+ LG ++ P+W + KF ++A T+L D I++G++G LTPVA EPV I G Sbjct: 281 NSLELRDSLGNTSKYPKWSSAFKFENEEAITKLKDCIIEVGKSGQLTPVALFEPVQIDGI 340 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I+ ATL N +K +DI++GD V+V RA +VIPK+ I +R + + Sbjct: 341 TISKATLSNFKNVK-----------DKDIKIGDMVVVARANDVIPKIEHSIKEDRTGEEK 389 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P FCP+C +V++ H C AQ ++ HFVS+ + +I+GL Sbjct: 390 EIEIPKFCPVCNEPIVKE---------NVHYFCVNDDCPAQIEGKIIHFVSKKSLDIDGL 440 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++ + F D I DIF L+ ++ + D V+NL ++I + Sbjct: 441 GEESIKLFL---DNGL-ISSIIDIFYLKDKKDDLLKL----DKYADKKVSNLLENIEASK 492 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 SL + + L I+ +G ++ LA ++S +N I NI + + S++ + G+ Sbjct: 493 QASLSKILHGLSIKLIGGRASKELANKFISMKN----ILNISKNEEEFKQSILSINNFGE 548 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQR 663 ++ +V F+++ RNI + L+ EV + V+ E + K +V TG R Sbjct: 549 EMSNNLVLFFKDERNIELINKLM-EVGFKMEEQIVKVNEEENMLTGKTVVITGKFTDFTR 607 Query: 664 HKAQEYV-TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + E + + G S +S+KTD +I GD GSK KA +LGVK++ E++ L Sbjct: 608 EELTEKIENEFGGKCSKSVSKKTDFLIYGDKAGSKYNKALELGVKLITEKELL 660 >gi|212696137|ref|ZP_03304265.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM 7454] gi|212676766|gb|EEB36373.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM 7454] Length = 668 Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 209/707 (29%), Positives = 351/707 (49%), Gaps = 78/707 (11%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGG 80 E++YH YY +PI+ D EYD L + +L E+ G P ++GG Sbjct: 18 ELNYH---YYTLDEPIVSDGEYDKL----------YDELRELENSTGYINAFSPTQRVGG 64 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR----FWQKKDD--NSIFFTLEPKI 134 + K H S +K NI+ L+ +I R + + DD + F E K Sbjct: 65 TILDKFEKHFHITRLYSQDKSQNIDQLKDWIIRTKKLRDQYNNSHDDKLEKLEFLTEYKF 124 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + YE G A+ RG+G GEDV+ + IPTIP + ++E++GE + Sbjct: 125 DGLTINLTYENGLLKTASTRGNGIVGEDVTKQVLTIPTIP--TKIKEKSLLEIQGEAVMP 182 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253 + N+E P N RNAA+G +R L+ + R L + + + S F K Sbjct: 183 LSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTRKRNLKAYFYQISTNSLDF-KT 237 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + + L + PV + F IV + +K R + DG+V KV++ Q+ Sbjct: 238 EEDKLNFLEEQKLPVYPYKKLIKNFDEIVKEIDYIKEERHHIDVLTDGVVIKVNDVKTQE 297 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG + PRW I++K+ ++ +T+LLD+ +GRTG +TP A LEPV+ G + ATL Sbjct: 298 VLGYTNKFPRWSIAYKYDPEEYTTKLLDVVWNVGRTGKVTPSAILEPVDFSGVTVQRATL 357 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 +N D ++R + +++G +V ++R+ +VIP+++ +V+E + P+ Sbjct: 358 NNYD---------DILR--KKVKIGSQVFIRRSNDVIPEILG-VVDENQENTVEIKKPTK 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S ++ H C ++C+ Q R+ HF SRDA +IEGL ++ ++ Sbjct: 406 CPYCHSELIEG---------NVHIYCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTVE 456 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F D I+ D++ L+ + N+ F + NL +I + L Sbjct: 457 LFINELD----IKEIYDLYDLKYED------LINLESFKEKKTNNLLQAIENSKKCDLNH 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI+++GI +VG + AR LA+ Y S +N A +D L+ V +G+ + I Sbjct: 507 FIYAIGIPNVGVKTARDLAEKYKSLENLRN------AKEDD----LVEVEDIGEKTSHDI 556 Query: 613 VEFYQNPRNIC-AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 VEF+ N +NI +++ LL++ E VS+ +E K+V TG+++ +R+ ++ + Sbjct: 557 VEFF-NDKNIKESIDKLLEKGIKIKKIEESEVSNSLEGMKIVITGSIENYKRNDIKKLIL 615 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFL 717 V++ +S+ TD+++ G+ PGSK EKA QLG+K++ NEE F F+ Sbjct: 616 DHNGDVTSSVSKNTDLVLCGEKPGSKKEKADQLGIKVLENEELFEFI 662 >gi|329937546|ref|ZP_08287104.1| DNA ligase [Streptomyces griseoaurantiacus M045] gi|329303422|gb|EGG47309.1| DNA ligase [Streptomyces griseoaurantiacus M045] Length = 697 Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 214/727 (29%), Positives = 339/727 (46%), Gaps = 91/727 (12%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY + D YD L R A P+ P P K+ G V H++ Sbjct: 21 AYYADGTSALDDEAYDRLVRGIAAWEADHPEQVL---PGSPTGKVAG--GAVEGDVPHTV 75 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 LSL+ +++ E+ + + R + + F++EPK+DG + RY KG+ Sbjct: 76 AMLSLDNVFSPEEFTAWTASLARRAGHEVER---FSVEPKLDGLAVAARYTKGRLERLIT 132 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG +GEDVS I I +P + L P +EVRGEV ++ F N+ A G +P+ Sbjct: 133 RGDGTAGEDVSHAIGTIEGLP--VELAEPVTVEVRGEVLMTTAQFEHANEVRTAHGGQPF 190 Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGL----GKTSEIFAKGQYEMLQKM--RCLGFP 267 ANPR A++G LR T + FF +GL G + + + E ++ R + Sbjct: 191 ANPRGASAGSLR-ARERAYTVPMTFFGYGLLPLPGTDTALATRLADEAHSELMTRAAAYG 249 Query: 268 VNNGV------RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 +N A T ++ E+ ++R+ LP+ IDG+V K D + Q+ G +R+ Sbjct: 250 INTTATTAVPGSTAGTVTEVLDRVREIAALRAELPFGIDGIVVKADLAADQRAAGSGSRA 309 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++K + TRLL+++ +GRTGI+ P A LEPV I GA IT ATLHN I Sbjct: 310 PRWAIAYKLPAVEKITRLLEVEWNVGRTGIIAPRAVLEPVEIDGATITYATLHNPADIT- 368 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 RD+R+GDRV+V RAG+VIP+V + + R + QP FP+ CP C + + Sbjct: 369 ----------RRDLRLGDRVMVHRAGDVIPRVEAPVAHLRTGEEQPIVFPAVCPRCGAGI 418 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 TG+ RC G C + L + RD +IEGLG ++ A Sbjct: 419 ------DTGE--QRWRCENGRNC--HLVAALSYAAGRDQLDIEGLGHTRVVQLVD----A 464 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERFIFSLG 558 + AD+F+L R Q +LG G+ S NL ++ + L R + +LG Sbjct: 465 GLVTDLADLFSLTREQ---------LLGLERMGETSTDNLLAALETAKGRPLARVLCALG 515 Query: 559 IRHVGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDWLSLIR-----VPLVGDIIA 609 IR G ++R +A+++ + + A+ + + + S++ PL+ ++A Sbjct: 516 IRGTGRSMSRRIARHFATMDHIRAADAEAMRRVEGIGTEKAPSIVAELAELAPLIDRLVA 575 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL---------------VF 654 + N A +E P+ G ++ E + Sbjct: 576 AGV-----NMTEPGATPPAPEE--PATGEQAEDTRGGAEAAEESPGGPLAGMTVVVTGAM 628 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG L+K+ R++ E V Q G S+ +SRKT +++ G+ GSK KA+ LG+++ E+F Sbjct: 629 TGRLEKLSRNRMNELVEQAGGRSSSSVSRKTTLVVAGEGAGSKRAKAESLGIRLATPEEF 688 Query: 715 LFLLQQY 721 LL + Sbjct: 689 AALLADH 695 >gi|154507531|ref|ZP_02043173.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC 17982] gi|153799320|gb|EDN81740.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC 17982] Length = 777 Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 168/487 (34%), Positives = 262/487 (53%), Gaps = 27/487 (5%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+ + E R + L I+ YY P + D++YD + R + I +P L Sbjct: 3 PMADSTFETTRDRYNDLVDRINEARAAYYDRDSPTLADADYDRMYREVEEIEERYPQLRG 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++ P +GG ++ +V H +SL+ ++++E+L + TR+ D + Sbjct: 63 ADSPT---MSVGGSVDSGFSEVRHLAQMMSLDDVFSLEELAGWETRMAEATGISD---LE 116 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 T E K+DG I + YE G+ V AA RGDG+ GEDV+A R I +IP+ LS +P IEV Sbjct: 117 MTTEVKVDGLSINLLYENGRLVRAATRGDGYVGEDVTANARTIASIPQTLSGTVPTRIEV 176 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-- 244 RGEVY DF A N+ + G K + N RNAA+G LR+ +P + R L HG+G Sbjct: 177 RGEVYFPVADFAAFNEARVEAGEKTFVNARNAAAGSLRQKDPAETAKRPLAMVAHGIGFV 236 Query: 245 KTSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + E F + Q +++R G PV+ R I E+ R L ++IDG+ Sbjct: 237 EAGEDFTEPITQMGWYEQLRDWGLPVSPYTRVLTGRKAIEERIAELGEKRHDLEHEIDGV 296 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V K+++ LQ+ LG +R+PRW ++KF ++ TRLLDI +Q+GRTG +TP +E V Sbjct: 297 VVKINDLDLQRSLGSTSRTPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMESVL 356 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G+ + ATLHN + +V R G + +GD V++++AG+VIP++V + + R+ Sbjct: 357 VAGSNVARATLHN---------AQEVARKG--VLIGDLVVLRKAGDVIPEIVAPVEDARN 405 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 +PF P+ CP C + +V++ K G + RC C AQ ERL H +R A + Sbjct: 406 GSERPFVMPTECPSCGTTLVQE---KEGDV--DLRCPNKGLCPAQITERLAHVGARSALD 460 Query: 483 IEGLGKQ 489 +EGLG + Sbjct: 461 VEGLGDE 467 Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 12/179 (6%) Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIR 600 + K ++ L R + +L IRHVG AR+LA+ +LS A + + A Sbjct: 602 LEKAKSQPLARVLVALSIRHVGPTAARALAEKFLSMDALRAASVEELSA----------- 650 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 V VG+ I +++ +++ ++ ++A + + S + +V +G + Sbjct: 651 VEGVGEEIGRSLRDWFTVDWHLEVLQAWARAGVRMADEAPEPTSDVLAGLTVVVSGAMPG 710 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R A+E +T G +S+KT +++ G GSK KA+ LGV ++ E+QF LL+ Sbjct: 711 YDREGAKEAITSRGGKAVGSVSKKTSLVVAGPGAGSKAAKAEALGVPVITEQQFTDLLE 769 >gi|238917130|ref|YP_002930647.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750] gi|238872490|gb|ACR72200.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750] Length = 669 Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 209/715 (29%), Positives = 353/715 (49%), Gaps = 64/715 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E S L++ I YH D YY +P I D EYD L R I P+ S+ P+ KI Sbjct: 5 QEYSELKKTIDYHMDRYYNQDEPEISDYEYDKLMIRLKEIEKEHPEWVTSDSPS---QKI 61 Query: 79 GGEMNLSL-FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + KVTH++P LS+E +++ + + ++ +++ F++E KIDG Sbjct: 62 GGTVKREAGVKVTHNVPMLSIEDVFSEDAVCAWVDKVHAMHP-----DCTFSVETKIDGL 116 Query: 138 MITIRYEK---GKFVY--AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 +++RY K GK A RGDG GEDV+A R + + +V+ L + +E+RGEVY Sbjct: 117 SMSLRYVKEADGKLHLHLAETRGDGLIGEDVTANARVVGDVLQVIDLPY-DSLELRGEVY 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIF 250 +S DF N+E + +K ANPRN A+G LR+L+ T IT R L F+ + + Sbjct: 176 MSHEDFEKYNEEQERLEKKTAANPRNLAAGTLRQLD-TSITKKRGLKIFIFNVQDGPDEI 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + ++ G PV + T +V +E+ +R LPYDIDG V K+D + Sbjct: 235 MESHGRGMDILKAAGVPVVYH-KICKTKEEVVRAIDEIGRMREELPYDIDGAVVKIDHIA 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL------EPVNIG 364 +++ ++ I++K+ ++ + DI + +GRTG LT +P + Sbjct: 294 FRQEFPAGSKYSSGHIAYKYPPEEKVIVMDDILVDVGRTGKLTFTGIFHDPETGKPARLC 353 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ ATLHN+DYI ++ + +G + ++GE+IPK+ + H Sbjct: 354 GTSVSRATLHNQDYITQMN-----------VGIGGEYKLFKSGEIIPKLNGCVKAPEHV- 401 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 F P CP+C ++R+ + A RC +C+AQ + +F S D NI Sbjct: 402 ---FEAPKVCPVCGEPLIREED------TADIRCVNP-SCAAQLSRTVAYFTSLDCMNIM 451 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG+ +D K I ADI+ L+ + K I+G + + L +I K Sbjct: 452 GLGETLVDALIKD----GYIHNYADIYALKEHRDELIEK--GIIG-KEKNTDKLLAAIEK 504 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + + +R + +LGIR+VG A+ + YY +N++ + L +P + Sbjct: 505 SKENTPDRLLTALGIRNVGKNTAKQIMNYY----------DNLMELADAGEEELQNIPDI 554 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G A+ I +F+ + NI +E L + +K +S ++E K +V TG+ R Sbjct: 555 GATTAKCIHDFFHDEANIELLERLKQSGLNMQMPEKKEMSDKLEGKTIVVTGSFDNYSRK 614 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +E + G + +S+KTD ++ G+ GSKL+KA LGVK++ ++F+ +++ Sbjct: 615 DMEELIVSNGGKATGSVSKKTDYLVAGEAAGSKLDKANSLGVKVLTIDEFMEMIK 669 >gi|71893614|ref|YP_279060.1| DNA ligase [Mycoplasma hyopneumoniae J] Length = 693 Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 220/743 (29%), Positives = 364/743 (48%), Gaps = 90/743 (12%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74 Q R ++ L ++I + YYQ P++ D YD R + + L E+ N P Sbjct: 7 QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 66 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---NSIFFTLE 131 K+G ++ KV HS P LSL K ++ E+L K W KK ++ F +E Sbjct: 67 SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEK--------WAKKASEILKTVTFFVE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRG 189 PKIDG +++ Y+ G + A RGDG GE+V I IP+ +N E +EVRG Sbjct: 119 PKIDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPK--KINYLEDLEVRG 176 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR---------------LNPTDITR 234 E+YI + F +L E K + NPRNAASGILRR L R Sbjct: 177 EIYIDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFR 231 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 YL F + L + Q++ + +R LGF VN ++ + + ++ + +K R Sbjct: 232 YLKSFFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDF 291 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L Y+IDG+V KV+EFS+ ++LG ++ P I+ KF + A T+LL I IGRTG +T Sbjct: 292 LNYNIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTY 351 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 A++EPV + G+ I++A L N YI+ L + + V +K+AGE+IP+++ Sbjct: 352 NAKIEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQII 400 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + N +P FS CP C S +V N ++G C C L+++ H Sbjct: 401 GSVHN--YPKTN-FSIVKNCPKCNSELV---NSESG---LDQFCQNQF-CPEIILQKIVH 450 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN---ILGFG 531 F S++A NIE L +++++ F + I DIF L+ + + ++ N +L Sbjct: 451 FCSKNALNIESLAQKRIEKFLEKG----LISSACDIFYLKDKLELIYERLSNKNQLLTKQ 506 Query: 532 DV-------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + S+ L + + + +NI R IF LGIR+VG + A+ L++Y + Sbjct: 507 NASQSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLD 566 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEK 641 N++ + +D G +I +++++++ N +N + +E + + ++ Sbjct: 567 FNLLKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQS 616 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 N + +G L K R + + + GA L++KTD +++G + GSK+EKA Sbjct: 617 NSWAS-----FAISGKLSK-PRDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKA 670 Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724 ++ G+KI+NE QF L++ T Sbjct: 671 KKAGIKIINEVQFFDLIKNSKKT 693 >gi|166215831|sp|Q4AA72|DNLJ_MYCHJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|144227540|gb|AAZ44349.2| DNA ligase [Mycoplasma hyopneumoniae J] Length = 692 Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 220/743 (29%), Positives = 364/743 (48%), Gaps = 90/743 (12%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74 Q R ++ L ++I + YYQ P++ D YD R + + L E+ N P Sbjct: 6 QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 65 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---NSIFFTLE 131 K+G ++ KV HS P LSL K ++ E+L K W KK ++ F +E Sbjct: 66 SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEK--------WAKKASEILKTVTFFVE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRG 189 PKIDG +++ Y+ G + A RGDG GE+V I IP+ +N E +EVRG Sbjct: 118 PKIDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPK--KINYLEDLEVRG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR---------------LNPTDITR 234 E+YI + F +L E K + NPRNAASGILRR L R Sbjct: 176 EIYIDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFR 230 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 YL F + L + Q++ + +R LGF VN ++ + + ++ + +K R Sbjct: 231 YLKSFFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDF 290 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L Y+IDG+V KV+EFS+ ++LG ++ P I+ KF + A T+LL I IGRTG +T Sbjct: 291 LNYNIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTY 350 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 A++EPV + G+ I++A L N YI+ L + + V +K+AGE+IP+++ Sbjct: 351 NAKIEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQII 399 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + N +P FS CP C S +V N ++G C C L+++ H Sbjct: 400 GSVHN--YPKTN-FSIVKNCPKCNSELV---NSESG---LDQFCQNQF-CPEIILQKIVH 449 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN---ILGFG 531 F S++A NIE L +++++ F + I DIF L+ + + ++ N +L Sbjct: 450 FCSKNALNIESLAQKRIEKFLEKG----LISSACDIFYLKDKLELIYERLSNKNQLLTKQ 505 Query: 532 DV-------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + S+ L + + + +NI R IF LGIR+VG + A+ L++Y + Sbjct: 506 NASQSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLD 565 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEK 641 N++ + +D G +I +++++++ N +N + +E + + ++ Sbjct: 566 FNLLKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQS 615 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 N + +G L K R + + + GA L++KTD +++G + GSK+EKA Sbjct: 616 NSWAS-----FAISGKLSK-PRDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKA 669 Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724 ++ G+KI+NE QF L++ T Sbjct: 670 KKAGIKIINEVQFFDLIKNSKKT 692 >gi|303252067|ref|ZP_07338236.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649049|gb|EFL79236.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 451 Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 157/416 (37%), Positives = 253/416 (60%), Gaps = 21/416 (5%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 +L +L Q++ ++ Y+ P++ D+EYD L + P+ ++ P ++G Sbjct: 17 QLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPT---QRVG 73 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH IP LSL+ ++ E+L F+ R+ + +D +++ F EPK+DG + Sbjct: 74 AKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESY-ITEDPHTLAFCCEPKLDGLAV 132 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED+++ IR I IP L++ N P +EVRGEV++ + F Sbjct: 133 SILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGF 192 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEIFAKGQ 254 ALN+ + G K +ANPRNAA+G LR+L+P ITR LN + G+ ++ + Sbjct: 193 EALNERALEKGEKTFANPRNAAAGSLRQLDPK-ITRQRPLVLNAYGIGVYESDDELPATH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ +F Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKSNF 416 >gi|37788926|gb|AAO65604.1| hypothetical NAD-dependent DNA ligase [Candidatus Phytoplasma solani] Length = 495 Score = 286 bits (733), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 177/525 (33%), Positives = 283/525 (53%), Gaps = 51/525 (9%) Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F LN + + P+ANPRNAASG LR+LN + R L+ F++ + + + Q Sbjct: 6 FEKLNQKQKENNKTPFANPRNAASGTLRQLNSKIVAQRNLSIFIYNIA-SPYLIKPTQLA 64 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+ + LGF VN A TF ++ K I+ T PYD DG+V KV+E +L +G Sbjct: 65 SLEFLIQLGFTVNPHYNLALTFEDLLVKIQNYKVIKDTQPYDTDGVVIKVNELALHALIG 124 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +++P+W I++KF K + + + DI Q+GRTG++TP+ ++ PV + G+LI+ LHN Sbjct: 125 ATSKAPKWAIAYKFPAKTSQSIVTDIIFQLGRTGMITPICQIMPVLVDGSLISKVVLHNY 184 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D+I +DIR+GD V V +AG VIP++++++ ++R + CP Sbjct: 185 DFI-----------SKKDIRIGDCVTVHKAGSVIPEILEVVASKRTNQKKTMMILQ-CPY 232 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C+S +V+ K GK+ + C C Q+++RL HFVS+ A +I LG++ + F Sbjct: 233 CKSNLVK----KEGKV--DYFCLND-DCYWQKIQRLIHFVSKKAMDINVLGEKTIITLFN 285 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ P+D++ L T ++ + FG + N+ +I + + LER +F Sbjct: 286 QH----LIQKPSDLYLL----HTHLNILQTLPSFGQKKINNILKAIEQSKTKPLERVLFG 337 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI+HVG +I++ L K LS + A +L +P +GD IA++I F+ Sbjct: 338 LGIKHVGEKISQVLVKNNLSLEKLA----------TIKLEALTAIPEIGDKIAKSINIFF 387 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSE-------IENKKLVFTGTLQKIQRHKAQEY 669 NPRNI ++ L +G +N ++ +KK+V TGTLQ R + + Sbjct: 388 NNPRNIAEIQKL-----QQLGVSFQNTINQTVVKKTFFSDKKIVLTGTLQNYTRLELTQI 442 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + Q+GA +S+ LS KTD +I G N GSKL KAQ+L + I+ E Q Sbjct: 443 LKQMGANISSSLSAKTDFLIAGTNAGSKLTKAQKLKISIIEEAQL 487 >gi|240047590|ref|YP_002960978.1| DNA ligase [Mycoplasma conjunctivae HRC/581] gi|239985162|emb|CAT05172.1| DNA ligase [Mycoplasma conjunctivae] Length = 673 Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 226/725 (31%), Positives = 361/725 (49%), Gaps = 81/725 (11%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG-P 74 + ++++ L ++I + Y+ P + D YD ++ + + + L E+ N P Sbjct: 5 EIKQQILQLRKKIENWNHEYFDLQNPSVDDLIYDEELKKLKILENKYYFLFSLEELNSSP 64 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK-----DDNSIFFT 129 +IG + + KV HS P LSL K ++IE+L K W KK +DN F Sbjct: 65 TQQIGAQTSTKFNKVYHSSPMLSLNKAYDIEELEK--------WVKKANLVGEDN---FY 113 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDV--SACIRAIPTIPRVLSLNIPEIIEV 187 +EPKIDG I + Y+KGK A RGDG GED+ +A A IP+ +N + +EV Sbjct: 114 VEPKIDGLSIALIYKKGKLSSALTRGDGLQGEDILHNALRIANKFIPK--QINYQQDLEV 171 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR------YLNFFVH 241 RGE++IS DF L ANPRNAASG+LRR+ T YL+ F++ Sbjct: 172 RGEIFISNQDFQILQQNS---NSSSLANPRNAASGLLRRIEKTSKNSKINDFDYLSCFIY 228 Query: 242 GL-----GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 L K I K Y L+K LGF +N A IV +++ +R L Sbjct: 229 NLVNPQLHKIKNI--KESYLFLEK---LGFHLNPLSSLAKGLTNIVKQIGKIEKLRPQLE 283 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 Y+IDG+V KV+++ + +QLG ++ P I+ KF ++ T+LLDI +GRTG +T A Sbjct: 284 YNIDGVVIKVNDYEIYEQLGRTSKFPHGAIAFKFEDQIVQTKLLDIFATVGRTGKITYNA 343 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 +LEP+N+ G ++ A L N YI+ L I + VLVK++GE+IP+ I Sbjct: 344 KLEPINLLGTTVSAAILPNYKYIENL-----------KIAINSDVLVKKSGEIIPQ---I 389 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 I + + A F S CP C +V + +G + AC A QL+++ HF Sbjct: 390 IASVQDHQATNFQKISHCPSCNFELV---DSPSG----IDQFCQNFACPAIQLKKIAHFC 442 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI-ENILGFGDVSV 535 S+ AFNI L ++++ + I+ DIF L+ ++ + + S+ Sbjct: 443 SKSAFNIASLAEKRIQTLIDTN----LIKNSCDIFFLKDNLDEMHSRFAKEKVKLKAKSI 498 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 TN + I + RFIF+LGI+++G + A+++AKY + Q IN A +D+ Sbjct: 499 TNFLNEIELSKKNDFYRFIFALGIKNIGLKAAKAIAKY---VGDVEQLINFDFAQLENDY 555 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 G I+ Q+++EF+ N N + K+V + +K+ T Sbjct: 556 -------DFGPIMVQSLLEFFANSNNQELLNC-FKKVDFAFKPTQKDFPVWAS---FAIT 604 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 G L K R + ++ + + GA + L++KT ++ G++ GSK+EKA+ + I+NEEQF Sbjct: 605 GKLSK-SRDQFEKIIVESGAQFDSNLNKKTTYLLAGESSGSKIEKAKAYNINIINEEQFW 663 Query: 716 FLLQQ 720 L+++ Sbjct: 664 DLIEK 668 >gi|299144358|ref|ZP_07037438.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518843|gb|EFI42582.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 664 Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 224/721 (31%), Positives = 357/721 (49%), Gaps = 91/721 (12%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 +EL +++YH YY PI+ D+EYD L + +L + ED N Sbjct: 8 RELIDKVNKLNYH---YYTLDDPIVSDAEYDEL----------YYELKKLEDENKIILAN 54 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK-----KDDNSIF 127 P ++GGE+ K TH P SL+K + E+LR + R + Q K+ ++ Sbjct: 55 SPTTRVGGEVLSKFEKHTHIAPLYSLDKAQSYEELRAWHERNLKALQSYRASGKNIENLK 114 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--II 185 + +E K DG I + YE G A+ RG+G GE++ I+ I +IP L IP ++ Sbjct: 115 YVVELKFDGLTINLTYEDGYLKMASTRGNGFIGEEILPQIKTIYSIP----LEIPYKGLM 170 Query: 186 EVRGEVYI---SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVH 241 EV+GE + S F +DE + N RNAA+G LR L+P +R L F + Sbjct: 171 EVQGEGLMPLSSLEKFNRTHDEQLK-------NARNAAAGALRNLDPKVTKSRNLTAFFY 223 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 +G + + EM + +R GF VN ++ ++ SIR +L IDG Sbjct: 224 NVGYIKDDRFRDDSEMKKFLRDNGFRVNENNYICKNLDEVIEKIEKIGSIRESLDILIDG 283 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+++ + LG + PRW I++KF K+ ST+LLD+ +GRT +TP A L+PV Sbjct: 284 VTIKINDMETRDLLGFTNKFPRWAIAYKFEAKEVSTKLLDVVWNVGRTSKVTPSAILQPV 343 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 IGG I ATL+N D I + IR+ RVL++R+ +VIP+++ + Sbjct: 344 EIGGVTIKKATLNNYDDIL-----------KKKIRINGRVLLRRSNDVIPEILGAL--PT 390 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDA 480 + P +CP C + + +D H C L+C Q + RL HF SRDA Sbjct: 391 EEETIEIEMPKYCPSCGTELFKD---------GVHIFCPNTLSCVPQLVSRLTHFASRDA 441 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 NIEGL + + D IR I+ L+++ K+E GF + NL Sbjct: 442 MNIEGLSEMTISKLLNELD----IREIPQIYELEKQD---LLKLE---GFKEKRANNLIS 491 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I + L FI+SLGI +VG + A LA + + +++ H D L+ Sbjct: 492 AIADSKIRPLPNFIYSLGINNVGIKTAYDLANKFKDF--------DLLRHAKYD--ELVD 541 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE--IENKKLVFTGT 657 + +G I A+ IVEF+ + +++ L + VSP + E++ E ++K++V TGT Sbjct: 542 IDDIGPITAKEIVEFFNDKHIEKSIDRLFELGVSP---KFEESTDEETYFKDKRIVITGT 598 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L I R + + + + GA +S+ +S+ TD +I G++ GSK +KA LG++I++E + L Sbjct: 599 LS-IPRKELENMLIKFGAKISSSVSKNTDFVIAGEDAGSKYDKAINLGIEIIDENKLREL 657 Query: 718 L 718 L Sbjct: 658 L 658 >gi|54020343|ref|YP_115627.1| DNA ligase [Mycoplasma hyopneumoniae 232] gi|81378764|sp|Q601T8|DNLJ_MYCH2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|53987516|gb|AAV27717.1| DNA ligase [Mycoplasma hyopneumoniae 232] Length = 692 Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 220/743 (29%), Positives = 363/743 (48%), Gaps = 90/743 (12%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74 Q R ++ L ++I + YYQ P++ D YD R + + L E+ N P Sbjct: 6 QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 65 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---NSIFFTLE 131 K+G ++ KV HS P LSL K ++ E+L K W KK ++ F +E Sbjct: 66 SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEK--------WAKKAREILKTVTFFVE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRG 189 PKIDG +++ Y+ G + A RGDG GE+V I IP+ +N E +EVRG Sbjct: 118 PKIDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPK--KINYLEDLEVRG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR---------------LNPTDITR 234 E+YI + F +L E K + NPRNAASGILRR L R Sbjct: 176 EIYIDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFR 230 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 YL F + L + Q++ +R LGF VN ++ + + ++ + +K R Sbjct: 231 YLKSFFYTLVNPEKHKINSQFDSTNFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDF 290 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L Y+IDG+V KV+EFS+ ++LG ++ P I+ KF + A T+LL I IGRTG +T Sbjct: 291 LNYNIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTY 350 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 A++EPV + G+ I++A L N YI+ L + + V +K+AGE+IP+++ Sbjct: 351 NAKIEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQII 399 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + N +P FS CP C S +V N ++G C C L+++ H Sbjct: 400 GSVHN--YPKTN-FSIVKNCPKCNSELV---NSESG---LDQFCQNQF-CPEIILQKIVH 449 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN---ILGFG 531 F S++A NIE L +++++ F + I DIF L+ + + ++ N +L Sbjct: 450 FCSKNALNIESLAQKRIEKFLEKG----LISSACDIFYLKDKLELIYERLSNKNQLLTKQ 505 Query: 532 DV-------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + S+ L + + + +NI R IF LGIR+VG + A+ L++Y + Sbjct: 506 NASQSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLD 565 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEK 641 N++ + +D G +I +++++++ N +N + +E + + ++ Sbjct: 566 FNLLKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQS 615 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 N + +G L K R + + + GA L++KTD +++G + GSK+EKA Sbjct: 616 NSWAS-----FAISGKLSK-PRDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKA 669 Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724 ++ G+KI+NE QF L++ T Sbjct: 670 KKAGIKIINEVQFFDLIKNSKKT 692 >gi|282882908|ref|ZP_06291513.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B] gi|281297319|gb|EFA89810.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B] Length = 664 Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 209/712 (29%), Positives = 355/712 (49%), Gaps = 71/712 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PN 72 QA +++ L +E++ + YY K +I D YD R D + + L + E+ + Sbjct: 2 QASEKMQKLVKELNRYGYYYYTLDKSLIDDKVYD---RMYDELVN----LEKEENIVLAD 54 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SI 126 P ++GG++ S K H P S+ K + ++LR +I + F + +++ + Sbjct: 55 SPTTRVGGQILKSFQKHKHLNPLYSMNKAQSFDELRDWIEKNKNFIENYNESHEDKLSEM 114 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 LE K DG I + YE G A RG+G GE +++ ++ I +IP LS++ ++E Sbjct: 115 ELILELKFDGLTINLTYEDGYLKMATTRGNGLIGEVITSQVKTINSIP--LSIDYKGLVE 172 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245 ++GE + L +E + N RNAA+G LR L+P + R L + + + Sbjct: 173 IQGEGLMP----LKSLEEYNKKASEKLKNARNAAAGALRNLDPKETKARNLTAYFYNVNY 228 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K EM + ++ GF V+ + +F + N + IR LP IDG+ K Sbjct: 229 IEGKNFKDDVEMKEFLKSQGFLVSKYNYKVKSFKDVQEKINYIADIRKDLPIQIDGVTIK 288 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +++F ++ L + PRW I++KF + A ++LL++ +GR+ +TP A +EPV I G Sbjct: 289 INDFKTREILSFTQKFPRWSIAYKFEAEIAESKLLEVVWNVGRSSKVTPSAIIEPVEIDG 348 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 I ATL+N D I + +R+ +L++R+ +VIP+++ ++ + D Sbjct: 349 VTIKRATLNNFDDI-----------NRKKLRLNSNILIRRSNDVIPEILGVLPS----DE 393 Query: 426 QPFSF--PSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFN 482 + F+ P CP C + + +D H C L+C Q + RL HF SRDA N Sbjct: 394 KTFAIKRPKVCPACGAHLFQD---------GVHIFCPNTLSCRPQLVSRLVHFASRDAMN 444 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I G ++ ++ F D IP DI+ L + K+E GF + NL ++I Sbjct: 445 INGFSEKTIEKFM---DELGLKEIP-DIYNL---KYDDIIKLE---GFKEKKTKNLLEAI 494 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 +N L FI+++GI +VG + AR LAK+Y N +A + + LI V Sbjct: 495 ENSKNPFLSNFIYAIGIANVGIKTARDLAKHY----------KNFMAFSKASFDDLIEVG 544 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G I A+ I+ F+ + ++ L + N + E K +V TG+L + + Sbjct: 545 DIGPITAKEIINFFADDHIKDGLQKLFSYGIKVVYEENLNKDLKFEGKTVVITGSLSR-K 603 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R + +E + GA VS+ +S+ TD +IVG+NPGSK +KA++L V+I+NEE+ Sbjct: 604 RKELEEELINNGAKVSSSVSKNTDFLIVGENPGSKYDKARELSVEILNEEEL 655 >gi|284931737|gb|ADC31675.1| DNA ligase [Mycoplasma gallisepticum str. F] Length = 715 Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 218/748 (29%), Positives = 361/748 (48%), Gaps = 98/748 (13%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE K+L+ E E YY S P + D YD R +P S Sbjct: 13 IEDLVKKLTKWEHE-------YYVLSNPSVSDEVYDNTYRTLLGYERKYPQYVLSY---S 62 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G ++ KV H LSL +N E+L F I + K++DN + LEPK Sbjct: 63 PTQRVGSSISNKFIKVKHDYLMLSLGNCFNFEELLNFNENIAKI-SKQEDNP--YVLEPK 119 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I++ Y G A RGDG GE V A I+ I TIP ++ I +I+ +RGEVY+ Sbjct: 120 IDGLSISLIYLDGVLSEALTRGDGVFGESVIANIKTIKTIPLKINTTIKKIV-IRGEVYV 178 Query: 194 SKNDFLALN---DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249 S DF A+N DE K +AN RN ASG LR ++ +++ R LN F + + E+ Sbjct: 179 SNQDFEAINASRDE-----DKKFANSRNYASGSLRNIDVSEVAKRKLNAFFYYIPNAYEL 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + QY+++Q+++ GF V ++ + + + E+++ ++ L Y IDG V K + F Sbjct: 234 GFETQYQVIQQLKEWGFNVAKEIKLFSNIKELYTSLKELENNKNKLDYRIDGAVIKYNNF 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + +G ++ P+W I++KFA Q T+L DI + +GRTG LT VA+L P+ + G++IT Sbjct: 294 KDYEIIGYTSKFPKWAIAYKFAPTQVQTQLKDIILNVGRTGKLTFVAQLAPIELEGSIIT 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN +YI L DIR+ D V + +A E+IPKV+ + +++R +A+ Sbjct: 354 YATLHNLEYINDL-----------DIRINDYVYLIKAAEIIPKVIGVNLDKRPNNAKKLE 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 F CP C +V+ P+ + C +QL+ L ++ S+ NIEGL + Sbjct: 403 FDYNCPSCHQPLVK--KPEEVDWYCIYD-----QCKQKQLQYLIYYCSKPIMNIEGLSES 455 Query: 490 QLDFFFKS------------------------------EDPAFSIRIPADIFTLQRRQQT 519 L FF + E+ F + DI+ L+R ++ Sbjct: 456 TLALFFNTKVNDVIRECNELITNQNVNEDLSLFKLLDNEEQTF-VNSVLDIYQLERYKEI 514 Query: 520 ----------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 S + ++ F D S L +SIN+ +N L R + +L I+++G A+S Sbjct: 515 IIKPWLKKGFSKSSLKYNFRFQDKSFDKLINSINESKNRELYRLLAALNIKYIGIATAKS 574 Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 +A Y +I+ + + +D++ R+ + I A ++ F+ + +N +E L Sbjct: 575 IANTY-------HDIDQLKSLTVEDYM---RLADISSITANSLFSFFSDEKNWELIEQ-L 623 Query: 630 KEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 K +S I + SS +KK V TG+ + ++ + + +S+ Sbjct: 624 KTLSINTKDEINNDLVDSSSIYYDKKFVITGSFSISRNDIIKKLSLKYKIKFVSGVSKNV 683 Query: 686 DIIIVGDNP-GSKLEKAQQLGVKIMNEE 712 D ++ G++P K+ +A+ L + I+ EE Sbjct: 684 DFVLAGNSPTAKKINQAKVLNIPIIQEE 711 >gi|313678467|ref|YP_004056207.1| DNA ligase (NAD+) [Mycoplasma bovis PG45] gi|312950136|gb|ADR24731.1| DNA ligase (NAD+) [Mycoplasma bovis PG45] Length = 654 Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 224/715 (31%), Positives = 367/715 (51%), Gaps = 73/715 (10%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + A++ + SL +I+ + YYQ +KP + D EYD + + +P+ + P Sbjct: 4 KNAKELIKSLVDKINQWNYEYYQLNKPSVSDLEYDKALWELEKLEKEYPEFVLDDSPTFK 63 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 L E K H P LSL K ++ +D++ FI I + + N F +EPK+ Sbjct: 64 LGSFASE---KFTKFIHKKPMLSLAKAYSYDDIKSFINNISKIVPAERIN---FNIEPKV 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + Y+KGK V A RGDG GEDV+ I I +IP+++ N +EVRGEV+IS Sbjct: 118 DGLSIALHYKKGKLVKAVTRGDGTEGEDVTENIYQIKSIPKLI--NYLNDLEVRGEVFIS 175 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 K++F +N+ RNAASG LR+L+ T + R L+ F++ + + Sbjct: 176 KDNFKKINESNNFANA------RNAASGTLRQLDSTIVAKRNLSAFLYEVVEPEMHNINY 229 Query: 254 QYEMLQKMRCLGFPVN--NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E L+ M+ L P N + V + +S + E I++ L YD DGLV K+++ + Sbjct: 230 QNEALEFMKKLNIPTNPFSKVVEIEELEEAISDFAE---IKNKLDYDSDGLVIKLNDLQM 286 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++LG+ ++ P+ I+ K+ + AS+ ++DI +GRTG +T +A + PV + + A Sbjct: 287 WEKLGKTSKFPKHSIAFKYDVEVASSTIVDILTSVGRTGKITYIANIHPVILNQTSVRAA 346 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN ++IK + +I + D V + +AGE+IPKV+ + ++ + D + Sbjct: 347 TLHNHNFIKDM-----------NININDEVNIIKAGEIIPKVISLKNSKNYVDY--YKKA 393 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CP C S ++ + + CT C + + + HF SR+ NI GLG + Sbjct: 394 TNCPSCNSELIE------FEGIVDQFCTND-ECPEKNVNNIYHFASRNCMNIVGLGLSTV 446 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL--GFGDVSVTNLYDSINKRRNIS 549 F+ P F I+ DIF+L + K E IL +G+ V N+ +SI +N + Sbjct: 447 KDFY----PKF-IKKIKDIFSLYKY------KSELILLPRYGEQKVDNILNSIESVKNKA 495 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR-VPLVGDII 608 + +F+LGI+H+G A+ ++ +Y NFA+ + ND LS ++ +G I Sbjct: 496 FSKVLFALGIKHIGQRAAKLISD---NYVNFAEIL-------NDSELSKLKSTKNIGPKI 545 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHE---KNVSSEIENKKLVFTGTLQKIQRHK 665 +++ E+ NP N + L SI +E K +S+ V TGTL + + H Sbjct: 546 IESLTEYINNPLNKDLLIYL-----DSIFNYEGKTKAISNIFSGYSFVITGTLSEPRSHF 600 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + + VSA +S +T ++ G GSKLEKA +LGVK++NEEQF LL+ Sbjct: 601 VK-IIEENSGSVSASVSGRTSYVLAGSEAGSKLEKAYKLGVKVINEEQFYKLLEH 654 >gi|166215830|sp|Q4A899|DNLJ_MYCH7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|144575353|gb|AAZ53640.2| DNA ligase [Mycoplasma hyopneumoniae 7448] Length = 692 Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 219/743 (29%), Positives = 364/743 (48%), Gaps = 90/743 (12%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74 Q R ++ L ++I + YYQ P++ D YD R + + L E+ N P Sbjct: 6 QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 65 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---NSIFFTLE 131 K+G ++ KV HS P LSL K ++ E+L K W KK ++ F +E Sbjct: 66 SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEK--------WAKKAREILKTVTFFVE 117 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRG 189 PKIDG +++ Y+ G + A RGDG GE+V I IP+ +N E +EVRG Sbjct: 118 PKIDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPK--KINYLEDLEVRG 175 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR---------------LNPTDITR 234 E+YI + F +L E K + NPRNAASGILRR L R Sbjct: 176 EIYIDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFR 230 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 YL F + L + Q++ + +R LGF VN ++ + + ++ + +K R Sbjct: 231 YLKSFFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDF 290 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L Y+IDG+V KV+EFS+ ++LG ++ P I+ KF + A T+LL I IGRTG +T Sbjct: 291 LNYNIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTY 350 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 A++EPV + G+ I++A L N YI+ L + + V +K+AGE+IP+++ Sbjct: 351 NAKIEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQII 399 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + N +P FS CP C S +V N ++G C C L+++ H Sbjct: 400 GSVHN--YPKTN-FSIVKNCPKCNSELV---NSESG---LDQFCQNQF-CPEIILQKIVH 449 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN---ILGFG 531 F S++A NIE L +++++ F + I DIF L+ + + ++ N +L Sbjct: 450 FCSKNALNIESLAQKRIEKFLEKG----LISSACDIFYLKDKLELIYERLSNKNQLLTKQ 505 Query: 532 DV-------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + S+ L + + + +NI R IF LGIR+VG + A+ L++Y + Sbjct: 506 NASQSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLD 565 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEK 641 N++ + +D G +I +++++++ N +N + +E + + ++ Sbjct: 566 FNLLKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQS 615 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 N + +G L K R + + + GA +++KTD +++G + GSK+EKA Sbjct: 616 NSWAS-----FAISGKLSK-PRDEYVRIIEESGASFHESVTKKTDFLLLGQSAGSKIEKA 669 Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724 ++ G+KI+NE QF L++ T Sbjct: 670 KKAGIKIINEVQFFDLIKNSKKT 692 >gi|72080605|ref|YP_287663.1| DNA ligase [Mycoplasma hyopneumoniae 7448] Length = 693 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 219/743 (29%), Positives = 364/743 (48%), Gaps = 90/743 (12%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN-GP 74 Q R ++ L ++I + YYQ P++ D YD R + + L E+ N P Sbjct: 7 QIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQSP 66 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---NSIFFTLE 131 K+G ++ KV HS P LSL K ++ E+L K W KK ++ F +E Sbjct: 67 SQKVGSKITSKFEKVAHSSPMLSLNKAYSNEELEK--------WAKKAREILKTVTFFVE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRG 189 PKIDG +++ Y+ G + A RGDG GE+V I IP+ +N E +EVRG Sbjct: 119 PKIDGIALSLFYQNGNLIKALTRGDGVFGENVLVNALKINDEFIPK--KINYLEDLEVRG 176 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR---------------LNPTDITR 234 E+YI + F +L E K + NPRNAASGILRR L R Sbjct: 177 EIYIDNSTFASLQLET-----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFR 231 Query: 235 YLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 YL F + L + Q++ + +R LGF VN ++ + + ++ + +K R Sbjct: 232 YLKSFFYTLVNPEKHKINSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDF 291 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L Y+IDG+V KV+EFS+ ++LG ++ P I+ KF + A T+LL I IGRTG +T Sbjct: 292 LNYNIDGVVVKVNEFSIYEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTY 351 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 A++EPV + G+ I++A L N YI+ L + + V +K+AGE+IP+++ Sbjct: 352 NAKIEPVTLAGSKISSAILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQII 400 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 + N +P FS CP C S +V N ++G C C L+++ H Sbjct: 401 GSVHN--YPKTN-FSIVKNCPKCNSELV---NSESG---LDQFCQNQF-CPEIILQKIVH 450 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN---ILGFG 531 F S++A NIE L +++++ F + I DIF L+ + + ++ N +L Sbjct: 451 FCSKNALNIESLAQKRIEKFLEKG----LISSACDIFYLKDKLELIYERLSNKNQLLTKQ 506 Query: 532 DV-------SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + S+ L + + + +NI R IF LGIR+VG + A+ L++Y + Sbjct: 507 NASQSMQIKSIMKLLNEVERAKNIDFYRLIFGLGIRNVGLKAAKILSRYASNLSELRNLD 566 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEK 641 N++ + +D G +I +++++++ N +N + +E + + ++ Sbjct: 567 FNLLKNQHD----------FGPVIIESLIDYFNNQKNSEQLNCLETVGFNFKTTFLTNQS 616 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 N + +G L K R + + + GA +++KTD +++G + GSK+EKA Sbjct: 617 NSWAS-----FAISGKLSK-PRDEYVRIIEESGASFHESVTKKTDFLLLGQSAGSKIEKA 670 Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724 ++ G+KI+NE QF L++ T Sbjct: 671 KKAGIKIINEVQFFDLIKNSKKT 693 >gi|218678540|ref|ZP_03526437.1| NAD-dependent DNA ligase LigA [Rhizobium etli CIAT 894] Length = 274 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 130/269 (48%), Positives = 188/269 (69%) Query: 399 DRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458 D V+V+RAG+VIP+++D+++ +R +A + FP CP+C S VR++N KTGK+ + RC Sbjct: 1 DTVIVQRAGDVIPQILDVVMEKRTAEAGSYEFPRTCPVCGSHAVREVNEKTGKMDSVRRC 60 Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518 TGG C AQ E LKHFVSR+AF+IEGLG +Q+DFFF++EDP+ IR DIFTL++RQQ Sbjct: 61 TGGFICRAQATEHLKHFVSRNAFDIEGLGSKQIDFFFENEDPSLQIRTAPDIFTLEKRQQ 120 Query: 519 TSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ 578 S TK+ENI GFG VSV LY +IN+RR+I+L RFI++LGIRHVG A+ LA+ Y +Y+ Sbjct: 121 QSLTKLENIDGFGKVSVGKLYAAINERRSIALHRFIYALGIRHVGETTAKLLARSYNTYE 180 Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638 FA + + + W L + +G+++A+A+VEFY+ PRNI + L+ EV+P+ Sbjct: 181 AFATAMKEAAPLSGEAWNDLNAIEGIGEVVARAMVEFYKEPRNIEVINRLIGEVTPAEAE 240 Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 S + K +VFTG+L+K R +A+ Sbjct: 241 QPVTTGSPVAGKTVVFTGSLEKFTRDEAK 269 >gi|300813320|ref|ZP_07093675.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512591|gb|EFK39736.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 664 Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 209/712 (29%), Positives = 356/712 (50%), Gaps = 71/712 (9%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PN 72 QA +++ L +E++ + YY K +I D YD I +L + E+ + Sbjct: 2 QASEKMQKLVKELNRYGYYYYTLDKSLIDDKVYDR-------IYDELVNLEKEENIVLAD 54 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SI 126 P ++GG++ S K H P S+ K + ++LR +I + F + +++ + Sbjct: 55 SPTTRVGGQILKSFQKHKHLNPLYSMNKAQSFDELRDWIEKNKNFIENYNESHEDKLSEM 114 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 LE K DG I + YE G A RG+G GE +++ ++ I +IP LS++ ++E Sbjct: 115 ELILELKFDGLTINLTYEDGYLKMATTRGNGLIGEVITSQVKTINSIP--LSIDYKGLVE 172 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245 ++GE + L +E + N RNAA+G LR L+P + R L + + + Sbjct: 173 IQGEGLMP----LKSLEEYNKKASEKLKNARNAAAGALRNLDPKETKARNLTAYFYNVNY 228 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 K EM ++ GF V+ + +F + N + IR LP IDG+ K Sbjct: 229 IEGKNFKDDVEMKAFLKSQGFLVSKYNYKVKSFKDVQEKINYIADIRKDLPIQIDGVTIK 288 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +++F ++ L + PRW I++KF + A ++LL++ +GR+ +TP A +EPV I G Sbjct: 289 INDFKTREILSFTQKFPRWSIAYKFEAEIAESKLLEVVWNVGRSSKVTPSAIIEPVEIDG 348 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 I ATL+N D I + +R+ +L++R+ +VIP+++ ++ + D Sbjct: 349 VTIKRATLNNFDDI-----------NRKKLRLNSNILIRRSNDVIPEILGVLPS----DE 393 Query: 426 QPFSF--PSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFN 482 + F+ P CP C + + +D H C L+C Q + RL HF SRDA N Sbjct: 394 KTFAIKRPEVCPACGAHLFQD---------GVHIFCPNTLSCRPQLVSRLVHFASRDAMN 444 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I G ++ ++ F D IP DI+ L + K+E GF + NL ++I Sbjct: 445 INGFSEKTIEKFM---DELGLKEIP-DIYNL---KYDDIIKLE---GFKEKKTKNLLEAI 494 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 +N L FI+++GI +VG + AR LAK+Y ++ F++ A +D LI V Sbjct: 495 ENSKNPFLSNFIYAIGIANVGIKTARDLAKHYKNFMAFSK------ASFDD----LIEVG 544 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G I A+ I+ F+++ ++ L + N + E K +V TG+L + + Sbjct: 545 DIGPITAKEIINFFEDDHIKDGLQKLFSYGIDVVYEENLNKDLKFEGKTVVITGSLSR-K 603 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 R + +E + GA VS+ +S+ TD +IVG+NPGSK +KA++L V+I+NEE+ Sbjct: 604 RKELEEELINNGAKVSSSVSKNTDFLIVGENPGSKYDKARELSVEILNEEEL 655 >gi|229828351|ref|ZP_04454420.1| hypothetical protein GCWU000342_00409 [Shuttleworthia satelles DSM 14600] gi|229792945|gb|EEP29059.1| hypothetical protein GCWU000342_00409 [Shuttleworthia satelles DSM 14600] Length = 675 Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 206/706 (29%), Positives = 351/706 (49%), Gaps = 61/706 (8%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 +I+YH D YY K I D EYD L ++ A PD R P+ P KIGG Sbjct: 12 QINYHMDLYYNQDKTEISDYEYDQLMQQLKAAEAEHPDWVR---PDSPSQKIGGTTKREA 68 Query: 87 -FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEK 145 KV H++P LS+E +++ + + ++ ++ Q+ ++IF ++E KIDG +T+RY K Sbjct: 69 GVKVEHNVPMLSIEDVFDFQSVIDWVKKV----QEMHPDAIF-SVEQKIDGLSMTLRYRK 123 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205 G+ A RGDGH GEDV+ RAIP +P L + P +E+RGEVY++++ F A N Sbjct: 124 GRLELAETRGDGHIGEDVTQNARAIPQVPDKLPITDP-YLELRGEVYMTRDRFEAYNARQ 182 Query: 206 IAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 + ANPRN A+G LR+L+P R L F+ + F + Q + L ++ + Sbjct: 183 EKDEKPLAANPRNLAAGTLRQLDPGITAKRGLALFIFNVQDGEPHFMRSQLDNLDRLSAM 242 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 G PV R A+ +++ E+ +R L YDIDG V K+D+ + +K A+ Sbjct: 243 GLPVTYHKR-ADNAKEVIAAIEEIGKMRDQLGYDIDGAVVKIDQIAYRKDFPAGAKYSAG 301 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL------ITNATLHNEDY 378 I++K+ ++ + I + +GRTG LT + V GG ++ ATLHN+DY Sbjct: 302 HIAYKYPPEERVVEMDQILVDVGRTGKLTFTGQFHDVKTGGPARLCGTSVSRATLHNQDY 361 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 I+ + I +G + ++GE+IPK+ + + P A F P FCP+C Sbjct: 362 IRQM-----------KIGIGGHYKLFKSGEIIPKLNGCV---KEPKAV-FKAPQFCPVCG 406 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 +L + G A RC +C AQ + +F R +I GLG+ +D + + Sbjct: 407 E----ELEQEEG--TADIRCVNP-SCPAQISRTIAYFAGRSCMDIAGLGQTLVDALCQEK 459 Query: 499 ---DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 F + DI+ L+ + + ++ ILG + + + +I ++ R + Sbjct: 460 ITGSETFYLTSYVDIYRLREHRDSLISR--GILG-KEKNTDKILAAIEDSKSQRPTRLLA 516 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGIR+VG A +L Y ++ +++ +D L +P +G+ A IV F Sbjct: 517 GLGIRNVGLSTAAALMAVY-------PDLMDLMHAGFED---LQGIPDIGEKTAADIVHF 566 Query: 616 Y--QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 + ++ R + A + + ++ E+ + + +V TG L ++R +A+ + + Sbjct: 567 FAHEDKRRMMAD---FRALGLTMRMPEEEKTEALAGLTIVVTGKLPGMERSEAKALIEKN 623 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G + +S KTD ++ G+ GSKL+KA+ LG+ +++EE L++ Sbjct: 624 GGKCTGSVSGKTDYLLAGEAAGSKLDKAKSLGIPVIDEEGLKALIE 669 >gi|297196402|ref|ZP_06913800.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486] gi|197720877|gb|EDY64785.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486] Length = 715 Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 210/734 (28%), Positives = 342/734 (46%), Gaps = 103/734 (14%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ + + D YD L R A PD P P K+ G ++ V H++ Sbjct: 34 AYYETGESTLDDDAYDRLVRGIAAYEQEHPD---ETSPASPTGKVAGGAVVA-GDVPHTV 89 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL+ +++ E L + + R + +++EPK+DG + RYE+G Sbjct: 90 PMLSLDNVFSAEQLVAWTASVERRTGPPVEE---WSVEPKLDGLAVAARYEEGALTRLIT 146 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG +GEDVS I I +PR L+ P +E+RGEV +++ F N + G P+ Sbjct: 147 RGDGTAGEDVSHAIGTIVGLPRTLAE--PVTLEIRGEVLMTEEQFERANTVRVEHGGAPF 204 Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGL------GK--TSEIFAKGQYEMLQKMRCLG 265 ANPRN A+G LR + T + FF +G G+ T + G +++ + LG Sbjct: 205 ANPRNGAAGTLRAKDRA-YTVEMTFFGYGALAVPASGEELTGRLGEWGHGRIMRYVADLG 263 Query: 266 FPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 + R T I + +E+ + R LP+ IDG+V K D + Q G +R+ Sbjct: 264 VHTADSTAVAPRVLTTTEAIQARIDEIAAARPGLPFGIDGIVIKADSAADQAAAGFGSRA 323 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW +++K + T LL ++ +GRTGI+ P A LEPV I G+ +T ATLHN Sbjct: 324 PRWAVAYKLPAVEKVTTLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVTYATLHN------ 377 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 + R RD+R GD+V+V +AG++IP+V + + R QP FP CP C S + Sbjct: 378 ---PADITR--RDLRTGDKVMVYKAGDIIPRVEAPVAHLRTGAEQPVVFPEVCPQCGSEI 432 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 D + + RC G C + + + RD +IEGLG ++ A Sbjct: 433 --DTSEQR------WRCVRGRDC--HVVASVSYAAGRDQLDIEGLGVTRVVQLVD----A 478 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERFIFSLG 558 +R AD+FTL R E +LG G+ S NL +I+ R L R +LG Sbjct: 479 GLVRDLADLFTLTR---------EQLLGLERMGETSTDNLLAAIDTARTRPLSRVFCALG 529 Query: 559 IRHVGAEIARSLAKYYLSYQNF-------AQEINNIIAHNNDDWLSLIR--VPLVGDIIA 609 +R G ++R +A+Y+ + ++ Q+++ I ++ + PL+ ++A Sbjct: 530 VRGTGRSMSRRIARYFAAMEHIRAADAETLQQVDGIGVEKARTVVAELEELAPLIDRLVA 589 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL----------------- 652 + N+ A +P R E +E E + Sbjct: 590 AGV--------NMTEPGA-----TPPAARAEDGAGAEGEGQDTGAGASTAGGAGPLSGMT 636 Query: 653 -----VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 TG L+K+ R++ E + + G S+ +S++T +++ G+N GSK +KA+QLG + Sbjct: 637 VVVTGAMTGALEKLSRNQMNELIERAGGKSSSSVSKRTSLLVAGENAGSKRDKAEQLGTR 696 Query: 708 IMNEEQFLFLLQQY 721 I ++F ++ + Sbjct: 697 IATPDEFAAIVADF 710 >gi|325846528|ref|ZP_08169443.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481286|gb|EGC84327.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 668 Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 207/707 (29%), Positives = 351/707 (49%), Gaps = 78/707 (11%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGG 80 E++YH YY +P++ D EYD L + +L E+ G P ++GG Sbjct: 18 ELNYH---YYTLDEPMVSDGEYDKL----------YDELRELENSTGYINAFSPTQRVGG 64 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR----FWQKKDD--NSIFFTLEPKI 134 + K H S +K NI+ L+ +I R + + DD + F E K Sbjct: 65 TILDKFEKHFHITRLYSQDKSQNIDQLKDWIIRTKKLRDQYNNSHDDKLEKLEFLTEYKF 124 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + YE G A+ RG+G GEDV+ + IPTIP + ++E++GE + Sbjct: 125 DGLTINLTYENGLLKTASTRGNGIVGEDVTKQVLTIPTIPT--KIKEKSLLEIQGEAVMP 182 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKG 253 + N+E P N RNAA+G +R L+ + R L + + + S F K Sbjct: 183 LSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTRKRNLKAYFYQISTNSLDF-KT 237 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + + L + PV + F IV + +K R + DG+V KV++ Q+ Sbjct: 238 EEDKLNFLEEQKLPVYPYKKLIKNFDEIVKEIDYIKEERHHIDVLTDGVVIKVNDVKTQE 297 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG + PRW I++K+ ++ +T+LLD+ +GRTG +TP A LEPV+ G + ATL Sbjct: 298 VLGYTNKFPRWSIAYKYDPEEYTTKLLDVVWNVGRTGKVTPSAILEPVDFSGVTVQRATL 357 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 +N D ++R + +++G +V ++R+ +VIP+++ +V+E + P+ Sbjct: 358 NNYD---------DILR--KKVKIGSQVFIRRSNDVIPEILG-VVDENQENTVEIKKPTK 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S ++ H C ++C+ Q R+ HF SRDA +IEGL ++ ++ Sbjct: 406 CPYCHSELIEG---------NVHIYCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTVE 456 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F D I+ D++ L+ + ++ F + NL +I + L Sbjct: 457 LFINELD----IKEIYDLYDLKYED------LIDLESFKEKKTNNLLQAIENSKECDLNH 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI+++GI +VG + AR LA+ Y S +N A +D L+ V +G+ + I Sbjct: 507 FIYAIGIPNVGVKTARDLAEKYKSLENLRN------AKEDD----LVEVEDIGEKTSHDI 556 Query: 613 VEFYQNPRNIC-AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 VEF+ N +NI +++ LL++ E VS+ +E K+V TG+++ +R+ ++ + Sbjct: 557 VEFF-NDKNIKESIDKLLEKGIKIKEIEESEVSNFLEGMKIVITGSIENYKRNDIKKLIL 615 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFL 717 V++ +S+ TD+++ G+ PGSK EKA QLG+K++ NEE F F+ Sbjct: 616 DHNGDVTSSVSKNTDLVLCGEKPGSKKEKADQLGIKVLENEELFEFI 662 >gi|291519153|emb|CBK74374.1| DNA ligase, NAD-dependent [Butyrivibrio fibrisolvens 16/4] Length = 651 Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 206/693 (29%), Positives = 345/693 (49%), Gaps = 56/693 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL-FKVTHSI 93 YY +P I D EYD L + A P+ P+ P KIGG KVTH + Sbjct: 4 YYNDDEPEITDFEYDQLMLQLKAAEKEHPEWVT---PDSPTQKIGGVAKREAGVKVTHDV 60 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG-----KF 148 P LS+E ++ E++ +++ ++ K F++E KIDG +T+RYEK K Sbjct: 61 PMLSIEDVFTKEEVVEWVKKV-----KAVHPDARFSVEAKIDGLSMTLRYEKDTTGKLKL 115 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 A RGDG GEDV+ IP + R L L + +++RGEVY+S DF N++ Sbjct: 116 KLAETRGDGIVGEDVTENALVIPDVNRYLDLPY-DNLQLRGEVYMSHEDFDRYNEDQELK 174 Query: 209 GRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266 G K ANPRN A+G LR+L+ +IT R L FV + + + + L + Sbjct: 175 GGKLAANPRNLAAGTLRQLD-ANITKQRGLKMFVFNVQQGPDELTVSHCKGLDILSEHKV 233 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 PV R + I++ +E+ R +DIDG V K+D+ + + A+ I Sbjct: 234 PVVYH-RICDNADEILNVIDEIGEKREEFEFDIDGAVVKIDQVAYRADFSTSAKYTNGHI 292 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++K+ ++ T+LLD+++ +GRTG + P A EP+ + G ++ ATLHN+D+I L Sbjct: 293 AYKYPPEEKETKLLDVELSVGRTGRVNPTAIFEPIRLCGTTVSRATLHNQDFIDEL---- 348 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 +I +GD ++V ++GE+IPK+ ++ ++R + P+ CP C V RD + Sbjct: 349 -------NIGIGDTIVVYKSGEIIPKIKEVKQDKRPAGTTTYKIPNICPACGGPVSRDAD 401 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ-LDFFFKSEDPAFSIR 505 A +CT +C AQ + +FVSRDA +I G G+ +D + I+ Sbjct: 402 ------TADMKCTNP-SCPAQLERHIINFVSRDAMDIRGFGEVYIIDLVRRG-----YIK 449 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 ADI++L+ ++ E I+G + + L I + + GI +VG Sbjct: 450 DIADIYSLKDKRDELIE--EGIIG-KEKNTDKLLGVIESSKENDAVKLFTGFGIPNVGKA 506 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A++L + ++I I+ + ++ L++V +G+I A++I ++ +P NI + Sbjct: 507 AAKALLGQF-------KDIEKIMELSEEE---LMQVNDIGEISAKSIYDYLHDPVNIDII 556 Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L + ++ + ++ V TGTL + R +AQE + G + +S+KT Sbjct: 557 GRLKAAGVNMVEEEKEGATDKLSGLTFVITGTLPTMGRKEAQELIELNGGKCAGSVSKKT 616 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ G+ GSKL+KA LGV +++EE L L+ Sbjct: 617 SYLVAGEAAGSKLDKANSLGVTVLDEEGLLSLI 649 >gi|227485017|ref|ZP_03915333.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172] gi|227237014|gb|EEI87029.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172] Length = 667 Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 200/703 (28%), Positives = 348/703 (49%), Gaps = 64/703 (9%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 E+ YH YY KP++ D EYD L + + + N P N++GG++ Sbjct: 16 ELDYH---YYTLDKPLVSDGEYDKLYNQLIKLQKNLAYVPE----NSPTNRVGGQILDKF 68 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS------IFFTLEPKIDGTMIT 140 K H LS +K + ++++++I R R + + S + F +E K DG I Sbjct: 69 EKHYHLTRLLSQDKAQSYDEIKEWIERCKRLKEAYESTSGERLPNLEFVMEYKFDGLTIN 128 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + YE G AA RG+G GE V A I +IP ++ ++E++GE + ++ Sbjct: 129 LTYEDGILKTAATRGNGIVGEQVKAQAETIRSIP--FTIKEKSLLEIQGEALMPLSELDR 186 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259 N E N RNAA+G +R L+ + R+L + + + T+ I K + EML Sbjct: 187 YNKE----NETQLKNARNAAAGAIRNLDTKETAKRHLTAYFYAV-PTNSINFKNEEEMLS 241 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 ++ + V+ ++ + I++ +K R TL DG+V K+++ Q+ LG Sbjct: 242 FLKEMKLNVHPYHKKVTSLDEIINELERIKEERKTLDVLTDGVVIKINDKKTQEVLGVTE 301 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 + PRW I+ KF ++ +T+LLD+ +GRTG +TP A LEPV+ G ++ ATL+N D I Sbjct: 302 KFPRWSIAFKFEPEEFTTKLLDVIWNVGRTGKVTPSAILEPVDFSGVTVSRATLNNYDDI 361 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 + + +++G V ++R+ +VIP+++ +V+E P P+ CP C S Sbjct: 362 E-----------RKKVKIGSDVFIRRSNDVIPEILG-VVDENQPGTIKIEKPTHCPYCHS 409 Query: 440 RVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 ++++ H C ++C+ Q L R++H+ SR+A +IEGL ++ + + Sbjct: 410 ELIQE---------KVHIVCPNSISCTPQLLARMEHYASRNAMDIEGLSEKTIGQLIEE- 459 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 SI+ DI+ L + K+E FG NL SI+ +N L+ FI+++G Sbjct: 460 ---LSIKEIYDIYDLTYDE---LIKLER---FGHKKAKNLLASIDNSKNRDLDAFIYAIG 510 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +VG AR LA + S+ N LI + +G+I + IVEF+ + Sbjct: 511 IPNVGERTARDLANKFKSFDKL----------RNATVDELIEIDDIGEITGENIVEFFHD 560 Query: 619 PRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + +++ LL K ++ + R + S +++ V TGT+ R ++ + GA V Sbjct: 561 KNIVESIDILLSKGINLNNPRENTSDSKKLDGINFVITGTIDGYNRDDIKKMLEDNGANV 620 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +S+ TDI++ G+ GSK +KA +L V+I +E+ L + Sbjct: 621 RGSVSKNTDIVLAGEKAGSKKDKAIELNVEIYEDEKLYSFLSE 663 >gi|294660617|ref|NP_853482.2| DNA ligase [Mycoplasma gallisepticum str. R(low)] gi|298286803|sp|Q7NAF8|DNLJ_MYCGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|284812280|gb|AAP57050.2| DNA ligase [Mycoplasma gallisepticum str. R(low)] gi|284930979|gb|ADC30918.1| DNA ligase [Mycoplasma gallisepticum str. R(high)] Length = 715 Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 218/747 (29%), Positives = 360/747 (48%), Gaps = 96/747 (12%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE K+L+ E E YY S P + D YD R +P S Sbjct: 13 IEDLVKKLTKWEHE-------YYVLSNPSVSDEVYDNTYRTLLGYERKYPQYVLSY---S 62 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G ++ KV H LSL +N E+L F I + K++DN + LEPK Sbjct: 63 PTQRVGSSISNKFIKVKHDYLMLSLGNCFNFEELLNFNENIAKI-SKQEDNP--YVLEPK 119 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 IDG I++ Y G A RGDG GE V A I+ I TIP ++ I +I+ +RGEVY+ Sbjct: 120 IDGLSISLIYLDGVLSEALTRGDGVFGESVIANIKTIKTIPLKINTTIKKIV-IRGEVYV 178 Query: 194 SKNDFLALN---DEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249 S DF A+N DE K +AN RN ASG LR ++ +++ R LN F + + E+ Sbjct: 179 SNQDFEAINASRDE-----DKKFANSRNYASGSLRNIDVSEVAKRKLNAFFYYIPNAYEL 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + QY+++Q+++ GF V ++ + + + E+++ ++ L Y IDG V K + F Sbjct: 234 GFETQYQVIQQLKEWGFNVAKEIKLFSNIKELYTSLKELENNKNKLDYRIDGAVIKYNNF 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + +G ++ P+W I++KFA Q T+L DI + +GRTG LT VA+L P+ + G++IT Sbjct: 294 KDYEIIGYTSKFPKWAIAYKFAPTQVQTQLKDIILNVGRTGKLTFVAQLAPIELEGSIIT 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN +YI L DIR+ D V + +A E+IPKV+ + +++R +A+ Sbjct: 354 YATLHNLEYINDL-----------DIRINDYVYLIKAAEIIPKVIGVNLDKRPNNAKKLE 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 F CP C +V+ P+ + C +QL+ L ++ S+ NIEGL + Sbjct: 403 FDYNCPSCHQPLVK--KPEEVDWYCIYD-----QCKQKQLQYLIYYCSKPIMNIEGLSES 455 Query: 490 QLDFFFK-------------------SEDPAF----------SIRIPADIFTLQRRQQT- 519 L FF SED + + DI+ L+R ++ Sbjct: 456 TLALFFNTKVNDVIRECNELITNQNVSEDLSLFKLLDNEEQTFVNSVLDIYQLERYKEII 515 Query: 520 ---------STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 S + ++ F + S L +SIN+ +N L R + +L I+++G A+S+ Sbjct: 516 IKPWLKKGFSKSSLKYNFRFQEKSFDKLINSINESKNRELYRLLAALNIKYIGIATAKSI 575 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 A Y +I+ + +D++ R+ + I A ++ F+ + +N +E LK Sbjct: 576 ANTY-------HDIDQLKNLTVEDYM---RLADISSITANSLFSFFSDEKNWELIEQ-LK 624 Query: 631 EVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 +S I + SS +KK V TG+ + ++ + + +S+ D Sbjct: 625 TLSINTKDEINNDLVDSSSIYYDKKFVITGSFSISRNDIIKKLSLKYKIKFVSGVSKNVD 684 Query: 687 IIIVGDNP-GSKLEKAQQLGVKIMNEE 712 ++ G++P K+ +A+ L + I+ EE Sbjct: 685 FVLAGNSPTAKKINQAKVLNIPIIQEE 711 >gi|320007473|gb|ADW02323.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331] Length = 698 Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 204/704 (28%), Positives = 343/704 (48%), Gaps = 76/704 (10%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D YD L R A P P G + GG ++ V H++P LSL+ +++ Sbjct: 39 DDAYDRLVRAIAAYEEEHPQEVLDASPTGKVA--GGAVS---GDVPHTVPMLSLDNVFSA 93 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164 E +F+T ++ +++EPK+DG + RY +G RGDG +GEDVS Sbjct: 94 E---QFVTWTASVERRIGRPVAAWSVEPKLDGLAVAARYRQGVLEQLITRGDGTAGEDVS 150 Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224 I + +P L P +E+RGE+ ++ F A N G P+ANPRN A+G L Sbjct: 151 HAIGTVLGLPE--RLGAPATLEIRGEILMTTEQFEAANAVRTEHGAAPFANPRNGAAGTL 208 Query: 225 RRLN-PTDITRYLNFFVHGL------GKTSEIFAKGQY-EMLQKMRCLGF--PVNNGV-- 272 R + P + + FF +G G+ ++ A + E+L+ + +G + V Sbjct: 209 RAKDRPYRV--EMTFFAYGALALPDSGELTDTLAGLPHSEVLEYVAGIGVHTAADTAVAP 266 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 R T + + ++ ++R++LP+ IDG+V K D + Q+ G R+PRW I++K Sbjct: 267 RTVTTVEEVQAGVEDIAALRASLPFGIDGIVIKADLAADQRDAGSGTRAPRWAIAYKLPA 326 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + TRLL ++ +GRTGI+ P A LEPV I G+ ++ ATLHN + R Sbjct: 327 VEKVTRLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVSYATLHN---------PADITR-- 375 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 RD+R+GD V+V +AG++IP++ + + R + QP FP CP C S + D + + Sbjct: 376 RDLRLGDHVMVYKAGDIIPRIEAPVAHLRTGEEQPIEFPEACPRCGSEI--DASEQR--- 430 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 RCT G C + + + + RD +IEGLG ++ A ++ AD+FT Sbjct: 431 ---WRCTRGRDC--RLVASISYAAGRDQLDIEGLGTTRVVQLVD----AGLVQDFADLFT 481 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L+R Q S ++ G+ S NL +I + L R +LG+R G ++R +A+ Sbjct: 482 LERDQLLSLDRM------GETSTDNLLAAIGAAASRPLSRVFCALGVRGTGRSMSRRIAR 535 Query: 573 YYLSYQNFA-------QEINNIIAHNNDDWLSLIR-----VPLVGDIIAQAI---VEFYQ 617 ++ S A Q+++ I + +++R PL+G ++A + Sbjct: 536 HFASMDRIAAADVEALQQVDGI---GKEKAAAVVRELQELAPLIGKLVAAGVNMTEPGAT 592 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 P A + E S + G ++ + TG L+K+ R++ E + + G Sbjct: 593 PPPEPGAAQEGEAEESATSGLPLAGMTVVVTG---AMTGALEKLSRNEMNELIERAGGKS 649 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 S+ +S++T +++ G+ GSK KA+ LGV+I E+F L+Q + Sbjct: 650 SSSVSKRTSLLVAGEKAGSKRTKAEDLGVRIAAPEEFAELVQAH 693 >gi|282864620|ref|ZP_06273675.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE] gi|282560559|gb|EFB66106.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE] Length = 709 Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 206/712 (28%), Positives = 340/712 (47%), Gaps = 79/712 (11%) Query: 42 IILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKI 101 ++ D YD L R A P + P G K+ G ++ V H++P LSL+ + Sbjct: 43 LLDDDAYDRLARGIAAYEAEHPQEVLAASPTG---KVAG--GAAVGDVPHTVPMLSLDNV 97 Query: 102 WNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGE 161 ++ E +F+T ++ +++EPK+DG + RY++G+ RGDG +GE Sbjct: 98 FSAE---QFVTWTASVERRIGRPVAAWSVEPKLDGLAVAARYQQGRLDRLITRGDGTAGE 154 Query: 162 DVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAAS 221 DVS I + +P LN P +EVRGE+ ++ F A N A G P+ANPRN A+ Sbjct: 155 DVSHAIGTVLGLPE--RLNEPATLEVRGEILMTDEQFDAANAARTAHGAAPFANPRNGAA 212 Query: 222 GILR-RLNPTDITRYLNFFVH------GLGKTSEIFAK-GQYEMLQKMRCLGF--PVNNG 271 G LR + P + + FF + G G ++E E+L+ + LG + Sbjct: 213 GTLRAKDRPYRV--EMTFFAYAALPLPGSGTSAETLTGLPHSEVLRHVAGLGVRTAADTA 270 Query: 272 V--RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 V R A T + + ++ R+TLP+ IDG+V K D + Q+ G R+PRW I++K Sbjct: 271 VAPRTAGTVEEVQAGVEDIAGQRATLPFGIDGIVIKADLAADQRDAGTGTRAPRWAIAYK 330 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 + TRLL ++ +GRTGI+ P A LEPV I G+ + ATLHN I Sbjct: 331 LPAVEKVTRLLGVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADIT--------- 381 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449 RD+R+GD+V+V +AG++IP++ + + R + +P FP CP C S + D + + Sbjct: 382 --RRDLRLGDQVMVYKAGDIIPRIEAPVAHLRTGEERPIEFPQSCPQCGSEI--DTSEQR 437 Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509 RC G C + + + + RD +IEGLG ++ A + AD Sbjct: 438 ------WRCVRGRDC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADFAD 485 Query: 510 IFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 +FTL+R E +LG G+ S NL ++ R+ L R +LG+R G + Sbjct: 486 LFTLER---------EQLLGLERMGETSTDNLLAAVETARSRPLSRVFCALGVRGTGRSM 536 Query: 567 ARSLAKYYLSYQNFA-------QEINNIIAHN--NDDWLSLIRVPLVGDIIAQAI--VEF 615 +R +A+++ + A Q ++ I PL+ ++A + E Sbjct: 537 SRRIARHFATMDRIAAADTEALQRVDGIGKEKAAAVVAELAELAPLIAKLVAAGVNMTEP 596 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL------VFTGTLQKIQRHKAQEY 669 P EA +E + + G E + + + TG L+K+ R++ E Sbjct: 597 GATPPPDPGTEA-DEERAGAEGVSEGAGGTGLPLDAMTVVVTGAMTGVLEKLSRNEMNEL 655 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + + G S+ +S++T +++ G+ GSK KA+ LGV+I ++F L+ + Sbjct: 656 IERAGGKASSSVSKRTSLLVAGEKAGSKRTKAEGLGVRIATPDEFAELVGSF 707 >gi|254673676|emb|CBA09270.1| DNA ligase [Neisseria meningitidis alpha275] Length = 423 Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 167/412 (40%), Positives = 242/412 (58%), Gaps = 33/412 (8%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L+ L +Y YY P + D+EYD L R +A+ P+L P+ P ++ Sbjct: 31 RHLTDLLNRYAYE---YYTLDAPSVPDAEYDKLFRELEALERNHPELKL---PDSPTQRV 84 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKK----DDNSIFFTLEP 132 GGE +V H +P LSL ++ +D +Y F Q+ D + + +EP Sbjct: 85 GGEPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEP 144 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K DG I++ Y G + AA RGDG +GEDV+ I+ + IP R+ N PE+IEVRGEV Sbjct: 145 KFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEV 204 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI 249 + K DF ALN G+KP+ANPRNAA+G LR+L+ + IT R L+FF + + + Sbjct: 205 LMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLD-SRITAQRKLHFFPYSVARQQGG 263 Query: 250 F-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYK 305 F A+ + L + LGF + NG F I +++Y M+ R LPY+IDG+V K Sbjct: 264 FVAEEHIQELAYFQALGFSLPNG--NFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMVVK 321 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ + Q +LG +R+PRW ++HKF ++A T + ID+QIGRTG +TPVARL+PV +GG Sbjct: 322 VNSLAQQHELGFISRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGG 381 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 +TNATLHN+D +V R +D+RVGD V+V+RAG+VIP+VV +I Sbjct: 382 VTVTNATLHNQD---------EVSR--KDVRVGDTVVVRRAGDVIPEVVRVI 422 >gi|203284458|ref|YP_002222198.1| DNA ligase [Borrelia duttonii Ly] gi|254781262|sp|B5RMA6|DNLJ_BORDL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|201083901|gb|ACH93492.1| DNA ligase [Borrelia duttonii Ly] Length = 669 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 207/706 (29%), Positives = 355/706 (50%), Gaps = 67/706 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + E+ SL I D YY S P + D YD R + + +P+ + P K Sbjct: 6 KDEILSLRDAIKKWDREYYVDSSPTVGDVTYDKALLRLQYLENRYPEYKTLDSPTL---K 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL----EPK 133 G ++ +V HS P LSL+K +++++L ++ ++ + +++ F + EPK Sbjct: 63 FGSDLLNDFKEVEHSYPILSLDKAYDVKELLLWVEKM-----SLEGSNLGFDMGISAEPK 117 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEV 191 IDG I + Y+ G A RGDG G +V +R I +P L I E +E+ RGE+ Sbjct: 118 IDGCSIVLYYKDGILEKALTRGDGRFGNNVIENVRTIKNVP----LCIGERVELVLRGEI 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 YI+K DFL +N + Y N RN SGILRR+N ++ + L+ FV+ + +S + Sbjct: 174 YITKKDFLKINHTL----DDSYINARNLTSGILRRINSREVVNFPLDIFVYDILYSS-LE 228 Query: 251 AKGQYEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ K++ GF +N + N I++Y E++ R Y+IDG+V KVD Sbjct: 229 LNTNHDAFDKLKHFGFKLNPFCKFFCGKNLGENIINYVKEIEEQRERFEYEIDGVVLKVD 288 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F L+ LG + P+W I++KF +A ++++DI +Q+GR+G +TPVA +E V I GA Sbjct: 289 DFRLRDVLGYTSHHPKWSIAYKFESLRAVSKVIDIVVQVGRSGKITPVANIEKVLIAGAF 348 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 IT+A+LHN+DYI D+ G + V D V + R G+VIP V+++V + Sbjct: 349 ITSASLHNQDYI---DSIG--------LNVKDVVAISRRGDVIP-AVELVVEKLS--VGN 394 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P++CP C+ ++++ AH + C + + +K+F S+ NI GL Sbjct: 395 FKIPNYCPSCKKSLIKE---------GAHLFCVNIHCPLKIMGHIKYFCSKKCMNIVGLS 445 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++F F I D++T ++ + GF V L SI + +N Sbjct: 446 EKTIEFLFNMN----FISSEIDLYTFD------FDRLIGLKGFNFKRVNKLKRSIEESKN 495 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 ++ + ++GI+ +G L + +F I+ + N + + L+ + +G+ Sbjct: 496 RPFKKLLLAMGIKDLGINTILLLIN--NNLNSF-DAISLLCQDNKNALVKLLDIKGIGER 552 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRH 664 IA I+ + N + I K + + N SS + KK TG+ + RH Sbjct: 553 IAFNIIRAF-NDKIILDKFNFFKGLGFKMQEDSINCVVDSSFLFGKKFCITGSFDEYPRH 611 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 + +T+ GA+ ++ +SR D ++VG +PG KL+KA LG+KI++ Sbjct: 612 VLIDKITKKGAIFNSSVSRYLDFLLVGKSPGLKLKKANNLGIKILS 657 >gi|203287992|ref|YP_002223007.1| DNA ligase [Borrelia recurrentis A1] gi|254781265|sp|B5RPQ2|DNLJ_BORRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|201085212|gb|ACH94786.1| DNA ligase [Borrelia recurrentis A1] Length = 669 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 205/706 (29%), Positives = 355/706 (50%), Gaps = 67/706 (9%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + E+ SL I D YY S P + D YD R + + +P+ + P K Sbjct: 6 KDEILSLRDAIKKWDREYYVDSSPTVGDVTYDKALLRLQYLENRYPEYKTLDSPTL---K 62 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL----EPK 133 G ++ ++ HS P LSL+K +++++L ++ ++ + +++ F + EPK Sbjct: 63 FGSDLLNDFKEIEHSYPILSLDKAYDVKELLLWVEKM-----SLEGSNLGFDMGISAEPK 117 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEV 191 IDG I + Y+ G A RGDG G +V +R I +P L I E +E+ RGE+ Sbjct: 118 IDGCSIVLYYKDGILEKALTRGDGRFGNNVIENVRTIKNVP----LCIGERVELVLRGEI 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIF 250 YI+K DFL +N + Y N RN SGILRR+N ++ + L+ FV+ + +S + Sbjct: 174 YITKKDFLKINHTL----DDSYINARNLTSGILRRINSREVVNFPLDIFVYDILYSS-LK 228 Query: 251 AKGQYEMLQKMRCLGFPVNNGVR---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ K++ GF +N + N I++Y E++ R Y+IDG+V KV+ Sbjct: 229 LNTNHDAFDKLKHFGFKLNPFCKFFCGKNLGENIINYVKEIEEQRERFEYEIDGVVLKVN 288 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 +F L+ LG + P+W I++KF +A ++++DI +Q+GR+G +TPVA +E V I GA Sbjct: 289 DFRLRDVLGYTSHHPKWSIAYKFESLRAVSKVIDIVVQVGRSGKITPVANIEKVLIAGAF 348 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 IT+A+LHN+DYI D+ G + V D V + R G+VIP V+++V + Sbjct: 349 ITSASLHNQDYI---DSIG--------LNVKDVVAISRRGDVIP-AVELVVEKL--SVGN 394 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P++CP C+ ++++ AH + C + + +K+F S+ NI GL Sbjct: 395 FKIPNYCPSCKKSLIKE---------GAHLFCVNIHCPLKIMGHIKYFCSKKCMNIVGLS 445 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++ ++F F I D++T ++ + GF V L SI + +N Sbjct: 446 EKTIEFLFNMN----FISSEIDLYTFD------FDRLIGLKGFNFKRVNKLKRSIEESKN 495 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 ++ + ++GI+ +G L + +F I+ + N + + L+ + +G+ Sbjct: 496 RPFKKLLLAMGIKDLGINTILLLIN--NNLNSF-DAISLLCQDNKNALVKLLDIKGIGER 552 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV---SSEIENKKLVFTGTLQKIQRH 664 IA I+ + N + I K++ + N SS + KK TG+ + RH Sbjct: 553 IAFNIIRAF-NDKIILDKFNFFKKLGFKMQEDSMNCVIDSSFLFGKKFCITGSFDEYSRH 611 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 + +T+ GA+ + +SR D ++VG +PG KL+KA LG+KI++ Sbjct: 612 VLIDKITKKGAIFHSAVSRYLDFLLVGKSPGLKLKKANNLGIKILS 657 >gi|116329958|ref|YP_799676.1| DNA ligase (NAD+) [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282269|sp|Q04W02|DNLJ_LEPBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116123647|gb|ABJ74918.1| DNA ligase (NAD+) [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 681 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 219/743 (29%), Positives = 356/743 (47%), Gaps = 82/743 (11%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K++ LS ++A+K ++ L EI +H YY ++P I D ++D L +R + Sbjct: 1 MSKKKKTYQNTLSEKEAKKVIAKLADEIRHHQYLYYVKNQPEISDFDFDQLFKRLRDLEE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP +D N P +G +++ K H +P LSL +N ++L W Sbjct: 61 EFPQF---KDLNSPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDDELLD--------WVN 109 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K D +++E KIDG I + YE G RG G G+DV+ IR + IP L Sbjct: 110 KTDPDGLYSVEWKIDGASIVLYYENGMLKNGVTRGSGGIGDDVTDNIRTVRNIP----LR 165 Query: 181 IPEIIEV--RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237 +PE I V RGEV+++ DF N+ ++ G+ YANPRN ++G +++ N D R L Sbjct: 166 LPEPITVYLRGEVFMTFKDFEEFNE--LSSGK--YANPRNLSAGSIKQKNSADTAKRPLR 221 Query: 238 FFVHGL---GKTSEIFAKGQYEMLQKMRCLGFPVN------NGVRQANTFHGIVSYYNEM 288 F + G T + K ++L K+ L FPV NG + A T + Sbjct: 222 IFTYDATFPGFTKKF--KTHQQILSKLEKLTFPVPPDTVFVNGSKIAETI-------KDF 272 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 K + TL + DGLV K+++ S + G + SPRW ++KF +R++DI +GR Sbjct: 273 KKKKDTLGFPTDGLVIKLNDISKRDAQGYTSHSPRWARAYKFDAIMKESRIVDITYAVGR 332 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TP +EPVN+ G +T ATLHN+DYI L + +G V V + GE Sbjct: 333 TGKITPRVEIEPVNLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGE 381 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 +IP V ++I P F P +CP C+++ ++ N + C C + Sbjct: 382 IIPAVEEVIT----PGKDVFKIPDYCPSCKTKTIKKEN------LVDLFCPNP-DCPDRV 430 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + + R +IEGLG +Q++F + D + IR AD++ L+ +++ K+ Sbjct: 431 KNGIIFYCQRKQMDIEGLGDKQIEFLY---DHGY-IRSIADLYDLKDQKE----KLMEEE 482 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI- 587 GFG+ S+ +++ I + + S+G+ +G ++ L ++ + I+ I Sbjct: 483 GFGEKSLAIIFNGIEHSKQKDFRFLLPSIGLPELGHKVTELLIEHGID------SIDEIL 536 Query: 588 -IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 IA + SL+ +P +G +A E + + R I + A LK + VS + Sbjct: 537 SIAKDKKRISSLLEIPGIGPSTIKAFEENFSDKR-ILKLIARLKNAGLKLKADPIKVSDQ 595 Query: 647 --IENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 + TG+ + Q R KA + V G + +S KT ++ G GSKLEKA + Sbjct: 596 QPFAGQSWCVTGSFENFQPRDKAMDLVVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANE 655 Query: 704 LGVKIMNEEQFLFLLQQYNTTLR 726 LG+ + NE+QFL LL+ + Sbjct: 656 LGIVVYNEKQFLDLLKSLKINFK 678 >gi|126347877|emb|CAJ89597.1| putative DNA ligase [Streptomyces ambofaciens ATCC 23877] Length = 702 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 203/702 (28%), Positives = 334/702 (47%), Gaps = 73/702 (10%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D+ YD L R A PD P+ P K+ G + V H++P LSL+ +++ Sbjct: 41 DATYDRLARGIAAWEAEHPDEVL---PDSPTGKVAG--GAAEGDVPHTVPMLSLDNVFSP 95 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164 E+ + + R ++ D F + PK+DG + RY G+ RGDG +GEDVS Sbjct: 96 EEFLAWTVSLARRTGREVDR---FVVGPKLDGLAVAARYRAGRLTRLITRGDGTAGEDVS 152 Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224 I + +P L+ P +E+RGE+ ++ F N+ G +P+ANPRNAA+G L Sbjct: 153 HAIGTVEGLPETLAE--PVTVEIRGEILMTTAQFEHANEVRTGHGGQPFANPRNAAAGTL 210 Query: 225 RRLNPTDITRYLNFFVHG---LGKTSEIFAK-----GQYEMLQKMRCLGFPVNNGVRQAN 276 R T + FF +G L +T + A Q +++ LG + G + Sbjct: 211 R-ARERAYTVPMTFFGYGMLPLPETDAVLAGRLDDLAQSDLMSMAAGLGVHTSAGTAVPD 269 Query: 277 ----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 T +V+ E ++R+ LP+ IDG+V K D + ++ G +R+PRW +++K Sbjct: 270 VVVTTPEQVVARVRETAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAVAYKLPA 329 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + TRLL+++ +GRTG++ P LEPV I G+ IT ATLHN I Sbjct: 330 VERITRLLEVEWNVGRTGVIAPRGVLEPVVIDGSTITYATLHNPADIT-----------R 378 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 R +R+GD V+V RAG+VIP++ + + R D +P +FPS CP C S D++ + Sbjct: 379 RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGDERPIAFPSVCPRCGS----DIDTSQERW 434 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 RC G C + L + RD +IEGLG ++ + A + AD+FT Sbjct: 435 ----RCAQGRNC--HLVASLAYAAGRDQLDIEGLGATRVVQLVE----AGLVADLADLFT 484 Query: 513 LQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 L R E +LG G S NL ++ + L R + +LG+R G ++R Sbjct: 485 LGR---------EQLLGLDRMGQTSTDNLLAALAAAKEQPLSRVLCALGVRGTGRSMSRR 535 Query: 570 LAKYYLSYQNF-------AQEINNIIAHNNDDWLSLIR--VPLVGDIIAQAI--VEFYQN 618 +A+++ + + Q++ I ++ I PL+ + A + E Sbjct: 536 IARHFATMDHIRAADADAMQQVEGIGPEKAPSIVAEIAELAPLIDKLAAAGVGMTEPGAT 595 Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL--VFTGTLQKIQRHKAQEYVTQLGAV 676 P + +A ++ + + TG+L+K+ R++ E V + G Sbjct: 596 PPPVTGADAEEEDGGSPVAAPGAAGPLAGMRVVVTGAMTGSLEKLSRNEMNELVERAGGH 655 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S+ +SRKT +++ G+ GSK KA+QLG+++ E+F L+ Sbjct: 656 SSSSVSRKTTLVVAGEGAGSKRAKAEQLGIRLATPEEFAALV 697 >gi|294786747|ref|ZP_06752001.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305] gi|315226368|ref|ZP_07868156.1| DNA ligase [Parascardovia denticolens DSM 10105] gi|294485580|gb|EFG33214.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305] gi|315120500|gb|EFT83632.1| DNA ligase [Parascardovia denticolens DSM 10105] Length = 868 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 228/812 (28%), Positives = 372/812 (45%), Gaps = 123/812 (15%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I + AL ++ A + + + + YY P+ DS YD + FP L Sbjct: 49 IDLVALPVDLAARLWAKVASWVEDDQIAYYVNDSPVSSDSAYDQRMLTLQRLEAQFPAL- 107 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 ++P P +++GG + +V H LSL+ ++++E+L+ + + R K + + Sbjct: 108 --DNPQSPTHRVGGTFSNDFTEVRHPSRMLSLDDVFSLEELKDWYQSLVRDLDWKAGDPL 165 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPE 183 T E KIDG + + Y G RGDG +GED++ +R I IP L+ +IP+ Sbjct: 166 PMTSEVKIDGLALNLVYRHGVLEQGLTRGDGVTGEDITMNVRTIAGIPSQLAGDPADIPD 225 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242 ++E+RGEV++ +DF LND+ A G+ +ANPRNAA+G LR+ +P R L+F+ HG Sbjct: 226 LVEIRGEVFMRFDDFRKLNDQAQAEGKPTFANPRNAAAGSLRQKDPRITARRRLSFYAHG 285 Query: 243 LG----------KTSEIFAKGQ-YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 LG + +I + Q Y++ + R P N V ++SYY + Sbjct: 286 LGILEWGPQAAVRHPDIERQSQAYDLYRTWRIPTSPHNRLVNSYVEILDMISYYGDH--- 342 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R + + +DG+V KVD+ +LQ++LG AR+PRW I++K+ ++ +T LLDI +Q+GRTG Sbjct: 343 RYDIEHPLDGIVVKVDQLALQRRLGATARAPRWAIAYKYPPEEVNTDLLDIRVQVGRTGR 402 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVA L PV + G+ + TLHN +K + I +GD V+V++AG+VIP Sbjct: 403 VTPVAHLRPVQVAGSTVARTTLHNPSEVK-----------HKGILIGDLVVVRKAGDVIP 451 Query: 412 KVVDIIVN---ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 ++V ++ ER + F P CP C + + + K G RC +C AQ Sbjct: 452 ELVGPVLAARPEREGRLREFVMPDRCPSCGTELAPE---KEGD--KDWRCPNVESCPAQL 506 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSED----------------------------P 500 R+ H SR AF+IE LG+Q E+ P Sbjct: 507 ANRVLHLASRQAFDIEHLGEQSALALTNPENNRPDSVDEYLPDIKEILIEEGEEPPVYLP 566 Query: 501 AFSIRIP----------ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 A +R+P AD+F L R + + + + ++S D+ K+R I Sbjct: 567 AEGLRLPPEQKPVVQSEADLFAL-RPEDLRSVRTWREIPLVEISERTDPDTGKKKR-IRK 624 Query: 551 ERFIFSLGIRHVG----AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL--V 604 R L + + +SLA+ S A A D W L+ + + V Sbjct: 625 NRGGSGLWTQVPAFFNLPKKGQSLAETQPSKTTLAMFEEFDKARQADLWRVLVALSIRHV 684 Query: 605 GDIIAQAIVEFYQ--------NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 G A+ I + ++ + + +++A+ E++ S+ + + + + Sbjct: 685 GAPTARLIAKHFKTLTAISQASEEELTSIDAIGDEIAKSVYQWFREAQDPSSWRGQILAA 744 Query: 657 TLQKIQRHKAQEYVTQ----LGAVV---------------SAILSR----------KTDI 687 Q KA E VT G V AI SR KT Sbjct: 745 WAQAGIGRKAAETVTDEQTLAGKTVVVTGTLEDFSRESAKEAIESRGGKAAGSVSKKTSY 804 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++VG N GSK KA+ LG+ +++E+QF LL+ Sbjct: 805 VVVGANAGSKASKAEALGIPMLDEDQFKTLLE 836 >gi|227499502|ref|ZP_03929609.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098] gi|227218381|gb|EEI83632.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098] Length = 666 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 203/716 (28%), Positives = 355/716 (49%), Gaps = 70/716 (9%) Query: 18 RKELSSLEQ---EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 R+E+S L + E++YH YY +P++ D EYD L + + + + N P Sbjct: 4 REEISQLIEKINELNYH---YYTLDEPLVSDGEYDKLYDKLKKLENESGIVL----DNSP 56 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFF 128 +GG++ K H LS K + +L +I R R ++ +DN I F Sbjct: 57 TQIVGGQILDKFEKHYHLTKLLSQNKAQSYAELEDWIDRCQRLRKEYNDNHEDKLDEIEF 116 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E K DG + + YE GK AA RG+G GE++ A ++ I +IP L++ ++E++ Sbjct: 117 IMEYKFDGLTVNLTYENGKLTSAASRGNGVVGEEILAQVKTIKSIP--LTIKEESLLEIQ 174 Query: 189 GEVYISKNDFLALN-DEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKT 246 GE + ++ N D I + N RNAA+G LR L+ + R L + + + T Sbjct: 175 GEALMPLSELAKYNKDNEIQL-----KNARNAAAGALRNLDTRETARRNLTAYFYAV-PT 228 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + + K + +ML ++ GF ++ ++ + I+ ++ R + DG+V K+ Sbjct: 229 NNLDFKTEEDMLDFLKNQGFNIHPYHKKVHNLDEIIRELKFIEEERKKIDILTDGVVIKI 288 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ Q+ L + PRW I+ KF ++ +T L + +GRTG +TP A L+PV GA Sbjct: 289 NDKKTQEVLSNTNKFPRWSIAFKFEAEEYTTTLRKVVWNVGRTGKVTPSAILDPVEFSGA 348 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATL+N D ++R + I++G RV ++R+ +VIP+++ +V+E Sbjct: 349 TVSRATLNNYD---------DILR--KKIKIGSRVFIRRSNDVIPEILG-VVDENQEGTS 396 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P FCP C S ++++ H C ++C Q L R++HF SR+A +IEG Sbjct: 397 EIEKPKFCPYCSSELIQE---------NVHIVCPNSISCKPQLLARIEHFASRNAMDIEG 447 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 L ++ + D I DI+ L Q K+E FGD NL ++I Sbjct: 448 LSEKTIAQLMDELD----INEVDDIYDLTYEQ---LIKLER---FGDKKTKNLLEAIENS 497 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNNDDWLSLIRVPLV 604 + + L+ FI+++GI +VG +R LA + S+ A +++ L + + Sbjct: 498 KKVDLQHFIYAIGIPNVGERTSRDLANKFKSFDKLRASKVD-----------ELTDIDDI 546 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G+I A+ IVEF+ +P ++E LL + E N S + N V TGT++ +R Sbjct: 547 GEITAENIVEFFSDPNISKSIENLLAKGIEISKPKEDNNSDGLNNLTFVITGTIENYKRD 606 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + + G V+ +S+ TDI++ G+ GSK KA++L V+I +++ L++ Sbjct: 607 DIKNLIEKNGGKVTGSVSKNTDILLAGEKAGSKKTKAEELNVEIYEDQKLYDFLKE 662 >gi|171742735|ref|ZP_02918542.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC 27678] gi|283456203|ref|YP_003360767.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1] gi|171278349|gb|EDT46010.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC 27678] gi|283102837|gb|ADB09943.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1] Length = 897 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 175/502 (34%), Positives = 265/502 (52%), Gaps = 44/502 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +LS E A + + + + YY PI D+ YDA R A+ FP L Sbjct: 63 VSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPSL--- 119 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P P +++GG + V H +SL+ +++IE+LR + + R + + Sbjct: 120 DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPLPM 179 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEII 185 T E KIDG + + Y G RGDG +GED++ +R I TIP+ L+ +IPE + Sbjct: 180 TCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEGDIPEFV 239 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF ALN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG+G Sbjct: 240 EIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 299 Query: 245 KTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRS 293 + Q E G PV+ R+ +F I + YY E R Sbjct: 300 SLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREITSFTDILDMIDYYGEH---RG 356 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +T Sbjct: 357 DIEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVT 416 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L+PV + G+ ++ TLHN +V R G + +GD V+V++AG+VIP++ Sbjct: 417 PVAILKPVYVAGSTVSRTTLHN---------PFEVERKG--VLIGDTVVVRKAGDVIPEL 465 Query: 414 VDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP--KTGKLVAAHRCTGGLACSAQQ 468 V ++ R F P+ CP C + +L P K K + RC +C AQ Sbjct: 466 VGPVLERRKGREESLHAFVMPTHCPSCGA----ELAPAKKGDKDI---RCPNVESCPAQL 518 Query: 469 LERLKHFVSRDAFNIEGLGKQQ 490 ER+ + SR AF+IE LG Q Sbjct: 519 TERIINLASRKAFDIEHLGDQS 540 Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 133/294 (45%), Gaps = 21/294 (7%) Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 PI + D+N TGK + GG Q S + + L + +++ Sbjct: 615 APIIEIHETVDVN--TGKTKKTRKRVGGSGLWHQVPAFWTAPTSARKLSAKKLAELEVNG 672 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN---LYDSINKRRNISL 550 SE P +++ PAD ++ + S T + ++ N + D + K R++ L Sbjct: 673 AAVSEYPEYNV--PADAVVIREDTKVSRTGVTSVQPVYVRPAENTRKMLDEMEKARHVDL 730 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IR +G AR++A + S + I H + + LS I +G IA+ Sbjct: 731 WRVLVALSIRRLGPPTARTIATAFGSL--------DAIEHASVEELSAIDG--IGPEIAE 780 Query: 611 AIVEFY---QNPRNI-CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++V ++ P N V K + ++ + K +V TG+L R A Sbjct: 781 SVVTWFTAAHEPGNWRGTVLDAWKTAGVGVVAETNDLPQTLAGKTVVVTGSLVDFSRDSA 840 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +E + G + +SRKTD ++VG+N GSK KA++LG+ ++NE+QF LL Sbjct: 841 KEAIISHGGKAAGSVSRKTDWVVVGENAGSKAAKAEELGIPMLNEDQFKQLLSS 894 >gi|306822599|ref|ZP_07455977.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679] gi|304554144|gb|EFM42053.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679] Length = 897 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 175/502 (34%), Positives = 265/502 (52%), Gaps = 44/502 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +LS E A + + + + YY PI D+ YDA R A+ FP L Sbjct: 63 VSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPPL--- 119 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P P +++GG + V H +SL+ +++IE+LR + + R + + Sbjct: 120 DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPLPM 179 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEII 185 T E KIDG + + Y G RGDG +GED++ +R I TIP+ L+ +IPE + Sbjct: 180 TCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEDDIPEFV 239 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF ALN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG+G Sbjct: 240 EIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 299 Query: 245 KTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRS 293 + Q E G PV+ R+ +F I + YY E R Sbjct: 300 SLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREVTSFTDILDMIDYYGEH---RG 356 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +T Sbjct: 357 DIEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVT 416 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L+PV + G+ ++ TLHN +V R G + +GD V+V++AG+VIP++ Sbjct: 417 PVAILKPVYVAGSTVSRTTLHN---------PFEVERKG--VLIGDTVVVRKAGDVIPEL 465 Query: 414 VDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP--KTGKLVAAHRCTGGLACSAQQ 468 V ++ R F P+ CP C + +L P K K + RC +C AQ Sbjct: 466 VGPVLERRKGREESLHAFVMPTHCPSCGA----ELAPAKKGDKDI---RCPNVESCPAQL 518 Query: 469 LERLKHFVSRDAFNIEGLGKQQ 490 ER+ + SR AF+IE LG Q Sbjct: 519 TERIINLASRKAFDIEHLGDQS 540 Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 134/294 (45%), Gaps = 21/294 (7%) Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 PI + D+N TGK+ + GG Q S + + L + +++ Sbjct: 615 APIIEIHETVDVN--TGKIKKTRKRVGGSGLWHQVPAFWTAPTSARKLSAKKLAELEVNG 672 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN---LYDSINKRRNISL 550 SE P +++ PAD ++ + S T + ++ N + D + K R++ L Sbjct: 673 AAVSEYPEYNV--PADAVVIREDTKVSRTGVTSVQPVYVRPAENTRKMLDEMEKARHVDL 730 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IR +G AR++A + S + I H + + LS I +G IA+ Sbjct: 731 WRVLVALSIRRLGPPTARTIATAFGSL--------DAIEHASVEELSAIDG--IGPEIAE 780 Query: 611 AIVEFY---QNPRNI-CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++V ++ P N V K + ++ + K +V TG+L R A Sbjct: 781 SVVTWFTAAHEPGNWRGTVLDAWKTAGVGVVAETNDLPQTLAGKTVVVTGSLVDFSRDSA 840 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +E + G + +SRKTD ++VG+N GSK KA++LG+ ++NE+QF LL Sbjct: 841 KEAIISHGGKAAGSVSRKTDWVVVGENAGSKAAKAEELGIPMLNEDQFKQLLSS 894 >gi|228982993|ref|ZP_04143252.1| DNA ligase, NAD-dependent [Bacillus thuringiensis Bt407] gi|228777176|gb|EEM25484.1| DNA ligase, NAD-dependent [Bacillus thuringiensis Bt407] Length = 669 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 227/731 (31%), Positives = 359/731 (49%), Gaps = 88/731 (12%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IEQ K+L +E+ HD Y PII DSEYD + ++ P+ A D N Sbjct: 2 IEQKIKQL---REEVMKHD-LLYDEGTPIITDSEYDQMYYELVSLEEKHPEFA---DENS 54 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +I + SL K+ HS P LS +K ED I +F K DD I E Sbjct: 55 PTKRIYSVVVDSLKKIKHSTPMLSQDKGHTEED-------IVKFANKSDDEIIAGDKE-- 105 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 DG I ++Y G + A+ RGDG+ GEDV+ +R I +P+ +S +EVR E I Sbjct: 106 -DGLTIVLKYNNGIYYEASTRGDGYIGEDVTHTVRTITNLPKKISFK--GYLEVRAESVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAK 252 ++F E I V K Y +PRN SG +R LN R L+ L K I + Sbjct: 163 PFSEF-----ERINVDGK-YKSPRNLVSGSVRTLNANIAKERGLSIIAFDLVKAEGITFE 216 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSY---YNEMKSIRSTLPYDIDGLVYKV 306 E L+ ++ GF V NT GI + Y YN K +R T+P+ IDGLV K Sbjct: 217 KDTEQLEFLKEQGFNVVPYKVFKNTPEGIKELIQYCLTYN--KEVRPTIPHMIDGLVLKF 274 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + ++++ LG ++ PRW + KF A+T+LL+I +G++G +TP EPV I G Sbjct: 275 NNLAVRESLGYTSKFPRWGFAFKFDSLDATTKLLNIVETVGKSGQITPNGIFEPVEIDGV 334 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I A+L N D IK RDIR+GD ++V RA +VIP++V + R + Sbjct: 335 TIQKASLANYDNIK-----------ERDIRIGDTIVVARANDVIPQIVSAVTELRDGTEK 383 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP+C+ VV++ + H CSAQQ LKHFVSR+A NI+GL Sbjct: 384 EILPPTCCPVCKGEVVKEED-------NVHYFCINSTCSAQQERILKHFVSRNAMNIDGL 436 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + ++ F++ + +DI+TL + + K+ + GFG+ + + I + + Sbjct: 437 GAKTVETFYEKG----ILSSISDIYTL----KDNLDKLSVLRGFGEKKIQKMLSGIEESK 488 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 ++ L +F+++L I +VG+ + +AK + + ++ + + + + L+++ +G+ Sbjct: 489 HVPLSKFLYALAIPNVGSSTGKDIAKKFKTMRHLIELSKDPVVLKTE----LMKIDGIGE 544 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIG------RHEKNVSSEIENKKLVFTGTLQK 660 +A ++V +++ NI +E L SIG E S EIE K V TG+L K Sbjct: 545 TVASSMVSYFEESHNIELIEFLY-----SIGFTMMEEVEEIIASEEIEGKIFVITGSLSK 599 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVG------------DNPGSKLEKAQQLGVKI 708 R+ ++ + G VS +S KT+ +++G + SK + A + I Sbjct: 600 -PRNDIKKEIEARGGKVSGSVSAKTNFLVLGGYNHVTGELPEKETNSSKYKNAVKFECPI 658 Query: 709 MNEEQFLFLLQ 719 ++EE+ +Q Sbjct: 659 ISEEELFAKMQ 669 >gi|309800924|ref|ZP_07695056.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022] gi|308222460|gb|EFO78740.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022] Length = 885 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 175/502 (34%), Positives = 265/502 (52%), Gaps = 44/502 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +LS E A + + + + YY PI D+ YDA R A+ FP L Sbjct: 63 VSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPPL--- 119 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P P +++GG + V H +SL+ +++IE+LR + + R + + Sbjct: 120 DTPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVIRDLDWPESKPLPM 179 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEII 185 T E KIDG + + Y G RGDG +GED++ +R I TIP+ L+ +IPE + Sbjct: 180 TCEVKIDGLALNLVYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEDDIPEFV 239 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF ALN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG+G Sbjct: 240 EIRGEVFMRWDDFAALNGENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 299 Query: 245 KTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRS 293 + Q E G PV+ R+ +F I + YY E R Sbjct: 300 SLRWGAGRADRHDVINHQSEAYALYEKWGVPVSPHNREVTSFTDILDMIDYYGEH---RG 356 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +T Sbjct: 357 DIEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTDLLDITVQVGRTGRVT 416 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L+PV + G+ ++ TLHN +V R G + +GD V+V++AG+VIP++ Sbjct: 417 PVAILKPVYVAGSTVSRTTLHN---------PFEVERKG--VLIGDTVVVRKAGDVIPEL 465 Query: 414 VDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP--KTGKLVAAHRCTGGLACSAQQ 468 V ++ R F P+ CP C + +L P K K + RC +C AQ Sbjct: 466 VGPVLERRKGREESLHAFVMPTHCPSCGA----ELAPAKKGDKDI---RCPNVESCPAQL 518 Query: 469 LERLKHFVSRDAFNIEGLGKQQ 490 ER+ + SR AF+IE LG Q Sbjct: 519 TERIINLASRKAFDIEHLGDQS 540 Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 129/294 (43%), Gaps = 33/294 (11%) Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 PI + D+N TGK+ + GG Q S + + L + +++ Sbjct: 615 APIIEIHETVDVN--TGKIKKTRKRVGGSGLWHQVPAFWTAPTSARKLSAKKLAELEVNG 672 Query: 494 FFKSEDPAFSIRIPADIFTLQ---RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 SE P +++ PAD ++ + +T T ++ + + + D + K R++ L Sbjct: 673 AAVSEYPEYNV--PADAVVIREDTKVSRTGVTSVQPVYVRPAENTRKMLDEMEKARHVDL 730 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IR +G AR++A + S + I H + + LS I +G IA+ Sbjct: 731 WRVLVALSIRRLGPPTARTIATAFGSL--------DAIEHASVEELSAIDG--IGPEIAE 780 Query: 611 AIVEFY---QNPRNI-CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++V ++ P N V K + ++ + K +V TG+L Sbjct: 781 SVVTWFTAAHEPGNWRGTVLDAWKTAGVGVVAETNDLPQTLAGKTVVVTGSL-------- 832 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A LSRKTD ++VG+N GSK KA++LG+ ++NE+QF LL Sbjct: 833 ----VDFSATPPRSLSRKTDWVVVGENAGSKAAKAEELGIPMLNEDQFKQLLSS 882 >gi|116329438|ref|YP_799158.1| DNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122282782|sp|Q04XH0|DNLJ_LEPBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116122182|gb|ABJ80225.1| DNA ligase (NAD+) (contains BRCT domain type II) [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 681 Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 219/743 (29%), Positives = 356/743 (47%), Gaps = 82/743 (11%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K++ LS ++A+K ++ L EI +H YY ++P I D ++D L +R + Sbjct: 1 MSKKKKTYQNTLSEKEAKKVIAKLADEIRHHQYLYYVKNQPEISDFDFDQLFKRLRDLEE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP +D N P +G +++ K H +P LSL +N ++L W Sbjct: 61 EFPQF---KDLNSPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDDELLD--------WVN 109 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K D +++E KIDG I + YE G RG G G+DV+ IR + IP L Sbjct: 110 KTDPDGLYSVEWKIDGASIVLYYENGMLKNGVTRGSGGIGDDVTDNIRTVRNIP----LR 165 Query: 181 IPEIIEV--RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237 +PE I V RGEV+++ DF N+ ++ G+ YANPRN ++G +++ N D R L Sbjct: 166 LPEPITVYLRGEVFMTFKDFEEFNE--LSSGK--YANPRNLSAGSIKQKNSADTAKRPLR 221 Query: 238 FFVHGL---GKTSEIFAKGQYEMLQKMRCLGFPVN------NGVRQANTFHGIVSYYNEM 288 F + G T + K ++L K+ L FPV NG + A T + Sbjct: 222 IFTYDATFPGFTKKF--KTHQQILSKLEKLTFPVPPDTVFVNGSKIAETI-------KDF 272 Query: 289 KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGR 348 K + TL + DGLV K+++ S + G + SPRW ++KF +R++DI +GR Sbjct: 273 KKKKDTLGFPTDGLVIKLNDISKRDAQGYTSHSPRWARAYKFDAIMKESRIVDITYAVGR 332 Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TP +EPVN+ G +T ATLHN+DYI L + +G V V + GE Sbjct: 333 TGKITPRVEIEPVNLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGE 381 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 +IP V ++I P F P +CP C+++ ++ N + C C + Sbjct: 382 IIPAVEEVIT----PGKDVFKIPDYCPSCKTKTIKKEN------LVDLFCPNP-DCPDRV 430 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + + R +IEGLG +Q++F + D + IR AD++ L+ +++ K+ Sbjct: 431 KNGIIFYCQRKQMDIEGLGDKQIEFLY---DHGY-IRSIADLYDLKDQKE----KLIEEE 482 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI- 587 GFG+ S+ +++ I + + S+G+ +G ++ L ++ + I+ I Sbjct: 483 GFGEKSLAIIFNGIEHSKQKDFRFLLPSIGLPELGHKVTELLIEHGID------SIDEIL 536 Query: 588 -IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 IA + SL+ +P +G +A E + + R I + A LK + VS + Sbjct: 537 SIAKDKKRISSLLEIPGIGPSTIKAFEENFSDKR-ILKLIARLKNAGLKLKADPIKVSDQ 595 Query: 647 --IENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 + TG+ + Q R KA + V G + +S KT ++ G GSKLEKA + Sbjct: 596 QPFAGQSWCVTGSFENFQPRDKAMDLVVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANE 655 Query: 704 LGVKIMNEEQFLFLLQQYNTTLR 726 LG+ + NE+QFL LL+ + Sbjct: 656 LGIVVYNEKQFLDLLKSLKINFK 678 >gi|294790698|ref|ZP_06755856.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304] gi|294458595|gb|EFG26948.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304] Length = 815 Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 166/482 (34%), Positives = 263/482 (54%), Gaps = 58/482 (12%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY PI D+ YD + + FP L ++P +++GG + V H Sbjct: 50 AYYVNDSPISSDAAYDERMKTLQRLEAHFPQL---DNPQSLTHRVGGTFSNDFASVRHPS 106 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P +SL+ ++++++L+ + + + + T E KIDG + + Y KG Sbjct: 107 PMMSLDDVFSLQELKSWYQGVRDDLEWPSSQPLPMTCEVKIDGLALNLIYRKGILEQGLT 166 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 RGDG GED++ +R I +IP L+ +IP+++E+RGEV++ +DF LND+ G+ Sbjct: 167 RGDGIVGEDITMNVRTISSIPTQLTGKAEDIPDLVEIRGEVFMRFDDFTRLNDQAEREGK 226 Query: 211 KPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG--------QYEMLQKM 261 P+ANPRNAA+G LR+ +P +R+L+F+ HG+G S ++ +G Q + Sbjct: 227 APFANPRNAAAGSLRQKDPRITASRHLSFYAHGIG--SLVWPQGSNHPSIERQSQAYDLY 284 Query: 262 RCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 G PV+ RQA +F I +SYY E R ++ + +DG+V K+D+ +LQ++LG Sbjct: 285 AAWGIPVSTHTRQARSFTDITDMISYYGEH---RYSIEHALDGIVVKIDDLALQRRLGST 341 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 AR+PRW ++K+ ++ +T L+DI +Q+GRTG +TPVA L+PV + G+ ++ TLHN Sbjct: 342 ARAPRWATAYKYPPEEVNTDLIDITVQVGRTGRVTPVAHLKPVKVAGSTVSRTTLHN--- 398 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ----PFSFPSFC 434 + +V R G I +GD V+V++AG+VIP++V +V R PD + PF P C Sbjct: 399 ------AYEVERKG--ILIGDLVVVRKAGDVIPELVGPVVAAR-PDRKSQLRPFLMPKTC 449 Query: 435 PICQSRVVRDLNPKTGKLVAAH-------RCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P C G L+A RC +C AQ R+ H SR AF+IE LG Sbjct: 450 PSC------------GALLAPEKEGDKDIRCPNVESCPAQLANRVLHLASRQAFDIEHLG 497 Query: 488 KQ 489 +Q Sbjct: 498 EQ 499 Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 15/187 (8%) Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 +++ +K + L R + +L IRHVGA AR L++ + + Q +Q A D Sbjct: 632 MFEEFDKAKRADLWRVLVALSIRHVGAPTARLLSRKFKTLQALSQ------ASVED---- 681 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEA--LLKEVSPSIGRH--EKNVSSE-IENKKL 652 L++V VG+ IAQ+I ++ + R+ L + IG+ E+N + + + K + Sbjct: 682 LLQVDGVGEEIAQSIERWFSHARDPQDWRGKILRSWTAAGIGQQAAEENTAEQTLTGKTV 741 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TGTL+ R A+E + + G S +S+KT ++VG + GSK KAQ+LG+ +++E+ Sbjct: 742 VVTGTLEDFSRESAKEAIEERGGKASGSVSKKTSYVVVGASAGSKAVKAQELGIPMLDED 801 Query: 713 QFLFLLQ 719 QF LL+ Sbjct: 802 QFKALLE 808 >gi|153831457|ref|ZP_01984124.1| DNA ligase [Vibrio cholerae 623-39] gi|148873061|gb|EDL71196.1| DNA ligase [Vibrio cholerae 623-39] Length = 373 Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/401 (38%), Positives = 242/401 (60%), Gaps = 33/401 (8%) Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233 R+ + P +EVRGEV++ K F ALN + G K + NPRNAA+G LR+L+ + IT Sbjct: 2 RLQGADFPTRLEVRGEVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITA 60 Query: 234 -RYLNFFVHGLG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS 290 R L F+ + +G + E+ A Y+ +++ G P+ + + + ++Y ++ Sbjct: 61 QRPLAFYAYSVGVIEGGEL-ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQ 119 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R +L Y+IDG+V KVD+ LQ++LG AR+PRW I++KF ++ T L D++ Q+GRTG Sbjct: 120 RRQSLAYEIDGVVIKVDDIQLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTG 179 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVA+LEPV +GG ++NATLHN D I+ L + VGD V+++RAG+VI Sbjct: 180 AITPVAKLEPVFVGGVTVSNATLHNADEIERL-----------GVMVGDTVVIRRAGDVI 228 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P++V +++ R +A+ FP+ CP+CQS D+ G+ VA RC+GGL C AQ+ E Sbjct: 229 PQIVSVVLERRPENAKSIVFPTRCPVCQS----DVERVEGEAVA--RCSGGLICQAQRKE 282 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 LKHFVSR A ++EGLG + ++ E + PAD+F L+ + T ++ Sbjct: 283 ALKHFVSRKAMDVEGLGDKVIEQLVDRE----MVSTPADLFRLRAGELTILERM------ 332 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 G S N+ D++NK + +L +F+++LGIR VG A +LA Sbjct: 333 GPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLA 373 >gi|260202156|ref|ZP_05769647.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T46] gi|289444580|ref|ZP_06434324.1| DNA ligase, NAD-dependent [Mycobacterium tuberculosis T46] gi|289417499|gb|EFD14739.1| DNA ligase, NAD-dependent [Mycobacterium tuberculosis T46] Length = 517 Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 177/542 (32%), Positives = 280/542 (51%), Gaps = 37/542 (6%) Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +PE++EVRGEV+ +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L Sbjct: 1 MPEVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMI 60 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLP 296 HGLG ++ +R G PV+ A G+ + Y+ E R + Sbjct: 61 CHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVD 117 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 ++IDG+V KVDE +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A Sbjct: 118 HEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFA 177 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 + PV + G+ + ATLHN IK R G + +GD V++++AG+VIP+V+ Sbjct: 178 FMTPVKVAGSTVGQATLHNASEIK---------RKG--VLIGDTVVIRKAGDVIPEVLGP 226 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 +V R + F P+ CP C S + + K G A RC C Q ER+ H Sbjct: 227 VVELRDGSEREFIMPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVA 281 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR+ +IE LG + +++ I ++F L R T G + Sbjct: 282 SRNGLDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGK 337 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 L +++K + L R + +L IRHVG AR+LA + S ++ I A + D Sbjct: 338 RLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGS-------LDAIAAASTD--- 387 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 L V VG IA A+ E++ + V+ + +++V + +V TG Sbjct: 388 QLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTG 447 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L R A+E + G + +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F Sbjct: 448 SLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRR 507 Query: 717 LL 718 LL Sbjct: 508 LL 509 >gi|212715716|ref|ZP_03323844.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM 16992] gi|212661083|gb|EEB21658.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM 16992] Length = 891 Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 172/499 (34%), Positives = 267/499 (53%), Gaps = 40/499 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++S E A + + + + YY P+ D+ YDA R A+ FP L + Sbjct: 65 VSSMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARMRCLQALEAQFPSLDST 124 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +++GG + V H +SL+ ++++E+LR++ + R D + Sbjct: 125 QSPT---HRVGGTFSNDFASVRHPSRMMSLDDVFSLEELREWYDSVIRGLDWSDTKPLPM 181 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185 T E KIDG + + Y G RGDG +GED++ +R I TIP+ L+ +IPE + Sbjct: 182 TCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPEFV 241 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF LN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG+G Sbjct: 242 EIRGEVFMRWDDFNTLNRESEDAGRAPFANPRNAAAGSLRQKDPRITSTRRLSFYAHGIG 301 Query: 245 KTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRS 293 +G Q E + + G PV+ R+ TF I + YY E R Sbjct: 302 TLQWGAKRGDGHDIVNNQSEAYELYKKWGIPVSPHNREVTTFSQILDMIDYYGEH---RG 358 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +T Sbjct: 359 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 418 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L+PV + G+ ++ TLHN +V R G + +GD V+V++AG+VIP++ Sbjct: 419 PVAILKPVYVAGSTVSRTTLHN---------PFEVERKG--VLIGDTVVVRKAGDVIPEL 467 Query: 414 VDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 V ++ R + F PS CP C +++ K G RC +C AQ E Sbjct: 468 VGPVLERREGREDQLRRFVMPSQCPSCGAQLA---PAKEGD--KDIRCPNVESCPAQLTE 522 Query: 471 RLKHFVSRDAFNIEGLGKQ 489 R+ + SR AF+IE LG Q Sbjct: 523 RIINLASRKAFDIEHLGDQ 541 Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 15/187 (8%) Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 + D I+K R+ L R + +L IR +G AR +A N ++ I + D+ Sbjct: 711 MLDEIDKARHADLWRVLVALSIRRLGPPTARVIA-------NTLGSLDAIERASVDE--- 760 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSS---EIENKKL 652 L ++ +G IA+++V ++ + + + E + +G + +S+ +E K + Sbjct: 761 LSQIDGIGPEIAESVVTWFASAKEPGDWRGTVLEAWKAAGVGAEQVEISTLPQTLEGKTV 820 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG+L R A+E + G S +S+KTD +++G+N G+K KA++LGV ++NE+ Sbjct: 821 VVTGSLIDFSRDSAKEAIISRGGRASGSVSKKTDWVVIGENAGAKAAKAEELGVPMLNED 880 Query: 713 QFLFLLQ 719 QF LL+ Sbjct: 881 QFKILLE 887 >gi|310287227|ref|YP_003938485.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17] gi|309251163|gb|ADO52911.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17] Length = 900 Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 174/500 (34%), Positives = 262/500 (52%), Gaps = 41/500 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +LS E A + + + + YY P+ D+ YDA R + FP L Sbjct: 64 VSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL--- 120 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P P +++GG + V H +SL+ +++IE+LR + + R + + Sbjct: 121 DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPLPM 180 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEII 185 T E KIDG + + Y G RGDG +GED++ +R I +IP L + +IPE + Sbjct: 181 TCEVKIDGLALNLIYRNGVLEQGLTRGDGLTGEDITLNVRTIGSIPANLGGPAADIPEFV 240 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF ALN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG+G Sbjct: 241 EIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 300 Query: 245 K---------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIR 292 S Q E G PV+ R+ +F I + YY E R Sbjct: 301 TLRWGSGRPVGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEH---R 357 Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG + Sbjct: 358 GDIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRV 417 Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412 TPVA L+PV + G+ ++ TLHN +K R G + +GD V+V++AG+VIP+ Sbjct: 418 TPVAVLKPVYVAGSTVSRTTLHNPFEVK---------RKG--VLIGDTVVVRKAGDVIPE 466 Query: 413 VVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 +V +V R D + F P CP C S++ K G RC +C AQ Sbjct: 467 LVGPVVERRKGREDDLREFVMPDRCPSCGSKLA---PAKEGD--KDIRCPNVESCPAQLT 521 Query: 470 ERLKHFVSRDAFNIEGLGKQ 489 ER+ + SR AF+IE LG Q Sbjct: 522 ERIINLASRKAFDIEHLGDQ 541 Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 19/222 (8%) Query: 506 IPADIFTLQRRQQTS---TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +PAD ++ ++T+ T + + G+ + ++D ++K R+ L R + +L IR + Sbjct: 685 VPADAVVVRVDRKTTRNGTVDVPVYVRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 743 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QNP 619 G AR +A + S + I D LS I +G IA+++V ++ + P Sbjct: 744 GPPTARLIASAFGSL--------DAIEQAGVDELSAIDG--IGPEIAESVVNWFAAAREP 793 Query: 620 RNICA--VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 R+ + A + + K +V TG+L+ R A+E + + G Sbjct: 794 RDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAIIERGGKA 853 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +S+KTD ++VG+N GSK KA++LG+ +++E QF LL+ Sbjct: 854 AGSVSKKTDWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 895 >gi|21225788|ref|NP_631567.1| DNA ligase [Streptomyces coelicolor A3(2)] gi|14495032|emb|CAC42149.1| putative DNA ligase [Streptomyces coelicolor A3(2)] Length = 723 Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 204/701 (29%), Positives = 338/701 (48%), Gaps = 74/701 (10%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D YD L R A PD P+ P K+ G + V H++P LSL+ +++ Sbjct: 65 DDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAG--GAAEGDVPHTVPMLSLDNVFSP 119 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164 E+ + + R + D F++ PK+DG + RY +G+ RGDG +GEDVS Sbjct: 120 EEFTVWTASLAR---RIDREVTRFSVGPKLDGLAVAARYREGRLTRLITRGDGTAGEDVS 176 Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224 I + +P L+ P +EVRGE+ ++ F N+ I G +P+ANPRNAA+G L Sbjct: 177 HAIGTVEGLPGTLAE--PVTVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRNAAAGTL 234 Query: 225 RRLNPTDITRYLNFFVHGL----GKTSEIFAKGQ----YEMLQKMRCLGFPVNNGVRQAN 276 R T + FF +GL G + + + + E+++ LG + G + Sbjct: 235 R-AKERAYTVPMTFFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSAGTAVPD 293 Query: 277 TFHG----IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 G +V+ E+ ++R+ LP+ IDG+V K D + ++ G +R+PRW I++K Sbjct: 294 VVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAIAYKLPA 353 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + TRLL+++ +GRTGI+ P LEPV I G+ IT ATLHN I Sbjct: 354 VEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADIT-----------R 402 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 R +R+GD V+V RAG+VIP++ + + R + QP FP CP C S D++ + Sbjct: 403 RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGS----DIDTSEERW 458 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 RC G C + L + RD +IEGLG ++ + A + AD+F Sbjct: 459 ----RCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVADLADLFL 508 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L+R Q + ++ G+ S NL ++ + + L R + +LG+R G ++R +A+ Sbjct: 509 LRREQLLALERM------GETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSMSRRIAR 562 Query: 573 YYLSYQNF-------AQEINNIIAHNNDDWLSLIR--VPLVGDIIAQAIVEFYQ------ 617 Y+ + + Q ++ I ++ I PL+ D +A A V + Sbjct: 563 YFATMDHIRAADAEAMQRVDGIGVEKAPSVVAEIAELAPLI-DRLAAAGVNMTEPGATPP 621 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 P + + E +P G + + TG L+++ R++ E + + G Sbjct: 622 RPADTDGADGATAE-APGDGGPLAGMKVVVTG---AMTGNLERLSRNEMNELIERAGGRS 677 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S+ +S+ T +++ G+ GSK KA+QLGV++ E+F L+ Sbjct: 678 SSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLV 718 >gi|224282769|ref|ZP_03646091.1| LigA [Bifidobacterium bifidum NCIMB 41171] gi|313139930|ref|ZP_07802123.1| LigA [Bifidobacterium bifidum NCIMB 41171] gi|313132440|gb|EFR50057.1| LigA [Bifidobacterium bifidum NCIMB 41171] Length = 900 Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 174/500 (34%), Positives = 262/500 (52%), Gaps = 41/500 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +LS E A + + + + YY P+ D+ YDA R + FP L Sbjct: 64 VSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL--- 120 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P P +++GG + V H +SL+ +++IE+LR + + R + + Sbjct: 121 DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPLPM 180 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEII 185 T E KIDG + + Y G RGDG +GED++ +R I +IP L + +IPE + Sbjct: 181 TCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPAADIPEFV 240 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF ALN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG+G Sbjct: 241 EIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 300 Query: 245 ---------KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIR 292 S Q E G PV+ R+ +F I + YY E R Sbjct: 301 TLRWGSGRPAGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEH---R 357 Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG + Sbjct: 358 GDIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRV 417 Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412 TPVA L+PV + G+ ++ TLHN +K R G + +GD V+V++AG+VIP+ Sbjct: 418 TPVAVLKPVYVAGSTVSRTTLHNPFEVK---------RKG--VLIGDTVVVRKAGDVIPE 466 Query: 413 VVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 +V +V R D + F P CP C S++ K G RC +C AQ Sbjct: 467 LVGPVVERRKGREDDLREFVMPDRCPSCGSKLA---PAKEGD--KDIRCPNVESCPAQLT 521 Query: 470 ERLKHFVSRDAFNIEGLGKQ 489 ER+ + SR AF+IE LG Q Sbjct: 522 ERIINLASRKAFDIEHLGDQ 541 Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 111/223 (49%), Gaps = 21/223 (9%) Query: 506 IPADIFTLQRRQQTS---TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +PAD ++ ++T+ T + + G+ + ++D ++K R+ L R + +L IR + Sbjct: 685 VPADAVVVRVDRKTTRNGTVDVPVYVRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 743 Query: 563 GAEIARSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QN 618 G AR +A + S + Q ++ + A + +G IA+++V ++ + Sbjct: 744 GPPTARLIASAFGSLEAIEQAGVDELSAIDG-----------IGPEIAESVVNWFAAARE 792 Query: 619 PRNICA--VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 PR+ + A + + K +V TG+L+ R A+E + + G Sbjct: 793 PRDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAIIERGGK 852 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +S+KTD ++VG+N GSK KA++LG+ +++E QF LL+ Sbjct: 853 AAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 895 >gi|166215594|sp|Q93IZ8|DNLJ2_STRCO RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 Length = 700 Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 204/701 (29%), Positives = 338/701 (48%), Gaps = 74/701 (10%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D YD L R A PD P+ P K+ G + V H++P LSL+ +++ Sbjct: 42 DDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAG--GAAEGDVPHTVPMLSLDNVFSP 96 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164 E+ + + R + D F++ PK+DG + RY +G+ RGDG +GEDVS Sbjct: 97 EEFTVWTASLAR---RIDREVTRFSVGPKLDGLAVAARYREGRLTRLITRGDGTAGEDVS 153 Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224 I + +P L+ P +EVRGE+ ++ F N+ I G +P+ANPRNAA+G L Sbjct: 154 HAIGTVEGLPGTLAE--PVTVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRNAAAGTL 211 Query: 225 RRLNPTDITRYLNFFVHGL----GKTSEIFAKGQ----YEMLQKMRCLGFPVNNGVRQAN 276 R T + FF +GL G + + + + E+++ LG + G + Sbjct: 212 R-AKERAYTVPMTFFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSAGTAVPD 270 Query: 277 TFHG----IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 G +V+ E+ ++R+ LP+ IDG+V K D + ++ G +R+PRW I++K Sbjct: 271 VVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAIAYKLPA 330 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + TRLL+++ +GRTGI+ P LEPV I G+ IT ATLHN I Sbjct: 331 VEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADIT-----------R 379 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 R +R+GD V+V RAG+VIP++ + + R + QP FP CP C S D++ + Sbjct: 380 RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGS----DIDTSEERW 435 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 RC G C + L + RD +IEGLG ++ + A + AD+F Sbjct: 436 ----RCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVADLADLFL 485 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L+R Q + ++ G+ S NL ++ + + L R + +LG+R G ++R +A+ Sbjct: 486 LRREQLLALERM------GETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSMSRRIAR 539 Query: 573 YYLSYQNF-------AQEINNIIAHNNDDWLSLIR--VPLVGDIIAQAIVEFYQ------ 617 Y+ + + Q ++ I ++ I PL+ D +A A V + Sbjct: 540 YFATMDHIRAADAEAMQRVDGIGVEKAPSVVAEIAELAPLI-DRLAAAGVNMTEPGATPP 598 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 P + + E +P G + + TG L+++ R++ E + + G Sbjct: 599 RPADTDGADGATAE-APGDGGPLAGMKVVVTG---AMTGNLERLSRNEMNELIERAGGRS 654 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S+ +S+ T +++ G+ GSK KA+QLGV++ E+F L+ Sbjct: 655 SSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLV 695 >gi|256783179|ref|ZP_05521610.1| DNA ligase [Streptomyces lividans TK24] Length = 690 Score = 279 bits (714), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 204/701 (29%), Positives = 338/701 (48%), Gaps = 74/701 (10%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D YD L R A PD P+ P K+ G + V H++P LSL+ +++ Sbjct: 32 DDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAG--GAAEGDVPHTVPMLSLDNVFSP 86 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164 E+ + + R + D F++ PK+DG + RY +G+ RGDG +GEDVS Sbjct: 87 EEFTVWTASLAR---RIDREVTRFSVGPKLDGLAVAARYREGRLTRLITRGDGTAGEDVS 143 Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224 I + +P L+ P +EVRGE+ ++ F N+ I G +P+ANPRNAA+G L Sbjct: 144 HAIGTVEGLPGTLAE--PVTVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRNAAAGTL 201 Query: 225 RRLNPTDITRYLNFFVHGL----GKTSEIFAKGQ----YEMLQKMRCLGFPVNNGVRQAN 276 R T + FF +GL G + + + + E+++ LG + G + Sbjct: 202 R-AKERAYTVPMTFFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSAGTAVPD 260 Query: 277 TFHG----IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 G +V+ E+ ++R+ LP+ IDG+V K D + ++ G +R+PRW I++K Sbjct: 261 VVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAIAYKLPA 320 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + TRLL+++ +GRTGI+ P LEPV I G+ IT ATLHN I Sbjct: 321 VEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADIT-----------R 369 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 R +R+GD V+V RAG+VIP++ + + R + QP FP CP C S D++ + Sbjct: 370 RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGS----DIDTSEERW 425 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 RC G C + L + RD +IEGLG ++ + A + AD+F Sbjct: 426 ----RCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVADLADLFL 475 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L+R Q + ++ G+ S NL ++ + + L R + +LG+R G ++R +A+ Sbjct: 476 LRREQLLALERM------GETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSMSRRIAR 529 Query: 573 YYLSYQNF-------AQEINNIIAHNNDDWLSLIR--VPLVGDIIAQAIVEFYQ------ 617 Y+ + + Q ++ I ++ I PL+ D +A A V + Sbjct: 530 YFATMDHIRAADAEAMQRVDGIGVEKAPSVVAEIAELAPLI-DRLAAAGVNMTEPGATPP 588 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 P + + E +P G + + TG L+++ R++ E + + G Sbjct: 589 RPADTDGADGATAE-APGDGGPLAGMKVVVTG---AMTGNLERLSRNEMNELIERAGGRS 644 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S+ +S+ T +++ G+ GSK KA+QLGV++ E+F L+ Sbjct: 645 SSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLV 685 >gi|283783245|ref|YP_003373999.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05] gi|283441754|gb|ADB14220.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05] Length = 962 Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 176/511 (34%), Positives = 263/511 (51%), Gaps = 48/511 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+IEQA K + L YY P D+ YDA R A+ AFP L + P Sbjct: 97 LTIEQAAKLWAKLAAWAQSDQIAYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTP 153 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +++GG + V H +SL+ +++IE+L + + R Q + + T E Sbjct: 154 QSPTHRVGGTFSNDFTSVKHPSRMMSLDDVFSIEELHDWYNSVIRDLQWDESQPLPMTCE 213 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEV 187 KIDG + + Y G RGDG +GED++ +R I IP L + IPE +E+ Sbjct: 214 VKIDGLALNLIYRNGTLEQGLTRGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEI 273 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK- 245 RGEV++ DF LNDE GR +ANPRNAA+G LR+ +P TR L+FF HGLG+ Sbjct: 274 RGEVFMKWEDFRKLNDEQENAGRVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGEL 333 Query: 246 -----------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSI 291 ++ Y++ Q+ G PV+ R+ F I + YY + Sbjct: 334 RWKENTSHNNSETKFNQSDAYKLYQQW---GIPVSPYTRKVTNFSEIEEMIDYYGKH--- 387 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R+ + + +DG+V KVD+ +LQ QLG +R+PRW I++K+ ++ +T L DI +Q+GRTG Sbjct: 388 RANILHALDGIVVKVDDRALQHQLGATSRAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGR 447 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVA LEPV + G+ I+ TLHN ++ + + +GD V+V++AG+VIP Sbjct: 448 VTPVAVLEPVTVAGSTISRTTLHNAYEVE-----------HKGVLIGDTVVVRKAGDVIP 496 Query: 412 KVVDIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 ++V ++ R + + F P +CP C +++ K G RC C AQ Sbjct: 497 ELVGPVLKAREGRENELRKFVMPEYCPSCGTKLAP---AKEGD--KDIRCPNVENCPAQL 551 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 ER+ H SR AF+IE LG ED Sbjct: 552 TERIIHLASRQAFDIENLGDNAALALTNPED 582 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 26/258 (10%) Query: 481 FNIEGLGKQ--QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIE-------NILGFG 531 + EG ++ L+ + + P F + I A + + ++ T K N+ + Sbjct: 695 YEAEGTSEKTTSLNEQWDPQYPKFQVPIDAKVVLWKNKRITRNAKTSDNAKETINVPWYT 754 Query: 532 DVSVTN---LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 S T L + K +N +L R + +L IR +G AR +A + S N ++ Sbjct: 755 RPSETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKASIE-- 812 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE-ALLKEVSPS--IGRHE-KNVS 644 L ++ VG IAQA+ ++Q ++ + +LK + +G+ E + + Sbjct: 813 --------ELTQIDGVGPEIAQAVYNWFQQAKDPANWQFEVLKSWQEAGVVGKVEASSFA 864 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + K +V TG+LQ R A+E + G S +S+ T +I+G+N GSK KAQ+L Sbjct: 865 QTLVGKTIVVTGSLQGFTRDSAKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQEL 924 Query: 705 GVKIMNEEQFLFLLQQYN 722 G+ ++NE+QF LL+ N Sbjct: 925 GIPMLNEQQFNTLLKTGN 942 >gi|289767058|ref|ZP_06526436.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24] gi|289697257|gb|EFD64686.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24] Length = 703 Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 204/701 (29%), Positives = 338/701 (48%), Gaps = 74/701 (10%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D YD L R A PD P+ P K+ G + V H++P LSL+ +++ Sbjct: 45 DDAYDRLARGIAAWEAEHPDEVL---PDSPTGKVAG--GAAEGDVPHTVPMLSLDNVFSP 99 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164 E+ + + R + D F++ PK+DG + RY +G+ RGDG +GEDVS Sbjct: 100 EEFTVWTASLAR---RIDREVTRFSVGPKLDGLAVAARYREGRLTRLITRGDGTAGEDVS 156 Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224 I + +P L+ P +EVRGE+ ++ F N+ I G +P+ANPRNAA+G L Sbjct: 157 HAIGTVEGLPGTLAE--PVTVEVRGEILMTTAQFEHANEVRIRHGGQPFANPRNAAAGTL 214 Query: 225 RRLNPTDITRYLNFFVHGL----GKTSEIFAKGQ----YEMLQKMRCLGFPVNNGVRQAN 276 R T + FF +GL G + + + + E+++ LG + G + Sbjct: 215 R-AKERAYTVPMTFFGYGLLALPGTDAALAGRLEELPYSELMETAAGLGVHTSAGTAVPD 273 Query: 277 TFHG----IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 G +V+ E+ ++R+ LP+ IDG+V K D + ++ G +R+PRW I++K Sbjct: 274 VVVGTPEQVVARVQEIAALRAELPFGIDGIVVKADLAADRRAAGSGSRAPRWAIAYKLPA 333 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + TRLL+++ +GRTGI+ P LEPV I G+ IT ATLHN I Sbjct: 334 VEKITRLLEVEWNVGRTGIIAPRGVLEPVVIEGSTITYATLHNPADIT-----------R 382 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 R +R+GD V+V RAG+VIP++ + + R + QP FP CP C S D++ + Sbjct: 383 RGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPEACPRCGS----DIDTSEERW 438 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFT 512 RC G C + L + RD +IEGLG ++ + A + AD+F Sbjct: 439 ----RCAQGRNC--HLVASLAYAAGRDQLDIEGLGTTRVVQLVE----AGLVADLADLFL 488 Query: 513 LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 L+R Q + ++ G+ S NL ++ + + L R + +LG+R G ++R +A+ Sbjct: 489 LRREQLLALERM------GETSTDNLLAALARAKEQPLSRVLCALGVRGTGRSMSRRIAR 542 Query: 573 YYLSYQNF-------AQEINNIIAHNNDDWLSLIR--VPLVGDIIAQAIVEFYQ------ 617 Y+ + + Q ++ I ++ I PL+ D +A A V + Sbjct: 543 YFATMDHIRAADAEAMQRVDGIGVEKAPSVVAEIAELAPLI-DRLAAAGVNMTEPGATPP 601 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 P + + E +P G + + TG L+++ R++ E + + G Sbjct: 602 RPADTDGADGATAE-APGDGGPLAGMKVVVTG---AMTGNLERLSRNEMNELIERAGGRS 657 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S+ +S+ T +++ G+ GSK KA+QLGV++ E+F L+ Sbjct: 658 SSSVSKNTSLVVAGEGAGSKRAKAEQLGVRLATPEEFAVLV 698 >gi|311064086|ref|YP_003970811.1| NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010] gi|310866405|gb|ADP35774.1| LigA NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010] Length = 896 Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 173/500 (34%), Positives = 262/500 (52%), Gaps = 41/500 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +LS E A + + + + YY P+ D+ YDA R + FP L Sbjct: 64 VSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL--- 120 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P P +++GG + V H +SL+ +++IE+LR + + R + + Sbjct: 121 DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPLPM 180 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEII 185 T E KIDG + + Y G RGDG +GED++ +R I +IP L + +IPE + Sbjct: 181 TCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPAADIPEFV 240 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF ALN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG+G Sbjct: 241 EIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 300 Query: 245 ---------KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIR 292 S Q E G PV+ R+ +F I + YY E R Sbjct: 301 TLRWGSGRPAGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEH---R 357 Query: 293 STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLD+ +Q+GRTG + Sbjct: 358 GDIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDVTVQVGRTGRV 417 Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412 TPVA L+PV + G+ ++ TLHN +K R G + +GD V+V++AG+VIP+ Sbjct: 418 TPVAVLKPVYVAGSTVSRTTLHNPFEVK---------RKG--VLIGDTVVVRKAGDVIPE 466 Query: 413 VVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 +V +V R D + F P CP C S++ K G RC +C AQ Sbjct: 467 LVGPVVERRKGREDDLREFVMPDRCPSCGSKLA---PAKEGD--KDIRCPNVESCPAQLT 521 Query: 470 ERLKHFVSRDAFNIEGLGKQ 489 ER+ + SR AF+IE LG Q Sbjct: 522 ERIINLASRKAFDIEHLGDQ 541 Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 111/223 (49%), Gaps = 21/223 (9%) Query: 506 IPADIFTLQRRQQTS---TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +PAD ++ ++T+ T + + G+ + ++D ++K R+ L R + +L IR + Sbjct: 681 VPADAVVVRVDRKTTRNGTVDVPVYVRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 739 Query: 563 GAEIARSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY---QN 618 G AR +A + S + Q ++ + A + +G IA+++V ++ + Sbjct: 740 GPPTARLIASAFGSLEAIEQAGVDELSAIDG-----------IGPEIAESVVNWFAAARE 788 Query: 619 PRNICA--VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 PR+ + A + + K +V TG+L+ R A+E + + G Sbjct: 789 PRDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKEAIIERGGK 848 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +S+KTD ++VG+N GSK KA++LG+ +++E QF LL+ Sbjct: 849 AAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLE 891 >gi|254430924|ref|ZP_05044627.1| DNA ligase, NAD-dependent [Cyanobium sp. PCC 7001] gi|197625377|gb|EDY37936.1| DNA ligase, NAD-dependent [Cyanobium sp. PCC 7001] Length = 667 Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 164/497 (32%), Positives = 253/497 (50%), Gaps = 36/497 (7%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A + E R ++ L++ ++ YY P++ D YD L R + A P+L R Sbjct: 2 AGAPEPLRDRIAELQRLLTQAAHAYYVLDAPVMEDPVYDRLYRELLELEQAHPELIR--- 58 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS----- 125 P+ P ++GG V H I LSL+ ++ E+L + R+ + + Sbjct: 59 PDSPTQRVGGSPAEGFRSVEHRIALLSLDNAFSTEELEAWYARLLKVLDRTPAAGEPLPD 118 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI- 184 + E KIDG + + Y +G AA RGDG GE+++A +R I ++P L L P Sbjct: 119 LAMVGELKIDGNALALSYREGLLERAATRGDGERGEEITANVRTIQSVPLRLRLQAPPAW 178 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243 +EVRGE I F A+N E +A G +ANPRNA +G LR+L+P + R L+FF + L Sbjct: 179 VEVRGEALIPDGTFAAINAERLARGEPAFANPRNACAGTLRQLDPQVVADRRLDFFAYTL 238 Query: 244 --------GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 G Q+E L +R GF VN + +++ + R L Sbjct: 239 HLPDDWQPGPGDPPRPSSQWESLAWLRAAGFKVNPNAELLADLAAVEAFFTRWEPERRQL 298 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 PY DG+V K+D+ LQ G ++PRW I+ K+A ++A +RLL + Q+GRTG++TPV Sbjct: 299 PYATDGVVVKLDDLRLQADAGFTQKAPRWAIALKYAAEEAPSRLLRLSCQVGRTGVVTPV 358 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A EPV + G ++ ATLHN D + L D+ GD ++V++AGE+IP+VV Sbjct: 359 AEFEPVALAGTSVSRATLHNADRLAEL-----------DLHAGDTIVVRKAGEIIPEVVR 407 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 ++ R A+ P CP C S +VR+ AA RC +C A L+H+ Sbjct: 408 VLPELRPAAARRLELPRHCPECGSELVREAG------EAATRCVNS-SCPAILRGALRHW 460 Query: 476 VSRDAFNIEGLGKQQLD 492 VS+ A +++GLG + ++ Sbjct: 461 VSKAALDVDGLGSKLIE 477 >gi|182434930|ref|YP_001822649.1| putative NAD-dependent DNA ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|254778149|sp|B1VUC2|DNLJ1_STRGG RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|178463446|dbj|BAG17966.1| putative NAD-dependent DNA ligase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 719 Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 205/712 (28%), Positives = 340/712 (47%), Gaps = 78/712 (10%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D YD L R A P+ ++ P G K+ G ++ V H++P LSL+ +++ Sbjct: 48 DDAYDRLARGIAAYEADHPEEVLADSPTG---KVAG--GAAVGDVPHTVPMLSLDNVFSA 102 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164 E +F+T ++ +++EPK+DG + RY G+F RGDG +GEDVS Sbjct: 103 E---QFVTWTASLERRIGRPVTAWSVEPKLDGLAVAARYRDGRFERLITRGDGTAGEDVS 159 Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224 A+ +P L+ P IEVRGE+ ++ F N G P+ANPRN A+G L Sbjct: 160 HAAGAVVGLPERLAE--PVTIEVRGEILMTNEQFAQGNAIRTEHGGAPFANPRNGAAGTL 217 Query: 225 R---RLNPTDITRYLNFFVHGL------GKTSEIFAKGQY-EMLQKMRCLGFPVNNGVR- 273 R R + T FF +G G+ E A+ + E+L + LG G Sbjct: 218 RAKDRAYRVETT----FFAYGALPLPDSGELGEALAELPHSEVLAYVAGLGVHTAAGTAV 273 Query: 274 ---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 +A T + + + + ++R+ LP+ IDG+V K D + Q++ G R+PRW +++K Sbjct: 274 APLRATTVEEVQARVDGIGALRAALPFGIDGIVIKADLAADQQEAGSGTRAPRWAVAYKL 333 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 + TRLL ++ +GRTGI+ P A LEPV I G+ + ATLHN I Sbjct: 334 PAVEKITRLLAVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADIT---------- 383 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 RD+R+GD+V+V +AG++IP++ +V+ R D P +FP CP C S + D + + Sbjct: 384 -RRDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIAFPESCPQCGSEI--DASEQR- 439 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 RCT G C + + + + RD +IEGLG ++ A + AD+ Sbjct: 440 -----WRCTRGRDC--RLVASVSYAAGRDQLDIEGLGSTRVVQLVD----AGLVADFADL 488 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 FTL+R Q + ++ G+ S NL +I R L R +LG+R G ++R + Sbjct: 489 FTLRREQLLALDRM------GETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSRRI 542 Query: 571 AKYYLSYQNF----AQEINNIIAHNNDDWLSLIR-----VPLVGDIIAQAI------VEF 615 A+++ + A+ + + + +++ PL+G ++A + Sbjct: 543 ARHFATMDRIVAADAESLQRVDGIGKEKAAAVVAELVELAPLIGKLVAAGVSMTEPGATP 602 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT----GTLQKIQRHKAQEYVT 671 +P A + G + + +V T G L+K+ R++ E + Sbjct: 603 PPDPGTEEAAAPATADAGAPGGDAATGSALPLAGMTVVVTGAMSGALEKLSRNQMNELIE 662 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + G S+ +SR+T +++ G+ GSK KA+ LGV+I E+F L+ + T Sbjct: 663 RAGGKSSSSVSRRTTLLVAGEKAGSKRAKAEDLGVRIAVPEEFAELVGAFLT 714 >gi|298252820|ref|ZP_06976614.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1] gi|297533184|gb|EFH72068.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1] Length = 962 Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 176/511 (34%), Positives = 263/511 (51%), Gaps = 48/511 (9%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+IEQA K + L YY P D+ YDA R A+ AFP L + P Sbjct: 97 LTIEQAAKLWAKLAAWAQSDQIAYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTP 153 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +++GG + V H +SL+ +++IE+L + + R Q + + T E Sbjct: 154 QSPTHRVGGTFSNDFTSVKHPSRMMSLDDVFSIEELHDWYNSVIRDLQWDESKPLPMTCE 213 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEV 187 KIDG + + Y G RGDG +GED++ +R I IP L + IPE +E+ Sbjct: 214 VKIDGLALNLIYRNGTLEQGLTRGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEI 273 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK- 245 RGEV++ DF LNDE GR +ANPRNAA+G LR+ +P TR L+FF HGLG+ Sbjct: 274 RGEVFMKWEDFRKLNDEQENAGRVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGEL 333 Query: 246 -----------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSI 291 ++ Y++ Q+ G PV+ R+ F I + YY + Sbjct: 334 RWKENTSHNNSETKFNQSDAYKLYQQW---GIPVSPYTRKVTNFSEIEEMIDYYGKH--- 387 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R+ + + +DG+V KVD+ +LQ QLG +R+PRW I++K+ ++ +T L DI +Q+GRTG Sbjct: 388 RANILHALDGIVVKVDDRALQHQLGATSRAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGR 447 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVA LEPV + G+ I+ TLHN ++ + + +GD V+V++AG+VIP Sbjct: 448 VTPVAVLEPVTVAGSTISRTTLHNAYEVE-----------HKGVLIGDTVVVRKAGDVIP 496 Query: 412 KVVDIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 ++V ++ R + + F P +CP C +++ K G RC C AQ Sbjct: 497 ELVGPVLKAREGRENELRKFVMPEYCPSCGTKLAP---AKEGD--KDIRCPNVENCPAQL 551 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 ER+ H SR AF+IE LG ED Sbjct: 552 TERIIHLASRQAFDIENLGDNAALALTNPED 582 Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 24/237 (10%) Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIE-------NILGFGDVSVTN---LYDSINKRRNIS 549 P F + I A + + ++ T K N+ + S T L + K +N + Sbjct: 716 PKFQVPIDAKVVLWKNKRITRNAKTSDNAKETINVPWYTRPSETTRSMLEEIAQKGKNAA 775 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IR +G AR +A + S N ++ L ++ VG IA Sbjct: 776 LWRVLVALSIRRLGPPTARLIAANFGSLDNISKASIE----------ELTQIDGVGPEIA 825 Query: 610 QAIVEFYQNPRNICAVE-ALLKEVSPS--IGRHE-KNVSSEIENKKLVFTGTLQKIQRHK 665 QA+ ++Q ++ + +LK + +G+ E + + + K +V TG+LQ R Sbjct: 826 QAVYNWFQQAKDPANWQFEVLKSWQEAGVVGKVETSSFAQTLVGKTIVVTGSLQGFTRDS 885 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+E + G S +S+ T +I+G+N GSK KAQ+LG+ ++NE+QF LL+ N Sbjct: 886 AKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQELGIPMLNEQQFNALLKTGN 942 >gi|297243530|ref|ZP_06927462.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD] gi|296888575|gb|EFH27315.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD] Length = 922 Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 174/508 (34%), Positives = 260/508 (51%), Gaps = 42/508 (8%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+IEQA K + L YY P D+ YDA R A+ AFP L + P Sbjct: 57 LTIEQAAKLWAKLAAWAQSDQIAYYVEDSPTSSDAAYDARMRALSALEAAFPTL---DTP 113 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +++GG + V H +SL+ +++IE+L + + R Q + + T E Sbjct: 114 QSPTHRVGGTFSNDFTSVKHPSRMMSLDDVFSIEELHDWYNSVIRDLQWDESQPLPMTCE 173 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEV 187 KIDG + + Y G RGDG +GED++ +R I IP L + IPE +E+ Sbjct: 174 VKIDGLALNLIYRNGTLEQGLTRGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEI 233 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK- 245 RGEV++ DF LNDE GR +ANPRNAA+G LR+ +P TR L+FF HGLG+ Sbjct: 234 RGEVFMKWEDFRKLNDEQENAGRVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGEL 293 Query: 246 -----------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 ++ Y++ Q+ G PV+ R+ F I + R+ Sbjct: 294 RWKENTSHNNSETKFNQSDAYKLYQQW---GIPVSPYTRKVTNFSEIEEMIDYYGKHRAN 350 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 + + +DG+V KVD+ +LQ QLG +R+PRW I++K+ ++ +T L DI +Q+GRTG +TP Sbjct: 351 ILHALDGIVVKVDDRALQHQLGATSRAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGRVTP 410 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA LEPV + G+ I+ TLHN ++ + + +GD V+V++AG+VIP++V Sbjct: 411 VAVLEPVTVAGSTISRTTLHNAYEVE-----------HKGVLIGDTVVVRKAGDVIPELV 459 Query: 415 DIIVNERHP---DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 ++ R + + F P +CP C +++ K G RC C AQ ER Sbjct: 460 GPVLKAREGRENELRKFVMPEYCPSCGTKLAP---AKEGD--KDIRCPNVENCPAQLTER 514 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + H SR AF+IE LG ED Sbjct: 515 IIHLASRQAFDIENLGDNAALALTNPED 542 Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 24/237 (10%) Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIE-------NILGFGDVSVTN---LYDSINKRRNIS 549 P F + I A + + ++ T K N+ + S T L + K +N + Sbjct: 676 PKFQVPIDAKVVLWKNKRITRNAKTSDNAKETINVPWYTRPSETTRSMLEEIAQKGKNAA 735 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R + +L IR +G AR +A + S N ++ L ++ VG IA Sbjct: 736 LWRVLVALSIRRLGPPTARLIAANFGSLDNISKASIE----------ELTQIDGVGPEIA 785 Query: 610 QAIVEFYQNPRNICAVE-ALLKEVSPS--IGRHE-KNVSSEIENKKLVFTGTLQKIQRHK 665 QA+ ++Q ++ + +LK + +G+ E + + + K +V TG+LQ R Sbjct: 786 QAVYNWFQQAKDPANWQFEVLKSWQEAGVVGKVEASSFAQTLVGKTIVVTGSLQGFTRDS 845 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+E + G S +S+ T +I+G+N GSK KAQ+LG+ ++NE+QF LL+ N Sbjct: 846 AKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQELGIPMLNEQQFNTLLKTGN 902 >gi|310830411|ref|YP_003965512.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2] gi|309249878|gb|ADO59444.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2] Length = 662 Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 221/725 (30%), Positives = 363/725 (50%), Gaps = 91/725 (12%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +I A++ + L EI HD+ Y Q+ KP+I D EY+ L + +P+ P+ Sbjct: 3 TIFNAQQRIKQLTSEIRKHDELYDQF-KPVISDQEYNNLYYELLDLEKQYPEFVI---PD 58 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +KI + L KV HS S EK+ +++ F+ R ++ K ++ Sbjct: 59 SPTHKIYTVLVDGLEKVRHSSFMGSQEKMKTWDEVVSFMNR----YEGK------VLVQH 108 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGE 190 K+DG I + Y G A RG+G G+++ +R I +P NIP +E+R E Sbjct: 109 KLDGLTIVLTYMDGLLQKAVTRGNGEIGQNIIHTVRTIKNVPA----NIPFKGRLEIRME 164 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-----DITRYLNFFVHGLGK 245 I +F +N + ++NPRN SG L +LN + ++ + VH G Sbjct: 165 GIIPYAEFERINVD------GAFSNPRNLVSGTLNQLNASIASERNVQGIVFDIVHIEGM 218 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV---SYYNEMK-SIRSTLPYDIDG 301 T + E L+ ++ GF V T G+ +Y EM+ + R TLP+ IDG Sbjct: 219 TFNKIS----EQLRFLKEQGFTTVESVAFEQTVEGLSQMNAYLQEMEENTRKTLPFMIDG 274 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 LV K DE S +++LG ++ PRW ++KFA +A+T +L ++ + RTG +TPVA L V Sbjct: 275 LVIKFDELSAKEKLGNTSKHPRWSAAYKFASLEATTTILGVEHSVARTGQITPVALLNTV 334 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +I ++ A+L N I+ +DIR+GDRV V RA +VIP+V I R Sbjct: 335 DIDSVDVSRASLANYGMIE-----------KKDIRIGDRVFVIRANDVIPQVTASIKEMR 383 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + Q P+ CP C S + V A+ G CS Q +++HF SR A Sbjct: 384 TGNEQLIQTPTCCPKCGSPT---------EFVGAYLYCRGEQCSPQLQGKIEHFASRKAL 434 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI LG ++ FFK+ IR D++ LQ +++ +I ++ GFG S T L Sbjct: 435 NINSLGTSTVELFFKNG----IIRHFLDLYNLQEKEE----QICSLEGFGKKSFTKLQKE 486 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND--DW-LSL 598 + + + L + + +L ++H+G ++ L+K Y ++I+ I+ + D D+ +L Sbjct: 487 LERVKKEPLHKVLIALSVKHLGETKSKELSKVY-------KDIDAIMNASEDAEDFRAAL 539 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-----RHEKNVSSE---IENK 650 + +P G I +IV F+ + +L++++ SIG + N+S E + + Sbjct: 540 LALPDFGSAITDSIVAFFTSEEG----RSLIRKMQ-SIGFTMKSEFDTNISQENLPLSGQ 594 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TGTL + R +A+E + LGA VS +S+KT ++VG SK +KA +LGV+++ Sbjct: 595 TVVVTGTLGAMGRDEAKEKLEALGAKVSGSISKKTSFVVVGTGK-SKHDKAIELGVRVVY 653 Query: 711 EEQFL 715 E++FL Sbjct: 654 EDEFL 658 >gi|251799680|ref|YP_003014411.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. JDR-2] gi|247547306|gb|ACT04325.1| DNA ligase, NAD-dependent [Paenibacillus sp. JDR-2] Length = 677 Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 210/717 (29%), Positives = 340/717 (47%), Gaps = 76/717 (10%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L EIS H+ YY +P I D++YD L A+ + P+ P ++GG Sbjct: 14 MQELAAEISAHNYSYYTLDQPTINDADYDKLYDELVALEADTGVVL----PDSPTQRVGG 69 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR----FWQKKDDNSIF----FTLEP 132 E+ H SL+K + EDL + R+ + + K + + +E Sbjct: 70 ELLKGFEPHRHRARLWSLDKAQDTEDLLAWNQRVLKAINDYNAKHPEEEPLPQPNYVIEL 129 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRG 189 K DG + + YE G+ + A+ RG+G GE + A ++ I ++P L IP IIEV+G Sbjct: 130 KFDGLTLNLTYENGQLIQASTRGNGTVGEGILAQVKTIRSVP----LTIPFGDGIIEVQG 185 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248 E ++ L++ + +P N RNAA+G LR LNP T R LN F + +G Sbjct: 186 EGIMN----LSVLERYNQTAAEPLKNARNAAAGALRNLNPKTTAERKLNAFFYNVGFAEG 241 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + EM Q ++ F VN N+ + + R L + IDG V K+ + Sbjct: 242 VSFSNHREMQQFLKDNLFKVNPYALYLNSIEEVQEELLRIAEKRLELDFLIDGAVVKLTD 301 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++ LG + PRW ++ KF ++A+T L + ++GRTG +TPVAR+E V + G + Sbjct: 302 MRTREALGYTDKFPRWAVAFKFEAEEAATVLESVSWEVGRTGKITPVARVEAVELAGVTV 361 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 N TL+N G + R +G V ++R+ +VIP+++ + E Q Sbjct: 362 QNCTLNN---------IGDIERKNLKHALGTLVSIRRSNDVIPEILGKVDEE---PGQEI 409 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP C + +L + L C L C Q + R+ HF SRDA +IE Sbjct: 410 VFPAVCPACGT----ELEQRGAHLF----CNNKLGCRPQIIGRITHFSSRDAMDIEAFSV 461 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + D + PAD++ L + FGD L D+I K ++ Sbjct: 462 MTAEQLYADCD----VHDPADLYALGYDDLIKLDR------FGDKKARKLLDAIEKSKDR 511 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L F+F+LGI + G + LA +Y S ++ +++ ++ L+ + VG I+ Sbjct: 512 DLAAFLFALGIPNTGKATTKMLADHYGS-------LDGVMSATAEE---LVGLQDVGAIV 561 Query: 609 AQAIVEFYQNPRNICAVEALLKE-------VSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 A +IV ++ +P I A A ++E P + R + S K +V TGTL K+ Sbjct: 562 ADSIVNYFADPI-IAASIARMREHGVKAEAEQPVVVRQDSIFSG----KTVVLTGTLSKM 616 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A + + GA VS +S+KTD +I G++ GSKL KA+ LG+ ++ +E L L Sbjct: 617 SRDEAAKKLEAFGAKVSGSVSKKTDFVIAGESAGSKLTKARDLGITVIEDEDELLRL 673 >gi|167465474|ref|ZP_02330563.1| DNA ligase, NAD-dependent [Paenibacillus larvae subsp. larvae BRL-230010] Length = 579 Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 186/601 (30%), Positives = 302/601 (50%), Gaps = 57/601 (9%) Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EI 184 F +E K DG I + Y++G V A+ RG+G GE + A ++ I ++P L IP + Sbjct: 24 FAVELKFDGLTINLTYDQGNLVQASTRGNGVVGEGILAQVKTIKSVP----LEIPYKEGL 79 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 IEV+GE + L++ D+ +P N RNAA+G LR LNP R L F + + Sbjct: 80 IEVQGEGMM----LLSVLDQYNQTAAEPLKNARNAAAGALRNLNPKVTAERRLTAFFYNV 135 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G + EM+ ++ F VN V+ NT + +++ R + IDG V Sbjct: 136 GFSDRKQFMNHQEMIAFLKENHFKVNPYVKYFNTIDEVFEEMKKLEQERHDFDFLIDGAV 195 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KV + ++ LG + PRW I++KF ++ +T L + ++GRTG +TPVA++EPV + Sbjct: 196 IKVTDIRTREVLGYTEKFPRWAIAYKFEAEEVTTVLEGVSWEVGRTGKITPVAKVEPVEL 255 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + N TL+N G + R +G V ++R+ +VIP+++ + E Sbjct: 256 AGVTVQNCTLNN---------IGDIERKNLKHALGSLVYIRRSNDVIPEILGKVTEE--I 304 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D + +P CP C + +L + L C L C Q + R+ HF SRDA +I Sbjct: 305 DGEEIKYPEHCPACGT----ELEQRGAHLF----CPNRLGCKPQLIGRITHFASRDAMDI 356 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 E + ++ D +R PAD++ L + I + FG+ NL D+I Sbjct: 357 ETFSVMTAEQLYQQLD----VRDPADLYDL------TYDDIIQLPRFGEKKANNLLDAIE 406 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + L F+F+LGI + G + LA+++ S + LI +P Sbjct: 407 KSKERDLSSFLFALGIPNTGKTTTKVLAEHFRSLDKVMDAVVE----------ELIALPD 456 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTL 658 VG I+A +I F+++P I ++ + K ++ G+ E + K +V TGTL Sbjct: 457 VGGIVADSIYTFFRDPIMIESIRRMKKAGVQAQMEAEEGKAEIDPGHPFYGKTIVLTGTL 516 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFL 717 + R +A + + LGA V+ +S+KTDI+I G+N GSKL KA+QLG++++ NE++ L L Sbjct: 517 SSMSRDEAAKKLESLGAKVTGSVSKKTDIVIAGENAGSKLAKAEQLGIRVIDNEDELLHL 576 Query: 718 L 718 L Sbjct: 577 L 577 >gi|119025970|ref|YP_909815.1| LigA [Bifidobacterium adolescentis ATCC 15703] gi|166215398|sp|A1A200|DNLJ_BIFAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118765554|dbj|BAF39733.1| LigA [Bifidobacterium adolescentis ATCC 15703] Length = 892 Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 171/503 (33%), Positives = 268/503 (53%), Gaps = 43/503 (8%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + ++S E A + + + + YY P+ D+ YDA R ++ FP L Sbjct: 61 VDVASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSL- 119 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P P +++GG + V H +SL+ +++IE+LR++ + R + + Sbjct: 120 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPL 177 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPE 183 T E KIDG + + Y G RGDG +GED++ +R I TIP+ L+ +IPE Sbjct: 178 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPE 237 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242 +E+RGEV++ +DF LN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG Sbjct: 238 FVEIRGEVFMRWDDFNKLNAENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 297 Query: 243 LGK---------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKS 290 +G Q E + + G PV+ R+ +F I + YY E Sbjct: 298 IGSLRWGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEH-- 355 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG Sbjct: 356 -RGDIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTG 414 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVA L+PV + G+ ++ TLHN +V R G + +GD V+V++AG+VI Sbjct: 415 RVTPVAVLKPVYVAGSTVSRTTLHN---------PFEVERKG--VLIGDTVVVRKAGDVI 463 Query: 411 PKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSA 466 P++V ++ R + + F P+ CP C + +L P K G RC +C A Sbjct: 464 PELVGPVLERRKGREGELRRFVMPTRCPSCGA----ELAPAKEGD--KDIRCPNVESCPA 517 Query: 467 QQLERLKHFVSRDAFNIEGLGKQ 489 Q ER+ + SR AF+IE LG Q Sbjct: 518 QLTERIINLASRKAFDIEHLGDQ 540 Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 101/186 (54%), Gaps = 15/186 (8%) Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 + D ++K R+ L R + +L IR +G AR++A + + + I H + D LS Sbjct: 711 MLDEMDKARHADLWRVLVALSIRRLGPPTARTIASAFGTL--------DAIEHASVDELS 762 Query: 598 LIRVPLVGDIIAQAIVEFY---QNPRNI-CAVEALLKEVSPSIGRHEKN-VSSEIENKKL 652 ++ +G IA+++V ++ + P N AV K +G+ + + + + K + Sbjct: 763 --QIDGIGSEIAESVVTWFTAAREPGNWRGAVLDAWKAAGVGVGQAQASGLPQTLAGKTV 820 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG+L+ R A+E + G + +S+KTD ++VG+N GSK KA++LG+ ++NE+ Sbjct: 821 VVTGSLEGFSRDSAKEAIVLRGGKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLNED 880 Query: 713 QFLFLL 718 QF LL Sbjct: 881 QFKQLL 886 >gi|315452902|ref|YP_004073172.1| DNA ligase [Helicobacter felis ATCC 49179] gi|315131954|emb|CBY82582.1| DNA ligase [Helicobacter felis ATCC 49179] Length = 733 Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 221/742 (29%), Positives = 350/742 (47%), Gaps = 115/742 (15%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P++ D EYD L ++ HA P+ P ++G + L K TH Sbjct: 22 YYVLDDPLVSDFEYDTLYQQIQDYEHAHPEQILEHSPT---QRVGDALLSYLPKHTHLER 78 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++++E L+ +I RI++ + FT PK+DG + + Y++GK V A R Sbjct: 79 MWSLDNVFDLEGLQTWIARIFKVYPHAR-----FTCSPKLDGVSLNLFYDQGKLVSATTR 133 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 G+G GE V+ + IP+IP L + E +E+RGEV I DF +N E + + +A Sbjct: 134 GNGIEGELVTHIAKTIPSIP--LRIAPTEPLEIRGEVTIENADFEKINAERAKLNQPLFA 191 Query: 215 NPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNG 271 NPRNAA+G LR+L+P R L+F GLG+ + K + L + L P + Sbjct: 192 NPRNAAAGSLRQLDPRISAKRKLSFTPWGLGRCAPTLPSFKAMMDCLLENHFLPMPFS-- 249 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + I Y E+ + R +DG+V VD+F++QK+LG ++PR+ I++KF Sbjct: 250 --LCGSVEEIQQVYTELHAQRERAKVGMDGMVVVVDDFAMQKELGFTLKAPRFAIAYKFP 307 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + TRLL++ Q+GR+G +TPVARLEPVN+ GA I ATL++ I+ Sbjct: 308 ALEKHTRLLEVIAQVGRSGAITPVARLEPVNLDGAQIARATLNSYTDIQ----------- 356 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR-------- 443 +D+++ D V+V R+G+VIP+V+ +V+ R +P P+ CP C+S + + Sbjct: 357 QKDLQLNDMVVVLRSGDVIPQVIKPLVHLRDGSQKPIIPPNHCPSCESLLEQQPLNICPQ 416 Query: 444 -----------DLNPKTGKLVA----------------------AHRCTGGL-------- 462 + P + +RC L Sbjct: 417 CHLPLLLKDKPNFCPSCARFAPHAHLKNARSCPSCAQALEYKPFCYRCNLDLSAHARALC 476 Query: 463 ----ACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQ 518 +CSA+ L +F S+ I GLG D K A I +D++TL Sbjct: 477 CVNPSCSAKLHASLVYFASKQGLEIAGLG----DKVVKQLLEAKLISQISDLYTL----- 527 Query: 519 TSTTKIENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK--- 572 ++E++L G+ NL D+I K ++ L RFI +LGI ++G ++ LA Sbjct: 528 ----RLEDLLQLEGWKHKRAQNLLDAIAKTKHAPLWRFINALGIENIGKGASKKLAGILG 583 Query: 573 ---YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI-IAQAIVEFYQNPRNICAVEAL 628 + Y + + I +D GD A+A EF Q R + L Sbjct: 584 LEVFDQDYSGYQRAFKKIFQGAREDQ--------KGDYKSARAFWEFVQTHR--AKIAHL 633 Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 ++ + P+I + K +V TG+ I R ++Y+ LGA V LS KTD++ Sbjct: 634 MRLIEPTIAEKRAPQCGFFQGKVVVITGSF-SIPRDALRQYLEDLGAEVKGHLSAKTDLL 692 Query: 689 IVGDNPGSKLEKAQQLGVKIMN 710 + GD PGSKLE+A++ + IM Sbjct: 693 LCGDKPGSKLEEAKKHNISIMG 714 >gi|326775447|ref|ZP_08234712.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1] gi|326655780|gb|EGE40626.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1] Length = 712 Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 203/710 (28%), Positives = 338/710 (47%), Gaps = 78/710 (10%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D YD L R A P+ ++ P G K+ G ++ V H++P LSL+ +++ Sbjct: 41 DDAYDRLARGIAAYEADHPEEVLADSPTG---KVAG--GAAVGDVPHTVPMLSLDNVFSA 95 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164 E +F+T ++ +++EPK+DG + RY G+F RGDG +GEDVS Sbjct: 96 E---QFVTWTASLERRIGRPVTAWSVEPKLDGLAVAARYRDGRFERLITRGDGTAGEDVS 152 Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224 A+ +P L+ P IEVRGE+ ++ F N G P+ANPRN A+G L Sbjct: 153 HAAGAVVGLPERLAE--PVTIEVRGEILMTNEQFAQGNAIRTEYGGAPFANPRNGAAGTL 210 Query: 225 R---RLNPTDITRYLNFFVHGL------GKTSEIFAKGQY-EMLQKMRCLGFPVNNGVR- 273 R R + T FF +G G+ E A+ + E+L + LG G Sbjct: 211 RAKDRAYRVETT----FFAYGALPLPDSGELGETLAELPHSEVLAYVAGLGVHTAAGTAV 266 Query: 274 ---QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 +A T + + + + ++R+ LP+ IDG+V K D + Q++ G R+PRW +++K Sbjct: 267 APLRATTVEEVQARVDGIGALRAALPFGIDGIVIKADLAADQQEAGSGTRAPRWAVAYKL 326 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 + TRLL ++ +GRTGI+ P A LEPV I G+ + ATLHN I Sbjct: 327 PAVEKITRLLAVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADIT---------- 376 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 RD+R+GD+V+V +AG++IP++ +V+ R D P +FP CP C S + D + + Sbjct: 377 -RRDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIAFPESCPQCGSEI--DASEQR- 432 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 RCT G C + + + + RD +IEGLG ++ A + AD+ Sbjct: 433 -----WRCTRGRDC--RLVASVSYAAGRDQLDIEGLGSTRVVQLVD----AGLVADFADL 481 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 FTL+R Q + ++ G+ S NL +I R L R +LG+R G ++R + Sbjct: 482 FTLRREQLLALDRM------GETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSRRI 535 Query: 571 AKYYLSYQNF----AQEINNIIAHNNDDWLSLIR-----VPLVGDIIAQAI------VEF 615 A+++ + A+ + + + +++ PL+G ++ + Sbjct: 536 ARHFATMDRIVAADAESLQRVDGIGKEKAAAVVAELVELAPLIGKLVVAGVSMTEPGATP 595 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT----GTLQKIQRHKAQEYVT 671 +P A + G + + +V T G L+K+ R++ E + Sbjct: 596 PPDPGTEEAAAPATADAGAPGGDAATGSALPLAGMTVVVTGAMSGALEKLSRNQMNELIE 655 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + G S+ +SR+T +++ G+ GSK KA+ LGV+I E+F L+ + Sbjct: 656 RAGGKSSSSVSRRTTLLVAGEKAGSKRAKAEDLGVRIAVPEEFAELVGAF 705 >gi|154488672|ref|ZP_02029521.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis L2-32] gi|154082809|gb|EDN81854.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis L2-32] Length = 890 Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 171/503 (33%), Positives = 267/503 (53%), Gaps = 43/503 (8%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 + + ++S E A + + + + YY P+ D+ YDA R ++ FP L Sbjct: 59 VDVASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSL- 117 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 + P P +++GG + V H +SL+ +++IE+LR++ + R + + Sbjct: 118 --DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELREWYDGVLRGLDWPESKPL 175 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPE 183 T E KIDG + + Y G RGDG +GED++ +R I TIP+ L+ +IPE Sbjct: 176 PMTCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPE 235 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHG 242 +E+RGEV++ +DF LN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG Sbjct: 236 FVEIRGEVFMRWDDFNKLNAENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHG 295 Query: 243 LGK---------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKS 290 +G Q E + + G PV+ R+ +F I + YY E Sbjct: 296 IGSLRWGAGHAGNGHDVVNDQSEAYELYKKWGVPVSPHNREVTSFKEILDMIDYYGEH-- 353 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG Sbjct: 354 -RGDIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTG 412 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVA L+PV + G+ ++ TLHN +V R G + +GD V+V++AG+VI Sbjct: 413 RVTPVAVLKPVYVAGSTVSRTTLHN---------PFEVERKG--VLIGDTVVVRKAGDVI 461 Query: 411 PKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSA 466 P++V ++ R + F P+ CP C + +L P K G RC +C A Sbjct: 462 PELVGPVLERRKGREGQIRRFVMPTRCPSCGA----ELAPAKEGD--KDIRCPNVESCPA 515 Query: 467 QQLERLKHFVSRDAFNIEGLGKQ 489 Q ER+ + SR AF+IE LG Q Sbjct: 516 QLTERIINLASRKAFDIEHLGDQ 538 Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 101/186 (54%), Gaps = 15/186 (8%) Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 + D ++K R+ L R + +L IR +G AR++A + + + I H + D LS Sbjct: 709 MLDEMDKARHADLWRVLVALSIRRLGPPTARTIASAFGTL--------DAIEHASVDELS 760 Query: 598 LIRVPLVGDIIAQAIVEFY---QNPRNI-CAVEALLKEVSPSIGRHEKN-VSSEIENKKL 652 ++ +G IA+++V ++ + P N AV K +G+ + + + + K + Sbjct: 761 --QIDGIGPEIAESVVTWFTAAREPGNWRGAVLDAWKAAGVGVGQAQASGLPQTLAGKTV 818 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG+L+ R A+E + G + +S+KTD ++VG+N GSK KA++LG+ ++NE+ Sbjct: 819 VVTGSLEGFSRDSAKEAIVLRGGKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLNED 878 Query: 713 QFLFLL 718 QF LL Sbjct: 879 QFKQLL 884 >gi|257793742|ref|ZP_05642721.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781] gi|257787714|gb|EEV26054.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781] Length = 425 Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 164/456 (35%), Positives = 257/456 (56%), Gaps = 44/456 (9%) Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 GF N + N G++ Y + S R +LPYDIDG+V KV++ Q ++G +SPRW Sbjct: 1 GFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRW 60 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 I++KF ++ T+LLDI++ IGRTG++TP A LEPV + G ++ A+LHNED I Sbjct: 61 AIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIH---- 116 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 RDIR+GD V+VK+AG++IP+VV I R DA + P+ CP C +VR Sbjct: 117 -------DRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCGHELVR- 168 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 G++ A RC C AQ +E L HFVSR A NI+GLG + + ++SE I Sbjct: 169 ---IEGEV--ALRCINP-KCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSE----LI 218 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 + ADIF L ++ G V NL +I + ++ SLE +F LGIRH+G Sbjct: 219 KDVADIFYLTEEDLLPLDRM------GQKKVDNLLAAIQQAKDNSLENLLFGLGIRHLGV 272 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 + ++ LA+ Y + I+ ++ + L+ + +GD +AQ++V + +N +I A Sbjct: 273 KASQVLAEKY-------ETIDRLLTVTEAE---LVEIHDIGDKVAQSVVTYLEN-EDIRA 321 Query: 625 VEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSA 679 + LK+ + I + E K +V TG L ++ R++A +++ GA V++ Sbjct: 322 LIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQGAKVTS 381 Query: 680 ILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +++ TD++I G++ GSKL KAQ LG++I E+QF+ Sbjct: 382 SVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFV 417 >gi|311747945|ref|ZP_07721730.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1] gi|126574918|gb|EAZ79276.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1] Length = 791 Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 166/481 (34%), Positives = 258/481 (53%), Gaps = 32/481 (6%) Query: 40 KPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLE 99 + +I D E+D L + FPDL + P+ P ++GG + V H+ LSL Sbjct: 4 QAVISDFEFDKLLEELVQLETEFPDLLQ---PDSPSQRVGGTITKEFETVVHAYKMLSLG 60 Query: 100 KIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHS 159 ++ E+L F R+ + N + E K DG I++ YE GK V A RGDG Sbjct: 61 NTYSKEELIAFDERVQKGL---GGNPYEYFCEMKFDGVAISLVYENGKLVRAVTRGDGTR 117 Query: 160 GEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 G+DV+A +R I IP V IPE EVRGE+++ +F +N E G ANPRN Sbjct: 118 GDDVTANVRTIRNIPLYVKGDKIPERFEVRGEIFLPHREFEKINAERNENGEALMANPRN 177 Query: 219 AASGILRRLNPTDIT-RYLN-FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN 276 AASG L+ + + + R LN +F LG+ +I E + + GF V+ R+ N Sbjct: 178 AASGTLKMQDSSVVAKRRLNCYFYQLLGE--DIGVNAHDEAISLIESWGFNVSPTYRKTN 235 Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336 T +++Y + + R TLP D DG+V K++++ +++LG A++PRW I++K+ + + Sbjct: 236 TIEDVLTYIEDWREKRFTLPLDTDGVVLKINDYEQREELGFTAKNPRWAIAYKYKAESSE 295 Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396 T LL + Q+GRTG +TPVA L PV++ G + A+LHN + I+ L + Sbjct: 296 TELLSVTYQVGRTGAITPVANLAPVSLAGTTVKRASLHNANEIERL-----------GLH 344 Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAH 456 GD V V++ GE+IPK+ + + +R PD++P + S CP C + + R K G+ A H Sbjct: 345 TGDVVFVEKGGEIIPKITGVSLEQRKPDSKPIEYISECPECGTPLER----KEGE--AKH 398 Query: 457 RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRR 516 C C Q L R++HFV + A +I+ LG +++ D F I+ PADI+ L+ + Sbjct: 399 FCPNASNCPPQVLGRIEHFVHKRAMDIDSLGTERIRALI---DQGF-IQNPADIYDLESK 454 Query: 517 Q 517 Q Sbjct: 455 Q 455 Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 101/194 (52%), Gaps = 13/194 (6%) Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 F + ++N+ + I + E+ +F+LG+R++G A LA+++ S Sbjct: 608 FQEGVISNMMEGIAASKKQPFEKVLFALGVRNIGENTAALLAQHFGSIDKL--------- 658 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS--SEI 647 N L+ + VG+ + Q+I EF+ N+ + L K + VS + + Sbjct: 659 -NEASTEELLEINGVGETLVQSIHEFFSRQENLDIISRLKKSGLQFDAEQIETVSLGNAL 717 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706 E KK++ +G L + +R + +++ G + +S+K D II G++ G SK EKAQ+LG+ Sbjct: 718 EGKKILASGKLNQFKRDEIVDFIKSHGGQYVSSVSKKLDFIIEGEDMGPSKKEKAQKLGI 777 Query: 707 KIMNEEQFLFLLQQ 720 +++EE FL +L++ Sbjct: 778 PLISEEDFLKMLEE 791 >gi|68171542|ref|ZP_00544921.1| DNA ligase (NAD+) [Ehrlichia chaffeensis str. Sapulpa] gi|67999047|gb|EAM85719.1| DNA ligase (NAD+) [Ehrlichia chaffeensis str. Sapulpa] Length = 366 Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 158/382 (41%), Positives = 232/382 (60%), Gaps = 26/382 (6%) Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 +A T+L I IQIGRTG+LTP+A L P+NIGG ++T A+LHN++ I+ + Sbjct: 3 EAKTQLNKISIQIGRTGVLTPIAELSPINIGGVIVTRASLHNKNEIER-----------K 51 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIR GD V+VKRAG+VIP++VD+ N R + F FP+ CP C S V + K Sbjct: 52 DIREGDYVIVKRAGDVIPQIVDVDKNLRTQELTKFVFPTTCPSCGSSVYQ------AKQE 105 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A+ CTG L C Q LE++KHFVS+DAFNI G GK+QL FF++ I DIFTL Sbjct: 106 ASIYCTGELFCKDQILEKIKHFVSKDAFNIIGFGKKQLLFFYEQR----LITNITDIFTL 161 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + + S K+E++ G+G+ S++NL+ +IN + ISLE FIF+LGIR +G IA+ LA + Sbjct: 162 EEKISNSDVKLESLHGWGEKSMSNLFSAINNSKVISLENFIFALGIRFIGKYIAKILANH 221 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + SY+ + E+ +A N D L+ + +G ++ F+ P N+ + L+K ++ Sbjct: 222 FSSYETWYNEMLK-LAQNEDYSLN---IQQIGSKTIGSLKMFFSQPHNLNMINDLVKHLT 277 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 + + S I K +VFTG L + R +A+ GA VS+ LS+ TD +I G+N Sbjct: 278 IT-DTQSSSYLSLIHGKIIVFTGELSSMSRSEAKIRSETAGAKVSSSLSKNTDFLIAGNN 336 Query: 694 PGSKLEKAQQLGVKIMNEEQFL 715 PGSK +KAQ L V+I+ E+ +L Sbjct: 337 PGSKYKKAQSLNVQILTEDLWL 358 >gi|183601766|ref|ZP_02963136.1| LigA [Bifidobacterium animalis subsp. lactis HN019] gi|219683704|ref|YP_002470087.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis AD011] gi|241190736|ref|YP_002968130.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196142|ref|YP_002969697.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254781258|sp|B8DU32|DNLJ_BIFA0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|183219372|gb|EDT90013.1| LigA [Bifidobacterium animalis subsp. lactis HN019] gi|219621354|gb|ACL29511.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis AD011] gi|240249128|gb|ACS46068.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250696|gb|ACS47635.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793725|gb|ADG33260.1| LigA [Bifidobacterium animalis subsp. lactis V9] Length = 863 Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 169/512 (33%), Positives = 272/512 (53%), Gaps = 45/512 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L++EQA + S L + YY P+ D+ YDA + FP L Sbjct: 40 VSKLNVEQAVRLWSRLSAWVEGDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQL--- 96 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P P +++GG + V H +SL+ +++ E+LR + + + + +D + Sbjct: 97 DTPQSPTHRVGGTFSNDFTAVRHPSQMMSLDDVFSFEELRAWYDGVRKDLEWPEDKLLPM 156 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEII 185 T E KIDG + + Y G RGDG +GED++ +R I +IP L +IP+++ Sbjct: 157 TCEVKIDGLALNLIYRNGVLTQGLTRGDGVTGEDITMNVRTIHSIPTNLDGPEGDIPDMV 216 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF LN+ GR P+ANPRNAA+G LR+ +P R+L+F+ HG+G Sbjct: 217 EIRGEVFMRWDDFHKLNEANEDAGRPPFANPRNAAAGSLRQKDPRITAQRHLSFYAHGIG 276 Query: 245 KTSEIFAKG-----------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKS 290 + ++ G Q + R G P++ R+ F I + YY E Sbjct: 277 EL--VWGSGKPVDVADEVRNQSDAYTMYRKWGVPISPHNREVTDFDQILDMIEYYGEH-- 332 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R + + +DG+V KVD+ +LQ++LG +R+PRW I++K+ ++ +T+LL+I +Q+GRTG Sbjct: 333 -RGDIEHALDGIVVKVDDLALQRRLGSTSRAPRWAIAYKYPPEEVNTKLLNIVVQVGRTG 391 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVA L PV + G+ ++ TLHN + +V R G I +GD V+V++AG+VI Sbjct: 392 RVTPVAILNPVYVAGSTVSRTTLHN---------AYEVKRKG--ILIGDTVVVRKAGDVI 440 Query: 411 PKVVDIIVNER---HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 P++V ++ +R D + F P+ CP C + V+R L RC +C AQ Sbjct: 441 PELVGPVIAKREGHEQDLREFVMPTRCPSCDT-VLRYEKEGDKDL----RCPNSESCPAQ 495 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 ER+ + +R AF+IE LG Q ED Sbjct: 496 LAERVINLAARKAFDIEHLGDQSAVALTNPED 527 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 14/185 (7%) Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 + D I K ++ L R + +L IRHVG A +LAK++ + A Sbjct: 683 MLDEIEKAKHTDLSRVLVALSIRHVGPPTAFTLAKHFKTLDALADASAE----------E 732 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLV 653 L ++ +G IA +I F++ R + E + G H++ + +E K +V Sbjct: 733 LEQIDGIGAEIADSIATFFEEARMPGNWRGRVLEAWKAAGVGMSTHDEGLPQTLEGKSVV 792 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGTL+ R A+E + + G S +SRKTD ++VG NPGSK KA++LG+ I++E+Q Sbjct: 793 VTGTLEHFSRESAKEAIERRGGKASGSVSRKTDWVVVGANPGSKATKAEELGIPIIDEQQ 852 Query: 714 FLFLL 718 F LL Sbjct: 853 FDTLL 857 >gi|1770452|emb|CAA66920.1| ligase-like protein [Homo sapiens] Length = 454 Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 166/479 (34%), Positives = 256/479 (53%), Gaps = 39/479 (8%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + PIE LS A++E++ L+ +++ + YY+ P++ D YDAL R A+ AFP Sbjct: 4 EFTPIEQLSTSAAQQEVAQLQADLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAFPQ 63 Query: 65 LARSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 + P +GG + S L KV H P LSL ++++E+L W ++ Sbjct: 64 FVTQDSPT---QNVGGALTKSGLAKVEHPAPMLSLGDVFSLEELAA--------WDERTT 112 Query: 124 NSIFF----TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 S+ F LE KIDG + + Y G+ V A+ RG+G GEDV+ ++ I IP+ L Sbjct: 113 KSLGFQSPYNLELKIDGLAVALTYVDGRLVQASTRGNGTIGEDVTRNVKTIKAIPQ--QL 170 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLN 237 P IEVRGE+Y+ K F ALN + A G +P+ANPRNAA+G LR+L+ +T R L+ Sbjct: 171 TEPLTIEVRGEIYMPKKSFAALNVQREADGLEPFANPRNAAAGSLRQLD-AQVTKQRELS 229 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 FV+ + + Q L + LG P + + I + + R TL Y Sbjct: 230 AFVYYTAEPEVLGVTTQSGALARFAELGLPTDTHNQVIEKMADIADFIATYTAKRDTLAY 289 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 IDG+V KV+ Q +LG + PRW I++KF ++A T + DI+ +GRTG +TP A Sbjct: 290 GIDGVVVKVNALDNQVELGNTVKIPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAI 349 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 ++PV + G + A+LHN DY++ +DIR+GD V + +AG++IP+V +I Sbjct: 350 MDPVQLAGTTVQRASLHNPDYLQ-----------QKDIRIGDTVTLHKAGDIIPEVGQVI 398 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 +++R D+ + P CP C S +V +G++ A RC C+AQ E L H + Sbjct: 399 LSQRPADSIAYPIPVACPACGSELVH----ISGEV--ALRCINPF-CAAQIQEGLTHLL 450 >gi|261337889|ref|ZP_05965773.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093] gi|270277364|gb|EFA23218.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093] Length = 906 Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 171/521 (32%), Positives = 280/521 (53%), Gaps = 48/521 (9%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 K + + + AL E+AR + + YY S PI D+ YDA R +A+ A+ Sbjct: 27 KLETVDVPALGAERARTLWRKVASWVEADQVAYYIDSAPISSDAAYDARLRFLEAMERAY 86 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L + P+ P +++GG + V LSL+ +++I++LR++ + Q + Sbjct: 87 PEL---DVPSSPTHRVGGSFSNEFVSVPQPSQMLSLDDVFSIQELREWYEGVRADLQWPE 143 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--- 179 + T E KIDG + + Y G RGDG GED++ +R I +IP L+ Sbjct: 144 GERLPMTCEVKIDGLALNLIYRDGVLSQGLTRGDGKIGEDITLNVRTISSIPGNLTEAGA 203 Query: 180 ---NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRY 235 +IP ++E+RGEV++ + F ALN+ G+ P+ANPRNAA+G LR+ +P R+ Sbjct: 204 SLGDIPHMVEIRGEVFMRWDTFHALNERNEQDGKTPFANPRNAAAGSLRQKDPRITAERH 263 Query: 236 LNFFVHGLGKTSEIFAKGQ--------------YEMLQKMRCLGFPVNNGVRQANTFHGI 281 L+F+ HG+G + +G+ Y++ Q+ G PV+ R TF I Sbjct: 264 LSFYAHGIGTLD--WGEGKPVDAVDVVHDQSQAYDLYQRW---GIPVSPHNRMVGTFDEI 318 Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341 + + R + + +DG+V KVD+ +LQ++LG+ +R+PRW I++K+ ++ T+L D Sbjct: 319 LDMIDYYGQHRDDIEHPLDGIVVKVDDLALQRRLGQTSRAPRWAIAYKYPPEEVHTKLRD 378 Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401 I +++GRTG +TP A L+PV + G+ ++ TLHN +V R G I +GD V Sbjct: 379 IIVEVGRTGRITPAAVLDPVYVAGSTVSRTTLHN---------GYEVKRKG--ILIGDIV 427 Query: 402 LVKRAGEVIPKVVDIIVNER--HPDA-QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458 +V++AG+VIP++V ++ R H D + F P+ CP C + + D+ + GK + RC Sbjct: 428 VVRKAGDVIPELVGPVIEARKGHEDQLREFQMPTTCPSCGATLEYDM--EGGKDL---RC 482 Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 +C AQ ER+ + SR AF+IE LG+Q ED Sbjct: 483 PNHESCPAQLTERIINMGSRKAFDIEQLGEQSAVALTNPED 523 Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 112/221 (50%), Gaps = 17/221 (7%) Query: 506 IPADIFTLQRRQQT--STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 +PAD + R + T ++ + +L + I ++ L+R + +L IRHVG Sbjct: 680 VPADAVIVDERTKRVRGETSVQPQYVCPSETTRSLLEEIEHAKHAELDRVLVALSIRHVG 739 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 AR +A+ + + + + H + D L VP +G +AQAI++++ + + Sbjct: 740 PPTARLIAQRFGTL--------DALMHASKD--ELESVPGIGSEVAQAILDWFADADDPT 789 Query: 624 AVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 + + + G K S +E K +V TG+LQ+ R A+E + G + Sbjct: 790 SWHGSILARWKAAGVEMKAPESSSLPKTLEGKTVVVTGSLQQFTRDSAKEAIVNRGGKAA 849 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +S+KTD +++G+ GSK +KA++LG+ +++E QF+ LL+ Sbjct: 850 GSVSKKTDYVVIGEAAGSKAKKAEELGIPMLDEAQFVHLLE 890 >gi|320094066|ref|ZP_08025884.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str. F0338] gi|319979007|gb|EFW10532.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str. F0338] Length = 776 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 160/462 (34%), Positives = 250/462 (54%), Gaps = 28/462 (6%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P + D+EYD L R + I A P L R D P +GG + + V H Sbjct: 27 AYYDRDAPTLADAEYDRLYRELEDIERAHPQL-RGAD--SPTLSVGGSADSAFAPVRHLQ 83 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 SL+ ++++E+L + R++ ++ + + T E K+DG + + Y G AA Sbjct: 84 QMTSLDDVFSLEELAGWEQRMH---EETGEAELPMTAEVKVDGLAVNLLYVDGALRRAAT 140 Query: 154 RGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDGH GED++A +R I +IP R+ + P +E+RGEVY +F + N+ +A G + Sbjct: 141 RGDGHVGEDITANVRTIASIPARLDTAAPPRRVEIRGEVYFPVAEFASFNEARVAAGERA 200 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLG--KTSEIFA--KGQYEMLQKMRCLGFP 267 + NPRNAA+G LR+ + ++ R L HG+G + F Q+ Q +R G P Sbjct: 201 FVNPRNAAAGSLRQKDSSETAKRPLAMVAHGVGFVEAGGAFTPPTTQHGWYQLLREWGMP 260 Query: 268 VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 V+ R I + E R +L ++IDG+V K+D+ +LQ+ LG +R+PRW + Sbjct: 261 VSPYTRLLTGRGAIEEFIAETGEARHSLAHEIDGVVVKIDDLALQRSLGSTSRAPRWAAA 320 Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387 +KF ++ TRLLDI +Q+GRTG +TP +E V + G+ + ATLHN +K Sbjct: 321 YKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMESVLVAGSNVARATLHNAQEVK------- 373 Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447 R G + +GD V++++AG+VIP++V + R+ + FS P+ CP C + +V + Sbjct: 374 --RKG--VLIGDLVVLRKAGDVIPEIVAPVEEARNGSEREFSMPAACPSCGTALVEE--- 426 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 K G + RC AC AQ ER+ H +R A +IEGLG + Sbjct: 427 KEGDV--DLRCPNKAACPAQITERIAHIGARSALDIEGLGDE 466 Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 20/190 (10%) Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIAHNND 593 +T + D + + ++ L R + +L IRHVG AR+LA + S A ++ + A + Sbjct: 594 LTQMLDEMERAKSQPLARVLVALSIRHVGPTAARALAARFGSMDALRAADVEELAAVDG- 652 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI----EN 649 VG +IAQ++ ++++ + +L+ S + R E E+ E Sbjct: 653 ----------VGGVIAQSLADWFE----VDWHREILRRWSEAGVRMEDEAPEEVPAVLEG 698 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 +V +G + R A+E +T G S +S+KT +++ G GSK KA+ LGV ++ Sbjct: 699 LTIVVSGAMPGYDREGAKEAITARGGKASGSVSKKTSLVVAGPGAGSKAAKAESLGVPVI 758 Query: 710 NEEQFLFLLQ 719 +E QF LL+ Sbjct: 759 SEAQFADLLE 768 >gi|289178474|gb|ADC85720.1| NAD-dependent DNA ligase [Bifidobacterium animalis subsp. lactis BB-12] Length = 889 Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 169/512 (33%), Positives = 272/512 (53%), Gaps = 45/512 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L++EQA + S L + YY P+ D+ YDA + FP L Sbjct: 66 VSKLNVEQAVRLWSRLSAWVEGDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQL--- 122 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P P +++GG + V H +SL+ +++ E+LR + + + + +D + Sbjct: 123 DTPQSPTHRVGGTFSNDFTAVRHPSQMMSLDDVFSFEELRAWYDGVRKDLEWPEDKLLPM 182 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL---NIPEII 185 T E KIDG + + Y G RGDG +GED++ +R I +IP L +IP+++ Sbjct: 183 TCEVKIDGLALNLIYRNGVLTQGLTRGDGVTGEDITMNVRTIHSIPTNLDGPEGDIPDMV 242 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF LN+ GR P+ANPRNAA+G LR+ +P R+L+F+ HG+G Sbjct: 243 EIRGEVFMRWDDFHKLNEANEDAGRPPFANPRNAAAGSLRQKDPRITAQRHLSFYAHGIG 302 Query: 245 KTSEIFAKG-----------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKS 290 + ++ G Q + R G P++ R+ F I + YY E Sbjct: 303 EL--VWGSGKPVDVADEVRNQSDAYTMYRKWGVPISPHNREVTDFDQILDMIEYYGEH-- 358 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R + + +DG+V KVD+ +LQ++LG +R+PRW I++K+ ++ +T+LL+I +Q+GRTG Sbjct: 359 -RGDIEHALDGIVVKVDDLALQRRLGSTSRAPRWAIAYKYPPEEVNTKLLNIVVQVGRTG 417 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TPVA L PV + G+ ++ TLHN + +V R G I +GD V+V++AG+VI Sbjct: 418 RVTPVAILNPVYVAGSTVSRTTLHN---------AYEVKRKG--ILIGDTVVVRKAGDVI 466 Query: 411 PKVVDIIVNER---HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 P++V ++ +R D + F P+ CP C + V+R L RC +C AQ Sbjct: 467 PELVGPVIAKREGHEQDLREFVMPTRCPSCDT-VLRYEKEGDKDL----RCPNSESCPAQ 521 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 ER+ + +R AF+IE LG Q ED Sbjct: 522 LAERVINLAARKAFDIEHLGDQSAVALTNPED 553 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 14/185 (7%) Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 + D I K ++ L R + +L IRHVG A +LAK++ + A Sbjct: 709 MLDEIEKAKHTDLSRVLVALSIRHVGPPTAFTLAKHFKTLDALADASAE----------E 758 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG----RHEKNVSSEIENKKLV 653 L ++ +G IA +I F++ R + E + G H++ + +E K +V Sbjct: 759 LEQIDGIGAEIADSIATFFEEARMPGNWRGRVLEAWKAAGVGMSTHDEGLPQTLEGKSVV 818 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGTL+ R A+E + + G S +SRKTD ++VG NPGSK KA++LG+ I++E+Q Sbjct: 819 VTGTLEHFSRESAKEAIERRGGKASGSVSRKTDWVVVGANPGSKATKAEELGIPIIDEQQ 878 Query: 714 FLFLL 718 F LL Sbjct: 879 FDTLL 883 >gi|218460243|ref|ZP_03500334.1| NAD-dependent DNA ligase LigA [Rhizobium etli Kim 5] Length = 327 Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 136/307 (44%), Positives = 202/307 (65%), Gaps = 4/307 (1%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ FP+L R Sbjct: 8 VDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +G +++ VTH+ P LSL+ ++ ED++ F+ +YRF + D SI F Sbjct: 68 DSPS---RHVGAAPSVTFSPVTHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P ++E+R Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G+ S Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ Q+ M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD Sbjct: 245 EMPEDTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304 Query: 308 EFSLQKQ 314 LQ++ Sbjct: 305 SLELQRR 311 >gi|54024876|ref|YP_119118.1| putative DNA ligase [Nocardia farcinica IFM 10152] gi|81374723|sp|Q5YVN7|DNLJ1_NOCFA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1 gi|54016384|dbj|BAD57754.1| putative DNA ligase [Nocardia farcinica IFM 10152] Length = 663 Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 218/695 (31%), Positives = 344/695 (49%), Gaps = 81/695 (11%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ P++ D+EYDA++ A+ A P+LA DPN PL+++G L V HS Sbjct: 20 AYYE-GAPLVADAEYDAVEDELRALIAAHPELA--PDPN-PLDQVGAPAVLHA-PVRHSR 74 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSLEK E + F RF + + PK+DG + + YE G+ V A Sbjct: 75 PMLSLEKATTPEQVAAFF---ERFPGQP------VVVMPKLDGLSLALVYEDGRLVRAVT 125 Query: 154 RGDGHSGEDVSACIRA-IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG +G+DV+ +RA + +P +++P +EVRGE + ++ FLA N A KP Sbjct: 126 RGDGTTGDDVTMLVRALVDGVPE--QIDVPGRVEVRGEAVMLRSTFLAYN---AAHPDKP 180 Query: 213 YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 NPRNAA+G LR +P + R L FF L T+E A ++ + +R LG Sbjct: 181 LINPRNAAAGTLRAKDPATVAERRLRFFGFDL-DTAEGGAAA--DLGEGLRALGI-AGAA 236 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 +R + +++ R+ L YDIDG V ++ + G R+ SPR ++ KFA Sbjct: 237 MRMCADAEQAQAAITDIERGRNDLDYDIDGAVLRLADRDAYAAAGTRSNSPRGALAFKFA 296 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ +T L + +G+TG + PVARLEPV +GG +T ATL N+ I+ Sbjct: 297 AEEKTTVLEAVTWDVGKTGKIVPVARLEPVFVGGTTVTKATLANQQVIR----------- 345 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPSFCPICQSRVVRDLNPKTG 450 RDI+VGD VLV+RAG+VIP V ++ + A+ P+ CP C V N + Sbjct: 346 ARDIKVGDTVLVRRAGDVIPFVAGVLDASKRTGAEVEIVPPTECPSCGQPVTEQGNSR-- 403 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 +L CT +C AQ + RL H+ SR A +I+ +G ++ + A + P+D Sbjct: 404 ELF----CTNA-SCPAQTVRRLIHWASRAAADIDAIGGVWIERLAE----AGILENPSDF 454 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 +TL + + +I G+VS T + +SI++ R++ L R + L I A L Sbjct: 455 YTLTKERLLEFDRI------GEVSATRMIESIDRSRDVGLRRALIGLAIPMASEGTAARL 508 Query: 571 AKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 A+ + S + A L+ V +G +A ++VE R L Sbjct: 509 ARAGFASLEEVADAGEE----------RLVAVEDIGPKVAASLVEHLTRLRPEL---ERL 555 Query: 630 KEVSPSIGRHEKNV------SSEIENKKLVFTGTL------QKIQRHKAQEYVTQLGAVV 677 +E S+ E+++ + + K +V TG + +K+ R Q + GA Sbjct: 556 RERGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEKVARPTFQRLCEKAGATA 615 Query: 678 SAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711 ++ +S TD++I G G SKL KA++LGV+I+++ Sbjct: 616 ASSVSANTDLLITGAGVGESKLAKAEKLGVEIVDQ 650 >gi|269219963|ref|ZP_06163817.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str. F0332] gi|269210599|gb|EEZ76939.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str. F0332] Length = 799 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 164/484 (33%), Positives = 258/484 (53%), Gaps = 42/484 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 AR+ + + +S Y+ +PI+ D YD L R + P+LA + P Sbjct: 14 ARERWNEIAPLVSSAQRAYHSGDEPIVTDEHYDRLVRELRRLEAEHPELAVD---SSPAQ 70 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 +G V H SL+ ++ ++DL++ W + + T E KIDG Sbjct: 71 SVGAPAAAGFENVAHLERLYSLQDVFTLDDLKE--------WYEGTAGAARCTAEVKIDG 122 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + +RY G+ V A RGDG +GEDV+A +R I ++P+ L + P+++E+RGEV+I Sbjct: 123 LAVNLRYVGGELVVGATRGDGVTGEDVTANVRTISSVPQSLRGDFPDVVEIRGEVFIPLA 182 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-------TSE 248 F + N A G K +ANPRNAA+G LR+ +P R L+F HG G+ E Sbjct: 183 KFDSFNARQRAAGLKEFANPRNAAAGSLRQKDPKVAAERPLDFIAHGAGRIDGTSSAVDE 242 Query: 249 IFA--KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 A KG YE+ Q+ G PV+ VR +++ + + E +RS L + IDG V+K+ Sbjct: 243 KLASQKGLYELFQEW---GVPVSPYVRLVSSWDDVEGFVREYADLRSDLIHGIDGAVFKI 299 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D + Q+ LG +R PRW +++K+ ++ TRLLDI +Q+GRTG +TP A ++PV + G+ Sbjct: 300 DSRAEQEDLGATSRVPRWAVAYKYPPEEVETRLLDIKVQVGRTGRVTPFAVMKPVTVAGS 359 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN +V R G + +GD V+V++AG+VIP+V+ + R + Sbjct: 360 TVAQATLHN---------PSEVARKG--VLIGDVVVVRKAGDVIPEVLGPVSALRDGSER 408 Query: 427 PFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 ++ PS CP C + +L P K G + RC +C AQ ER+ + SR A ++E Sbjct: 409 EWTMPSACPSCGT----ELAPAKDGDV--DIRCPNARSCPAQLAERVAYIGSRAALDVEA 462 Query: 486 LGKQ 489 LG++ Sbjct: 463 LGEE 466 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 12/180 (6%) Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + R L R I +L IRHVG A+++A + ++ A + ++ Sbjct: 619 LQAARTKELWRKIVALSIRHVGPTAAKAIASSF----------GSLSAAREASVEEMAQI 668 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 VG +IAQ+ ++++ P + VEA V + + ++ +V TG L Sbjct: 669 DGVGRVIAQSFLDWFDVPWHTEIVEAWEAAGVVFADEAAERQELPQTLKGMTVVATGALA 728 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +E + G + +S+KT ++VG NPGSK KA+ LGV ++E QF LL+ Sbjct: 729 GYTRDSVKEAIEARGGKAAGSVSKKTAAVVVGANPGSKAAKAEALGVPTLDEGQFEELLR 788 >gi|227546782|ref|ZP_03976831.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212744|gb|EEI80625.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 920 Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 171/504 (33%), Positives = 270/504 (53%), Gaps = 49/504 (9%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 54 VNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185 + E KIDG + + Y G RGDG +GED++ +R I +IP L ++P+ + Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFV 230 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGLG Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290 Query: 245 K----------TSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMK 289 + T ++ A Y++ K G PV+ R +F I + YY E Sbjct: 291 QLTWGADHPRGTHDVVADQSQAYDLYTKW---GVPVSPHNRAVTSFQEILDMIEYYGEH- 346 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 R + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRT Sbjct: 347 --RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRT 404 Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 G +TPVA L+PV + G+ + TLHN G + V R G I +GD V+V++AG+V Sbjct: 405 GRVTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--ILIGDTVVVRKAGDV 453 Query: 410 IPKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACS 465 IP++V ++ R + F P FCP C ++ L+P K G RC +C Sbjct: 454 IPELVGPVLERRKGREDQLREFVMPEFCPSCGAK----LSPAKEGD--KDIRCPNVESCP 507 Query: 466 AQQLERLKHFVSRDAFNIEGLGKQ 489 AQ ER+ SR AF+IE LG+Q Sbjct: 508 AQLTERVISLASRKAFDIEHLGEQ 531 Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 19/221 (8%) Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +PAD ++ +T+ T + + I+ G+ + ++D ++K R+ L R + +L IR + Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G AR +A + ++ A N L + VG IA+++V ++ R Sbjct: 765 GPPTARLIASA----------MGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREP 814 Query: 623 CAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 L + +G E SS + K +V TG+L+ R A+E + + G Sbjct: 815 GDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKA 874 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S+KTD +++G N GSK KA++LG+ +++E QF LL Sbjct: 875 AGSVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLL 915 >gi|23464680|ref|NP_695283.1| LigA [Bifidobacterium longum NCC2705] gi|81754681|sp|Q8G830|DNLJ_BIFLO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|23325242|gb|AAN23919.1| LigA [Bifidobacterium longum NCC2705] Length = 920 Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 171/504 (33%), Positives = 270/504 (53%), Gaps = 49/504 (9%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 54 VNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185 + E KIDG + + Y G RGDG +GED++ +R I +IP L ++P+ + Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFV 230 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGLG Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290 Query: 245 K----------TSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMK 289 + T ++ A Y++ K G PV+ R +F I + YY E Sbjct: 291 QLTWGPDHPRGTHDVVADQSQAYDLYTKW---GVPVSPHNRAVTSFQEILDMIEYYGEH- 346 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 R + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRT Sbjct: 347 --RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRT 404 Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 G +TPVA L+PV + G+ + TLHN G + V R G I +GD V+V++AG+V Sbjct: 405 GRVTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--ILIGDTVVVRKAGDV 453 Query: 410 IPKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACS 465 IP++V ++ R + F P FCP C ++ L+P K G RC +C Sbjct: 454 IPELVGPVLERRKGREDQLREFVMPEFCPSCGAK----LSPAKEGD--KDIRCPNVESCP 507 Query: 466 AQQLERLKHFVSRDAFNIEGLGKQ 489 AQ ER+ SR AF+IE LG+Q Sbjct: 508 AQLTERVISLASRKAFDIEHLGEQ 531 Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 19/221 (8%) Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +PAD ++ +T+ T + + I+ G+ + ++D ++K R+ L R + +L IR + Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G AR +A + ++ A N L + VG IA+++V ++ R Sbjct: 765 GPPTARLIASA----------MGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREP 814 Query: 623 CAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 L + +G E SS + K +V TG+L+ R A+E + + G Sbjct: 815 GDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKA 874 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S+KTD +++G N GSK KA++LG+ +++E QF LL Sbjct: 875 AGSVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLL 915 >gi|256545196|ref|ZP_05472562.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170] gi|256399237|gb|EEU12848.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170] Length = 668 Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 206/708 (29%), Positives = 350/708 (49%), Gaps = 80/708 (11%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGG 80 E++YH YY P + D EYD L + +L E G P ++GG Sbjct: 18 ELNYH---YYTLDNPTVSDGEYDKL----------YDELLNLEKKTGYVNEFSPTQRVGG 64 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDN---SIFFTLEPKI 134 + K H S +K N L+ +I R + + K ++ + F E K Sbjct: 65 AILDKFEKHFHITRLYSQDKSQNYTQLKDWIIRTKKLRDQYNKTHEDKLEELEFITEYKF 124 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I + YE G AA RGDG SGEDV+ + IPTIP + ++E++GE + Sbjct: 125 DGLTINLTYEDGLLKTAATRGDGISGEDVTKQVLTIPTIPT--KIKEKSLLEIQGEAVMP 182 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKG 253 + N+E P N RNAA+G +R L+ + R L + + + T+ + K Sbjct: 183 LSSLKKYNEE----NEIPLKNARNAAAGAIRNLDTSQTKKRNLKAYFYQIS-TNNLDFKT 237 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + E L+ ++ PV + F IV + +K R + DG+V KV++ Q+ Sbjct: 238 EEEKLEFLKEQKLPVYPYKKVIKKFDDIVKEIDFIKEERHHIDVLTDGVVIKVNDVKTQE 297 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG + PRW I++K+ ++ +T LLD+ +GR+G +TP+A LEPV+ G + ATL Sbjct: 298 VLGYTNKFPRWSIAYKYDPEEYTTTLLDVVWNVGRSGKVTPLAILEPVDFSGVTVQRATL 357 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 +N D ++R + +++G +V ++R+ +VIP+++ +V+E + + P Sbjct: 358 NNYD---------DILR--KKVKIGSKVFIRRSNDVIPEILG-VVDENQENTKEIEKPDK 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAH-RCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP C S ++ H C ++C+ Q R+ HF SRDA +IEGL ++ ++ Sbjct: 406 CPYCHSELIEG---------NVHIYCPNSISCTPQLKARMVHFASRDAMDIEGLSEKTIE 456 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 F I+ D++ L S + N+ F + NL ++I ++ L Sbjct: 457 LFINK----LGIKEIYDLYDL------SYDDLINLESFKEKKTNNLLNAIENSKSCELNH 506 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI ++GI +VG + AR LA+ Y S+ + DD LI + +G+ A+ I Sbjct: 507 FIHAIGIPNVGIKTARDLAEKYKSFDKLRE-------TKQDD---LIEIEDIGEKTAEDI 556 Query: 613 VEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 V+F+ + +++ LL + +I EK S+ ++ K+V TGT++ +R+ + + Sbjct: 557 VDFFNDSNIKKSLDILLSKGIKIKAIDTSEK--SNSLDGMKIVITGTIENYKRNDIKNLI 614 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM-NEEQFLFL 717 + V++ +S+ TD+++ G+ PGSK EKA++LGVKI+ N+E F FL Sbjct: 615 IENNGDVTSSVSKNTDLVLCGEKPGSKKEKAEKLGVKILENQELFEFL 662 >gi|317481657|ref|ZP_07940691.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA] gi|316916889|gb|EFV38277.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA] Length = 920 Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 171/504 (33%), Positives = 270/504 (53%), Gaps = 49/504 (9%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 54 VNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEII 185 + E KIDG + + Y G RGDG +GED++ +R I +IP L ++P+ + Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLVGPKEDVPDFV 230 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGLG Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290 Query: 245 K----------TSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMK 289 + T ++ A Y++ K G PV+ R +F I + YY E Sbjct: 291 QLTWGPDHPRGTHDVVADQSQAYDLYTKW---GVPVSPHNRAVTSFQEILDMIEYYGEH- 346 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 R + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRT Sbjct: 347 --RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRT 404 Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 G +TPVA L+PV + G+ + TLHN G + V R G I +GD V+V++AG+V Sbjct: 405 GRVTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--ILIGDTVVVRKAGDV 453 Query: 410 IPKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACS 465 IP++V ++ R + F P FCP C ++ L+P K G RC +C Sbjct: 454 IPELVGPVLERRKGREDQLREFVMPEFCPSCGAK----LSPAKEGD--KDIRCPNVESCP 507 Query: 466 AQQLERLKHFVSRDAFNIEGLGKQ 489 AQ ER+ SR AF+IE LG+Q Sbjct: 508 AQLTERVISLASRKAFDIEHLGEQ 531 Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 19/221 (8%) Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +PAD ++ +T+ T + + I+ G+ + ++D ++K R+ L R + +L IR + Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G AR +A + ++ A N L + VG IA+++V ++ R Sbjct: 765 GPPTARLIASA----------MGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREP 814 Query: 623 CAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 L + +G E SS + K +V TG+L+ R A+E + + G Sbjct: 815 GDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKA 874 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S+KTD +++G N GSK KA++LG+ +++E QF LL Sbjct: 875 AGSVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLL 915 >gi|239620760|ref|ZP_04663791.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132368|ref|YP_003999707.1| lig [Bifidobacterium longum subsp. longum BBMN68] gi|239516336|gb|EEQ56203.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772424|gb|ADQ01912.1| Lig [Bifidobacterium longum subsp. longum BBMN68] Length = 920 Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 171/504 (33%), Positives = 270/504 (53%), Gaps = 49/504 (9%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 54 VNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185 + E KIDG + + Y G RGDG +GED++ +R I +IP L ++P+ + Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFV 230 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGLG Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290 Query: 245 K----------TSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMK 289 + T ++ A Y++ K G PV+ R +F I + YY E Sbjct: 291 QLTWGPDHPRGTHDVVADQSQAYDLYTKW---GVPVSPHNRAVTSFQEILDMIEYYGEH- 346 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 R + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRT Sbjct: 347 --RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRT 404 Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 G +TPVA L+PV + G+ + TLHN G + V R G I +GD V+V++AG+V Sbjct: 405 GRVTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--ILIGDTVVVRKAGDV 453 Query: 410 IPKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACS 465 IP++V ++ R + F P FCP C ++ L+P K G RC +C Sbjct: 454 IPELVGPVLERRKGREDQLREFVMPEFCPSCGAK----LSPAKEGD--KDIRCPNVESCP 507 Query: 466 AQQLERLKHFVSRDAFNIEGLGKQ 489 AQ ER+ SR AF+IE LG+Q Sbjct: 508 AQLTERVISLASRKAFDIEHLGEQ 531 Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 19/221 (8%) Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +PAD ++ +T+ T + + I+ G+ + ++D ++K R+ L R + +L IR + Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G AR +A + ++ A N L + VG IA+++V ++ R Sbjct: 765 GPPTARLIASA----------MGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREP 814 Query: 623 CAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 L + +G E SS + K +V TG+L+ R A+E + + G Sbjct: 815 GDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKA 874 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S+KTD +++G N GSK KA++LG+ +++E QF LL Sbjct: 875 AGSVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLL 915 >gi|322689624|ref|YP_004209358.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F] gi|322691585|ref|YP_004221155.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|291516189|emb|CBK69805.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum F8] gi|320456441|dbj|BAJ67063.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460960|dbj|BAJ71580.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F] Length = 920 Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 171/504 (33%), Positives = 270/504 (53%), Gaps = 49/504 (9%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 54 VNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 DNPQSPTHRVGGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185 + E KIDG + + Y G RGDG +GED++ +R I +IP L ++P+ + Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFV 230 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGLG Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290 Query: 245 K----------TSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMK 289 + T ++ A Y++ K G PV+ R +F I + YY E Sbjct: 291 QLTWGPDHPRGTHDVVADQSQAYDLYTKW---GVPVSPHNRAVTSFQEILDMIEYYGEH- 346 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 R + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRT Sbjct: 347 --RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRT 404 Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 G +TPVA L+PV + G+ + TLHN G + V R G I +GD V+V++AG+V Sbjct: 405 GRVTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--ILIGDTVVVRKAGDV 453 Query: 410 IPKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACS 465 IP++V ++ R + F P FCP C ++ L+P K G RC +C Sbjct: 454 IPELVGPVLERRKGREDQLREFVMPEFCPSCGAK----LSPAKEGD--KDIRCPNVESCP 507 Query: 466 AQQLERLKHFVSRDAFNIEGLGKQ 489 AQ ER+ SR AF+IE LG+Q Sbjct: 508 AQLTERVISLASRKAFDIEHLGEQ 531 Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 19/221 (8%) Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +PAD ++ +T+ T + + I+ G+ + ++D ++K R+ L R + +L IR + Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G AR +A + ++ A N L + VG IA+++V ++ R Sbjct: 765 GPPTARLIASA----------MGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREP 814 Query: 623 CAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 L + +G E SS + K +V TG+L+ R A+E + + G Sbjct: 815 GDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKA 874 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S+KTD +++G N GSK KA++LG+ +++E QF LL Sbjct: 875 AGSVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLL 915 >gi|291456400|ref|ZP_06595790.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213] gi|291381677|gb|EFE89195.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213] Length = 930 Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 171/503 (33%), Positives = 267/503 (53%), Gaps = 47/503 (9%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + L+ E A + + + + YY P+ D+ YDA R + AFP L Sbjct: 54 VNTLNAEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQKLEAAFPSL--- 110 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 ++P P +++GG + V H +SL+ +++IE+L+ + + R D + Sbjct: 111 DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPDGKPLPM 170 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185 + E KIDG + + Y G RGDG +GED++ +R I +IP L +IP+ + Sbjct: 171 SCEVKIDGLALNLIYRGGVLEQGLTRGDGVTGEDITLNVRTIGSIPAQLGGPKEDIPDFV 230 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF LN+E GR +ANPRNAA+G LR+ +P TR L+F+ HGLG Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRALFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290 Query: 245 K----------TSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMK 289 + T ++ A Y++ K G PV+ R +FH I + YY E Sbjct: 291 QLTWGPDHPRGTHDVIADQSQAYDLYAKW---GVPVSPHNRSVTSFHEILDMIDYYGEH- 346 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 R + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRT Sbjct: 347 --RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRT 404 Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 G +TPVA L+PV + G+ + TLHN +V R G I +GD V+V++AG+V Sbjct: 405 GRVTPVAVLKPVYVAGSTVARTTLHN---------GFEVKRKG--ILIGDTVVVRKAGDV 453 Query: 410 IPKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSA 466 IP++V ++ R + + F P FCP C +++ K G RC +C A Sbjct: 454 IPELVGPVLERRKGRESELREFVMPEFCPSCGAKLA---PAKEGD--KDIRCPNVESCPA 508 Query: 467 QQLERLKHFVSRDAFNIEGLGKQ 489 Q ER+ SR AF+IE LG+Q Sbjct: 509 QLTERVISLASRKAFDIEHLGEQ 531 Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 21/234 (8%) Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISL 550 F S P + + PAD ++ +T+ T + ++ + G+ + ++D ++K R+ L Sbjct: 706 FVASRYPEYDV--PADAVIVRVDHKTTRTGVTDVPVYIRPGE-NTRKMFDEMDKARHADL 762 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R + +L IR +G AR +A + ++ A N L + VG IA+ Sbjct: 763 WRVLVALSIRRLGPPTARLIAS----------AMGSLGAIENATVEDLTAIDGVGPEIAE 812 Query: 611 AIVEFYQNPRNICAV--EALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHK 665 ++V ++ R E L + +G S+ + K +V TG+L+ R Sbjct: 813 SVVNWFAAAREPGDWRGETLRAWQAAGVGVDVAETSTLPQTLAGKTVVVTGSLEGYSRDS 872 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+E + + G + +S+KTD ++VG+N GSK KA++LG+ ++NE QF LL+ Sbjct: 873 AKEAIIERGGKAAGSVSKKTDYVVVGENAGSKAAKAEELGIPMLNEAQFAQLLE 926 >gi|82548271|gb|ABB82962.1| NAD-dependent DNA ligase [uncultured organism HF70_19B12] Length = 707 Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 221/746 (29%), Positives = 356/746 (47%), Gaps = 123/746 (16%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKI 78 E L EI H + YY Y++P I D+++D L +R I DP+ P L K+ Sbjct: 10 EADRLASEIQRHSELYYNYAEPEITDAQFDLLIQRLREI-----------DPSNPQLEKV 58 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + KV H P LSL+K +++ F+ Q+ F ++PK+DG+ Sbjct: 59 GADPAPGSVKVEHIYPMLSLDKANTPQEIAHFVNITSAATQR-------FVVQPKLDGSA 111 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I++ Y +G V A RG G GEDV+ +R IP NIP I+ RG ++ + + Sbjct: 112 ISLEYRRGMLVRAVTRGSGTRGEDVTRNVRRIP--------NIPNRIKWRGNCFV-RGEV 162 Query: 199 LALNDEMIAVGRKPYA----NPRNAASGILRRLNPTD---ITRYLNFFVHGL----GKTS 247 + L D R+ YA NPRN A+G LR+ NP L FF + + G + Sbjct: 163 VMLLDTY----RENYAEVAPNPRNLAAGALRQKNPESGKARAEDLRFFAYDVKFPEGASG 218 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTF-----------HGIVSYYNEMKSIRSTLP 296 E +K + + L + ++ A F ++S E R +P Sbjct: 219 E-ESKAPLNYIHDSQILEWLFTMDIQPAGRFVVEADDSDEVIELLISKTEEAIGSREEMP 277 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 ++IDGLV KVDE + + LGE A PRW ++ KF ++A+T ++ +D Q GRTG +TPVA Sbjct: 278 WEIDGLVIKVDELTKRPLLGETAHHPRWALAWKFPPEEATTVVMSVDWQTGRTGNVTPVA 337 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 R+ PV + G + N TLHN G+V R G +++GDRV++ R G+VIPK+ + Sbjct: 338 RVAPVMVSGVTVENTTLHN---------PGEVERLG--LKIGDRVMIVRRGDVIPKITKV 386 Query: 417 I--------VNERHPDAQPF----------SFPSFCPICQSRVVRDLNPKTGKLVAAHRC 458 I RH D PF PS CP C + +L+ + L +C Sbjct: 387 IGQATGTDLEGRRHSDGTPFHEALPERIDVEPPSVCPRCGT----NLHSEGAFL----KC 438 Query: 459 TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS---EDPAFSIRIP-ADIFTLQ 514 C ++ + + ++ + I+G+G++ + +S + A R+ AD+ +L+ Sbjct: 439 RNS-GCPSRVVRSILYWCK--SLEIDGVGEKLANQLVESGLAPELADLYRLSHADVLSLE 495 Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 R G+ S + D I +R +SL+ FI SLG+ +G EIA ++K Sbjct: 496 R--------------MGEKSARRVIDQIQSKRKMSLDHFIASLGLPRIGPEIASMISKEI 541 Query: 575 LSYQNFAQEINNIIA---HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL--L 629 + +NF +N + D L+ + +G+I+A+ ++ ++ N +E L L Sbjct: 542 KTIENFRNLVNTWSSGREETTDILPRLVAIDGIGEIVARLFLDGSKS--NWSQIEDLSSL 599 Query: 630 KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 E++P + E + L TG++ + ++ + G VVS++ SR D +I Sbjct: 600 LEITPM--QTENRSIGPLAGLTLCITGSMTRPRKEVELLIRSAGGKVVSSVSSR-LDYLI 656 Query: 690 VGDNPGSKLEKAQQLGVKIMNEEQFL 715 GD GSKLEKA +L V ++NEEQ + Sbjct: 657 AGDAAGSKLEKATRLQVSVLNEEQLM 682 >gi|225352232|ref|ZP_03743255.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157479|gb|EEG70818.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 909 Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 172/499 (34%), Positives = 266/499 (53%), Gaps = 40/499 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++S E A + + + + YY P+ D+ YDA R A+ FP L + Sbjct: 83 VSSISAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARIRCLQALEAQFPSLDSA 142 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +++GG + V H +SL+ ++++E+L ++ + R + + Sbjct: 143 QSPT---HRVGGTFSNDFASVRHPSRMMSLDDVFSLEELHEWYDGVIRGLDWPETKPLPM 199 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185 T E KIDG + + Y G RGDG GED++ +R I TIP+ L+ +IPE + Sbjct: 200 TCEVKIDGLALNLIYRNGVLEQGLTRGDGVIGEDITLNVRTISTIPQNLAGPEEDIPEFV 259 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF LN E GR P+ANPRNAA+G LR+ +P TR L+F+ HG+G Sbjct: 260 EIRGEVFMRWDDFNTLNKENEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 319 Query: 245 KTSEIFAKG--------QYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRS 293 +G Q E + G PV+ R+ TF I + YY E R Sbjct: 320 TLQWGAKRGADHDAVNNQSEAYGLYKKWGIPVSPHNREVTTFSQILDMIDYYGEH---RG 376 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG +T Sbjct: 377 DIEHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVT 436 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L+PV + G+ ++ TLHN +V R G + +GD V+V++AG+VIP++ Sbjct: 437 PVAILKPVYVAGSTVSRTTLHN---------PFEVERKG--VLIGDTVVVRKAGDVIPEL 485 Query: 414 VDIIVNER--HPDA-QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 V ++ R H D + F PS CP C +++ K G RC +C AQ E Sbjct: 486 VGPVLERREGHEDQLRRFVMPSQCPSCGAQLA---PAKEGD--KDIRCPNVESCPAQLTE 540 Query: 471 RLKHFVSRDAFNIEGLGKQ 489 R+ + SR AF+IE LG Q Sbjct: 541 RIINLASRKAFDIEHLGDQ 559 Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 15/187 (8%) Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 + D I+K R+ L R + +L IR +G AR +A + S + I + D LS Sbjct: 729 MLDEIDKARHADLWRVLVALSIRRLGPPTARVIANTFGSL--------DAIERASVDELS 780 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSS---EIENKKL 652 ++ +G IA+++V ++ + + + E + +G + +S+ +E K + Sbjct: 781 --QIDGIGPEIAESVVTWFASAKEPGDWRGTVLEAWKAAGVGAEQVEISTLPQTLEGKTV 838 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG+L R A+E + G S +S+KTD +++G+N G+K KA++LGV ++NE+ Sbjct: 839 VVTGSLIDFSRDSAKEAIISRGGRASGSVSKKTDWVVIGENAGAKAAKAEELGVPMLNED 898 Query: 713 QFLFLLQ 719 QF LL+ Sbjct: 899 QFKILLE 905 >gi|23336066|ref|ZP_00121295.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Bifidobacterium longum DJO10A] gi|189438929|ref|YP_001954010.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A] gi|254781259|sp|B3DPR8|DNLJ_BIFLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189427364|gb|ACD97512.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A] Length = 920 Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 171/504 (33%), Positives = 270/504 (53%), Gaps = 49/504 (9%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 54 VNMMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185 + E KIDG + + Y G RGDG +GED++ +R I +IP L ++P+ + Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFV 230 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGLG Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290 Query: 245 K----------TSEIFAKGQ--YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMK 289 + T ++ A Y++ K G PV+ R +F I + YY E Sbjct: 291 QLTWGPDHPRGTHDVVADQSQAYDLYTKW---GVPVSPHNRAVTSFQEILDMIEYYGEH- 346 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 R + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRT Sbjct: 347 --RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRT 404 Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 G +TPVA L+PV + G+ + TLHN G + V R G I +GD V+V++AG+V Sbjct: 405 GRVTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--ILIGDTVVVRKAGDV 453 Query: 410 IPKVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACS 465 IP++V ++ R + F P FCP C ++ L+P K G RC +C Sbjct: 454 IPELVGPVLERRKGREDQLREFVMPEFCPSCGAK----LSPAKEGD--KDIRCPNVESCP 507 Query: 466 AQQLERLKHFVSRDAFNIEGLGKQ 489 AQ ER+ SR AF+IE LG+Q Sbjct: 508 AQLTERVISLASRKAFDIEHLGEQ 531 Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 19/221 (8%) Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +PAD ++ +T+ T + + I+ G+ + ++D ++K R+ L R + +L IR + Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G AR +A + ++ A N L + VG IA+++V ++ R Sbjct: 765 GPPTARLIASA----------MGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAATREP 814 Query: 623 CAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 L + +G E SS + K +V TG+L+ R A+E + + G Sbjct: 815 GDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKA 874 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S+KTD +++G N GSK KA++LG+ +++E QF LL Sbjct: 875 AGSVSKKTDYVVIGANAGSKAAKAEELGIPMLSETQFAQLL 915 >gi|296454555|ref|YP_003661698.1| DNA ligase [Bifidobacterium longum subsp. longum JDM301] gi|296183986|gb|ADH00868.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum JDM301] Length = 920 Score = 273 bits (699), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 168/501 (33%), Positives = 266/501 (53%), Gaps = 43/501 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 54 VNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 DNPQSPTHRVGGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185 + E KIDG + + Y G RGDG +GED++ +R I +IP L ++P+ + Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFV 230 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGLG Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290 Query: 245 K----------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSI 291 + T ++ A Q + G PV+ R +F I + YY E Sbjct: 291 QLTWGPDHPRGTHDVVAD-QSQAYDLYTRWGVPVSPHNRAVTSFQEILDMIEYYGEH--- 346 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRTG Sbjct: 347 RGDIEHALDGIVVKVDDLGLQRALGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGR 406 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVA L+PV + G+ + TLHN G + V R G I +GD V+V++AG+VIP Sbjct: 407 VTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--ILIGDTVVVRKAGDVIP 455 Query: 412 KVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 ++V ++ R + F P FCP C +++ K G RC +C AQ Sbjct: 456 ELVGPVLERRKGREGQLREFVMPEFCPSCGAKLA---PAKEGD--KDIRCPNVESCPAQL 510 Query: 469 LERLKHFVSRDAFNIEGLGKQ 489 ER+ SR AF+IE LG+Q Sbjct: 511 TERVISLASRKAFDIEHLGEQ 531 Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 19/221 (8%) Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +PAD ++ +T+ T + + I+ G+ + ++D ++K R+ L R + +L IR + Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G AR +A + ++ A N L + VG IA+++V ++ R Sbjct: 765 GPPTARLIASA----------MGSLAAIENATIEDLTAIDGVGPEIAESVVNWFAAAREP 814 Query: 623 CAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 L + +G E SS + K +V TG+L+ R A+E + + G Sbjct: 815 GDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKA 874 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S+KTD +++G N GSK KA++LG+ ++ E QF LL Sbjct: 875 AGSVSKKTDYVVIGANAGSKATKAEELGIPMLGEAQFAQLL 915 >gi|213691626|ref|YP_002322212.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254781260|sp|B7GPV4|DNLJ_BIFLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|213523087|gb|ACJ51834.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457713|dbj|BAJ68334.1| DNA ligase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 921 Score = 273 bits (699), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 169/502 (33%), Positives = 267/502 (53%), Gaps = 45/502 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++ E A + + + + YY P+ D+ YDA R + + AFP L Sbjct: 54 VNTMTAEAAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSL--- 110 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 ++P P +++GG + V H +SL+ +++IE+L+ + + R + + Sbjct: 111 DNPQSPTHRVGGSFSNDFVSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPM 170 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEII 185 + E KIDG + + Y G RGDG +GED++ +R I +IP L ++P+ + Sbjct: 171 SCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFV 230 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF LN+E GR P+ANPRNAA+G LR+ +P TR L+F+ HGLG Sbjct: 231 EIRGEVFMRWDDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLG 290 Query: 245 K----------TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSI 291 + T ++ A Q + G PV+ R +F I + YY E Sbjct: 291 QLTWGADHPRGTHDVVAD-QSQAYDLYTRWGVPVSPHNRAVTSFQEILDMIEYYGEH--- 346 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R + + +DG+V KVD+ LQ+ LG +R+PRW I++K+ ++ +T LL+I +Q+GRTG Sbjct: 347 RGDIEHALDGIVVKVDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGR 406 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVA L+PV + G+ + TLHN G + V R G + +GD V+V++AG+VIP Sbjct: 407 VTPVAVLKPVYVAGSTVARTTLHN-----GFE----VKRKG--VLIGDTVVVRKAGDVIP 455 Query: 412 KVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQ 467 ++V ++ R + F P FCP C ++ L P K G RC +C AQ Sbjct: 456 ELVGPVLERRKGREDQLREFVMPEFCPSCGAK----LAPAKEGD--KDIRCPNVESCPAQ 509 Query: 468 QLERLKHFVSRDAFNIEGLGKQ 489 ER+ SR AF+IE LG+Q Sbjct: 510 LTERVISLASRKAFDIEHLGEQ 531 Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 21/223 (9%) Query: 506 IPADIFTLQRRQQTSTTKIEN---ILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 +PAD ++ +T+ T + + I+ G+ + ++D ++K R+ L R + +L IR + Sbjct: 706 VPADAVIVRVDHKTTRTGVTDVPVIIRPGE-NTRKMFDEMDKARHADLWRVLVALSIRRL 764 Query: 563 GAEIARSLAKYYLSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 G AR +A S + I ++ A + VG IA+++V ++ R Sbjct: 765 GPPTARLIASAMGSLAAIEKATIEDLTAIDG-----------VGPEIAESVVNWFAATRE 813 Query: 622 ICAVEA--LLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 L + +G E SS + K +V TG+L+ R A+E + + G Sbjct: 814 PGDWRGATLRAWQAAGVGVDEAETSSLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGK 873 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +S+KTD +++G N GSK KA++LG+ ++ E QF LL+ Sbjct: 874 AAGSVSKKTDYVVIGANAGSKAIKAEELGIPMLGEIQFAQLLE 916 >gi|297196946|ref|ZP_06914343.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083] gi|297146537|gb|EDY59948.2| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083] Length = 712 Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 202/713 (28%), Positives = 329/713 (46%), Gaps = 68/713 (9%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ + D YD L R A PD PN P K+ G + V H++ Sbjct: 45 AYYEGGTSALDDDAYDRLVRGIAAWETDHPDQVL---PNSPTGKVAG--GAVVGDVPHTV 99 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 LSL+ +++ ED + + R + F++EPK+DG I RY +G+ Sbjct: 100 AMLSLDNVFSPEDFTAWTVSLAR---RIGHEVRRFSVEPKLDGLAIAARYTQGRLARLIT 156 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG +GEDVS I + +P L+ P +EVRGEV ++ F N+ A G +P+ Sbjct: 157 RGDGIAGEDVSHAIGTLEGLPE--KLDQPVTVEVRGEVLMTTAQFEHANEVRTAHGGQPF 214 Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGL--------GKTSEIFAKGQYEMLQKMRCLG 265 AN R A++G LR + T + FF + L T + +++ +G Sbjct: 215 ANARGASAGTLRAKDRA-YTVPMTFFGYSLLSLPDADSALTERLNGLAHSDLMDLTAQMG 273 Query: 266 FPVNNGVRQ----ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 A T ++ E+ ++R+ LP+ IDG+V K D + Q+ G +R+ Sbjct: 274 VNTTATTAAPGIIATTVEEVLDRVREIAALRAELPFGIDGIVIKADLAADQQAAGSGSRA 333 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW I++K + TRLLD++ +GRTGI+ P LEPV I GA IT ATLHN I Sbjct: 334 PRWAIAYKLPAVEKITRLLDVEWNVGRTGIVAPRGVLEPVEIDGATITYATLHNPADIA- 392 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 R +R+GD V+V RAG+VIP++ + + R D QP +FP CP C S + Sbjct: 393 ----------RRGLRLGDHVMVHRAGDVIPRIEAPVAHLRTGDEQPIAFPEVCPRCGSAI 442 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 D + + RC G C + L + RD +IEGLG ++ + A Sbjct: 443 --DTSQER------WRCEQGRNC--HLVASLSYAAGRDQLDIEGLGVTRIVQLVE----A 488 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + AD+FTL R Q + ++ G S NL +I + L R + +LG+R Sbjct: 489 GLVTDLADLFTLTRDQLLALERM------GATSTDNLLTAIAAAKGQPLSRVLCALGVRG 542 Query: 562 VGAEIARSLAKYYLSYQNF----AQEINNIIAHNNDDWLSLIR-----VPLVGDIIAQAI 612 G ++R +A+++ + A + + + S++ PL+ +IA + Sbjct: 543 TGRSMSRRIARHFATMDTIRAADADAMQQVEGIGTEKAPSIVAELAELAPLIDKLIAAGV 602 Query: 613 --VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 E P + + G ++ + TG L+K+ R++ E + Sbjct: 603 NMTEPGVTPPPAAGDTDAAAGGTKAAGGPLAGMTVVVTG---AMTGALEKLSRNQMNELI 659 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 + G S+ +S+KT +++ G+ GSK KA+ LG+++ ++F L+ + + Sbjct: 660 ERAGGRSSSNVSKKTTLVVAGEGAGSKRAKAEDLGIRLATPDEFAALVADFTS 712 >gi|302526819|ref|ZP_07279161.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4] gi|302435714|gb|EFL07530.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4] Length = 663 Score = 273 bits (697), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 215/715 (30%), Positives = 348/715 (48%), Gaps = 89/715 (12%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+ + L +I D YY+ S P + D+EYDA++ + A P+LA DPN PL++ Sbjct: 4 RERIQELADQIVALRDAYYRGS-PAVADAEYDAIEDELRGLIEASPELA--PDPN-PLDQ 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +GG L + HS P LSLEK E + F R + PK+DG Sbjct: 60 VGGPAVLHA-PIRHSRPMLSLEKATKPEQVEAFFDRF---------PGQAVVVMPKLDGL 109 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT-IPRVLSLNIPEIIEVRGEVYISKN 196 + + YE G+ A RGDG +G+DV+ +RA+ +P +S P +EVRGE + ++ Sbjct: 110 SLALVYEDGRLARAVTRGDGTTGDDVTMLVRALTDGVPHQVS--APGRVEVRGEAVMLRS 167 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F A N A KP NPRNAA+G LR +P + R L FF L + Sbjct: 168 TFAAYN---TAHPDKPLINPRNAAAGTLRAKDPAAVAERRLRFFAFDLDTEP---GSAET 221 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 ++ + LGF + R A+ + ++ R+ L YDIDG V ++ + + Sbjct: 222 DLGSGLLALGFTAADMRRCADAASA-QAVITAIEQQRNDLDYDIDGAVLRLADRAAYAAA 280 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G R+ SPR +++KFA ++ +T L D+ +G+TG + PVA LEPV +GG +T ATL N Sbjct: 281 GTRSSSPRGALAYKFAAEEKTTVLSDVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLAN 340 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ-PFSFPSFC 434 ++ I+ R I++GD VLV+RAG+VIP V ++ + A+ PS C Sbjct: 341 QEVIR-----------ARGIKIGDTVLVRRAGDVIPFVAGVLDESKRTGAEREIVPPSTC 389 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C+ + N + +L CT ++C AQ + RL H+ SR A +I+ +G ++ Sbjct: 390 PSCEQPLTEQGNSR--ELF----CT-NVSCPAQTVRRLIHWASRAAADIDAIGGVWIERL 442 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLE 551 + A + P+D + L + E +L F G+VS T + +SI+ R + L Sbjct: 443 AE----AGILEHPSDFYRLTK---------ERLLEFDRIGEVSATRMIESIDASRQVGLR 489 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 R + L I +A L FA + ++ D L+ V +G +A + Sbjct: 490 RALIGLAI-----PMASEGTAARLCRAGFAS-LEAVLDAGVD---GLVEVEDIGPKVAAS 540 Query: 612 IVEFYQNPR--------NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL----- 658 +VE R +++ L +++ P++ + +E K +V TG + Sbjct: 541 LVEHLTRLRPELERLRERGVSLDVLEEDLPPAV-----VAGAPLEGKTVVVTGAISDPRS 595 Query: 659 -QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711 +K+ R Q GA ++ +S TD++I G + G SKL KA++LGV+++++ Sbjct: 596 GEKVPRPTFQRLCETAGATTASSVSASTDLLITGADVGASKLTKAEKLGVEVVDQ 650 >gi|225013055|ref|ZP_03703470.1| DNA ligase, NAD-dependent [Flavobacteria bacterium MS024-2A] gi|225002783|gb|EEG40764.1| DNA ligase, NAD-dependent [Flavobacteria bacterium MS024-2A] Length = 487 Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 168/523 (32%), Positives = 271/523 (51%), Gaps = 41/523 (7%) Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQ 259 +N++ +G Y NPRN ASG L+ + + + R L F++ L + + QY+ L Sbjct: 1 MNEQRAILGEPLYRNPRNTASGSLKLQDSSIVAERPLTCFLYSLAGDN-LPVTSQYDALI 59 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 K R GF V R N+ + + + R +LPY+IDG+V KV+ LQ++LG A Sbjct: 60 KAREWGFKVPESARLVNSIDAVFEFITYWEEQRKSLPYEIDGIVIKVNSLFLQEELGFTA 119 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 ++PRW I++K+ +QASTRL + Q+GRTG +TPVA+LEPV I G + A+LHN D I Sbjct: 120 KAPRWAIAYKYKAEQASTRLNAVQYQVGRTGAITPVAQLEPVVISGTTVKRASLHNADQI 179 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 + L D+R+GD V V++ GE+IPK+ I + R F CP C S Sbjct: 180 EKL-----------DMRIGDTVFVEKGGEIIPKITGIDNHNRGKHEDRVLFIENCPECNS 228 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + R A H C+ L+C QQ+ +++HF+ R A +IEGLG + + +K Sbjct: 229 PLRRVQGE------AQHYCSNELSCPPQQIGKIQHFIGRKAMDIEGLGGETVGLLYKEG- 281 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 +R AD++ L++ Q ++ + SV NL + I K + + +F LGI Sbjct: 282 ---LLRSIADLYQLKKEQVLPIERM------AEKSVANLLEGIEKSKEKPFSKVLFGLGI 332 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 R+VG +A+ LA+ + S A + + + +GD IAQ++++++ + Sbjct: 333 RYVGETVAKQLAREFKSIDRLALATLEELTNTEE----------IGDRIAQSVLDYFAST 382 Query: 620 RNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 +N + AL + E N + KK V +G + R + + +G V+ Sbjct: 383 KNQSQISALKNFGLQMQALESEHNFHDDFVGKKFVVSGVFEAFSREVLKSEIENMGGKVA 442 Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +S KTD +I G+ G SK EKA + GV I++E+ +L L Q+ Sbjct: 443 SSVSAKTDYLISGEGVGPSKKEKADKFGVTILDEKSYLALKQK 485 >gi|24216818|ref|NP_714299.1| NAD dependent DNA ligase [Leptospira interrogans serovar Lai str. 56601] gi|81465271|sp|Q8EYU4|DNLJ_LEPIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|24198185|gb|AAN51317.1| NAD dependent DNA ligase [Leptospira interrogans serovar Lai str. 56601] Length = 681 Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 209/728 (28%), Positives = 343/728 (47%), Gaps = 66/728 (9%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K++ + LS ++A+ ++ L EI +H YY + P I D ++D L RR + Sbjct: 1 MPKKKEDSQKTLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLEE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP +D P +G +++ K H +P LSL +N +L + W Sbjct: 61 EFPQF---KDLASPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDNELLE--------WVN 109 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K D +++E KIDG I + YE G RG G G+DV+ IR I IP L L Sbjct: 110 KTDPEGLYSVEWKIDGASIVLYYENGILKNGVTRGSGGIGDDVTDNIRTIRNIP--LRLP 167 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239 P + +RGEV+++ DF N A+ YANPRN ++G +++ N +D R L F Sbjct: 168 KPITVYLRGEVFMTFKDFEEFN----ALSSGKYANPRNLSAGSIKQKNSSDTAKRPLRIF 223 Query: 240 VH-GLGKTSEIFAKGQYEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTLP 296 + E K E+ K+ L FPV N + I E K + +L Sbjct: 224 TYDATFPNMEKKFKTHQEIFSKLEKLTFPVPPNTAFVSGSK---IAKTIQEFKKQKDSLG 280 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 + DGLV K+++ S + LG + SPRW ++KF ++++DI +GRTG +TP A Sbjct: 281 FPTDGLVIKLNDISKRDALGYTSHSPRWARAYKFDAIMKESKIVDITYAVGRTGKITPRA 340 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 +EP+++ G +T ATLHN+DYI L + +G V V + GE+IP V ++ Sbjct: 341 EIEPISLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVEEV 389 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 + P + F P CP C ++ ++ K C + + + Sbjct: 390 VT----PGKEVFKIPDRCPSCNTQTIK-------KESLVDLFCPNPDCPDRVKNGIIFYC 438 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 R +IEGLG +Q++F + + I+ AD++ L+ +++ K+ GFG+ SV Sbjct: 439 QRKQMDIEGLGDKQIEFLYDHD----YIKSIADLYDLKDQKE----KLMEEEGFGEKSVN 490 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--IAHNNDD 594 + I + + + SLG+ +G ++ L ++ + I+ I IA + Sbjct: 491 IILKGIEQSKQKDFRFLLPSLGLSELGHKVTELLIEHGID------SIDEILSIAKDQKK 544 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKL 652 SL+ +P +G QA E + + R + +E LK+ + V+ + + Sbjct: 545 IESLLEIPGIGPSTIQAFQENFSDKRILKLIER-LKKAGLKMKADPIQVADQQPFAGQSW 603 Query: 653 VFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 TG+ + Q R KA + + G + +S KT ++ G GSKLEKA +LGV + +E Sbjct: 604 CVTGSFENFQPRDKAMDLIVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGVSVYDE 663 Query: 712 EQFLFLLQ 719 +QFL LL+ Sbjct: 664 KQFLDLLK 671 >gi|45659103|ref|YP_003189.1| NAD dependent DNA ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|81406496|sp|Q72MA6|DNLJ_LEPIC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|45602349|gb|AAS71826.1| NAD dependent DNA ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 681 Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 211/730 (28%), Positives = 344/730 (47%), Gaps = 70/730 (9%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K++ + LS ++A+ ++ L EI +H YY + P I D ++D L RR + Sbjct: 1 MPKKKEDSQKTLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLEE 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP +D P +G +++ K H +P LSL +N +L + W Sbjct: 61 EFPQF---KDLASPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDNELLE--------WVN 109 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 K D +++E KIDG I + YE G RG G G+DV+ IR I IP L Sbjct: 110 KTDPEGLYSVEWKIDGASIVLYYENGILKNGVTRGSGGIGDDVTDNIRTIRNIP----LR 165 Query: 181 IPEIIEV--RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLN 237 +PE I V RGEV+++ DF N A+ YANPRN ++G +++ N +D R L Sbjct: 166 LPEPITVYLRGEVFMTFKDFEEFN----ALSSGKYANPRNLSAGSIKQKNSSDTAKRPLR 221 Query: 238 FFVH-GLGKTSEIFAKGQYEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRST 294 F + E K E+ K+ L FPV N + I E K + + Sbjct: 222 IFTYDATFPNMEKKFKTHQEIFSKLEKLTFPVPPNTAFVSGSK---IAKTIQEFKKQKDS 278 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L + DGLV K+++ S + LG + SPRW ++KF ++++DI +GRTG +TP Sbjct: 279 LGFPTDGLVIKLNDISKRDALGYTSHSPRWARAYKFDAIMKESKIVDITYAVGRTGKITP 338 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 A +EP+++ G +T ATLHN+DYI L + +G V V + GE+IP V Sbjct: 339 RAEIEPISLAGTTVTFATLHNQDYIDEL-----------GVGIGAIVRVAKRGEIIPAVE 387 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 +++ P + F P CP C ++ ++ K C + + Sbjct: 388 EVVT----PGKEVFKIPDRCPSCNTQTIK-------KESLVDLFCPNPDCPDRVKNGIIF 436 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 + R +IEGLG +Q++F + + I+ AD++ L+ +++ K+ GFG+ S Sbjct: 437 YCQRKQMDIEGLGDKQIEFLYDHD----YIKSIADLYDLKDQKE----KLMEEEGFGEKS 488 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI--IAHNN 592 V + I + + + SLG+ +G ++ L ++ + I+ I IA + Sbjct: 489 VNIILKGIEQSKQKDFRFLLPSLGLSELGHKVTELLIEHGID------SIDEILSIAKDQ 542 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENK 650 SL+ +P +G QA E + + R + +E LK+ + V+ + + Sbjct: 543 KKIESLLEIPGIGPSTIQAFQENFSDKRILKLIER-LKKAGLKMKADPIQVADQQPFAGQ 601 Query: 651 KLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 TG+ + Q R KA + + G + +S KT ++ G GSKLEKA +LGV + Sbjct: 602 SWCVTGSFENFQPRDKAMDLIVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGVSVY 661 Query: 710 NEEQFLFLLQ 719 +E+QFL LL+ Sbjct: 662 DEKQFLDLLK 671 >gi|326774207|ref|ZP_08233489.1| DNA ligase, NAD-dependent [Actinomyces viscosus C505] gi|326636346|gb|EGE37250.1| DNA ligase, NAD-dependent [Actinomyces viscosus C505] Length = 818 Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 170/494 (34%), Positives = 265/494 (53%), Gaps = 44/494 (8%) Query: 17 ARKELSSLEQEISYHDDCYYQY--SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 AR+ S L ++I D YY ++ + D++YD L R + + A P LAR+ P Sbjct: 36 ARERWSELVRDIEAARDAYYNAIDAESPLSDADYDTLYRELEGLEAAHPLLARA---GSP 92 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG H SL+ ++++++++++ R+ DD + T E KI Sbjct: 93 TRSVGGRAVTDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETGVGDDE-LAMTAEVKI 151 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG + + YE G AA RGDG +GEDV+ +R I ++P VL+ + P ++EVRGEVY Sbjct: 152 DGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGDAHPSLLEVRGEVYF 211 Query: 194 SKNDFLALNDEMIA--VGRKP--------YANPRNAASGILRRLNPT-DITRYLNFFVHG 242 DF A N+E V R+ +ANPRNAA+G LR+ NP +R L HG Sbjct: 212 PTQDFEAFNEERRTRNVQRQADGAPLLQVFANPRNAAAGSLRQKNPAVTASRPLAMIAHG 271 Query: 243 LGKTS----EIFAKGQYEMLQKMRCLGFPVN--NGVRQANTFHGIVSYYNEMKSIRSTLP 296 +G + E Q+E + + G PV+ N V + +Y + R L Sbjct: 272 VGAITPAPGESLPTRQHEWYELLAGWGLPVSPYNAVVRGRVER--EAYIERYAAHRHDLI 329 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 ++IDG+V+K+D+ SLQ++LG +R PRW ++K+ ++ TRLLDI +Q+GRTG +TP Sbjct: 330 HEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGRVTPFG 389 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 +EPV + G+ + ATLHN + +V R G +R+GD V+V++AG+VIP+++ Sbjct: 390 MMEPVLVAGSTVARATLHN---------ATEVARKG--VRIGDMVIVRKAGDVIPEILGP 438 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHF 475 + + R + F P+ CP C + +L P K G + RC +C AQ ER+ H Sbjct: 439 VADLRDGSERDFVMPTHCPSCGT----ELAPAKDGDV--DLRCPNTRSCPAQLTERIAHI 492 Query: 476 VSRDAFNIEGLGKQ 489 SR A ++EGLG + Sbjct: 493 GSRGALDVEGLGDE 506 >gi|229817979|ref|ZP_04448261.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM 20098] gi|229784583|gb|EEP20697.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM 20098] Length = 927 Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 169/501 (33%), Positives = 265/501 (52%), Gaps = 45/501 (8%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + + + A + + L + YY P+ D+ YDA R + AFP L Sbjct: 72 VSGMEADTAARLWAKLAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQRLEAAFPTL--- 128 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 ++P P ++GG + V H +SL+ +++IE+L + + R + + Sbjct: 129 DNPQSPTRRVGGTFSNDFVSVRHPSRMMSLDDVFSIEELHDWYDGVLRGLDWPEGKPLPM 188 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEII 185 + E KIDG + + Y G RGDG +GED++ +R I TIP L + +IP+ + Sbjct: 189 SCEVKIDGLALNLIYRHGVLEQGLTRGDGVTGEDITLNVRTIGTIPANLAGPTEDIPDFV 248 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 E+RGEV++ +DF LNDE GR+P+ANPRNAA+G LR+ +P TR L+F+ HG+G Sbjct: 249 EIRGEVFMRWDDFRRLNDEQEDAGREPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG 308 Query: 245 KTS---------EIFAKGQ-YEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSI 291 + EI + + YE+ K G PV+ R +F + + YY E Sbjct: 309 RLEWGAGHAGHDEINDQSEAYELYTKW---GVPVSPHNRTVASFAEVLDMIDYYGEH--- 362 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R + + +DG+V KVD+ +LQ+ LG +R+PRW I++K+ ++ +T LLDI +Q+GRTG Sbjct: 363 RGDIEHALDGIVVKVDDLALQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGR 422 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVA L+PV++ G+ + TLHN +K R G I +GD V+V++AG+VIP Sbjct: 423 VTPVAMLKPVHVAGSTVARTTLHNPFEVK---------RKG--ILIGDTVVVRKAGDVIP 471 Query: 412 KVVDIIVNE---RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 ++V ++ R + + F P CP C +++ K G RC +C AQ Sbjct: 472 ELVGPVLERRKGRESELREFVMPEHCPSCGAKLA---PAKEGD--KDIRCPNVESCPAQL 526 Query: 469 LERLKHFVSRDAFNIEGLGKQ 489 ER+ R AF+IE LG Q Sbjct: 527 TERVISLGMRKAFDIEHLGDQ 547 Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 20/227 (8%) Query: 500 PAFSIRIPADIFTLQRRQQTS---TTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 P F++ P D ++ +TS T I I+ + + + I+K + L R + + Sbjct: 691 PGFNV--PDDAVVVREETKTSRSGETTITPIIVKPAENTRKMLEEIDKAKQADLWRVLVA 748 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 L IR +G AR +A S ++ I + DD L ++ VG IA+++V ++ Sbjct: 749 LSIRRLGPPTARLIASAMGS-------LDAISKASVDD---LTQIDGVGPEIAESVVHWF 798 Query: 617 QNPRNICAV--EALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQEYVT 671 R + L + +G E SS + K +V TG+L+ R A+E + Sbjct: 799 AAAREPGDWRGQTLTAWRAAGVGVGEAAKSSLPQTLAGKTVVVTGSLEGFSRDSAKEAIM 858 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G + +S+KTD +++G N GSK KA++LG+ +++E QF LL Sbjct: 859 ERGGKAAGSVSKKTDYVVIGANAGSKAAKAEELGIPMLDEAQFELLL 905 >gi|219127319|ref|XP_002183885.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404608|gb|EEC44554.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 864 Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 208/696 (29%), Positives = 339/696 (48%), Gaps = 95/696 (13%) Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSIFFTLEPKIDGTMITIRYEKG 146 K H P LSL+ + E+L ++ RI + D +S+ EPK+DG ++ RYE+ Sbjct: 181 KRPHVRPMLSLDNVHREEELLAWLERIRKKLTVDDGPSSLTILTEPKLDGLSLSCRYEQR 240 Query: 147 K-------FVYAALRGDGHSGEDVSACIRAIPTIPRVL----------SLNIPEIIEVRG 189 + FV+A+ RGDG G+DV+ ++ +P L S P+++E+RG Sbjct: 241 QSNTTLYTFVWASTRGDGKQGQDVTHAVQQGNLVPLTLDWASLVADPESYTHPKVLEIRG 300 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL-RRLNPTD------ITRYLNFFVHG 242 E+ + F +L E +A +AN RNAASGIL R+ + TD + L F+ + Sbjct: 301 EIVLPTTVFQSLEGEGLA-----FANARNAASGILLRKESITDPVASQALREKLCFYAYD 355 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPV------------NNGVRQANTFHGIVSYYNEM-- 288 + G ++ + + LGF V N N ++ Y++ M Sbjct: 356 VAGDDGFTVSG-VQLRRVLPTLGFRVPEPVAVTRLRLNNTTAWNVNDIQALLKYHHSMQH 414 Query: 289 -----KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343 K+ ++ YD+DG V+KV E L+ LG+ R+PRW I+HKFA A T LLDI Sbjct: 415 HRQGKKTSQTYGDYDMDGAVHKVSESDLRIILGQSNRAPRWAIAHKFAPLAAVTTLLDIT 474 Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403 +Q+GRTG LTPVA L+PV + G ++ ATLHN +++ +V+ I VLV Sbjct: 475 VQVGRTGALTPVAILQPVELAGVVVRRATLHNFAHMQ------QVLGSTTTIAKESSVLV 528 Query: 404 KRAGEVIPKVVDIIVNERHPDAQPF-----SFPSFCPICQSRVVRD-LNPKTGKLVAAH- 456 +RAG+VIP+VV I F +FP CP C S VV D +N K A Sbjct: 529 RRAGDVIPQVVQRIAGTDAGSNNGFDTISVAFPETCPACGSPVVTDEVNKTASKETAGQV 588 Query: 457 -RCTG-GLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514 RC G C+ + + + H VSRDA ++ GL + ++ + A I P+DIF L Sbjct: 589 LRCGGPQWNCTPRAVGSIAHAVSRDALDVTGLSEARIMQLIE----AGFISRPSDIFALA 644 Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINK--RRNISLERFIFSLGIRHVGAEIARSLAK 572 + T K+ + G+G S NL N+ + ISL RF++SLGIR G + +A Sbjct: 645 -KSPTQLEKLAEMDGWGPKSAQNLAAVANRIAKNGISLSRFVYSLGIRFSGVHSSALIAA 703 Query: 573 YYLSYQNFAQEINNIIA----------HNNDDWLSLIRV-------PLVGDIIAQAIVEF 615 Y S ++F +++ N++ S R+ +G ++ ++ F Sbjct: 704 AYGSVEDFLKDVEAASTLPIKQVQDQESNDEQVQSFARLREETDITKGIGPVLLNSLDTF 763 Query: 616 YQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 Q+ + A E+L + ++ + +++ +VFTG++ ++ R +A+++ Sbjct: 764 AQDQELVEAAESLASSILVLADDSAMVVSTLATTGPLQDMAVVFTGSISEMSRSEAKKWA 823 Query: 671 TQLGA-VVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 +GA +S+ T +++ G+ G KLE+A++LG Sbjct: 824 KVMGAKSTPGSISKLTGLVVAGEKGGKKLEQAEKLG 859 >gi|325922521|ref|ZP_08184282.1| NAD-dependent DNA ligase [Xanthomonas gardneri ATCC 19865] gi|325546986|gb|EGD18079.1| NAD-dependent DNA ligase [Xanthomonas gardneri ATCC 19865] Length = 590 Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 188/606 (31%), Positives = 292/606 (48%), Gaps = 159/606 (26%) Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ML ++R GFPV+ V G+++YY + + R LP+DIDG+VYK+D+ + Q+++G Sbjct: 1 MLAQLREWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLPFDIDGVVYKLDDLAGQREMG 60 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW I+HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN Sbjct: 61 FVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNA 120 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I LD +RVGD V+V+RAG+VIP+V ++ ++R P QP+ P+ CP+ Sbjct: 121 DQIARLD-----------VRVGDTVIVRRAGDVIPEVAGVVADQRPPGTQPWQMPTQCPV 169 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL----- 491 C S +VR+ A RC+G L C AQ+ E +HFVSR A +++GLG++ + Sbjct: 170 CGSEIVREEGE------AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVD 223 Query: 492 --------DFFFKSEDPAFSIRI-----PADIFTLQRRQQTST---TKIEN--------I 527 D + + D +R+ F + R+ +T ++EN + Sbjct: 224 SGVVQGVADLYLLTVDQLLQLRLISTAESPHAFLREAREHLATGAYAQLENTVVSIGVDL 283 Query: 528 LGFGDVSVT--------------------------NLYDSINKRRNISLERFIFSLGIRH 561 G +V T NL ++I K R+ +LERF+F+LGI H Sbjct: 284 AGEREVPQTWQADLLRAGLPAFDWNRKKIATKWAENLIEAIEKSRDTTLERFLFALGIEH 343 Query: 562 V--------------------------------GAEIARSLAKYYLSYQNFAQEINNII- 588 V G E+ARSL ++L Q I++++ Sbjct: 344 VGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLG-HFLDQPGNQQAIDDLLQ 402 Query: 589 -------AHNND----DWLSLIRV------PLVGDIIAQ---AIVEFYQNPRNICAVEAL 628 AH D LS V P V + AQ A V+ + R+ A +AL Sbjct: 403 RGVRIGDAHPPSPKLRDALSFASVLEDMDIPKVTPVRAQQLAAAVDSFDALRSAGA-DAL 461 Query: 629 LKEVSPS---------IGRHEKNV-----------------------SSEIENKKLVFTG 656 L+ P+ + R E + ++ + +V TG Sbjct: 462 LQAGVPAPVVASVQQWLERPENAALASDAQQAMETVLSRLPEADALQTGPLDGQTVVITG 521 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL + R A++ + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + L Sbjct: 522 TLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLA 581 Query: 717 LLQQYN 722 L ++ Sbjct: 582 FLGEHG 587 >gi|227494609|ref|ZP_03924925.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436] gi|226832343|gb|EEH64726.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436] Length = 806 Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 162/486 (33%), Positives = 249/486 (51%), Gaps = 27/486 (5%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ +A + L EI+ YY P D+EYD L + +P L Sbjct: 24 PVDTPVPAEATAKWRDLVTEINQMRFDYYNLDAPTASDAEYDVLFEELKDLEAKWPMLVT 83 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ P +GG + V H IP LSL+ ++++E +++ R N + Sbjct: 84 ---PDSPTQTVGGSAVNTFAPVAHRIPMLSLDDVFSVEATHQWLDRCLTGLGM---NQVE 137 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 E K+DG ++I YE G AA RGDG GEDV+A + I +PR L+ + P +EV Sbjct: 138 ILAEVKVDGLAVSILYENGLLTRAATRGDGRVGEDVTANVLTISNVPRQLTGDFPASVEV 197 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG-- 244 RGE+Y DFL N++ G K + N RNAA+G LR+ +P + R L HG+G Sbjct: 198 RGEIYFPIADFLDFNEQRALRGEKTFVNARNAAAGSLRQKDPAETAKRPLAMVCHGIGIY 257 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + + Q+ ++++ G PV+ R +T I R+ L ++IDG+V+ Sbjct: 258 EGGQSQPDSQHAWYEQLKAWGLPVSEYTRLISTHAEIDEVIEYFGKHRADLSHEIDGMVF 317 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD Q LG +R+PRW ++KF + TRLLDI Q+GRTG +TP +E V + Sbjct: 318 KVDSRQYQAALGTTSRAPRWAAAYKFPPTEVHTRLLDIRTQVGRTGRVTPYGVMEKVLVA 377 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ +++ATLHN+D +K R G + +GD V++++AG+VIP+++ + + R Sbjct: 378 GSHVSSATLHNQDEVK---------RKG--VLIGDMVILRKAGDVIPEILGPVESLRDGS 426 Query: 425 AQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + F PS CP C + L P K G + RC +C AQ +R+ R AF+I Sbjct: 427 ERAFVMPSHCPSCGA----PLAPAKEGDV--DLRCPNQASCPAQITQRISFMGGRSAFDI 480 Query: 484 EGLGKQ 489 EGLG + Sbjct: 481 EGLGDE 486 Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 18/190 (9%) Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 +T + D + K + L R + +L IRHVG +++LA ++ S Q +A Sbjct: 624 LTKMLDQLEKAKQQPLWRVLNALSIRHVGPTASQALADHFRSLDALQQ---ASVAE---- 676 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK---- 650 L V VG IIA+A+V ++Q + + ++ + S R E + E+ Sbjct: 677 ---LAAVEGVGQIIAEAVVAWFQ----VDWHKHIVNTWAASGVRMEDEATEELPQTLAGL 729 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V +GT+ R A+ + GA S+ +S+KT +++ G GSK KA+ LGV +++ Sbjct: 730 TIVVSGTMPGYDRESAKAAIIARGAKASSSVSKKTSLVVAGPGAGSKATKAETLGVPLVD 789 Query: 711 EEQFLFLLQQ 720 E +F LL + Sbjct: 790 ETKFQLLLDE 799 >gi|329946006|ref|ZP_08293693.1| DNA ligase [Actinomyces sp. oral taxon 170 str. F0386] gi|328528454|gb|EGF55432.1| DNA ligase [Actinomyces sp. oral taxon 170 str. F0386] Length = 811 Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 169/495 (34%), Positives = 265/495 (53%), Gaps = 46/495 (9%) Query: 17 ARKELSSLEQEISYHDDCYYQY--SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 AR+ L ++I D YY ++ + D++YD L R + + A P LAR+ P Sbjct: 27 ARERWGELVRDIEAARDAYYNAVDAESSLSDADYDVLYRELEDLEAAHPLLARA---GSP 83 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG H SL+ ++++++++++ R+ DD+ + T E KI Sbjct: 84 TRSVGGRAITDFTPAPHHERMYSLQDVFSLDEVQEWAERMMAETGVADDD-LAMTAEVKI 142 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG + + YE G AA RGDG +GEDV+ +R I ++P VLS + P ++EVRGEVY Sbjct: 143 DGLAVALTYENGILTRAATRGDGTTGEDVTGNVRTIASVPLVLSGDAHPSLLEVRGEVYF 202 Query: 194 SKNDFLALNDEMIA--VGRKP--------YANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +F A N++ V R+ +ANPRNAA+G LR+ NP +R L HG Sbjct: 203 PTQEFEAFNEDRRTRNVQRQADGAPLLQVFANPRNAAAGSLRQKNPAITASRPLAMIAHG 262 Query: 243 LGKTS----EIFAKGQYEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSIRSTL 295 +G + E Q+E + + G PV N VR + Y + R L Sbjct: 263 VGAITPAPGERLPARQHEWYELLAGWGLPVSPYNTVVRGRAEREAYIERY---ATHRHDL 319 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 ++IDG+V+K+D+ SLQ++LG +R PRW ++K+ ++ TRLLDI +Q+GRTG +TP Sbjct: 320 IHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGRVTPF 379 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 +EPV + G+ + ATLHN + +V R G +R+GD V+V++AG+VIP+++ Sbjct: 380 GMMEPVLVAGSTVARATLHN---------ATEVARKG--VRIGDMVIVRKAGDVIPEILG 428 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKH 474 + + R + F+ P+ CP C + +L P K G + RC +C AQ ER+ H Sbjct: 429 PVADLRDGTERDFAMPTHCPSCGT----ELAPAKDGDV--DLRCPNTRSCPAQLTERIAH 482 Query: 475 FVSRDAFNIEGLGKQ 489 SR A ++EGLG + Sbjct: 483 IGSRGALDVEGLGDE 497 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 21/189 (11%) Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 + + R L R + +L +RHVG AR+LA + S + D Sbjct: 628 MLSQLRDARTRPLWRILVALSVRHVGPTAARALAARFRSLETLCHA----------DVAE 677 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK------ 651 L V VG IA++ V + R++ +L + R + S + E Sbjct: 678 LAEVDGVGSTIAESWVRW----RDVDWHREILNRWEAAGVRTREEASDQQEEPARTLDGL 733 Query: 652 -LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+L+ R A+E + G S +SRKT +IVGD GSK KA++LG+ I++ Sbjct: 734 TVVVTGSLEGFTRDSAKEAIVSRGGKASGSVSRKTSFVIVGDKAGSKEAKARELGLTILD 793 Query: 711 EEQFLFLLQ 719 EE F+ LL+ Sbjct: 794 EEGFVSLLE 802 >gi|257066474|ref|YP_003152730.1| NAD-dependent DNA ligase LigA [Anaerococcus prevotii DSM 20548] gi|256798354|gb|ACV29009.1| DNA ligase, NAD-dependent [Anaerococcus prevotii DSM 20548] Length = 666 Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 193/711 (27%), Positives = 354/711 (49%), Gaps = 79/711 (11%) Query: 26 QEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIG 79 + ++YH YY +P++ D EYD + + +L + E+ G P +G Sbjct: 15 ENLNYH---YYTLDEPLVSDGEYDQI----------YDELRKLEEETGYVRDDSPTQVVG 61 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF---------FTL 130 GE+ K H LS K E+L +I R R +DD +I + + Sbjct: 62 GEILDKFEKHFHITKLLSQNKAQTHEELEAWIDRCNRL---RDDYNINHDDKLAELEYIM 118 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 E K DG + + Y G V AA RG+G GE++S +R I +IP + ++E++GE Sbjct: 119 EYKFDGLTVNLTYNNGNLVNAATRGNGIIGEEISPQVRTIRSIPN--RIKEKSLLEIQGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249 + ++ N+E N RNAA+G LR LN + R L + + + + Sbjct: 177 ALMPLSELTRYNEE----NELQLKNARNAAAGALRNLNTKETAKRKLTAYFYSIPTNNLD 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 FA + +ML+ ++ G ++ ++ + +++ + ++ R + DG+V K+++ Sbjct: 233 FATEE-DMLEFLKEQGLLIHPYHKKVHNLEEMLAELDFIEEERKNIDILTDGVVIKINDK 291 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 Q+ LG + PRW I++KF ++ +T L ++ +GR+G +TP A L+PV GA ++ Sbjct: 292 RTQEVLGSTNKFPRWSIAYKFEAEEYTTTLREVVWNVGRSGKVTPSAILDPVEFSGATVS 351 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATL+N D ++R + +R+G +V ++R+ +VIP+++ +V+E + Sbjct: 352 RATLNNYD---------DIIR--KKVRIGSKVFIRRSNDVIPEILG-VVDENQEGTKEIE 399 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 PS CP C S +++ G + C ++C Q L R++HF SR+A +IEGL ++ Sbjct: 400 KPSKCPYCGSELIQ------GNVHII--CPNSISCKPQLLARMEHFTSRNAMDIEGLSEK 451 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + + D I DI+ L S + N+ FGD NL ++I + + Sbjct: 452 TIAQLMEELD----INEVDDIYDL------SYDDLINLDRFGDKKTKNLLNAIEASKKVD 501 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L+ FI+++GI +VG +R LA + S+ + + H + + LS + +G+I A Sbjct: 502 LDNFIYAIGIPNVGERTSRDLANKFKSF--------DALRHASLEELS--DIDDIGEITA 551 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 Q I+E++++P +++ LLK+ N S + + V TGT+ +R ++ Sbjct: 552 QNIIEYFRDPNISKSIDNLLKKGIEISEVKADNNSDSLNDMTFVITGTIDNYKRDDIKKL 611 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + GA V+ +S+ TD+++ G+ GSK +KA+ LG++I ++ L++ Sbjct: 612 LESNGAKVTGSVSKNTDVVLAGEKSGSKKDKAKNLGIEIYENDKLYDFLKE 662 >gi|320533083|ref|ZP_08033816.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 171 str. F0337] gi|320134698|gb|EFW26913.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 171 str. F0337] Length = 825 Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 169/499 (33%), Positives = 264/499 (52%), Gaps = 54/499 (10%) Query: 17 ARKELSSLEQEISYHDDCYYQY--SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 AR+ S L ++I D YY ++ + D++YDAL R + + A P LAR+ P Sbjct: 36 ARERWSELVRDIEAARDAYYNAIDAESPLSDADYDALYRELEGLEAAHPLLARA---GSP 92 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG H SL+ ++++++++++ R+ DD + T E KI Sbjct: 93 TRSVGGRAITDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETGVGDDE-LAMTAEVKI 151 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG + + YE G AA RGDG +GEDV+ +R I ++P VL+ + P ++EVRGEVY Sbjct: 152 DGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGDAHPSLLEVRGEVYF 211 Query: 194 SKNDFLALNDE--------------MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 +F + N+E ++ V +ANPRNAA+G LR+ NP +R L Sbjct: 212 PTQEFESFNEERRTRNLQRQADGTPLLQV----FANPRNAAAGSLRQKNPAVTASRPLAM 267 Query: 239 FVHGLGKTS----EIFAKGQYEMLQKMRCLGFPV---NNGVRQANTFHGIVSYYNEMKSI 291 HG+G + E Q+E + + G PV N VR + Y + Sbjct: 268 IAHGVGAITPAPGEKLPTRQHEWYELLAGWGLPVSPYNTVVRGRAEREAYIERY---ATH 324 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R L ++IDG+V+K+D+ SLQ++LG +R PRW ++K+ ++ TRLLDI +Q+GRTG Sbjct: 325 RHDLIHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGR 384 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TP +EPV + G+ + ATLHN + +V R G +R+GD V+V++AG+VIP Sbjct: 385 VTPFGMMEPVLVAGSTVARATLHN---------ATEVARKG--VRIGDMVIVRKAGDVIP 433 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLE 470 +++ + R + F P+ CP C + +L P K G + RC +C AQ E Sbjct: 434 EILGPVAELRDGSERDFVMPTHCPSCGT----ELAPAKDGDV--DLRCPNTRSCPAQLTE 487 Query: 471 RLKHFVSRDAFNIEGLGKQ 489 R+ H SR A ++EGLG + Sbjct: 488 RIAHIGSRGALDVEGLGDE 506 Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 13/189 (6%) Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 + T + + + R L R + +L +RHVG AR+LA + S + Q Sbjct: 633 NATAMISQLRQARTRPLWRILVALSVRHVGPTAARALAARFRSLEALCQA---------- 682 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNP--RNICA-VEALLKEVSPSIGRHEKNVSSEIENK 650 D L V VG IA++ V + + R I + EA ++ + +E Sbjct: 683 DVAELAEVDGVGPTIAESWVRWREVDWHREILSRWEAAGVRTREETSDQQEEPARTLEGL 742 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+L++ R A+E + G S +S+KT ++VGD GSK KA+ LG+ I++ Sbjct: 743 TIVVTGSLERFTRDSAKEAIVSRGGKASGSVSKKTSFVVVGDKAGSKESKARDLGLTILD 802 Query: 711 EEQFLFLLQ 719 E+ F+ LL+ Sbjct: 803 EDGFVALLE 811 >gi|325068288|ref|ZP_08126961.1| DNA ligase (NAD(+)) [Actinomyces oris K20] Length = 818 Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 168/495 (33%), Positives = 265/495 (53%), Gaps = 46/495 (9%) Query: 17 ARKELSSLEQEISYHDDCYYQY--SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 AR+ S L ++I D YY ++ + D++YD L R + + A+P LAR+ P Sbjct: 36 ARERWSELVRDIEAARDAYYNAIDAESPLSDADYDLLYRELEGLEAAYPLLARA---GSP 92 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG H SL+ ++++++++++ R+ DD + T E KI Sbjct: 93 TRSVGGRAVTDFAPAPHHERMYSLQDVFSLDEVQEWAERMVAETGVGDDE-LAMTAEVKI 151 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI-PEIIEVRGEVYI 193 DG + + YE G AA RGDG +GEDV+ +R I ++P VL+ + P ++EVRGEVY Sbjct: 152 DGLAVALTYEDGILTRAATRGDGTTGEDVTGNVRTIASVPLVLAGDAHPSLLEVRGEVYF 211 Query: 194 SKNDFLALNDE--MIAVGRKP--------YANPRNAASGILRRLNPT-DITRYLNFFVHG 242 +F A N+E + + R+ +ANPRNAA+G LR+ NP +R L HG Sbjct: 212 PTQEFEAFNEERRTLNLQRQADGAPLLQVFANPRNAAAGSLRQKNPAVTASRPLAMIAHG 271 Query: 243 LGKTS----EIFAKGQYEMLQKMRCLGF---PVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 +G + E Q+E + + G P N VR + Y + R L Sbjct: 272 VGAITPAPGERLPTRQHEWYELLAGWGLAVSPYNAVVRGRAEREAYIERY---ATHRHDL 328 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 ++IDG+V+K+D+ SLQ++LG +R PRW ++K+ ++ TRLLDI +Q+GRTG +TP Sbjct: 329 IHEIDGIVFKLDDHSLQRRLGHTSRVPRWATAYKYPPEEVRTRLLDIAVQVGRTGRVTPF 388 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 +EPV + G+ + ATLHN + +V R G +R+GD V+V++AG+VIP+++ Sbjct: 389 GMMEPVLVAGSTVARATLHN---------ATEVARKG--VRIGDMVIVRKAGDVIPEILG 437 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKH 474 + + R + F P+ CP C + +L P K G + RC +C AQ ER+ H Sbjct: 438 PVADLRDGSERDFVMPTHCPSCGT----ELAPAKAGDV--DLRCPNTRSCPAQLTERIAH 491 Query: 475 FVSRDAFNIEGLGKQ 489 SR A ++EGLG + Sbjct: 492 IGSRGALDVEGLGDE 506 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 13/189 (6%) Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 + T + + + R+ L R + +L +RHVG AR+LA + S + Q Sbjct: 633 NATAMLSQLRQARSRPLWRILVALSVRHVGPTAARALAARFRSLEALCQA---------- 682 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNP--RNICA-VEALLKEVSPSIGRHEKNVSSEIENK 650 D L V VG IA++ V + + R I + EA ++ + +E Sbjct: 683 DVAELAEVDGVGPTIAESWVRWREVDWHREILSRWEAAGVRTWEEDSEEQEEPARTLEGL 742 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+L+ R A+E + G S +S+KT ++VGD GSK KA++LG+ I++ Sbjct: 743 TVVVTGSLEGFTRDSAKEAIVSRGGKASGSVSKKTSFVVVGDKAGSKETKARELGLTILD 802 Query: 711 EEQFLFLLQ 719 EE F+ LL+ Sbjct: 803 EEGFVALLE 811 >gi|311900456|dbj|BAJ32864.1| putative DNA ligase [Kitasatospora setae KM-6054] Length = 718 Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 209/730 (28%), Positives = 341/730 (46%), Gaps = 93/730 (12%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY + D EYDAL R A A P+ ++ P G K+ G + V HS+P Sbjct: 34 YYGDGTTTLGDDEYDALVRAIAAYEEAHPEELLADSPTG---KVAG--GAAEGDVPHSVP 88 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ +++ E+L + + R + + +EPK+DG I RYE G R Sbjct: 89 MLSLDNVFSGEELADWAASLERRLGRAPAG---WCVEPKLDGLAIAARYEGGALRRVLTR 145 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 G+G +GED++ + +P VL+ P +E+RGEV ++ F N+ A G P+A Sbjct: 146 GNGLAGEDITHTAGDVLGLPAVLAE--PVDVELRGEVLLTHAQFERANEIRTAHGAVPFA 203 Query: 215 NPRNAASGILR-RLNPTDITRYLNFFVH---GL--------GKTSEIFAKGQY------- 255 N RN A+G LR + P I L FF + GL G+T + GQ Sbjct: 204 NARNGAAGTLRAKDRPYRIE--LTFFAYDAVGLDENPGEKPGETPD-ETPGQAPSRALDH 260 Query: 256 -EMLQKMRCLGFPVNNGVR----QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +L+++ LG + + + ++ ++R LP+ IDG+V K D + Sbjct: 261 SALLERLAALGANTAASTAAAPLRCESIEEVQRRIEQITALRPQLPFGIDGVVVKADAAA 320 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++ G +R+PRW ++ K A + TRLL+++ +GRTGI+ P A LEPV I G +T Sbjct: 321 DQERAGSGSRAPRWAVARKLAAEHKVTRLLEVEWAVGRTGIIAPRAVLEPVVIDGVTVTY 380 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN I+ R + +GDRV V RAG+VIP+V +V ER + +P F Sbjct: 381 ATLHNPADIE-----------RRGLMLGDRVFVYRAGDVIPRVEAPLVEERTGEERPIVF 429 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C + D + + RC G C Q + + + RD +IEGLG + Sbjct: 430 PAACPRCGEAI--DSSEQR------WRCVRGRNC--QAVASIIYAAGRDQLDIEGLGSTR 479 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + A +R AD+FTL R Q ++ G+ S NL +I R L Sbjct: 480 AVQLVE----AGLVRDLADVFTLTREQLLGLERM------GETSTDNLLAAIATARTRPL 529 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSY--------------QNFAQEINNIIAHNNDDWL 596 R + +LG+R G ++R +A ++ S + E ++ + Sbjct: 530 GRVLCALGVRGTGRSMSRRIAAHFGSMAAIRAADAETLAAVEGIGPEKARLVVSELAELT 589 Query: 597 SLIRVPLVGDIIAQ-AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 +L+ D +A+ + P+ A + +E + + + + + +V T Sbjct: 590 TLL------DRLAELGVGTQVTAPQRPTAPKPAAEETGEAAEDADAPAAGPLSGEAVVVT 643 Query: 656 GT----LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 G+ L + R++ E V + G S+ +S++T +++ G+ GSK KA++LG++I+ Sbjct: 644 GSMTGALAALTRNEMNELVERAGGKASSAVSKRTTLLVAGEKAGSKRAKAEELGIRILTP 703 Query: 712 EQFLFLLQQY 721 E F LL + Sbjct: 704 EDFATLLADH 713 >gi|322379711|ref|ZP_08054024.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS5] gi|321147860|gb|EFX42447.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS5] Length = 762 Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 223/778 (28%), Positives = 361/778 (46%), Gaps = 130/778 (16%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 + +YH YY + P+I D+ YD L R+ +P ++ P P ++GG + +L Sbjct: 17 QYAYH---YYVLASPLISDAIYDQLYRQVLDYETKYP---QNILPYSPTQRVGGVVLETL 70 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIY----------RFWQKKDDNSIF-FTLEPKID 135 K TH + SLE ++N+E+L+ +I RI R Q S FT PK+D Sbjct: 71 PKHTHKVRMWSLENVFNLEELQVWINRIVESEHALKTKGRISQTYPSASFTRFTCSPKLD 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + YE G+ A++RG+G GE V+ + I +IP ++ P IE+RGEV + + Sbjct: 131 GASLNLYYENGQLQSASMRGNGLEGELVTHNAKTIHSIPLIIPYTKP--IEIRGEVVLQR 188 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +AN RNA G LR+L+ R L F+ GLG E + + Sbjct: 189 EDFKALNAERLKQNLPLFANARNATVGSLRQLDSKIAAQRKLTFYPWGLGLVEEKYTSLK 248 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 M Q ++ GF ++ + I + + RS + +D DG+V +D+ LQ Sbjct: 249 QSM-QMVKDWGF-LSLEFVLCESLEAIEETFKLFHTRRSEVTFDADGMVVMLDDLYLQSI 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SPR+ ++KF + T+LLD+ Q+GR+G +TPVA LEP+ + GA I+ ATL Sbjct: 307 LGFTIKSPRFGFAYKFPATEKHTKLLDVLNQVGRSGAITPVALLEPIKLEGACISKATLD 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS-- 432 N I+ + + + D V++ R+G+VIPK++ + + R+ +P + P+ Sbjct: 367 NYTQIQQ-----------QGLMINDTVVIVRSGDVIPKIIKPLKHLRNGTQKPITPPTHC 415 Query: 433 -----------------------------FCPICQ--------SRVVRDLNPKTGKLVA- 454 FCP CQ V + L K K Sbjct: 416 PACQSVLQKQPLNVCPECNLPLLLKNKPNFCPKCQILFKKYTHCPVCQTLLGKQHKKCPQ 475 Query: 455 -----------------------AHRCTGGLA------------CSAQQLERLKHFVSRD 479 +RC L+ C A+ E + +F S+ Sbjct: 476 CQSDVTFPKHCLQCGGDLELKEYCYRCDLDLSNKDRYLFCPNKDCIARVKESIVYFASKH 535 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 I+GLG + + + A I+ D+++L+ + G+ NL Sbjct: 536 GLEIKGLGDKVVAQLLQ----AGLIKGVIDLYSLEEKALLELE------GWQQKKAQNLL 585 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY--LSYQNFAQEINNIIAHNNDDWLS 597 +I K + L RFI +LGI H+G ++ LA+++ + QEI ++ Sbjct: 586 QAITKSKQAPLWRFISALGIEHIGKGASKILAQHFGLEVFDKTYQEIASLEGFGAKGLKE 645 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 + IA + V F + + + ++ LL V+P I +K S ++KK+V TG+ Sbjct: 646 EEKK------IAASFVRFVKENKGL--IKQLLTLVNP-IATEKKITPSFFKDKKIVITGS 696 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 L+K R + + LGA V +S KTD++I G+NPGSKLEKA++LG+++M E FL Sbjct: 697 LEK-PRTEISALLESLGAHVQTGVSSKTDLLIYGENPGSKLEKAKKLGIEVMEEVTFL 753 >gi|28572508|ref|NP_789288.1| DNA ligase [Tropheryma whipplei TW08/27] gi|81629879|sp|Q83HX4|DNLJ_TROW8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|28410640|emb|CAD67026.1| DNA ligase [Tropheryma whipplei TW08/27] Length = 628 Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 190/626 (30%), Positives = 315/626 (50%), Gaps = 76/626 (12%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK-VTHSI 93 YYQ + ++ D EYDAL+ HA D N P +G L+LF+ V H Sbjct: 26 YYQENTSLMSDVEYDALEHELKDAEHA----KGFSDRNSPSLTVGIAAQLNLFEPVKHIE 81 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL+ +++++ L + + + + D + F E KIDG +++RY G + AA Sbjct: 82 PMLSLDNVFSLDQLHSWYEKTKKICPEGDQCT--FVCELKIDGVGVSLRYANGYLISAAT 139 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + +P+IP ++L P I E+RGE +I +++F +N ++ K + Sbjct: 140 RGDGAIGEDITQNMLYVPSIPPRIAL--PGIFEIRGEAFIKRDEFDRIN-QLSLERSKQF 196 Query: 214 ANPRNAASGILRRLNPTDITRYL---NFFVHGLGKT-----------SEIFAKG------ 253 ANPRN SG +R P RYL +F+ HG + S+I A G Sbjct: 197 ANPRNFVSGCIRTKTPN--MRYLESISFYAHGFTQVYGYTSGGMNLHSDITASGGVKTEI 254 Query: 254 ---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + ++ PVN+ R F I SY ++ R +PY IDG+V K+D Sbjct: 255 EHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRLNRQCVPYAIDGIVVKIDSLQ 314 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q LG ++PRW +++KF + TRLLDI++ +GRTG +TP A L+P+ + G+ ++ Sbjct: 315 KQALLGSTTKAPRWAVAYKFPSESTVTRLLDIEVSVGRTGRVTPYAVLQPIQLDGSEVSR 374 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+ I G +D+ +GD V +++AG+++P+V+ + +R F Sbjct: 375 ATLHNQKVI-----------GDKDLLIGDYVRIRKAGDIVPEVLCALPEKRDGSEVLFKM 423 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ- 489 PS CP C + + + K G + RC +C Q RL++ SR +I L ++ Sbjct: 424 PSLCPSCGAEL---MPSKLGDI--DLRCPNMQSCLVQLAGRLEYIGSRGVLDIAYLAEEN 478 Query: 490 -----QLDFFFKS-EDPAFSIRIPADIFTLQRRQQTST-----TKIENILGFGDV--SVT 536 L F KS E F I I D+ L+ + + K ++ GF + S Sbjct: 479 AYALSHLRKFGKSAEVQLFKITID-DLVALEFMYKGNMRSPFRKKGDSFPGFEEPTKSAQ 537 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 ++ DSI + + L +F+ +L IRH+G A++LA ++ S I +II D+ Sbjct: 538 DMVDSIERAKRSPLWKFLLALNIRHIGPASAKALADHFGS-------IESIINAKIDE-- 588 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNI 622 L++V +G+ IA ++ +++++P + Sbjct: 589 -LLKVRSLGETIAISVHDWFRDPWRV 613 >gi|166216282|sp|Q83G99|DNLJ_TROWT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 628 Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 190/626 (30%), Positives = 315/626 (50%), Gaps = 76/626 (12%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK-VTHSI 93 YYQ + ++ D EYDAL+ HA D N P +G L+LF+ V H Sbjct: 26 YYQENTSLMSDVEYDALEHELKDAEHA----KGFSDRNSPSLTVGIAAQLNLFEPVKHIE 81 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL+ +++++ L + + + + D + F E KIDG +++RY G + AA Sbjct: 82 PMLSLDNVFSLDQLHSWYEKTKKICPEGDQCT--FVCELKIDGVGVSLRYANGYLISAAT 139 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + +P+IP ++L P I E+RGE +I +++F +N ++ K + Sbjct: 140 RGDGAIGEDITQNMLYVPSIPPRIAL--PGIFEIRGEAFIKRDEFDRIN-QLSLERSKQF 196 Query: 214 ANPRNAASGILRRLNPTDITRYL---NFFVHGLGKT-----------SEIFAKG------ 253 ANPRN SG +R P RYL +F+ HG + S+I A G Sbjct: 197 ANPRNFVSGCIRTKTPN--MRYLESISFYAHGFTQVYGYTSGGMNLHSDITASGGVKTEI 254 Query: 254 ---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + ++ PVN+ R F I SY ++ R +PY IDG+V K+D Sbjct: 255 EHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRLNRQCVPYAIDGIVVKIDSLQ 314 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q LG ++PRW +++KF + TRLLDI++ +GRTG +TP A L+P+ + G+ ++ Sbjct: 315 KQALLGSTTKAPRWAVAYKFPSESTVTRLLDIEVSVGRTGRVTPYAVLQPIQLDGSEVSR 374 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+ I G +D+ +GD V +++AG+++P+V+ + +R F Sbjct: 375 ATLHNQKVI-----------GDKDLLIGDYVRIRKAGDIVPEVLCALPEKRDGSEVLFKM 423 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ- 489 PS CP C + + + K G + RC +C Q RL++ SR +I L ++ Sbjct: 424 PSLCPSCGAEL---MPSKLGDI--DLRCPNMQSCLVQLAGRLEYIGSRGVLDIAYLAEEN 478 Query: 490 -----QLDFFFKS-EDPAFSIRIPADIFTLQRRQQTST-----TKIENILGFGDV--SVT 536 L F KS E F I I D+ L+ + + K ++ GF + S Sbjct: 479 AYALSHLRKFGKSAEVQLFKITI-DDLVALEFMYKGNMRSPFRKKGDSFPGFEEPTKSAQ 537 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 ++ DSI + + L +F+ +L IRH+G A++LA ++ S I +II D+ Sbjct: 538 DMVDSIERAKRSPLWKFLLALNIRHIGPASAKALADHFGS-------IESIINAKIDE-- 588 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNI 622 L++V +G+ IA ++ +++++P + Sbjct: 589 -LLKVRSLGETIAISVHDWFRDPWRV 613 >gi|145218922|ref|YP_001129631.1| DNA ligase, NAD-dependent [Prosthecochloris vibrioformis DSM 265] gi|145205086|gb|ABP36129.1| DNA ligase, NAD-dependent [Chlorobium phaeovibrioides DSM 265] Length = 488 Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 176/535 (32%), Positives = 278/535 (51%), Gaps = 56/535 (10%) Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + K DF ALND R +ANPRNA +G L+ + ++ R L F + L + Sbjct: 1 MRKEDFTALNDTRPEEDR--FANPRNATAGTLKLQDSAEVAVRRLWFVAYYLDGIQDPDT 58 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + LQ + GF R I ++ R LPY+ DG+V K+++ Sbjct: 59 P-HFHRLQLLETAGFFTGGHYRLCKGMQEIAAFIARWNEERWHLPYETDGVVLKLNDVRQ 117 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 K LG ++SPRW I++K+ +QA+T L D+ Q+GR G +TPVA LEPV + G+ ++ + Sbjct: 118 WKTLGATSKSPRWAIAYKYPAQQATTVLRDVVFQVGRLGTITPVAELEPVRLAGSTVSRS 177 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D ++ L I +GDRV+++++GEVIPKV+ ++ R DA+ P Sbjct: 178 TLHNFDEMRRL-----------GIMIGDRVVIEKSGEVIPKVIRVVTEARPVDARLVELP 226 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK--- 488 S CP C + +VR+ G++ C C AQ R+ HF SR+A +I+ LG+ Sbjct: 227 SRCPACSTPIVRE----EGEV--GFYCPNEAGCPAQLKGRILHFASRNAMDIQNLGEALV 280 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +QL F D P D++ LQ Q + N+ G S N+ ++++ R+ Sbjct: 281 EQLVAFGLVHD-------PGDLYFLQEPQ------LRNLERMGPKSAQNVVRALDESRSQ 327 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S R +F+LGIRHVG AR LA+ + S + +A D +G +I Sbjct: 328 SYARLLFALGIRHVGQATARELARAFPSIEALEAASEEELADVAD----------IGPVI 377 Query: 609 AQAIVEFYQNPRNICAVEALLKEVS----PSIGRHEKN-VSSEIENKKLVFTGTLQKIQR 663 A++I E+++ P AV ALL+++ P K ++S E +VFTG L + R Sbjct: 378 ARSIREWFEAP----AVSALLEKLRDARLPLAAEDPKPLINSNFEGLSVVFTGALLRHDR 433 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A E V + G + + +S+KT +++ G GSKLEKA +LG+++++EE+F +L Sbjct: 434 QSASELVLERGGKIVSTVSKKTGLVVAGREAGSKLEKALKLGLRVISEEEFEAML 488 >gi|308235729|ref|ZP_07666466.1| DNA ligase (NAD(+)) [Gardnerella vaginalis ATCC 14018] gi|311114720|ref|YP_003985941.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019] gi|310946214|gb|ADP38918.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019] Length = 960 Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 170/516 (32%), Positives = 264/516 (51%), Gaps = 53/516 (10%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L+ EQA + + L YY P D+ YD R ++ FP L + P Sbjct: 99 LTSEQAARLWAKLAAWAQSDQIAYYVDDSPSSSDAAYDTRMRVLSSLESTFPIL---DTP 155 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P +++GG + V H +SL+ ++++E+L+ + I R + + + T E Sbjct: 156 QSPTHRVGGTFSNDFASVKHPSRMMSLDDVFSLEELKSWYDSIIRDLKWPQNKPLPMTCE 215 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEV 187 KIDG + + Y G RGDG +GED+S +R I IP L S +IPE +E+ Sbjct: 216 VKIDGLALNLIYRNGTLEQGLTRGDGVTGEDISLNVRTIEEIPTQLKCENSDDIPEFVEI 275 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG-- 244 RGEV++ DF LN E +G+ +ANPRNAA+G LR+ +P TR L+F HGLG Sbjct: 276 RGEVFMKWADFRKLNIEQEDLGKPAFANPRNAAAGSLRQKDPRITATRRLSFIAHGLGDL 335 Query: 245 ---------------KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYN 286 K + YE+ +K G PV+ R+ +F I + YY Sbjct: 336 KWKDSVRNDSEHKSHKQTSFNQSDAYELYKKW---GIPVSPYTRKVTSFEQIEDMIEYYG 392 Query: 287 EMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQI 346 E R+++ + +DG+V KVD+ +LQ++LG +R+PRW I++K+ ++ +T L DI +Q+ Sbjct: 393 EH---RNSIIHALDGIVVKVDDRALQRELGSTSRAPRWAIAYKYPPEEVNTVLKDIVVQV 449 Query: 347 GRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRA 406 GRTG +TPVA L+PV + G+ I+ TLHN ++ + + +GD V+V++A Sbjct: 450 GRTGRVTPVAVLDPVTVAGSTISRTTLHNPYEVE-----------HKGVLIGDTVVVRKA 498 Query: 407 GEVIPKVVDIIVNERHPDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463 G+VIP++V ++ R + + F P +CP C S++ K G RC Sbjct: 499 GDVIPELVGPVLKYRDGNESKLRKFVMPEYCPSCGSKLAP---AKEGD--KDIRCPNVEN 553 Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 C AQ ER+ + SR AF+IE LG+ ED Sbjct: 554 CPAQLTERIINLASRHAFDIENLGESSALALTNPED 589 Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 17/182 (9%) Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K ++ +L R + +L IR +G AR +A + S +N ++ A D L ++ Sbjct: 768 KGKSATLWRVLVALSIRRLGPPTARLIAARFGSIENISK------ASVED----LTQIDG 817 Query: 604 VGDIIAQAIVEFYQNPRNI--CAVEALLKE-----VSPSIGRHEKNVSSEIENKKLVFTG 656 VG IAQA+ ++++ +N E L K V S + ++ + K +V TG Sbjct: 818 VGPEIAQAVYDWFEKSKNPQDWRSEVLRKWNEAGVVGSSDSSNADSIEQTLSGKTVVVTG 877 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+ R A+E ++ G ++ +S+KT +IVG+N GSK KA++LG+ +++E QF Sbjct: 878 SLEGFTRDSAKEAISSRGGKAASSVSKKTYCVIVGENAGSKATKAEELGIPMLDENQFKI 937 Query: 717 LL 718 LL Sbjct: 938 LL 939 >gi|237751760|ref|ZP_04582240.1| NAD-dependent DNA ligase LigA [Helicobacter bilis ATCC 43879] gi|229373126|gb|EEO23517.1| NAD-dependent DNA ligase LigA [Helicobacter bilis ATCC 43879] Length = 686 Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 215/724 (29%), Positives = 339/724 (46%), Gaps = 101/724 (13%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPD-LARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ PI D EYD L + D +A+ + P +IG ++ K H Sbjct: 24 YYELDDPIASDFEYDMLYKAVKLYEENNIDKIAK----DSPTQRIGDKILKDFSKNKHKK 79 Query: 94 PTLSLEKIWNIEDLRKFITRIYRF-----------------WQKKDDNSIFFTLEPKIDG 136 SLE I+N DL +++T++ Q N++ F + PK DG Sbjct: 80 RMWSLEDIFNPSDLDEWLTKLSNAIARVQKTTLSPTLFDTETQIDSINNLAFCISPKYDG 139 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + YE G A RGDG GE V+ + + ++P + IE+RGEV +SK Sbjct: 140 MSLNLLYENGILQSATTRGDGEIGEVVTQNAKTLHSLPHTIPFKGS--IEIRGEVVLSKE 197 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHGLG----KTSEIF 250 +F LN E + +ANPRNAA+G +R+L+ +++TR L+F G+G K E + Sbjct: 198 NFARLNKEQERNNKALFANPRNAAAGSMRQLD-SNLTRERNLSFVAWGIGSVDMKELEKY 256 Query: 251 AK----GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 AK G Y+ML + GF + + N I Y ++ + R P+ +DG V + Sbjct: 257 AKRSNLGFYDMLMLLPEFGFSPFRYLERVNA-ESIEREYQKILNDRDNYPFMLDGFVIVL 315 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQ +LG ++PR+ ++KF + + I Q+GRTGI+TPVA +P + GA Sbjct: 316 DDLALQDKLGFTQKAPRFACAYKFPATEVVINIESITPQVGRTGIITPVANFKPTPLDGA 375 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I+ ATLHN K +D +DIR+ D L+ R+G+VIPK+ ++ R D Sbjct: 376 FISRATLHN---YKEIDQ--------KDIRIRDYCLLVRSGDVIPKITKVLHERRKGDEI 424 Query: 427 PFSFPSFCPICQSRVVRD------LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 + P+ CPIC + + NP ++ A +L HF S+ Sbjct: 425 KIAKPTHCPICSHELSYEDIYIYCTNPNCDAIIKA---------------KLIHFASKKC 469 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTN 537 +I+GLG ++ + I+ DI++L+ E+ L GF + N Sbjct: 470 MDIDGLGSSIIELLVDNG----VIKECKDIYSLKE---------EDFLRFEGFKEKKAQN 516 Query: 538 LYDSINKR-RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 L ++I N RFI +LGI H+G ++ LA Y Y+ F +I Sbjct: 517 LINAIKDSIENREFWRFIHALGILHIGEVASKKLASY--GYEIFDYDIE----------- 563 Query: 597 SLIRVPLVGDIIAQAIVEF-YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 L + G +AQ+ +F N I ++ +LK + + N S K V T Sbjct: 564 KLQEIEGFGKDMAQSFYDFCIHNKDFINEMQEILKP-QLQVKTTQINTDSIFYQKTCVIT 622 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GT + R + + LGA VS+ +S KTD +I G+ GSKL KAQ+LG+KI+ + + Sbjct: 623 GTFA-LSRDSIKAKLESLGAKVSSSISTKTDFLIAGEKAGSKLTKAQELGIKIIESSELM 681 Query: 716 FLLQ 719 +L+ Sbjct: 682 QILE 685 >gi|28493381|ref|NP_787542.1| DNA ligase [Tropheryma whipplei str. Twist] gi|28476422|gb|AAO44511.1| DNA ligase [Tropheryma whipplei str. Twist] Length = 634 Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 190/626 (30%), Positives = 315/626 (50%), Gaps = 76/626 (12%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK-VTHSI 93 YYQ + ++ D EYDAL+ HA D N P +G L+LF+ V H Sbjct: 32 YYQENTSLMSDVEYDALEHELKDAEHA----KGFSDRNSPSLTVGIAAQLNLFEPVKHIE 87 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL+ +++++ L + + + + D + F E KIDG +++RY G + AA Sbjct: 88 PMLSLDNVFSLDQLHSWYEKTKKICPEGDQCT--FVCELKIDGVGVSLRYANGYLISAAT 145 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + +P+IP ++L P I E+RGE +I +++F +N ++ K + Sbjct: 146 RGDGAIGEDITQNMLYVPSIPPRIAL--PGIFEIRGEAFIKRDEFDRIN-QLSLERSKQF 202 Query: 214 ANPRNAASGILRRLNPTDITRYL---NFFVHGLGKT-----------SEIFAKG------ 253 ANPRN SG +R P RYL +F+ HG + S+I A G Sbjct: 203 ANPRNFVSGCIRTKTPN--MRYLESISFYAHGFTQVYGYTSGGMNLHSDITASGGVKTEI 260 Query: 254 ---QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + ++ PVN+ R F I SY ++ R +PY IDG+V K+D Sbjct: 261 EHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRLNRQCVPYAIDGIVVKIDSLQ 320 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q LG ++PRW +++KF + TRLLDI++ +GRTG +TP A L+P+ + G+ ++ Sbjct: 321 KQALLGSTTKAPRWAVAYKFPSESTVTRLLDIEVSVGRTGRVTPYAVLQPIQLDGSEVSR 380 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN+ I G +D+ +GD V +++AG+++P+V+ + +R F Sbjct: 381 ATLHNQKVI-----------GDKDLLIGDYVRIRKAGDIVPEVLCALPEKRDGSEVLFKM 429 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ- 489 PS CP C + + + K G + RC +C Q RL++ SR +I L ++ Sbjct: 430 PSLCPSCGAEL---MPSKLGDI--DLRCPNMQSCLVQLAGRLEYIGSRGVLDIAYLAEEN 484 Query: 490 -----QLDFFFKS-EDPAFSIRIPADIFTLQRRQQTST-----TKIENILGFGDV--SVT 536 L F KS E F I I D+ L+ + + K ++ GF + S Sbjct: 485 AYALSHLRKFGKSAEVQLFKITID-DLVALEFMYKGNMRSPFRKKGDSFPGFEEPTKSAQ 543 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 ++ DSI + + L +F+ +L IRH+G A++LA ++ S I +II D+ Sbjct: 544 DMVDSIERAKRSPLWKFLLALNIRHIGPASAKALADHFGS-------IESIINAKIDE-- 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNI 622 L++V +G+ IA ++ +++++P + Sbjct: 595 -LLKVRSLGETIAISVHDWFRDPWRV 619 >gi|57168176|ref|ZP_00367315.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228] gi|57020550|gb|EAL57219.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228] Length = 467 Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 162/467 (34%), Positives = 257/467 (55%), Gaps = 40/467 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHSI 93 YY+ +P+ D EYDAL R F + + E + P KI + K+ H Sbjct: 20 YYEKDEPLASDEEYDALIREL----RVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 L+++W++ED+ F R W K+ F +EPK DG + + Y+KG+ V A Sbjct: 74 ----LKRMWSMEDV--FDESELRAWAKRARCEENFFIEPKFDGASLNLLYDKGRLVSGAT 127 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GED++ + I IP+ ++N E IE+RGEV I K+DF +N++ + + + Sbjct: 128 RGDGEIGEDITLNVLEIDNIPK--TINYKEKIEIRGEVVILKDDFEKINEKRARLNQSLF 185 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 ANPRNAASG LR+L+ T IT R L F+ G+G+ + F K E++Q +R LGF ++ Sbjct: 186 ANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGFLKDDF 243 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 ++ ++ YNE+ S+R P +DG+V +VD+ +L K+LG + P++M + KF Sbjct: 244 IKLCANLDEVLKAYNELLSLRDKKPMMMDGMVVRVDDLALCKELGHTVKFPKFMAAFKFP 303 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + +TRL+ +++Q+GR+G++TPVA LEPVN+ G ++ +ATLHN D I L Sbjct: 304 ALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNFDEIARLGVC------ 357 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 + D V V R+G+VIPK+ + R+ P+ CP C S ++ + Sbjct: 358 -----INDEVSVIRSGDVIPKITKVF-KIRNNLRTKIIKPTVCPECLSELLDE------- 404 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 A +C L C A+ + + HFVS+ NI+GLG+ ++ FK + Sbjct: 405 -GAFLKCQ-NLDCKARLVNSIIHFVSKKCLNIDGLGENIVELLFKEK 449 >gi|284031885|ref|YP_003381816.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836] gi|283811178|gb|ADB33017.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836] Length = 671 Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 210/726 (28%), Positives = 347/726 (47%), Gaps = 85/726 (11%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + +L +I D YY+ P + D+EYDA++ A+ A P+LA DPN PL+++ Sbjct: 12 ERIETLADQIVQLRDAYYR-GAPAVADAEYDAIEDELRALIAAHPELA--PDPN-PLDQV 67 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G L V HS P LSLEK E + F R F + + PK+DG Sbjct: 68 GAPAVLHA-PVRHSRPMLSLEKATRPEQVEAFFNR---FPGRS------VVVMPKLDGLS 117 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT-IPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G+ A RGDG +G+DV+ +RA+ +P ++ P +EVRGE + ++ Sbjct: 118 LALVYEDGQLARAITRGDGTTGDDVTPLVRALADGVP--AKIDAPGRVEVRGEAVMLRST 175 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F A N A KP NPRNAA+G LR +P + R L F L + + Sbjct: 176 FAAYN---AAHPDKPLINPRNAAAGTLRAKDPATVAERRLQFLAFDLHTDPD---STDSD 229 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + + +R LGF V + +R + + ++ R+ L YD+DG V ++ + G Sbjct: 230 LDRALRTLGFAVAD-MRHCDDAAAAQAVITTIEQQRNDLDYDLDGAVLRLADRDAFAAAG 288 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 R+ SPR +++KFA ++ +T L D+ +G+TG + PVA LEPV +GG +T ATL N+ Sbjct: 289 TRSSSPRGALAYKFAAEEKTTVLADVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLANQ 348 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA-QPFSFPSFCP 435 + I+ R I++GD VLV+RAG+VIP V ++ R A Q P+ CP Sbjct: 349 EVIR-----------ARGIKIGDTVLVRRAGDVIPFVAGVLDASRRTGAEQDIVPPTNCP 397 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + N + +L CT ++C AQ + RL H+ SR A +I+ +G ++ Sbjct: 398 SCGQPLTEQGNSR--ELF----CT-NVSCPAQTVRRLIHWASRAAADIDAIGGVWIERLA 450 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + A + P+D + L + + +I G+VS + +SI+ R + L R + Sbjct: 451 E----AGILEHPSDFYHLTKEKLLEFDRI------GEVSAARMIESIDASRQVGLRRALI 500 Query: 556 SLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 L + A L + + S + A L+ V +G +A ++VE Sbjct: 501 GLAVPMASEGTAARLCRAGFGSLEEVADAGEE----------GLVAVEDIGPKVAASLVE 550 Query: 615 FYQNPR--------NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL------QK 660 R +++ L +++ P + + + K +V TG + +K Sbjct: 551 HLSRLRPELERLRAAGVSLDVLEEDLPPVVA-----AGAPLAGKTVVVTGAISDPRSGEK 605 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + R Q GA +++ +S TD +I G + G +KL KA++LGV+++++ + L Sbjct: 606 VARPAFQRLCESAGATIASSVSASTDYLITGADVGAAKLTKAEKLGVEVVDQSEIWSQLF 665 Query: 720 QYNTTL 725 TL Sbjct: 666 AAGITL 671 >gi|166711580|ref|ZP_02242787.1| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzicola BLS256] Length = 590 Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 181/608 (29%), Positives = 292/608 (48%), Gaps = 163/608 (26%) Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ML ++R GFPV++ V G+++YY + R LP+DIDG+VYK+D+ + Q+++G Sbjct: 1 MLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKLDDLAGQREMG 60 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW ++HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN Sbjct: 61 FVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNA 120 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I LD +RVGD V+V+RAG+VIP+V ++ ++R P QP+ P+ CP+ Sbjct: 121 DQIARLD-----------VRVGDTVIVRRAGDVIPEVAAVVADQRPPATQPWQMPTQCPV 169 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL----- 491 C S +VR+ G+ A RC+G L C AQ+ E +HFVSR A +++GLG++ + Sbjct: 170 CGSEIVRE----EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVD 223 Query: 492 --------DFFFKSEDPAFSIRIPADI-----FTLQRRQQTST---TKIE-NILGFG--- 531 D + + D +R+ + + F + R+ ++ ++E ++G G Sbjct: 224 SGVVQGVADLYLLTVDQLLQLRMISTVESPHAFLREAREHLASGAYAQLEATVVGIGVDL 283 Query: 532 ----DVSVT--------------------------NLYDSINKRRNISLERFIFSLGI-- 559 +VS T NL ++I R+ +LERF+F+LGI Sbjct: 284 AGEREVSQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEH 343 Query: 560 -------------------RH-----------VGAEIARSLAKYY--------------- 574 RH +G E+ARSL ++ Sbjct: 344 VGESTAKALSAWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQPGNQKAIDHLLAR 403 Query: 575 -----------------LSYQNFAQEI-----------------NNIIAHNNDDWLSLIR 600 LS N +++ +I A N L+ Sbjct: 404 KVRIGDTHPPSPKLRGELSLANLLEDLEIPKVTPIRAAQIAAAFGSIDALRNGGPEPLVE 463 Query: 601 VPLVGDIIAQAIVEFYQNPRN-ICAVEA-----LLKEVSPSIGRHEKNVSSEIENKKLVF 654 V +A+++ + P N AV A L + P G + + ++ + +V Sbjct: 464 AG-VPQSVAESLATWLLVPANDTLAVNAQKKLSALLAMMPEAGEEK---TGPLDGQTVVI 519 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL + R A++ + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + Sbjct: 520 TGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDETRL 579 Query: 715 LFLLQQYN 722 L L ++ Sbjct: 580 LAFLGEHG 587 >gi|296128966|ref|YP_003636216.1| DNA ligase, NAD-dependent [Cellulomonas flavigena DSM 20109] gi|296020781|gb|ADG74017.1| DNA ligase, NAD-dependent [Cellulomonas flavigena DSM 20109] Length = 824 Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 163/484 (33%), Positives = 250/484 (51%), Gaps = 32/484 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R ++L ++I YY P D+ YD R + + P L P+ P Sbjct: 16 EVRHRWTALAEQIRADQFAYYVRDAPSSSDAAYDERMRELERLEDEHPGL---RTPDSPT 72 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + V H LSL+ ++ EDL + R+ R + + + E KID Sbjct: 73 QQVGGTFSTEFTAVDHVERMLSLDNAFSREDLVAWAERVQRDLEST--VPVEYLCELKID 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI---PEIIEVRGEVY 192 G I + YEKG+ V AA RGDG +GEDV+ +R I TIP VL + P++IE+RGEV+ Sbjct: 131 GLAIALLYEKGRLVRAATRGDGRTGEDVTLNVRTISTIPDVLGGDPATHPDVIEIRGEVF 190 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFA 251 + + F ALN+ +A GR P+ANPRNAA+G LR+ +P R L + HG+G + Sbjct: 191 LPVDAFRALNEAQVAAGRAPFANPRNAAAGSLRQKDPRVTAARPLRMYAHGIGALTWGDG 250 Query: 252 KG-----QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 +G Q ++ + G P + R + + R + ++IDG+V KV Sbjct: 251 RGTGIDRQSQVYDLLAGWGVPTSTHTRVVGSLDEVWDRVAHFGEHRHDVEHEIDGVVVKV 310 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+ +LQ++LG +R+PRW I++K+ ++ +TRLL I++ IGRTG TP A +EPV + G+ Sbjct: 311 DDIALQRRLGATSRAPRWAIAYKYPPEEVNTRLLAIELGIGRTGRATPFAVMEPVLVAGS 370 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN+D +K D V++++AG+VIP++V D Sbjct: 371 TVRQATLHNQDVVKVKGVRVG-----------DMVVLRKAGDVIPEIVGPAPQAPDDDVP 419 Query: 427 --PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + P+ CP C + +R + L RC C AQ RL+H SR AF+IE Sbjct: 420 RVEWHMPADCPECGT-PLRPMREGDVDL----RCPNAQGCPAQVRGRLEHIGSRGAFDIE 474 Query: 485 GLGK 488 LG+ Sbjct: 475 VLGE 478 Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 44/220 (20%) Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ--------------NFAQ 582 L D ++ + L R I +L IRHVG AR+LA+ + S + Q Sbjct: 588 TLLDQLDLAKTKELWRAIVALSIRHVGPTAARALAQEFGSMAALRAVVDPTARGAVDAPQ 647 Query: 583 EINNIIAHNNDDWLSLIR------------------VPLVGDIIAQAIVEFYQNP--RNI 622 E + A +D I V VG IA+++++++ P R I Sbjct: 648 EAVDGGAVADDAVEGSIADEDGAPAADAAAVARLAGVEGVGPTIARSLLDWFAEPWHREI 707 Query: 623 ----CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 A ++++ +++ +E +V TG+L++ R A+E + G S Sbjct: 708 VDRWAAAGVVMQDAV------DESTPRTLEGVTVVVTGSLERFSRDGAKEAILGRGGKAS 761 Query: 679 AILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +SRKTD ++VG+N GSK KA++LG++I++E F LL Sbjct: 762 GSVSRKTDFVVVGENAGSKETKARELGLRILDEAGFEALL 801 >gi|239945456|ref|ZP_04697393.1| putative NAD-dependent DNA ligase [Streptomyces roseosporus NRRL 15998] gi|239991920|ref|ZP_04712584.1| putative NAD-dependent DNA ligase [Streptomyces roseosporus NRRL 11379] Length = 702 Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 202/709 (28%), Positives = 326/709 (45%), Gaps = 77/709 (10%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D YD L R A P+ + P G K+ G ++ V H++P LSL+ +++ Sbjct: 32 DDAYDRLARGIAAYEADHPEEVLAASPTG---KVAG--GAAVGDVPHTVPMLSLDNVFSA 86 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164 E +F T ++ +++EPK+DG + RY G+F RGDG +GEDVS Sbjct: 87 E---QFATWTASLERRIGRPVTAWSVEPKLDGLAVAARYRDGRFERLITRGDGTAGEDVS 143 Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224 A+ +P L+ P IEVRGE+ ++ + F N G P+ANPRN A+G L Sbjct: 144 HAAGAVVGLPERLAE--PVTIEVRGEILMTNDQFDQGNAIRTEHGGAPFANPRNGAAGTL 201 Query: 225 R---RLNPTDITRYLNFFVHGL------GKTSEIFAKGQY-EMLQKMRCLGFPVNNGVRQ 274 R R + T FF +G G+ E A+ + E+L + LG G Sbjct: 202 RAKDRAYRVETT----FFAYGALPLPDSGELGETLAELPHSEILSYVAGLGVHTAAGTDV 257 Query: 275 ANTFHGIV----SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 A V + + + +R+ LP+ IDG+V K D + Q++ G R+PRW I++K Sbjct: 258 APVLAATVEEVQARVDAIGPLRAALPFGIDGIVIKADLAADQREAGSGTRAPRWAIAYKL 317 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 + TRL+ ++ +GRTGI+ P A LEPV I G+ + ATLHN + R Sbjct: 318 PAVEKITRLVSVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHN---------PADITR 368 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 RD+R+GD+V+V +AG++IP++ +V+ R D P FP CP C S + D + + Sbjct: 369 --RDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIDFPESCPQCGSAI--DTSEQR- 423 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 RCT G C + + + + RD +IEGLG ++ A + AD+ Sbjct: 424 -----WRCTRGRNC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADFADL 472 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 FTL+R Q + ++ G+ S NL +I R L R +LG+R G ++R + Sbjct: 473 FTLEREQLLALDRM------GETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSRRI 526 Query: 571 AKYYLSYQNFA-------QEINNIIAHN--NDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 A+Y+ + Q ++ I PL+ ++A + Sbjct: 527 ARYFATMDRIVAADVETLQRVDGIGKEKAAAVVAELAELAPLIAKLVAAGVNMTEPGATP 586 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTG----TLQKIQRHKAQEYVTQ 672 + + + +V TG L+K+ R++ E + + Sbjct: 587 PPEPGTEEEAAAAGADAEAGGEGGTGPTLPLAGMTVVVTGAMTGALEKLSRNQMNELIER 646 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G S+ +S++T +++ GD GSK KA+ LGV+I E+F L+ + Sbjct: 647 AGGKSSSSVSKRTSLLVAGDKAGSKRTKAEDLGVRIAVPEEFAELVGAF 695 >gi|291448912|ref|ZP_06588302.1| DNA ligase [Streptomyces roseosporus NRRL 15998] gi|291351859|gb|EFE78763.1| DNA ligase [Streptomyces roseosporus NRRL 15998] Length = 710 Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 202/709 (28%), Positives = 325/709 (45%), Gaps = 77/709 (10%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D YD L R A P+ + P G K+ G ++ V H++P LSL+ +++ Sbjct: 40 DDAYDRLARGIAAYEADHPEEVLAASPTG---KVAG--GAAVGDVPHTVPMLSLDNVFSA 94 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS 164 E +F T ++ +++EPK+DG + RY G+F RGDG +GEDVS Sbjct: 95 E---QFATWTASLERRIGRPVTAWSVEPKLDGLAVAARYRDGRFERLITRGDGTAGEDVS 151 Query: 165 ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL 224 A+ +P L+ P IEVRGE+ ++ + F N G P+ANPRN A+G L Sbjct: 152 HAAGAVVGLPERLAE--PVTIEVRGEILMTNDQFDQGNAIRTEHGGAPFANPRNGAAGTL 209 Query: 225 R---RLNPTDITRYLNFFVHGL------GKTSEIFAKGQY-EMLQKMRCLGFPVNNGVRQ 274 R R + T FF +G G+ E A+ + E+L + LG G Sbjct: 210 RAKDRAYRVETT----FFAYGALPLPDSGELGETLAELPHSEILSYVAGLGVHTAAGTDV 265 Query: 275 ANTFHGIV----SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 A V + + + +R+ LP+ IDG+V K D + Q++ G R+PRW I++K Sbjct: 266 APVLAATVEEVQARVDAIGPLRAALPFGIDGIVIKADLAADQREAGSGTRAPRWAIAYKL 325 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 + TRL+ ++ +GRTGI+ P A LEPV I G+ + ATLHN I Sbjct: 326 PAVEKITRLVSVEWNVGRTGIIAPRAVLEPVEIDGSTVGYATLHNPADIT---------- 375 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 RD+R+GD+V+V +AG++IP++ +V+ R D P FP CP C S + D + + Sbjct: 376 -RRDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIDFPESCPQCGSAI--DTSEQR- 431 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 RCT G C + + + + RD +IEGLG ++ A + AD+ Sbjct: 432 -----WRCTRGRNC--RLVASVSYAAGRDQLDIEGLGATRVVQLVD----AGLVADFADL 480 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 FTL+R Q + ++ G+ S NL +I R L R +LG+R G ++R + Sbjct: 481 FTLEREQLLALDRM------GETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSRRI 534 Query: 571 AKYYLSYQNFA-------QEINNIIAHN--NDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 A+Y+ + Q ++ I PL+ ++A + Sbjct: 535 ARYFATMDRIVAADVETLQRVDGIGKEKAAAVVAELAELAPLIAKLVAAGVNMTEPGATP 594 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE-----IENKKLVFTG----TLQKIQRHKAQEYVTQ 672 + + + +V TG L+K+ R++ E + + Sbjct: 595 PPEPGTEEEAAAAGADAEAGGEGGTGPTLPLAGMTVVVTGAMTGALEKLSRNQMNELIER 654 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 G S+ +S++T +++ GD GSK KA+ LGV+I E+F L+ + Sbjct: 655 AGGKSSSSVSKRTSLLVAGDKAGSKRTKAEDLGVRIAVPEEFAELVGAF 703 >gi|229825369|ref|ZP_04451438.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC 49176] gi|229790373|gb|EEP26487.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC 49176] Length = 664 Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 218/705 (30%), Positives = 351/705 (49%), Gaps = 81/705 (11%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK-IGGEMNLSLFKVTHS 92 YY S I+ ++EYD L +A+ + + G L K +G E+ SL K H Sbjct: 23 AYYAESTEIMSNAEYDKLYDELEALENETGIVLA-----GSLTKKVGYEVLSSLPKKAHK 77 Query: 93 IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152 P LSL K ++ +L F+ D I K+DG I + YE G+ V A Sbjct: 78 EPRLSLSKTKDVGELASFLG---------DKEGILMW---KLDGLTIVLTYENGELVEAL 125 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RG+G GE V+ R IP V+ + VRGE I +DF +N+E+ V K Sbjct: 126 TRGNGEIGEVVTENARFFENIPLVIPYKGS--LMVRGEAIIKYSDFNRINEEITDVAEK- 182 Query: 213 YANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270 Y NPRN SG +R+L+ T++T R +NF V+ + E F K + E L + LGF V + Sbjct: 183 YKNPRNLCSGSVRQLS-TEVTAKRNVNFIVYEDLEGGEKF-KTREEELNYLESLGFTVVD 240 Query: 271 G--VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 V + N + Y N +K+ S LP D GLV + ++ + LG ++ PR I+ Sbjct: 241 HPLVNRDNLEKEVREYENRIKT--SDLPSD--GLVLQFNDIAYGNSLGRTSKFPRHSIAF 296 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 K+ ++ A T L +I+ RTG++ PVA + V + G +T A++HN ++ L Sbjct: 297 KWKDETAETTLREIEWSASRTGLINPVAIFDAVELEGTTVTRASVHNVSIMRSL------ 350 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 + VGDR+ V +A +IP+++ E ++ P+ CP+C + +L + Sbjct: 351 -----KLGVGDRIKVYKANMIIPQIL-----ENLTESNAEEVPTVCPVCGGKT--ELKDE 398 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 G V CT C A++L+ L HFVSRDA NI GL + L+ F I + Sbjct: 399 EG--VQTLYCTNP-DCMAKRLKLLTHFVSRDAMNIAGLSEMTLEKFVAEN----MIHELS 451 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D+F L ++ KI + GFG+ S NL +S++K R + R ++SLGI ++G A+ Sbjct: 452 DVFKLANHKE----KIVTMEGFGERSYNNLIESLDKARETTAVRILYSLGIANIGLATAK 507 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 + +Y F + + II ++ L ++ +G+++A+ E++ NI +E L Sbjct: 508 LICRY------FNNDFDKIIKAKEEE---LTQIDGIGEVMAKVFAEYFNKDENIKTLEHL 558 Query: 629 LKEVS-PSIGRHEKN------VSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAI 680 L EV +++N V++ I V TG ++K + R + E++ G V+ Sbjct: 559 LAEVHIEKSAENDQNTEGDDEVNNAIAGLTFVITGDVEKFKNRRELSEFIESKGGKVTGS 618 Query: 681 LSRKTDIIIVGD---NPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 ++ KT+ +I D N G K +KA++LGVKI++E +FL L+ N Sbjct: 619 VTGKTNYLINNDVTSNSG-KNKKAKELGVKIISENEFLELVGGNN 662 >gi|300785073|ref|YP_003765364.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32] gi|299794587|gb|ADJ44962.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32] Length = 663 Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 208/719 (28%), Positives = 347/719 (48%), Gaps = 89/719 (12%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A++ + L I+ D YY+ S P++ D+EYDA++ ++ A P+ + DPN PL+ Sbjct: 3 AQERIPELADRITVLRDAYYRGS-PLVADAEYDAVEDELRSLIEAHPEF--TPDPN-PLD 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G L + HS P LSLEK E + F R + PK+DG Sbjct: 59 QVGAPAVLHA-PIRHSRPMLSLEKATKPEQVEAFFDRF---------PGQPVVVMPKLDG 108 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPT-IPRVLSLNIPEIIEVRGEVYISK 195 + + YE G+ A RGDG +G+DV+ +RA+ IP + P +EVRGE + + Sbjct: 109 LSLAVVYENGRLARAVTRGDGTTGDDVTKLVRALTDGIPE--QVEAPGRVEVRGEAVMLR 166 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 + F A N A KP NPRNAA+G LR +P + R L FF L + + Sbjct: 167 STFAAYN---TAHPDKPLINPRNAAAGTLRAKDPATVAERRLRFFAFDLYTEPD---SAE 220 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ + LGF + R A+ S E++ R+ L YD+DG V ++ Sbjct: 221 TDLGSALHTLGFTAADMRRCADAAEA-QSVIGEIEQQRNELDYDLDGAVLRLASRDAYAA 279 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 G R+ SPR ++ KFA ++ +T L D+ +G+TG + PVA LEPV +GG +T ATL Sbjct: 280 AGTRSSSPRGALAFKFAAEEKTTVLSDVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLA 339 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERHPDAQPFSFPSF 433 N++ I+ R I++GD VLV+RAG+VIP V ++ ++R + P Sbjct: 340 NQEVIR-----------ARGIKIGDTVLVRRAGDVIPFVAGVLDASKRTGAEREIVPPEV 388 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP C + N + +L CT ++C AQ + RL H+ SR A +I+ +G ++ Sbjct: 389 CPSCGQPLTEQGNSR--ELF----CT-NVSCPAQTVRRLIHWASRAAADIDAIGGVWIER 441 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISL 550 + A + P+D + L + E +L F G+VS T + +SI+ R + L Sbjct: 442 LAE----AGILENPSDFYGLTK---------EKLLEFDRIGEVSATRMIESIDASRGVGL 488 Query: 551 ERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQE-INNIIAHNNDDWLSLIRVPLVGDII 608 R + L I A L + + S ++ A+ ++ ++A + +G + Sbjct: 489 RRALIGLAIPMASEGTAARLCRAGFGSLEDVAEAGVDGLVAVED-----------IGPKV 537 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTL---- 658 A +++E R L++ S+ E+++ + + K +V TG + Sbjct: 538 AASLIEHLTRLRPEL---ERLRKAGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPR 594 Query: 659 --QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714 +K+ R Q + GA + +S TD++I G + G SKL KA++ GV+++++ + Sbjct: 595 SGEKVPRPTFQRLCERAGATTATSVSASTDLLITGADVGASKLTKAEKHGVEVVDQGEI 653 >gi|317499031|ref|ZP_07957312.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893681|gb|EFV15882.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA] Length = 651 Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 211/700 (30%), Positives = 341/700 (48%), Gaps = 85/700 (12%) Query: 34 CYYQYSKPIILDSEYD-------ALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 YYQ +K ++ + EYD L+++ + + N P +G E+ L Sbjct: 20 AYYQQNKEVMSNLEYDKMYDELLELEKKTNTVL-----------SNSPTIHVGYELMTVL 68 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 K H P LSL+K + L ++ N L K+DG I + YE G Sbjct: 69 EKEAHPSPMLSLDKTKEPDQLATWL------------NGQEGILSWKLDGLTIVLTYEHG 116 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 K + A RG+G GE V+ R +PR ++ +I RGE I +DF +N+E+ Sbjct: 117 KLLKAVTRGNGEVGEVVTNNARVFENVPRRIAYQGTLVI--RGEAIIPYSDFYKMNEEIE 174 Query: 207 AVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM-LQKMRC 263 V + Y NPRN SG +R+LN +IT R+++F+ + + +E L + Sbjct: 175 DVDSQ-YKNPRNLCSGSVRQLN-NEITAKRHVHFYAFSVSDVEGMDFDNSFEKKLDWVAS 232 Query: 264 LGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 LGF V +R +T G + +++ K + LP D GLV D+ + K LG A+ P Sbjct: 233 LGFDVVEHIRVTEDTIRGEIEKFSK-KIEQFDLPSD--GLVLVYDDLAYGKSLGRTAKFP 289 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 R I+ K+A++ A T L +I+ RTG++ PVA EPV + G ++ A+LHN ++ L Sbjct: 290 RDSIAFKWADETAETTLTEIEWSPSRTGLINPVAIFEPVELEGTTVSRASLHNISVMEEL 349 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV- 441 + +GD ++V +A +IP++ E + P CP C Sbjct: 350 -----------QLGIGDEIVVYKANMIIPQLA-----ENKTKSGNIEIPHTCPACGGETK 393 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + D N + CT CSA++++ HFVSRDA N++GL + L K D Sbjct: 394 IEDENG-----IRTLVCTNEF-CSAKKIKSFSHFVSRDAMNVDGLSEATLQ---KMIDVG 444 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I D+FTL+ ++ +I + GFG+ S NL ++IN + +L FI+SLGI + Sbjct: 445 LLNEI-YDLFTLKDHKE----EILELEGFGEKSYQNLINAINDSKQPALANFIYSLGIPN 499 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG A+ + K+ F ++ N I + +D+ I + +G +IA+A+V ++ P N Sbjct: 500 VGLSNAKLICKH------FKEDFNAIREADAEDF---IAIDQIGPMIAEAMVSYFHTPHN 550 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAI 680 +E LL+ V + E +E K V TG+L R + +E + Q+G V+ Sbjct: 551 QKILEQLLQYVQFE-KKEESKTEQILEGKTFVVTGSLDHFDNRKQLKEEIEQMGGKVTGS 609 Query: 681 LSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S+KTD +I D + SK +KA +L + I++EE FL L+ Sbjct: 610 VSKKTDYLINNDKMSQSSKNKKAMELNIPILSEEDFLNLI 649 >gi|257069044|ref|YP_003155299.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810] gi|256559862|gb|ACU85709.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810] Length = 871 Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 166/520 (31%), Positives = 259/520 (49%), Gaps = 68/520 (13%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E A++ +++L I YY++ P + D+EYD L++ A+ A P LA +ED P Sbjct: 19 ETAQQRIAALTARIEQARVDYYEHDAPTMADAEYDELEKELRALEEANPQLA-AED--SP 75 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +GG L + H+ SL+ ++++E+LR++ + + + E KI Sbjct: 76 TRTVGGAAAAGLPTIDHAERMQSLDNVFSLEELREWCAHAA----AELGGEVRYLTELKI 131 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYI 193 DG I +RYE G+ V AA RGDG +GEDV+ I IP+ LS P ++EVRGEV++ Sbjct: 132 DGLAINLRYEHGELVTAATRGDGRTGEDVTVNALQIDGIPQRLSGSGHPALVEVRGEVFM 191 Query: 194 SKNDFLALNDEMIAV------------------GRKP----------------YANPRNA 219 DF LND + + GR+P +ANPRN Sbjct: 192 PTADFERLNDLQVELRERAVAESRTRWESRQGSGRRPFDEQRESLAAARRFPTFANPRNT 251 Query: 220 ASGILR----------RLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269 A+G LR R L VHGLG + Q EM + + G P + Sbjct: 252 AAGGLRQQLDKKEGLEREAGEARLAALRLTVHGLGAWPDPPVGSQSEMYELLASWGLPTS 311 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 + ++ + +Y R L ++IDG+V KVD F+ Q+ LG +R+PRW I+ K Sbjct: 312 RYMDVVDSIDEVAAYVEHHGEHRHDLEHEIDGIVVKVDSFAQQRALGSTSRAPRWAIAVK 371 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 F ++ +T+LLDI +Q+GRTG +TP +EPV + G+ + ATLHN+ D V Sbjct: 372 FPPEEVTTKLLDIQVQVGRTGRVTPFGVMEPVTVAGSTVEKATLHNQ-----FD----VE 422 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449 R G + +GD +++++AG+VIP+++ + + R +PF P+ CP C + + + Sbjct: 423 RKG--VLIGDTIVLRKAGDVIPEILAPVESLRDGSERPFVMPAQCPACGTEIRPEREGDK 480 Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 RC C AQ R++H SR AF+IE LG++ Sbjct: 481 D-----WRCPNQRDCPAQVTGRVEHAGSRGAFDIESLGEE 515 Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 10/186 (5%) Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 S L + K ++ L R + +L IRHVG ARSLA Y S + ++ + Sbjct: 656 STEVLISELEKAKSQPLWRVLVALSIRHVGPTAARSLATAYGSMDAIREASVEQLSDTDG 715 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 VG+IIA+A+VE++ + V+ + E+ + +E +V Sbjct: 716 ----------VGEIIAEAVVEWFAVDWHRELVDGWARSGVRMADEVEEGFTKTLEGLTVV 765 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TG L+ R A+E + G S +S+KTD ++VG+N GSK KA++LG++I++E Sbjct: 766 VTGGLEGFTRDGAKEAIITRGGKASGSVSKKTDFVVVGENAGSKETKARELGLRILDEAG 825 Query: 714 FLFLLQ 719 F+ LL+ Sbjct: 826 FVALLE 831 >gi|256377071|ref|YP_003100731.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827] gi|255921374|gb|ACU36885.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827] Length = 674 Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 206/718 (28%), Positives = 344/718 (47%), Gaps = 84/718 (11%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A + + L + D YY+ S P++ D+EYDA + ++ A P+L + DPN PL+ Sbjct: 11 AEERIRDLADRVVSLRDAYYRGS-PLVADAEYDATEDELRSLIAANPEL--TPDPN-PLD 66 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G L V H+ P LSLEK E + F+ R F + + PK+DG Sbjct: 67 QVGAPAVLHA-PVRHARPMLSLEKATQPEQVAAFLDR---FPGQP------VVVMPKLDG 116 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRA----IPTIPRVLSLNIPEIIEVRGEVY 192 +++ YE G + A RGDG +G+DV+ +RA +PT + P +EVRGE Sbjct: 117 LSLSLVYEGGALLRAVTRGDGTTGDDVTPLVRALADGVPT-----RVPAPGRVEVRGEAV 171 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 + ++ F A N+ A KP NPRNAA+G LR +P + R L F L +E A Sbjct: 172 MLRSTFTAYNE---AHPDKPLINPRNAAAGTLRAKDPATVAGRRLRFLAFELDTDAEAGA 228 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++ + +R LGF + +R A +++ R+ L YD+DG V ++ + Sbjct: 229 GVGADLEEGLRALGFTPAD-MRHAADAEAAQRVITGIETGRADLDYDLDGAVLRLADRRA 287 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 G R+ SPR ++ KFA ++ +T L+D+ +G+TG + PVA LEPV +GG +T A Sbjct: 288 YAAAGTRSNSPRGALAFKFAAEEKTTLLVDVVWDVGKTGKVVPVAHLEPVFVGGTTVTRA 347 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII-VNERHPDAQPFSF 430 TL N++ IK R + VGD VLV+RAG+VIP V ++ +R + + Sbjct: 348 TLANQEVIK-----------ARGVMVGDTVLVRRAGDVIPFVAGVLDAAKRTGEEREIVP 396 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP C + N + +L CT ++C+AQ + RL H+ SR A +I+ +G Sbjct: 397 PSTCPSCDQPLTEQGNSR--ELF----CT-NVSCAAQTVRRLIHWASRAAADIDAIGPVW 449 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F + A + P+D + L + Q ++ G+ S T + +SI R + L Sbjct: 450 IERFAE----AGLLEHPSDFYLLTKEQLLEFERV------GETSATRMIESIAASRAVGL 499 Query: 551 ERFIFSLGIRHVGAEIARSLAKY-YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R + + A L + + S + A L+ V +G +A Sbjct: 500 RRALIGFAVPMASEGTATRLCRAGFGSLEEVADAGEE----------RLVEVEDIGPKVA 549 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTL----- 658 ++ E R L++ S+ ++++ + + K +V TG + Sbjct: 550 ASLTEHLARLRPEL---TRLRQRGVSLDVRDEDLPPVVASDAPLAGKTVVITGAISDPRS 606 Query: 659 -QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQF 714 +K+ R Q + GA ++ +S TD++I G G+ K KA++LGV ++++ + Sbjct: 607 GEKVARPAFQRLCEKAGATTASSVSANTDMLITGAEVGAGKTAKAEKLGVAVVDQGEI 664 >gi|257484998|ref|ZP_05639039.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 572 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 146/404 (36%), Positives = 222/404 (54%), Gaps = 37/404 (9%) Query: 234 RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 R L F +GLG+TS A +L+ ++ G PV+ ++ AN + YY ++ R Sbjct: 11 RPLEFCCYGLGQTSAEIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRL 70 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 TL Y+IDG+V+KV+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG +T Sbjct: 71 TLSYEIDGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVT 130 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVARL+PV + G ++ NATLHN D + L + +GD V+++RAG+VIP+V Sbjct: 131 PVARLKPVKVAGVMVANATLHNMDEVARL-----------GLMIGDTVIIRRAGDVIPQV 179 Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQ 467 V ++ R +A+ P CP+C S V R + GK A +RC G LAC AQ Sbjct: 180 VQVVAERRPENARAVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQ 239 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527 + + H+VSR A +IEGLG + ++ + I PAD++ L+ Q I ++ Sbjct: 240 LKQAIIHYVSRRAMDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDL 289 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 GF ++S L +I R +L RFI++LGI VG E A+ LA+ S Q + + Sbjct: 290 EGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEV 349 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 + + +P VG +A I F+++ N ++ALL E Sbjct: 350 LTY----------LPDVGLEVAYEIHSFFEDEHNRNVIDALLGE 383 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + A + DWL + + + + Sbjct: 401 STTLEGLIDKLHIPSVGPGAAQKLADRF----------GTLEAIISADWLDMRQT--LPE 448 Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ + + A+EA LK+ G H ++ +E L V TG+L Sbjct: 449 KQAKSVRDFFDDSAHAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 504 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L L Sbjct: 505 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRL 564 Query: 719 QQYNTTL 725 + T+ Sbjct: 565 TELGVTV 571 >gi|154498647|ref|ZP_02037025.1| hypothetical protein BACCAP_02637 [Bacteroides capillosus ATCC 29799] gi|150272386|gb|EDM99580.1| hypothetical protein BACCAP_02637 [Bacteroides capillosus ATCC 29799] Length = 656 Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 207/722 (28%), Positives = 332/722 (45%), Gaps = 93/722 (12%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 Q + + L Q I D+ YY+Y PI+ D +YD L A+ + S P Sbjct: 2 QNLERMRELIQTIKEADEAYYKYDAPIMADLDYDRLYDELAALERETGTILSSS----PT 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ GE+ SL V HS P LS +K ++ D+ K++ L K+D Sbjct: 58 QRVSGEVLESLTAVRHSRPMLSADKCKSVADIHKYL------------GGHEAVLSWKLD 105 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + +RYE GK V A RGDG GEDV+ +R + +P V+ P +EVRGE IS Sbjct: 106 GLTLVLRYENGKLVQAITRGDGLQGEDVTHTVRIMKNVPLVIPCKEP--LEVRGEGVISW 163 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254 +F ALN + +PYA+PRN A+G +R+LN ++ R L+F L + + + Sbjct: 164 KEFHALNGTL----DEPYAHPRNLAAGSVRKLNAEEVRERGLSFMAFDL-ISDNLGGSTK 218 Query: 255 YEMLQKMRCLGFPV-----------NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 +E L+ + +GF VRQA F+ Y Y DGL+ Sbjct: 219 WETLRFLAQMGFTTVGYSILAAGASEEAVRQAMDFYQPKEY-----------AYPTDGLI 267 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 ++ ++ + + LG M + K+ + + T+ +++ RTG+++ A + V I Sbjct: 268 FEFNDLAYGRSLGATGHHENRMTAFKWPDTRYETKFRRLEVATTRTGMISLTAAFDDVVI 327 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + +A LHN D L + GD + V +A +IP++ + N+ Sbjct: 328 DGTTVNHAYLHNLDNFTRLA-----------LGPGDTISVYKANMIIPQIAE---NKTKS 373 Query: 424 DAQPFSFPSFCPICQSR-VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P P CP C S VVR + T +L + AC A+ + + HF S+ Sbjct: 374 GGCPL--PDVCPCCGSTLVVRQSSGGTRQLYCENE-----ACPARLVRKFVHFCSKTRME 426 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I+GL +Q L F + ++ D++ L+R ++ +I GFG+ S L +++ Sbjct: 427 IKGLDEQTLTTFVQHG----WVKNYGDLYELERHKE----EILKTPGFGEKSFARLQNAV 478 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLA-KYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 ++RR +L +FI +LGI VG R L K+ S+ F + I D ++ Sbjct: 479 DERRTCTLNQFIAALGIPEVGRHAGRILNRKFGGSWDAFERAIL--------DQFDFTQL 530 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTG 656 G ++ I +Y + L ++ E+ E +N K +V TG Sbjct: 531 EDFGQVMNDNIYCWYSDEEEAKLWRPALNHIT---FLKEETTMPEAQNNPFAGKTVVATG 587 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L+ R Q + LGA ++ +S+KTD +IVG+N GSKL KAQ LGV + E+QFL Sbjct: 588 KLENYTRDGIQMKLLSLGARPASSVSKKTDYLIVGENAGSKLTKAQTLGVTTLTEQQFLQ 647 Query: 717 LL 718 +L Sbjct: 648 ML 649 >gi|188576356|ref|YP_001913285.1| DNA ligase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520808|gb|ACD58753.1| DNA ligase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 590 Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 177/608 (29%), Positives = 290/608 (47%), Gaps = 163/608 (26%) Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ML ++R GFPV++ V G+++YY + R LP+DIDG+VYK+D+ + Q+++G Sbjct: 1 MLAQLRAWGFPVSSLVEVVQGSDGLLAYYQRIGEARDGLPFDIDGVVYKLDDLAGQREMG 60 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW ++HKF ++ ST + I+IQIGRTG TPVARL+PV++ G ++TNATLHN Sbjct: 61 FVSRAPRWALAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNA 120 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I LD +RVGD V+V+RAG+VIP+V ++ ++RHP QP+ P+ CP+ Sbjct: 121 DQIARLD-----------VRVGDTVIVRRAGDVIPEVAAVVADQRHPATQPWQMPTQCPV 169 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE------------ 484 C S +VR+ G+ A RC+G L C AQ+ E +HFVSR A +++ Sbjct: 170 CGSEIVRE----EGQ--AVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVD 223 Query: 485 -GLGKQQLDFFFKSEDPAFSIRI-----PADIFTLQRRQQTST---TKIE-NILGFG-DV 533 G+ + D + + D +R+ F + R+ ++ ++E ++G G D+ Sbjct: 224 SGVVQGVADLYLLTVDQLLQLRMISTAESPHAFLREAREHLASGAYAQLEATLVGIGVDL 283 Query: 534 S--------------------------------VTNLYDSINKRRNISLERFIFSLGI-- 559 + NL ++I R+ +LERF+F+LGI Sbjct: 284 AGEREVPQTWQADLLRAGLPTFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEH 343 Query: 560 -------------------RH-----------VGAEIARSLAKYYLSYQNFAQEINNIIA 589 RH +G E+ARSL ++ N + I++++A Sbjct: 344 VGESTAKALSAWFGDLDLIRHLPWPLFKRVPDIGGEVARSLGHFFDQPGN-QKAIDHLLA 402 Query: 590 HNN------------------DDWLSLIRVPLVGDI------------------------ 607 + L + +P V I Sbjct: 403 RKVRIGDTHPPSPKLRGELRLANLLEDLEIPKVTPIRAAQIATAFGSIDALRNGGPEPLV 462 Query: 608 -------IAQAIVEFYQNPRN-ICAVEA-----LLKEVSPSIGRHEKNVSSEIENKKLVF 654 +A+++ + P N AV+A L + P G + + ++ + +V Sbjct: 463 EAGVPQSVAESLATWLLVPANDTLAVKAQKKLSALLAMMPEAGEEK---TGPLDGQTVVI 519 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL + R A++ + LGA V+ +S+KT ++ G+ GSKL+KAQ LGV+I +E + Sbjct: 520 TGTLAALTRDAAKQRLEALGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARL 579 Query: 715 LFLLQQYN 722 L L ++ Sbjct: 580 LAFLGEHG 587 >gi|167766753|ref|ZP_02438806.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1] gi|167711507|gb|EDS22086.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1] Length = 651 Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 210/702 (29%), Positives = 342/702 (48%), Gaps = 85/702 (12%) Query: 34 CYYQYSKPIILDSEYD-------ALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 YYQ +K ++ + EYD L+++ + + N P +G E+ +L Sbjct: 20 AYYQQNKEVMSNLEYDKMYDELLELEKKTNTVL-----------SNSPTIHVGYELMTAL 68 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 K H P LSL+K + L ++ N L K+DG I + YE G Sbjct: 69 EKEAHPSPMLSLDKTKEPDQLATWL------------NGQEGILSWKLDGLTIVLTYEHG 116 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 + + A RG+G GE V+ R +PR ++ +I RGE I +DF +N+E+ Sbjct: 117 ELLKAVTRGNGEVGEVVTNNARVFENVPRHIAYQGTLVI--RGEAIIPYSDFYKMNEEIE 174 Query: 207 AVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM-LQKMRC 263 V + Y NPRN SG +R+LN +IT R+++F+ + + +E L Sbjct: 175 DVDSQ-YKNPRNLCSGSVRQLN-NEITAKRHVHFYAFSVSDVEGMDFDNSFEKKLDWAAS 232 Query: 264 LGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 LGF V +R +T G + +++ K + LP D GLV D + K LG A+ P Sbjct: 233 LGFDVVEHIRVTEDTIRGEIEKFSK-KIEQFDLPSD--GLVLVYDNLAYGKSLGRTAKFP 289 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 R I+ K+A++ A T L +I+ RTG++ PVA EPV + G ++ A+LHN ++ L Sbjct: 290 RDSIAFKWADETAETTLTEIEWSPSRTGLINPVAIFEPVELEGTTVSRASLHNISVMEEL 349 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV- 441 + +GD ++V +A +IP++ E + P CP C Sbjct: 350 -----------QLGIGDEIVVYKANMIIPQLA-----ENKTKSGNIEIPHTCPACGGETK 393 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + D N + CT CSA++++ HFVSRDA N++GL + L K D Sbjct: 394 IEDENG-----IRTLVCTNEF-CSAKKIKSFSHFVSRDAMNVDGLSEATLQ---KMIDVG 444 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 I D+FTL+ ++ +I + GFG+ S NL ++IN + +L FI+SLGI + Sbjct: 445 LLNEI-YDLFTLKDHKE----EILELEGFGEKSYQNLINAINDSKQPALANFIYSLGIPN 499 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG A+ + K+ F ++ N I + +D+ I + +G +IA+A+V ++ P N Sbjct: 500 VGLSNAKLICKH------FKEDFNAIREADAEDF---IAIDQIGPMIAEAMVSYFHTPHN 550 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAI 680 +E LL+ V + E +E K V TG+L R + +E + Q+G V+ Sbjct: 551 QKILEQLLQYVQFE-KKEESKTEQILEGKTFVVTGSLDHFDNRKQLKEEIEQMGGKVTGS 609 Query: 681 LSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +S+KTD +I D + SK +KA +L + I++EE FL L+++ Sbjct: 610 VSKKTDYLINNDKMSQSSKNKKAMELNIPILSEEDFLDLIRR 651 >gi|294155884|ref|YP_003560268.1| DNA ligase (NAD(+)) [Mycoplasma crocodyli MP145] gi|291600422|gb|ADE19918.1| DNA ligase (NAD(+)) [Mycoplasma crocodyli MP145] Length = 657 Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 204/697 (29%), Positives = 345/697 (49%), Gaps = 67/697 (9%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 +I +++ YY +P + D+EYDAL + I P + + P+ IGG + Sbjct: 15 KIKQYNNEYYNLDQPSVSDAEYDALYKELLEIEKQNPKIINQDSPSQI---IGGFASSKF 71 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 K TH LSL+K + +++ KF I++ K DN FF LEPK+DG I++ YE G Sbjct: 72 SKYTHQKLMLSLDKATHFDEITKFYNDIFKVI--KTDNKGFF-LEPKVDGLSISLHYENG 128 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 A RGDG GEDVS + I + ++ P IE+RGE+Y+SK +F LN ++ Sbjct: 129 ILQRAVTRGDGLVGEDVSENVLQIKEVKHKIAYKKP--IEIRGEIYLSKENFNKLNKKIE 186 Query: 207 AVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 G K +ANPRNAASG LR+L+ + R L ++ L Q + + + LG Sbjct: 187 DQGLKSFANPRNAASGTLRQLDKNIVRERNLGIVLYELVDPLVHKITSQDQSISFINQLG 246 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 FP + I++Y E I++ L YD DGLV K ++ K LG ++ P++ Sbjct: 247 FPTQKNNKLLYELDDILNYIEEFGEIKNNLDYDCDGLVIKYNDIEQWKLLGFTSKFPKYA 306 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I++K+ ++A TR+ I I GRTG + +A +EPV + ++++ ATLHN +YI+ L Sbjct: 307 IAYKYQVEEAITRINKISISTGRTGKINYLAHVEPVELNQSIVSKATLHNYNYIEEL--- 363 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF--CPICQSRVVR 443 ++ +GD V++ +AGE+IPK V E FP C C+S++ Sbjct: 364 --------NLNIGDDVVIIKAGEIIPK-----VRELKQKKSIGVFPKLINCLSCKSKLEY 410 Query: 444 -DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 D N C C + + L +F S+ +I+G+G + + +++ Sbjct: 411 IDDN-------LEQYCLNK-NCQEKIINSLIYFASKPCLDIKGMGDKVVKILYEN---GL 459 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 + I D F L ++ K+ + F + V NL ++I + L + I +LG++++ Sbjct: 460 VLEI-KDFFELHNKRD----KMLQLPSFKEKKVDNLINAIETIKKAQLHKVIIALGMKNI 514 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN- 621 G ++ ++ ++++++ +N D+ L + +G +I EF +N Sbjct: 515 GTRSSKLISTK-------INKLSDLLTYNIDE---LENIDDIGPKSIASIKEFLSEDKNK 564 Query: 622 --ICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 I ++ +V+ SIG N+S I TGTL K R + + + G Sbjct: 565 ELITFLDNYFIQVNDSSIGNKLVNLSFSI-------TGTLLK-PRDYFVDLIEKNGGQFH 616 Query: 679 AILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQF 714 + + KT+ +IVG+NPGS K+ KA+ LG +++ ++F Sbjct: 617 KLPTSKTNYLIVGENPGSAKINKAKILGTQVITIDEF 653 >gi|88855225|ref|ZP_01129890.1| DNA ligase [marine actinobacterium PHSC20C1] gi|88815753|gb|EAR25610.1| DNA ligase [marine actinobacterium PHSC20C1] Length = 775 Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 161/493 (32%), Positives = 258/493 (52%), Gaps = 41/493 (8%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++ AR E+ +L I D YY+ + ++ D+EYD L +R + + P+L +S+D Sbjct: 25 ALAAARDEVGTLSTRILELRDAYYERDEVLVDDAEYDELIQRLERLEREHPEL-QSQD-- 81 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG+ V H+ LSL+ +++IE+ + ++ Q+ ++ F E Sbjct: 82 SPTLRVGGKAAALFDPVEHAERMLSLDNVFSIEEFADWAAKV----QRDSARAVDFLCEL 137 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 KIDG I +RY G V AA RGDG GEDV+ + + IP R+ P ++EVRGEV Sbjct: 138 KIDGLAINLRYIDGVLVSAATRGDGRVGEDVTENVVRVDGIPQRLAGTGHPPMVEVRGEV 197 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLN----------FFVH 241 +I F LN E +G K +ANPRNAA+G LR+ + L+ VH Sbjct: 198 FIPLELFRELNAEQTRIGEKVFANPRNAAAGSLRQKSEGKSDEKLSHMRRRLASLRMLVH 257 Query: 242 GLG-----KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 G+G + + + Q ++ + G P + R ++ + R ++ Sbjct: 258 GIGAWDGARDGQDPIRSQSDVYGVLATWGLPTSTHFRVVDSADKAADFIRYFGEHRDSVE 317 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 ++IDG+V KVDE +L +LG +R+PRW I++K+ +Q +T+LLDI + IGRTG TP A Sbjct: 318 HEIDGIVIKVDELALHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVGIGRTGRATPYA 377 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 +EP + G+++ ATLHN+D +K R G + +GD V++++AG+VIP+++ Sbjct: 378 VMEPALVAGSVVRQATLHNQDVVK---------RKG--VLIGDTVVLRKAGDVIPEILGP 426 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHF 475 + R F P+ CP C + L P K G + RC +C AQ R++H Sbjct: 427 VEELRDGSEYAFVMPTLCPECGT----PLRPMKEGDI--DLRCPNARSCPAQVRGRIEHA 480 Query: 476 VSRDAFNIEGLGK 488 SR +IE LG+ Sbjct: 481 GSRGGLDIEVLGE 493 Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 30/233 (12%) Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 DPAF A++F+ S+ I+ I NL ++ K L R + SL Sbjct: 565 DPAFDPN--AELFSGSADAVPSSNAIKLI--------ANLQEAKTK----PLWRLLVSLS 610 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 IRHVG AR+LA Y+ S + L V VG IIA +++E+++ Sbjct: 611 IRHVGPVAARALADYFGSLEAIRTAKRE----------ELAAVDGVGQIIADSVIEWFEV 660 Query: 619 PRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKL-----VFTGTLQKIQRHKAQEYVTQ 672 + V+ + V S H +++ ++ L V TG+L R AQE + Sbjct: 661 DWHQEIVQRWAEAGVQWSTPGHPGPGAAQSKDGLLAGLTIVATGSLDGFTREGAQEAIIA 720 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 GA ++ +S+KTD + G GSKL KA++LG+ I++ QF LL++ + L Sbjct: 721 AGAKAASSVSKKTDYVAAGPGAGSKLTKAEELGITILDAAQFARLLEEGPSAL 773 >gi|302562478|ref|ZP_07314820.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000] gi|302480096|gb|EFL43189.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000] Length = 533 Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 176/557 (31%), Positives = 270/557 (48%), Gaps = 58/557 (10%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY + D YD L R PD P P K+ G V H++ Sbjct: 21 AYYGGGTSALDDDAYDRLVRGIADWEAEHPDAIL---PGSPTGKVAG--GAVEGDVPHTV 75 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL+ +++ E+ + + R + ++ F++ PK+DG + RY G+ Sbjct: 76 PMLSLDNVFSAEEFTAWTASLAR---RIGHDAARFSVGPKLDGLAVAARYSDGRLTRLIT 132 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG +GEDVS I + +P L P +EVRGEV ++ F N+ A G +P+ Sbjct: 133 RGDGTAGEDVSHAIGTVEGLPE--KLEEPVTVEVRGEVLMTTAQFEHANEVRTAHGGQPF 190 Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGL----GKTSEIFAK----GQYEMLQKMRCLG 265 ANPRNAA+G LR + T + FF +GL G + + E++ R LG Sbjct: 191 ANPRNAAAGTLRARDRV-YTVPMTFFGYGLLPLPGTDPALAGRLDDLPHSELMALARDLG 249 Query: 266 FPVNNGVRQA------NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 V+ R A T +++ E+ + R+ LP+ IDG+V K D Q+ G + Sbjct: 250 --VHTSARTAVPDVVAGTVEEVLARVKEIAAARAELPFGIDGIVIKADLAEEQRAAGSGS 307 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 R+PRW I++K + TRLL+++ +GRTGI+ P LEPV I G+ IT ATLHN Sbjct: 308 RAPRWAIAYKLPAVEKITRLLEVEWNVGRTGIIAPRGVLEPVVIDGSTITYATLHN---- 363 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 + R RD+R+GD V+V RAG+VIP++ + + R + QP FP+ CP C S Sbjct: 364 -----PADITR--RDLRLGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIVFPAQCPRCGS 416 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 + TG+ RC G C + L + RD +IEGLG ++ Sbjct: 417 DI------DTGE--ERWRCAQGRNC--HLVASLAYAAGRDQLDIEGLGATRVVQLVD--- 463 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 A + AD+F L+R Q + ++ G+ S NL ++ K + L R + +LG+ Sbjct: 464 -AGLVADLADLFALRREQLLALERM------GETSTDNLLAALAKAKEQPLSRVLCALGV 516 Query: 560 RHVGAEIARSLAKYYLS 576 R G ++R +A+Y+ + Sbjct: 517 RGTGRSMSRRIARYFAT 533 >gi|80159718|ref|YP_398462.1| putative NAD-dependent DNA ligase [Clostridium phage c-st] gi|78675308|dbj|BAE47730.1| putative NAD-dependent DNA ligase [Clostridium phage c-st] Length = 649 Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 203/717 (28%), Positives = 357/717 (49%), Gaps = 79/717 (11%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYD----ALKRRCDAIAHAFPDLARSE 69 +E + + L +E++ + YY K ++ D E+D LK+ F Sbjct: 1 MENQIQRVKKLIKELNDASNKYYNSDKTVMTDKEWDDKYEELKQLEQETGVVFS------ 54 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 N P K+G E+ L KV H+IP SLEK +I +L KFI Sbjct: 55 --NSPTQKVGYEVKSKLDKVVHNIPLKSLEKTKSINNLEKFI------------RGKTII 100 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 + K DG + YE G+ + + RG+G GED++ ++ IP L ++ +++ G Sbjct: 101 IMDKGDGLTCELIYENGELIQGSTRGNGTIGEDITHNVKTFKNIP--LQIDFKGYLKLSG 158 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E I DF +N ++ + Y+N RN +G +R+L+ + R + F+ L + Sbjct: 159 ESVILDRDFELINSKLDEADK--YSNSRNLVAGSVRQLDSKICSNRNVRFYAFNLLECEN 216 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVR--QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + K + + + + LGF + + GI+S M+ + IDGLV+ Sbjct: 217 VDFKTKEDQFKFLNQLGFEIIEYTKCDPKQDLEGIIS---NMQKSAYERGFPIDGLVFTY 273 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ LG+ P I++KF +++ T+ + + Q+ RTG++ PVA+ EPV I G+ Sbjct: 274 NDIKYANSLGDTLHHPLHSIAYKFYDEEYETKYITTEWQVSRTGMINPVAKFEPVEIEGS 333 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +I ATLHN DY + L + GD + V +A +VIPKV+ N+ +A+ Sbjct: 334 VIERATLHNLDYFQDL-----------KLGQGDTIKVIKANQVIPKVMS---NKTMSNAE 379 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C + L KT +++ CT L CSA+ + R+ H+ SR+A NI+GL Sbjct: 380 V--IPIECPVCGGKTEEKL-LKTARVLI---CT-NLECSAKHISRITHYCSRNAMNIDGL 432 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ ++ F ++ DI+ L++ ++ +I NI GFG S N+ ++I K + Sbjct: 433 SEKTIEKFVN----LGYLKDIDDIYNLEQYKE----EIINIDGFGLKSYNNMIEAIEKSK 484 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + LE FIF+LGI++VG A+ L K + S I+ I+ N ++ S + +GD Sbjct: 485 HCKLENFIFALGIQNVGLGTAKLLVKKFKS-------IDKIMNCNLEEIYS---IDGIGD 534 Query: 607 IIAQAIVEFYQ-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RH 664 ++ I +++ N +I V LLK + ++N S++++ K V TG + + R+ Sbjct: 535 VVGNEIYKYFVINQDSINLVSKLLKYI--DFEEVKENNSNKLQGKTFVITGDVHIFKNRN 592 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + V ++G V+ +S+KT+ +I D + SK +KA+ L + I+ EE+FL +++ Sbjct: 593 EIKAKVEEMGGKVTGSVSKKTNYLINNDSESASSKNKKAKDLNIPIITEEEFLGMIK 649 >gi|297571016|ref|YP_003696790.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595] gi|296931363|gb|ADH92171.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595] Length = 843 Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 166/523 (31%), Positives = 258/523 (49%), Gaps = 98/523 (18%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE-MNLSLFKVTH 91 + YY +++D+ YDAL R A+ FP L P+ P K+G + + L VTH Sbjct: 28 ETYYSTGDQVMVDATYDALMRELRALEEEFPQLW---SPDSPSTKVGAKPVRGGLPSVTH 84 Query: 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 SL+ +++ ++L ++ T + K+ + + FT E KIDG + + Y G A Sbjct: 85 ISRMYSLQDVFSRDELAEWFTGV----SKELPDGVSFTTEVKIDGLALNLTYRNGWLERA 140 Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFL----------- 199 A RGDG +GEDV+ +R I +IP L + IPE++E+RGEV+ F Sbjct: 141 ATRGDGVTGEDVTRNVRMIASIPDQLRGDRIPELVEIRGEVFFPVAAFTQYNASVDARNA 200 Query: 200 ----------ALNDEMIAVGR---------------------------KPYANPRNAASG 222 A N E+ A R KP+ NPRNAASG Sbjct: 201 QIDARNERISAANREIAAQNRAIRAANASLPSDQQVAEIPSKRREAHVKPFVNPRNAASG 260 Query: 223 ILRRLNPTDIT-RYLNFFVHGLG---------KTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 +R+ + + R L+F HGLG + S +G Y M + G PV+N Sbjct: 261 TMRQEDTGSVALRSLDFLAHGLGALDGADDVLRASLSSQEGVYSMFIEW---GLPVSNVT 317 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 ++ I + + ++ R++LP++ DG+ K+D+ + Q++LG R PRW +++KF Sbjct: 318 ETHSSLAEINDFLDRFQNARTSLPFEFDGVAIKIDDRATQERLGYTTRVPRWAVAYKFPP 377 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + TRLLDI +Q+GRTG +TP A +EPV + G+ ++ ATLHN +V R G Sbjct: 378 TEVQTRLLDIRVQVGRTGRVTPYAVMEPVFVDGSTVSQATLHN---------PTEVARKG 428 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR------DLN 446 +R+GD V++++AG++IP+VV I +ER F P+ CP C + + DL Sbjct: 429 --VRIGDVVVIRKAGDIIPEVVGPIESERDGSEVEFVMPTHCPDCGAPIAAISEGDIDL- 485 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 RCT +C AQ +R+ H SR A ++E LG + Sbjct: 486 ----------RCTNQKSCPAQLTQRVVHIGSRGALDVEALGDE 518 Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 15/189 (7%) Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNIIAHNN 592 ++ + D + ++ L R + +L IRHVG +++LA + S + + +I A Sbjct: 662 TLLKILDELEGAKHKDLWRKLVALNIRHVGPVASQALADTFGSLDAMREASLEDISA--- 718 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN--VSSEIENK 650 V VG IIA + + ++ + VE ++ + + E + V + Sbjct: 719 --------VEGVGPIIASSFLAWFGEEWHRQIVE-RWQDAGVTFKKEESDADVPQTLAGL 769 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+LQ R +E + G + +S+KT++++VG+N GSK KA++LG++I+N Sbjct: 770 TIVATGSLQHFTRDGIKETIAAHGGKATGSVSKKTNLVVVGENAGSKATKAEELGIRILN 829 Query: 711 EEQFLFLLQ 719 E QF LL+ Sbjct: 830 EAQFQQLLE 838 >gi|293363574|ref|ZP_06610330.1| DNA ligase (NAD(+)) [Mycoplasma alligatoris A21JP2] gi|292552923|gb|EFF41677.1| DNA ligase (NAD(+)) [Mycoplasma alligatoris A21JP2] Length = 660 Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 195/686 (28%), Positives = 338/686 (49%), Gaps = 59/686 (8%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + D YD + I +P+ N P IGG + K H+ P Sbjct: 23 YYNLDTPSVTDEVYDQEYQELLEIESMYPEAILE---NSPSQIIGGFASNKFSKYKHNKP 79 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL K ++ KF I++ D N FF LEPK+DG I++ Y GK V A R Sbjct: 80 MLSLNKANINSEIEKFYQDIFKVVT--DQNKGFF-LEPKVDGLSISLHYNNGKLVRAVTR 136 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GEDV+ I I ++ L ++ E IE+RGEVY+SK +F LN + +K +A Sbjct: 137 GDGVFGEDVTENILQIKSVK--LKIDFLEEIEIRGEVYLSKKNFEKLNKTFLENDQKLFA 194 Query: 215 NPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+ + R L+ ++ + + Q + ++ ++ LG + Sbjct: 195 NPRNAAAGTLRQLDKKIVKQRNLDVVLYEIVQPENYNISTQEDAIKFIKNLGLNTQKNNQ 254 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 I+ N+ +++++TL Y+ DGLV K ++F+ LG ++ P++ I++K+ + Sbjct: 255 LLFELSDILKAVNDFETMKNTLEYECDGLVIKYNDFTKWNLLGFTSKFPKYAIAYKYKAE 314 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 QA T + ID+ +GRTG + VA +EPV++ + ++ ATLHN DYI+ L Sbjct: 315 QAITTIRQIDVSVGRTGKINYVANVEPVSLNQSTVSKATLHNYDYIRDL----------- 363 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF--CPICQSRVVRDLNPKTGK 451 ++ + D V++ +AGE+IPKV+ + H SF CP C+S V+ ++ + Sbjct: 364 NLNINDEVVIIKAGEIIPKVISL-----HKKNSLNSFEKVLNCPSCKS-VLETIDGNVDQ 417 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 C L C + + + +F S+ +I GLG + + +++ I+ DI+ Sbjct: 418 Y-----CL-NLNCEEKIINSIIYFASKPCLDINGLGDKIVKILYENN----IIKNIQDIY 467 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 L + + +I + F D + NL S+ + + S+ + + SLGI+++GA ++ +A Sbjct: 468 LLNNKVE----EIAKLRSFKDKKIENLLTSVEQSKGASISKVLSSLGIKNIGARASKLIA 523 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 K ++ +L+L + + DI +++ N E ++ Sbjct: 524 KKIDKLEDLY-------------YLNLNDLEDIADIGPKSVESIKLYLENESNKELIMFL 570 Query: 632 VSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII 689 + H+K ++E + L F TG L+ +R+ + Q G + +++T +I Sbjct: 571 DNIFTYAHDKKANNEGKLNLLSFSITGKLEH-ERNYYISAIEQNGGEFHTVPTKQTSYLI 629 Query: 690 VGDNPG-SKLEKAQQLGVKIMNEEQF 714 VG N G SKL KA + G K++ ++F Sbjct: 630 VGLNAGDSKLNKALKNGTKLLTLKEF 655 >gi|227498227|ref|ZP_03928396.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434] gi|226832370|gb|EEH64753.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434] Length = 827 Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 168/519 (32%), Positives = 261/519 (50%), Gaps = 76/519 (14%) Query: 15 EQARKELSSLEQEISYHDDCYYQY--SKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++AR+ L + + YY ++ D+ YDAL R + + A+P L P+ Sbjct: 28 QEARRRWEELAELVERARAAYYDALDAESTTSDAAYDALYRELEDLEAAWPQL---RVPH 84 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +GG + VTH+ SL+ ++++E+++++ R+ D S+ T E Sbjct: 85 SPTRSVGGGRAQAFSPVTHAERMYSLQDVFSLEEVQEWAERVCADLGVAD-ASLPMTAEV 143 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191 KIDG + + Y G AA RGDG +GEDV+A +R I ++P LS + +P +IEVRGEV Sbjct: 144 KIDGLAVALTYTDGVLTRAATRGDGTTGEDVTANVRTIASVPHRLSGDQVPSLIEVRGEV 203 Query: 192 YISKNDFLALNDE----------------------------MIAVGRKPYANPRNAASGI 223 Y F N E M+ V +ANPRNAA+G Sbjct: 204 YFPVEAFARFNRERQEDNARREARNRALEEQGGGKRVRKEAMLQV----FANPRNAAAGS 259 Query: 224 LRRLNPT-DITRYLNFFVHGLGKTS----EIFAKGQYEMLQKMRCLGFPVNNGVRQANTF 278 LR+ +P +R L F HG+G + E Q+E + + G PV+ + Sbjct: 260 LRQKDPAITASRPLAFIAHGIGAYTPAPGEQLPALQHEWYELLAGWGLPVS-------PY 312 Query: 279 HGIV-------SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 + +V +Y R L ++IDG+V+K+D Q +LG +R PRW ++K+ Sbjct: 313 NALVVGRAEREAYIERYAEHRHDLIHEIDGIVFKIDARDQQGRLGYTSRVPRWATAYKYP 372 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ TRLLDID+Q+GRTG +TP +EPV + G+ + ATLHN + +V R Sbjct: 373 PEEVHTRLLDIDVQVGRTGRVTPFGIMEPVLVAGSTVARATLHNAE---------EVTRK 423 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP-KTG 450 G +R+GD V++++AG+VIP++V +V R + F P+ CP C + L P K G Sbjct: 424 G--VRIGDLVVLRKAGDVIPEIVGPVVEARDGSERVFVMPAACPSCGT----PLAPAKEG 477 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 + RC +C AQ ER+ H SR A ++EGLG + Sbjct: 478 DV--DLRCPNTRSCPAQVTERVAHVGSRGALDVEGLGDE 514 Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 18/191 (9%) Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 + T + + + L R + +L +RHVG AR+LA + S + Q + Sbjct: 641 NATAVLAQLEAAKAQPLWRVLVALSVRHVGPTAARALAARFGSLEALRQASLD------- 693 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IEN 649 L +V VG IA A E+ + + +L + + R + V++ + Sbjct: 694 ---ELSQVDGVGPTIAAAWQEWLE----VDWHREILDRWAAAGVRTQDEVTTTAPQTLAG 746 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 +V TGTL+ R A+E + G + +S++T ++VG N GSK KA++LGV ++ Sbjct: 747 LSVVVTGTLEHFTREGAKEAIVARGGKAAGSVSKRTSYVVVGANAGSKETKARELGVPVL 806 Query: 710 NEEQFLFLLQQ 720 +EE F LL+ Sbjct: 807 DEEGFRALLEH 817 >gi|254233094|ref|ZP_04926421.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis C] gi|124602153|gb|EAY61163.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis C] Length = 495 Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 164/518 (31%), Positives = 262/518 (50%), Gaps = 37/518 (7%) Query: 205 MIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 ++ G+ P+ANPRN+A+G LR+ +P R L HGLG ++ +R Sbjct: 3 LVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPATLHQAYLALRA 62 Query: 264 LGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 G PV+ A G+ + Y+ E R + ++IDG+V KVDE +LQ++LG +R Sbjct: 63 WGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEVALQRRLGSTSR 119 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + ATLHN IK Sbjct: 120 APRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIK 179 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 R G + +GD V++++AG+VIP+V+ +V R + F P+ CP C S Sbjct: 180 ---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSP 228 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 + + K G A RC C Q ER+ H SR+ +IE LG + +++ Sbjct: 229 LAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAK-- 281 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 I ++F L R T G + L +++K + L R + +L IR Sbjct: 282 --VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIR 339 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 HVG AR+LA + S ++ I A + D L V VG IA A+ E++ Sbjct: 340 HVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGPTIAAAVTEWFAVDW 389 Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 + V+ + +++V + +V TG+L R A+E + G + Sbjct: 390 HREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGS 449 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL Sbjct: 450 VSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 487 >gi|46204823|ref|ZP_00049431.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Magnetospirillum magnetotacticum MS-1] Length = 277 Score = 253 bits (646), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 126/276 (45%), Positives = 180/276 (65%), Gaps = 2/276 (0%) Query: 96 LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRG 155 LSL + E++ +F+ RI RF + D I FT EPKIDG + +RYE GK V AA RG Sbjct: 2 LSLGNAFADEEVEEFVARIRRFLNLQADAPIAFTAEPKIDGLSLFLRYEAGKLVTAATRG 61 Query: 156 DGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 DG GE+V+A + IP LS +IPE++EVRGEVY+S DF A+N A G+ +A Sbjct: 62 DGEVGENVTANALTVKDIPETLSGADIPEVLEVRGEVYLSHADFAAINARQEAAGKPLFA 121 Query: 215 NPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+P +R L FF + G+ SE F + Q +L + G PVN + Sbjct: 122 NPRNAAAGSLRQLDPAITASRPLRFFAYAWGEVSEPFTQTQSAVLDRFGGWGLPVNPQTK 181 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 + ++++Y +++ R+ L YDIDG+VYKVD+ Q++LG +R+PRW ++HKFA + Sbjct: 182 LCRSAEEMIAHYRAIEAERADLGYDIDGVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQ 241 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 +A T LL IDI +GRTG L P+ARL+PV +GG +++ Sbjct: 242 EALTELLAIDINVGRTGSLNPLARLKPVTVGGVVVS 277 >gi|71894578|ref|YP_278686.1| DNA ligase [Mycoplasma synoviae 53] gi|123734274|sp|Q4A5J6|DNLJ_MYCS5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|71851366|gb|AAZ43975.1| DNA ligase [Mycoplasma synoviae 53] Length = 697 Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 208/747 (27%), Positives = 358/747 (47%), Gaps = 87/747 (11%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S +Q ++++ SL + + + YY P + D YD+L + +P L + Sbjct: 1 MSNQQIKEKIISLNNYLKHLNHLYYDLDAPEVDDKTYDSLYNELLELEAKYPSLVLED-- 58 Query: 72 NGPLNKIGGEMNLSLFKVT-HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + KI G + FK T H+ LSL+K + ++ F F Q K+ + F+L Sbjct: 59 --SVTKIIGAFVSNKFKKTKHNKEMLSLDKAYKESEIFSFYEN---FTQYKNLENFGFSL 113 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 EPKIDG I+I Y+ GKF+ A RGDG +GEDVS + I +P+ +S P +EVRGE Sbjct: 114 EPKIDGLSISIHYDNGKFIKAITRGDGTTGEDVSENVFQIRDVPKQISYLKP--LEVRGE 171 Query: 191 VYISKNDFLALNDE----------------MIAVGRKP------------YANPRNAASG 222 +Y+ K+ + +LN++ M A+ + + N RNAA+G Sbjct: 172 IYMKKSTWKSLNEDIKNQYFQTNIEKIFSYMQALPKSKSWSNLKIKTPIFFKNARNAAAG 231 Query: 223 ILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281 LR+ +P + +R L+ + + E K Q E+L ++ F VN + A I Sbjct: 232 TLRQKDPKIVKSRNLSSLFYEIVSPLEHNLKTQMEVLAFLKEQNFEVNEFQKLAKNDQEI 291 Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341 + NE I++ +D DG V K + +Q+G ++ P+W I++K+ ++A+T++L+ Sbjct: 292 MFEINEFSKIKNNFEFDCDGFVIKFNLIDKWEQIGFTSKFPKWAIAYKYMLEEANTKILN 351 Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401 I Q+GRTG +T +A+ PV + + NATLHN ++IK +I +GD + Sbjct: 352 IVAQVGRTGNITYIAQFMPVELNNTTVQNATLHNYEFIK-----------KNNINIGDEI 400 Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461 + ++GE+IPKV+ I +++ D+ F CP C S L G + R Sbjct: 401 TIIKSGEIIPKVISIY--KKNTDS-VFEKVLNCPSCNSL----LEIPEGYVDQFCRNEN- 452 Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C ++++ L FVS++ NI L Q + F+ P +R DIF L+ Sbjct: 453 --CDEKKIQMLTFFVSKNCLNITNLSVQNIRIFYNH--PVIQMREIQDIFLLKNH----V 504 Query: 522 TKIENILGFGDVS-----VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 +I+ I F S + N+ SI K ++ L + +LGI+ +G IA +L Sbjct: 505 DEIKKIKFFAGKSQENKKINNILQSIEKAKDAYLRNVLAALGIKGIG-NIAANL------ 557 Query: 577 YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 +I + NN L+ + G+ + + EF + +N + L+K + ++ Sbjct: 558 ---LTNKITKLSDLNNLTDEDLLSIDTFGEKSIENLKEFLSSEKN----QDLIKFLDENL 610 Query: 637 GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 SS++ N TG+L I R + ++ + G + S +S+ T +I S Sbjct: 611 NYLNSKKSSKLNNLNFAITGSLS-ISRDEFKKIILDNGGIFSNSVSKNTSYLISNSKENS 669 Query: 697 -KLEKAQQLGVKIMNEEQFLFLLQQYN 722 K++KA + +K++ EE+F LL++ N Sbjct: 670 TKIKKALENNIKVITEEEFHNLLKEEN 696 >gi|271965050|ref|YP_003339246.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021] gi|270508225|gb|ACZ86503.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021] Length = 696 Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 204/716 (28%), Positives = 324/716 (45%), Gaps = 79/716 (11%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY + D YD L R A PD P P K+ G + V H++P Sbjct: 30 YYGDGTSTLDDDAYDRLVRGIQAYEAEHPDEVL---PTSPTGKVAG--GAVVGDVPHTVP 84 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ ++ L + + R + +++EPK+DG I RY G+ V R Sbjct: 85 MLSLDNVFGAGQLADWAASLERRLGRPVTE---WSVEPKLDGLAIAARYRGGRLVQLVTR 141 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG +GEDVS I I +P L+ P +E+RGEV ++ + F + A +A Sbjct: 142 GDGTAGEDVSHAIGTIVGLPARLAE--PVTVELRGEVMMTASQFEDACVKRQAHDGTTFA 199 Query: 215 NPRNAASGILRRLNPTDITRYLNFFVHGL----GKTSEIFAKGQYEMLQKMRCLGFPVNN 270 NPR+AA+G LR + + L FF +G TSE Q L + + Sbjct: 200 NPRSAAAGTLRAQDRPYVCE-LTFFGYGALPYPDDTSEQAV--QLRELPHSEVMTWVAGQ 256 Query: 271 GVRQ----------ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 GV+ A T I ++ + R+ LP+ IDG+V K D + Q Q G +R Sbjct: 257 GVQTPAVTDVGGIVATTLEQIQERVEQIAAKRTELPFGIDGIVIKCDLAADQAQAGFSSR 316 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 +PRW I++K + T+LL ++ GR+GI+ P A LEPV + G+++T ATLHN Sbjct: 317 APRWAIAYKLPATEKITKLLGVEWNTGRSGIIAPRAVLEPVELDGSIVTYATLHN----- 371 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 + R R + +GD V+V +AG+VIP+V +V+ R D QP + P CP C Sbjct: 372 ----VADITR--RGLMLGDSVVVYKAGDVIPRVEAPVVHLRTGDEQPIAIPQVCPTCGDA 425 Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 + D + + RC G AC + + + + RD +IEGL + ++ D Sbjct: 426 I--DASQER------WRCVRGRAC--RVIASIGYAAGRDQLDIEGLAENRIQQLL---DA 472 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRNISLERFIFSL 557 + AD+F L R E +LG G S NL +I + + L R +L Sbjct: 473 GLIVDF-ADLFYLTR---------EQVLGLERMGATSTDNLLAAIERAKAQPLSRVFCAL 522 Query: 558 GIRHVGAEIARSLAKYYLSYQNF----AQEINNI--IAHNNDDWL--SLIRVPLVGDIIA 609 G+R G ++R +A+++ S A+ I + I + L+ + + D + Sbjct: 523 GVRGTGRSMSRRIARHFGSMDAIRAADAEAIEAVEGIGPKKAPGVVAELVELADLIDKLV 582 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFT----GTLQKIQRHK 665 +A V + A + P G + +V T G L+ + R++ Sbjct: 583 KAGVTMTEPGWTPPAEPGADAQADPEAG---GTSGLPLAGMSVVVTGAMSGALEALTRNE 639 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 E + + G S+ +S KT +++ G+ GSK KA+ LGV+I+ E+F L+ + Sbjct: 640 MNELIERAGGKASSSVSAKTSLLVAGEKAGSKRAKAESLGVRIVGPEEFAGLVGPF 695 >gi|168187649|ref|ZP_02622284.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund] gi|169294495|gb|EDS76628.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund] Length = 649 Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 198/717 (27%), Positives = 352/717 (49%), Gaps = 79/717 (11%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED--- 70 +E + + L +E++ D YY K ++D E+D F +L + E Sbjct: 1 MEDKTQRVKELIKELNEASDKYYNSDKTTMIDKEWD----------DKFDELKQLEQETE 50 Query: 71 ---PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 N P K+G E+ L KV H+IP SL K +I+DL+KFI +N I Sbjct: 51 VILSNSPTQKVGYEVKSKLDKVVHNIPLKSLGKTKSIDDLQKFIG----------NNEIL 100 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 K DG + Y+ G+ + + RG+G GED++ ++ IP L ++ +++ Sbjct: 101 IM--DKGDGLTCELIYDNGQLLQGSTRGNGEIGEDITHNVKTFKNIP--LQIDFKGYLKL 156 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246 GE I DF +N ++ + Y+N RN +G +R+L+ R + F+ L + Sbjct: 157 SGESVILDEDFELINAKLDEEDK--YSNSRNLVAGSVRQLDSKICDKRNVRFYAFSLLEC 214 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E K + E L+ + LGF ++ N+ + ++M+ + IDGLV+ Sbjct: 215 GEAEFKTKEEQLEFLSRLGFETIEYIKYDNS-EELEQVISKMQKSAYEKGFPIDGLVFAY 273 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + LG+ P I++KF +++ T+ + + Q+ RTG++ PVAR EPV I G+ Sbjct: 274 NNIEYANSLGDTLHHPLHSIAYKFYDEEYETKYIATEWQVSRTGMINPVARFEPVEIEGS 333 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATLHN DY + L + GD + V +A +VIPKV+ N+ + + Sbjct: 334 VVERATLHNLDYFEDL-----------KLGQGDTIKVIKANQVIPKVMS---NDTMSNTE 379 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP+C + L KT +++ C CSA+ + R+ H+ SR+A NI+GL Sbjct: 380 I--IPTECPVCGGKTEEKL-LKTARVLI---CINP-ECSAKHISRIVHYCSRNAMNIDGL 432 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ ++ F ++ DI+ L++ ++ +I NI GFG S N+ ++I K + Sbjct: 433 SEKTIEKFVN----LGYLKDIDDIYKLEQYKE----EIINIDGFGTKSYNNMIEAIEKSK 484 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + LE FIF+LG+ VG A+ L K + S + N + + + +GD Sbjct: 485 HCKLENFIFALGVPSVGLGTAKLLVKKFKSIEKVM----------NCNLEEIYSIDGIGD 534 Query: 607 IIAQAIVEFY-QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RH 664 ++ I ++ N +I V LLK + +++ S+++E K V TG + + R+ Sbjct: 535 VVGNEIYNYFIINKDSINLVNKLLKFI--DFEEVKESSSNKLEGKTFVITGDVHVFKNRN 592 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + ++G V+ +S+KTD +I D + SK +KA+ L + I+ EE+F+ +++ Sbjct: 593 EVKAKIEEMGGKVTGSVSKKTDYLINNDVESTSSKNQKAKDLNIPIITEEEFVEMIK 649 >gi|302668858|ref|YP_003832683.1| NAD-dependent DNA ligase LigA2 [Butyrivibrio proteoclasticus B316] gi|302397198|gb|ADL36101.1| NAD-dependent DNA ligase LigA2 [Butyrivibrio proteoclasticus B316] Length = 745 Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 208/765 (27%), Positives = 343/765 (44%), Gaps = 84/765 (10%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 AL + ++K+ L+ ++ YY P + D EYD L + A P + Sbjct: 9 ALGEQLSKKDYEKLKNKLMDLARAYYDDDAPKVSDHEYDMLMVQLKACEKKNPSWVTDDS 68 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + IGG + KVTH +P LS+E ++N E +++++ + K + FT+ Sbjct: 69 IS---QVIGGTASSKFSKVTHDVPMLSIEDVFNKESVKEWMENV-----KTNYPDAGFTV 120 Query: 131 EPKIDGTMITIRYEKGK-------------FVYAALRGDGHSGEDVSACIRAIPTIPRVL 177 E KIDG T+RY+ V A RG+G GEDV+ + IP +P+ L Sbjct: 121 EEKIDGLSCTLRYKTNDTEPYDEANCVCYDLVLAETRGNGIIGEDVTENVLQIPDVPKRL 180 Query: 178 SLN---IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233 L+ + +VRGE+Y+ +F N++ + GRKP ANPRN A+G LR+ + Sbjct: 181 FLSHDLYGDSFQVRGEIYMKHENFEKFNEKEVKAGRKPAANPRNLAAGTLRQKEAVLVKE 240 Query: 234 RYLNFFVHGL----GKTSEIFAKGQYEMLQKMRCLGF--PVNNGVRQANTFHGIVSYYNE 287 R LN F+ + G T +I + QYE +Q ++ GF + R ++ Y Sbjct: 241 RGLNMFIFRVQKVEGATRDILTRTQYEAMQILKKDGFKTAICGFARTFEEVEALIDEYET 300 Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347 K R YDIDG V K+D Q ++ I++K+ +K+ R+ DID+ +G Sbjct: 301 HKDGR--FGYDIDGAVVKIDVIEHQDDFSTSSKYIPGHIAYKYPQKEQKARVTDIDVALG 358 Query: 348 RTGILTPVARL------EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401 RTG LT A + EP+ + G ++ TLHN DYI+ R I +G Sbjct: 359 RTGKLTFTAVVCDDETGEPLQMCGTSVSRVTLHNMDYIR-----------ERHIGIGGVY 407 Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461 + ++GE+IPK+ + I E P+ + F P+ CP C S +V L + Sbjct: 408 GIFKSGEIIPKLTETIYKE--PE-RLFEVPTVCPFCGSPIVN--------LGSTDYFCSN 456 Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C + +++L +FV RD NIEGL + + F + PA ++ + Sbjct: 457 DNCKERAIQQLDYFVGRDQMNIEGLSIESIRFL--DSKGYINASAPASLYFQAEKWHEDG 514 Query: 522 T---------KIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAK 572 +EN G+ + SV NL +I+K R R + S G+ +VG A+ L K Sbjct: 515 VFAKLGKPEIHLENEDGWSEKSVENLVTAIDKSRTSDFIRVLASFGLPNVGHGQAKLLKK 574 Query: 573 YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA----- 627 + + ++ GD+I + + +F Q+ ++ + Sbjct: 575 AIEKFDGKEANYFGRLLEMYKAGYDFSKIEGFGDVIKKTLNDFCQSILDLGIPDKDHTAQ 634 Query: 628 ----LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILS 682 LL V + +S +E V TG+ + + R ++ + LG VS +S Sbjct: 635 KYVDLLDAVDILFIEEKAAGASSLEGLTFVVTGSFENYKPRKLLEDEIESLGGKVSGTVS 694 Query: 683 RKTDIIIVGDNPGS--KLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 KT +I D S K +KA++LGVKI++E+++ + N +L Sbjct: 695 AKTSYLINNDTTSSSGKNKKAKELGVKIISEQEYRAMAYLGNISL 739 >gi|145627934|ref|ZP_01783735.1| DNA ligase [Haemophilus influenzae 22.1-21] gi|144979709|gb|EDJ89368.1| DNA ligase [Haemophilus influenzae 22.1-21] Length = 346 Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 150/382 (39%), Positives = 230/382 (60%), Gaps = 50/382 (13%) Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400 D++ Q+GRTG +TPVA+LEPV + G ++NATLHN D I+ L+ I +GD Sbjct: 3 DVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLN-----------IAIGDT 51 Query: 401 VLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459 V+++RAG+VIP+++ ++ +ER PD A+P FP+ CP+C S+++R G+ VA RCT Sbjct: 52 VVIRRAGDVIPQIIGVL-HERRPDNAKPIIFPTNCPVCDSQIIR----IEGEAVA--RCT 104 Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519 GGL C+AQ+ E LKHFVSR A +I+G+G + ++ E I PAD+F L T Sbjct: 105 GGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRE----LIHTPADLFKLDL---T 157 Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN 579 + T++E + G S N +S+ ++ +L RFIF+LGIR VG A +LA ++ + Sbjct: 158 TLTRLERM---GAKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLD- 213 Query: 580 FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639 A + + L +VP VG+++A I F++ N+ VE L+ + G H Sbjct: 214 ---------ALKDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQ-----GVH 259 Query: 640 EKNV----SSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 + V +SE ++K +V TGTL ++ R++A+ + QLGA VS +S KTD +I GD Sbjct: 260 WETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDA 319 Query: 694 PGSKLEKAQQLGVKIMNEEQFL 715 GSKL KAQ+L + ++ EE+FL Sbjct: 320 AGSKLAKAQELNITVLTEEEFL 341 >gi|160881055|ref|YP_001560023.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg] gi|190359247|sp|A9KPL0|DNLJ_CLOPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160429721|gb|ABX43284.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg] Length = 653 Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 213/719 (29%), Positives = 343/719 (47%), Gaps = 87/719 (12%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG---- 73 ++ ++ L + + Y Q + I+ + EYD L + +L + E+ G Sbjct: 5 KQRITQLTELLDEAARVYEQEDREIMSNFEYDKL----------YDELKKLEEETGIVLA 54 Query: 74 --PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P K+G E+ L K H LSL+K + L W + L Sbjct: 55 GSPTRKVGYEILSELPKERHESAMLSLDKTKEVPALID--------WLGNKEG----ILS 102 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVR 188 K+DG I + Y G+ V A RG+G GE V+ + +P L IP E+I +R Sbjct: 103 WKMDGLTIVLTYRNGELVKAVTRGNGEVGEVVTNNAKVFKNLP----LTIPYEGELI-IR 157 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTS 247 GE I +DF +N ++ K Y NPRN SG +R+LN R +NFF L + Sbjct: 158 GEAVIRYSDFEMINAQIPDADAK-YKNPRNLCSGSVRQLNNAITAKRNVNFFAFALIRMD 216 Query: 248 EIFA-KGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 E+ K E ++ LGF V + A + Y+ E I + P D GLV Sbjct: 217 EMNRFKTMMEQFNWLKELGFDVVEEKLVTAENMAETMEYF-ESHIITNDFPSD--GLVLF 273 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 ++ + + LG ++ PR I+ K+ ++ T L +I+ RTG++ PVA EPV + G Sbjct: 274 FNDIAYGESLGRTSKFPRNGIAFKWRDEIKETTLQEIEWSASRTGLINPVAIFEPVELEG 333 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A+LHN ++GL ++ +GD+V V +A +IP++ D + H Sbjct: 334 TTVSRASLHNISIMEGL-----------ELGLGDKVTVYKANMIIPQIADNLTRSGH--- 379 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP+C D K V + C C A++++ HFVSRDA NIEG Sbjct: 380 --LPIPKTCPVCGG----DTMIKQDSDVKSLYCMNP-ECLAKKIKSFTHFVSRDAMNIEG 432 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 L + ++ I+ ADIF ++ ++ TT + GFG+ S NL DS+ K Sbjct: 433 LSEATIEKLIAKG----LIKELADIFHVKDFKEEITT----MEGFGEKSFRNLVDSVEKA 484 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R L +FI+SLGI +VG LA L + F + N + D+ L ++P +G Sbjct: 485 RTPILAKFIYSLGIANVG------LANAKLICKEFGYDFNKVSNATVDE---LTQIPQIG 535 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKI-QR 663 +IA+A V ++Q P N +E LLKE+ + + E SE ++ V TG+++ R Sbjct: 536 YVIAEAFVSYFQKPENKLIIEDLLKEI--TFEKEEAAGGSEKLKGLTFVITGSVEHFTNR 593 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ ++ + Q G V+ ++ KT+ +I DN SK +KA++LG+ ++ EE+F+ LL + Sbjct: 594 NEVKDVIEQHGGKVTGSVTAKTNYLINNDNTSSSSKNKKARELGIPVITEEEFIQLLNE 652 >gi|298345134|ref|YP_003717821.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063] gi|298235195|gb|ADI66327.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063] Length = 799 Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 163/514 (31%), Positives = 265/514 (51%), Gaps = 54/514 (10%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI----ILDSEYDALKRRCD 56 +KK+ IP E A + + L +I YY + + D+EYDAL + Sbjct: 2 VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQTPETGVTRLSDAEYDALFVQLQ 55 Query: 57 AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIY 115 + A+PDL + P + G N F H + + S++ +++ ++ + R+ Sbjct: 56 LLEAAYPDLVTPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWWARVE 115 Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP- 174 + + +D + E K+DG +++ Y G A RGDG +GEDV+ ++ I T+P Sbjct: 116 KSLEGQD---FSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIATVPV 172 Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233 R+ N+PE++E+RGEVY+ DF A+N G K +ANPRNAA+G L++ +P Sbjct: 173 RLSGENVPELVEIRGEVYLPLADFAAMNAARERDGEKLFANPRNAATGSLKQKDPVQAAK 232 Query: 234 RYLNFFVHGLGK-------------TSEIFAKGQYEMLQKMRCLGF---PVNNGVRQA-- 275 R L F HG+GK T E F YE+L+ P + G+ A Sbjct: 233 RPLAFLAHGVGKVRWADPGAAAHLETQEDF----YELLESWGLHSVRETPASLGLSLAGI 288 Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335 ++ I + ++M + R + IDG+V KVD F+ + LG AR+PRW ++KF ++ Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348 Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395 TRLL I++Q+GRTG +TP +E V + G+ ++ ATLHN + +V R +D+ Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHN---------AKEVAR--KDV 397 Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455 R GD V++++AG++IP+++ +++ R + P CP C + + K G + Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRTAGLPEWVMPDTCPSCGTELGAQ---KEGDI--D 452 Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 RC C AQ ERL H SR+A +IEGLG++ Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEE 486 Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 34/266 (12%) Query: 466 AQQLERLKH-FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524 A Q E L+ V R+ G QQ+ FF+ P L + Q +T + Sbjct: 552 ALQPEDLRDVMVWREIPGTGGRDWQQVRFFWAKPRP------------LPKAAQEATGQR 599 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF---- 580 G V V ++ + ++ L R + +L IRH+G AR++A+ +++ Sbjct: 600 FGPPVAGKV-VQTFFEQLQAAKSKELWRVLVALSIRHLGPVAARTIARQFVTMSALRVAS 658 Query: 581 ------AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 A+ I +IA + DW + VP Q IV+ ++ + AV Sbjct: 659 AEQLGEAEGIGEVIAASIRDWFT---VPW-----HQEIVDAWEA-AGVGAVSKAEGASEA 709 Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 S+ + N++ +E +V TG + R AQ V G + +S+KTD+++ G Sbjct: 710 SLA-GDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGKATGSVSKKTDLVVAGAGA 768 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GSKL KAQ LG+ ++ F LL++ Sbjct: 769 GSKLSKAQALGIPVIESAGFEALLEK 794 >gi|260438468|ref|ZP_05792284.1| DNA ligase, NAD-dependent [Butyrivibrio crossotus DSM 2876] gi|292809057|gb|EFF68262.1| DNA ligase, NAD-dependent [Butyrivibrio crossotus DSM 2876] Length = 649 Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 205/706 (29%), Positives = 339/706 (48%), Gaps = 98/706 (13%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLFK 88 YY + I+ + EYD L + +L E+ G P +K+G E L K Sbjct: 21 YYSGTDEIMSNFEYDRL----------YDELVELENETGIHMSGSPTSKVGYETLSELPK 70 Query: 89 VTHSIPTLSLEKIWNIEDLRKF--ITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 H P LSL+K +++ L +F + + W K+DG + + Y G Sbjct: 71 ENHEKPMLSLDKTKSVDTLAEFAGVHKCLLSW--------------KLDGLTVVLTYNNG 116 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRGEVYISKNDFLALND 203 + V A RG+G+ GE ++ + IP L IP E+I +RGE I+ +DF +ND Sbjct: 117 ELVKAVTRGNGYVGEVITPNAKVFKNIP----LTIPYKGELI-LRGEAIITYSDFNRIND 171 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI----FAKGQYEM 257 +I K Y NPRN SG +R+LN +IT R + L K I + Q+E Sbjct: 172 SIIDDAEK-YKNPRNLCSGSVRQLN-NEITAKRNVKLIAFALIKAEGINFHNSVEEQFEF 229 Query: 258 LQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L+K GF V + T H V Y+++ K + P D GLV D+ + LG Sbjct: 230 LEKQ---GFEVVERKIVDGTTVHSAVQYFSD-KIKENDFPSD--GLVMIYDDINYGLSLG 283 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A+ PR I+ K+ ++ A T L +I+ RTG++ PVA +PV + G +T A++HN Sbjct: 284 TTAKFPRNAIAFKWKDETALTTLREIEWSASRTGLINPVAIFDPVELEGTTVTRASVHNV 343 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 +K L + +GD++ V +A +IP++ + I + + P CP+ Sbjct: 344 SIVKEL-----------KLGIGDKITVYKANMIIPQIAENITS-----SGTAVIPDKCPV 387 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + L ++ CSA+ ++R +HF R+A NIEG+ Q LD F + Sbjct: 388 CGENTQIIESAGASFLYCVNK-----DCSAKHIKRFEHFCERNALNIEGISMQTLDKFIE 442 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 I+ DI+ L R ++ +I ++ GFG S N+ +SIN R L I+ Sbjct: 443 ----CGYIKEFEDIYHLDRYEE----RIVSMDGFGKKSYDNMIESINNSRTAMLANVIYG 494 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI +G AR + +Y F ++ +I D+ L+ + +G+++A + V+++ Sbjct: 495 LGIDGIGLAGARLICRY------FEDDVYKVINATKDE---LLLIDGIGEVLADSYVKYF 545 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK-IQRHKAQEYVTQLGA 675 + +N E LLKE+ + + E+N +S + K V TG+L R + + + Q G Sbjct: 546 SDEKNRKEFELLLKEL--HLVKEERNTNSPVSGKTFVITGSLNHYANRDELKAVIEQNGG 603 Query: 676 VVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +S KTD +I D + SK +KA++LG+ +++E+ F+ L+ Sbjct: 604 KTTGSVSAKTDYLINNDLTSNSSKNKKAKELGIPVISEDDFIKFLE 649 >gi|160940658|ref|ZP_02088001.1| hypothetical protein CLOBOL_05552 [Clostridium bolteae ATCC BAA-613] gi|158436393|gb|EDP14160.1| hypothetical protein CLOBOL_05552 [Clostridium bolteae ATCC BAA-613] Length = 699 Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 203/722 (28%), Positives = 339/722 (46%), Gaps = 72/722 (9%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 EA+ I K+L+ E YY + P + D+ YD L DA+ + Sbjct: 36 EAIRIHHLVKQLNQYRHE-------YYNMNAPSVSDAVYDCLFDELDALEKRTGIIL--- 85 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 N P +G + L KV H IP LSL+K K IT I+ F +K+ Sbjct: 86 -SNSPTQTVGYQAVSQLDKVHHPIPLLSLDKT-------KQITEIHDFMKKQKS-----L 132 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 L K+DG I + YE G+ + A+ RGDG GE V+ A IP LS+ + + + G Sbjct: 133 LMLKLDGLTIKLTYENGRLIEASTRGDGDEGEIVTHNASAFRNIP--LSIPYQKRLVISG 190 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-----DITRYLNFFVHGLG 244 E +I +DF L + ++ PY N RN A+G R L+ ++ Y + GL Sbjct: 191 EAFIHIHDFERLQNTLLDSNGNPYRNARNLAAGSARCLDANICKERSVSFYAFHVLEGLD 250 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQAN--TFHGIVSYYNEMKSIRSTLPYDIDGL 302 ++SE+ +K + L + LGF + + ++ + + ++ + S L IDGL Sbjct: 251 ESSEL-SKSREARLTALHPLGFDICPFLVLSSEASLETLNEAMATLRDLASELDIPIDGL 309 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V + D+ G R + + KF + T I+ Q GRTG + PVA +P+ Sbjct: 310 VLRYDDLPYSVACGRTGRFYKDGKAFKFEDDTFKTIFRSIEWQTGRTGEIAPVALFDPIE 369 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 I G+ ++ A+LHN +I+ L+ + G R+LV + +IP + + + + Sbjct: 370 IDGSTVSRASLHNLTFIQDLE-----------LYPGCRILVSKRNMIIPHIEENLDRGHY 418 Query: 423 PDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 D P + CP C S + + + ++V C CS Q L+R HF + A Sbjct: 419 QDMTPRT----CPCCGSPTRIYSRSSGSERIVQTLHCDNP-NCSQQILQRFVHFCEKKAM 473 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI G+ + L F D F ++ DI+ L R + +I ++ GFG S L++S Sbjct: 474 NIIGISEATLKQFI---DLGF-LKCFQDIYHLDR----FSDQIADMDGFGKKSYERLWNS 525 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 IN+ RN + R++ ++ I +G +R L +Y+ + N + + A + D+ L Sbjct: 526 INESRNTTFVRYLVAMDIPMIGRTASRKLEQYF--HGNLLEL--ELAAMSRFDFTCL--- 578 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK-----KLVFTG 656 G+ ++ I+E++ + N+ L KE+ E+ + +E +N +V TG Sbjct: 579 EDFGETMSSNIIEWFHDRENLTLWRNLQKEMH--FKEREETIMTETKNNPFAGCTIVATG 636 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L+ R + LGA + +++KTD +I G+ GSKL KAQQLGVK+++E++FL Sbjct: 637 KLENFTRDSINSKIISLGATAGSSVTKKTDYLICGEKAGSKLAKAQQLGVKVLSEQEFLN 696 Query: 717 LL 718 ++ Sbjct: 697 MI 698 >gi|255283571|ref|ZP_05348126.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469] gi|255265833|gb|EET59038.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469] Length = 667 Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 200/724 (27%), Positives = 329/724 (45%), Gaps = 77/724 (10%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQ + L Q ++ H + YY + P I D EYD L + +LA E G Sbjct: 1 MEQKITRMKQLIQNLNKHRNAYYNLNAPTITDQEYDRL----------YDELAALEKETG 50 Query: 74 ------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P +G SL KVTH LSL+K + ++ +TR N Sbjct: 51 VILSYSPTQTVGYYPVSSLAKVTHPHRLLSLDKTKQVSEICALLTR----------NPAL 100 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 L K+DG + YE GK + A+ RGDG +GED++ I A +P L++ + + + Sbjct: 101 LML--KLDGLTTKLVYENGKLLQASTRGDGETGEDITHNIPAYRNVP--LTIPYTKRLVI 156 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFF--VHGLGK 245 GE YI +DFL L D + KPY N RN A+G +R LNP +F H L Sbjct: 157 TGESYIHADDFLRLKDTLFDSSGKPYRNARNLAAGSVRSLNPEKCAPRCVYFSPFHVLEG 216 Query: 246 TSEIFAKGQYEM-LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS-----TLPYDI 299 EI ++ L ++ GF + + + ++ +R +P I Sbjct: 217 LEEIPHSDSRKLRLSSLKPFGFDICPYIALTDPVPSQEQVQEAIEQLRKEATEKQIP--I 274 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V D S K G + +++KF ++Q T L DI+ R+G + PV + Sbjct: 275 DGIVAIFDSLSYSKSCGSTGHHYKDGLAYKFEDEQYETVLRDIEWTPTRSGEIAPVGVFD 334 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 V I G ++ A+LHN +IKGL ++ G R+LV + +IP + + + Sbjct: 335 TVEIDGCKVSRASLHNLTFIKGL-----------ELVPGCRILVSKRNMIIPHIEENLDR 383 Query: 420 ERHPDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 R+ D P CP C S+ + G+++ C G +C Q L + +HF + Sbjct: 384 GRYHDI----VPPLCPCCSSKTWICRKKASDGRIIETVHC-GNPSCDTQILRKYEHFTGK 438 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A NIEGL L+ F D + + D++ L R ++ +I + GFG+ S L Sbjct: 439 KAMNIEGLSSATLERFL---DLGYIMSF-QDLYHLDRYRE----QILQLEGFGEKSFDRL 490 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +DSI K R+ R++ ++ I +G +R L + F +++ A D+ Sbjct: 491 WDSIQKSRHTDFVRYLVAMDIPMIGRTKSRILNEI------FQGSLDDFEAAAAGDY-DF 543 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVF 654 + G+I+ I ++ + N+ + L KE + + E + EN + +V Sbjct: 544 STLEDFGEILNHNIHSWFSDEENLHLWKELQKEFTFE-SKEENTMKETRENPFRGRTVVA 602 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG L+ R + +LG + +++KTD +I G+ GSKL KAQ+LG+ ++ E++F Sbjct: 603 TGKLEHFTRDGINTKILELGGKPGSSVTKKTDYLICGEKAGSKLSKAQELGIPVLTEQEF 662 Query: 715 LFLL 718 L ++ Sbjct: 663 LDMI 666 >gi|304390721|ref|ZP_07372673.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325604|gb|EFL92850.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 799 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 162/514 (31%), Positives = 265/514 (51%), Gaps = 54/514 (10%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI----ILDSEYDALKRRCD 56 +KK+ IP E A + + L +I YY + + D+EYDAL + Sbjct: 2 VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQTPETGVTRLSDAEYDALFVQLQ 55 Query: 57 AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIY 115 + A+PDL + P + G N F H + + S++ +++ ++ + R+ Sbjct: 56 LLEAAYPDLVTPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWWARVE 115 Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP- 174 + + +D + E K+DG +++ Y G A RGDG +GEDV+ ++ I T+P Sbjct: 116 KSLEGQD---FSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIATVPV 172 Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233 R+ N+PE++E+RGEVY+ DF A+N G K +ANPRNAA+G L++ +P Sbjct: 173 RLSGENVPELVEIRGEVYLPLADFAAMNAARERDGEKLFANPRNAATGSLKQKDPVQAAK 232 Query: 234 RYLNFFVHGLGK-------------TSEIFAKGQYEMLQKMRCLGF---PVNNGVRQA-- 275 R L F HG+G+ T E F YE+L+ P + G+ A Sbjct: 233 RPLAFLAHGVGEVRWADPGAAAHLETQEDF----YELLESWGLHSVRETPASLGMSLAGI 288 Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335 ++ I + ++M + R + IDG+V KVD F+ + LG AR+PRW ++KF ++ Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348 Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395 TRLL I++Q+GRTG +TP +E V + G+ ++ ATLHN + +V R +D+ Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHN---------AKEVAR--KDV 397 Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455 R GD V++++AG++IP+++ +++ R + P CP C + + K G + Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRPAGLPEWVMPDTCPSCGTELGAQ---KEGDI--D 452 Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 RC C AQ ERL H SR+A +IEGLG++ Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEE 486 Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 34/266 (12%) Query: 466 AQQLERLKH-FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524 A Q E L+ V R+ G QQ+ FF+ P L + Q +T + Sbjct: 552 ALQPEDLRDVMVWREIPGTGGRDWQQVRFFWAKPRP------------LPKAAQEATGQR 599 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF---- 580 G V V ++ + ++ L R + +L IRH+G AR++A+ +++ Sbjct: 600 FGPPVAGKV-VQTFFEQLQAAKSKELWRVLVALSIRHLGPVAARTIARQFVTMSALRVAS 658 Query: 581 ------AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 A+ I +IA + DW + VP Q IV+ ++ + AV Sbjct: 659 AEQLGEAEGIGEVIAASIRDWFT---VPW-----HQEIVDAWEA-AGVGAVSKAEGASEA 709 Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 S+ + N++ +E +V TG + R AQ V G + +S+KTD+++ G Sbjct: 710 SLA-GDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGKATGSVSKKTDLVVAGAGA 768 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GSKL KAQ LG+ ++ F LL++ Sbjct: 769 GSKLSKAQALGIPVIESAGFEALLEK 794 >gi|315655583|ref|ZP_07908481.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333] gi|315489647|gb|EFU79274.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333] Length = 794 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 163/518 (31%), Positives = 263/518 (50%), Gaps = 62/518 (11%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI----ILDSEYDALKRRCD 56 MKK+ IP E A + + L +I YY + + D+EYDAL + Sbjct: 1 MKKKTSIP------ESALAQHADLVDQIEAARTDYYDQTPETGVTRLSDAEYDALFVQLQ 54 Query: 57 AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIY 115 + A+PDL + P + G N F H + + S++ +++ ++ + R+ Sbjct: 55 LLEAAYPDLVTPDSPTQTVGGGGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWWARVE 114 Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP- 174 + + +D + E K+DG +++ Y G A RGDG +GEDV+ ++ I T+P Sbjct: 115 KSLEGQD---FSVSAEVKVDGLAMSLTYLHGALTVGATRGDGFTGEDVTENVKTIATVPV 171 Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233 R+ N+PE++E+RGEVY+ DF A+N G K +ANPRNAA+G L++ +P Sbjct: 172 RLSGENVPELVEIRGEVYLPLADFAAMNAIRERDGEKLFANPRNAATGSLKQKDPVQAAK 231 Query: 234 RYLNFFVHGLGK-------------TSEIFAKGQYEMLQKM---------RCLGFPVNNG 271 R L F HG+G+ T E F YE+L+ LG P+ Sbjct: 232 RPLAFLAHGVGEVRWNDPGAAAHLETQEDF----YELLESWGLHSVRETPASLGLPLAG- 286 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 +T + + ++M + R + IDG+V KVD F+ + LG AR+PRW ++KF Sbjct: 287 ---MHTLAEVHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFP 343 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ TRLL I++Q+GRTG +TP +E V + G+ ++ ATLHN + +V R Sbjct: 344 PEEVHTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHN---------AKEVAR- 393 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +D+R GD V++++AG++IP+++ +++ R + P CP C + + K G Sbjct: 394 -KDVRPGDTVVLRKAGDIIPEILGPVISLRPAGLPEWVMPDTCPSCGTELGAQ---KEGD 449 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 + RC C AQ ERL H SR A +IEGLG++ Sbjct: 450 I--DLRCPNQSGCPAQITERLIHVGSRYALDIEGLGEE 485 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/256 (23%), Positives = 102/256 (39%), Gaps = 37/256 (14%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 V R+ G QQ+ FF+ P L + Q +T + G V Sbjct: 561 MVWREIPGTAGRDWQQVRFFWAKPRP------------LPKSAQEATGQRFGPPVAGKV- 607 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF----------AQEI 584 V ++ + ++ L R + +L IRH+G AR++A+ + + + + Sbjct: 608 VQTFFEQLQAAKSKELWRVLVALSIRHLGPVAARTIARQFATMSAIRAASVEQLGEVEGV 667 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 +IA + DW + VP +I+ AV + P++ Sbjct: 668 GEVIAASIHDWFT---VPWHQEIVDAWEAAGVGAAGQADAVSGTPLALEPTL-------- 716 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 + +V TG + R AQ V G + +S+KTD+++ G GSKL KAQ L Sbjct: 717 ---DGLTVVITGNVPGYTRESAQLAVEARGGKATGSVSKKTDLVVAGAGAGSKLAKAQAL 773 Query: 705 GVKIMNEEQFLFLLQQ 720 G+ ++ F LL++ Sbjct: 774 GIPVIESAGFEALLEK 789 >gi|163784741|ref|ZP_02179548.1| DNA ligase (NAD dependent) [Hydrogenivirga sp. 128-5-R1-1] gi|159879989|gb|EDP73686.1| DNA ligase (NAD dependent) [Hydrogenivirga sp. 128-5-R1-1] Length = 414 Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 159/422 (37%), Positives = 231/422 (54%), Gaps = 38/422 (9%) Query: 2 KKRQL--IPIEALSI-EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI 58 K RQL I IE L E A K ++ L + I YHD YY + P+I D EYD L +I Sbjct: 13 KTRQLLKISIEDLKTKEDAEKIINDLREVIKYHDWKYYVLANPVISDYEYDKLFHLLVSI 72 Query: 59 AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW 118 +P+L ++ P ++ + KV H P LSLE +N EDLR F R+ Sbjct: 73 EKKYPELITADSPT---QRVPSGLIKEFPKVKHLAPMLSLENSYNEEDLRDFDRRVKEI- 128 Query: 119 QKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 + I +++EPK DG I + YE FV A RGDG G+D++ ++ I TIP LS Sbjct: 129 --TGLDEIEYSVEPKFDGAGIALVYENNLFVRGATRGDGAVGDDITPNLKVIRTIP--LS 184 Query: 179 LNIPE----IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233 + + IE+RGEV I+K F +N E + G +ANPRNAA+G LR NP ++ Sbjct: 185 ADFEKYGIKTIEIRGEVLINKELFKKINQERLEEGLPLFANPRNAAAGSLRLQNPKEVAK 244 Query: 234 RYLNFFVHGLGKTSE--------IFAKGQYEMLQKMRCLGF--PVNNGVRQANTFHGIVS 283 R L FV+ + T + K E ++ + LGF P ++ ++ Sbjct: 245 RGLEAFVYQITYTVDENENNLLGTKLKKHSESIKMLYELGFKSPYKE-IKVCKNIDEVID 303 Query: 284 YYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDID 343 Y N+ + R + PY+IDG+V KV++ SL LG + PRW I++KF +QA+T+L+D+ Sbjct: 304 YCNQWQEKRDSYPYEIDGMVVKVNDISLYDTLGATSHHPRWAIAYKFQARQATTKLIDVV 363 Query: 344 IQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLV 403 Q+GRTG +TPV +LEPV IGG ++++ +L NED+IK +DIR+GD VLV Sbjct: 364 FQVGRTGAITPVGKLEPVEIGGVVVSSVSLINEDFIK-----------EKDIRIGDLVLV 412 Query: 404 KR 405 +R Sbjct: 413 ER 414 >gi|315656502|ref|ZP_07909391.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493061|gb|EFU82663.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 799 Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 162/514 (31%), Positives = 265/514 (51%), Gaps = 54/514 (10%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPI----ILDSEYDALKRRCD 56 +KK+ IP E A + + L +I YY + + D+EYDAL + Sbjct: 2 VKKKTSIP------ESALAQHADLVDQIEAARTDYYDQTPETGVTRLSDAEYDALFVQLQ 55 Query: 57 AIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTL-SLEKIWNIEDLRKFITRIY 115 + A+PDL + P + G N F H + + S++ +++ ++ + R+ Sbjct: 56 LLEAAYPDLVTPDSPTQTVGGSGETANTEGFPPHHHLCQMGSIDDVFSYAEVDAWWARVE 115 Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP- 174 + + +D + E K+DG +++ Y G A RGDG +GEDV+ ++ I T+P Sbjct: 116 KSLEGQD---FSVSAEVKVDGLAMSLTYLHGTLAVGATRGDGFTGEDVTENVKTIATVPV 172 Query: 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT- 233 R+ N+PE++E+RGEVY+ DF A+N G K +ANPRNAA+G L++ +P Sbjct: 173 RLSGENVPELVEIRGEVYLPLADFAAMNATRERDGEKLFANPRNAATGSLKQKDPVQAAK 232 Query: 234 RYLNFFVHGLGK-------------TSEIFAKGQYEMLQKMRCLGF---PVNNGVRQA-- 275 R L F HG+G+ T E F YE+L+ P + G+ A Sbjct: 233 RPLAFLAHGVGEVRWADPGAAAHLETQEDF----YELLESWGLHSVRETPASLGLSLAGI 288 Query: 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQA 335 ++ I + ++M + R + IDG+V KVD F+ + LG AR+PRW ++KF ++ Sbjct: 289 HSLAEIHTVLDQMTAHRHDFAHQIDGVVLKVDSFAQRDALGSTARAPRWACAYKFPPEEV 348 Query: 336 STRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDI 395 TRLL I++Q+GRTG +TP +E V + G+ ++ ATLHN + +V R +D+ Sbjct: 349 HTRLLGIEVQVGRTGRVTPFGVMERVLVDGSYVSRATLHN---------AKEVAR--KDV 397 Query: 396 RVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAA 455 R GD V++++AG++IP+++ +++ R + P CP C + + K G + Sbjct: 398 RPGDTVVLRKAGDIIPEILGPVMSLRPAGLPEWVMPDTCPSCGTELGAQ---KEGDI--D 452 Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 RC C AQ ERL H SR+A +IEGLG++ Sbjct: 453 LRCPNQSGCPAQITERLIHVGSRNALDIEGLGEE 486 Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 34/266 (12%) Query: 466 AQQLERLKH-FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524 A Q E L+ V R+ G QQ+ FF+ P L + Q +T + Sbjct: 552 ALQPEDLRDVMVWREIPGTGGRDWQQVRFFWAKPRP------------LPKAAQEATGQR 599 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF---- 580 G V V ++ + ++ L R + +L IRH+G AR++A+ +++ Sbjct: 600 FGPPVAGKV-VQTFFEQLQAAKSKELWRVLVALSIRHLGPVAARTIARQFVTMSALRVAS 658 Query: 581 ------AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 A+ I +IA + DW + VP Q IV+ ++ + AV Sbjct: 659 AEQLGEAEGIGEVIAASIRDWFT---VPW-----HQEIVDAWEA-AGVGAVSKAEGASEA 709 Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 S+ + N++ +E +V TG + R AQ V G + +S+KTD+++ G Sbjct: 710 SLA-GDTNLAPTLEGLTVVITGNIPGYTRESAQLAVEARGGKATGSVSKKTDLVVAGAGA 768 Query: 695 GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 GSKL KAQ LG+ ++ F LL++ Sbjct: 769 GSKLSKAQALGIPVIESAGFEALLEK 794 >gi|331002925|ref|ZP_08326438.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167] gi|330413218|gb|EGG92592.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167] Length = 650 Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 205/699 (29%), Positives = 352/699 (50%), Gaps = 80/699 (11%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY + I+ + EYD L A+ ++ S N P +G E+ L K H Sbjct: 20 SYYVDAVEIMPNIEYDKLYDELLALEKE-TNVVLS---NSPTQNVGYEIAGELPKKAHES 75 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL+K ++ DL+ +++ DN + K+DG I + Y G+ A Sbjct: 76 PMLSLDKTKSVADLKSWLS----------DNKALLSW--KMDGLTIVLTYRNGELAEAVT 123 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RG+G GE ++ + IP L + + +RGE I +DF +ND I Y Sbjct: 124 RGNGTIGEVITNNAKNFQNIP--LKIEFKGELILRGEAVIKYSDFKRIND-AIEDADAKY 180 Query: 214 ANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPV 268 NPRN SG +R+LNP IT+ Y N F + + ++ F + + + ++ GF V Sbjct: 181 KNPRNLCSGSVRQLNPA-ITKARMVYCNIF--NVVRAEDMDFENSKAKQFEWVKNEGFDV 237 Query: 269 -NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 + + ++ + E K + + +P D GLV +D+ +L ++LG ++ PR ++ Sbjct: 238 VEYKITDSKNIESDIAEF-ESKIVDNDIPSD--GLVLLLDDIALGERLGSTSKFPRNAMA 294 Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387 K+++++ +T+L I+ RTG++ P+A EPV + G ++ A+LHN + L Sbjct: 295 FKWSDERQNTKLKYIEWSPSRTGLINPIAVFEPVELEGTTVSRASLHNVSIFEDL----- 349 Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC--QSRVVRDL 445 M G VGD + V +A +IP+V E + P CP C Q+ V +D Sbjct: 350 -MLG-----VGDEISVYKANMIIPQVY-----ENFTKSNTEKIPDVCPACGSQTTVKKDN 398 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 + K CT C + +++ SRDA NI+GL + L+ F F I+ Sbjct: 399 DSK------VLLCTNP-DCQIKHIKQYALMASRDALNIDGLSESTLEKFLS---KGF-IK 447 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 +D+F L R + +I N+ GFG S L +I++ R+ ++ RF++SLGI +G+ Sbjct: 448 SDSDLFNLSRYKD----EIINMEGFGKRSYEKLIAAIDEARHTNMARFLYSLGITGIGSA 503 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A+ +A+Y F +++ II + DD L+ + +G+++A +IVEF+ N +NI + Sbjct: 504 NAKMIARY------FDNDLDRIINASKDD---LLEIEGIGEVLANSIVEFFGNEKNIENI 554 Query: 626 EALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSR 683 ++L + + I E++ + +I K V TGT++ R++ +E + + G VS +S Sbjct: 555 KSLRELL---IFETEESETKDIFAGKVFVITGTVEHFSNRNELKEIIEKNGGKVSGSVSS 611 Query: 684 KTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 KT+ +I D SK +KA++LGV+I++EE FL LL++ Sbjct: 612 KTNFLINNDTTSNSSKNKKAKELGVEIISEEDFLKLLEE 650 >gi|326792059|ref|YP_004309880.1| DNA ligase, NAD-dependent [Clostridium lentocellum DSM 5427] gi|326542823|gb|ADZ84682.1| DNA ligase, NAD-dependent [Clostridium lentocellum DSM 5427] Length = 649 Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 198/700 (28%), Positives = 336/700 (48%), Gaps = 84/700 (12%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL------NKIGGEMNLSLF 87 Y Q + ++ + EYD + +L R E+ G + K+G E+ SL Sbjct: 20 AYEQEDREVMSNYEYDKF----------YDELKRLEEETGIILAGSVTQKVGYEIASSLP 69 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K+TH LSL+K + L+ F+ L K+DG I YE+G+ Sbjct: 70 KITHPKRMLSLDKTKEVSKLKAFLGNQEGL------------LSWKLDGLTIVCIYEEGQ 117 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE+++ + +P L+++ E + +RGE I+ +DF +N E + Sbjct: 118 LVSAVTRGNGSVGEEITNNAKTFKELP--LAIDYKERVVLRGEAIITYSDFERIN-EGLG 174 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 + Y NPRN SG +R+LNP IT R + + L + A + E L+ ++ G Sbjct: 175 EKEEKYKNPRNLCSGSVRQLNP-QITAGRNVRLYAFTLVEGGPDVAT-KAEQLEWLKARG 232 Query: 266 FPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 F V AN V+Y+ E +I+S P+ DGLV ++ LGE A+ P+ Sbjct: 233 FKVVEYKHVTANNIEETVAYFAE--AIKSQ-PFASDGLVLTYNDREYSASLGETAKFPKD 289 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 I+ K+ ++ T+LL+++ RTG++ PVA EPV I G + A++HN ++ L Sbjct: 290 AIAFKWQDEIVETKLLEMEWNTSRTGLINPVAIFEPVEIEGTTVERASVHNLSILEEL-- 347 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC--QSRVV 442 + +GD + V +A +IP++ E + P CP+C + ++ Sbjct: 348 ---------KLGIGDTIKVYKANMIIPQIA-----ENLTQSANVEIPEVCPVCGAHTMIM 393 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 ++ KT L+ + C AQ+L L HF +RDA NIEGL + ++ + Sbjct: 394 KEKEAKT--LICPNS-----NCKAQRLRALAHFTTRDAMNIEGLSEATIEKLLEK----G 442 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 ++ ++ L R + ++ + G G S L SINK R+++L F+++LGI V Sbjct: 443 YLKDFTSLYHLDRYE----AEVIEMEGLGKKSFDKLIKSINKSRDVALANFVYALGIAQV 498 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 G A+ + K+ F E++ ++ + LI + VG +IA+ E++ N Sbjct: 499 GLGTAKLICKH------FNNELDEMMKAR---YEQLITIDGVGPVIAKEFEEYFNLEENK 549 Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAIL 681 +E L+KE+ + + S I NK V TG + + R + Q + LG V+ + Sbjct: 550 AMLETLVKEIHFKLENVTISQESPILNKTFVITGDVNYFKNRKELQAKIETLGGKVTGSV 609 Query: 682 SRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719 S+ TD +I D+ SK +KA++LG+ I+ E QFL +++ Sbjct: 610 SKNTDYLINNDSESNSSKNKKAKELGIPILTEAQFLEIIE 649 >gi|321309600|ref|YP_004191929.1| DNA ligase [Mycoplasma haemofelis str. Langford 1] gi|319801444|emb|CBY92090.1| DNA ligase [Mycoplasma haemofelis str. Langford 1] Length = 662 Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 194/702 (27%), Positives = 340/702 (48%), Gaps = 60/702 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 IE RKEL LE+ YY P D YD R + H +P+ ++ED Sbjct: 7 IENLRKELKDLEE-------AYYA-GDPKESDEVYDFKLRTLLNLEHKYPEY-KTED--S 55 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P N++G +N KV H P LSL +N E+L+ F + +K+ + + LEPK Sbjct: 56 PSNRVGFYLNPENIKVHHDFPMLSLNNAFNNEELQSFFNQC-----EKERGELEYFLEPK 110 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I++ Y KG A RGDG GED+++ I I +IP + + + I +RGE+YI Sbjct: 111 VDGASISLIYRKGYLHQAISRGDGEIGEDLTSKILQINSIP--IKIESEDDITIRGEIYI 168 Query: 194 SKNDFLALN-DEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFA 251 K++F A DE + K +AN RN +G LR +I++ L + + + E+ Sbjct: 169 RKSNFEAQRYDESSS---KSFANHRNFVAGTLRLKKSEEISKKGLRVKAYSIVRAEEVGI 225 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQ--ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q ++++++R LG ++ + I S+ + I+ T DGLV KV+E Sbjct: 226 DKQSQIIERIRELGLESHDPKETLISGNKEEIYSFIKAFEDIKKTSDIPYDGLVIKVNET 285 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 S + +G ++ P+W I++K+ ++LL I +GRTG +T A++EPV + G+ + Sbjct: 286 SKWEDIGYTSKFPKWAIAYKYPSLVKESKLLKIIPTVGRTGKITYSAQVEPVELDGSTVQ 345 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN +YI L D+RVGD V + ++GE++P+++ R D + + Sbjct: 346 FATLHNANYITEL-----------DLRVGDYVSIYKSGEIVPRIIGFSRERRSEDLERWI 394 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 + CP C S ++ N ++ C C ++ + +F +R NIEGL Sbjct: 395 PSTHCPSCNSELITKQN------LSTQYCPNK-DCLEKKYAQFTYFSARGMANIEGLS-- 445 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + K S+ I ++ + + Q T + L + + L SI+K RN Sbjct: 446 -IHIIMK----LHSLGILQNLDDIYKIHQHRDTILNADLRIKEKLLNKLIASIDKSRNRE 500 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 + + LGI +G E+A + ++ S I+ +++ + ++ +S + +G+ A Sbjct: 501 SHKILCGLGIEFIGEEVANLIFGHFGS-------IDEVLSASKEELMS---IDGIGEKCA 550 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++I+++ NI V+ L ++ + ++S + K++V TG + + + Sbjct: 551 ESIIQWSSQQENIDLVKRLKEQGLFKNHSTFEVINSFVRGKRVVITGKFKISREELSSRL 610 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 G + +S K D +I G+ GSKL KA+ L ++I+ E Sbjct: 611 RNNYGVKIVGNISSKVDYLIAGEGAGSKLIKAKDLNIQILTE 652 >gi|225419696|ref|ZP_03761999.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme DSM 15981] gi|225041660|gb|EEG51906.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme DSM 15981] Length = 654 Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 222/726 (30%), Positives = 348/726 (47%), Gaps = 108/726 (14%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73 KEL SL +S YYQ S+ I+ + EYD L + +L E G Sbjct: 9 KELVSL---LSKAGKAYYQESREIMSNFEYDRL----------YDELTALERETGVTLSG 55 Query: 74 -PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G E+ L K TH P LSL+K ++EDL+ ++ D + L Sbjct: 56 SPTKRVGYEVLSELPKETHESPMLSLDKTKSVEDLQAWLG---------DQKGL---LSW 103 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGE 190 K+DG I + Y+ G V A RG+G GE ++ R IP LNI ++ +RGE Sbjct: 104 KMDGLTIVLTYDGGTLVKAVTRGNGEIGEVITPNARVFANIP----LNIAHKGLVVLRGE 159 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 I +DF +N+E+ V K Y NPRN SG +R+LN + IT R ++F L + Sbjct: 160 AVILYSDFRRINEEIEDVDAK-YKNPRNLCSGSVRQLN-SQITAERNVHFEAFSLVRAEG 217 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQ--ANTFHGIVSYYNEMKSIRSTLPYDI--DGLV 303 + F + + ++ GF V + R+ A T V + + + YDI DGLV Sbjct: 218 VDFENSRKRQFEWLKSQGFEVVD-YREVTAETLPQAVQEFAD-----AVEGYDIPSDGLV 271 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 D+ + + LG A+ PR I+ K+ ++ T++ I+ RTG++ PVA EPV + Sbjct: 272 LLFDDIAYGESLGRTAKFPRNSIAFKWQDEIRETKMRYIEWSPSRTGLINPVAVFEPVEL 331 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE--R 421 G ++ A++HN ++GL+ + DR+ V +A +IP++ D + + Sbjct: 332 EGTTVSRASVHNISILEGLELGEE-----------DRITVYKANMIIPQIADNLTRSGVK 380 Query: 422 HPDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 H P CP+C +R +N V + C C A++++ VSRDA Sbjct: 381 H-------IPEQCPVCGGATEIRQVND-----VRSLYCINP-DCQAKKIKSFTLLVSRDA 427 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 NI+GL + L+ F A I ADIF L R Q+ I + GFG S NL Sbjct: 428 LNIDGLSEATLEKFIG----AGFIHEYADIFHLDRHQEA----IVEMEGFGQKSYDNLVA 479 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 S+ K + +L R I+ LGI +G A++L ++ F E N+ + ++ L+ Sbjct: 480 SVAKAADTALPRVIYGLGIAGIGLANAKALCRH------FGYEFENMRKADEEE---LVA 530 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE----NKKLVFTG 656 V +G ++A+A +E++ + N AV+ L E++ EK V E E K V TG Sbjct: 531 VDGIGAVLAKAWMEYFSSEANNEAVDHLFAELTI-----EKEVVEETEQIFAGKTFVITG 585 Query: 657 TLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQ 713 +L+ R + QE + G + +S KT +I D +P SK +KA+ LGV I+ EE+ Sbjct: 586 SLEHFGNRKELQELIESKGGKAAGSVSAKTSYLINNDSLSPSSKNKKAKDLGVPIITEEE 645 Query: 714 FLFLLQ 719 FL +L+ Sbjct: 646 FLRMLE 651 >gi|295090337|emb|CBK76444.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10] Length = 676 Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 202/716 (28%), Positives = 331/716 (46%), Gaps = 80/716 (11%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------ 73 ++ L Q ++ H YY + P I D+EYD + + L R E+ G Sbjct: 17 KIKELVQTLNRHRHAYYNLNAPEISDAEYDRM----------YDQLERLEEETGIIYSNS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G L KV H P LSL+K +EDL YRF N L K Sbjct: 67 PTQTVGYPPVSELKKVPHPHPLLSLDKTKQVEDL-------YRFC-----NGHAALLMLK 114 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG + + YE G+ + AA RGDG GE+++ I IP L+++ E + V GE +I Sbjct: 115 LDGLTVKLTYENGRLMEAATRGDGEIGEEITHNIPTFENIP--LTVSYKERLVVTGEAFI 172 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF----VHGLGKTSE 248 K DF LN + KPY N RN A+G +R L+P + R + F + GL + Sbjct: 173 RKKDFERLNLTIRDKDGKPYKNARNLAAGSVRSLDPENCKGRCVTFLPFNVLEGLDEGEH 232 Query: 249 IFAKGQYEMLQKMRCLGF------PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + + E L ++ LGF P+N + ++K L IDG+ Sbjct: 233 --SNSREERLYQLSKLGFGSCPYIPLNPDQVSPEYLELRI---QDLKEKAEMLDLPIDGM 287 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V D+ + G + ++ KF ++ T L I+ R G L PVA + V+ Sbjct: 288 VLIFDDLAYSASRGRTGHHYKDGLAFKFEDETYETTLQSIEWTPSRFGELAPVAVFDTVD 347 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 I G ++ ATLHN +I+ L+ + G R+LV + +IP + D + R+ Sbjct: 348 IDGCSVSRATLHNLTFIRELE-----------LVSGCRILVSKRNMIIPHIEDNLDRGRY 396 Query: 423 PDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 DA P + CP C + +R + G+++ C+ +C QQL++ HFV R A Sbjct: 397 QDAAP----AICPCCGAPTELRRKTAENGRIIETVHCSNP-SCEIQQLKKFVHFVCRKAM 451 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NIEGL + L+ F +R DI+ L + + +I + GFG+ S L+++ Sbjct: 452 NIEGLSEATLEKFLN----LGYLRTFHDIYHLDQHRD----EIIRLDGFGEKSFDRLWNA 503 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I RN + R++ S+ I VG +R L F+ +++ A DD+ ++ Sbjct: 504 IQASRNTTFVRYLISMDIPMVGRTKSRVLDTI------FSGNLDDFRAAAIDDY-DFSQL 556 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQ 659 G + + I +++ + N+ + L KE + + E ++ + K +V TG L+ Sbjct: 557 EDFGATLNRNIHDWFADEENLALWDTLQKEFTFEERKEETIMAKDNVFAGKTIVATGKLE 616 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R + + + ++GA + ++ KTD +I G+ GSKL KA+ LG+ I++E +FL Sbjct: 617 NFTRSEINDKILEIGAKPGSSVTGKTDYLICGEKAGSKLAKAKSLGITILSEAEFL 672 >gi|283797409|ref|ZP_06346562.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1] gi|291074764|gb|EFE12128.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1] gi|295090074|emb|CBK76181.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10] Length = 684 Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 198/697 (28%), Positives = 342/697 (49%), Gaps = 77/697 (11%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP---NGPLNKIGGEMNLSLFKVT 90 YYQ S+ ++ + EYD L +L R N P +G E+ SL K Sbjct: 46 AYYQESREVMSNFEYDRL-------YDELLELERETGTVFGNSPTQNVGYEVVSSLPKER 98 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 H P LSL K ++E+L++++ L K+DG I + YE+GK V Sbjct: 99 HESPMLSLNKTKSVEELKEWLGEQSGL------------LSWKMDGLTIVLTYEEGKLVK 146 Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 A RG+G GE ++ + +P +++ + +RGE I +DFL +N+E+ V Sbjct: 147 AVTRGNGEIGEVITNNAKTFVNVP--MTIPYKGQLVLRGEAVIRYSDFLKINEEIEDVDA 204 Query: 211 KPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGF- 266 + Y NPRN SG +R+LN +++T R + FF L + F + E ++ GF Sbjct: 205 R-YKNPRNLCSGSVRQLN-SEVTAQRKVRFFAFSLVSADGVDFKNSREEQFLWLKSQGFE 262 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 V + A+T V+ ++E ++ +P D GLV D+ + + LG A+ PR I Sbjct: 263 TVEYRLVTADTLEAAVASFSEAVE-KNDVPSD--GLVLLFDDIAYGQSLGRTAKFPRDSI 319 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 + K+A++ T L I+ RTG++ PVA EPV + G ++ A++HN ++ L Sbjct: 320 AFKWADEIQETTLSYIEWSASRTGLINPVAVFEPVELEGTTVSRASVHNISIMEAL---- 375 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV-VRDL 445 ++ GDR+ V +A +IP++ D + D P CP+C + VR + Sbjct: 376 -------ELGEGDRITVYKANMIIPQIADNLTRSGVRD-----IPETCPVCGGKTEVRKV 423 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIR 505 N V + CT C A++++ F SRDA NI GL + L+ F F I Sbjct: 424 ND-----VKSLYCTNP-DCQAKKIKSFTLFTSRDALNIGGLSEATLEKFIAR---GF-IH 473 Query: 506 IPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 ADIF L R ++ +I N+ GFG S L +++ + + +L R ++ LG+ +G Sbjct: 474 EYADIFHLDRHEE----EIVNMEGFGKKSFDKLTEAVKRAADTTLPRVVYGLGVAGIGLA 529 Query: 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAV 625 A+ L ++ F + + + ++ L V +G+++A A ++F+ + +N V Sbjct: 530 NAKMLCRH------FQYDFHAMRCAGKEE---LTAVDGIGEVLADAWIQFFADEKNNQMV 580 Query: 626 EALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSR 683 + L++E++ E+ +E+ E V TG+++ + R + QE + G V+ ++ Sbjct: 581 DRLMEELTIEAAPKEEGERTELFEGLVFVITGSVEHFKNRKEVQEIIESRGGKVTGSVTA 640 Query: 684 KTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 KT +I D + SK +KA++LG+ ++ EEQF+ +L Sbjct: 641 KTSYLINNDAASNSSKNKKARELGIPVITEEQFIEML 677 >gi|281212695|gb|EFA86855.1| BRCT domain-containing protein [Polysphondylium pallidum PN500] Length = 1835 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 217/771 (28%), Positives = 352/771 (45%), Gaps = 102/771 (13%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG--PLNK 77 E+ + EI ++D YY S+ +I D +YD L +R + F G PLN Sbjct: 58 EILKIRDEIKKYNDSYYNKSQSLISDYQYDMLFKRLATLESQFHQRFPHSKMLGQSPLNT 117 Query: 78 IGGEM---NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIY--------RFWQKKDDNSI 126 +G + S KV HS+ LSL ++IE+L+ F RI D+ I Sbjct: 118 VGAPLPQSQSSKSKVEHSVRMLSLNNAYSIEELQTFERRIVADCLHESRGGGDGDGDHQI 177 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSAC--IRAIPTIPRVLSLNIPE- 183 FTLE K DG ++ YE GK V RGDG GEDV+ C I +PR L +P Sbjct: 178 TFTLERKHDGIALSAIYEDGKLVRLVTRGDGIIGEDVTECGNIFINTGLPREL---LPGS 234 Query: 184 -------------IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT 230 EVRGEV +SK L +N Y N RN SGILR Sbjct: 235 SGGSSNNSPYKKGTFEVRGEVVLSKQQLLEINSSRAKANLPLYKNTRNTVSGILRAGRTI 294 Query: 231 -----DITRYLNFF----VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI 281 D+ ++ +FF V G + Q E L +++ LGF + + + + Sbjct: 295 GEFDKDLIKF-DFFAYQMVSGEESPTTTAITSQSESLAELKRLGFKCGD-IVAIRSLALV 352 Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341 Y ++++ R + +DIDG+V KVD LQ++LGE R+PRW +++KF Q T L + Sbjct: 353 DRYIDQLEMERPSYKWDIDGIVIKVDSLELQRRLGETERAPRWAVAYKFGASQYLTTLNE 412 Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401 I +Q+GR+G +TPVA ++PV++ G ++ ATL+N ++K + ++R+GDRV Sbjct: 413 IVLQVGRSGKITPVAIVDPVDVHGVTVSRATLNNIQFVKRM-----------NLRLGDRV 461 Query: 402 LVKRAGEVIPKVV----------DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 +++RAG+VIP + D + N D + F P C +R K + Sbjct: 462 VIERAGDVIPYLTRYIDENNADGDQVDNREEMDDTTLA-RLFNPQCNDGKIRCPCEKKLE 520 Query: 452 LVAA-----HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 L A H C G C+ Q ++ FVS+D + G+G Q++ A I Sbjct: 521 LFTADDSADHFCMGS-ECTLQLQGQILWFVSKDGMAMTGIGPSQVEALMA----AGLISD 575 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 D+++L+ ++ ++ I GF V N+ ++I + E + +LGI G Sbjct: 576 AGDLYSLKDKRD----QMLQIPGFNKKRVDNILEAIETSKQRPFESVLCALGIPGFGKSR 631 Query: 567 ARSLAKYYLSYQNFA----QEINNIIA-------------HNNDDWLSLIRVPLVGDIIA 609 ++LAK + ++ + ++I N + H D L LV + + Sbjct: 632 CKTLAKSFKTFDQLSNTSLEDITNRVQLGDLTTYQLYSFFHPYDKAQQLGIDSLVNKLKS 691 Query: 610 QAI-VEFYQN----PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 I VE + ++ A + + +P+ K++ + KK+V +GT R Sbjct: 692 NGIGVEMNKQKSLKSKSTKAAQQSQQPSTPTSKPQNKSLLEMVAGKKVVVSGTFSIGSRD 751 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNP-GSKLEKAQQLGVKIMNEEQF 714 + + Q GA + +S TD +IV P SK+++A+ L + I++E++ Sbjct: 752 EVVTILEQNGAKSQSKVSSATDYLIVSQKPSSSKVKQAESLNIPILSEQEL 802 >gi|217032016|ref|ZP_03437517.1| hypothetical protein HPB128_187g43 [Helicobacter pylori B128] gi|216946326|gb|EEC24932.1| hypothetical protein HPB128_187g43 [Helicobacter pylori B128] Length = 458 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 160/473 (33%), Positives = 242/473 (51%), Gaps = 37/473 (7%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 +S+H YY PI+ D+ YD L + A P+ S N P K+G S Sbjct: 18 LSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPN---SIQANSPTQKVGAITTNSFN 71 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K +H + SL+ ++N +L+ ++ RI + + S F PK+DG + + Y+ GK Sbjct: 72 KNSHLMRMWSLDDVFNQSELQAWLQRILKAYP-----SASFVCSPKLDGVSLNLLYQHGK 126 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GE V+ + I IP ++ + IE+RGEV ISK DF ALN E + Sbjct: 127 LVKATTRGNGLEGELVTNNAKHIANIPHFIAYDGE--IEIRGEVIISKKDFDALNQERLN 184 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 +ANPRNAASG LR+L+ ++IT R L F G+GK S F + E L + LG Sbjct: 185 ANEPLFANPRNAASGSLRQLD-SEITKKRKLQFIPWGVGKHSLNFLSFK-ECLDFIVSLG 242 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F + I Y+ + R +DG+V VDE +QK+LG +SP++ Sbjct: 243 FSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVDELDIQKELGYTQKSPKFA 302 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 ++KF + T+++ + Q+GR+G +TPVA LEP+ I GA+I ATLHN I+ Sbjct: 303 CAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMINRATLHNYSEIE----- 357 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDL 445 ++I + DRV+V R+G+VIPK++ + + R P CPIC ++ + Sbjct: 358 ------KKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCE- 410 Query: 446 NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 L C A+ E L HF S+DA NI+GLG + ++ F+ + Sbjct: 411 --------EIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEK 455 >gi|269957188|ref|YP_003326977.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894] gi|269305869|gb|ACZ31419.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894] Length = 830 Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 164/539 (30%), Positives = 262/539 (48%), Gaps = 75/539 (13%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 L + A++ + L + YY++ P++ D+EYDA A+ A P LA P Sbjct: 11 LDEQAAQRRWAELRDLVEADQRAYYEHDSPLVSDAEYDARLHELAALEAAHPALAT---P 67 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P ++GG V H LSL+ ++++++LR + R+ R D + + E Sbjct: 68 ESPTQRVGGAAASGFTTVEHVERMLSLDNVFSVDELRDWDARVARDLGAGD---VGYLAE 124 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 KIDG I + YE G+ AA RGDG +GEDV+ I +P+ L P ++EVRGE Sbjct: 125 VKIDGLAIALLYEHGRLTRAATRGDGRTGEDVTVNALRIADVPQQLDGEGHPALVEVRGE 184 Query: 191 VYISKNDFLALND--------------------------EMIAVGRKP-YANPRNAASGI 223 ++I F LN+ + A+ R P +ANPRNAA+G Sbjct: 185 IFIPTASFTRLNELQEELRARVVEDTRARQGARFDEEKARLAALRRFPTFANPRNAAAGG 244 Query: 224 LRR-LNPTD-------ITRY--LNFFVHGLGKTSEIFAKGQYEMLQKMR-------CLGF 266 LR+ L+ D + R L +VHG+G + G++ L + G Sbjct: 245 LRQQLDKKDGLERDAGLARIESLRLYVHGIGALQ--WEAGEHAELGRQSDAYSYFATWGL 302 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 PV+ R N ++ + R + +++DG+V KVD Q++LG +R+PRW I Sbjct: 303 PVSPHNRVVNGIDAVIEMIEHFGAHRHDIEHELDGIVVKVDALPDQQRLGATSRAPRWAI 362 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++K+ ++ +TRLL I + +GRTG TP A +EPV + G+ + ATLHN+D ++ Sbjct: 363 AYKYPPEEVNTRLLAIQVGVGRTGRATPYAVMEPVLVAGSTVRQATLHNQDVVR------ 416 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP---FSFPSFCPICQSRVVR 443 + +RVGD V++++AG+VIP+++ + D P F P+ CP C + Sbjct: 417 -----AKGVRVGDVVVLRKAGDVIPEILGPVPAAAD-DGFPRHDFVMPAQCPECGT---- 466 Query: 444 DLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 L P K G + RC +C AQ R++H SR ++EGLG+ + +PA Sbjct: 467 PLRPMKEGDV--DLRCPNARSCPAQVRGRVEHIGSRGGLDVEGLGEVAAAALTQPLEPA 523 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 24/223 (10%) Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 + T R++ K + G S L D +++ + L R + SL IRHVG AR Sbjct: 597 ETMTPAERRKAGIRKDHPVYGPAK-SAQVLLDELDRAKTKDLWRQLVSLNIRHVGPVAAR 655 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 +LA ++ S ++ I A ++++ L V VG +I + ++ ++ V++ Sbjct: 656 ALADWFGS-------LDAIRAASSEE---LAAVEGVGPVIGAELQAWFDVDWHVDIVDSW 705 Query: 629 LK-------------EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + E + + +V TG+L R A+E + G Sbjct: 706 TRAGVRFATPGHPGPEAMAAQAAAGAAPQGPLAGLTVVVTGSLDGFTRDGAKEAIIAAGG 765 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +S+KTD ++VG+N GSK KA++LG+ +++E F+ LL Sbjct: 766 KSAGSVSKKTDYVVVGENAGSKAAKAEELGLPVLDEAGFVALL 808 >gi|331270899|ref|YP_004385610.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925] gi|329127291|gb|AEB77235.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925] Length = 649 Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 194/717 (27%), Positives = 348/717 (48%), Gaps = 79/717 (11%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED--- 70 +E + + L +E++ D YY + ++ D E+D F L + E Sbjct: 1 MEDKTQRVKELIKELNQASDKYYNSDETVMTDKEWD----------DKFDKLKQLEQDTG 50 Query: 71 ---PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 N P K+G E+ L KV H+IP SL K +I DL KFI N + Sbjct: 51 IILSNSPTQKVGYEVKSKLDKVVHNIPLKSLGKTKSIGDLNKFIGS----------NEVI 100 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 K DG + YE G+ + + RG+G GED++ ++ IP L ++ +++ Sbjct: 101 IM--DKGDGLTCELIYENGQLLQGSTRGNGEIGEDITHNVKTFKNIP--LQIDFKGYLKL 156 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246 GE I DF +N ++ Y+N RN +G +R+L+ R + F+ L + Sbjct: 157 SGESVILDEDFELINSKL--DDEDKYSNSRNLVAGSVRQLDSNICDKRNVKFYAFSLLEC 214 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + + E L+ + LGF ++ N+ + ++M+ + IDGLV+ Sbjct: 215 EGVDFITKEEQLEFLSRLGFETIEYIKYNNS-EDLEQVISKMQKSAYEKGFPIDGLVFAY 273 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + LG+ P I++KF +++ T+ + + Q+ RTG++ PVAR +PV I G+ Sbjct: 274 NNIEYANLLGDTLHHPLHSIAYKFYDEEYETQYITTEWQVSRTGMINPVARFKPVEIEGS 333 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ ATLHN DY + L + GD + V +A +VIPKV+ N+ + + Sbjct: 334 VVERATLHNLDYFEDL-----------KLGQGDTIKVIKANQVIPKVMS---NDTMSNTE 379 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ CP+C + L KT +++ + CSA+ + R+ H+ SR+A NI+GL Sbjct: 380 I--IPTECPVCGGKTEEKL-LKTARVLICNNP----ECSAKHISRITHYCSRNAMNIDGL 432 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ ++ F ++ DI+ L++ ++ +I NI G G S N+ ++I K + Sbjct: 433 SEKTIEKFVN----LGYLKDIDDIYKLEQYKE----EIINIDGLGTKSYNNMIEAIEKSK 484 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 LE FIF+LG+ +VG A+ L K + S I+ I+ N + + + +GD Sbjct: 485 YCKLENFIFALGVPNVGLGTAKLLVKQFKS-------IDKIM---NCNLTEIYGIEGIGD 534 Query: 607 IIAQAIVEFY-QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RH 664 ++ I ++ N +I V LLK + +++ S+++E K V TG + + R+ Sbjct: 535 VVGSEIYNYFIINTDSINLVNKLLKFI--DFEEVKESSSNKLEGKTFVITGDVHVFKNRN 592 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + + ++G V+ +S+KTD +I D + SK +KA+ L + I+ EE+F+ +++ Sbjct: 593 EVKAKIEEMGGKVTGSVSKKTDYLINNDVESTSSKNQKAKDLNIPIITEEEFVEMIK 649 >gi|298712196|emb|CBJ33067.1| DNA ligase, NAD-dependent [Ectocarpus siliculosus] Length = 1170 Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 172/468 (36%), Positives = 241/468 (51%), Gaps = 100/468 (21%) Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPE 183 + F EPKIDG + YE G+FV AA RGDG GEDV+A A+ IP L L+ Sbjct: 394 LCFVAEPKIDGLTCALLYEDGRFVRAATRGDGERGEDVTANALALGDAVIPHHLPLSSAA 453 Query: 184 II--------------------------------------EVRGEVYISKNDFLALNDEM 205 + EVRGEV++S F LN+E Sbjct: 454 AVAEGADGGAVPTREAEAAAAAAAAAERAPSSPVVPRGRFEVRGEVFMSDEAFERLNEER 513 Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRY--LNFFVHG-------------------LG 244 A G +A+ RNAA+G LR+L+P +TR L FF +G +G Sbjct: 514 EAEGLPAFASARNAAAGSLRQLDPA-VTRRRGLRFFAYGAAVGQERGRSASEEAAAAAVG 572 Query: 245 KTSEIFAKG-QYEMLQKMRCLGFPVNNGVRQANTFHG--IVSYYNEMKSIRSTLPYDIDG 301 + A G Q +L + GF V R T +V ++ + RS+L Y +DG Sbjct: 573 GDALASAFGTQDALLTALEGWGFEVAR-PRLPPTVSADELVEFHRRLARERSSLGYAVDG 631 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYK+D+ +LQ++LG AR+PRW ++HKF ++ T L +I IQ+GRTG LTPVA LEPV Sbjct: 632 VVYKLDDLALQERLGASARAPRWAVAHKFGAEEGETVLSEIVIQVGRTGALTPVAVLEPV 691 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GGA ++ ATLHN ++ L +R GDRV V+RAG+VIP+V+ + + Sbjct: 692 LLGGATVSRATLHNAREVEEL-----------GLRPGDRVKVRRAGDVIPQVLG-LASPP 739 Query: 422 HPDAQP----------FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 HPD+ F+FP+ CP C + VV++ + A RC GL+C AQ +ER Sbjct: 740 HPDSSSAGEGDDDSARFAFPTCCPACGTPVVKEEDK------AVTRCPAGLSCPAQAVER 793 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519 LKHFVS+ AF+I+GLG +L ++ A +R P D+ L R QT Sbjct: 794 LKHFVSKGAFDIQGLGPARLLELYE----AGIVRSPVDVLRL--RSQT 835 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 117/230 (50%), Gaps = 39/230 (16%) Query: 524 IENILGFGDVSVTNLYDSINKRRN-ISLERFIFSLGIRHVGAEIARSLAKYY-LSYQNF- 580 +E G+G +S N+ D++++ ++ +SL RFI+SLG+ VGA +A +A+ + ++ F Sbjct: 933 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIYSLGVPLVGARMAEVIAEEFNGEFEAFW 992 Query: 581 -----------AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR-NICAVEAL 628 + +N + + +G + +++ F + N VEAL Sbjct: 993 GALTRAGLPTPPKVVNGTGPTEPAAAEAFQGIQGMGPAMLASLLRFAKAENGNRPVVEAL 1052 Query: 629 LKEVSPSIGRHEKNVSSE------------------------IENKKLVFTGTLQKIQRH 664 EV S ++ +E K +VFTGTL +++R Sbjct: 1053 ASEVRFSARARRRHAGGGEWMVALDAVVRKGGGGGSAGGGAWVEGKTVVFTGTLTRMKRT 1112 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 + QE +LGA V+ +SRKTD+++VG NPG KLEKA++LGV++++EE++ Sbjct: 1113 ETQEAARELGARVTGSISRKTDMVVVGLNPGGKLEKARELGVEVVSEEEW 1162 Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 27/45 (60%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 I+ HD YY P + D+EYDAL+ R I AFP L RS+ P+ Sbjct: 191 IAAHDVRYYLEDVPSVTDAEYDALRLRNGEIEAAFPSLVRSDSPS 235 >gi|210617503|ref|ZP_03291606.1| hypothetical protein CLONEX_03828 [Clostridium nexile DSM 1787] gi|210149290|gb|EEA80299.1| hypothetical protein CLONEX_03828 [Clostridium nexile DSM 1787] Length = 653 Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 212/716 (29%), Positives = 352/716 (49%), Gaps = 75/716 (10%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP-DLARSEDPN 72 +EQ ++ + L Q ++ YYQ + I+ + EYD L A+ LA S Sbjct: 1 MEQKKQRMQELVQLLNEAGKAYYQGTAEIMSNYEYDKLYDELLALEKELGITLASS---- 56 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G E+ L K H P LSL+K + L++F+ QK + Sbjct: 57 -PTVNVGYEVLSELPKERHEKPMLSLDKTKEVSKLKEFLGS-----QKA-------RISW 103 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG I + Y+ G A RG+G GE ++ + +P +S E+I +RGE Sbjct: 104 KLDGLTIVLTYQNGTLQKAVTRGNGEVGEVITNNAKVFKNLPLHISYQ-GELI-LRGEAI 161 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI- 249 I DF +N+E+ V K Y NPRN SG +R+LN +IT R + FF L K ++ Sbjct: 162 IGYRDFEKINEEIEDVDAK-YKNPRNLCSGSVRQLN-NEITAKRNVKFFAFSLVKADDVD 219 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 F + ++ ++ GF V G A T V +++E K + P D GLV D+ Sbjct: 220 FKNSRIYQMEWLKEQGFEVVEGYEVTAGTIEERVKFFSE-KIADNDFPSD--GLVLVYDD 276 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + + LG ++ PR + K+A++ T LL+I+ RTG++ PVA EPV + G + Sbjct: 277 IAYGQSLGTTSKFPRDSFAFKWADEIRETTLLEIEWSPSRTGLINPVAIFEPVELEGTTV 336 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A++HN ++ L ++ +GD + V +A +IP++ + + D Sbjct: 337 SRASVHNISIMEEL-----------ELGIGDTIAVYKANMIIPQIAENLTRSGVKD---- 381 Query: 429 SFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P CP+C + +R ++ A CT C A+ L+ FVSRDA NI+GL Sbjct: 382 -IPEECPVCHGKTEIRKVSD-----AKALYCTNE-ECGAKHLKSFALFVSRDALNIDGLS 434 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + L+ F F I +DIF L++ + I+++ GFG+ S NL SI K R Sbjct: 435 EATLEKFIAK---GF-INHYSDIFHLEQYKDA----IKSMEGFGEKSYVNLQKSIEKARV 486 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 +L + I+SLGI ++G A+ + K NF E + H ++ LS + +G + Sbjct: 487 TTLPKLIYSLGIANIGLANAKVICKEL----NFDIE---KMLHVTEEELS--EISGIGPV 537 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QRHK 665 IA+A V ++ +++ LL E+ I + E++ ++I EN V TG+++ R++ Sbjct: 538 IAKAFVSYFAKEQHVEEFRRLLTEL--EIPKEEESKEAQIFENMNFVITGSVEHFANRNE 595 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G V+ ++ KT+ +I D + SK +KA++LGV I++EE FL +L+ Sbjct: 596 VKAVIESKGGKVTGSVTSKTNYLINNDIESTSSKNKKARELGVPIISEETFLKMLE 651 >gi|239624075|ref|ZP_04667106.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522106|gb|EEQ61972.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 650 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 210/720 (29%), Positives = 348/720 (48%), Gaps = 89/720 (12%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 I++ ++ +S+L Q YYQ S+ I+ + EYD L + +L E G Sbjct: 5 IQRMKELVSTLRQ----AGKAYYQESREIMSNFEYDRL----------YDELCSLEKETG 50 Query: 74 ------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P ++G E+ L K TH P LSL+K ++EDL+ ++ D + Sbjct: 51 IIMSGSPTQRVGYEVLSELPKETHESPMLSLDKTKSVEDLQSWL---------GDQKGL- 100 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 L K+DG I + YE G+ A RG+G GE ++ R +P L+++ + + Sbjct: 101 --LSWKMDGLTIVLTYEGGRLTKAVTRGNGEIGEVITPNARVFANVP--LNISYEGQLIL 156 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGK 245 RGE I+ +DF +N+E+ V K Y NPRN SG +R+LN + IT R ++F L + Sbjct: 157 RGEAVITYSDFKRINEEIEDVDAK-YKNPRNLCSGSVRQLN-SQITAERNVHFEAFALVR 214 Query: 246 TSEI-FAKGQYEMLQKMRCLGFPVNN--GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + F + + +R GF V + V N + + ++ + +P DGL Sbjct: 215 ADGVDFGNSRKRQFEWLREQGFEVVHYEEVTAENLPEAVNGFAEAVEG--NDVPS--DGL 270 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V D+ + + LG A+ PR I+ K+ ++ TRL I+ RTG++ PVA +PV Sbjct: 271 VLTFDDIAYGEALGRTAKFPRNSIAFKWQDEIRETRLDYIEWSASRTGLINPVAVFDPVE 330 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ A++HN ++ L D+ GD + V +A +IP++ D + Sbjct: 331 LEGTTVSRASVHNLSIMEAL-----------DLGQGDTITVYKANMIIPQIADNLTRSGV 379 Query: 423 PDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 D P CP+C ++ +N V + CT C A++++ FVSRDA Sbjct: 380 RD-----IPKECPVCGGETQIKQMND-----VKSLYCTNP-DCQAKKIKSFTLFVSRDAL 428 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI+GL + L+ F A I ADIF L+ + I + GFG S NL S Sbjct: 429 NIDGLSEATLEKFIG----AGFIHEYADIFHLEEHKDA----IVEMEGFGQKSYDNLIAS 480 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I N +L R ++ LGI +G A+ L + + S +F + + H D L+ V Sbjct: 481 IKTASNTTLPRMVYGLGIAGIGLANAKMLCREFKS--DFEK-----MRHAQAD--ELVAV 531 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G ++AQA ++++ + +N AV+ LLKE++ + E + + E V TG+++ Sbjct: 532 DGIGGVLAQAWMDYFASEKNNLAVDHLLKELTIEAEQVE-TMDAIFEGMTFVITGSVEHF 590 Query: 662 -QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + QE + G + ++ KT +I D + SK +KA+ LGV I++EE+FL +L Sbjct: 591 ANRKELQEVIESRGGKATGSVTAKTTYLINNDVASNSSKNKKAKDLGVPIISEEEFLRML 650 >gi|255067693|ref|ZP_05319548.1| DNA ligase, NAD-dependent [Neisseria sicca ATCC 29256] gi|255048034|gb|EET43498.1| DNA ligase, NAD-dependent [Neisseria sicca ATCC 29256] Length = 543 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 173/562 (30%), Positives = 263/562 (46%), Gaps = 151/562 (26%) Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347 M+ R +LPY+IDG+V KV+ + Q++LG +R+PRW I+HKF ++A T + ID+QIG Sbjct: 1 MQQKRPSLPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIG 60 Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 RTG +TPVARL+PV +GG +TNATLHN+D + +D+RVGD V+V+RAG Sbjct: 61 RTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAG 109 Query: 408 EVIPKVVDIIVNERH---------------------------------PDAQPFSFPSFC 434 +VIP+VV +I R P +P+ P+ C Sbjct: 110 DVIPEVVRVIFERRPMQETAVSNVSDGLKYQQDDLFAETPSTNQTQSVPLHKPYRLPTHC 169 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC+S + R+ G+ VA RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ Sbjct: 170 PICRSEIERE----EGEAVA--RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGQKQIEQL 223 Query: 495 FKSEDPA--FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT---------------- 536 ++D F+ DI TLQ+ ++T+ K+ + GD Sbjct: 224 V-AQDLVRHFADLYRLDIPTLQKMKETAD-KVSSENENGDAETVSDDLSELNTQNGKKQP 281 Query: 537 -----NLYDSINKRRNISLERFIFSLGIRHV----------------------------- 562 N+ I + L RF+F+LGIRHV Sbjct: 282 TKWAENILAGIEASKTPELTRFLFALGIRHVGERTAKTLAQAFGSLEHVRRAPEPILACL 341 Query: 563 ---GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP----------------- 602 G +ARS+A ++ A I+ ++A + +P Sbjct: 342 PDIGTVVARSIAHFFAQDAQQAM-IDELLAAGVAPQTQAVTIPPARHAEPQRWIARLPGF 400 Query: 603 LVGDIIAQAIVEF-----------------YQNPRNICAVEALLKEV-----SPSIGRHE 640 + + AQA+ E +Q R+ ALL+ + S E Sbjct: 401 KISENKAQALWELAGKSIEGLQTDKALPADWQTWRSETQNAALLENLKTFFAQTSSENQE 460 Query: 641 KNVSSE----IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS 696 VS + + K V TGTL ++R +AQ + G VS +S+KTD ++ G+ GS Sbjct: 461 ATVSDDLNEAVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKTDYVVAGEAAGS 520 Query: 697 KLEKAQQLGVKIMNEEQFLFLL 718 KLEKA LGV +++EE+ L +L Sbjct: 521 KLEKANALGVAVLSEEELLTML 542 >gi|302538378|ref|ZP_07290720.1| DNA ligase, NAD-dependent [Streptomyces sp. C] gi|302447273|gb|EFL19089.1| DNA ligase, NAD-dependent [Streptomyces sp. C] Length = 699 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 190/698 (27%), Positives = 305/698 (43%), Gaps = 68/698 (9%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY + D+ +D L A A+P+ DP P K+ G ++ +V H+ Sbjct: 42 AYYGSGGSPLDDASFDLLVSLIQAYEAAYPE---HVDPASPTGKVAGGA-VAGGEVAHTA 97 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 LSL + +DL + + R + +EPK+DG + RY G+ V Sbjct: 98 AMLSLANAFGPQDLLDWEASLVRRLGGPVTGG--YAVEPKLDGASLAARYRAGRLVQLVT 155 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG SGEDVS I I +P L L + EVRGEV ++ F N G P+ Sbjct: 156 RGDGTSGEDVSHAIGTIVGLP--LELAVEATFEVRGEVLLTAEQFERANRTRAEHGAGPF 213 Query: 214 ANPRNAASGILR---RLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF---- 266 +N RN A+G LR R +++ + V G T+ + E++ + G Sbjct: 214 SNARNGAAGTLRAKGRAYTVEMSFWAFAAVELEGGTA-LPGTTHSEVMAYVAAAGVRTAA 272 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 G+ A T G + + +R+ LP+ IDG+V K+D + Q G +R P W Sbjct: 273 DTAAGLTVAATAAGAQEQVDRIAGMRAGLPFGIDGVVVKLDSLAEQAAAGTGSRHPHWAT 332 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++K A + TRLLD+ +GRTG+L P A LEPV + G+++ +ATLHN I Sbjct: 333 AYKLAAVERRTRLLDVTWAVGRTGVLAPTAVLEPVEVDGSVVRHATLHNPADIA------ 386 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 R + +GD V V +AG+VIP+V +V R +P P CP CQ + R Sbjct: 387 -----RRGLLIGDTVTVYKAGDVIPRVEAPVVELRTGAERPVVVPEVCPGCQGEIDRSQE 441 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 RC C ++ + + RD +I+GLG++ + + E +R Sbjct: 442 R--------WRCAQPADCG--RIAAILYAAGRDQLDIDGLGERYVRALVEEE----GVRD 487 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 AD+FTL E L + I + + L R +LG+ G + Sbjct: 488 VADLFTLDPAALARAAGSEK-------RAVKLAERIEAAKALPLSRVFCALGVVGTGRGM 540 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ--NPRNICA 624 +R +A+++ + + ++ V LVG+ A AIV P Sbjct: 541 SRRIARHFGTMEAVRAADAA----------AMTAVELVGETKAAAIVAQVAELGPVIDKL 590 Query: 625 VEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKI-----QRHKAQEYVTQLGAV 676 A ++ V P + + + + + +V TG + R + +E + + G Sbjct: 591 AAAGVRPVEPQVPAAAPAGEAEAGPLAGQNVVVTGKMTGALAAYDTRDRVRELIERAGGR 650 Query: 677 VSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 S +S KT +++ G+ GSK+ KA+ G++I+ EE F Sbjct: 651 SSGSISGKTTLLVAGEKAGSKVAKAEAAGIEILGEEAF 688 >gi|154499783|ref|ZP_02037821.1| hypothetical protein BACCAP_03440 [Bacteroides capillosus ATCC 29799] gi|150271381|gb|EDM98638.1| hypothetical protein BACCAP_03440 [Bacteroides capillosus ATCC 29799] Length = 673 Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 197/701 (28%), Positives = 318/701 (45%), Gaps = 76/701 (10%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY + P + D+ YD L + A + N P N +G L K HSIP Sbjct: 23 YYNLNSPSVSDAVYDRLFEELQELESA----TGVQMSNSPTNTVGYPAVSKLEKTNHSIP 78 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+K+ N E+L +F+ ++ + F L K+DG I + YE GK V AA R Sbjct: 79 LLSLDKVKNTEELCRFM----------GEHQVMFML--KLDGLTIKLTYEGGKLVEAATR 126 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE V+ RAI IP ++ + + V GE +I +DF L ++ KPY Sbjct: 127 GDGDVGEIVTHNTRAIGGIPE--NIQYEDRLVVTGEAFIRPSDFEQLKTTLVDSDGKPYK 184 Query: 215 NPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGV 272 N RN A+G +R + + R L F + + E + + E L+ +R LGF P V Sbjct: 185 NGRNLAAGSVRLFDAGACLGRRLMFMPFNVLEGMEELPR-KSERLKALRPLGFLPCKYMV 243 Query: 273 R-----QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 Q T GI ++K + IDG+V ++ +L K G + ++ Sbjct: 244 TKRPLTQKETEDGI----RQLKEYAADADIPIDGIVITYNDIALSKSCGRTGHHYKDGLA 299 Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387 KF + T+L I+ GRTG + PVA EPV I G ++ A+LHN +I+ L Sbjct: 300 FKFEDDLFQTKLQTIEWTPGRTGEIAPVAIFEPVEIDGCEVSRASLHNLSFIEDL----- 354 Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF----PSFCPICQSRVVR 443 ++ G R+LV + +IP V E + D FS P CP C Sbjct: 355 ------ELAPGCRILVSKRNMIIPHV------EENLDRGNFSMDAVIPHQCPCCGEPTRI 402 Query: 444 DLNPKTG-----KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 G +++ C AC ++L++ HFVS+ A NIEGL + L+ Sbjct: 403 HETSGRGENGEERVIKTLFCDNA-ACETRRLKQFVHFVSKKAMNIEGLSEGTLEKLIGRG 461 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I DI+ L + + +I + GFG+ S L+D+I + R+ + ER++ ++ Sbjct: 462 ----WIHSYLDIYRLDQHRN----EIIRMDGFGEKSWQRLWDAIQQSRSTTFERYVIAMD 513 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I VG ++ L + + E + + D ++P G+ + I E++ Sbjct: 514 IPMVGNTASKVLCR---EFHGSLDEFRDAVYGGYD----FRQLPDFGETLHNNIQEWFNK 566 Query: 619 PRNICAVEAL--LKEVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLG 674 N C E L + + + + ++ + K +V TG ++ R + + LG Sbjct: 567 EENFCIWEELQMMMNIQKPVETDNQTINRDNSFSGKTIVVTGKVEPYTRDEMNSLIASLG 626 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 AV + ++RKTD ++ G+ GSKL KA++L + ++ E+F Sbjct: 627 AVAGSSVTRKTDYLVCGEKAGSKLSKARELDIPVLTPEEFF 667 >gi|154484656|ref|ZP_02027104.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC 27560] gi|149734504|gb|EDM50421.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC 27560] Length = 655 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 202/689 (29%), Positives = 322/689 (46%), Gaps = 69/689 (10%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YYQ + I+ + EYD L + + N P +G ++ L K H+ Sbjct: 20 AYYQEANEIMTNFEYDKLYDELVGLEKETGMVL----SNSPTVNVGYQVVSQLPKEQHNS 75 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL+K + L F D + K+DG + + YE G+ V A Sbjct: 76 PMLSLDKTKEVGALADF----------AGDRKCLLSW--KMDGLTVVLTYENGELVKAVT 123 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RG+G GE ++ + IP +S+ + +RGE I +DF +N E+ K Y Sbjct: 124 RGNGLVGEVITNNAKTFKNIP--ISIPYKGRLTLRGEAIIKYSDFEQINREIEDADSK-Y 180 Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPV-NN 270 NPRN SG +R+LN R +NF L ++ F + + M GF V Sbjct: 181 KNPRNLCSGSVRQLNSQVTAERNVNFVAFALINADDVDFDNSIEQQYKWMESQGFQVVEY 240 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 V N+ V Y+ T Y DGLV D+ LG A+ PR I+ K+ Sbjct: 241 RVVTRNSMEDAVKYF---AGKIQTYDYPSDGLVLMFDDIEYGLSLGTTAKFPRNGIAFKW 297 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 ++QA T L I+ RTG++ PVA EPV + G ++ A++HN ++ L Sbjct: 298 EDEQAETTLKYIEWSPSRTGLINPVAVFEPVELEGTTVSRASVHNISIMEEL-------- 349 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 ++ GDR+ V +A +IP++ + + D P CP+C ++ + G Sbjct: 350 ---ELGSGDRIKVYKANMIIPQISENLTKSGIDD-----LPKECPVCGH--ATEVKAENG 399 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 + C C A+ ++ FVSR+ NI+GL ++ L+ F A I+ ADI Sbjct: 400 --IKTLYCPNS-QCPAKHVKLFTLFVSRNGMNIDGLSEETLEKFID----AGYIKEFADI 452 Query: 511 FTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 F L R + +I GFG S NL DS+ K RN+ L I+SLGI ++G+ A+ + Sbjct: 453 FHLDRYYE----EIVATPGFGQKSYDNLMDSVEKARNVELSALIYSLGIPNIGSANAKLI 508 Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 K + NNI N LI + +G+I+A+ +++ + NI ++ LLK Sbjct: 509 CKAF---------NNNIEKIRNASVEELIEIDGIGEIMAEKFCQYFADEDNIKKLDNLLK 559 Query: 631 EVSPSIGRHEKNVSSE-IENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDII 688 EV +I E+N + + ++ V TG+++ R++ + Y+ + G V+ +S KT+ + Sbjct: 560 EV--NIAEPEENTTPQNMDGLTFVITGSVEHFANRNELKSYIEKHGGKVTGSVSAKTNYL 617 Query: 689 IVGD--NPGSKLEKAQQLGVKIMNEEQFL 715 I D + SK +KA+QLGV+I+ EE FL Sbjct: 618 INNDAMSASSKNKKAKQLGVEIVTEEVFL 646 >gi|160895209|ref|ZP_02075981.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50] gi|156863088|gb|EDO56519.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50] Length = 653 Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 196/713 (27%), Positives = 330/713 (46%), Gaps = 78/713 (10%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG-- 73 + R + L ++++ YYQ I+ + EYDAL + +L E G Sbjct: 2 EKRDRIKELVEKLNEASKKYYQEDTEIMSNLEYDAL----------YDELVELEKETGIV 51 Query: 74 ----PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P +G E+ L K H P LSL+K ++E L W I + Sbjct: 52 MSNSPTVHVGYEIVSELPKEVHEHPMLSLDKTKSVEALAA--------WLGTHQGVISW- 102 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 K+DG + + YE G V A RG+G GE ++ R IP+ + + +RG Sbjct: 103 ---KLDGLTVVLTYENGTLVKAVTRGNGLEGEVITNNARVFANIPKEIPYKGK--LTIRG 157 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247 E I +DF +N E IA Y NPRN SG +R+LN IT R ++FF L Sbjct: 158 EAVIKYSDFEKIN-EQIADADAKYKNPRNLCSGSVRQLN-NRITKERNVHFFAFNLVDGE 215 Query: 248 EIFAKGQYEM-LQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 ++ K + L + GF V + + A+ V+ + E ++ P D GLV Sbjct: 216 DVDFKNSFSYELDWLEQQGFDVVEHYLIDADKLPERVAQFAEQIE-KNDFPSD--GLVLV 272 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 +++ + K LG A+ PR ++ K+A++QA T L ++ RTG++ PVA +PV++ G Sbjct: 273 LEDLAYGKSLGRTAKFPRDSMAFKWADEQAVTHLQYVEWSPSRTGLINPVAVFDPVSLEG 332 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + A++HN ++ L + +GD + V +A +IP++ E H + Sbjct: 333 TTVGRASIHNVSILRSL-----------QLGIGDEISVYKANMIIPQIA-----ENHTRS 376 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP C + V CT C A++L+ HFVSR+A NI+G Sbjct: 377 GNVPIPESCPACGGLTKIVTEGEGVDQVETLYCTNEF-CPAKKLKSFAHFVSRNAMNIDG 435 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 L + +D F + + D++ + R ++ +I + GFG+ S L +++ Sbjct: 436 LSEATIDKFIEQG----YLDHLDDLYHMNRHEE----EIVELEGFGEKSYAKLIQAVDTS 487 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R+ ++ RF++ LGI VG A+ + K++ NN+ + D + + +G Sbjct: 488 RHTTMNRFVYGLGIPGVGDATAKLICKHFK---------NNLDQIMHADVEAYTEIDGIG 538 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRH 664 +IA+ IV +++NP N ++ LL E+ + V + V TG+L++ R Sbjct: 539 TVIAEEIVRYFKNPSNCAIIDKLLHEL--EFEAETETVPQTLAGITFVITGSLEQFANRD 596 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715 + ++Y+ G V+ +S KT ++ D + SK +KAQ LG+ I++E QFL Sbjct: 597 EMKQYIEDRGGKVAGSVSSKTGYLVNNDVTSTSSKNKKAQSLGIPIISETQFL 649 >gi|166032192|ref|ZP_02235021.1| hypothetical protein DORFOR_01895 [Dorea formicigenerans ATCC 27755] gi|166027915|gb|EDR46672.1| hypothetical protein DORFOR_01895 [Dorea formicigenerans ATCC 27755] Length = 690 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 211/736 (28%), Positives = 330/736 (44%), Gaps = 112/736 (15%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 K + +L ++++ + YY P++ D+EYD L F +L E+ N Sbjct: 30 KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRL----------FDELKELEEQTGFILSN 79 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G L KVTH IP LSLEK K I+ + F + ++ + F L Sbjct: 80 SPTQTVGYYPVSELAKVTHPIPLLSLEKT-------KLISELLDFMKGQE---VLFML-- 127 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGE 190 K+DG + YE G+ + A+ RGDG GED++ I A +P L IP E + + GE Sbjct: 128 KLDGLTTKLIYEDGRLIQASTRGDGEVGEDITHNIPAFLNVP----LTIPHKERLVITGE 183 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI----TRYLNFFVHGLGKT 246 +I NDF L D + KPY N RN ASG +R L+P + R+L F V G Sbjct: 184 SFIPTNDFERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLE-GME 242 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYY-----NEMKSIRSTLPYDIDG 301 F + L+ + LGF + T G+ Y E+ S + L IDG Sbjct: 243 DVPFPDSRACKLEGLTHLGFGYCPFFSISGT--GLSKEYAEKFIQELVSTAANLHLPIDG 300 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V D S K G+ + +++KF + T L +I+ R G + PV + V Sbjct: 301 IVMIFDSLSYSKSCGKTGHHYKDGLAYKFEDDTYETFLREIEWTPTRFGEIAPVGIFDTV 360 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 I G ++ A+LHN +IK L+ + G R+LV + +IP + D + R Sbjct: 361 EIDGCDVSRASLHNLTFIKNLE-----------LVPGCRILVSKRNMIIPHIEDNLDRGR 409 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKT--GKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + D P CP C S+ R + KT G+ V C C +Q R HF S+ Sbjct: 410 YTDITP----PVCPCCGSKT-RTYSRKTSDGRTVETLHCDNP-QCDSQITRRFVHFASKK 463 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NIEGL + L+ F + DI+ L+ ++ I + G+G+ S L+ Sbjct: 464 AMNIEGLSEATLEKFLN----LGYLHSFQDIYHLEEHRE----DIVALDGYGEKSFDRLW 515 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY-----------LSYQNFAQ--EINN 586 +SIN R S R++ S+ I +G +R L + + +F Q + Sbjct: 516 ESINASRRTSFVRYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQAAVGDYDFTQLEDFGE 575 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 I+ HN W + +A ++ ++N +N E R E+ + ++ Sbjct: 576 ILNHNIHSWFA-----------DEANLDLWKNLQNEFTFEQ----------RKEETIMTK 614 Query: 647 IENK----KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 ENK +V TG L+ R + + +LGA + +++KTD +I G+ GSKL KAQ Sbjct: 615 -ENKFTGCTIVATGKLEHFTRDGINDKILELGAKPGSSVTKKTDYLICGEKAGSKLAKAQ 673 Query: 703 QLGVKIMNEEQFLFLL 718 LG+ I+ E +FL ++ Sbjct: 674 SLGIPILTEAEFLEMI 689 >gi|315652468|ref|ZP_07905453.1| DNA ligase [Eubacterium saburreum DSM 3986] gi|315485257|gb|EFU75654.1| DNA ligase [Eubacterium saburreum DSM 3986] Length = 649 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 206/712 (28%), Positives = 346/712 (48%), Gaps = 76/712 (10%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 RK + L + ++ YY + I+ + EYD L ++ ++ S N P Sbjct: 4 RKRIKELVEILNKAAKSYYVDAVEIMPNIEYDKLYDELVSLEKE-TNVVLS---NSPTQN 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G E L K H P LSL+K ++ +L ++ DN + K+DG Sbjct: 60 VGYETASELPKKAHESPMLSLDKTKSVAELEDWLG----------DNKALLSW--KMDGL 107 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I + Y G+ V A RG+G GE ++ + +P L + + +RGE I +D Sbjct: 108 TIVLTYRGGELVEAVTRGNGIIGEVITNNAKNFQNVP--LRIEYKGELILRGEAVIKYSD 165 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFVHGLGKTSEI-FAK 252 F +ND + + Y NPRN SG +R+LNP +TR Y N F + + I F Sbjct: 166 FKRINDSITDADAR-YKNPRNLCSGSVRQLNPA-VTRERKVYFNVF--NVVRADNIDFEN 221 Query: 253 GQYEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + + + GF V ++A+ I + E K + +P D GLV +D+ + Sbjct: 222 SKAKQFEWAKNEGFDVVEYKFTQRASLADDIAKF--ESKIAENDIPSD--GLVLLLDDIA 277 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 L ++LG ++ PR ++ K+++++ +T+L I+ RTG++ PVA EPV + G ++ Sbjct: 278 LGERLGSTSKFPRNAMAFKWSDERQTTKLKYIEWSPSRTGLINPVAVFEPVELEGTTVSR 337 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 A+LHN + L M G VGD + V +A +IP+V E + Sbjct: 338 ASLHNVSIFEEL------MLG-----VGDEISVYKANMIIPQVY-----ENLTKSNTEKI 381 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C RD K CT C + +++ SRDA NI+GL + Sbjct: 382 PKICPACG----RDTTIKKDNESKVLLCTNP-DCQIKHIKQYALMASRDALNIDGLSEST 436 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L+ F F I+ +D+F L + + +I N+ GFG S L ++++ +N ++ Sbjct: 437 LEKFLS---KGF-IKSDSDLFRLDKFKD----EIINMEGFGKRSYEKLIAALDEAKNTTV 488 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF++SLGI +G+ A+ +AKY F +I+ II+ + DD L + +G+++A Sbjct: 489 SRFLYSLGIAGIGSANAKMIAKY------FDNDIDRIISASKDD---LRDIEGIGEVLAG 539 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEY 669 +I +F+++ +NI VE+L K + E + K V TG+L R++ +E Sbjct: 540 SIEDFFKSEKNIENVESLRKIL--KFETEESGGGDKFAGKVFVITGSLTHFSNRNEMKEL 597 Query: 670 VTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + G VS +S KT+ +I D + SK +KA++LGV+I++EE FL LL+ Sbjct: 598 IEKNGGKVSGSVSSKTNFLINNDTGSNSSKNKKAKELGVEIISEEDFLKLLE 649 >gi|153853203|ref|ZP_01994612.1| hypothetical protein DORLON_00597 [Dorea longicatena DSM 13814] gi|149753989|gb|EDM63920.1| hypothetical protein DORLON_00597 [Dorea longicatena DSM 13814] Length = 692 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 209/732 (28%), Positives = 326/732 (44%), Gaps = 102/732 (13%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 K + +L ++++ + YY P++ D+EYD L F L + E+ N Sbjct: 30 KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRL----------FDKLKKLEEQTGFILSN 79 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G L KVTH P LSLEK K I+ + F + ++ + F L Sbjct: 80 SPTQTVGYYPVSELAKVTHPTPLLSLEKT-------KLISELLDFMKGQE---VLFML-- 127 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGE 190 K+DG + YE GK + A+ RGDG GED++ I A +P L IP E + + GE Sbjct: 128 KLDGLTTKLIYEDGKLIQASTRGDGEVGEDITHNIPAFLNVP----LTIPHKERLVITGE 183 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL--GKTS 247 +I NDF L D + KPY N RN ASG +R L+P + I R + F + G Sbjct: 184 SFIPTNDFERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLEGMED 243 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYY-----NEMKSIRSTLPYDIDGL 302 F + L+ + LGF + T G+ Y E+ S + L IDG+ Sbjct: 244 VPFPDSRACKLEGLTHLGFGYCPFFSISGT--GLSREYAEKFIQELVSTAANLHLPIDGI 301 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V D S K G+ + +++KF T L +I+ R G + PV + V Sbjct: 302 VMIFDSLSYSKSCGKTGHHYKDGLAYKFENDTYETVLREIEWTPTRFGEIAPVGIFDTVE 361 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 I G ++ A+LHN +IK L+ + G R+LV + +IP + D + R+ Sbjct: 362 IDGCDVSRASLHNLTFIKNLE-----------LVPGCRILVSKRNMIIPHIEDNLDRGRY 410 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKT--GKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 D P CP C S+ R + KT G+ V C C +Q R HF S+ A Sbjct: 411 TDITP----PVCPCCGSKT-RTYSRKTSDGRTVETLHCNNP-QCDSQITRRFVHFASKKA 464 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 NIEGL + L+ F + DI+ L+ ++ +I + G+G+ S L++ Sbjct: 465 MNIEGLSEATLEKFLN----LGYLHSFQDIYHLEEHRE----EIVALDGYGEKSFDRLWE 516 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYY-----------LSYQNFAQ--EINNI 587 SIN R S R++ S+ I +G +R L + + +F Q + I Sbjct: 517 SINASRRTSFVRYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQAAVGDYDFTQLEDFGKI 576 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 + HN W + +A ++ ++N +N E +E P + + K I Sbjct: 577 LNHNIHSWFA-----------DEANLDLWKNLQNEFTFEQRKEE--PIMTKENKFTGCTI 623 Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVK 707 V TG L+ R + + +LGA + +++KTD +I G+ GSKL KAQ LG+ Sbjct: 624 -----VATGKLEHFTRDGINDKILELGAKPGSSVTKKTDYLICGEKAGSKLAKAQSLGIP 678 Query: 708 IMNEEQFLFLLQ 719 I+ E +FL ++ Sbjct: 679 ILTEAEFLEMIH 690 >gi|160935782|ref|ZP_02083157.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC BAA-613] gi|158441526|gb|EDP19236.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC BAA-613] Length = 651 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 212/730 (29%), Positives = 344/730 (47%), Gaps = 111/730 (15%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG-- 73 Q KEL S+ +E YYQ S+ I+ + EYD L + +L E G Sbjct: 6 QRMKELVSILREAG---KAYYQESREIMSNFEYDKL----------YDELVSLEKETGVT 52 Query: 74 ----PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P ++G E+ L K TH P LSL+K ++EDL++++ D + Sbjct: 53 LSGSPSQQVGYEILSELPKETHGSPMLSLDKTKSVEDLQEWLG---------DQKGL--- 100 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 L K+DG I + YE+G A RG+G GE ++ R IP L+++ + +RG Sbjct: 101 LSWKMDGLTIVLTYEEGTLAKAVTRGNGEIGEVITPNARVFANIP--LNISYQGQLILRG 158 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247 E I+ +DF +N + V K Y NPRN SG +R+LN + IT R ++F L K Sbjct: 159 EAVITYSDFERINSGIEDVDAK-YKNPRNLCSGSVRQLN-SQITAERNVHFEAFALVKAD 216 Query: 248 EI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI------- 299 + F + + ++ GF V +Y E+ + ++LP + Sbjct: 217 GVDFHNSRKAQFEWLKGQGFEV--------------VHYEEVDA--ASLPASVEGFAKAV 260 Query: 300 -------DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352 DGLV D+ + + LG A+ PR I+ K+ ++ T L I+ RTG++ Sbjct: 261 EGNDIPSDGLVLTYDDIAYGESLGRTAKFPRNSIAFKWKDEIRETALSYIEWSASRTGLI 320 Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412 PVA EPV + G ++ A++HN ++GL ++ VGD + V +A +IP+ Sbjct: 321 NPVAVFEPVELEGTTVSRASVHNLSIMEGL-----------ELGVGDTITVYKANMIIPQ 369 Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 + + + D P CP+C R +R +N V + CT C A++++ Sbjct: 370 IEENLTRSGVKD-----IPEECPVCGGRTEIRKVND-----VKSLYCTNP-DCQAKKIKS 418 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 FVSRDA NI+GL + L+ F + A I ADIF L+ + I + G G Sbjct: 419 FTLFVSRDALNIDGLSEATLEKFIQ----AGFIHEYADIFHLEEHRDA----IVEMEGLG 470 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 S NL SI N +L R ++ LGI +G A+ L + F + + + H Sbjct: 471 QKSYDNLIASIKTASNTTLPRMVYGLGIAGIGLANAKMLCR------EFKYDFDK-MRHA 523 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 ++ L+ V +G ++AQA ++++ RN V+ LL E++ + E + E Sbjct: 524 GEE--ELVAVDGIGGVLAQAWMDYFALGRNNQMVDRLLAELNIEKEQPETAGEAVFEGMN 581 Query: 652 LVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKI 708 V TG+++ R + QE + G V+ ++ KT +I D + SK +KA++LGV I Sbjct: 582 FVITGSVEHFANRKELQELIESKGGKVTGSVTAKTAYLINNDAASNSSKNKKAKELGVPI 641 Query: 709 MNEEQFLFLL 718 ++EE+FL +L Sbjct: 642 ISEEEFLRML 651 >gi|260587930|ref|ZP_05853843.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583] gi|331084525|ref|ZP_08333626.1| DNA ligase [Lachnospiraceae bacterium 6_1_63FAA] gi|260541457|gb|EEX22026.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583] gi|330401233|gb|EGG80824.1| DNA ligase [Lachnospiraceae bacterium 6_1_63FAA] Length = 650 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 210/712 (29%), Positives = 344/712 (48%), Gaps = 89/712 (12%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73 KEL L E S YYQ + I+ + EYD L + +L + E G Sbjct: 8 KELLKLLTEAS---KAYYQEDREIMSNFEYDKL----------YDELVQLERETGVTLAG 54 Query: 74 -PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G E L K H P LSL+K +IE LR FI QK L Sbjct: 55 SPTASVGYEALDELPKEAHESPMLSLDKTKDIEALRAFIGE-----QKS-------LLSW 102 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG I + Y +GK A RG+G GE ++ + IP ++ E++ +RGE Sbjct: 103 KLDGLTIVLTYHEGKLQKAVTRGNGTVGEVITGNAKVFKNIPLQIAYQ-GELV-LRGEAI 160 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI- 249 I+ +DF +N ++ V K Y NPRN SG +R+LN +IT R +NF+ L K + Sbjct: 161 ITYSDFEKINAQIEDVDAK-YKNPRNLCSGSVRQLN-NEITAKRNVNFYAFSLVKAEGVD 218 Query: 250 FAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 F + + ++ GF V V T + Y++ S ++ P D GLV D+ Sbjct: 219 FQNSREQQFCWLKEQGFDVVEYRVVTGETLDEAMDYFSNQVS-KNDFPSD--GLVVLYDD 275 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + + LG A+ PR + K+ ++ T L +I+ RTG++ PVA EP+ + G + Sbjct: 276 IAYGESLGSTAKFPRNAYAFKWKDEIRETVLKEIEWSASRTGLINPVAIFEPIELEGTTV 335 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A++HN +K L + +GD++ V +A +IP++ + + + Sbjct: 336 SRASVHNISIMKEL-----------QLGIGDKIQVYKANMIIPQIAENLTRSGN-----L 379 Query: 429 SFPSFCPIC--QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+C ++RV+ KT ++ A + C C A++++ FVSRDA NI+GL Sbjct: 380 EIPKICPVCKKEARVI-----KTNEVEALY-CMNE-ECQAKKIKSFTLFVSRDAMNIDGL 432 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 + L+ F F IR DIF +++ + +I + GFG S NL S+ K + Sbjct: 433 SEATLEKFILK---GF-IRDFGDIFEIEKYKD----EILEMEGFGQKSYENLIASLEKAK 484 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L R ++SLGI ++G LA L + +I +IA N ++ S + +G Sbjct: 485 HTTLPRVLYSLGIANIG------LANAKLICKELQYDIEKMIAANEEEISS---IEGIGP 535 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHK 665 +IA+A E++ N N+ LL + E+N+S +E K+ V TG++ R + Sbjct: 536 VIAKAYTEYFANEENLKKFRHLLSHLELEEVTREENLS--LEGKQFVITGSVVHFANRAQ 593 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFL 715 +E + + G V+ ++ KT +I D SK +KA++LG+ I++E+ F+ Sbjct: 594 LKEEIEKRGGKVTGSVTSKTHYLINNDTTSNSSKNKKAKELGIPILSEDDFM 645 >gi|225569253|ref|ZP_03778278.1| hypothetical protein CLOHYLEM_05335 [Clostridium hylemonae DSM 15053] gi|225162052|gb|EEG74671.1| hypothetical protein CLOHYLEM_05335 [Clostridium hylemonae DSM 15053] Length = 648 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 205/709 (28%), Positives = 336/709 (47%), Gaps = 73/709 (10%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + L ++++ YYQ ++ I+ + EYD R D + +L + P +G Sbjct: 1 MQELVEQLNKAGKAYYQDAEEIMSNYEYD---RLYDELVSLEKELGITL-SGSPTANVGY 56 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKKDDNSIFFTLEPKIDGTM 138 E+ L K H P LSL+K ++E+L+KF ++ W K+DG Sbjct: 57 EVLSELPKERHDSPMLSLDKTKDVEELKKFAGGQKVMMSW--------------KLDGLT 102 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I + Y G A RG+G GE ++ R IP ++ E+I +RGE I DF Sbjct: 103 IVLTYRDGTLYKAVTRGNGEVGEVITNNARVFRNIPLQIAYK-GELI-LRGEAVIGYKDF 160 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQY 255 +N E+ V + Y NPRN SG +R+LN +IT R + F+ L + + F + Sbjct: 161 EKINGEIEDVDAR-YKNPRNLCSGSVRQLN-NEITAKRNVRFYAFTLVQADGVDFHNSRV 218 Query: 256 EMLQKMRCLGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ +R GF V +T V ++E K + P D GLV D+ + Sbjct: 219 CQMEWLREQGFEVVEFCEVTKDTLEAEVIKFSE-KIAENDFPSD--GLVLVYDDVEYGRS 275 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG ++ PR + K+A++ T+LL+I+ RTG++ PVA EPV + G ++ A++H Sbjct: 276 LGRTSKFPRDSFAFKWADETKETKLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVH 335 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N ++ L ++ VGD + V +A +IP++ + + D P C Sbjct: 336 NLSIMEEL-----------ELGVGDEIEVYKANMIIPQIAENLTRSGVKD-----IPLHC 379 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C D K A C C A+ L+ FVSRDA NIEGL + L+ F Sbjct: 380 PVCGG----DTEVKQVSNAKALYCINP-DCQAKHLKSFALFVSRDALNIEGLSEATLEKF 434 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 I+ ADIF L+R Q +IE + GFG+ S NL +SI K R +L + I Sbjct: 435 IAKG----YIKEYADIFHLERFQD----EIEKMEGFGEKSYRNLIESIEKARTTTLPKVI 486 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 + LGI ++G LA + F + + ++A ++ L + VG +IA A V+ Sbjct: 487 YGLGIANIG------LANAKMICSEFGCDTDKMLAAGPEE---LSAIQGVGGVIAGAFVD 537 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQL 673 ++ + R++ LLKE++ E+ V TG+++ R + +E + L Sbjct: 538 YFSDERHVRIFRDLLKELTIPAEETEQK-EQRFAGVNFVITGSVEHFANRGEIKELIENL 596 Query: 674 GAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G V+ ++ KT+ +I D + SK +KA +LG+ I++E+ FL +L + Sbjct: 597 GGKVTGSVTSKTNYLINNDVTSTSSKNKKANELGIPIISEKDFLEMLGE 645 >gi|167041226|gb|ABZ05983.1| putative NAD-dependent DNA ligase adenylation domain protein [uncultured marine microorganism HF4000_001N02] Length = 727 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 217/758 (28%), Positives = 353/758 (46%), Gaps = 141/758 (18%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKIG 79 + L Q +++H D YY + P+I D+EYD L F +L R DP P L+++G Sbjct: 15 IEELAQLLAHHSDLYYNEAAPVITDAEYDLL----------FDELKRL-DPTHPQLDRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + KV H P SL+K + ++ F+ + ++ F +PK+DG+ + Sbjct: 64 SDPAPGSVKVEHLFPMQSLDKASEVAEISHFVAQTTAHGRR-------FVCQPKLDGSAL 116 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ Y +G+ V AA RG+G GEDV+A R IP IP SL +RGEV + F Sbjct: 117 SLEYRRGRLVRAATRGNGERGEDVTANARRIPNIPE--SLGWDGDCHIRGEVVMPLETF- 173 Query: 200 ALNDEMIAVGRKPYA----NPRNAASGILR----RLNPTDITRYLNFFVHGL------GK 245 R YA NPRN A+G LR + D L+F +G+ K Sbjct: 174 ----------RSKYASFAPNPRNLAAGSLRQKHVKAGKGDAAD-LSFHAYGVMFPGLDHK 222 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNG-------VRQANTFHGI-------------VSYY 285 + A + + + + NG V +A GI + Sbjct: 223 HPDSPAPPDFN--HDSQAIDWLTQNGIAAAGNEVVEAGVDEGIEEAEADEAVAEALLQVT 280 Query: 286 NEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345 R T +++DG+V K+DEF ++ LG+ A PRW ++ KF ++A+T LL +D Q Sbjct: 281 ENWARKRDTADWELDGVVIKLDEFRKRELLGKTAHHPRWALAWKFPPEEATTVLLGVDWQ 340 Query: 346 IGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKR 405 GRTG +TPVAR+ PV + G + N TLHN +G++ R G I VGDRV + R Sbjct: 341 TGRTGTVTPVARVAPVRVSGVTVENTTLHN---------AGEIERLG--ISVGDRVRITR 389 Query: 406 AGEVIPKVVDIIV--------NERHPDAQPFS----------FPSFCPICQSRVVRDLNP 447 G+VIPK+V+++ N H D PF+ P+ CP C+S + D Sbjct: 390 RGDVIPKIVEVLGEATSADLDNRFHADGTPFADPLPLRRGVKIPANCPRCRSGLQED--- 446 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 G + RC L C + +LER + R A ++G+G++ + + A ++ Sbjct: 447 --GAFI---RCF-NLECPS-RLERSILYWCR-ALEMDGIGEKLAEQLCE----AGLVKTL 494 Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 D++ L S +E + + S N+ ++ + + L F+ +LG+ +G E+A Sbjct: 495 PDLYRL------SGKDLEGLERMAEKSAANVIAQLDDSKTLDLAAFLAALGLPGIGPELA 548 Query: 568 RSLAKYYLSYQNFAQEINN------IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 FAQEI + ++A + LIR+ VG+ +A + + + R Sbjct: 549 ----------GGFAQEIGSSTAMFELLADSEAAVERLIRIEGVGETVAGSFLSGLEMRRE 598 Query: 622 ICAVEALLKEVS-PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 + VE L+ ++ + EK S + + TGTL + ++ A G VVSA+ Sbjct: 599 M--VEDLVDVLTITDVEAVEK--SGSLTGQTFCITGTLTRPRKEVALMIKAAGGKVVSAV 654 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 S K D ++ G++ G KL+KA +L V +++E + L ++ Sbjct: 655 -SGKLDHLVAGESAGLKLDKANRLSVNVLSEAEVLSMI 691 >gi|325661475|ref|ZP_08150101.1| DNA ligase [Lachnospiraceae bacterium 4_1_37FAA] gi|325472424|gb|EGC75636.1| DNA ligase [Lachnospiraceae bacterium 4_1_37FAA] Length = 660 Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 204/719 (28%), Positives = 337/719 (46%), Gaps = 86/719 (11%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------P 74 + L ++++ + + YY S+ II D EYD L + +L + E+ G P Sbjct: 7 IKELTKKLNEYRNAYYNESESIISDYEYDKL----------YDELEKLENETGLSFANSP 56 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +G E+ L KV H+ P LSL+K +++DLRKF + D +L K+ Sbjct: 57 TKTVGFEVKSELEKVKHTHPMLSLDKTKSVDDLRKFAS----------DKDCILSL--KM 104 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + YE G V A RG+G GE ++ IP L++ E+ GE I+ Sbjct: 105 DGLTCLLTYENGVLVQAETRGNGDVGEVITHNANVFENIP--LTIEYKGHFEIEGEAIIA 162 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRL-NPTDITRYLNFFVHGLGKT--SEIFA 251 +DF +N+ + K Y NPRN SG +R+L N R++ F + I + Sbjct: 163 YDDFKKINESLPE--DKKYKNPRNLVSGSVRQLDNKIAAQRHIKFIAWKVPTEVPEGICS 220 Query: 252 KGQYEMLQKMRCLGFPV-----NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 L + LGF + +G ++ +K+ Y IDGLV Sbjct: 221 NSFLHRLMYTKDLGFEIVPLFTYSGKSDKENLPDMIE---SLKTKAHDYGYPIDGLVMTY 277 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ + LG PR I++KF +++ T L +I+ +G++G LTP A EPV I G Sbjct: 278 NDIQYGESLGLTGHHPRHSIAYKFYDEEFETTLKNIEWTMGKSGSLTPTAVFEPVEIDGT 337 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ A+LHN K L+ S GD + V +A ++IP+V D + + Sbjct: 338 MVERASLHNMSIFKDLELSH-----------GDTITVFKANQIIPQVSDNLDRTLNNLCI 386 Query: 427 PFSFPSFCPIC--QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P PS CPIC ++ +++D N + + C G L L +L FVSR+ NI+ Sbjct: 387 P---PSTCPICGGKTEIIKD-NDTEVLMCSNSNCKGKL------LGKLSAFVSRNKMNID 436 Query: 485 GLGKQQLD-FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 GL ++ L F + FS DI+ L+ + N+ GFG S+ L DSI Sbjct: 437 GLSEETLSKFIARGWLTCFS-----DIYKLKDYY----IHMINMSGFGRKSIDKLLDSIE 487 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K R++ L RFI +L I VG A+ ++K+ +F + +I N W S+I Sbjct: 488 KSRSVELNRFIAALSIPGVGDSTAKDISKH--CEYDFDTFVMRLIDKYN--W-SIIDG-- 540 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ- 662 +G+ +Q I E+ + N LL+ + P + + + K V TG + + + Sbjct: 541 IGEKTSQQINEWIDDSSNREDFRKLLQTIIPVKPNEGNSTDNTLSGKNFVITGDVTQFKN 600 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R + Q+++ G V+ ++ KT+ +I D + SK +KA++LG+ I++E++FL ++ Sbjct: 601 RKELQKFIESKGGKVTGSVTSKTNWLINNDVESTSSKNKKARELGIPIISEKEFLEMVN 659 >gi|154502207|ref|ZP_02039267.1| hypothetical protein RUMGNA_00017 [Ruminococcus gnavus ATCC 29149] gi|153797086|gb|EDN79506.1| hypothetical protein RUMGNA_00017 [Ruminococcus gnavus ATCC 29149] Length = 663 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 196/718 (27%), Positives = 328/718 (45%), Gaps = 92/718 (12%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73 K + L ++++ + D YY ++ + D+EYD L F +L+ E+ G Sbjct: 18 KRIKELVEQLNEYRDAYYNEARSDVSDAEYDRL----------FDELSELENETGVVYTN 67 Query: 74 -PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G E+ L KV HS P LSL+K +++DL KF D + I L Sbjct: 68 SPTQSVGYEVKSELEKVKHSHPMLSLDKTKSVDDLVKF---------AGDKDCI---LSL 115 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + YE G+ V A RGDG GE ++ + IP LS++ E+ GE Sbjct: 116 KMDGLTCLLTYENGELVQAETRGDGEIGELITHNAKVFENIP--LSIDYKGHFEIEGEAI 173 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 I+ DF +N + K Y NPRN ASG +R+L+ R++ F + ++I + Sbjct: 174 ITYEDFDKINKSL--PDDKKYKNPRNLASGSVRQLDSKIAAQRHIKFIAWKV--PTDIAS 229 Query: 252 KGQYEMLQKMRCLGF------PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 LQ +GF P+ F IV ++ + P IDGLV Sbjct: 230 SSFINRLQYALDIGFDTVPFLPIRGNCNAE--FINIVVEQLRKRAKEKSFP--IDGLVAT 285 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 ++ + + LG P+ I+ KFAE T L +I+ IG+TG LTPVA + V++ G Sbjct: 286 YNDITYGESLGMTGHHPKHSIAFKFAEDSEETVLREIEWSIGKTGTLTPVAIFDSVDLAG 345 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A+LHN +K L +I +G V V + E+IP+++ N D Sbjct: 346 TSVSRASLHNISIMKEL-----------NISIGSTVTVVKKNEIIPQIISCDANAMDAD- 393 Query: 426 QPFSFPSFCPIC--QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P+ CP+C ++R+V++ + + V H C + L R+ HFVS+ +I Sbjct: 394 ----IPTTCPVCGGETRIVKENDSEVLMCVNPH-------CKGKLLGRVSHFVSKKGMDI 442 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 GL ++ + + I DI+ L + ++ + GFG SV L SI Sbjct: 443 SGLSEETIKKLIE----LGWITEITDIYNLDQYYD----RLSTMSGFGKKSVDKLRTSIE 494 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + + L++FI SL + +G ++ L K + ++ F + + ++ Sbjct: 495 NSKTVRLDKFIASLSVPGIGTSQSKELVKAFGTWDKFRDA--------SVGYYDFTQLDG 546 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ- 662 GD++ I ++++ NI A L N + K V TG + K + Sbjct: 547 FGDVLNNNIHSWFEDMSNIADYLASLMTFESEDNSKTNN---SLNGKSFVVTGKVYKFKN 603 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + +E + + G V+ +++ T +I D + SK +KA++LGV+I+NEEQ + +L Sbjct: 604 RDEVKEAIEKFGGKVTGSVTKSTFALINNDIESNSSKNKKAKELGVQIINEEQLIEML 661 >gi|291522304|emb|CBK80597.1| DNA ligase, NAD-dependent [Coprococcus catus GD/7] Length = 653 Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 199/705 (28%), Positives = 337/705 (47%), Gaps = 91/705 (12%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLF 87 YY ++ + EYDAL + +L + E G P +G E+ L Sbjct: 21 AYYMQDTELMSNYEYDAL----------YDELVQLEKETGITLSNSPTIHVGYEVLSELP 70 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H P LSL+K +++ L ++ D + L K+DG I + Y+ G+ Sbjct: 71 KEEHEYPMLSLDKTKDVQVLADWL---------GDQTGV---LSWKMDGLTIVLTYDNGE 118 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G+ GE ++ R +P ++ + +RGE I +DF ALN + I Sbjct: 119 LVKAVTRGNGYVGEVITNNARVFKNVPHRITFKGK--LTLRGEAVIKYSDFNALNSQ-IE 175 Query: 208 VGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLG 265 Y NPRN SG +R+LN R + FF L + F + + + + G Sbjct: 176 DSEAKYKNPRNLCSGSVRQLNNAVTAERNVYFFAFTLVVAEGMDFYNSRMQQFEWLSSQG 235 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F V V + +Y + + + DGLV +++ + + LG A+ PR Sbjct: 236 FDVVEHVLVDR--ENLPTYVAQFADRIADNDFPSDGLVLILEDIAYGESLGTTAKFPRNA 293 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I+ K+A++ TRLLD++ RTG++ P+A EPV + G ++ A+LHN ++ L Sbjct: 294 IAFKWADEIRETRLLDVEWSASRTGLINPIAVFEPVELEGTTVSRASLHNISILRALQL- 352 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC----QSRV 441 GK GD + V +A +IP++ + N DA P CP+C + R Sbjct: 353 GK----------GDVIQVYKANMIIPQIAE---NLTRSDA--LEIPKKCPVCGKPTEVRC 397 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 V D V++ C C A+ ++R FVSRDAFNIEG+ + L+ F +S Sbjct: 398 VND--------VSSLYCVNE-ECPAKHVKRFLLFVSRDAFNIEGMSEATLEKFIQS---G 445 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 F +R PAD+F L I + GFG+ S L SI K R ++L + I+SLGI + Sbjct: 446 F-LREPADMFHLDSYHDV----IVEMDGFGEKSYQRLMASIQKARKVTLAKLIYSLGILN 500 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 +G AR L ++Y ++ ++A + ++ L + +G +IA + +++ + ++ Sbjct: 501 IGLSNARLLCQHY------RNDLQAMLAASTEE---LTAIDGIGPVIAGSFTDYFADEQH 551 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVV 677 ++ LL EV ++N S E + K V TG+L+ + R+ + + + GA V Sbjct: 552 RIELKDLLGEVEI----EQENFSEEGRVFDGKVFVITGSLEHFKNRNNLKALLEEKGAKV 607 Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +S KT +I D + SK ++A++LGV ++ EE+ + ++++ Sbjct: 608 AGSVSSKTSYLINNDSTSASSKNKRARELGVPVITEEELIDMMKK 652 >gi|227874422|ref|ZP_03992603.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268] gi|227839738|gb|EEJ50187.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268] Length = 692 Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 204/719 (28%), Positives = 341/719 (47%), Gaps = 91/719 (12%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73 KEL S E + YYQ + I+ + EYD A+ L E +G Sbjct: 46 KELISFLNEAA---KAYYQEGREIVSNLEYD----------KAYDTLLSLEKESGVVLSG 92 Query: 74 -PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G + +L K H P LSL+K ++EDL+ F+ Q ++ L Sbjct: 93 SPSQNVGYAVATALPKEAHETPMLSLDKTKSVEDLQSFL-------QGQEG-----ILSW 140 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG I + Y++GK + A RG+G GE V+ + +P L + + VRGE + Sbjct: 141 KLDGLTIVLHYQEGKLLKAVTRGNGIIGELVTENAKTFQNLP--LQIPFKGHLVVRGEAF 198 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-------TDITRYLNFFVHGLGK 245 IS +DF +N+E+ G K Y NPRN SG +R+L+P I+ + GK Sbjct: 199 ISYSDFERINEELPEEGAK-YKNPRNLCSGSVRQLDPKVTKERRVQISLFSLVLAEEEGK 257 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + F E + + GF V + R+ I E + + DGLV Sbjct: 258 APD-FHNQHEEEFRFLEKQGFSVVH--RKMVNAENIQEAVAEFSKLMPKNDFPSDGLVLL 314 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 ++ + + LG A+ PR I+ K+ +++ +T+LL ++ RTG++ PVA PV + G Sbjct: 315 YNDIAYGESLGRTAKFPRNAIAFKWQDEEETTKLLSVEWSPSRTGLINPVAIFTPVELEG 374 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++ A+LHN Y + L + +GD + V +A +IP+ + E + Sbjct: 375 TVVSRASLHNITYCEDL-----------ALGIGDEITVYKANMIIPQ-----IGENKTKS 418 Query: 426 QPFSFPSFCPICQ--SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P CP CQ +++V+D K H C A+++++ FVSRDA NI Sbjct: 419 GNLEIPKHCPACQGETKIVKDKETKMLYCTNPH-------CPAKRIKQFALFVSRDALNI 471 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGL + L+ + F P D+F+L++ ++ +I + GFG S + ++I Sbjct: 472 EGLSEMTLEKWLGR---GFIQEFP-DLFSLEKYRE----EIIGMEGFGLKSFEKIQENIE 523 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K + +L R ++ LGI +G R LA + F+Q+ ++ ++ +++V Sbjct: 524 KAKTSNLGRLLYGLGIEGIGVSNGRMLA------EAFSQDPYKLMDATKEE---ILQVKG 574 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G ++A +I E++Q N V LL + + + EK S I K V TG + Sbjct: 575 IGQVLADSIAEYFQKEENRRIVLELLSIL--HLEKEEKEEKSGISGKHFVITGAVHHFPN 632 Query: 664 HKA-QEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719 KA +E + + G S+ +S+ TD +I D+ SK +KA++LG+ I+ EE+FL LL+ Sbjct: 633 RKALEEEIRKAGGQSSSSVSQNTDYLINNDSTSGSSKNKKAKELGIPIITEEEFLKLLE 691 >gi|166030629|ref|ZP_02233458.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC 27755] gi|166029631|gb|EDR48388.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC 27755] Length = 647 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 194/700 (27%), Positives = 348/700 (49%), Gaps = 81/700 (11%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YYQ ++ I+ + EYD L D + +L + N P ++G E+ L K H Sbjct: 14 AYYQDAEEIMSNYEYDKL---YDELQELERELGITLS-NSPTVRVGYEVVSELPKERHES 69 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL+K ++E+L+ F+ D ++ + K+DG I + Y G A Sbjct: 70 PMLSLDKTKDVEELKNFVG---------DQKAL---MSWKMDGLTIVLTYRGGHLFKAVT 117 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RG+G GE ++ + +P +S E+I +RGE I DF +N E I Y Sbjct: 118 RGNGEVGEVITNNAKVFKNVPLQISYQ-GELI-LRGEAVIGYKDFEKIN-EQIQEAEAKY 174 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNN 270 NPRN SG +R+LN ++IT R + F+ L ++ F + ++ ++ GF V Sbjct: 175 KNPRNLCSGSVRQLN-SEITAKRNVKFYAFTLVSAKDVDFHNSRACQMEWLKEQGFEVVE 233 Query: 271 GVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 +H ++ E + I+ + + DGLV D+ + + LG ++ PR Sbjct: 234 -------YHEVIRDTVEAEVIKFSEKIAENDFPSDGLVLVYDDIAYGRSLGRTSKFPRDS 286 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 + K+A++ T+LL+I+ RTG++ PVA EPV + G ++ A++HN ++ L Sbjct: 287 FAFKWADEIRQTKLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISIMEEL--- 343 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV-VRD 444 ++ VGD + V +A +IP++ + D P CP+C + +R Sbjct: 344 --------ELGVGDEIEVYKANMIIPQIAQNLTRSGVKD-----IPKVCPVCGGKTEIRQ 390 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 ++ A CT C A+ ++ F SRDA NIEGL + L+ F D F I Sbjct: 391 VSN-----AKALYCTNP-ECQAKHVKAFALFASRDALNIEGLSEATLEKFI---DRGF-I 440 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 + DIF L + Q+ +I+ + GFG+ S NL ++ K + +L + I++LGI +G Sbjct: 441 KEFTDIFHLDKWQE----EIQTMEGFGEKSYKNLIANVEKAKVTTLPKVIYALGIPGIGL 496 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 A+ + + F+ +++ +I ++ L + VG+++A A V ++Q+ +++ + Sbjct: 497 ANAKVICR------EFSGDVDRMIHATAEE---LAEIQGVGEVLAGAFVTYFQDEKHVES 547 Query: 625 VEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILS 682 ++ L+ E+ I + E++ S +I V TG+++ R + +E + LG V+ ++ Sbjct: 548 LKRLIAEL--EIPKEEESESQQIFAGVNFVITGSVEHFANRGEVKELIESLGGKVTGSVT 605 Query: 683 RKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 KT+ +I D + SK +KA +LGV I++EEQF+ ++++ Sbjct: 606 SKTNYLINNDVTSTSSKNKKANELGVPIISEEQFIKMVEE 645 >gi|326201860|ref|ZP_08191730.1| DNA ligase, NAD-dependent [Clostridium papyrosolvens DSM 2782] gi|325987655|gb|EGD48481.1| DNA ligase, NAD-dependent [Clostridium papyrosolvens DSM 2782] Length = 657 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 202/698 (28%), Positives = 333/698 (47%), Gaps = 87/698 (12%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLF 87 YYQ + I+ + EYD L + +L E G P +G E+ +L Sbjct: 21 AYYQENTEIMPNIEYDKL----------YDELLELEKETGVVLSNSPSIHVGYELLSNLP 70 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H P LSL+K + L+++I QK L K+DG I + Y+ G Sbjct: 71 KERHEKPMLSLDKTKEVGALKEWIGT-----QKG-------ILSWKLDGLTIVLTYQDGH 118 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG G GE ++ R +P +++ + + +RGE I +DF+ +N+E+ Sbjct: 119 LVKAVTRGTGEVGEVITNNARVFRNLP--VTIAYKDTLILRGEAIIRYSDFIKINNEISD 176 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLG 265 V K Y NPRN SG +R+LN + R + FF L K + + + ++ G Sbjct: 177 VDAK-YKNPRNLCSGSVRQLNNKVTSERNVYFFAFSLVKADNVELENSRASQMNWLKNQG 235 Query: 266 FP-VNNGVRQANTFHGIVSYYNEMKSIRST-LPYDIDGLVYKVDEFSLQKQLGERARSPR 323 F V +N V ++++ +I + LP D GLV D + + LG A+ PR Sbjct: 236 FDIVEFKEVTSNDIEETVQWFSQ--NIEANDLPSD--GLVLTFDNIAYGESLGSTAKFPR 291 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 I+ K+ ++ T LL+I+ RTG++ P+A EPV + G ++ A++HN ++GL Sbjct: 292 DSIAFKWRDEIKETTLLEIEWSASRTGLINPIAIFEPVELEGTTVSRASIHNLSIMEGL- 350 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 ++ +GD + V +A +IP++ + N P P CP+C + Sbjct: 351 ----------ELGIGDTIGVYKANMIIPQISE---NLTRSGMAP--IPEECPVCSGKT-- 393 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 ++ + G V C C A+Q++ HFVSRDA NIEGL + L+ Sbjct: 394 EIKQENG--VKTLYCVNN-ECLAKQIKSFTHFVSRDAMNIEGLSEATLEKLI----AKGL 446 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 I+ AD+F ++ + +I + G G+ S L SINK R + R ++SLGI +VG Sbjct: 447 IKELADLFHIEMYKN----EIIEMEGLGEKSFNKLIASINKARKTTAIRLLYSLGIPNVG 502 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 A+ + KY F + NNI N D+ LI++ +GDI+A++ + F+ + + Sbjct: 503 LSNAKLICKY------FKYDWNNI---ENADFTELIQIGGIGDIMAESFISFFADEKKRI 553 Query: 624 AVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSA 679 V +LKE+ E VS EN V TG+++ + R + + + + G V+ Sbjct: 554 IVHDVLKELE----LEEVQVSQSEQIFENVNFVITGSVEMFKNRDELKGVIEEKGGKVTG 609 Query: 680 ILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFL 715 ++ KT+ +I DN SK +KA++L + I+ E QF+ Sbjct: 610 SVTSKTNYLINNDNLSNSSKNKKAKELNISIITEAQFV 647 >gi|167761341|ref|ZP_02433468.1| hypothetical protein CLOSCI_03749 [Clostridium scindens ATCC 35704] gi|167661007|gb|EDS05137.1| hypothetical protein CLOSCI_03749 [Clostridium scindens ATCC 35704] Length = 649 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 202/696 (29%), Positives = 339/696 (48%), Gaps = 73/696 (10%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YYQ ++ I+ + EYD R + N P +G E+ L K H Sbjct: 14 AYYQNAEEIMSNYEYD----RLYDELLKLEEELGLTLSNSPTANVGYEVLSELPKERHER 69 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL+K ++E+L++F+ D ++ + K+DG I + Y +G+ A Sbjct: 70 PMLSLDKTKDVEELKRFVG---------DQKAL---MSWKMDGLTIVLTYREGRLFKAVT 117 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RG+G GE V+ R IP ++ I+ RGE I DF +N+E+ V + Y Sbjct: 118 RGNGEVGEVVTNNARVFKNIPLQIAYQGQLIL--RGEAVIGYKDFEKINEEIEDVDAR-Y 174 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNN 270 NPRN SG +R+LN +IT R + F+ L + + F + + + GF V Sbjct: 175 KNPRNLCSGSVRQLN-NEITAKRNVKFYAFSLVEAEGVDFYNSRARQMNWLIEQGFEVVE 233 Query: 271 GVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 +T V ++E K ++ P D GLV D+ + + LG ++ PR + K Sbjct: 234 FQEVTRDTVEAEVLKFSE-KIAQNDFPSD--GLVLVYDDIAYGQSLGRTSKFPRDSFAFK 290 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 +A++ TRLL+I+ RTG++ PVA EPV + G ++ A++HN ++ L Sbjct: 291 WADELRETRLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISIMEEL------- 343 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV-VRDLNPK 448 ++ VGD + V +A +IP++ + D P CP+C+ R VR ++ Sbjct: 344 ----ELGVGDTIEVYKANMIIPQIARNLTRSGVKD-----IPKNCPVCRGRTEVRQVSN- 393 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 A C C A+ ++ FVSRDA NIEGL + L+ F IR A Sbjct: 394 ----AKALYCINP-DCQAKHVKSFALFVSRDALNIEGLSEATLEKFI----SMGYIREYA 444 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 DIF L R ++ +I+ + GFG+ S NL DSI K R +L R I+ LGI ++G A+ Sbjct: 445 DIFHLDRYRE----EIQTMEGFGEKSYQNLIDSIEKARTTTLPRVIYGLGIANIGLANAK 500 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 + K F ++ ++ ++ L + +G++IA A V+++ + + + L Sbjct: 501 MICK------EFQYDLEAMLKATVEE---LNAISGIGEVIATAFVDYFSDNVHRKRLRNL 551 Query: 629 LKEVSPSIGRHEKNVSSEIENK-KLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTD 686 L E+ I + E + +++I N V TG+++ R++ +E + LG V+ ++ KT+ Sbjct: 552 LAEL--IIPKEEADSAAQIFNGVNFVITGSVEHFANRNEVKELIESLGGKVTGSVTSKTN 609 Query: 687 IIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +I D + SK +KA LG+ I++EE FL ++++ Sbjct: 610 YLINNDVTSTSSKNKKANDLGIPIISEETFLKMVEE 645 >gi|302387645|ref|YP_003823467.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1] gi|302198273|gb|ADL05844.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1] Length = 654 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 216/720 (30%), Positives = 343/720 (47%), Gaps = 100/720 (13%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG----- 73 KEL +L ++ YYQ S+ I+ + EYD L + +L ED G Sbjct: 9 KELVNL---LTAAGKAYYQESREIMSNFEYDRL----------YDELKELEDETGVILSK 55 Query: 74 -PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G ++ L K H P LSL+K ++E L++++ S L Sbjct: 56 SPTQNVGYQVLSELPKEAHETPMLSLDKTKSVESLQEWL------------GSQTGVLSW 103 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGE 190 K+DG + + Y +G A RG+G GE ++ + IP LNI + E+ RGE Sbjct: 104 KLDGLTVVLSYNRGTLQKAVTRGNGEIGEVITNNAKVFSNIP----LNISHMGELILRGE 159 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF----FVHGLG 244 I +DF +N+E+ V K Y NPRN SG +R+LN IT R +NF V G Sbjct: 160 AVIKYSDFNRINEEIEEVAAK-YKNPRNLCSGSVRQLN-NQITAQRNVNFKAFSLVTAEG 217 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDI--DG 301 K Q+E L++ GF V + + +T V ++ K+I S YDI DG Sbjct: 218 AEFNNSRKEQFEWLKRQ---GFDVVDYEMVTRDTLPEAVETFS--KNISS---YDIPSDG 269 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 LV D+ + + LG ++ PR I+ K+A++ TRL I+ RTG++ PVA +PV Sbjct: 270 LVLLFDDIAYGEALGRTSKFPRNAIAFKWADEIRETRLDHIEWSASRTGLINPVAIFDPV 329 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G ++ A++HN ++ L ++ GD + V +A +IP++ + Sbjct: 330 ELEGTTVSRASVHNLSIMEAL-----------ELGEGDEITVYKANMIIPQIAGNLTR-- 376 Query: 422 HPDAQPFSFPSFCPIC-QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 ++ P CP+C S +R +N V + CT C A++L+ FVSRDA Sbjct: 377 ---SKKIRIPDQCPVCGGSTEIRRVND-----VKSLYCTNP-DCQAKRLKGFSLFVSRDA 427 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 NI+GL + L+ F A IR ADIF L++ ++ + T++E GFG S NL Sbjct: 428 LNIDGLSEATLEKFI----GAGYIREFADIFHLEQHEE-AITQME---GFGRKSYDNLIQ 479 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ K + +L R I+ LGI +G A+ L Q F + + ++ L Sbjct: 480 AVKKASHTTLPRLIYGLGIAGIGLANAKMLC------QEFKSDFGKMRKAEEEE---LTA 530 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VP +G ++A A + +++ +N V+ LL EV+ G E E V TG++ Sbjct: 531 VPGIGKVLADAWITYFKEEKNNRMVDRLLSEVTIQ-GDGEVRSGGIFEGMVFVMTGSVNH 589 Query: 661 IQRHKA-QEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFL 717 + KA QE + G + ++ +T +I D SK +KA++LGV I++EE F+ L Sbjct: 590 YENRKALQEDIEAHGGKAAGSVTSRTTYLINNDTTSNSSKNKKAKELGVPIISEEDFIKL 649 >gi|326445394|ref|ZP_08220128.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] Length = 687 Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 199/739 (26%), Positives = 316/739 (42%), Gaps = 80/739 (10%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 L ++A S +R E + Q + YY + D+ YD L+R A P Sbjct: 4 LPAVQAQSAVSSRTEYEAALQRLRDASRAYYGDGDSPLDDATYDQLRRSVLAWEQENPAE 63 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P G + + + V H+ P LSL+ + + E L + + R Sbjct: 64 VSPDSPTG----LVADGAAPVGDVAHTTPLLSLDNVSDAEGLTAWGLSVQRRLGHVPQGG 119 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 FT+EPK+DG + RY G+ V RG G GEDVS I I +P L+L P + Sbjct: 120 --FTVEPKLDGAAVAARYRGGRLVQVITRGVGSHGEDVSHVIGQIDGLPEQLTL--PVTV 175 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG--- 242 EVRGEV ++ F N+ A + +ANPRN +G LR + R + F+ +G Sbjct: 176 EVRGEVAFTQEQFETANEVRAAHNEQVFANPRNGVAGTLRAKGRSYQLR-MTFWAYGAVE 234 Query: 243 LGKTSEIFAKGQY-EMLQKMRCLGFPVNN----GVRQANTFHGIVSYYNEMKSIRSTLPY 297 L + + A + E L + +G G+ + + ++R+ LP Sbjct: 235 LDSVAYLPAGATHAETLAAVAAVGIQTTADSPAGLHVVADLASAQQRVDAIAAMRAGLPV 294 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 IDG+V K+D+ + Q G +R P W I+ K + T L D+ ++GRTG+L P A Sbjct: 295 GIDGVVVKLDDATEQAAAGVGSRFPHWAIAFKLPAVERQTVLEDVVWEVGRTGVLAPTAI 354 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L PV I G+ +T ATLHN I+ RD+ +GD V V +AG++IP+V + Sbjct: 355 LAPVEIDGSTVTRATLHNPADIR-----------RRDLHIGDAVTVFKAGDIIPRVQGPV 403 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 R A+ P CP C + K RC G AC+ L + + Sbjct: 404 AQLRPEGAREVPLPEVCPNCGGEI--------NKAQERWRCAKGTACALPAL--IGYAAG 453 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R+ +IEGLGK + +S + I AD+FTL Q T+ + Sbjct: 454 REMLDIEGLGKTYVAALVES---GYVTDI-ADLFTLSAEQLTTASGSAK-------RAAK 502 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L + I + + L R +LG+ G ++R +A+++ + Q D + Sbjct: 503 LAEQIEAAKALPLSRVFCALGVLGTGRSMSRRIARHFGDMGSIRQA----------DAAA 552 Query: 598 LIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALL--KEVSPSIGRHEKNVSSEIENK 650 L V +G A IVE + + I A ++ +E SP+ + + K Sbjct: 553 LRDVEGIGPEKAPVIVEQVASLAPVIDKLIAAGVSMAEPREASPA------GDAGPLAGK 606 Query: 651 KLV----FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII----VGDNPGSKLEKAQ 702 +V TG L R + + + G + ++ KT I++ G P +K KA Sbjct: 607 VVVVTGKMTGPLAAYARAEMTALIERAGGRAGSSVNAKTSILVAAPSAGGKPSTKAIKAA 666 Query: 703 QLGVKIMNEEQFLFLLQQY 721 +LGV++ E F L+ + Sbjct: 667 ELGVEVHTPEDFAELVADF 685 >gi|254383856|ref|ZP_04999203.1| DNA ligase [Streptomyces sp. Mg1] gi|194342748|gb|EDX23714.1| DNA ligase [Streptomyces sp. Mg1] Length = 696 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 189/727 (25%), Positives = 313/727 (43%), Gaps = 80/727 (11%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R E + + + YY ++ D+ YD L+ A P +E G Sbjct: 25 RSEYEAALRRLREASQAYYGDGDSVMDDASYDRLRLALLAWETEHP----AEVAPGSPTT 80 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + + V H+ LSL+ +++ E L + + R + FT+EPKIDG Sbjct: 81 LVADGAAPAGDVAHTTRLLSLDNVFDAEGLVAWGASVERRLGRAPAGG--FTVEPKIDGA 138 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + RY G+ V RGDG GED+S I I +P +L+ +EVRGEV ++ Sbjct: 139 AVAARYRGGRLVRIVTRGDGSQGEDISHVIGQIDGLPELLAGE--ATVEVRGEVAFTQEQ 196 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI--FAKGQY 255 F N +A G +ANPRN +G LR + R + F+ +G + + G Sbjct: 197 FEVANAVRVAHGAPVFANPRNGTAGTLRAKDRPYRLR-MTFWAYGAVELEGVPFLPAGAT 255 Query: 256 EMLQKMRCLGFPVNNGVRQANTFH------GIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + V H G + M ++R+ LP IDG+V K+++ Sbjct: 256 QAEALAAVAAAGVRTTAAAGAGLHIVDDLAGAQQAVDAMAAMRAELPVGIDGVVIKLNDT 315 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q+ +G R P W I+ K + T L D+ ++GRTG+L P A L PV I G+ +T Sbjct: 316 AEQEAIGSGTRFPYWAIAVKLPAVERQTVLEDVVWEVGRTGVLAPTAVLAPVEIDGSTVT 375 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 ATLHN I+ RD+ +GD V V +AG++IP+V + R A+P Sbjct: 376 RATLHNPADIR-----------RRDLHIGDTVTVYKAGDIIPRVQAAVALLRPAGAKPVP 424 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C ++N + RC G +C+ L +++ R+ +I+GLGK Sbjct: 425 LPETCPRCGG----EINTAQERW----RCAKGTSCALPAL--IEYAAGREMLDIDGLGKT 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + S D + AD+FTL Q T+ + L + I + Sbjct: 475 YVAALVDSGD----VTDVADLFTLTLEQLTAASGSSR-------RAAKLAEQIEAAKARP 523 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L R +LG+ G ++R +A+++++ + A D + V +G A Sbjct: 524 LSRVFCALGVLGTGRSMSRRIARHFVTME----------AIRRADAAEMQDVEGIGPEKA 573 Query: 610 QAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSE------IENKKLVFT----GTL 658 IVE + A+ ++ K ++ + HE S+ ++ K +V T G L Sbjct: 574 PVIVE------QVAALAPVIDKLIAAGVTLHEPEASATASAGGPLDGKVVVVTGKMAGPL 627 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN----PGSKLEKAQQLGVKIMNEEQF 714 + R + + + G + +S +T +++ + P SK KA +LGV+++ E F Sbjct: 628 EGFGRTEMNALIEKAGGRAGSGVSARTSVLVCAPSASGKPSSKAVKAAELGVEVLTPEAF 687 Query: 715 LFLLQQY 721 L+ Y Sbjct: 688 AELVADY 694 >gi|254389746|ref|ZP_05004971.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] gi|197703458|gb|EDY49270.1| DNA ligase [Streptomyces clavuligerus ATCC 27064] Length = 719 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 199/739 (26%), Positives = 316/739 (42%), Gaps = 80/739 (10%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 L ++A S +R E + Q + YY + D+ YD L+R A P Sbjct: 36 LPAVQAQSAVSSRTEYEAALQRLRDASRAYYGDGDSPLDDATYDQLRRSVLAWEQENPAE 95 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P G + + + V H+ P LSL+ + + E L + + R Sbjct: 96 VSPDSPTG----LVADGAAPVGDVAHTTPLLSLDNVSDAEGLTAWGLSVQRRLGHVPQGG 151 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 FT+EPK+DG + RY G+ V RG G GEDVS I I +P L+L P + Sbjct: 152 --FTVEPKLDGAAVAARYRGGRLVQVITRGVGSHGEDVSHVIGQIDGLPEQLTL--PVTV 207 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHG--- 242 EVRGEV ++ F N+ A + +ANPRN +G LR + R + F+ +G Sbjct: 208 EVRGEVAFTQEQFETANEVRAAHNEQVFANPRNGVAGTLRAKGRSYQLR-MTFWAYGAVE 266 Query: 243 LGKTSEIFAKGQY-EMLQKMRCLGFPVNN----GVRQANTFHGIVSYYNEMKSIRSTLPY 297 L + + A + E L + +G G+ + + ++R+ LP Sbjct: 267 LDSVAYLPAGATHAETLAAVAAVGIQTTADSPAGLHVVADLASAQQRVDAIAAMRAGLPV 326 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 IDG+V K+D+ + Q G +R P W I+ K + T L D+ ++GRTG+L P A Sbjct: 327 GIDGVVVKLDDATEQAAAGVGSRFPHWAIAFKLPAVERQTVLEDVVWEVGRTGVLAPTAI 386 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L PV I G+ +T ATLHN I+ RD+ +GD V V +AG++IP+V + Sbjct: 387 LAPVEIDGSTVTRATLHNPADIR-----------RRDLHIGDAVTVFKAGDIIPRVQGPV 435 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 R A+ P CP C + K RC G AC+ L + + Sbjct: 436 AQLRPEGAREVPLPEVCPNCGGEI--------NKAQERWRCAKGTACALPAL--IGYAAG 485 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R+ +IEGLGK + +S + I AD+FTL Q T+ + Sbjct: 486 REMLDIEGLGKTYVAALVES---GYVTDI-ADLFTLSAEQLTTASGSAK-------RAAK 534 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L + I + + L R +LG+ G ++R +A+++ + Q D + Sbjct: 535 LAEQIEAAKALPLSRVFCALGVLGTGRSMSRRIARHFGDMGSIRQA----------DAAA 584 Query: 598 LIRVPLVGDIIAQAIVEFYQN-----PRNICAVEALL--KEVSPSIGRHEKNVSSEIENK 650 L V +G A IVE + + I A ++ +E SP+ + + K Sbjct: 585 LRDVEGIGPEKAPVIVEQVASLAPVIDKLIAAGVSMAEPREASPA------GDAGPLAGK 638 Query: 651 KLV----FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIII----VGDNPGSKLEKAQ 702 +V TG L R + + + G + ++ KT I++ G P +K KA Sbjct: 639 VVVVTGKMTGPLAAYARAEMTALIERAGGRAGSSVNAKTSILVAAPSAGGKPSTKAIKAA 698 Query: 703 QLGVKIMNEEQFLFLLQQY 721 +LGV++ E F L+ + Sbjct: 699 ELGVEVHTPEDFAELVADF 717 >gi|312601241|gb|ADQ90496.1| DNA ligase [Mycoplasma hyopneumoniae 168] Length = 559 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 182/606 (30%), Positives = 298/606 (49%), Gaps = 78/606 (12%) Query: 149 VYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 + A RGDG GE+V I IP+ +N E +EVRGE+YI + F +L E Sbjct: 2 IKALTRGDGVFGENVLVNALKINDEFIPK--KINYLEDLEVRGEIYIDNSTFASLQLET- 58 Query: 207 AVGRKPYANPRNAASGILRR---------------LNPTDITRYLNFFVHGLGKTSEIFA 251 K + NPRNAASGILRR L RYL F + L + Sbjct: 59 ----KKFKNPRNAASGILRRYKNHKPKIDAKSIKFLEEESDFRYLKSFFYTLVNPEKHKI 114 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q++ + +R LGF VN ++ + + ++ + +K R L Y+IDG+V KV+EFS+ Sbjct: 115 NSQFDSINFLRNLGFQVNPFQKKCSDLKDVFNFISIIKQKRDFLNYNIDGVVVKVNEFSI 174 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++LG ++ P I+ KF + A T+LL I IGRTG +T A++EPV + G+ I++A Sbjct: 175 YEKLGSTSKFPHSAIAFKFEDDIAKTKLLAIFATIGRTGKVTYNAKIEPVTLAGSKISSA 234 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 L N YI+ L + + V +K+AGE+IP+++ + N +P FS Sbjct: 235 ILPNYSYIENL-----------KLNLNTEVYIKKAGEIIPQIIGSVHN--YPKTN-FSVV 280 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP C S +V N ++G C C L+++ HF S++A NIE L ++++ Sbjct: 281 KNCPKCNSELV---NSESG---LDQFCQNQF-CPEIILQKIVHFCSKNALNIESLAQKRI 333 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIEN---ILGFGDV-------SVTNLYDS 541 F + I DIF L+ + + ++ N +L + S+ L + Sbjct: 334 KKFLEKG----LISSACDIFYLKDKLELIYERLSNKNQLLTKQNASQSMQIKSIMKLLNE 389 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + K +NI R IF LGIR+VG + A+ L++Y +NI N D+ L Sbjct: 390 VEKAKNIDFYRLIFGLGIRNVGLKAAKILSRY----------ASNISELRNLDFNLLKNQ 439 Query: 602 PLVGDIIAQAIVEFYQNPRN---ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 G +I +++++++ N +N + +E + + ++ N + +G L Sbjct: 440 YDFGPVIIESLIDYFNNQKNSEQLNCLETVGFSFKTTFLTNQSNSWAS-----FAISGKL 494 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 K R + + + GA L++KTD +++G + GSK+EKA++ G+KI+NE QF L+ Sbjct: 495 SK-PRDEYVRIIEESGASFHESLTKKTDFLLLGQSAGSKIEKAKKAGIKIINEVQFFDLI 553 Query: 719 QQYNTT 724 + T Sbjct: 554 KNSKKT 559 >gi|323226774|gb|EGA10965.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 338 Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 214/374 (57%), Gaps = 42/374 (11%) Query: 349 TGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 TG +TPVARLEPV + G L++NATLHN D I+ L +R+GD+V+++RAG+ Sbjct: 1 TGAITPVARLEPVQVAGVLVSNATLHNADEIERLG-----------LRIGDKVVIRRAGD 49 Query: 409 VIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 VIP+VV+++++ER + +P FP+ CP+C S D+ G+ A RCTGGL C AQ+ Sbjct: 50 VIPQVVNVVLSERPEETRPIVFPTHCPVCGS----DVERVEGE--AVTRCTGGLICGAQR 103 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 E LKHFVSR A +++G+G + +D + E + PAD+F L + K+ + Sbjct: 104 KESLKHFVSRRAMDVDGMGDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLD 153 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G S N+ +++ K + + RF+++LGIR VG A LA Y+ + + Sbjct: 154 RMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQ------- 206 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVS 644 A D+ L +VP VG ++A + F+ N + LL E +P + + + + Sbjct: 207 AATIDE---LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INVQEID 262 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQL 704 S K +V TG+L ++ R A+ + +GA V+ +S+KTD++I G+ GSKL KAQ+L Sbjct: 263 SPFAGKTVVLTGSLSQMSRDDAKARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQEL 322 Query: 705 GVKIMNEEQFLFLL 718 G+ +++E + + LL Sbjct: 323 GITVIDEAEMIRLL 336 >gi|168334213|ref|ZP_02692416.1| DNA ligase, NAD-dependent [Epulopiscium sp. 'N.t. morphotype B'] Length = 639 Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 181/652 (27%), Positives = 313/652 (48%), Gaps = 71/652 (10%) Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N KIG ++ L +H LSL+K I+ L+ F+ L Sbjct: 54 NSVTQKIGHTVSNELVTKSHDTSILSLDKTKKIDILQNFLGNEEGL------------LS 101 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + I+Y+ G + A RGDG GEDV+A + +P L + + + +RGE Sbjct: 102 YKLDGLTVVIKYDNGNLIEAVTRGDGQVGEDVTANAKTFRNLP--LKIKYKDKLTIRGEA 159 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 I+ ++F +N V Y NPRN SG +R+L+ + R ++F + K + F Sbjct: 160 IITNSNFARIN----MVEDNKYKNPRNLCSGSVRQLDSSVTAKRNIDFICFAVMKCDKNF 215 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + EML+ ++ GF V V T +V + + + + DGLV ++ Sbjct: 216 VTKK-EMLKFLKQQGFAVVEAEVVTDKTLKTVVEKFTANITNKD---FQADGLVLSFNDI 271 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + K LG ++ P+ +++K+ + Q T L I+ RTG + PVA V++ G +T Sbjct: 272 AYSKSLGVTSKFPKDSMAYKWKDIQKETILEAIEWNTSRTGKINPVAVFAAVDLEGTTVT 331 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 +A++HN ++ L + +GDR++V +A +IP+++ E P + Sbjct: 332 HASIHNISMVEEL-----------KLGLGDRIIVYKANMIIPQIL-----ENLSQTGPVA 375 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ C C + +T L G C +QL++L HFVSR+A +I+GL + Sbjct: 376 IPNVCSKCGGNTIIKQEKETKTLYC-----GNPNCLEKQLKQLVHFVSRNAMDIKGLSEA 430 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ I ++I+++++ + +I ++ GFG+ S T L SI+K R ++ Sbjct: 431 ILE--------KLPINDVSEIYSIEKYKD----EIISMRGFGEKSYTKLVKSIDKSRKVA 478 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RF+ +LGI VG E A+ + KY F ++ I A + ++ L + +G +IA Sbjct: 479 LHRFVTALGIPQVGVENAKLICKY------FXDNLDAIRAASEEE---LHDIEGIGSLIA 529 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA-QE 668 + I ++ N N ++ LL E+ + E N SS ++ K TG L + +A Q+ Sbjct: 530 KEIYRYFNNEENKQLIDKLLMEI--KFEQKETNSSSSLDGKIFAITGKLNYFENRQALQK 587 Query: 669 YVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 + Q G VS +S KT +I + + K KA +L + I++EE F+ +L Sbjct: 588 KIEQCGGKVSESISSKTSYLINNEINSTSKKNSKAHELSIPIISEEDFVKML 639 >gi|154502352|ref|ZP_02039412.1| hypothetical protein RUMGNA_00165 [Ruminococcus gnavus ATCC 29149] gi|153796977|gb|EDN79397.1| hypothetical protein RUMGNA_00165 [Ruminococcus gnavus ATCC 29149] Length = 655 Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 205/718 (28%), Positives = 346/718 (48%), Gaps = 79/718 (11%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-PDLARSEDPN 72 +E +K + L + ++ Y Q I+ + EYD L + + LA S Sbjct: 1 MEAKKKRMQELVELLNRARRAYEQEDTEIMSNYEYDRLYDELEGLERELGTTLASS---- 56 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G E+ L K H P LSL+K ++E L+ F+ QK + Sbjct: 57 -PTVNVGYEVLSELPKERHEKPMLSLDKTKDVEQLKSFLGE-----QKA-------VISW 103 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRG 189 K+DG I + Y+ G+ A RG+G GE ++ + +P L IP E+I +RG Sbjct: 104 KMDGLTIVLTYQNGRLQKAVTRGNGEVGEVITNNAKVFRNLP----LQIPYQGELI-LRG 158 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247 E I DF +N+++ V + Y NPRN SG +R+LN +IT R + FF L K Sbjct: 159 EAVIGYKDFERINEQIEDVDAR-YKNPRNLCSGSVRQLN-NEITARRNVKFFAFTLVKAD 216 Query: 248 EI-FAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 F + + L + GF V + + + V++++E + + + P D GLV Sbjct: 217 GAEFENSRMQQLSWLEKQGFEVVEHHLADRASIEEEVAWFSE-QIVHNDFPSD--GLVLV 273 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 D+ + + LG A+ PR + K+A++ T LL+I+ RTG++ PVA EPV + G Sbjct: 274 YDDIAYGQSLGTTAKFPRDSYAFKWADEIRETTLLEIEWSPSRTGLINPVAIFEPVELEG 333 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A++HN ++ L ++ VGD + V +A +IP++ + + D Sbjct: 334 TTVSRASVHNISIMEDL-----------ELGVGDVIQVYKANMIIPQIAENLTRSGVKD- 381 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP+C + +T L CT C A+ L+ FVSRDA NIEG Sbjct: 382 ----IPQVCPVCGGATKIKMENETKTLY----CTNP-ECQAKHLKSFALFVSRDAMNIEG 432 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 L + L+ F F IR DI+ L R ++T I+ + GFG+ S L S+ Sbjct: 433 LSEATLEKFIGE---GF-IRDFTDIYHLDRYEET----IKTLEGFGEKSYAKLITSVENS 484 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R+ ++ + I+SLGI ++G A+ + + ++ N Q + L+ + VG Sbjct: 485 RSTTMPKVIYSLGIANIGLSNAKMICR---AFDNDPQRMMQATVE------ELVDIQGVG 535 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QR 663 ++IA+ V+++ + + + LL+EV + + E S++I EN V TG+++ R Sbjct: 536 EVIARTFVDYFSDETHRDLFKRLLQEV--KLQKEEGEESAQIFENMNFVITGSVEHFANR 593 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +E + G V+ ++ KT+ +I D + SK +KA++L V I++E QFL +L+ Sbjct: 594 REVKEIIESRGGKVTGSVTGKTNYLINNDVQSASSKNKKAKELNVPIISESQFLEMLE 651 >gi|218678588|ref|ZP_03526485.1| NAD-dependent DNA ligase LigA [Rhizobium etli CIAT 894] Length = 264 Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 114/259 (44%), Positives = 169/259 (65%), Gaps = 4/259 (1%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ FP+L R Sbjct: 8 VDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVRFPELIRE 67 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ ++G +++ V H+ P LSL+ ++ ED++ F+ IYRF + D SI F Sbjct: 68 DSPS---RRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASIYRFLGRLPDQSIAF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P ++E+R Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTS 247 GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G+ S Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244 Query: 248 EIFAKGQYEMLQKMRCLGF 266 ++ A Q+ ++ LGF Sbjct: 245 DMPADTQFRHGADLQGLGF 263 >gi|332992914|gb|AEF02969.1| DNA ligase, NAD-dependent [Alteromonas sp. SN2] Length = 404 Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 131/345 (37%), Positives = 200/345 (57%), Gaps = 10/345 (2%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++EQA+ SL +I+ ++ YY P + D++YD + +I FP+L P+ Sbjct: 4 TLEQAKARAESLRGQINEYNYQYYVLDAPTVPDAQYDRDMQELISIEKQFPELQSVSSPS 63 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 K+GG + +VTH +P LSL+ ++ L F RIY + KD+ + F+ EP Sbjct: 64 ---QKVGGSALSAFEQVTHEVPMLSLDNAFDDVSLLAFEKRIYD--RLKDNKELGFSCEP 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEV 191 K+DG ++I YE G+ V AA RGDG GE+++ +R I +P ++ N P +EVRGEV Sbjct: 119 KLDGLAVSILYENGEMVRAATRGDGQVGENITTNVRTIANVPLKLRGENYPSRLEVRGEV 178 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK-TSEI 249 ++ K F ALND A K +ANPRNAA+G LR+L+ R L F+ + LG T E Sbjct: 179 FMPKKGFEALNDYQRANDGKVFANPRNAAAGSLRQLDSKVTAKRPLMFYAYSLGVVTPED 238 Query: 250 FAKGQYEM--LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 F + L ++ G P+ + A G ++YY + ++R LPYDIDG+V+KVD Sbjct: 239 FELPHHHSARLAQLGEWGIPLCPDIDTAEGGKGCLAYYQRILTLRDDLPYDIDGVVFKVD 298 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352 + S+Q+ LG AR+PRW I+ KF ++ T+LLD++ Q+GRTG + Sbjct: 299 DISVQQTLGFVARAPRWAIAQKFPAQEEITKLLDVEFQVGRTGAM 343 >gi|253797891|ref|YP_003030892.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 1435] gi|253319394|gb|ACT23997.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 1435] Length = 474 Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 152/488 (31%), Positives = 242/488 (49%), Gaps = 36/488 (7%) Query: 234 RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKS 290 R L HGLG ++ +R G PV+ A G+ + Y+ E Sbjct: 12 RRLRMICHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH-- 69 Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 R + ++IDG+V KVDE +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG Sbjct: 70 -RHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTG 128 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 +TP A + PV + G+ + ATLHN IK R G + +GD V++++AG+VI Sbjct: 129 RITPFAFMTPVKVAGSTVGQATLHNASEIK---------RKG--VLIGDTVVIRKAGDVI 177 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+V+ +V R + F P+ CP C S + + K G A RC C Q E Sbjct: 178 PEVLGPVVELRDGSEREFIMPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRE 232 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 R+ H SR+ +IE LG + +++ I ++F L R T G Sbjct: 233 RVFHVASRNGLDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGE 288 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 + L +++K + L R + +L IRHVG AR+LA + S ++ I A Sbjct: 289 LSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGS-------LDAIAAA 341 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 + D L V VG IA A+ E++ + V+ + +++V + Sbjct: 342 STD---QLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGL 398 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +V TG+L R A+E + G + +S+KT+ ++ GD+PGSK +KA +LGV I++ Sbjct: 399 TIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILD 458 Query: 711 EEQFLFLL 718 E+ F LL Sbjct: 459 EDGFRRLL 466 >gi|225028066|ref|ZP_03717258.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353] gi|224954614|gb|EEG35823.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353] Length = 653 Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 212/722 (29%), Positives = 357/722 (49%), Gaps = 90/722 (12%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QAR + L + ++ YYQ + + + EYD L A+ A + S+ P Sbjct: 4 QAR--MKKLVEVLNQASKAYYQEDRELFSNKEYDELYDELQAL-EAETGIVMSQSPT--- 57 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 +G E+ L K TH P LSL+K + E LR W + + L K+D Sbjct: 58 QNVGYEVLSELEKETHESPMLSLDKTKSPEALRD--------WLGEKEG----LLSWKMD 105 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEVYI 193 G + + Y G A RG+G GE ++ R +P IP EV RGE I Sbjct: 106 GLTVVLTYRDGVLQKAVTRGNGVVGEVITNNARVFKNLPA----KIPFAGEVVLRGEAVI 161 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS--EI 249 +DF +N+ + V + Y NPRN SG +R+LN ++T R + FF L K E+ Sbjct: 162 KYSDFKKINEGIEDVDAR-YKNPRNLCSGSVRQLN-NEVTAKRNVFFFAFALVKAEGREL 219 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + ML ++ LGF + R G + ++E K + + P D GLV D+ Sbjct: 220 ENSVESNMLW-VQNLGFEIVPYKRVDRENIMGEIQNFSE-KIVENDFPSD--GLVLIYDD 275 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + LG A+ PR I+ K+A+++A TRLL I+ RTG++ P+A EPV + G + Sbjct: 276 IAYGISLGRTAKFPRNSIAFKWADEEAETRLLHIEWSPSRTGLINPIAVFEPVELEGTTV 335 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A+LHN ++GL ++ D + V +A +IP++ + + + QP Sbjct: 336 SRASLHNISIMEGL-----------ELGENDHIKVYKANMIIPQIAENLT--KSGTCQPI 382 Query: 429 SFPSFCPIC--QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 CP C + V + N KT V + CSA++++ H+VSRDA NI+GL Sbjct: 383 ---EHCPACGGATEVRIENNVKTLYCVNPY-------CSAKKVKLFSHYVSRDAMNIDGL 432 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 + L K + F + D++ L++ ++ +I + G+G+ S NL SI K R Sbjct: 433 SEATL---MKMIEQGFLSEL-NDLYNLEQYKE----QIIAMDGYGEKSYNNLMQSIEKSR 484 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + L RF++ +GI +VG+ AR L ++ F + N+ + ++ + ++ +G+ Sbjct: 485 DTQLFRFVYGIGILNVGSSNARLLCRH------FGNSLENLRGASVEE---MTQIDGIGE 535 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE------NKKLVFTGTLQK 660 +IA ++ ++++N N + LL+++ P + E+NVS+ E +K V TGT++ Sbjct: 536 VIATSVHDYFENEHN----QKLLEKLLPYLHFEEENVSAGGEQEQSLLDKTFVITGTVEH 591 Query: 661 I-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFL 717 R + +E + LG V+ +S+KTD +I DN SK +KA++LG+ ++ EE+FL + Sbjct: 592 FANRKELKEKIESLGGKVTGSVSKKTDYLINNDNMSSSSKNKKAKELGIPVITEEEFLSM 651 Query: 718 LQ 719 ++ Sbjct: 652 IE 653 >gi|297250739|ref|ZP_06934237.1| DNA ligase, NAD-dependent [Neisseria polysaccharea ATCC 43768] gi|296838226|gb|EFH22164.1| DNA ligase, NAD-dependent [Neisseria polysaccharea ATCC 43768] Length = 539 Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 167/557 (29%), Positives = 260/557 (46%), Gaps = 145/557 (26%) Query: 288 MKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG 347 M+ R LPY+IDG+V KV+ + Q++LG +R+PRW I+HKF ++ T + ID+QIG Sbjct: 1 MQQKRPELPYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEETLTVVEAIDVQIG 60 Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 RTG +TPVARL+PV +GG +TNATLHN+D + +D+RVGD V+V+RAG Sbjct: 61 RTGAVTPVARLQPVFVGGVTVTNATLHNQDEVSR-----------KDVRVGDTVVVRRAG 109 Query: 408 EVIPKVVDIIVNERH---------------------------------PDAQPFSFPSFC 434 +VIP+VV +I R P +P+ P+ C Sbjct: 110 DVIPEVVRVIFERRPMQETDVTGLSDGIGHRQDDLFAEAPAANQTQSVPLHKPYRLPTRC 169 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC+S + R+ G+ VA RC+GG+ C AQ+ + L HF SR A +I+GLG++Q++ Sbjct: 170 PICRSEIERE----EGEAVA--RCSGGMLCQAQRAQGLIHFASRKAMDIDGLGEKQIEQL 223 Query: 495 FKSEDPA--FSIRIPADIFTLQRRQQTSTTKIENI--LGFGDVSV--------------T 536 ++D F+ DI TLQ+ ++ + + + + SV Sbjct: 224 V-AQDLVRHFADLYRLDIPTLQKMKEAADKTVAELDQMPSEGSSVGASGKHKKQPTKWAE 282 Query: 537 NLYDSINKRRNISLERFIFSLGIRH--------------------------------VGA 564 N+ I + L RF+F+LGIRH +G Sbjct: 283 NILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGT 342 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP-----------------LVGDI 607 +A S+A ++ + A I+ ++A + +P + + Sbjct: 343 VVAHSIAHFFAQAEQQAM-IDELLAAGVTPQTQAVTIPPARHAEPQRWIARLPDFKISEN 401 Query: 608 IAQAI-------VEFYQN--------------PRNICAVEALLKEVS--PS---IGRHEK 641 AQA+ +E QN P+N +E L + PS + Sbjct: 402 KAQALWELAGKNIEGLQNDKALPADWQAWRSEPQNAALLENLKTFFAQMPSEDEAAQGSD 461 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 ++ + K V TGTL ++R +AQ + G VS +S+KTD ++ G+ GSKLEKA Sbjct: 462 GINKAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKA 521 Query: 702 QQLGVKIMNEEQFLFLL 718 LGV +++E + L LL Sbjct: 522 NALGVSVLSEAELLTLL 538 >gi|167745884|ref|ZP_02418011.1| hypothetical protein ANACAC_00578 [Anaerostipes caccae DSM 14662] gi|167654748|gb|EDR98877.1| hypothetical protein ANACAC_00578 [Anaerostipes caccae DSM 14662] Length = 651 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 193/701 (27%), Positives = 340/701 (48%), Gaps = 73/701 (10%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---PNGPLNKIGGEMNL 84 +S YYQ ++ ++ + EYD L +L + D + P +G E+ Sbjct: 15 LSEASKAYYQENRELMSNFEYDKL-------YDELLELEKETDTVLADSPSIHVGYELLT 67 Query: 85 SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144 SL K HS P LSL+K + L +++ D + L K+DG I + Y+ Sbjct: 68 SLEKEPHSSPMLSLDKTKEVGQLEEWLG---------DQKGL---LSWKLDGLTIVLTYQ 115 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204 +G + A RG+G GE V+ + +P+ ++ +I RGE I +DF +N+E Sbjct: 116 EGVLLKAVTRGNGEVGEVVTNNAKVFVNLPKKIAYKGTLVI--RGEAVIHYSDFRRMNEE 173 Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKM 261 M + + Y NPRN SG +R+LN ++T R + F+ + ++ F E Sbjct: 174 MEDLDSR-YKNPRNLCSGSVRQLN-NEVTAKRNVRFYGFSVADVPDVDFHNSVEEKFIWA 231 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 R LGF + + V A T + DGLV D+ + + LG A+ Sbjct: 232 RSLGFDIVDYV--AVTKDTVAEEVERFSQAIENNDQPSDGLVLIYDDIAYGRSLGTTAKF 289 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PR I+ K+A++ A T L +I+ RTG++ PVA +PV + G+ ++ A+LHN ++ Sbjct: 290 PRDSIAFKWADEIAETTLKEIEWSPSRTGLINPVAIFDPVELEGSTVSRASLHNISVMEE 349 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 L ++ VGD++ V +A +IP++ + N+ P P CP C + Sbjct: 350 L-----------ELGVGDQISVYKANMIIPQLAE---NQTRSGDAP--IPDTCPACGGKT 393 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + LV ++ CSA++++ HFVSRDA N++GL + L K D Sbjct: 394 EIEEENGIRTLVCPNQF-----CSAKKIKLFSHFVSRDAMNVDGLSEASL---HKMMDKG 445 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 + D+FTL+ ++ +I + GFG+ S NL D+I + + ++L +F++SLGI + Sbjct: 446 LLNEL-YDLFTLKEHKE----EIIEMEGFGEKSFHNLADAIERAKKVTLPKFLYSLGIAN 500 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG A+ + +Y F +++ I +D+ + + +G II +A+ +++ N Sbjct: 501 VGLSNAKLICRY------FEDDLDAIRNAEAEDFTA---IDGIGPIIGEAVSGYFRLENN 551 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAI 680 V+ LL+ V R + ++ K V TG+L+ + R + QE + LG + Sbjct: 552 KQTVDRLLQYVEIE-KRQTEETEKLLDGKTFVITGSLEHYENRKQLQEQIEILGGKATGS 610 Query: 681 LSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +++KTD +I ++ SK +KA +L + I+ EE+F+ +++ Sbjct: 611 VTKKTDYLINNNKNSASSKNKKAMELSIPIITEEEFMDMIK 651 >gi|220929395|ref|YP_002506304.1| DNA ligase, NAD-dependent [Clostridium cellulolyticum H10] gi|254781296|sp|B8I3I1|DNLJ_CLOCE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219999723|gb|ACL76324.1| DNA ligase, NAD-dependent [Clostridium cellulolyticum H10] Length = 657 Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 194/698 (27%), Positives = 340/698 (48%), Gaps = 81/698 (11%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLF 87 YYQ + I+ + EYD L + +L E G P +G E+ +L Sbjct: 21 AYYQENTEIMSNIEYDKL----------YDELLELEKETGVVLSNSPSIHVGYELLSNLP 70 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H P LSL+K ++ L++++ QK L K+DG I + Y+ G Sbjct: 71 KERHEKPMLSLDKTKDVGTLKEWLGT-----QKG-------ILSWKLDGLTIVLTYQDGH 118 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG G GE ++ R +P ++ I+ RGE I +DF+ +N+E+ Sbjct: 119 LVKAVTRGTGEEGEVITNNARVFRNLPVTIAYKGTLIL--RGEAIIRYSDFIKINNEIAD 176 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLG 265 VG K Y NPRN SG +R+LN + R + FF L K + + + ++ G Sbjct: 177 VGVK-YKNPRNLCSGSVRQLNNKVTSERNVYFFGFSLVKADNVELDNSRASQMNWLKNQG 235 Query: 266 FP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 F V+ ++ V ++++ +I + + DGLV ++ + + LG A+ PR Sbjct: 236 FDIVDFKEVTSSNIEETVQWFSQ--NIEAN-DFPSDGLVLTFEDIAYGESLGSTAKFPRD 292 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 I+ K+ ++ T LL+I+ RTG++ P+A EPV + G ++ A++HN ++GL Sbjct: 293 SIAFKWRDEIKETTLLNIEWSPSRTGLINPIAIFEPVELEGTTVSRASIHNISIMEGL-- 350 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 ++ +GD + V +A +IP++ + N P P CP+C+ + + Sbjct: 351 ---------ELGIGDTIGVYKANMIIPQISE---NLTRSGMAP--IPEECPVCKGKT--E 394 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 + + G V C C A+Q++ HFV RDA N+EGL + L+ I Sbjct: 395 IKQENG--VKTLYCVNN-ECLAKQIKSFTHFVGRDAMNMEGLSEATLEKLI----AKGLI 447 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 + AD+F +++ + +I + G G+ S L SINK R + R ++SLGI +VG Sbjct: 448 KELADLFHIEKYKN----EILELEGLGEKSFNKLITSINKARKTTAVRLLYSLGIPNVGL 503 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 A+ + +Y F + N I N ++ LI++ +GDI+A++ + F+ + + Sbjct: 504 SNAKLICRY------FKYDWNKI---ENAEFSELIQIGGIGDIMAESFIRFFSDEKKKVI 554 Query: 625 VEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILS 682 V+ +L E+ + + + S +I EN V TG++++ + R + ++ + + G V+ ++ Sbjct: 555 VQDVLNEL--ELEEVQLSQSEQIFENLNFVITGSVEQFKNRDELKDVIEEKGGKVTGAVT 612 Query: 683 RKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLL 718 KT+ +I DN SK +KA++L + I+ E QFL L Sbjct: 613 SKTNYLINNDNMSNSSKNKKAKELNISIITEAQFLEWL 650 >gi|213024998|ref|ZP_03339445.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 262 Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 114/278 (41%), Positives = 175/278 (62%), Gaps = 27/278 (9%) Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 +DIDG+V KV+ +LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVA Sbjct: 10 FDIDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVA 69 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 RLEPV + G L++NATLHN D I+ L +R+GD+V+++RAG+VIP+VV++ Sbjct: 70 RLEPVQVAGVLVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNV 118 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 +++ER + +P FP+ CP+C S D+ G+ V RCTGGL C AQ+ E LKHFV Sbjct: 119 VLSERPEETRPIVFPTHCPVCGS----DVERVEGEAVT--RCTGGLICGAQRKESLKHFV 172 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR A +++G+G + +D + E + PAD+F L + K+ + G S Sbjct: 173 SRRAMDVDGMGDKIIDQLVERE----YVHTPADLFRL------TAGKLTGLDRMGPKSAQ 222 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 N+ +++ K + + RF+++LGIR VG A LA Y+ Sbjct: 223 NVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYF 260 >gi|330879787|gb|EGH13936.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea str. race 4] Length = 347 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 125/341 (36%), Positives = 192/341 (56%), Gaps = 13/341 (3%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN------SIFFTLEPKIDGT 137 + +V H +P LSL + D+ +F R+ + + ++ EPK+DG Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ Y G V A RGDG +GED+S +R + IP ++ P+++EVRGEV++SK Sbjct: 128 AVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQ 254 F LN + +G K +ANPRNAA+G LR+L+ + IT R L F +GLG+TS A Sbjct: 188 GFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEFCCYGLGQTSAEIADTH 246 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +L+ ++ G PV++ ++ AN + YY ++ R TL Y+IDG+V+KV+ + Q++ Sbjct: 247 IGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFKVNNLAAQRE 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 LG RAR PRW I+HKF + T LLD++ Q+GRTG +TPV Sbjct: 307 LGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPV 347 >gi|163816857|ref|ZP_02208220.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759] gi|158448114|gb|EDP25109.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759] Length = 678 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 190/697 (27%), Positives = 332/697 (47%), Gaps = 73/697 (10%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY I+ + EYDAL A+ + N P K+G E+ L K H P Sbjct: 44 YYMEDTEIMSNLEYDALYDELSALEKETGMVM----SNSPTVKVGYEVVSELPKEAHEHP 99 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+K ++ L ++ QK + K+DG + + YE G+ + A R Sbjct: 100 MLSLDKTKDVGALASWLGG-----QKG-------VISWKMDGLTVVLTYENGEMIKAVTR 147 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 G+G GE ++ + +P +IP + +RGE I +DF A+N E I Sbjct: 148 GNGEIGEVITNNAKVFANVPH----HIPYKGKLTIRGEAVIKYSDFNAIN-EKITDAESK 202 Query: 213 YANPRNAASGILRRL-NPTDITRYLNFFVHGL--GKTSEIFAKGQYEMLQKMRCLGFPV- 268 Y NPRN SG +R+L N R ++FF L G+ + +Y+ L + GF V Sbjct: 203 YKNPRNLCSGSVRQLDNKITKERNVHFFAFNLVDGEDVDFHNSFKYQ-LDWLEQQGFTVV 261 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 + + + V ++E K + P D GLV +D+ + + LG A+ PR ++ Sbjct: 262 EHYLTDSAAIPDKVREFSE-KITENDFPSD--GLVLMLDDLAYGRSLGTTAKFPRNAMAF 318 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 K+A+++A T L ++ RTG++ PVA +PV + G ++ A++HN +K L A G+ Sbjct: 319 KWADEEAITHLRYVEWSPSRTGLINPVAVFDPVELEGTTVSRASIHNVSILKSL-ALGE- 376 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC--QSRVVRDLN 446 GD + V +A +IP++ + + P+ CP C ++ +VR+ Sbjct: 377 ---------GDEIAVYKANMIIPQIARNLTMSGN-----VVIPAACPACGGETEIVREEG 422 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 + + CT C A++L+ H+VSR+A NI+GL + ++ F + + Sbjct: 423 GAVSGVETLY-CTNQF-CPAKKLKSFSHYVSRNALNIDGLSEATIEKFIDEK----ILEE 476 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 P D++ L ++ I + GFG+ S L +++ R ++ R + LGI +VG Sbjct: 477 PPDLYKLAAHRE----HIVELEGFGEKSYNKLVAAVDASRQTNMWRLVNGLGIANVGEAT 532 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 A+ +AK++ N++ A D + + + +G +IA+ IV +++N +N ++ Sbjct: 533 AKLMAKHF---------ANDMDAMKKADVSAYVEIDGIGQVIAEDIVRYFENEKNCAIID 583 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKT 685 L+ E+ + + ++ K V TG+L + R++ +E + G V+ +S KT Sbjct: 584 RLMAEL--TFVDEASDTEQDLAGKVFVITGSLTHFENRNQLKELIESRGGQVTGSVSAKT 641 Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +I D + SK +KA+ L V I++EE FL L+ Q Sbjct: 642 SYLINNDVNSTSSKNKKAKSLDVPIISEEDFLELIGQ 678 >gi|253578000|ref|ZP_04855272.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850318|gb|EES78276.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 614 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 190/659 (28%), Positives = 317/659 (48%), Gaps = 72/659 (10%) Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P +G E L K H P LSL+K + E LR+FI L Sbjct: 18 NSPTVSVGYEAVDQLPKEEHESPMLSLDKTKDREVLREFIGEHKTL------------LS 65 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRG 189 K+DG I + YE G A RG+G +GE V+ R +P L IP + +RG Sbjct: 66 WKLDGLTIVLTYENGGLAKAVTRGNGVTGEVVTNNARVFKNVP----LKIPYQGRLVLRG 121 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTS 247 E I+ +DF +N+ + V K Y NPRN SG +R+LN +IT R + F+ L Sbjct: 122 EAIITYSDFERINESIEDVDAK-YKNPRNLCSGSVRQLN-NEITARRNVRFYAFTLVSAD 179 Query: 248 EI-FAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 + F + + ++ GF V A+T + Y++ + + P D GLV Sbjct: 180 GVDFHNSRARQFEWLKEQGFDVVEYRTVTASTLDEAMEYFSTAIT-ENDFPSD--GLVAL 236 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 D+ + LG A+ PR + K+A++ T LL+I+ RTG++ PVA EPV + G Sbjct: 237 YDDIAYGDSLGRTAKFPRNAFAFKWADEIRETHLLEIEWSPSRTGLINPVAVFEPVELEG 296 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ A++HN +K L + +GD + V +A +IP++ + + + Sbjct: 297 TTVSRASVHNVSILKEL-----------QLGIGDTITVYKANMIIPQIAENLTR-----S 340 Query: 426 QPFSFPSFCPIC-QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P CP C ++ +N V A CT C+A++++ F SRDA NI+ Sbjct: 341 SKLEIPDTCPACGHGTQIQKVND-----VEALYCTNP-DCAAKKIKSFALFASRDAMNID 394 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GL + L+ F F I DIF + + + +I + GFG+ S NL S++K Sbjct: 395 GLSEATLEKFIAR---GF-IHDFGDIFEIGKHRD----EIVEMDGFGEKSFENLMTSLDK 446 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L + I+SLGI ++G A+ + ++ F ++ I H + + +S I + Sbjct: 447 AKETTLAKVIYSLGIANIGLANAKVICRH------FDDDLEK-IRHADKEEISSIDT--I 497 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QR 663 G +IA ++ +++ N N ++ L+ + ++ + EK N V TG+++ R Sbjct: 498 GPVIAGSLTDYFSNEDNNRKLDHLMSHL--TVKKEEKTGEQIFRNMNFVITGSVEHFANR 555 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A+E++ LG V+ ++ KT+ +I D SK +KA++LG+ I++EE FL + QQ Sbjct: 556 AQAKEFIESLGGKVTGSVTSKTNYLINNDTTSNSSKNKKAKELGIPILSEEDFLKMAQQ 614 >gi|268610246|ref|ZP_06143973.1| DNA ligase, NAD-dependent [Ruminococcus flavefaciens FD-1] Length = 685 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 194/712 (27%), Positives = 331/712 (46%), Gaps = 92/712 (12%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL--- 75 KEL+ L ++ D YY I+ D EYD L + +L + E G + Sbjct: 44 KELNEL---LAKAADSYYNTGVEIMSDHEYDEL----------YDELEKLEKETGVILNG 90 Query: 76 ---NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++G E+ SL KV H+ LSL+K +I++L +++ F L Sbjct: 91 SRTQQVGFEVASSLTKVKHTSRMLSLDKTKSIDELTEWLGGHEGF------------LSW 138 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + + ++ G A RG+G +GED++ R I IP + + VRGE Sbjct: 139 KLDGLTLVLTFDNGTLTQAVTRGNGETGEDITMNARHIIGIPAKIPFEGHLV--VRGESL 196 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL----GKTS 247 + DF +N +I G K Y NPRN G +R L+ R +NFF L G S Sbjct: 197 MKYKDFERVNS-LIEDGSK-YKNPRNLCVGTVRNLDSKVTAERNINFFAFNLVSADGYES 254 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 FA E +Q + LGF GV+ ++ E + + P D GLV +D Sbjct: 255 NSFA----ERIQWLNSLGFQTVYGVKVDSSVLAEKVAEFEKDIVNNEFPSD--GLVLMLD 308 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + + LGE + +PR ++ K+ ++ A T L +I+ RTG+L PVA +PV + G Sbjct: 309 DVAYGRSLGETSHAPRNGMAFKWRDETADTTLREIEWSASRTGLLNPVAIFDPVELEGTT 368 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ A++HN +K L + +GD + + +A +IP+V+ E + Sbjct: 369 VSRASVHNVSIVKQL-----------KLGIGDTLSIYKANMIIPQVL-----ENKTGSAS 412 Query: 428 FSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + P CPIC + ++ + L ++ C A+ + R +HFV RDA NI GL Sbjct: 413 AAIPEVCPICGEKTEIKTSDDDVETLFCTNK-----ECPAKHIGRFEHFVQRDAMNIVGL 467 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 ++ F F ++ +D + L R ++ KI + GFG+ S + +++ R Sbjct: 468 STATIETFVSE---GF-VKKYSDFYHLDRFRE----KIVTMEGFGERSYQKMQEAVEASR 519 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + + R ++++GI ++G +R + Y ++N I ++ L + +G+ Sbjct: 520 HTEMSRILYAVGIPNIGRAASRLICAEY-------PDVNAIEKLTAEE---LTAIDGIGE 569 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK-NVSSEIENKKLVFTGTLQKIQ-RH 664 ++A V+F+ N N+ LL E+ I E + S I K V TG++ + R+ Sbjct: 570 VLANDYVKFFANEDNLTEYHELLTEL--DIAEPEAVSEDSPIAGKTFVITGSVNIWKNRN 627 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQF 714 + + Y+ +G VS +S KT +I D+ +K + A+ L V I+ EE+F Sbjct: 628 ELKAYIESMGGKVSGSVSSKTSYLINNDSQSNSTKNKTAKSLNVPIITEEEF 679 >gi|218659834|ref|ZP_03515764.1| NAD-dependent DNA ligase LigA [Rhizobium etli IE4771] Length = 262 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 113/236 (47%), Positives = 158/236 (66%), Gaps = 2/236 (0%) Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V AA RGDG +GE+V+A IR I IP L +P ++E+RGEVY++K+DFLALN +M A Sbjct: 1 MVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIRGEVYMAKSDFLALNRQMEA 60 Query: 208 VGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266 G++ Y NPRN A+G LR+L+ +R L FF + G+ +E+ A Q+ M+Q + GF Sbjct: 61 EGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMAEMPADTQFGMVQTFKDWGF 120 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 PVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD LQ++LG R+RSPRW Sbjct: 121 PVNPLMKRLNSVADILTHYDEIGLERPDLDYDIDGVVYKVDSLELQQRLGFRSRSPRWAT 180 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVAR-LEPVNIGGALITNATLHNEDYIKG 381 +HKF +QA T + I+IQ+GRTG LTP R L G ++TNATLHNE +G Sbjct: 181 AHKFPAEQAFTEVEKIEIQVGRTGALTPGGRGLSRSRSAGVVVTNATLHNEGLHQG 236 >gi|331092462|ref|ZP_08341286.1| DNA ligase [Lachnospiraceae bacterium 2_1_46FAA] gi|330401202|gb|EGG80794.1| DNA ligase [Lachnospiraceae bacterium 2_1_46FAA] Length = 653 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 197/697 (28%), Positives = 343/697 (49%), Gaps = 75/697 (10%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YYQ + I+ + +YD L D +A +L + N P +G E+ L K H Sbjct: 21 AYYQGATEIMSNFQYDKL---YDELAELEKELNVTL-SNSPTVNVGYEVLSELPKERHEK 76 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL+K + L++F+ QK + K+DG I + Y G+ A Sbjct: 77 PMLSLDKTKEVSSLKEFLGN-----QKA-------VISWKLDGLTIVLTYRDGELQKAVT 124 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RG+G GE ++ + IP L ++ + +RGE I DF +N+E+ K Y Sbjct: 125 RGNGEVGEVITNNAKVFKNIP--LHISYKGELVLRGEAVIGYKDFERINEEIEDADAK-Y 181 Query: 214 ANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPV-- 268 NPRN SG +R+LN +IT R + FF L K + F + E ++ + GF V Sbjct: 182 KNPRNLCSGSVRQLN-NEITAKRNVRFFAFSLVKAEGVDFKNSRNEQMRWLSQQGFDVVE 240 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 + V A+ + + ++++ ++ P D GLV D+ + + LG A+ PR + Sbjct: 241 HEEVTSADIEEKVEMFAHKIE--KNDFPSD--GLVLVYDDIAYGQSLGTTAKFPRDSFAF 296 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 K+A++ T L +I+ RTG++ PVA + V + G ++ A++HN ++ L Sbjct: 297 KWADEIRETTLREIEWSPSRTGLINPVAIFDSVELEGTTVSRASVHNISIMEEL------ 350 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV-VRDLNP 447 ++ +GD + V +A +IP++ + + D P CP+C+ + +R +N Sbjct: 351 -----ELGIGDTIQVYKANMIIPQIAENLTRSGVQD-----IPDVCPVCREKTEIRKVNN 400 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 A CT C A++++ F SRDA NI+G+ + L+ F F I+ Sbjct: 401 -----AKALYCTNP-ECQAKRIKSFALFASRDALNIDGMSEATLEKFILE---GF-IKEY 450 Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 ADIF + R ++ KI+++ GFG+ S L S+ K R +L + I+SLGI ++G A Sbjct: 451 ADIFHMDRYEE----KIKSMEGFGEKSYNKLQASVEKARTTTLPKVIYSLGIANIGLANA 506 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + + K +QN A EI N L ++ VG++IA VE++ ++ + Sbjct: 507 KMICK---EFQNNADEIMNATPER------LNQIDGVGEVIAGTFVEYFSVEKHRKEFQN 557 Query: 628 LLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKT 685 LL+E+ +I + +I + + V TG++ R++ +E + G V+ ++ KT Sbjct: 558 LLREL--TIPKESAEEGKQIFDGIQFVITGSVNHFANRNEVKEVIESKGGKVTGSVTSKT 615 Query: 686 DIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +I D + SK +KA++LG+ I++EE+FL +L++ Sbjct: 616 NYLINNDTASTSSKNKKARELGIPIISEEEFLEMLRK 652 >gi|295093347|emb|CBK82438.1| DNA ligase, NAD-dependent [Coprococcus sp. ART55/1] Length = 678 Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 192/699 (27%), Positives = 335/699 (47%), Gaps = 77/699 (11%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY I+ + EYDAL +A+ + N P K+G E+ L K H P Sbjct: 44 YYMEDTEIMSNLEYDALYDELNALEKETGMVM----SNSPTVKVGYEVVSELPKEAHEHP 99 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+K ++ L ++ QK + K+DG + + YE G+ + A R Sbjct: 100 MLSLDKTKDVGALASWLGG-----QKG-------VISWKMDGLTVVLTYENGEMIKAVTR 147 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 G+G GE ++ + +P +IP + +RGE I +DF A+N E I Sbjct: 148 GNGEIGEVITNNAKVFANVPH----HIPYKGKLTIRGEAVIKYSDFNAIN-EKITDAESK 202 Query: 213 YANPRNAASGILRRL-NPTDITRYLNFFVHGL--GKTSEIFAKGQYEMLQKMRCLGFPV- 268 Y NPRN SG +R+L N R ++FF L G+ + +Y+ L + GF V Sbjct: 203 YKNPRNLCSGSVRQLDNKITKERNVHFFAFNLVDGEDVDFHNSFKYQ-LDWLEQQGFTVV 261 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 + + + V ++E K + P D GLV +D+ + + LG A+ PR ++ Sbjct: 262 EHYLTDSAALPDKVREFSE-KITENDFPSD--GLVLMLDDLAYGRSLGTTAKFPRNAMAF 318 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 K+A+++A T L ++ RTG++ PVA +PV + G ++ A++HN +K L A G+ Sbjct: 319 KWADEEAITHLRYVEWSPSRTGLINPVAVFDPVELEGTTVSRASIHNVSILKSL-ALGE- 376 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC--QSRVVRDLN 446 GD + V +A +IP++ + + P+ CP C ++ +VR+ Sbjct: 377 ---------GDEIAVYKANMIIPQIARNLTMSGN-----VVIPAACPACGGETEIVRE-E 421 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 V CT C A++L+ H+VSR+A NI+GL + ++ F D + Sbjct: 422 GGAASGVETLYCTNQF-CPAKKLKSFSHYVSRNALNIDGLSEATIEKFI---DEKILEEL 477 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 P D++ L ++ I + GFG+ S L +++ R ++ R + LGI +VG Sbjct: 478 P-DLYKLAAHRE----HIVELEGFGEKSYNKLVAAVDASRQTNMWRLVNGLGIANVGEAT 532 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 A+ +AK++ N++ A D + + + +G +IA+ IV +++N +N ++ Sbjct: 533 AKLMAKHF---------ANDMDAMKKADVSAYVEIDGIGQVIAEDIVRYFENEKNCAIID 583 Query: 627 ALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSR 683 L+ E++ + E++++ ++ V TG+L R++ +E + G V+ +S Sbjct: 584 RLMAELTFVDEVSDTEQDLAGKV----FVITGSLTHFDNRNQLKELIESRGGQVTGSVSA 639 Query: 684 KTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 KT +I D + SK +KA+ L V I++EE FL L+ Q Sbjct: 640 KTSYLINNDVNSTSSKNKKAKSLDVPIISEEDFLELIGQ 678 >gi|153855784|ref|ZP_01996785.1| hypothetical protein DORLON_02806 [Dorea longicatena DSM 13814] gi|149751911|gb|EDM61842.1| hypothetical protein DORLON_02806 [Dorea longicatena DSM 13814] Length = 647 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 204/720 (28%), Positives = 344/720 (47%), Gaps = 89/720 (12%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 KEL SL + S YYQ ++ I+ + EYD L + +L ED N Sbjct: 2 KELVSLLNKAS---RAYYQEAQEIMSNYEYDRL----------YDELKELEDELGITLSN 48 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G E+ L K H P LSL+K +E+L+ F+ D + + Sbjct: 49 SPTVNVGYEVVSELPKERHESPMLSLDKTKEVEELKNFV----------GDQKVLISW-- 96 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + + Y GK A RG+G GE ++ + +P ++ E+I +RGE Sbjct: 97 KMDGLTVVLTYRDGKLYKAVTRGNGEVGEVITNNAKVFKNVPVQIAYQ-GELI-LRGEAV 154 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI- 249 I DF +N E+ V + Y NPRN SG +R+LN IT R + F+ L + + Sbjct: 155 IGYKDFEKINQEIEDVDAR-YKNPRNLCSGSVRQLN-NQITAKRNVMFYAFTLVQADGVD 212 Query: 250 FAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 F + ++ ++ GF V + +T V+ ++ S S + DGLV D+ Sbjct: 213 FQNSRACQMEWLKSQGFTTVEYYMVTRDTVEDEVAKFS---SKISENDFPSDGLVLTYDD 269 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + + LG A+ PR + K+ ++ T L +I+ RTG++ PVA +PV + G + Sbjct: 270 IAYGRSLGRTAKFPRDSFAFKWQDEIRETVLREIEWSPSRTGLINPVAIFDPVELEGTTV 329 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A++HN ++ L ++ +GD++ V +A +IP++ + + D Sbjct: 330 SRASVHNISIMEEL-----------ELGIGDKIEVYKANMIIPQIAENLTRSGVKD---- 374 Query: 429 SFPSFCPICQSRV-VRDL-NPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P CP+CQ +R + N K A C C A+ ++ FVSRDA NIEGL Sbjct: 375 -IPCKCPVCQGETKIRQVGNAK------ALYCMNP-ECQAKHVKSFALFVSRDALNIEGL 426 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 + L+ F I ADIF L + ++ KI+ + GFG+ S L +SI K R Sbjct: 427 SEATLEKFISRG----YIHTFADIFHLDQYKE----KIQKMEGFGEKSYKKLTESIEKAR 478 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +L R I+SLGI +G A+ + + L Y ++ +++ + ++ L + VG+ Sbjct: 479 TTTLPRVIYSLGIAGIGLANAKVICR-ELKY-----DVESLLKVSEEE---LNEIQGVGE 529 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHK 665 ++A+A V ++ + +++ LL E+ +I + E V TG+++ R + Sbjct: 530 VLAKAFVGYFADAKHVENFRRLLNEL--TIPKETVTKQQIFEGVNFVITGSVKHFANRGE 587 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +E + LG V+ ++ KT+ +I D + SK +KA +LG+ I++EE FL L+ Q T Sbjct: 588 VKELIESLGGKVTGSVTSKTNYLINNDVTSTSSKNKKANELGIPIISEETFLELVNQEET 647 >gi|34764322|ref|ZP_00145154.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27885904|gb|EAA23248.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 455 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 142/445 (31%), Positives = 233/445 (52%), Gaps = 37/445 (8%) Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL 243 +E+RGEV + +F LN+E + G + +ANPRNAASG LR+L+ + R L+ + + L Sbjct: 1 MEIRGEVVLPLANFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKERGLDAYFYFL 60 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + ++ K E ++ + +G T I + + R LPY+ DGLV Sbjct: 61 VEADKLGLKSHSESIKFLESMGIKTTGIFELLETSKDIEKRIDYWEKERENLPYETDGLV 120 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 KVDE +L ++G +++PRW I++KF Q ST L + Q+GRTG LTPVA L+ V + Sbjct: 121 IKVDEINLWNEIGYTSKTPRWAIAYKFPAHQVSTILNGVTWQVGRTGKLTPVAELQEVEL 180 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G+ + A+LHN I+ +DIR+GDRV +++A E+IP+VV I +R Sbjct: 181 SGSKVKRASLHNISEIQ-----------RKDIRIGDRVFIEKAAEIIPQVVKSIKEDRTG 229 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + + P CP+C ++ R+ + + +C C A+ +++FVSRDA NI Sbjct: 230 NEKVIEEPINCPVCNHKLERE------EGLVDIKCVNE-ECPAKVQGEIEYFVSRDALNI 282 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 GLG + ++ F D + I+ DI+ L+ ++ +ENI G S+ NL +SI Sbjct: 283 MGLGSKIVEKFI---DLGY-IKTVVDIYDLKNHREA----LENIDKMGKRSIENLLNSIE 334 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 + +N ++ I++LGI +G ++ LAK NI N + L + Sbjct: 335 ESKNRDYDKVIYALGIAEIGKVTSKILAKAS----------KNIDKLMNMTFEELTSIEG 384 Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL 628 +G I A I+ F++ +N +E+L Sbjct: 385 IGXIAANEIIAFFKKEKNQKIIESL 409 >gi|291460667|ref|ZP_06600057.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str. F0262] gi|291416626|gb|EFE90345.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str. F0262] Length = 664 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 194/708 (27%), Positives = 337/708 (47%), Gaps = 91/708 (12%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLF 87 YYQ I+ + EYD L + +L E G P ++G E+ L Sbjct: 19 AYYQDGDEIMSNLEYDKL----------YDELQGLERETGIVLSASPTERVGYELLSELP 68 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 KV H P LSL+K + E L +++ D + L K+DG I + YE G+ Sbjct: 69 KVRHLSPMLSLDKTKSPEALAEWLG---------DREGL---LSWKLDGLTIVLNYEGGE 116 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V RG+G GE V+ +R +P + + ++ RGE I +DF +ND ++ Sbjct: 117 LVRGVTRGNGEIGELVTQNVRVFDNVPTRIPFSGSLVL--RGEALIRYSDFERINDGILD 174 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL-----GKTSEI-FAKGQYEMLQ 259 + Y NPRN +G +R+L+P IT R++ L G S + F + + Sbjct: 175 AEAR-YKNPRNLCAGSVRQLDP-GITKERHVKLLAFSLVSAKEGDGSPVDFQNSRRRQFE 232 Query: 260 KMRCLGFPVNNG--VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 +R GF V VR + ++ +K + P D GLV +D+ + + LG Sbjct: 233 FLREQGFSVVEYRLVRGGEVLAAVKAFSERVKD--NDFPSD--GLVLLLDDIAYGESLGR 288 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 A+ PR ++ K+ +++A T L +++ RTG++ PVA +PV + G ++ A+LHN Sbjct: 289 TAKFPRNALAFKWRDEEAETVLREVEWSPSRTGLINPVAIFDPVELEGTTVSRASLHNLS 348 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 + + L + +GDRV V +A +IP+ ++E + S PS CP C Sbjct: 349 FCEEL-----------SLGLGDRVSVYKANMIIPQ-----LSENFTKSGTLSPPSRCPAC 392 Query: 438 --QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 ++ V +D K K + C A+++++ FVSRDA NIEGL + L+ F Sbjct: 393 GEETEVRKD---KGAKFLYCKNPD----CPAKRIKKFSLFVSRDALNIEGLSEMTLEKFI 445 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 F I+ D++ L+R ++ +I ++ GFG+ S L +++ K R+ L I+ Sbjct: 446 GH---GF-IKSYRDLYHLERHRE----EILSMEGFGERSYERLMEAVEKSRDTLLYHLIY 497 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 LGI +G AR L ++ F QE++ I ++ L+ V +G+++A+ + + Sbjct: 498 GLGIDGIGLANARLLCRH------FHQELSLIRGAEKEE---LLEVDGIGEVLAEKLYAY 548 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLG 674 + + + + + LL E+ + + K +V TG L + R + +E + + G Sbjct: 549 FHSEKQLSELHELLPELRIGREEEREEEGGALRGKTIVITGNLTHFENRKELEEEILRAG 608 Query: 675 AVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S +S+KT ++ D+ K +KA++LG+ I+ EE+FL +L + Sbjct: 609 GKCSGSVSKKTSYLVNNDSSSQSGKNKKAKELGIPIVTEEEFLKILGE 656 >gi|154503603|ref|ZP_02040663.1| hypothetical protein RUMGNA_01427 [Ruminococcus gnavus ATCC 29149] gi|260589901|ref|ZP_05855814.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583] gi|153795703|gb|EDN78123.1| hypothetical protein RUMGNA_01427 [Ruminococcus gnavus ATCC 29149] gi|260539708|gb|EEX20277.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583] gi|291547890|emb|CBL20998.1| DNA ligase, NAD-dependent [Ruminococcus sp. SR1/5] Length = 671 Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 203/725 (28%), Positives = 322/725 (44%), Gaps = 86/725 (11%) Query: 20 ELSSLE---QEISYHD---DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED--- 70 ELS++E Q + Y + + YY + P I D+EYD + F +L E Sbjct: 6 ELSNVEKIKQLVDYLNLQRNAYYNENSPNISDAEYDRI----------FDELVELEKQTG 55 Query: 71 ---PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 N P +G L KV H +P LSL+K ++DL F + + Sbjct: 56 FILSNSPTQTVGYTPISELPKVKHPVPLLSLDKTKQVQDLISFAGK----------QPVL 105 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 F L K+DG + YE G V A+ RGDG GE ++ I A +P LS+ + + Sbjct: 106 FML--KLDGLTTKLVYENGTLVEASTRGDGEIGELITHNIPAYVDVP--LSIPYKGRLVI 161 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF----VHG 242 GE +I +DF L + + +PY N RN ASG +R L+P + R L+F + G Sbjct: 162 VGESFIPTHDFERLKETLRDGKGEPYKNGRNLASGSVRSLDPANCAGRCLHFMPFNVLEG 221 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGF-PVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 L + +F + + + GF P T + Y + + ID Sbjct: 222 L-DSPFLFPDSRAMKISSLFDYGFQPCPYIAANHPLTSELVNQYIERLTDLAGKKHLPID 280 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V D K G + ++ KF ++ T L +I+ R G + PV +P Sbjct: 281 GIVMIFDSLDYSKNCGRTGHHYKDGLAFKFEDETYETTLRNIEWTPTRFGEIAPVGVFDP 340 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V I G ++ ATLHN +IK L+ + G R+ V + +IP + + + Sbjct: 341 VEIDGCSVSRATLHNLTFIKELE-----------LVPGCRISVSKRNMIIPHIEENLERG 389 Query: 421 RHPDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + DA P CP C S+ + G+L+ C C +Q +R HFV + Sbjct: 390 HYVDA----VPPVCPCCGSQTRIYQRKGNDGRLIETVHCDNP-NCDSQIRKRFTHFVGKK 444 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NIEGL + L+ F ++ DI+ L Q+ +I + GFG S L+ Sbjct: 445 AMNIEGLSETTLEKFLT----LGYLQTFPDIYHLNEHQE----EILQLEGFGKKSFERLW 496 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSL-AKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +SI RN + RF+ S+ I VG +R L ++ S Q F A + D+ L Sbjct: 497 NSITSSRNTTFVRFLVSMDIPMVGRTKSRILDTVFHGSLQEFFDA-----ASGDYDFTQL 551 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK-----KLV 653 GD + Q I +++ + N+ L KE+ I K +++ ++ +V Sbjct: 552 DDF---GDTLNQNIHDWFSDENNLILWHELQKEL---IFEERKEMNTMMKENVFTGCTIV 605 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TG L R + + +LGA + +++KTD +I G+ GSKL KAQ LG+KI++E++ Sbjct: 606 ATGKLAHFTRDEINSKILELGAKAGSSVTKKTDYLICGEKAGSKLAKAQSLGIKILSEDE 665 Query: 714 FLFLL 718 FL ++ Sbjct: 666 FLEMI 670 >gi|284047072|ref|YP_003397412.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684] gi|283951293|gb|ADB54037.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684] Length = 670 Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 198/729 (27%), Positives = 337/729 (46%), Gaps = 92/729 (12%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQAR +L +I +H Y + P ++D++YDAL+ A+ A P++ ++P Sbjct: 7 EQAR----ALAAQIDHHRGLYAR-GAPALVDADYDALEDELRALLAASPEVVLDDNP--- 58 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 L++ + + HS P LSLEK E L F R F + PK+ Sbjct: 59 LDRPWAPELVPGQTIRHSRPMLSLEKATTAEQLDAFCARF---------PGQAFRVTPKL 109 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG I I Y+ G+ Y A RGDG GE V+ R + + L+L +EVRGE + Sbjct: 110 DGISIAIVYQDGELEYVATRGDGRDGERVTDKARLV-VLGLPLTLGAAGRVEVRGEAVML 168 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT---RYLNFFVHGLGKTSEIFA 251 + + A ND A +P NPR+AA+G +P R L FF L + +E+ Sbjct: 169 DSIWRAYND---AHPDRPLTNPRSAAAGTFVVKSPEACVAEGRTLRFFAFDLDE-AEV-- 222 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 ++ +++ LGF V + V A + ++ + R + IDG V ++ Sbjct: 223 -SDGDVSERLVALGFEVPD-VLPAADAEQARAAIEQVAARRGEYDFGIDGAVVRLASRRA 280 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + G + +PR ++ K+ ++ +T L + +G+ G + P A+++PV +GG +T A Sbjct: 281 FEAAGATSSAPRGALAWKYPAEERTTVLRAVTWPVGKIGRVVPRAQVDPVFVGGTTVTFA 340 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 +LHN ++ RDIR+GD V + R G+VIP + +V +R D P Sbjct: 341 SLHNPRLVR-----------ERDIRIGDTVRIMRRGDVIPFIAGSVVEQRTGDEVEIELP 389 Query: 432 SFCPICQSR-VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 + CP C + VVR TG+ + L C AQ + RL H+ SR A ++EG+G Sbjct: 390 THCPSCGTELVVR----GTGEELWCEN----LQCPAQAVRRLIHWSSRHASDMEGVGNTW 441 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYDSINKRRN 547 ++ +ED + P+D + L +E ++G+ G+VS + SI++ R Sbjct: 442 IEKL--AEDGV--LERPSDFYAL---------TVEQLVGYERMGEVSANAMVASIDRSRG 488 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 + L R + L I +A+ L F + I I+ ++ L IR +G Sbjct: 489 VGLRRALIGLAIPMASEGVAKR-----LCLAGF-ERIEEIVERTAEE-LEAIRD--IGPK 539 Query: 608 IAQAIVEFYQNP---RNICAVEALLKEVSPSIGRHEKNV------SSEIENKKLVFTGTL 658 +A ++V ++ P +CA+ A V + ++ + + ++ +V TG Sbjct: 540 VAASMVAYFARPEVQEELCALRA--AGVDLDVRDEDRPIEVADAAETPLKGATVVVTGAF 597 Query: 659 ------QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNE 711 K+ R + Q GA + +S T ++I G N G +K +KA +LGV+++++ Sbjct: 598 ADPDSGAKVARPAVVRLLEQAGATSVSSVSATTTMLIAGSNVGAAKTDKAARLGVQVVDQ 657 Query: 712 EQFLFLLQQ 720 EQ L + Sbjct: 658 EQAWDWLAE 666 >gi|197301582|ref|ZP_03166655.1| hypothetical protein RUMLAC_00308 [Ruminococcus lactaris ATCC 29176] gi|197299312|gb|EDY33839.1| hypothetical protein RUMLAC_00308 [Ruminococcus lactaris ATCC 29176] Length = 662 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 196/664 (29%), Positives = 328/664 (49%), Gaps = 81/664 (12%) Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P +G E+ L K H P LSL+K +E L++F+ KK + Sbjct: 65 NSPTVNVGYEVVSGLPKERHERPMLSLDKTKEVERLKEFLG------TKKA------MIS 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVR 188 K+DG I + Y+ G+ V A RG+G GE ++ + +P L+IP E++ +R Sbjct: 113 WKLDGLTIVLTYQGGELVKAVTRGNGIEGEVITNNAKVFQNVP----LHIPYQGELV-LR 167 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246 GE IS DF A+N+++ V K Y NPRN SG +R+LN +IT R + FF L + Sbjct: 168 GEAVISYKDFEAINEKIEDVDAK-YKNPRNLCSGSVRQLN-NEITAKRNVKFFAFTLVRA 225 Query: 247 SEI-FAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSI-RSTLPYDIDGLV 303 E+ F + +Q ++ GF V + A T V+++ K+I ++ +P D GLV Sbjct: 226 EEVDFHNSRMYQMQWLKEQGFDVVEHHPVTAETIEEEVAWF--AKAIGKNEIPSD--GLV 281 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 D+ + + LG A+ PR + K+A++ T LL+I+ RTG++ PVA EPV + Sbjct: 282 LVYDDIAYGQSLGTTAKFPRDSFAFKWADEIRETTLLEIEWSPSRTGLINPVAVFEPVEL 341 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ A++HN ++ L ++ VGD + V +A +IP++ + + Sbjct: 342 EGTTVSRASVHNISIMEEL-----------ELGVGDTIQVYKANMIIPQIAENLTRSGVK 390 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D P+ CP+C + +T L CT C A+ ++ FVSRDA NI Sbjct: 391 D-----IPTVCPVCGGTTKISMENETKTLF----CTNP-ECQAKHVKAFSLFVSRDAMNI 440 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGL + L+ F ++ D+F L R ++ +I+++ GFG+ S L +I Sbjct: 441 EGLSEATLEKFILHG----YVKDFTDLFHLDRYEE----EIKSMDGFGEKSYQKLLRNIE 492 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R +L R I+SLGI ++G+ A+ + K + A+E L+ + Sbjct: 493 NARKTTLARLIYSLGIPNIGSANAKVICKAFGDDPKRAEEATE---------EELVEIQG 543 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK----KLVFTGTLQ 659 +G I+A+ VE++ +P++ LL EV +K V +E K V TG+++ Sbjct: 544 IGGIMAKTYVEYFADPKHREIYRRLLDEV-----ELQKEVVTEDSQKFSGINFVITGSVE 598 Query: 660 KI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLF 716 R + + + + G V+ ++ KT +I D + SK +KA++LGV I++EE + Sbjct: 599 HFANRAEVKAEIEKRGGKVTGSVTSKTGYLINNDVNSTSSKNKKARELGVPIISEETLIG 658 Query: 717 LLQQ 720 +L+Q Sbjct: 659 MLEQ 662 >gi|325261872|ref|ZP_08128610.1| DNA ligase, NAD-dependent [Clostridium sp. D5] gi|324033326|gb|EGB94603.1| DNA ligase, NAD-dependent [Clostridium sp. D5] Length = 651 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 201/699 (28%), Positives = 333/699 (47%), Gaps = 85/699 (12%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAF-PDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 Y Q I+ + EYD L + LA S P +G E+ L K H Sbjct: 22 YEQEDTEIMSNYEYDKLYDELLGLEQELGTTLASS-----PTINVGYEVLSELPKERHER 76 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 P LSL+K ++E L+ F+ D ++ + K+DG I + Y V A Sbjct: 77 PMLSLDKTKDVEQLKTFL---------GDKEAV---ISWKLDGLTIVLTYRDKTLVKAVT 124 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRGEVYISKNDFLALNDEMIAVGR 210 RG+G GE ++ + +P ++IP E+I +RGE I DF +N E+ V Sbjct: 125 RGNGEVGEVITNNAKVFKNLP----MHIPFDGELI-LRGEAVIGYKDFEKINAEIEDVDA 179 Query: 211 KPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFP 267 K Y NPRN SG +R+LN +IT R + FF L + + F + E + GF Sbjct: 180 K-YKNPRNLCSGSVRQLN-NEITAKRNVRFFAFSLVSAAGVDFKNSRTEQFDWLEKQGFE 237 Query: 268 V-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 V + + A+T V ++ + + P D GLV D+ + + LG A+ PR Sbjct: 238 VVEHHLVTADTIEEQVEWF-AGEIAENDFPSD--GLVLVYDDIAYGQSLGSTAKFPRDSY 294 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 + K+A++ T LL+I+ RTG++ PVA EPV + G ++ A++HN ++ L Sbjct: 295 AFKWADEIRDTTLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNLSIMEEL---- 350 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC--QSRVVRD 444 ++ VGD + V +A +IP++ + + D PS CP+C +R+ + Sbjct: 351 -------ELGVGDEIQVYKANMIIPQIAENLTRSGVKD-----IPSACPVCGHDTRISME 398 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 + KT CT C A+Q++ FVSRDA N+EGL + L+ F F I Sbjct: 399 NDTKT------LYCTNP-QCQAKQIKSFALFVSRDALNMEGLSEATLEKFIAR---GF-I 447 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 + DIF L R ++ +I+ + GFG+ S NL +S+ RN +L + ++SLGI ++G Sbjct: 448 KDYIDIFHLDRYEE----EIKTMDGFGEKSYVNLINSVENSRNTTLPKLVYSLGIANIGL 503 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP--RNI 622 A+ + + + N Q++ L + VG +IA+ V+++ +P R + Sbjct: 504 ANAKMICR---ALGNDPQKLTEATVE------ELSEISGVGGVIAKTFVDYFADPGHREL 554 Query: 623 CAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAIL 681 A E+ + E + EN V TG+++ R++ +E + G V+ + Sbjct: 555 FARLLEEVEIPVEEVQAEAQI---FENMNFVITGSVEHFANRNEVKELIESRGGKVTGSV 611 Query: 682 SRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 + KT+ +I D + SK +KA+ L + I++EE+FL +L Sbjct: 612 TSKTNYLINNDVQSASSKNKKARDLEIPIISEEEFLKML 650 >gi|323695090|ref|ZP_08109232.1| DNA ligase [Clostridium symbiosum WAL-14673] gi|323500845|gb|EGB16765.1| DNA ligase [Clostridium symbiosum WAL-14673] Length = 663 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 204/717 (28%), Positives = 338/717 (47%), Gaps = 82/717 (11%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +IE + L +S YYQ S+ I+ + EYD L + +LA E Sbjct: 7 AIENKTARIRELVDTLSAAGRAYYQESREIMSNFEYDRL----------YDELAELEKET 56 Query: 73 G------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 G P +G E+ SL K H P LSL K ++E+L++++ D + Sbjct: 57 GIVFAGSPTQNVGYEVMSSLPKERHEKPMLSLNKTKSVEELQEWL---------GDQKGL 107 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 L K+DG I + YE G A RG G GE ++ + +P L++ + Sbjct: 108 ---LSWKMDGLTIVLTYEGGTLAKAVTRGSGEIGEVITNNAKVFANVP--LNIGFTGQLI 162 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244 +RGE I +DF +N ++ V K Y NPRN SG +R+LN +IT R + F+ L Sbjct: 163 LRGEAVIRYSDFEKINAQIEDVDAK-YKNPRNLCSGSVRQLN-NEITARRNVRFYAFSLV 220 Query: 245 KTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + F + + + + GF V + +T G V +++ S + +P D GL Sbjct: 221 MADGVDFGNSRKKQFEWLCSQGFEVVDYKEVTRDTLPGKVQEFSDAVS-GNDIPSD--GL 277 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V D+ + LG A+ PR I+ K+ ++ T L I+ RTG++ PVA EPV Sbjct: 278 VLLYDDIEYGQSLGRTAKFPRDSIAFKWMDEIQETTLSYIEWSASRTGLINPVAVFEPVE 337 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ A++HN ++ L ++ VGD++ V +A +IP++ + + Sbjct: 338 LEGTTVSRASVHNLSIMEAL-----------ELGVGDKITVYKANMIIPQIAENLTKSGV 386 Query: 423 PDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 D P CP+C + +R +N V + CT C A++++ F SRDA Sbjct: 387 KD-----IPKHCPVCGADTEIRQIND-----VKSLYCTNP-DCQAKKIKSFTLFASRDAL 435 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI GL + L+ K F I ADIF L R +Q +I + GFG S NL S Sbjct: 436 NIGGLSEATLE---KMIGVGF-IHEYADIFHLDRYEQ----EIVTMDGFGQKSYDNLIAS 487 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + K +L R ++SLGI +G A+ L + + N+ A + L+ V Sbjct: 488 VKKASETTLPRVVYSLGISGIGLANAKMLCRRFK---------NDFAAMRKAEKEELVAV 538 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +GD++A A ++F+ + +N V+ LL E++ E+ + V TG+++ Sbjct: 539 DGIGDVLADAWIDFFSSEKNNEIVDHLLDELTIEETAEEEEAEGVFDGISFVITGSVEHF 598 Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFL 715 + R + QE + Q G V+ ++ KT+ +I D SK +KA++LG+ I++E++F+ Sbjct: 599 KNRKEIQEIIEQKGGKVTGSVTAKTNYLINNDTASSSSKNKKAKELGIPIISEQEFI 655 >gi|167769644|ref|ZP_02441697.1| hypothetical protein ANACOL_00978 [Anaerotruncus colihominis DSM 17241] gi|167668005|gb|EDS12135.1| hypothetical protein ANACOL_00978 [Anaerotruncus colihominis DSM 17241] Length = 674 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 194/718 (27%), Positives = 325/718 (45%), Gaps = 83/718 (11%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNK 77 L ++ + D YY + P + D YD L F +L E G P Sbjct: 12 LNDRLNRYRDEYYNRNAPSVSDEVYDRL----------FDELKELEQETGIQMANSPTQT 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G L K H IP LSL+K + DL F+ + + L K+DG Sbjct: 62 VGYPAVSRLEKTRHEIPLLSLDKTKSSMDLLNFMG----------EQQVMLML--KLDGL 109 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G+ + AA RGDG GE ++ RAI IP ++ E + V GE +I +D Sbjct: 110 TVKLTYENGELLEAATRGDGDEGEIITHNTRAISGIPSHITYK--ERLVVTGEGFIRPSD 167 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYE 256 F L + KPY N RN A+G +R ++ T R L F G+ + + + + Sbjct: 168 FEELKTSLQDSSGKPYKNGRNLAAGSIRLMDAKTCQERRLVFMPFGVLEGFPHLTR-KSD 226 Query: 257 MLQKMRCLGF-PVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 L+++R LGF P V +Q T + + +++ + IDG+V ++ + + Sbjct: 227 KLRELRALGFQPCKYLVTKQKLTLENVEAGIYQLRQYATDKDIPIDGIVVSFNDIAYAQS 286 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 G + +++KF + + L I+ GRTG + PVA PV I G ++ A+LH Sbjct: 287 CGRTGHHYKDGLAYKFEDDLHESLLQYIEWTPGRTGEIAPVAVFTPVEIDGCEVSRASLH 346 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF---- 430 N +I+ L+ + G+R+LV + +IP V E + D FS Sbjct: 347 NLSFIEDLE-----------LMAGNRILVSKRNMIIPHV------EENLDRGGFSMADTI 389 Query: 431 PSFCPIC-QSRVVRDLNPKTGK----LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP C Q + + + K K ++ C C ++L++ HFVS+ A IEG Sbjct: 390 PHVCPCCGQPTRIHESSGKGEKSEDRIIKTLYCDNP-DCETRRLKKFVHFVSQKAMEIEG 448 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 L + L+ F F I DI+ L R + +I + GFG+ S L+D+I + Sbjct: 449 LSEATLEKFIGQ---GF-IHSYLDIYRLDRYR----AEIVRMDGFGEKSWQRLWDAIQQS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAK-YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RN + ER++ S+ I +G ++ L + ++ F + + D+ L P Sbjct: 501 RNTTFERYLISMDIPMIGNTASKVLGRVFHYDLDEFRDAV-----YGGYDFRQL---PDF 552 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSE--IENKKLVFTGTLQ 659 G+ + I +++ N C E L ++ P++ H ++ + K +V TG ++ Sbjct: 553 GETLHNNIHDWFCVEDNFCIWEELQTMMNIQKPAVAEHSEDRVQDNPFVGKTIVVTGKVE 612 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 R + + LGA + +S+KTD ++ G+N GSKL KA+ LGV +++ +F + Sbjct: 613 PYTRDGINDLIESLGAHAGSSVSKKTDYLVCGENAGSKLSKARDLGVTVLSPAEFFSM 670 >gi|323485704|ref|ZP_08091041.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum WAL-14163] gi|323400967|gb|EGA93328.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum WAL-14163] Length = 663 Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 204/717 (28%), Positives = 337/717 (47%), Gaps = 82/717 (11%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 +IE + L +S YYQ S+ I+ + EYD L + +LA E Sbjct: 7 AIENKTARIRELVDTLSAAGRAYYQESREIMSNFEYDRL----------YDELAELEKET 56 Query: 73 G------PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 G P +G E+ SL K H P LSL K ++E+L++++ D + Sbjct: 57 GIVFAGSPTQNVGYEVMSSLPKERHEKPMLSLNKTKSVEELQEWL---------GDQKGL 107 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 L K+DG I + YE G A RG G GE ++ + +P L++ + Sbjct: 108 ---LSWKMDGLTIVLTYEGGTLAKAVTRGSGEIGEVITNNAKVFANVP--LNIGFTGQLI 162 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244 +RGE I +DF +N ++ V K Y NPRN SG +R+LN +IT R + F+ L Sbjct: 163 LRGEAVIRYSDFEKINAQIEDVDAK-YKNPRNLCSGSVRQLN-NEITARRNVRFYAFSLV 220 Query: 245 KTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + F + + + + GF V + +T G V +++ S + +P D GL Sbjct: 221 MADGVDFGNSRKKQFEWLCSQGFEVVDYKEVTRDTLPGKVQEFSDAVS-GNDIPSD--GL 277 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V D+ + LG A+ PR I+ K+ ++ T L I+ RTG++ PVA EPV Sbjct: 278 VLLYDDIEYGQSLGRTAKFPRDSIAFKWMDEIQETTLSYIEWSASRTGLINPVAVFEPVE 337 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G ++ A++HN ++ L ++ VGD++ V +A +IP++ + + Sbjct: 338 LEGTTVSRASVHNLSIMEAL-----------ELGVGDKITVYKANMIIPQIAENLTKSGV 386 Query: 423 PDAQPFSFPSFCPICQSRV-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 D P CP+C + +R +N V + CT C A++++ F SRDA Sbjct: 387 KD-----IPKHCPVCGADTEIRQIND-----VKSLYCTNP-DCQAKKIKSFTLFASRDAL 435 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI GL + L+ K F I ADIF L R +Q +I + GFG S NL S Sbjct: 436 NIGGLSEATLE---KMIGVGF-IHEYADIFHLDRYEQ----EIVTMDGFGQKSYDNLIAS 487 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + K +L R ++SLGI +G A+ L + + N+ A L+ V Sbjct: 488 VKKASETTLPRVVYSLGISGIGLANAKMLCRRFK---------NDFAAMRKAKKEELVAV 538 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +GD++A A ++F+ + +N V+ LL E++ E+ + V TG+++ Sbjct: 539 DGIGDVLADAWIDFFSSEKNNEIVDHLLDELTIEETAEEEEAEGVFDGISFVITGSVEHF 598 Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFL 715 + R + QE + Q G V+ ++ KT+ +I D SK +KA++LG+ I++E++F+ Sbjct: 599 KNRKEIQEIIEQKGGKVTGSVTAKTNYLINNDTASSSSKNKKAKELGIPIISEQEFI 655 >gi|226325717|ref|ZP_03801235.1| hypothetical protein COPCOM_03530 [Coprococcus comes ATCC 27758] gi|225205841|gb|EEG88195.1| hypothetical protein COPCOM_03530 [Coprococcus comes ATCC 27758] Length = 687 Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 202/732 (27%), Positives = 322/732 (43%), Gaps = 112/732 (15%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 K + +L ++++ + YY P++ D+EYD L F +L E+ N Sbjct: 30 KRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRL----------FDELKELEEQTGFILSN 79 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P +G L KVTH IP LSLEK K I+ + F + ++ + F L Sbjct: 80 SPTQTVGYYPVSELAKVTHPIPLLSLEKT-------KLISELLDFMKGQE---VLFML-- 127 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGE 190 K+DG + YE G+ + A+ RGDG GED++ I A +P L IP E + + GE Sbjct: 128 KLDGLTTKLIYEDGRLIQASTRGDGEVGEDITHNIPAFLNVP----LTIPHKERLVITGE 183 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI----TRYLNFFVHGLGKT 246 +I NDF L D + KPY N RN ASG +R L+P + R+L F V G Sbjct: 184 SFIPTNDFERLKDTLRDGNGKPYKNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLE-GME 242 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYY-----NEMKSIRSTLPYDIDG 301 F + L+ + LGF + T G+ Y E+ S + L IDG Sbjct: 243 DVPFPDSRACKLEGLTHLGFGYCPFFSISGT--GLSKEYAEKFIQELVSTAANLHLPIDG 300 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V D S K G+ + +++KF + T L +I+ R G + PV + V Sbjct: 301 IVMIFDSLSYSKSCGKTGHHYKDGLAYKFEDDTYETFLREIEWTPTRFGEIAPVGIFDTV 360 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 I G ++ A+LHN +IK L ++ G R+LV + +IP + D + R Sbjct: 361 EIDGCDVSRASLHNLTFIKNL-----------ELVPGCRILVSKRNMIIPHIEDNLDRGR 409 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKT--GKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 + D P CP C S+ R + KT G+ V C C +Q R HF S+ Sbjct: 410 YTDIT----PPVCPCCGSK-TRTYSRKTSDGRTVETLHCDNP-QCDSQITRRFVHFASKK 463 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NIEGL + L+ F + DI+ L+ ++ I + G+G+ S L+ Sbjct: 464 AMNIEGLSEATLEKFLN----LGYLHSFQDIYHLEEHRE----DIVALDGYGEKSFDRLW 515 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY-----------LSYQNFAQ--EINN 586 +SIN R S R++ S+ I +G +R L + + +F Q + Sbjct: 516 ESINASRRTSFVRYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQAAVGDYDFTQLEDFGE 575 Query: 587 IIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 I+ HN W + +A ++ ++N +N E R E+ + ++ Sbjct: 576 ILNHNIHSWFA-----------DEANLDLWKNLQNEFTFEQ----------RKEETIMTK 614 Query: 647 IENK----KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 ENK +V TG L+ R + + +LGA + +++KTD +I G+ P + +K + Sbjct: 615 -ENKFTGCTIVATGKLEHFTRDGINDKILELGAKPGSSVTKKTDYLICGEKPAANWQKPR 673 Query: 703 QLGVKIMNEEQF 714 L + + + F Sbjct: 674 ALVFQFLQKLNF 685 >gi|295110374|emb|CBL24327.1| DNA ligase, NAD-dependent [Ruminococcus obeum A2-162] Length = 624 Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 197/689 (28%), Positives = 329/689 (47%), Gaps = 86/689 (12%) Query: 47 EYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLFKVTHSIPTLSLEK 100 EYDAL + +L ++E G P ++G E +L K TH P LSL+K Sbjct: 5 EYDAL----------YNELEQTEKITGIVLADSPTVRVGYEAVDALPKETHDSPMLSLDK 54 Query: 101 IWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSG 160 E LR F+ S L K+DG I + YE G+ A RG+G G Sbjct: 55 TKEKEVLRGFV------------GSHKTLLSWKMDGLTIVLTYENGELQKAVTRGNGIVG 102 Query: 161 EDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220 E ++ R IP L + + +RGE I+ +DF +N+ + V K Y NPRN Sbjct: 103 EVITNNARVFRNIP--LKIAYQGRLVLRGEAIITYSDFERINNSIEDVDAK-YKNPRNLC 159 Query: 221 SGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEM-LQKMRCLGFPV-NNGVRQAN 276 SG +R+LN IT R + F L ++ E ++ +R GF V V + Sbjct: 160 SGSVRQLN-NQITAERNVRFLAFALVSAQDVDMHNSREFQMEWLRTQGFEVVEYRVVTSE 218 Query: 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQAS 336 + Y+ E + T + DGLV D+ + + LG A+ PR + K+A++ Sbjct: 219 NLDEAMDYFAERIT---TNDFPSDGLVALYDDIAYGESLGSTAKFPRNAFAFKWADEVRE 275 Query: 337 TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIR 396 T L +I+ RTG++ PVA +PV + G ++ A++HN +K L + Sbjct: 276 TTLREIEWSPSRTGLINPVAVFDPVELEGTTVSRASVHNVSIVKEL-----------KLG 324 Query: 397 VGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC--QSRVVRDLNPKTGKLVA 454 +GD + V +A +IP++ E + P+ CP+C ++RV+R+ + V Sbjct: 325 IGDTIQVYKANMIIPQIA-----ENLTQSGKLEIPNTCPVCGQEARVIREND------VE 373 Query: 455 AHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQ 514 A C C A++++ FVSRDA NI+GL + L+ F F I DIF ++ Sbjct: 374 ALYCMNP-DCVAKKIKAFTLFVSRDAMNIDGLSEATLEKFIAK---GF-IHNFGDIFEIE 428 Query: 515 RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYY 574 + + +I + GFG+ S NL SI K + +L + I+SLGI ++G A+ + +Y Sbjct: 429 KYRD----EIVMMDGFGEKSFDNLISSIEKAKKTTLAKVIYSLGISNIGLSNAKVICRY- 483 Query: 575 LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP 634 F +++ I + ++ + + +G +IA ++ +++ N V+ LL + Sbjct: 484 -----FDDDLDKIRSAKEEE---ISAIDGIGPVIAGSLTKYFAKSENNQKVDHLLGYL-- 533 Query: 635 SIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692 I + EK+ + V TG+L+ R +A+ + LG V+ ++ KT+ +I D Sbjct: 534 HIVKEEKSDNQIFAGMNFVITGSLEHFSNRGEAKNLIESLGGKVTGSVTGKTNYLINNDV 593 Query: 693 -NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + SK +KA++LG+ I++EE FL L ++ Sbjct: 594 TSNSSKNKKARELGIPILSEEDFLKLTEE 622 >gi|227875717|ref|ZP_03993845.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243] gi|269976734|ref|ZP_06183710.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1] gi|227843659|gb|EEJ53840.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243] gi|269935099|gb|EEZ91657.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1] Length = 917 Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 158/554 (28%), Positives = 268/554 (48%), Gaps = 88/554 (15%) Query: 1 MKKRQLIPIEALSIEQARKEL-SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 M+K++ IP + I+ +EL + +E + + D ++ + D++YDAL R + Sbjct: 1 MRKKREIPPQ---IQNEHQELVAQIEAARADYYDNPDEHGVTRLSDADYDALFVRLQLLE 57 Query: 60 HAFPDLARSEDPNG----------------------------PLNKIGGEMNLSLFKVTH 91 ++P L + P P N + TH Sbjct: 58 GSYPALVTPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENAVAVATTEGFPPHTH 117 Query: 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 + S++ +++ ++ + R+ + + K + E K+DG +++ Y G+ + Sbjct: 118 AKRMQSIDDVFSTAEVDAWWERVEKGLEGK---PFTVSAEVKVDGLAMSLTYVDGQLMTG 174 Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDE------ 204 A RGDG GEDV+A +R I T+P+ L IP ++E+RGEVY+ DF +N E Sbjct: 175 ATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMNAEREANNA 234 Query: 205 -------------MIAVGRKP-YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249 + + + P +ANPRNAA+G L++ + + R L F HGLG + Sbjct: 235 AWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAHGLGAV-QG 293 Query: 250 FAKG------QYEMLQKMRCLGFPV------NNGVRQAN--TFHGIVSYYNEMKSIRSTL 295 + G Q + +++ G P + G+R A T + + M R Sbjct: 294 WPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAMTEHRHDF 353 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 + IDG+V KVD + + LG AR+PRW ++KF ++ TRLL I++Q+GRTG +TP Sbjct: 354 SHQIDGVVLKVDNLAARVLLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGRTGRVTPF 413 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A +E V + G+ ++ ATLHN + +V R +D+R GD V++++AG++IP+V+ Sbjct: 414 AVMERVLVDGSYVSRATLHN---------AKEVAR--KDVRPGDTVVLRKAGDIIPEVLG 462 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 +++ R + P CP C +R+ ++ K G + RC C AQ ERL H Sbjct: 463 PVLSLRPGGLPEWVMPEMCPSCGTRLGQE---KEGDI--DLRCPNQAGCPAQITERLIHV 517 Query: 476 VSRDAFNIEGLGKQ 489 +R A +IEGLG++ Sbjct: 518 GARGALDIEGLGEE 531 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 72/321 (22%), Positives = 115/321 (35%), Gaps = 90/321 (28%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--FGD 532 FV R+ G QQ+ FF+ P A F L + LG Sbjct: 607 FVWREVPGTAGRDWQQVRFFWAK--PKRVTAAEAATFGL----------VAGELGEPVAG 654 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA----------Q 582 +V ++ + R+ R + +L IRH+G AR++A+ + + A + Sbjct: 655 KTVETFFNQLAAARSKETWRVLVALSIRHLGPVAARAVARRFPTLAAVAAADVEGLSQVE 714 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDI----------------------------------- 607 + +IA + DW RVP +I Sbjct: 715 GVGAVIAASVVDWF---RVPWHQEIVLAWTQAGLGLGLRDFGVGLASASRGASPGVDSGG 771 Query: 608 -------------IAQAIVEFYQ---NPRNICAVEALLKEVSPSI-----GRHEKNVSSE 646 ++ VE Q P N +EA + P+ G +N SS Sbjct: 772 IQPDLFSDFGTGHVSGGDVESGQAPHEPANPGGIEASWGQNFPAAKGSAPGMSAQNQSSA 831 Query: 647 IENKK-------LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 E + LV TG + R AQ V G + +S+KT +++ G GSKL Sbjct: 832 WEEPEQTLAGLTLVITGNIPGFTRESAQLAVEDRGGKATGSVSKKTSVVVAGTGAGSKLA 891 Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720 KA+ LG+ ++ E+F LL++ Sbjct: 892 KAEALGIPVIPAEEFPALLER 912 >gi|307700359|ref|ZP_07637399.1| DNA ligase (NAD+) [Mobiluncus mulieris FB024-16] gi|307614570|gb|EFN93799.1| DNA ligase (NAD+) [Mobiluncus mulieris FB024-16] Length = 917 Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 158/554 (28%), Positives = 268/554 (48%), Gaps = 88/554 (15%) Query: 1 MKKRQLIPIEALSIEQARKEL-SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 M+K++ IP + I+ +EL + +E + + D ++ + D++YDAL R + Sbjct: 1 MRKKREIPPQ---IQNEHQELVAQIEAARADYYDNPDEHGVTRLSDADYDALFVRLQLLE 57 Query: 60 HAFPDLARSEDPNG----------------------------PLNKIGGEMNLSLFKVTH 91 ++P L + P P N + TH Sbjct: 58 GSYPALVTPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENAVAVATTEGFPPHTH 117 Query: 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 + S++ +++ ++ + R+ + + K + E K+DG +++ Y G+ + Sbjct: 118 AKRMQSIDDVFSTAEVDAWWERVEKGLEGK---PFTVSAEVKVDGLAMSLTYVDGQLMTG 174 Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDE------ 204 A RGDG GEDV+A +R I T+P+ L IP ++E+RGEVY+ DF +N E Sbjct: 175 ATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMNAEREANNA 234 Query: 205 -------------MIAVGRKP-YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249 + + + P +ANPRNAA+G L++ + + R L F HGLG + Sbjct: 235 AWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAHGLGAV-QG 293 Query: 250 FAKG------QYEMLQKMRCLGFPV------NNGVRQAN--TFHGIVSYYNEMKSIRSTL 295 + G Q + +++ G P + G+R A T + + M R Sbjct: 294 WPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAMTEHRHDF 353 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 + IDG+V KVD + + LG AR+PRW ++KF ++ TRLL I++Q+GRTG +TP Sbjct: 354 SHQIDGVVLKVDNLAARALLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGRTGRVTPF 413 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A +E V + G+ ++ ATLHN + +V R +D+R GD V++++AG++IP+V+ Sbjct: 414 AVMERVLVDGSYVSRATLHN---------AKEVAR--KDVRPGDTVVLRKAGDIIPEVLG 462 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 +++ R + P CP C +R+ ++ K G + RC C AQ ERL H Sbjct: 463 PVLSLRPRGLPEWVMPEMCPSCGTRLGQE---KEGDI--DLRCPNQAGCPAQITERLIHV 517 Query: 476 VSRDAFNIEGLGKQ 489 +R A +IEGLG++ Sbjct: 518 GARGALDIEGLGEE 531 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/321 (22%), Positives = 116/321 (36%), Gaps = 90/321 (28%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--FGD 532 FV R+ G QQ+ FF+ P A F L + LG Sbjct: 607 FVWREVPGTAGRDWQQVRFFWAK--PKRVTAAEAATFGL----------VAGELGEPVAG 654 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY--------QNFAQ-- 582 +V ++ + R+ R + +L IRH+G AR++A+ + + ++ +Q Sbjct: 655 KTVETFFNQLAAARSKETWRVLVALSIRHLGPVAARAVARKFPTLAAVAAADVEDLSQVE 714 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDI----------------------------------- 607 + +IA + DW RVP +I Sbjct: 715 GVGTVIAASVVDWF---RVPWHQEIVLAWTQAGLGLGLRDFGVGLASASRGASPGVDSGG 771 Query: 608 -------------IAQAIVEFYQ---NPRNICAVEALLKEVSPSI-----GRHEKNVSSE 646 ++ VE Q P N +EA + P+ G +N S Sbjct: 772 IQPDLFSDFGTGHVSGGDVESGQAPHEPANPGGIEASWGQNFPAAKGSAPGMSAQNQSGA 831 Query: 647 IENKK-------LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 E + LV TG + R AQ V G + +S+KT +++ G GSKL Sbjct: 832 WEEPEQTLAGLTLVITGNIPGFTRESAQLAVEDRGGKATGSVSKKTSVVVAGTGSGSKLA 891 Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720 KA+ LG+ ++ E+F LL++ Sbjct: 892 KAEALGIPVIPAEEFPALLER 912 >gi|289759140|ref|ZP_06518518.1| LOW QUALITY PROTEIN: NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T85] gi|289714704|gb|EFD78716.1| LOW QUALITY PROTEIN: NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T85] Length = 449 Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 147/472 (31%), Positives = 236/472 (50%), Gaps = 36/472 (7%) Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKV 306 FA+ + +R G P N G+ + Y+ E R + ++IDG+V KV Sbjct: 3 FARHPASGIPGVRAWGLPGFRTHHPGNRPAGVRERIDYWGEH---RHEVDHEIDGVVVKV 59 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 DE +LQ++LG +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ Sbjct: 60 DEVALQRRLGFTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGS 119 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 + ATLHN IK R G + +GD V++++AG+VIP+V+ +V R + Sbjct: 120 TVGQATLHNASEIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSER 168 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P+ CP C S + + K G A RC C Q ER+ H SR+ +IE L Sbjct: 169 EFIMPTTCPECGSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVL 223 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + +++ I ++F L R T G + L +++K + Sbjct: 224 GYEAGVALLQAK----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAK 279 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L R + +L IRHVG AR+LA + S ++ I A + D L V VG Sbjct: 280 AAPLWRVLVALSIRHVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGP 329 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 IA A+ E++ + V+ + +++V + +V TG+L R A Sbjct: 330 TIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDA 389 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + G + +S+KT+ ++ GD+PGSK +KA +LGV I++E+ F LL Sbjct: 390 KEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 441 >gi|325989607|ref|YP_004249306.1| DNA ligase [Mycoplasma suis KI3806] gi|323574692|emb|CBZ40348.1| DNA ligase [Mycoplasma suis] Length = 590 Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 167/558 (29%), Positives = 275/558 (49%), Gaps = 55/558 (9%) Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD---DNSIFFTLEPKIDGTMITIRY 143 FK H P LSL +N E+L F I + ++ + N+ FF +EPKIDG I+++Y Sbjct: 61 FKKEHLEPMLSLNNAFNQEELCLFFDSIEKTLKQNNRPYKNNEFF-VEPKIDGMSISLQY 119 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEVYISKNDFLAL 201 +KG+ + A RGDG GED+ I I +IP+ + L + PE I VRGE++I K+DF + Sbjct: 120 KKGELIEALSRGDGIKGEDLFEPILRINSIPKKIKLPESFPEEILVRGEIFILKSDFKKI 179 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTSEIFAKGQYEM 257 +E K ++N RN +G LR + I+ + L+F + + K E K Q +M Sbjct: 180 QEESSEKRIKTFSNARNFVAGTLRLKDFEQISDKKLSFIAYRIIPVSKEQEFPVKTQEQM 239 Query: 258 LQKMRCLGFPVNNGVRQANTFHG-------IVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++ + LGF + T G + + + ++ + DGLV K++ Sbjct: 240 IRTLEELGF-TTPPKEYSKTIIGNRANLDIFLDFIGQFGEVKDEIDIPNDGLVIKLNSLE 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 + +G A+ P+W I++K+ T+LL I++++GR+G +T + +LEP+ + G+ I Sbjct: 299 DHEIIGSTAKFPKWAIAYKYPSLVKKTKLLKIELKVGRSGRITYIGKLEPIELKGSQIEC 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 +LHN D IK L D+R G V V ++GEVIP+ II E + + P+ Sbjct: 359 VSLHNFDNIKKL-----------DLREGSIVEVCKSGEVIPQ---IIFAESNSELPPYEL 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +V G+ C C Q++ ++ +F S+ A NIEGL + Sbjct: 405 PTECPSCSSTLV------FGEGDKLQYCRNK-DCWEQKISKIVYFCSQQAVNIEGLSRGI 457 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ K + F I DI++L+ ++Q + + L + L SI + + S Sbjct: 458 IE---KLVNKGFLTNI-LDIYSLKEKEQEIYSSKD--LKIKEKLFKKLVTSIEESKKASP 511 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++ + LGI H+G E A+ L K + S + N D S + VP VG Sbjct: 512 QKILIGLGIDHIGGEAAKLLLKKFSSLEELF----------NSDLESKLNVPKVGPKSGY 561 Query: 611 AIVEFYQNPRNICAVEAL 628 A+ + ++ N VE L Sbjct: 562 ALENWLKDEDNKKLVEGL 579 >gi|306818992|ref|ZP_07452709.1| NAD-dependent DNA ligase LigA [Mobiluncus mulieris ATCC 35239] gi|304648185|gb|EFM45493.1| NAD-dependent DNA ligase LigA [Mobiluncus mulieris ATCC 35239] Length = 917 Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 158/554 (28%), Positives = 268/554 (48%), Gaps = 88/554 (15%) Query: 1 MKKRQLIPIEALSIEQARKEL-SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 M+K++ IP + I+ +EL + +E + + D ++ + D++YDAL R + Sbjct: 1 MRKKREIPPQ---IQNEHQELVAQIEAARADYYDNPDEHGVTRLSDADYDALFVRLQLLE 57 Query: 60 HAFPDLARSEDPNG----------------------------PLNKIGGEMNLSLFKVTH 91 ++P L + P P N + TH Sbjct: 58 GSYPALVTPDSPTQTVGGGAGGGGGVKRAAAATTEAVGAAHVPENTVAVATTEGFPPHTH 117 Query: 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 + S++ +++ ++ + R+ + + K + E K+DG +++ Y G+ + Sbjct: 118 AKRMQSIDDVFSTAEVDAWWERVEKGLEGK---PFTVSAEVKVDGLAMSLTYVDGQLMTG 174 Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLALNDE------ 204 A RGDG GEDV+A +R I T+P+ L IP ++E+RGEVY+ DF +N E Sbjct: 175 ATRGDGRVGEDVTANVRTIKTVPQTLGGTVIPHLVEIRGEVYLPLEDFAQMNAEREANNA 234 Query: 205 -------------MIAVGRKP-YANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249 + + + P +ANPRNAA+G L++ + + R L F HGLG + Sbjct: 235 AWEAARAAGDKEKLKTLKKMPLFANPRNAATGSLKQKDSIEAAKRPLAFLAHGLGAV-QG 293 Query: 250 FAKG------QYEMLQKMRCLGFPV------NNGVRQAN--TFHGIVSYYNEMKSIRSTL 295 + G Q + +++ G P + G+R A T + + M R Sbjct: 294 WPDGVSPMATQEDFYRQLEVWGIPSVRRTPQSLGLRMAGLTTLTQVHAVLAAMTEHRHDF 353 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 + IDG+V KVD + + LG AR+PRW ++KF ++ TRLL I++Q+GRTG +TP Sbjct: 354 SHQIDGVVLKVDNLAARVLLGSTARAPRWACAYKFPPEEVHTRLLGIEVQVGRTGRVTPF 413 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A +E V + G+ ++ ATLHN + +V R +D+R GD V++++AG++IP+V+ Sbjct: 414 AVMERVLVDGSYVSRATLHN---------AKEVAR--KDVRPGDTVVLRKAGDIIPEVLG 462 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 +++ R + P CP C +R+ ++ K G + RC C AQ ERL H Sbjct: 463 PVLSLRPRGLPEWVMPEMCPSCGTRLGQE---KEGDI--DLRCPNQAGCPAQITERLIHV 517 Query: 476 VSRDAFNIEGLGKQ 489 +R A +IEGLG++ Sbjct: 518 GARGALDIEGLGEE 531 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/321 (22%), Positives = 116/321 (36%), Gaps = 90/321 (28%) Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG--FGD 532 FV R+ G QQ+ FF+ P A F L + LG Sbjct: 607 FVWREVPGTAGRDWQQVRFFWAK--PKRVTAAEAATFGL----------VAGELGEPVAG 654 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSY--------QNFAQ-- 582 +V ++ + R+ R + +L IRH+G AR++A+ + + ++ +Q Sbjct: 655 KTVETFFNQLAAARSKETWRVLVALSIRHLGPVAARAVARKFPTLAAVAAADVEDLSQVE 714 Query: 583 EINNIIAHNNDDWLSLIRVPLVGDI----------------------------------- 607 + +IA + DW RVP +I Sbjct: 715 GVGTVIAASVVDWF---RVPWHQEIVLAWTQAGLGLGSRDFGVGLASASRGASPGVDSGG 771 Query: 608 -------------IAQAIVEFYQ---NPRNICAVEALLKEVSPSI-----GRHEKNVSSE 646 ++ VE Q P N +EA + P+ G +N S Sbjct: 772 IQPDLFSDFGTGHVSGGGVESGQAPHEPANPGGIEASWGQNFPAAKGSAPGMSAQNQSGA 831 Query: 647 IENKK-------LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 E + LV TG + R AQ V G + +S+KT +++ G GSKL Sbjct: 832 WEEPEQTLAGLTLVITGIIPGFTRESAQLAVEDRGGKATGSVSKKTSVVVAGTGAGSKLA 891 Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720 KA+ LG+ ++ E+F LL++ Sbjct: 892 KAEALGIPVIPAEEFPALLER 912 >gi|323485875|ref|ZP_08091210.1| hypothetical protein HMPREF9474_02961 [Clostridium symbiosum WAL-14163] gi|323400863|gb|EGA93226.1| hypothetical protein HMPREF9474_02961 [Clostridium symbiosum WAL-14163] Length = 674 Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 192/718 (26%), Positives = 325/718 (45%), Gaps = 83/718 (11%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNK 77 L ++ + D YY + P + D YD L F +L E G P Sbjct: 12 LNDRLNRYRDEYYNRNAPSVSDEVYDRL----------FDELKELEQETGIQMANSPTQT 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G L K H IP LSL+K + DL F+ + + L K+DG Sbjct: 62 VGYPAVSRLEKTRHEIPLLSLDKTKSSMDLLNFMG----------EQQVMLML--KLDGL 109 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YE G+ + AA RGDG GE ++ RAI IP ++ E + V GE +I +D Sbjct: 110 TVKLTYENGELLEAATRGDGDEGEIITHNTRAISGIPSHITYK--ERLVVTGEGFIRPSD 167 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYE 256 F L + KPY N RN A+G +R ++ R L F G+ + + + + Sbjct: 168 FEELKTSLQDSSGKPYKNGRNLAAGSIRLMDAKICQERRLVFMPFGVLEGFPHLTR-KSD 226 Query: 257 MLQKMRCLGF-PVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 L+++R LGF P V +Q T + + +++ + IDG+V ++ + + Sbjct: 227 KLRELRALGFQPCKYLVTKQKLTLENVEAGIYQLRQYATDKDIPIDGIVVSFNDIAYAQS 286 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 G + +++KF + + L I+ GRTG + PVA PV I G ++ A+LH Sbjct: 287 CGRTGHHYKDGLAYKFEDDLHESLLQYIEWTPGRTGEIAPVAVFTPVEIDGCEVSRASLH 346 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF---- 430 N +I+ L+ + G+R+LV + +IP V E + D FS Sbjct: 347 NLSFIEDLE-----------LMAGNRILVSKRNMIIPHV------EENLDRGGFSMVDTI 389 Query: 431 PSFCPIC-QSRVVRDLNPK----TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP C Q + + + K +++ C C ++L++ HFVS+ A +IEG Sbjct: 390 PRVCPCCGQPTRIHESSGKGENGEDRIIKTLYCDNP-DCETRRLKKFVHFVSQKAMDIEG 448 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 L + L+ F F I DI+ L R + +I + GFG+ S L+D+I + Sbjct: 449 LSEAALEKFIGQ---GF-IHSYLDIYRLDRYR----AEIVRMDGFGEKSWQRLWDAIQQS 500 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAK-YYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RN + ER++ S+ I +G ++ L + ++ F + + D+ L P Sbjct: 501 RNTTFERYLISMDIPMIGNTASKVLGRVFHYDLDEFRDAV-----YGGYDFRQL---PDF 552 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSE--IENKKLVFTGTLQ 659 G+ + I +++ N C E L ++ P++ H ++ + K +V TG ++ Sbjct: 553 GETLHNNIHDWFCVEDNFCIWEELQTMMNIQKPAVVEHSEDREQDNPFVGKTIVVTGKVE 612 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 R + + LGA + +S+KTD ++ G+N GSKL KA+ LGV +++ +F + Sbjct: 613 PYTRDGINDLIESLGAHAGSSVSKKTDYLVCGENAGSKLSKARDLGVTVLSPAEFFSM 670 >gi|322379217|ref|ZP_08053608.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS1] gi|321148357|gb|EFX42866.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS1] Length = 680 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 140/425 (32%), Positives = 223/425 (52%), Gaps = 33/425 (7%) Query: 27 EISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSL 86 + +YH YY + P+I D+ YD L R+ +P ++ P P ++GG + +L Sbjct: 17 QYAYH---YYVLASPLISDAIYDQLYRQVLDYETKYP---QNILPYSPTQRVGGVVLETL 70 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIY----------RFWQKKDDNSIF-FTLEPKID 135 K TH + SLE ++N+E+L+ +I RI R Q S FT PK+D Sbjct: 71 PKHTHKVRMWSLENVFNLEELQVWINRIVESEHALKTKGRISQTYPSASFTRFTCSPKLD 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + YE G+ A++RG+G GE V+ + I +IP ++ P IE+RGEV + + Sbjct: 131 GASLNLYYENGQLQSASMRGNGLEGELVTHNAKTIHSIPLIIPYTKP--IEIRGEVVLQR 188 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQ 254 DF ALN E + +AN RNA G LR+L+ R L F+ GLG E + + Sbjct: 189 EDFKALNAERLKQNLPLFANARNATVGSLRQLDSKIAAQRKLTFYPWGLGLVEEKYTSLK 248 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 M Q ++ GF ++ + I + + RS + +D DG+V +D+ LQ Sbjct: 249 QSM-QMVKDWGF-LSLEFVLCESLEAIEETFKLFHTRRSEVTFDADGMVVMLDDLYLQSI 306 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +SPR+ ++KF + T+LLD+ Q+GR+G +TPVA LEP+ + GA I+ ATL Sbjct: 307 LGFTIKSPRFGFAYKFPATEKHTKLLDVLNQVGRSGAITPVALLEPIKLEGACISKATLD 366 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N I+ + + + D V++ R+G+VIPK++ + + R+ +P + P+ C Sbjct: 367 NYTQIQ-----------QQGLMINDTVVIVRSGDVIPKIIKPLKHLRNGTQKPITPPTHC 415 Query: 435 PICQS 439 P CQS Sbjct: 416 PACQS 420 >gi|288870885|ref|ZP_06115627.2| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479] gi|288865557|gb|EFC97855.1| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479] Length = 645 Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 201/703 (28%), Positives = 331/703 (47%), Gaps = 87/703 (12%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLF 87 YYQ S+ I+ + EYD L + +LA E G P +G E+ L Sbjct: 14 TYYQESREIMSNYEYDKL----------YDELAELEKETGVVLSKSPTQSVGYEVLSELP 63 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H P LSL+K + DL++++ D I L K+DG + + Y G Sbjct: 64 KERHESPMLSLDKTKSTADLQEWL---------GDQTGI---LSWKLDGLTVVLTYSGGT 111 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 A RG+G GE +++ R +P +S E++ +RGE I ++F +N+ + Sbjct: 112 LKKAVTRGNGEIGEVITSNARVFANVPVTISFQ-GELV-LRGEAVIRYSEFNRINEAIDD 169 Query: 208 VGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCL 264 V + Y NPRN SG +R+LN + IT R +NF L + F + E + ++ Sbjct: 170 VDAR-YKNPRNLCSGSVRQLN-SQITAERNVNFEAFALVTAEGVDFNNSRKEQFEWLKRQ 227 Query: 265 GFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDI--DGLVYKVDEFSLQKQLGERARS 321 GF V A+T V + E S YDI DGLV +D+ + + LG A+ Sbjct: 228 GFDVVEYRTVTADTLPEAVEAFAEAVS-----GYDIPSDGLVLLLDDIAYGESLGRTAKF 282 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PR I+ K+A++ T+L I+ RTG++ PVA +PV + G ++ A++HN ++ Sbjct: 283 PRNAIAFKWADEIRETKLQYIEWSPSRTGLINPVAVFDPVELEGTTVSRASVHNLSIMES 342 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 L A G+ GD + V +A +IP++ D + + P CP+C R Sbjct: 343 L-ALGE----------GDAITVYKANMIIPQIADNLTR-----SGKIQIPEKCPVCGGRT 386 Query: 442 -VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500 VR V + CT C A++++ FVSRDA NI+GL + L+ F Sbjct: 387 EVRQAGD-----VRSLYCTNP-DCQAKRIKSFSLFVSRDALNIDGLSEATLEKFI----G 436 Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560 A I+ ADIF L R ++T I + GFG S NL + + +L R ++ LGI Sbjct: 437 AGFIKEFADIFHLDRYEET----ITQMEGFGQKSYDNLIRATEAASHTTLARMVYGLGIS 492 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 +G A+ L + F + + + ++ L+ V +G ++A A + ++ + + Sbjct: 493 GIGLANAKMLCR------KFKFDFDRMRHATAEE---LVEVDGIGAVLADAWIRYFADEK 543 Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVSA 679 N V+ LL E++ E + E V TG+++ R++ +E + G + Sbjct: 544 NQETVDHLLSELTFEQ-EEESAEEAVFEGMTFVITGSVEHFANRNELKEAIEARGGKATG 602 Query: 680 ILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ KT +I D + SK +KA+ LGV I++EE+F+ +L + Sbjct: 603 SVTSKTTYLINNDVTSNSSKNKKAKDLGVPIISEEEFIKMLGE 645 >gi|325973164|ref|YP_004250228.1| DNA ligase [Mycoplasma suis str. Illinois] gi|323651766|gb|ADX97848.1| DNA ligase [Mycoplasma suis str. Illinois] Length = 590 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 167/558 (29%), Positives = 274/558 (49%), Gaps = 55/558 (9%) Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD---DNSIFFTLEPKIDGTMITIRY 143 FK H P LSL +N E+L F I + ++ + N+ FF +EPKIDG I+++Y Sbjct: 61 FKKEHLEPMLSLNNAFNQEELCLFFDSIEKTLKQNNRPYKNNEFF-VEPKIDGMSISLQY 119 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL--NIPEIIEVRGEVYISKNDFLAL 201 +KG+ + A RGDG GED+ I I +IP+ + L + PE I VRGE++I K+DF + Sbjct: 120 KKGELIEALSRGDGIKGEDLFEPILRINSIPKKIKLPESFPEEILVRGEIFILKSDFKKI 179 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGL---GKTSEIFAKGQYEM 257 +E K ++N RN +G LR + I+ + L+F + + K E K Q +M Sbjct: 180 QEESSEKRIKTFSNARNFVAGTLRLKDFEQISDKKLSFIAYRIIPVSKEQEFPVKTQEQM 239 Query: 258 LQKMRCLGFPVNNGVRQANTFHG-------IVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++ + LGF + T G + + + ++ + DGLV K++ Sbjct: 240 IRTLEELGF-TTPPKEYSKTIIGNRANLDIFLDFIGQFGEVKDEIDIPNDGLVIKLNSLE 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 + +G A+ P+W I++K+ T+LL I++++GR+G +T + +LEP+ + G+ I Sbjct: 299 DHEIIGSTAKFPKWAIAYKYPSLVKKTKLLKIELKVGRSGRITYIGKLEPIELKGSQIEC 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 +LHN D IK L D+R G V V ++GEVIP+ II E + + P+ Sbjct: 359 VSLHNFDNIKKL-----------DLREGSIVEVCKSGEVIPQ---IIFAESNSELPPYEL 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +V G C C Q++ ++ +F S+ A NIEGL + Sbjct: 405 PTECPSCSSTLV------FGGGDKLQYCRNK-DCWEQKISKIVYFCSQQAVNIEGLSRGI 457 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ K + F I DI++L+ ++Q + + L + L SI + + S Sbjct: 458 IE---KLVNKGFLTNI-LDIYSLKEKEQEIYSSKD--LKIKEKLFKKLVTSIEESKKASP 511 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++ + LGI H+G E A+ L K + S + N D S + VP VG Sbjct: 512 QKILIGLGIDHIGGEAAKLLLKKFSSLEELF----------NSDLESKLNVPKVGPKSGY 561 Query: 611 AIVEFYQNPRNICAVEAL 628 A+ + ++ N VE L Sbjct: 562 ALENWLKDEDNKKLVEGL 579 >gi|257439785|ref|ZP_05615540.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165] gi|257197805|gb|EEU96089.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165] Length = 449 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 141/465 (30%), Positives = 234/465 (50%), Gaps = 41/465 (8%) Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E L ++ LG PV+ + ++ ++ R+ L +D+DG V KV+ F+ ++ L Sbjct: 21 ESLDYLKSLGLPVSPRYHIVHDIEDAIAEIEQIGQNRAALDFDMDGAVIKVNNFAQRELL 80 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G + PRW I+ K+ + T L I++ +GRTG+LTP A +PV + G ++ ATLHN Sbjct: 81 GSTNKFPRWAIAFKYPPEVKETTLRSIEVGVGRTGVLTPTACFDPVFLAGTTVSRATLHN 140 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 ED+I+ L + +GD + V++AG++IP+V+ + +E PDAQP+ P FCP Sbjct: 141 EDFIRQL-----------GLCIGDTIQVRKAGDIIPEVIGVTRHE--PDAQPYQMPEFCP 187 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 C + V + AA RC C AQ L + HF SRDA +I+GLG Sbjct: 188 SCGAPAVHLEDE------AALRCVNP-ECPAQALRNIIHFASRDAMDIDGLGTMVATQLV 240 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 D + AD++ L Q + K F + S NL +I + +L++ +F Sbjct: 241 ---DKGL-VHSAADLYDLTIEQLLTLEK------FKEKSANNLLQAIEASKQNNLDKLMF 290 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 + GIR++G + A LA+++ S Q + I + G ++AQ++ EF Sbjct: 291 AFGIRNIGDKAAALLAEHFGSLQAIREATEEQIG----------EIDGFGGVMAQSVTEF 340 Query: 616 YQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + V L + ++ + ++ K LV TGTL+ + R +A+ + + G Sbjct: 341 FAKDGTTDLVHR-LADAGVNMQWKGEPKGDKLAGKTLVVTGTLETLSRSEAEALIVKNGG 399 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 S +S+KT ++ G GSKL KAQ LGV ++ E +FL ++ + Sbjct: 400 KASGSVSKKTAYVVAGAAAGSKLTKAQALGVPVLTEVEFLAMIAE 444 >gi|331086070|ref|ZP_08335153.1| DNA ligase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406993|gb|EGG86498.1| DNA ligase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 653 Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 204/713 (28%), Positives = 341/713 (47%), Gaps = 71/713 (9%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQ ++ + L Q ++ YYQ +K I+ + EYD R D + +L + N Sbjct: 1 MEQKKQRMQELVQLLNQAGKAYYQDAKEIMSNHEYD---RLYDELLVLEQELGITM-ANS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G E+ L K H P LSL+K + L++F+ +KK + K Sbjct: 57 PTVNVGYEVLSELPKERHEKPMLSLDKTKETDRLKEFVG------EKKA------VISWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + YE G+ A RG+G GE ++ + +P ++ E+I +RGE I Sbjct: 105 LDGLTIVLTYENGELKKAVTRGNGEVGEVITNNAKVFQNVPLRIAYR-GELI-LRGEAVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-F 250 DF +N+E+ V K Y NPRN SG +R+LN +IT R + F+ L K + F Sbjct: 163 GYRDFEKINEEIEDVDAK-YKNPRNLCSGSVRQLN-NEITARRNVQFYAFSLVKADGVDF 220 Query: 251 AKGQYEMLQKMRCLGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + L+ ++ GF V +T V ++ E + +P D GLV D+ Sbjct: 221 QNSRNIQLEWLKEQGFDVVEHYEVTKDTLEERVRFFAEHIE-ENDIPSD--GLVLTYDDI 277 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + + LG A+ PR + K+A++ T L +I+ RTG++ PVA +PV + G ++ Sbjct: 278 AYGQSLGSTAKFPRDSFAFKWADEIRETTLREIEWSPSRTGLINPVAIFDPVELEGTTVS 337 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 A++HN ++ L ++ +GD + V +A +IP++ + N P Sbjct: 338 RASVHNLSIMEEL-----------ELGIGDTIQVYKANMIIPQIAE---NLTRSGMDP-- 381 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P CP C T L CT C A+ ++ FVSRDA NI+GL + Sbjct: 382 VPECCPACGGETEIRQVSDTKTLY----CTNP-ECGAKHIKAFSLFVSRDALNIDGLSEA 436 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 L+ F F I +DIF L+R + +I ++ GFG+ S NL DSI K R + Sbjct: 437 TLEKFITR---GF-IHHFSDIFHLERHGE----EIRSMEGFGEKSYKNLQDSIEKARTTT 488 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L + I+ LGI ++G A+ + + F ++ ++ D +L + VGD+IA Sbjct: 489 LPKLIYGLGIANIGLSNAKMICRA------FDYDVEKMLQA---DVEALNEIQGVGDVIA 539 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQKI-QRHKAQ 667 +A V+++ + LL+EV I E +I V TG+++ R++ + Sbjct: 540 RAFVDYFAVEDHREEFFRLLEEV--KIPEEETTQEEQIFAGMNFVITGSVEHFANRNEVK 597 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 E + G V+ ++ KT+ +I D + SK +KA++LG+ I++E+ FL ++ Sbjct: 598 EVIESKGGKVTGSVTSKTNWLINNDVESTSSKNKKARELGIPIISEDTFLKMI 650 >gi|225389801|ref|ZP_03759525.1| hypothetical protein CLOSTASPAR_03549 [Clostridium asparagiforme DSM 15981] gi|225044136|gb|EEG54382.1| hypothetical protein CLOSTASPAR_03549 [Clostridium asparagiforme DSM 15981] Length = 673 Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 189/701 (26%), Positives = 315/701 (44%), Gaps = 76/701 (10%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS---EDPNGPLNKIGGEMNLSLFKVTH 91 YY + P I D+ YD L DL R + N P + +G L K H Sbjct: 23 YYNLNAPSISDAVYDRL-------FEELQDLERQTGIQMANSPTSTVGYPAISKLEKTNH 75 Query: 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 IP LSL+K NI ++ +F+ ++ + F L K+DG I + YE G+ + A Sbjct: 76 PIPLLSLDKEKNIVEVCRFM----------GEHQVMFML--KLDGLTIKLTYEGGELLEA 123 Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211 A RGDG GE V+ RAI IP + + + + GE +I +DF L ++ + Sbjct: 124 ATRGDGEVGEIVTHNTRAIGGIP--AHIRYEDRLVITGEAFIRPSDFEQLKASLVDNNGE 181 Query: 212 PYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP--- 267 Y N RN A+G +R L+ T + R L F + + E + + E L+++ LGF Sbjct: 182 TYKNGRNLAAGSVRLLDAKTCMERRLMFMPFTVLEGFENLPR-KSERLKELSALGFTPCK 240 Query: 268 ---VNNGVRQANTFHGI--VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 + QA GI + Y K I IDG+V ++ + K G Sbjct: 241 YLVTKRTLTQAEAEDGIKQLQQYARDKDI------PIDGIVVTYNDVAFAKSCGRTGHHY 294 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 + ++ KF + T+L I+ GRTG + PVA PV I G ++ A+LHN +I+ L Sbjct: 295 KDGLAFKFEDDLFETKLQMIEWTPGRTGEIAPVAVFAPVEIDGCEVSRASLHNLSFIEDL 354 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC--QSR 440 + + G+R+LV + +IP V D + +R ++P CP C +R Sbjct: 355 E-----------LMPGNRILVSKRNLIIPHVEDNL--DRGGFVLESAYPHRCPCCGEPTR 401 Query: 441 V--VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 + R N + C ++L++ HFV + A NIEGL + L+ Sbjct: 402 IHETRGRNENGEERTIKTLFCDNAGCETRKLKQFVHFVGKKAMNIEGLSEATLEKLIGRG 461 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 I DI+ L + + ++ + GFG+ S L+ +I + RN + ER++ ++ Sbjct: 462 ----WIHSYLDIYRLDQHKD----ELVRMDGFGERSWQRLWSAIQQSRNTTFERYVIAMD 513 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQN 618 I +G + L + + + N + + + A + ++P GD + I E++ Sbjct: 514 IPMIGNTASGVLCQVF--HGNLDEFRDAVYAGYD-----FRQLPDFGDTLHNNIHEWFSK 566 Query: 619 PRNICAVEAL---LKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 N C E L +K P E N + K +V TG ++ R + + LG Sbjct: 567 EENFCIWEELQMMMKIQKPVQPVAENNTQDNPFAGKTIVVTGKVEPYTRDEMNSLIASLG 626 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 A+ + ++RKT ++ G+ GSKL KA++LG+ ++ ++F Sbjct: 627 AIAGSSVTRKTHYLVCGEKAGSKLSKARELGIPVLEPQEFF 667 >gi|225572684|ref|ZP_03781439.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM 10507] gi|225039920|gb|EEG50166.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM 10507] Length = 622 Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 183/655 (27%), Positives = 320/655 (48%), Gaps = 68/655 (10%) Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++G + L K TH P LSL+K ++E+LR+FI D S+ L Sbjct: 26 NSPTVQVGYQALDELPKETHETPMLSLDKTKDMEELREFI---------GDHRSL---LS 73 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG I + YE+GK A RG+G GE ++ R IP L++ + +RGE Sbjct: 74 WKLDGLTIVLTYEEGKLSKAVTRGNGIVGEVITNNARVFQNIP--LTIPYKGKLVLRGEA 131 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL-NPTDITRYLNFFVHGLGKTSEI- 249 I+ +DF +N + + + Y NPRN SG +R+L N R + F L ++ Sbjct: 132 VITYSDFERINASIAQIEAR-YKNPRNLCSGSVRQLSNEITAKRNVQFLAFALVSAQDVD 190 Query: 250 FAKGQYEMLQKMRCLGFPV-NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 F + ++ ++ GF V + + V Y++E R+ P D GLV D+ Sbjct: 191 FRNSRDFQMRWLKSQGFDVVEYRIVTSENLEESVQYFSEAVE-RNDFPSD--GLVAIYDD 247 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + LG ++ PR + K+A++ T L +++ RTG++ PVA EPV + G + Sbjct: 248 IAYGDSLGSTSKFPRNSYAFKWADETKETVLKEMEWSPSRTGLINPVAIFEPVELEGTTV 307 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + A++HN +K L + +GD + V +A +IP++ + + + Sbjct: 308 SRASVHNISILKEL-----------QLGIGDHIQVYKANMIIPQIAENLTRSGN-----L 351 Query: 429 SFPSFCPIC--QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + P CP+C ++RV+++ V + C C A++++ FVSRDA N+EGL Sbjct: 352 TIPDACPVCGQEARVIKE------NEVESLYCMNP-QCQAKRIKAFTLFVSRDAMNVEGL 404 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 + L+ F I DIF L+R ++ +I + G G+ S NL SI K R Sbjct: 405 SEATLEKLIAR---GF-IHDFGDIFELERYRE----QITEMEGLGEKSFDNLVSSIEKAR 456 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +L + I+SLGI ++G A+ + ++ F ++ + + D+ + + +G Sbjct: 457 DTTLPKMIYSLGIPNIGLANAKVICRH------FDYDLERLKNASEDE---VSGIDGIGP 507 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHK 665 +IA+ +V F +N N +E L+ + + + + + +E V TG+++ R+ Sbjct: 508 VIAKNLVRFLENEENQKKLEHLVSHL--RLEKPAETLKKSLEGLNFVITGSVEHFPNRNA 565 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDN--PGSKLEKAQQLGVKIMNEEQFLFLL 718 +E + + G V+ ++ KT +I D SK +KA+ LGV I++EE+FL +L Sbjct: 566 VKEAIEEQGGKVTGTVTSKTSYLINNDTASSSSKNKKAKALGVPIISEEEFLEML 620 >gi|317502015|ref|ZP_07960199.1| DNA ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|316896695|gb|EFV18782.1| DNA ligase [Lachnospiraceae bacterium 8_1_57FAA] Length = 644 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 191/696 (27%), Positives = 328/696 (47%), Gaps = 74/696 (10%) Query: 34 CYYQYSKPIILDSEYDAL-KRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92 Y Q + I+ + EYD L LA S P +G E+ L K H Sbjct: 14 AYEQENTEIMSNFEYDRLYDELLSLEKELETTLASS-----PTVNVGYEVLSELPKERHE 68 Query: 93 IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152 P LSL+K ++E LR+F+ D ++ + K+DG I + YE G A Sbjct: 69 TPMLSLDKTKDVERLREFL---------GDQQAV---ISWKMDGLTIVLTYENGVLKKAV 116 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RG+G GE V+ + +P LS+ + +RGE IS DF +N+E I Sbjct: 117 TRGNGEIGEVVTNNAKVFRNVP--LSIPFKGELVLRGEAVISYKDFEKINEE-IGDADAK 173 Query: 213 YANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPV- 268 Y NPRN SG +R+LN ++T R + F+ L K + F + L+ ++ GF V Sbjct: 174 YKNPRNLCSGSVRQLN-NEVTAKRNVRFYAFTLVKADNVDFENSRAYQLKWLQEQGFDVV 232 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRST-LPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 + + +T V+++ E IR +P D GLV D+ S + LG A+ PR + Sbjct: 233 EHHLVTRDTVGDEVAWFAE--HIRENEVPSD--GLVLIYDDISYGQSLGTTAKFPRDSFA 288 Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387 K+ ++ T + +I+ RTG++ PVA +PV + G ++ A++HN ++ L Sbjct: 289 FKWEDEVRKTTIREIEWSPSRTGLINPVAIFDPVELEGTTVSRASVHNISIMEEL----- 343 Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447 ++ +GD V V +A +IP++ + + + P CP+C+ + Sbjct: 344 ------ELGIGDTVTVYKANMIIPQIAENLTR-----SGVSEIPKECPVCKKPTKISMEN 392 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 T L + C A+ ++ F SRDA NIEGL + L+ F + ++ Sbjct: 393 NTKTLYCMNS-----KCQAKHVKSFSLFASRDAMNIEGLSEATLEKFIING----YVKDF 443 Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 DIF L R + +I+ + GFG+ S NL I R +L R I+SLGI ++G A Sbjct: 444 TDIFHLDRYE----AEIKTMEGFGEKSYENLRKRIENARKTTLPRLIYSLGIPNIGISNA 499 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + + + ++ +I ++ L + VG +IA VE++++ ++ + Sbjct: 500 KMICRA------LGEDPKRVIRATEEE---LSAISGVGGVIAGTFVEYFKDTAHVDVFDR 550 Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK-IQRHKAQEYVTQLGAVVSAILSRKTD 686 LLKEV + E++ + V TG+++ + R + +E + + G V+ ++ KT+ Sbjct: 551 LLKEVELTKETSEED--QKFAGVNFVITGSVEHFVNRAQVKEEIEKRGGKVTGSVTSKTN 608 Query: 687 IIIVGDNPG--SKLEKAQQLGVKIMNEEQFLFLLQQ 720 +I D +K +KA++LG+ I++EE FL ++ + Sbjct: 609 YLINNDTGSGTAKNKKARELGIPIISEEDFLQMMNE 644 >gi|6573451|pdb|1B04|A Chain A, Structure Of The Adenylation Domain Of An Nad+ Dependent Ligase gi|6573452|pdb|1B04|B Chain B, Structure Of The Adenylation Domain Of An Nad+ Dependent Ligase Length = 318 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 181/324 (55%), Gaps = 11/324 (3%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +QA + + L + ++ + YY +P + D+EYD L + AI +P+L S+ P Sbjct: 4 QQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPT-- 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 +IGG + KV H +P +SL + DLR F R+ +++ + E I Sbjct: 62 -QRIGGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRV-----RQEVGEAAYVCELAI 115 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++RYE G FV A RGDG +GED++ ++ I ++P L L P +E RGE ++ Sbjct: 116 DGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLP--LRLKEPVSLEARGEAFMP 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKG 253 K FL LN+E A G + +ANPRNAA+G LR+L+P +R L+ FV+GL + Sbjct: 174 KASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGIAS 233 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L ++ LGF VN R+ ++++ +E R LPY+IDG+V KVD F+ Q+ Sbjct: 234 HSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQR 293 Query: 314 QLGERARSPRWMISHKFAEKQAST 337 LG A+SPRW I++KF ++ T Sbjct: 294 ALGATAKSPRWAIAYKFPAEEVVT 317 >gi|215447287|ref|ZP_03434039.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T85] Length = 416 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 140/437 (32%), Positives = 225/437 (51%), Gaps = 33/437 (7%) Query: 282 VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341 + Y+ E R + ++IDG+V KVDE +LQ++LG +R+PRW I++K+ ++A T+LLD Sbjct: 5 IDYWGEH---RHEVDHEIDGVVVKVDEVALQRRLGFTSRAPRWAIAYKYPPEEAQTKLLD 61 Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401 I + +GRTG +TP A + PV + G+ + ATLHN IK R G + +GD V Sbjct: 62 IRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIK---------RKG--VLIGDTV 110 Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461 ++++AG+VIP+V+ +V R + F P+ CP C S + + K G A RC Sbjct: 111 VIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPLAPE---KEGD--ADIRCPNA 165 Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C Q ER+ H SR+ +IE LG + +++ I ++F L R T Sbjct: 166 RGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAK----VIADEGELFALTERDLLRT 221 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 G + L +++K + L R + +L IRHVG AR+LA + S Sbjct: 222 DLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGS----- 276 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEK 641 ++ I A + D L V VG IA A+ E++ + V+ + ++ Sbjct: 277 --LDAIAAASTD---QLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDE 331 Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKA 701 +V + +V TG+L R A+E + G + +S+KT+ ++ GD+PGSK +KA Sbjct: 332 SVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKA 391 Query: 702 QQLGVKIMNEEQFLFLL 718 +LGV I++E+ F LL Sbjct: 392 VELGVPILDEDGFRRLL 408 >gi|328869954|gb|EGG18329.1| BRCT domain-containing protein [Dictyostelium fasciculatum] Length = 842 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 210/813 (25%), Positives = 364/813 (44%), Gaps = 163/813 (20%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-------PDLARS 68 Q ++ +L +I+ ++D YY S+ +I D EYD L ++ + + + DL+ S Sbjct: 70 QLVDDIKTLRNDINKYNDLYYNKSETVISDFEYDMLFKKLETLEQLYESQYSGSTDLSAS 129 Query: 69 -EDPNGPLNKIGGEM----NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 P+N++G + N KV H + LSL+ ++ EDL F +R+ K Sbjct: 130 GSGSTTPINQVGAPIATAGNERGEKVKHIVRMLSLDNTYSKEDLMAFESRVLGNLSKSSS 189 Query: 124 N--------SIFFTLEPKIDGTMITIRYEK-GKFVYAALRGDGHSGEDVSA-CIRAIPTI 173 ++ F+ E K DG ++I Y+ GK A RGDG GE ++ + IP++ Sbjct: 190 GISNNNNNNNLEFSCELKYDGIGLSIVYDSFGKLERIATRGDGDIGEIITTNALYYIPSL 249 Query: 174 PR------------VLSLNIPEIIEVRGEVYISK------NDFLALNDEMIAVGRKPYAN 215 P+ L+L + IEVRGEV K N + ++NDE+ Y N Sbjct: 250 PKQISTSHLVNNNNNLTLGQNDKIEVRGEVVFKKSQLEKLNTWRSMNDEV------EYKN 303 Query: 216 PRNAASGILRRL---------NPTDITRYLNFFVHGL-------------------GKTS 247 RN SG LR + NP I +F + L + Sbjct: 304 TRNIVSGKLRSILDPKQEELDNPFGIE--FDFISYQLFIHQNQNNQINNNQNNNNQNNNN 361 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGV--------RQANTFHGIVSYYNEMKSIRSTLPYDI 299 +L+K +GF ++ R ++ + ++ K R + +DI Sbjct: 362 TNTHNNNIILLEK---IGFNIDRNAILVGSLSQRDSSRLEEFIKMWSGEK--RESFDWDI 416 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V KV+ Q LG+ RSPRW +++KF + T + I +QIGR+G +TPVA +E Sbjct: 417 DGIVVKVNSLEKQAILGQANRSPRWAVAYKFGARSMPTVVKSIQLQIGRSGKVTPVAEVE 476 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV+I G ++ ATL+N +I+ L +R G RVLV+RAG+VIPK++ + + Sbjct: 477 PVDIHGVTVSRATLNNLLFIQKL-----------GVRTGSRVLVERAGDVIPKIIQSL-D 524 Query: 420 ERHPDAQPFSFPSF--CPI---------CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQ 468 + P + F CP C + L+ G + C C Q+ Sbjct: 525 AKEPMTKKELLDMFDRCPTSATDGDSLKCPCALGSPLSQPDG--YQDYYCFES-NCPNQR 581 Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 L+ + +VS+D N+ G+G Q+ + I+ D+++L ++ ++ + Sbjct: 582 LQSISWYVSKDGMNMTGIGPSQIKVLLEYG----LIQDIGDLYSLADKKD----QLLKLR 633 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 GF D V N+ +S+ K + +L +LGI VG + LA+ + + ++ A Sbjct: 634 GFSDKKVANMIESVEKSKKENLAHLFCALGIPGVGKASCKWLAERFTTIESLATA----- 688 Query: 589 AHNNDDWLSLIRVPLVGDI---IAQAIVEFYQ--NPRNICAVEALLKEV-------SPSI 636 SL + +VGD+ I+ I ++ + ++ +E LL + S S Sbjct: 689 --------SLQDIEVVGDLGPNISTNIYYYFHPTDQQSKDGIEKLLSIIQKHNVYDSQSQ 740 Query: 637 GRHE------KNVSSE-------IENKKLVFTGTLQKIQRHKAQEYVTQ-LGAVVSAILS 682 R++ KN S+ ++K +V TG + + R + Q+ V G ++ + + Sbjct: 741 NRNQNRSDEKKNSSTTTLQQSSIFKDKNVVVTGKFKNMTREEIQDIVQHNFGGIIQSQIR 800 Query: 683 RKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714 + T+ +++G + G SK+ KA+Q G I+ E +F Sbjct: 801 KNTNYLLMGQDAGSSKITKAEQNGTTIITENEF 833 >gi|218133029|ref|ZP_03461833.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC 43243] gi|217991902|gb|EEC57906.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC 43243] Length = 656 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/704 (27%), Positives = 335/704 (47%), Gaps = 89/704 (12%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLF 87 YY + I+ + EYDAL + +LA E G P +G E+ L Sbjct: 25 AYYAQGQEIMSNYEYDAL----------YDELAELEKKTGCVLASSPTVNVGYEVLSELP 74 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H P LSL K ++++L ++ QK L K+DG I + Y G+ Sbjct: 75 KERHEKPMLSLGKTKSVDELVSWLGS-----QKG-------LLSWKMDGLTIVLTYNNGE 122 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVRGEVYISKNDFLALNDE 204 A RG+G GE ++ + +P + IP E+I +RGE I +DF +N+ Sbjct: 123 MTKAVTRGNGEVGEVITGNAKVFANVP----VTIPYKGELI-LRGEAVIRYSDFEKINEL 177 Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKM 261 + G K Y NPRN SG +R+LN + IT R +NFF L K + F + E L+ + Sbjct: 178 IPEEGAK-YKNPRNLCSGSVRQLN-SRITKERNVNFFAFTLVKADGVDFKNSRREQLEWL 235 Query: 262 RCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 GF V A+ VS++ +I+ + DGLV D+ + LG A+ Sbjct: 236 ASQGFQTVEYKEVTADNLRSTVSWFE--NAIKDN-DFPSDGLVILYDDIAYGDSLGMTAK 292 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 PR ++ K+ ++ A T+LL+I+ RTG++ PVA EPV + G ++ A++HN ++ Sbjct: 293 FPRNSLAFKWTDETAQTKLLEIEWSASRTGLINPVAVFEPVELEGTSVSRASVHNISIME 352 Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440 L ++ VGD + V +A +IP++ + D P CP+C + Sbjct: 353 EL-----------ELGVGDTIEVYKANMIIPQIAKNLTRSGVKD-----IPQICPVCGMK 396 Query: 441 V-VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 +R LN + CT C A+ ++ HFV+RDA NI+GL + L+ F + Sbjct: 397 TEIRSLND-----AKSLYCTNP-DCQAKHVKSFVHFVARDAMNIDGLSEATLEKFIQHG- 449 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 + AD++ L + T I ++ G G S N+ +I++ R+ +L + I+SLGI Sbjct: 450 ---MLHEFADLYHLDDYRDT----IIDMDGLGVKSYDNMMAAIDRSRHTTLPKLIYSLGI 502 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 +VG A+ + K ++ I++ ++ L + VG++IA + V ++ + Sbjct: 503 ANVGLSNAKMIVKN-------TGTLDRILSATREE---LCAIDGVGEVIADSFVSYFADD 552 Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-QRHKAQEYVTQLGAVVS 678 ++ + L+ E+ ++ + + V TG+L R++ +E + +LG V+ Sbjct: 553 KHRQGLNRLVAELDIEAEEMASGENAVLADMVFVITGSLNHYSNRNELKELIEKLGGKVT 612 Query: 679 AILSRKTDIII--VGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ KT +I + SK + A +LGV ++ E++F+ ++++ Sbjct: 613 GSVTGKTSYLINNDSTSSSSKNKTAAKLGVPVITEDEFIKMIEE 656 >gi|149924280|ref|ZP_01912652.1| DNA ligase, NAD-dependent [Plesiocystis pacifica SIR-1] gi|149814860|gb|EDM74426.1| DNA ligase, NAD-dependent [Plesiocystis pacifica SIR-1] Length = 706 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 196/733 (26%), Positives = 323/733 (44%), Gaps = 119/733 (16%) Query: 35 YYQYSKPIILDSEYDALK---RRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK--- 88 Y+ P I D YD L RR D AH D P GP+ + ++ + Sbjct: 46 YWNLHAPTIPDPVYDRLVEGLRRLDP-AHPVLDELGEATPEGPVIEADATASIPPAERLG 104 Query: 89 --VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE-K 145 V H+ LSL+K + EDL W +K + + PK+DG ++RY+ + Sbjct: 105 APVRHTRAMLSLDKCYGPEDLYS--------WTEKFEGEVLVM--PKMDGVACSLRYDAE 154 Query: 146 GKFVYAALRGDGHSGEDVSACIRAIPTIPRVL------SLNIPE----IIEVRGEVYISK 195 GK AA RG+G GED++ + + +P+ L L P+ +EVRGE+++ Sbjct: 155 GKLFLAATRGNGSEGEDITVNVLEVEDVPQQLDPAAFAELPGPDGAAPAVEVRGELFMKL 214 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQ 254 + F ++ Y+NPRN +G ++ Y L+F+ + L T + Sbjct: 215 SVFERYKEQ--------YSNPRNLTAGAIKHKERGKTKAYTLSFYAYDLQGTE---LPTE 263 Query: 255 YEMLQKMRCLGFPVNN------GVRQANTFHGIVSYYNEMKSIRST--LPYDIDGLVYKV 306 E +R LGF V G QA Y + RS + Y+IDG+VY+ Sbjct: 264 REKFASLRALGFAVEECDFVPRGELQAA--------YERWSARRSADEIDYEIDGVVYRA 315 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 E + Q+++GE PRW +++KF +T L ++ + RTG +TPVA +P+ + GA Sbjct: 316 SEVAEQRRMGETGHHPRWSMAYKFQGDTGTTTLEEVLWSVSRTGTITPVAIFKPIELSGA 375 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +I A L N ++ L + G + V R G VIP V ++ + + Sbjct: 376 MIARAGLFNLNHFDEL-----------GLTAGAAIEVTRRGGVIPYVERVVTP--GAEGE 422 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F P CP C S VR + G+ + C+ C + +L L+HF +I+G Sbjct: 423 TFDIPKRCPACNSEAVRR-KKRDGEFL---YCSKPEGCGSARLGELQHFAK--VVDIQGF 476 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + ++ D + PAD +TL+ +E G S NL ++ R Sbjct: 477 GPKVVT---QAVDAGL-LSSPADFYTLR------VEDLEEFDRLGRRSAENLVAQVDAHR 526 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I L F+ SLGI H+G + A L A E + +L+ V + D Sbjct: 527 RIELPIFLQSLGIDHLGKQNAVLL----------ANEFRTLAGVRGVSREALLEVKGIKD 576 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN-----------VSSEIENKKLVFT 655 IA A++ + + ++ALL+ V+ + E++ + K +FT Sbjct: 577 AIADALLAGLETRAEL--IDALLEHVT-VVDLPERDPEAEAEAAAAAAEGALGGKTFLFT 633 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG---SKLEKAQQL-----GVK 707 G L+ R +AQE V G V ++ +S+ D ++VG G SK +KA++L +K Sbjct: 634 GALEAFTRKQAQEKVEANGGVPASGVSKSLDYLVVGAGKGAKSSKQKKAEKLIDGGAALK 693 Query: 708 IMNEEQFLFLLQQ 720 +++E FL ++ + Sbjct: 694 VISEGDFLAMIGE 706 >gi|153813883|ref|ZP_01966551.1| hypothetical protein RUMTOR_00089 [Ruminococcus torques ATCC 27756] gi|331088166|ref|ZP_08337086.1| DNA ligase [Lachnospiraceae bacterium 3_1_46FAA] gi|145848279|gb|EDK25197.1| hypothetical protein RUMTOR_00089 [Ruminococcus torques ATCC 27756] gi|330408822|gb|EGG88285.1| DNA ligase [Lachnospiraceae bacterium 3_1_46FAA] Length = 653 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 191/696 (27%), Positives = 328/696 (47%), Gaps = 74/696 (10%) Query: 34 CYYQYSKPIILDSEYDAL-KRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92 Y Q + I+ + EYD L LA S P +G E+ L K H Sbjct: 23 AYEQENTEIMSNFEYDRLYDELLSLEKELETTLASS-----PTVNVGYEVLSELPKERHE 77 Query: 93 IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152 P LSL+K ++E LR+F+ D ++ + K+DG I + YE G A Sbjct: 78 TPMLSLDKTKDVERLREFLG---------DQQAV---ISWKMDGLTIVLTYENGVLKKAV 125 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RG+G GE V+ + +P LS+ + +RGE IS DF +N+E I Sbjct: 126 TRGNGEIGEVVTNNAKVFRNVP--LSIPFKGELVLRGEAVISYKDFEKINEE-IGDADAK 182 Query: 213 YANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPV- 268 Y NPRN SG +R+LN ++T R + F+ L K + F + L+ ++ GF V Sbjct: 183 YKNPRNLCSGSVRQLN-NEVTAKRNVRFYAFTLVKADNVDFENSRAYQLKWLQEQGFDVV 241 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRST-LPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 + + +T V+++ E IR +P D GLV D+ S + LG A+ PR + Sbjct: 242 EHHLVTRDTVGDEVAWFAE--HIRENEVPSD--GLVLIYDDISYGQSLGTTAKFPRDSFA 297 Query: 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGK 387 K+ ++ T + +I+ RTG++ PVA +PV + G ++ A++HN ++ L Sbjct: 298 FKWEDEVRKTTIREIEWSPSRTGLINPVAIFDPVELEGTTVSRASVHNISIMEEL----- 352 Query: 388 VMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNP 447 ++ +GD V V +A +IP++ + + + P CP+C+ + Sbjct: 353 ------ELGIGDTVTVYKANMIIPQIAENLTR-----SGVSEIPKECPVCKKPTKISMEN 401 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 T L + C A+ ++ F SRDA NIEGL + L+ F + ++ Sbjct: 402 NTKTLYCMNP-----KCQAKHVKSFSLFASRDAMNIEGLSEATLEKFIING----YVKDF 452 Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIA 567 DIF L R + +I+ + GFG+ S NL I R +L R I+SLGI ++G A Sbjct: 453 TDIFHLDRYE----AEIKTMEGFGEKSYENLRKRIENARKTTLPRLIYSLGIPNIGISNA 508 Query: 568 RSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 + + + ++ +I ++ L + VG +IA VE++++ ++ + Sbjct: 509 KMICRA------LGEDPKRVIRATEEE---LSAISGVGGVIAGTFVEYFKDTAHVDVFDR 559 Query: 628 LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK-IQRHKAQEYVTQLGAVVSAILSRKTD 686 LLKEV + E++ + V TG+++ + R + +E + + G V+ ++ KT+ Sbjct: 560 LLKEVELTKETSEED--QKFAGVNFVITGSVEHFVNRAQVKEEIEKRGGKVTGSVTSKTN 617 Query: 687 IIIVGDNPG--SKLEKAQQLGVKIMNEEQFLFLLQQ 720 +I D +K +KA++LG+ I++EE FL ++ + Sbjct: 618 YLINNDTGSGTAKNKKARELGIPIISEEDFLQMMNE 653 >gi|301168580|emb|CBW28170.1| DNA ligase [Bacteriovorax marinus SJ] Length = 628 Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 180/704 (25%), Positives = 332/704 (47%), Gaps = 81/704 (11%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 + K + LE+EI +H YY+ + I D EYD L+ D R P+ P+ Sbjct: 2 SNKRIQELEKEIEHHKVLYYK-GQTEIPDHEYDKLE-----------DELRELSPDSPIL 49 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K+ G + + KV H LSL K + ++L ++ ++ S++ KIDG Sbjct: 50 KMVGSVVTAEDKVKHDEKMLSLAKTYKEDELATWM-------DGREAISMY-----KIDG 97 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 ++ YE G V A RGDG GE++++ I TIP ++ + IEVRGE+Y + Sbjct: 98 MSCSLIYENGNLVLAKTRGDGTFGENITSKALWIDTIPN--TIKEEKRIEVRGEIYCDEE 155 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYE 256 F +L+D+M+A+G + + RN +GI+ R + +++ L F L +I + + E Sbjct: 156 HFFSLSDDMVALGLEKPTSQRNIVAGIISRKDHLQLSKKLTFKAFEL--LGDISVQTEVE 213 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 ++ + GF + + +E K + Y IDG+V+ ++ ++LG Sbjct: 214 KVKYLEAQGFETLEYTLHKDA-KSLSKTIDEAKDFMAEGDYLIDGIVFSFNDQKWHRELG 272 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 E A PR+ ++ KF + T + +I Q+ R GILTPVA ++PV + GA I+ TLHN Sbjct: 273 ETAHHPRYKMAFKFQGESRETVIENILWQVSRNGILTPVANVKPVELSGAKISRVTLHNF 332 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 +K +++ GDR+ + R+GEVIPK ++++ + FS+P CP Sbjct: 333 GLVKQF-----------ELKQGDRIEIIRSGEVIPKFLEVV----ESSDEEFSYPKTCPS 377 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C + ++V C A E + +++ + I+ L ++L+ + Sbjct: 378 CDEEI---------EVVDIRLICRNSECPAIVKESILNYIQK--IGIDDLSSKRLEELIR 426 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 ++ ++I +D++ L + K++ L T L +I K + + L F+ + Sbjct: 427 AK---LVLKI-SDLYKLNMESLLTLDKVKEKLA------TKLLGAIEKSKTVDLVTFLSA 476 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGI GA K + + +++ ++ ++ L+ ++ +FY Sbjct: 477 LGISG-GA--YNKCEKVVFAGHDSLEKVKSLTPD---------KLILIDGFAKKSADDFY 524 Query: 617 QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAV 676 + + L+ V S K V +++ NKK+ TG+L + +R + + + Sbjct: 525 LSLSEKFPLIEELESVGFSFEEVIK-VETKVSNKKICITGSLSE-KRSVIESKIRDASGI 582 Query: 677 VSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLL 718 V + +S+ TDI++ D SKL+KA+ LG+ I+ EE+ + ++ Sbjct: 583 VVSSVSKNTDILVTNDQSSGSSKLKKAKDLGILIITEEELISMI 626 >gi|281414408|ref|ZP_06246150.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665] Length = 549 Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 157/550 (28%), Positives = 243/550 (44%), Gaps = 95/550 (17%) Query: 254 QYEMLQKMRCLGFPVNNGVRQAN-----TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 Q+E + G PV+ R+ +V+ E R L ++IDG+V K D Sbjct: 10 QHEAYDALASWGLPVSPYTRRVEGADEEALAAVVAVIEEYGRRRHELIHEIDGIVLKADA 69 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F+ Q+ LG +R PRW ++K+ ++ T L DI + +GRTG +TP A LEPV + G+ + Sbjct: 70 FADQRYLGHTSRVPRWAAAYKYPPEEVHTLLRDIAVSVGRTGRVTPFAVLEPVTVAGSTV 129 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP----- 423 + ATLHN+D +K + + +GD V+V++AG+VIP+VV ++ R Sbjct: 130 SLATLHNQDVVK-----------AKGVLIGDTVVVRKAGDVIPEVVGPVLPLREKAIEAG 178 Query: 424 -DAQPFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + + F P+ CP C + L P K G + RC +C AQ R++H SR AF Sbjct: 179 RELREFVMPAHCPSCGT----PLAPAKEGDV--DLRCPNARSCPAQLAGRVEHLASRGAF 232 Query: 482 NIEGLGKQQLDFFFK--SEDPA-----------FSIRIPADIFTLQR---------RQQT 519 ++E LG++ + + EDPA I A IF L R + Sbjct: 233 DVEALGEEAARWLVQGPGEDPAEHEGHVRPEGPGPITAEAQIFDLASGTPEAITGPRGED 292 Query: 520 STTKIENILGFGDV--------------------------------------SVTNLYDS 541 T ++ LG V + L+D Sbjct: 293 GLTDLQRSLGAVRVWREGRTKVDGRMVPSGVFTLKPYFFTAGTAKRPSAPTANTLRLFDE 352 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + K ++ L R + +L IRHVG ARSLA + S A D L + Sbjct: 353 LEKAKSQPLWRTLVALSIRHVGPTAARSLATAFGSMTALRA------AAEAGDRDRLAEI 406 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG IIA A++E++ + V+ +++ +E +V TG+L+ Sbjct: 407 DGVGPIIADALIEWFAEDWHREIVDRWTAAGVAMEDEQDESTPRTLEGLTVVVTGSLEGF 466 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R A+E + G S +S+KTD ++ G+ GSKL+KAQ LGV ++ EQ LL Sbjct: 467 SRDSAKEAILVRGGKASGSVSKKTDFLVAGEAAGSKLDKAQSLGVPVLEPEQVTALLAGG 526 Query: 722 NTTLRIHDDD 731 +R D D Sbjct: 527 PDAVRPADTD 536 >gi|153217073|ref|ZP_01950837.1| DNA ligase [Vibrio cholerae 1587] gi|124113903|gb|EAY32723.1| DNA ligase [Vibrio cholerae 1587] Length = 324 Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 122/359 (33%), Positives = 199/359 (55%), Gaps = 39/359 (10%) Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG ++NATLHN D I+ L + VGD V+++RAG+VIP++V +++ R Sbjct: 3 VGGVTVSNATLHNADEIERLG-----------VMVGDTVVIRRAGDVIPQIVSVVLERRP 51 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 +A+ FP+ CP+CQS D+ G+ VA RC+GGL C AQ+ E LKHFVSR A + Sbjct: 52 ENAKSIVFPTRCPVCQS----DVERVEGEAVA--RCSGGLICQAQRKEALKHFVSRKAMD 105 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 +EGLG + ++ E + PAD+F L+ + T ++ G S N+ D++ Sbjct: 106 VEGLGDKVIEQLVDRE----MVSTPADLFRLRAGELTILERM------GPKSAQNVIDAL 155 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 NK + +L +F+++LGIR VG A +LA+++LS + Q I VP Sbjct: 156 NKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVP 205 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VG ++A + F+ RN + LL++ P++ V S + K +V TG+ + Sbjct: 206 DVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQ 265 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R+ A+ + LGA V+ +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 266 LSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 324 >gi|168017901|ref|XP_001761485.1| predicted protein [Physcomitrella patens subsp. patens] gi|162687169|gb|EDQ73553.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1163 Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 121/353 (34%), Positives = 190/353 (53%), Gaps = 24/353 (6%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 Y+ P+I DS YDAL R + P A E K+G L + KV H++P Sbjct: 334 YHTLGNPLISDSAYDALVRELKDLESKLPAEASEESVTA---KVGAPPPLEIAKVRHAVP 390 Query: 95 TLSLEKIWNIEDLR----KFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 LSL ++ ++L+ + R+ R + ++ + +EPK+DG +T+ YE+GK V Sbjct: 391 MLSLAAVYKEDELKAWHERLQQRLNRMSNGEQPSTGAWVVEPKVDGIALTLLYERGKLVC 450 Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLS-----LNIPE-IIEVRGEVYISKNDFLALNDE 204 AA RGDG GEDV+ R + +P VLS +N+ E ++EVRGEVY++ DF LND Sbjct: 451 AATRGDGAEGEDVTHNARNLKGVPEVLSDHHKEINLQESVLEVRGEVYMTLLDFQELNDM 510 Query: 205 MIAVGRKPYANPRNAASGILRRLNPTD-ITRYLNFFVHGL----------GKTSEIFAKG 253 + G KP+ANPRNA +G +R L D R L+F + + +T + Sbjct: 511 KVKGGEKPFANPRNATAGSMRILKNRDGDDRRLSFMAYAILSPEDNVSAGVETPPRLVRA 570 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q++ L ++ L F VN+ R+ +F + Y + RSTL Y+ DG+V+K+++ + Q Sbjct: 571 QWDALNLLKQLDFSVNDDNRKFASFDDALHYATRWRDSRSTLKYESDGVVFKINDLATQA 630 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 +LG PRW ++ KFA + T L I++ IGR+G + P ARL+ + + + Sbjct: 631 KLGVVGSDPRWAVAWKFAATEVVTILEGIELSIGRSGAIIPNARLKDITVSSS 683 Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 81/345 (23%), Positives = 140/345 (40%), Gaps = 70/345 (20%) Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSR--VVRDLNPKTGKLVAAHRCTGGLACSAQQL 469 +VV ++ R + P CP C V +D N + C C + Sbjct: 830 QVVQVLRELRSDHMHSWVPPDRCPFCNGELTVSKDNNITS--------CCNN-KCPGRHS 880 Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 ++KHF ++ F +GLG L + A + PAD + L + + G Sbjct: 881 RKIKHF-AKTLF--KGLGPSILSDL----EEAGMVVDPADFYALD------VVSLSRLDG 927 Query: 530 FGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA 589 G+ S L +I + + +L I +LGI VG A+ L +++ S + ++A Sbjct: 928 LGEKSAAKLVKAIEESKGKALWELITALGIPSVGVTAAKLLEQWFGSMERL------LVA 981 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS-------PSIGRHE-- 640 + L+ VP +G + A AI ++ +P N+ V + +KE P I H Sbjct: 982 SREE----LLLVPGIGTVSASAIHDWCTDPFNVQLVSS-IKEAGFSPTFNDPEIENHAAG 1036 Query: 641 ---------------KNVSSE----------IENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 + SE ++ K +V TG ++ R + ++ V G Sbjct: 1037 NALSDSASQTTTSKVRTTDSEESKGNVETPRLQGKNVVVTGEFEEYSREQIEQLVVLNGG 1096 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + ++ KT I+ G +PG SK+ KA QL V +++ F LL+ Sbjct: 1097 QLRKSVNSKTSFIVAGQSPGPSKMTKAAQLAVPVLDISSFQQLLE 1141 >gi|56966058|pdb|1TAE|A Chain A, Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal gi|56966059|pdb|1TAE|B Chain B, Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal gi|56966060|pdb|1TAE|C Chain C, Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal gi|56966061|pdb|1TAE|D Chain D, Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal gi|212374930|pdb|3BA8|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+ Dependent Dna Ligase gi|212374931|pdb|3BA9|A Chain A, Structural Basis For Inhbition Of Nad-Dependent Ligase gi|212374932|pdb|3BAA|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+ Dependent Dna Ligase gi|212374933|pdb|3BAB|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+ Dependent Dna Ligase Length = 332 Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 185/331 (55%), Gaps = 10/331 (3%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 61 TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRL 339 F+LQ +LG ++PRW I++KF ++A T L Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAETVL 325 >gi|166788183|emb|CAP40308.1| NAD-dependent DNA ligase [Candidatus Phytoplasma solani] Length = 333 Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 188/340 (55%), Gaps = 12/340 (3%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 A K++ SL + ++ + YY S P I D +YDAL + + +P + P P Sbjct: 5 AIKKIKSLVKLLNEANYQYYNLSNPKINDQQYDALLKELIILETNYP---QHRLPYSPTL 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 KIGG + H+IP +SL+ +NIE+L+ F RI + + S E KIDG Sbjct: 62 KIGGFVEKKFKNFHHTIPMMSLDNAFNIEELKNFYDRIVKI-----NPSFSLLTELKIDG 116 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 I ++Y+KG A RG+G GED++ ++ I T+P L L+ P IEVRGE+Y+S Sbjct: 117 VAINLKYKKGILTQALTRGNGILGEDITKNVQTIKTVP--LKLSQPIDIEVRGEIYLSYP 174 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQY 255 F LN + + P+ANPRNAASG LR+LN + R L+ F++ + + + Q Sbjct: 175 AFEKLNQKQKENNKTPFANPRNAASGTLRQLNSKIVAQRNLSIFIYNIA-SPYLIKPTQL 233 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 L+ + LGF VN A TF ++ K I+ T PYD DG+V KV+E +L + Sbjct: 234 ASLEFLIQLGFTVNPHYNLALTFEDLLVKIQNYKVIKDTQPYDTDGVVIKVNELALHALI 293 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 G +++P+W I++KF K + + + DI Q+GRTG++TP+ Sbjct: 294 GATSKAPKWAIAYKFPAKTSQSIVTDIIFQLGRTGMITPI 333 >gi|56966057|pdb|1TA8|A Chain A, Structural Rearrangement Accompanying Nad+ Synthesis Within A Bacterial Dna Ligase Crystal Length = 332 Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 184/329 (55%), Gaps = 10/329 (3%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L++ A L ++++ + YY +P + D YD L + I FPDL Sbjct: 4 QPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI--- 60 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GG++ K H IP SL ++ ED+ F R+ +K + + Sbjct: 61 TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERV----RKAIGKPVAYC 116 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 E KIDG I++RYE G FV A RGDG GE+++ +R + ++P + L P +EVRG Sbjct: 117 CELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVP--MRLTEPISVEVRG 174 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE 248 E Y+ K F+ALN+E G+ +ANPRNAA+G LR+L+ + R LN F++ + Sbjct: 175 ECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGP 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + AK Q+E L+++ +GF N + + + +Y E RSTLPY+IDG+V KV+E Sbjct: 235 MKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNE 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQAST 337 F+LQ +LG ++PRW I++KF ++A T Sbjct: 295 FALQDELGFTVKAPRWAIAYKFPPEEAET 323 >gi|219882959|ref|YP_002478123.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6] gi|254778150|sp|B8HIQ9|DNLJ2_ARTCA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 2 gi|219861965|gb|ACL42306.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6] Length = 701 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 176/653 (26%), Positives = 298/653 (45%), Gaps = 80/653 (12%) Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H+ P SLEK ED + F K I EPKIDG I++RYE GK Sbjct: 103 VEHATPMKSLEKPG--EDA------VIEFAAKHPKAVI----EPKIDGLAISVRYENGKM 150 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 V AA RGDG++GEDV+ +R + +P + EVRGE+Y++ + N A Sbjct: 151 VRAARRGDGYTGEDVTDRVRGVDGLPEMAGDGD---YEVRGELYLNDENKAKANAIRQAA 207 Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 G+ P+AN RN +G+L + + + Y F T+ + +Q++ +GF Sbjct: 208 GKAPFANARNGVAGMLNKQDGS----YAGLFSFAAYSTTIDEKADHLDSMQQLEGMGFTT 263 Query: 269 NNGVRQANTFHG--IVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 + + ++ + + R L + +DG V KV+ + + +LGE +R+P+W + Sbjct: 264 ARSLLPQSVLDAEDPMAAIAALGAERKGLNFLMDGAVLKVNTAAERAELGEGSRAPKWAV 323 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 ++K+ + T + DI+ IG+TG L+ ARL PV + G+++ A+LHN +++ Sbjct: 324 AYKYPAVEEPTVIEDIEYNIGKTGRLSIRARLTPVEVDGSVVEYASLHNVGHLQAA---- 379 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 D+R+GD V +A ++IP+V + R +QP+ PS CP C Sbjct: 380 -------DMRIGDTVSAYKANDIIPQVHLPRADLRDESSQPWQPPSVCPQCSEPF----- 427 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA-FNIEGLGKQQLDFFFKSEDPAFSIR 505 K+ +L H CS R+ + SRDA +IEGLG D + + ++ Sbjct: 428 DKSTELWRCHTPE----CSVSG--RISYAASRDAGLDIEGLGGSIGDALIEKD----LVK 477 Query: 506 IPADIFTLQRRQQTSTTKIENILG----FGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 +D+F L Q E G G + + I K ++ L R I +L +R Sbjct: 478 DVSDLFYLGEDQLAEVELGETSTGGTRTLGQKNAAKIMAEIEKAKSQPLNRVITALSMRF 537 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 G R LA + + + + +A+ V +G A+ I ++ + Sbjct: 538 TGRTFGRRLAAEFGTMEALQAATVSQLAN----------VEGIGQKKAEVI---HEQLKK 584 Query: 622 ICAVEALLKEVSPSIGRHEKNVSSEIENKKL----------VFTGT-----LQKIQRHKA 666 V A L+E ++G + ++ + KL V TG+ L + R Sbjct: 585 NAPVIAKLREAGVNMGAPKAAPAAGAKAPKLTKPDGKPMNVVVTGSVKGSPLGSLSRSGV 644 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 QE + G S +S+ TD+++ G+ SK KAQ+LG++I+ ++F +++ Sbjct: 645 QELIEAKGGKASGSVSKTTDLLVCGEPGSSKFLKAQELGIRIVTPDEFAQMVE 697 >gi|218515813|ref|ZP_03512653.1| NAD-dependent DNA ligase LigA [Rhizobium etli 8C-3] Length = 216 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 98/212 (46%), Positives = 142/212 (66%), Gaps = 3/212 (1%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ FP+L R Sbjct: 8 VDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ +G +++ V H+ P LSL+ ++ ED++ F+ +YRF + D SI F Sbjct: 68 DSPS---RHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P ++E+R Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220 GEVY++K+DFLALN +M A G++ Y NPRN A Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTA 216 >gi|260588405|ref|ZP_05854318.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583] gi|260541279|gb|EEX21848.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583] Length = 644 Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 188/721 (26%), Positives = 325/721 (45%), Gaps = 101/721 (14%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------ 73 E+ ++ +++ + YYQ S+ I+ + +YD L + L E G Sbjct: 3 EMRAIIEQLKAANVAYYQESREIMSNYDYDKL----------YDKLVDMEKETGVIYSDS 52 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P + + L K H LSL+K ++E L+ +I+ D + I L K Sbjct: 53 PTQSVANDFLDFLPKEKHEKKMLSLDKTKSVETLKSWIS---------DKDGI---LSWK 100 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP--EIIEVRGEV 191 +DG + + Y+ G+ A RG+G +GE ++ + +P L IP E + +RGE Sbjct: 101 LDGLTVVLTYDNGELQKAVTRGNGTTGEIITQNVSRCKGVP----LKIPYKEKLILRGEA 156 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIF 250 IS DF +N ++ VG + Y NPRN ASG +R L+ ++ R + + L S+ Sbjct: 157 VISYTDFDRINSQIEDVGAR-YKNPRNLASGSIRLLDASESQKRNVQVIIFRLISGSKF- 214 Query: 251 AKGQYEMLQKMRCLGF------PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 K + + +GF PVN + V ++ + K + +P DGLV Sbjct: 215 -KTMDKQFNWLSEIGFNVVEHYPVN-----KDNIEECVKFF-KRKIENNDIP--TDGLVV 265 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + LG ++ R + K+ ++ A T L I+ RTG+L PVA EPV + Sbjct: 266 SYNNTDYGNSLGNTSKFERHSFAFKWKDEVAETTLKKIEWSPSRTGLLNPVAIFEPVELE 325 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ A++HN IK L + +GD + V ++ +IP++V E Sbjct: 326 GTTVSRASVHNISIIKEL-----------KLGIGDTIKVIKSNMIIPQIV-----ENSTK 369 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + P CPIC D N C C + + + HF RDA NIE Sbjct: 370 SNNLDIPKQCPICGG----DTNIICSNDTEVLMCM-NTHCPEKLIGKFVHFCERDAMNIE 424 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+ + +DF K ++ D + L + + T + I GFG SV L+ SI K Sbjct: 425 GMSEATVDFLVKKG----WLKTFKDFYNLSQYKATWMS----IPGFGKKSVEKLFLSIEK 476 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +S ER +++LGI +G +R + ++ ++ + + + + ++ Sbjct: 477 SKQVSPERLLYALGIPKIGRSQSREIFNHFDTWDDLIKSMK--------EKFDFSKLDGF 528 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTGTLQK 660 GD++ ++I ++++ +E L+K I E+ + +E + NK V TG+L K Sbjct: 529 GDVLNKSIYDWFKEDYKSEEIEQLVK-----ILVFEEKIKTEELLSLTNKTFVITGSLNK 583 Query: 661 I-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFL 717 R+ + + G V+ ++ KT +I D SK +KA++LG+ I++EE+FL L Sbjct: 584 FSNRNDLKSTIETHGGKVTGSVTSKTHYLINNDTTSNSSKNKKAKELGIPIISEEEFLTL 643 Query: 718 L 718 L Sbjct: 644 L 644 >gi|189490484|ref|YP_001957054.1| putative DNA ligase [Pseudomonas phage 201phi2-1] gi|164609549|gb|ABY63158.1| putative DNA ligase [Pseudomonas phage 201phi2-1] Length = 695 Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 170/610 (27%), Positives = 287/610 (47%), Gaps = 46/610 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R E L + I +++ YY II DS YD L + P+ + P Sbjct: 4 RHEYDVLCKRIRHYNYMYYVLDISIIPDSLYDQLLISLKLLEKEHPEWVTRDSPT---QT 60 Query: 78 IGGEMNLSLFKVTHSI-PTLSLEKIWNIEDLRKFITRIY-RFWQKKDDNSIFFTLEPKID 135 +G + S F++ + P LSL+ ++ ++ + I+ + K D S E K+D Sbjct: 61 VGHPVYESHFELVKRVKPMLSLDNLFTCDEAVDWSIDIHGDIYVGKKDESAEIVAEWKMD 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G + + Y A+ RGDG +GEDV+ + IPRVL + +RGEV + Sbjct: 121 GLSLDVNYTYDTMELASTRGDGTTGEDVTPNAMVVEGIPRVLKTPRHGGVSIRGEVVVRL 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR--YLNFFVHGLGKTSEIFAKG 253 D+ +N ++ A G+K +ANPRN A+G LR+ +P ITR L F + + +T Sbjct: 181 ADYNQINADLEAAGKKTFANPRNYAAGSLRQKDPR-ITRERKLVFVAYSVERTLGDPEAT 239 Query: 254 QYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYY----NEMKSIRSTLPYDIDGLVYKVDE 308 Y+ ++ GF + G R ++ G+ S + E ++ RS+ P+++DG+V+KV + Sbjct: 240 WYDDQAWLKENGFYTADTGKRLSHDQRGMTSGFPALIAECQAERSSYPFEVDGIVFKVVK 299 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + ++ LG +R PRW ++KF + TRL+ +D Q+GRTG LTP+AR+EP+++ G I Sbjct: 300 HTHRETLGYTSRFPRWGRAYKFPASKGETRLISVDRQVGRTGKLTPMARIEPIHVHGTTI 359 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +N T+HN +K L+ K+ G V + RAG+VIP + I + H + + Sbjct: 360 SNVTIHN---LKELEQH-KLFEGC-------YVEISRAGDVIPYLERRITD--HNGEKLY 406 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRC--TGGLACSAQQLERLKHFVSRDAFNIEGL 486 CP C ++VV KT + R C +Q+ L + R NI+GL Sbjct: 407 GEVEACPCCGTKVVVVHGKKTKENPEGSRTEYCPNTKCKDRQVAHLLYCTQRHVLNIKGL 466 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + + + + + P + L+ + E + ++VT Sbjct: 467 GDELVMDLYNA--GVVDVTRPLSLLMLKHEDFLKIGQSERMAEKLAMAVT------IASA 518 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 N+ L R I +LGI A LA+ + + + IA + ++ + +GD Sbjct: 519 NLDLTRVITALGISGAADGTAERLAREIRTLEEIS------IATID----RMLEIDDIGD 568 Query: 607 IIAQAIVEFY 616 + AQ+I EF+ Sbjct: 569 VTAQSIFEFF 578 >gi|148989161|ref|ZP_01820551.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae SP6-BS73] gi|147925384|gb|EDK76462.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae SP6-BS73] Length = 374 Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 120/347 (34%), Positives = 186/347 (53%), Gaps = 15/347 (4%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A+P+ ++ P +++GG++ K +H P Sbjct: 15 YYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPT---HRVGGKVLDGFEKYSHQYP 71 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + E KIDG I++ YEKG V R Sbjct: 72 LYSLQDAFSREELDAFDARV-----RKEVAHPTYICELKIDGLSISLTYEKGILVAGVTR 126 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPE--IIEVRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L +PE I VRGE Y+ + F +N G Sbjct: 127 GDGSIGENITENLKRVKDIP----LTLPEELDITVRGECYMPRASFDQVNQVRQENGEPE 182 Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 +ANPRNAA+G LR+L+ T + N + S Q + L+ + LGF VN Sbjct: 183 FANPRNAAAGTLRQLD-TAVVAKRNLATFLYQEASPSTRDSQEKGLKYLEQLGFVVNPKR 241 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF Sbjct: 242 ILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFPA 301 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 ++ +LL +D +GRTG++TP A L PV + G ++ ATLHN DYI Sbjct: 302 EEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYI 348 >gi|291549033|emb|CBL25295.1| DNA ligase, NAD-dependent [Ruminococcus torques L2-14] Length = 652 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 183/659 (27%), Positives = 315/659 (47%), Gaps = 75/659 (11%) Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P +G E+ L K H P LSL+K ++E L++F+ QK + Sbjct: 57 NSPTVNVGYEVLSELPKERHERPMLSLDKTKDVERLKEFLG-----GQKA-------LIS 104 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP---EIIEVR 188 K+DG + + Y+ G+ V A RG+G GE ++ + +P L IP E++ +R Sbjct: 105 WKLDGLTVVLTYQNGEIVKAVTRGNGVIGEVITNNAKVFKNVP----LKIPYQGELV-LR 159 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKT 246 GE IS DF +N+E+ V K Y NPRN SG +R+LN +IT R + F+ L + Sbjct: 160 GEAVISYKDFEKINEEIEDVDAK-YKNPRNLCSGSVRQLN-NEITAKRNVRFYAFTLVRA 217 Query: 247 SEI-FAKGQYEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + F + +Q + GF V N+ V + + + E++ + +P D GLV Sbjct: 218 EGVDFQNSRKYQMQWLENQGFDVVENHEVTRDTIEEEVAWFAREIE--HNEVPSD--GLV 273 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 D+ + + LG A+ PR + K+A++ +T+LL+I+ RTG++ PVA EPV + Sbjct: 274 LVYDDIAYGQSLGTTAKFPRDSFAFKWADEIRNTKLLEIEWSPSRTGLINPVAVFEPVEL 333 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++ A++HN ++ L ++ VGD + V +A +IP++ + + Sbjct: 334 EGTTVSRASVHNISIMEEL-----------ELGVGDEIQVYKANMIIPQIAENLTRSGVK 382 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D P CP+C + +T L CT C A+ ++ FVSRDA NI Sbjct: 383 D-----IPKVCPVCGGETKISMENETKTLY----CTNP-KCQAKHVKSFALFVSRDAMNI 432 Query: 484 EGLGKQQLD-FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 EGL + L+ F F F+ D+F L + +I + GFG+ S L SI Sbjct: 433 EGLSEATLEKFIFHGYVKDFT-----DLFHLDNYRD----EIMTMDGFGEKSFLKLQSSI 483 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 K R +L R ++ LGI +G+ A+ + + + N +Q + + L+ + Sbjct: 484 EKARKTTLARLVYGLGIPGIGSANAKVICR---ALGNDSQRVLQA------EEAELVEIQ 534 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI- 661 VG ++A++ V++++ + + L + S + V TG+++ Sbjct: 535 GVGAVMAKSYVDYFKEEEH-QEIYKRLLDEVELEEEEVTEDSQKFAGVNFVITGSVEHFA 593 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + + + G V+ ++ KT+ +I D + SK +KA+ LGV I++E+ FL +L Sbjct: 594 NRAEVKAEIEKRGGKVTGSVTSKTNYLINNDVNSTSSKNKKARDLGVPIISEKDFLEML 652 >gi|302385528|ref|YP_003821350.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1] gi|302196156|gb|ADL03727.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1] Length = 672 Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 189/716 (26%), Positives = 314/716 (43%), Gaps = 85/716 (11%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L + ++ + + YY ++ P + D YD L + + N P +G + Sbjct: 12 LTERLNIYREQYYDHNAPSVSDEIYDRLFDKLKELEQQ----TGIHMANSPTQTVGYPVM 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 L K H IP LSLEK + EDL F + + + L K+DG + + Y Sbjct: 68 SKLEKTIHEIPLLSLEKTKSSEDLELF----------QGKHQVMLML--KLDGLTVKLTY 115 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVYISKNDFLAL 201 E G+ V A RGDG GE ++ R I IP + IP + V GE +I DF L Sbjct: 116 ENGRLVEVATRGDGDEGEIITHNTRGITGIP----VQIPYSGRLVVTGEAFIRPVDFEIL 171 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHG-LGKTSEIFAKGQYEMLQ 259 +++ +PY N RN A+G +R L+ R + F G L ++ K Q L Sbjct: 172 KIKLLDSTGRPYKNGRNLAAGSVRLLDAVACRDRKVVFMPFGVLEGYPDMTTKSQ--KLS 229 Query: 260 KMRCLGFPVNNGV--RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 ++ LGF + + ++ T I +++ IDG+V ++ + K G Sbjct: 230 QLPALGFSICKFLVSKRPLTLAEIEQAIQQLQQFAKANGIPIDGIVMSYNDIAFSKSCGR 289 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 + ++ KF ++ +RLL I+ R+G + PVA + V I G ++ A+LHN Sbjct: 290 TGHHYKDGMAFKFEDELYESRLLHIEWNTTRSGEIAPVAVFDTVEIDGCEVSRASLHNLT 349 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 +I+ L ++ G+R+LV + +IP + D + +R P CP C Sbjct: 350 FIESL-----------ELMPGNRILVSKRNMIIPHIEDNL--DRGGFLLGSVIPHECPCC 396 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGL-----ACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 + R + + R T L C ++L R HFVS+ A +I GL + L+ Sbjct: 397 -GQSTRIHVGEERSVEGEVRTTKTLFCDNPDCETRRLRRFVHFVSQKAMDIAGLSEATLE 455 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 I DI+ L R + +I + GFG+ S NL+D+I + RN + ER Sbjct: 456 KLIGRG----WIHTYMDIYRLDRHR----GEIVRMDGFGEKSWQNLWDAIQQSRNTTFER 507 Query: 553 FIFSLGIRHVGAEIARSLAKYY---LS------YQ--NFAQ--EINNIIAHNNDDWLSLI 599 ++ ++ I +G +++L K + LS YQ +F Q + + +N DW SL Sbjct: 508 YVIAMDIPMIGNSASKALRKEFNGSLSDFEMAVYQGYDFTQLPDFGETLHNNIRDWFSL- 566 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + I + + + +C +E L E PS + S +V TG ++ Sbjct: 567 ---------EENIYSWDELQKLLC-IEKKLAETVPS------DEDSAFVGCTIVVTGKVE 610 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 R + + LGA +S KTD ++ G+ G KL KA++LG+ ++ +F Sbjct: 611 PYTREGINDLIESLGAHPGNSVSSKTDYLVCGEKAGGKLMKARELGIPVLTPAEFF 666 >gi|281424041|ref|ZP_06254954.1| putative DNA ligase [Prevotella oris F0302] gi|281401824|gb|EFB32655.1| putative DNA ligase [Prevotella oris F0302] Length = 665 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 192/715 (26%), Positives = 319/715 (44%), Gaps = 102/715 (14%) Query: 33 DCYYQYSKPIILDSEYDAL----KRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 D YY ++ D E+DA+ K+ FPD P N++ E N++ K Sbjct: 21 DAYYNGQGELMTDYEWDAMFDQVKQLETETGQKFPD--------SPTNRVS-EDNITGQK 71 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 H P LSL K +L K+ I+ W K+DG + + ++ G Sbjct: 72 EEHEFPALSLAKTKQPTELAKWAEGRPIWLSW--------------KLDGLTLVVTFDNG 117 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 K RG+GH G +++ AI IP+ + + VRGE IS DF N E Sbjct: 118 KLTKVVTRGNGHIGTNITHLANAIQGIPQ--EIKSKGHVVVRGECVISYADFEQFNIE-- 173 Query: 207 AVGRKPYANPRNAASGILRRLNPTDI-TRYLNFF----------VHGLGKTSEIFAKGQY 255 + YANPRN ASG L + ++ R+LN+ ++ G + + Sbjct: 174 --SDEEYANPRNLASGSLTLKDVNEVRQRHLNWIPFTLVYAEEPINSWGARMDWLEQNGM 231 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + +++ + + P + Q +++ + E K PY +DGLV D+ S Q Sbjct: 232 KAVEREK-IEVPTLQNIEQ------VIAKWTE-KVTGKVNPYPVDGLVITYDDTSF-AQT 282 Query: 316 GERA--RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 G + R + K+ ++ A T L I+ I +PVA PV + G + A+L Sbjct: 283 GSVTGHHATRAGYAFKWQDESADTVLDHIEWSCAANTI-SPVAVFTPVELEGTTVKRASL 341 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 N + L G+ G ++ V +A ++IPKV I VNE+ D P Sbjct: 342 CNISECERLGIGGQ----------GTKLSVIKANKIIPKV--IRVNEKIGD---LKIPET 386 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S+ + T CT G C A+QL + FVS++ NI+G+ +Q + Sbjct: 387 CPVCGSKT--QITMSTASETKTLHCTNG-KCPAKQLRKFARFVSKEGVNIDGMSEQTVAK 443 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F ++ AD++ L+ ++ + GFG+ SV NL +I K R++ F Sbjct: 444 FIN----LGWVKEYADLYQLKNH----ALELSFMEGFGEKSVRNLLHAIEKARDVEAHHF 495 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-----VGDII 608 +++L I G ++ + L Y + EI +I + +D + + P +G Sbjct: 496 LYALSIPLCGQDVCKRLLSAYPLH-----EIIDIASGKSDKTVPGVEAPFSLIAGIGPEK 550 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF--TGTLQKIQ-RHK 665 + IV+++ + N VE LL++V S E N +S K L F TG + + R++ Sbjct: 551 SNQIVKWFHDEENRMMVEKLLRQVHIS---QENNEASGENCKGLTFVVTGDVNHYKNRNE 607 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 + Y+ G V+ +S+ T+ +I D + SK +KAQQLG+ I++EE+F+ L Sbjct: 608 LKAYIESQGGKVTGSVSKSTNYLINNDVTSASSKNQKAQQLGIPIISEEEFINLF 662 >gi|299142918|ref|ZP_07036045.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella oris C735] gi|298575647|gb|EFI47526.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella oris C735] Length = 657 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 190/714 (26%), Positives = 317/714 (44%), Gaps = 100/714 (14%) Query: 33 DCYYQYSKPIILDSEYDAL----KRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 D YY ++ D E+DA+ K+ FPD P N++ E N++ K Sbjct: 13 DAYYNGQGELMTDYEWDAMFDQVKQLETETGQKFPD--------SPTNRVS-EDNITGQK 63 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 H P LSL K +L K+ I+ W K+DG + + ++ G Sbjct: 64 EEHEFPALSLAKTKQPTELAKWAEGRPIWLSW--------------KLDGLTLVVTFDNG 109 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMI 206 K RG+GH G +++ AI IP+ + + VRGE IS DF N E Sbjct: 110 KLTKVVTRGNGHIGTNITHLANAIQGIPQ--EIKSKGHVVVRGECVISYADFEQFNIE-- 165 Query: 207 AVGRKPYANPRNAASGILRRLNPTDI-TRYLNFF----------VHGLGKTSEIFAKGQY 255 + YANPRN ASG L + ++ R+LN+ ++ G + + Sbjct: 166 --SDEEYANPRNLASGSLTLKDVNEVRQRHLNWIPFTLVYAEEPINSWGARMDWLEQNGM 223 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 + +++ + + P + Q +++ + E K PY +DGLV D+ + Q Sbjct: 224 KAVEREK-IEVPTLQNIEQ------VIAKWTE-KVTGKVNPYPVDGLVITYDDTTF-AQT 274 Query: 316 GERA--RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 G + R + K+ ++ A T L I+ I +PVA PV + G + A+L Sbjct: 275 GSVTGHHATRAGYAFKWQDESADTVLDHIEWSCAANTI-SPVAVFTPVELEGTTVKRASL 333 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 N + L G+ G ++ V +A ++IPKV I VNE+ D P Sbjct: 334 CNISECERLGIGGQ----------GTKLSVIKANKIIPKV--IRVNEKIGD---LKIPEA 378 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S+ + T CT G C A+QL + FVS++ NI+G+ +Q + Sbjct: 379 CPVCGSKT--QITMSTASETKTLHCTNG-KCPAKQLRKFARFVSKEGVNIDGMSEQTVAK 435 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F ++ AD++ L+ ++ + GFG SV NL +I K R++ F Sbjct: 436 FIN----LGWVKEYADLYQLKNH----ALELSFMEGFGKKSVRNLLHAIEKARDVEAHHF 487 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL-----VGDII 608 +++L I G ++ + L Y Y EI +I + +D + + P +G Sbjct: 488 LYALSIPLCGQDVCKRLLSAYPLY-----EIIDIASGKSDKTVPGVEAPFSLIAGIGPEK 542 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQ-RHKA 666 + IV+++ + N VE LL++V I + K S E + V TG + + R++ Sbjct: 543 SNQIVKWFHDEENRMMVEKLLRQV--HISQENKEASGENCKGLTFVVTGDVNHYKNRNEL 600 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 + Y+ G V+ +S+ T+ +I D + SK +KAQQLG+ I++EE+F+ L Sbjct: 601 KAYIESQGGKVTGSVSKSTNYLINNDVTSASSKNQKAQQLGIPIISEEEFINLF 654 >gi|261880335|ref|ZP_06006762.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270333026|gb|EFA43812.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 665 Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 194/727 (26%), Positives = 326/727 (44%), Gaps = 101/727 (13%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + + L ++++ D YY ++ D E+DAL + I P+ P N++ Sbjct: 5 QRMQELVEQLNRASDAYYNGRDELMSDYEWDALFDKLKLIEQETGKTL----PDSPTNRV 60 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEPKIDG 136 E N++ K H TLSL K ++DL K+ T I+ W K+DG Sbjct: 61 S-EDNITGQKEEHEFATLSLAKTKLVDDLVKWATGRPIWLSW--------------KLDG 105 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + + Y+ GK RG+GH G +++ +AI IP+ + N ++ +RGE IS Sbjct: 106 LTLVVTYDNGKLTKVVTRGNGHIGTNITHLAKAIAGIPQKIK-NKGHVV-IRGEAIISYE 163 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT----RYLNF-FVHGLGKTSEIFA 251 DF N E A YANPRN ASG L +P +++ R++ F VH S + Sbjct: 164 DFEQFNMENDA----EYANPRNLASGSLTLKDPNEVSQRNIRWIPFTLVHSDEDISSWGS 219 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL---PYDIDGLVYKVDE 308 + + M+C V++ + T I ++ ++R T PY +DGLV D+ Sbjct: 220 RMDFLRENGMQC----VDHECIEQPTLENIQKAIDQW-TLRVTNRENPYPVDGLVIVYDD 274 Query: 309 F---SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 S G A R + K+ ++ A T L +I+ + I +PVA PV + G Sbjct: 275 TAYASTGSVTGHHAT--RAGYAFKWQDESADTELEEIEWSCAASTI-SPVAVFRPVELEG 331 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + A+L N + L GK G ++ V +A ++IPKV+ + + Sbjct: 332 TTVKRASLCNISECERLGIGGK----------GTKLAVIKANKIIPKVIKV-----YEKV 376 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P CP+C+S ++P +G CT C A++L++ + F+S+D +++G Sbjct: 377 GELETPHECPVCKSPTEIIVSPSSGTRTL--HCTNE-TCPAKELKKFRRFLSKDGMDVDG 433 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 + +Q + F + ADI+ L +I + GFG+ S N+ SI K Sbjct: 434 ISEQTISKFIN----LGWVAEYADIYHLPAH----AGQIARLEGFGEKSAANMVSSIEKS 485 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND---------DWL 596 R + RF+++L I VG + L LS IN + D L Sbjct: 486 RKVEARRFLYALSIPLVGKDACNRL----LSTYALTDLINMVTGRGKSTDLFTPAPGDLL 541 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK----- 651 ++I P +G + ++V ++ + RN V+ LL+EV + VS E KK Sbjct: 542 AMI--PGIGPETSASLVNWFSDVRNQTIVDRLLQEVVI------EQVSIEPTGKKCESLT 593 Query: 652 LVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKI 708 V TG + + R++ + Y+ G V+ +S+ T +I D + K +KAQQL + I Sbjct: 594 FVVTGDVHHYKNRNELKAYIESQGGKVTGSVSKSTSFLINNDVTSTSGKNQKAQQLHIPI 653 Query: 709 MNEEQFL 715 ++E++F+ Sbjct: 654 ISEDEFI 660 >gi|111226523|ref|XP_001134548.1| BRCT domain-containing protein [Dictyostelium discoideum AX4] gi|90970627|gb|EAS66865.1| BRCT domain-containing protein [Dictyostelium discoideum AX4] Length = 843 Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 200/804 (24%), Positives = 362/804 (45%), Gaps = 148/804 (18%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +I+ ++D YY SK I D EYD L +R + + F + P++ Sbjct: 71 LRNKINRYNDLYYNKSKSEISDFEYDKLFKRLEILEKKFNQQTITNQVGAPISDYSNNRG 130 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-------IFFTLEPKIDG 136 L K H LSL+ ++ +D+ F +I +F KK + I ++LE K DG Sbjct: 131 L---KFRHKSRMLSLQNTYSKDDIIAFKNKIEKFLLKKQTSQQQQPQQQIEYSLELKYDG 187 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSA-CIRAIPTIPRVLSL--NIPEII-------- 185 I++ YE K RG+G GED++ ++ IP++ +L+L N+ I Sbjct: 188 IGISLVYENNKLKRVLTRGNGEIGEDITTNALQFIPSLKNLLTLPSNLTVFILFLILKYK 247 Query: 186 --EVRGEVYISKNDFLALND-EMIAVGRKPYANPRNAASGILRRLNPTDITRYLN----- 237 E+RGEV ++K+ +N ++ + Y N RN SGILR+ D LN Sbjct: 248 DFEIRGEVVLNKSYLKIINKLKLDNNDQHQYKNTRNIVSGILRKSIEEDANDSLNIEPIL 307 Query: 238 ---------FFVHGLGKTSEIF----------------------------AKGQYEMLQK 260 FF + T+ Q + L+ Sbjct: 308 LLNEQMKFDFFPYFFIPTNNNNNNINNGENENENDNEKENDNEMIIDDERCNTQSKNLKL 367 Query: 261 MRCLGFPVNNGVRQANTFH-GIVSYYNEMKSI-----------RSTLPYDIDGLVYKVDE 308 +GF ++NG T G N++K+I R +DIDG+V KV++ Sbjct: 368 FEKMGFQIDNGSNTVVTLSTGGGGNNNDIKNIEEFIKEWELKKRENHNWDIDGIVIKVND 427 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++Q+ LG+ RSPRW ++KF K + + DI +Q+G++G +TPVA +EP+ + G I Sbjct: 428 INIQRILGDINRSPRWAFAYKFGAKSEISTIKDIVLQVGKSGRITPVALVEPIQVHGVTI 487 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 + ATL+N YI L +I++G +VL++RAG+VIPK++ + + + Sbjct: 488 SRATLNNLSYINKL-----------NIKIGSKVLIERAGDVIPKIITNLDDNINNTNTNT 536 Query: 429 SFPSF--------CP-----ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 + + C +C + +L + G + C C Q ++++ F Sbjct: 537 NTNNTNNIESLFKCNENGNILCPCNLKSELVNRVG--YVDYFCVAE-NCPNQLVQQISWF 593 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 V + A NI+G+GK Q+ +++ I D++ L + ++ K+ ++ GF V Sbjct: 594 VDKKAMNIQGVGKSQIQVLLENQ----LIEDFGDLYELYQFKE----KLLSLKGFSHTKV 645 Query: 536 TNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 NL +SI ++ L + ++GI +G+ ++ L++ + Q ++N+I N+ Sbjct: 646 NNLLESIEDSKSRGLASLLCAIGIPGIGSSNSKILSEKF-------QSLDNLI--NSPSI 696 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL----LKEVSPSIG-------------- 637 S+ +G +++I F+ NP + + L K S ++ Sbjct: 697 ESIELQSGLGRQTSESIFNFF-NPLDQFEKQYLDYLIFKFKSNNLKLTHNNNNDNNEEIG 755 Query: 638 -----RHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT-QLGAVVSAILSRKTDIIIVG 691 + +N +S + NK +V TG + R ++++ + A V + ++ T I+++G Sbjct: 756 NNNNNNNNENNNSFLSNKYIVITGKFKLGDRDFVKDFIQRKFNAKVQSSINSFTQILLIG 815 Query: 692 DNPG-SKLEKAQQLGVKIMNEEQF 714 + P +KL KA +LG++I +E + Sbjct: 816 EKPAIAKLNKANELGIQIKSENEL 839 >gi|281307118|pdb|3JSL|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+- Dependent Dna Ligase From Staphylococcus Aureus gi|281307119|pdb|3JSL|B Chain B, Crystal Structure Of The Adenylation Domain Of Nad+- Dependent Dna Ligase From Staphylococcus Aureus gi|281307120|pdb|3JSN|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+- Dependent Dna Ligase From Staphylococcus Aureus Length = 318 Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 114/316 (36%), Positives = 170/316 (53%), Gaps = 14/316 (4%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVD---SPTVRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +DLRKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVEYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y G FV RGDG +GED++ ++ I IP L + P +EVRGE Y+ + FL Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E L Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 ++ LGF N + N G++ Y + S R +LPYDIDG+V KV++ Q ++G Sbjct: 237 DELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFT 296 Query: 319 ARSPRWMISHKFAEKQ 334 +SPRW I++KF ++ Sbjct: 297 QKSPRWAIAYKFPAEE 312 >gi|315924259|ref|ZP_07920483.1| NAD-dependent DNA ligase LigA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622420|gb|EFV02377.1| NAD-dependent DNA ligase LigA [Pseudoramibacter alactolyticus ATCC 23263] Length = 654 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 191/721 (26%), Positives = 329/721 (45%), Gaps = 93/721 (12%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED- 70 LSI Q +++ L +I+ + YY + ++ + E+DAL F L R E Sbjct: 6 LSINQ---QMADLIGKINAASEAYYGGREELMSNYEWDAL----------FDALIRLEKK 52 Query: 71 -----PNGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 P+ P ++G S KV H P LSL K + DL K+ D Sbjct: 53 AGYALPDSPTQRVGTSSSEASGEKVAHEYPMLSLAKTKTVADLVKW----------ADGR 102 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 ++ +L K+DG + Y++G+ RG+G G D++ AI +P + ++ P Sbjct: 103 DVWLSL--KLDGLTLVATYDEGRLNRLVTRGNGSVGTDITHLASAIDGVP--IQISEPGH 158 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR----YLNFFV 240 + +RGE I+ DF + + + YANPRN ASG L + ++ R ++ F + Sbjct: 159 LVIRGEALITYKDF----ETFLLESEETYANPRNLASGSLSLKDIDEVRRRHLQWIPFTL 214 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 L + E+ + G + + LGF PV QA+T ++ ++E S + +PY + Sbjct: 215 VHLDR--EMISWGA--RMDYLASLGFHPVERERLQADTLGDGIARWSEQIS-KGAIPYPV 269 Query: 300 DGLVYKVDEFSLQKQLGERA--RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DGLV D+ Q G + R ++ K+ + A + L I+ + I TPVA Sbjct: 270 DGLVMTYDDTDY-AQTGSVTGHHATRAGLAFKWQDTSADSILTGIEWSCAASTI-TPVAI 327 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 EPV + G ++ A+LHN + L G G +V V +A ++IPKV+ Sbjct: 328 FEPVALEGTIVKRASLHNISECRRLGIGG----------AGTKVTVIKANKIIPKVI--- 374 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 F P CP+C + ++ + + C+ C+A+ L++ FVS Sbjct: 375 ---AAKGEGNFVIPEACPVCSAPTAVAVSSSGAETL---HCSNP-ECAAKHLQKFNRFVS 427 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R +I+GL Q ++ F + F I+ +DI+ L + I + GFG+ SV N Sbjct: 428 RYGMDIDGLSIQTMNKFI---NQGF-IKSFSDIYQLAKYFDA----IREMDGFGEKSVAN 479 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +I K R + E +F+L I +G + + L ++ +N + A+ + D Sbjct: 480 LAAAIEKSRRVKPENLLFALCIPMIGVDAGKRL----INAIGLEGVLNRLNANEDFD--- 532 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 + +G + +++ +Y + +N + LL E+ + ++N S E V TG Sbjct: 533 --DIEGIGPEKSDSLLAWYADEKNASDLTRLLAELQVDMEAKQRN-SGRCEGLTFVITGK 589 Query: 658 LQKIQRHKA-QEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQF 714 +Q Q A + YV G VS +S+KTD ++ D + +K +A+ LGV I++E +F Sbjct: 590 VQHYQNRDAFKAYVESQGGHVSGSVSKKTDYLVNNDVESTSAKNRRARDLGVPIISEAEF 649 Query: 715 L 715 + Sbjct: 650 V 650 >gi|320527941|ref|ZP_08029107.1| NAD-dependent DNA ligase OB-fold domain protein [Solobacterium moorei F0204] gi|320131567|gb|EFW24131.1| NAD-dependent DNA ligase OB-fold domain protein [Solobacterium moorei F0204] Length = 658 Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 194/706 (27%), Positives = 324/706 (45%), Gaps = 97/706 (13%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSL 86 D YY + D E+DAL F L + E+ G P K+ + Sbjct: 21 DAYYDGKAEQMTDYEWDAL----------FDRLKKLEEETGVVLEDSPTMKVSSDHTAGQ 70 Query: 87 FKVTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144 K H LSL K E++ K+ I+ W K+DG + + Y+ Sbjct: 71 -KEAHEFLALSLAKTKKPEEVEKWAEGKPIWISW--------------KLDGLTLVVTYD 115 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204 GK RGDGH G +++ AI IP+ +S +I RGE IS DF ++ Sbjct: 116 NGKLSKVVTRGDGHIGTNITHLSSAIHGIPQTISEKGHLVI--RGEAVISYEDF----NQ 169 Query: 205 MIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKGQYEMLQKMR 262 + + YANPRN ASG L + ++ R +++ L T E I + G+ + M Sbjct: 170 FVMESGEDYANPRNLASGSLTLKDIEEVKKRQIHWIPFTLVYTEEDITSWGK--RMDYME 227 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNE-----MKSIRSTL-PYDIDGLV--YKVDEFSLQKQ 314 LGF V V + H ++ N+ K + + PY +DGLV Y E++ Sbjct: 228 KLGFQV---VERECVEHPTLANINKEIEQWTKKVTDAINPYPVDGLVVVYDDTEYASGGS 284 Query: 315 L-GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 + G A R + K+ ++ ++L I+ + I TPVA EPV I G + A+L Sbjct: 285 VTGHHA--TRAGFAFKWQDESVLSKLEYIEWSCAASTI-TPVAVFEPVEIEGTTVKRASL 341 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 N K L VG V V +A ++IPKV+ + +H + F P Sbjct: 342 CNISECKRLGIGD----------VGSEVEVIKANKIIPKVISV----KHAEGS-FHIPET 386 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S+ + D++ + + + +CT +C A++L++ FVS+ +I+G+ +Q L Sbjct: 387 CPVCHSKTIVDMSERGTETL---KCTNP-SCPAKKLKKFNRFVSKAGMDIDGISEQTLAR 442 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 F I DIF L + + +I ++ GFG+ S TN+ +SI++ R I + Sbjct: 443 FINE----GWITKYGDIFRLSKHHE----EITDLEGFGEKSATNIMESIDRAREIDESKL 494 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +++L I +G ++A+ L LS F + ++ IA N + + +G + A V Sbjct: 495 VYALNIPLIGKDVAKRL----LSVYPFRELVS--IARNTETTEVFSSIDGIGPEKSNAFV 548 Query: 614 EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTLQK-IQRHKAQEYVT 671 + ++P NI +E LL E+ ++ R +S + E V TG + R++ + Y+ Sbjct: 549 SWCKDPENISQLEDLLDEI--TLQRTNTVLSGNLCEGLTFVVTGDVHHYANRNELKAYIE 606 Query: 672 QLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715 G V+ +S+ T+ +I D + SK KA+QL + I++EE+F+ Sbjct: 607 SQGGKVTGSVSKSTNYLINNDVTSSSSKNTKAKQLNIPILSEEEFI 652 >gi|260591596|ref|ZP_05857054.1| putative DNA ligase [Prevotella veroralis F0319] gi|260536396|gb|EEX19013.1| putative DNA ligase [Prevotella veroralis F0319] Length = 676 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 190/720 (26%), Positives = 323/720 (44%), Gaps = 95/720 (13%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PNG 73 E+ SL ++++ D YY + I+ + E+DA AF L + E+ P+ Sbjct: 4 EIQSLVEQLNAASDAYYNGREEIMTNYEWDA----------AFDRLKKLEEETGIILPDS 53 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLE 131 P + + NL+ K H P LSL K + +L K+ I+ W Sbjct: 54 PTQNVSAD-NLTGQKEEHEFPALSLAKTKKVAELAKWAENRPIWLSW------------- 99 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + + Y+ GK RG+GH G +++ +AI I + + +I RGE Sbjct: 100 -KLDGLTLVVTYDNGKLTKVVTRGNGHIGTNITHLSKAIDGILQAIPYKGHLVI--RGEA 156 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT----RYLNFFVHGLGKTS 247 IS DF N E + YANPRN ASG L N ++ R++ F + + + Sbjct: 157 VISYPDFEQFNME----SEEEYANPRNLASGSLTLKNINEVKERHIRWIPFTL--VYEEE 210 Query: 248 EIFAKGQYEMLQKMRCLGF-PVNNGVRQANT---FHGIVSYYNEMKSIRST--LPYDIDG 301 EI + G + + GF PV+ + + T ++ + E + +S+ PY +DG Sbjct: 211 EIISWGN--RMAWLEQQGFKPVDRELIEQPTEANIQAVIDCWTERVTGKSSSPFPYPVDG 268 Query: 302 LVYKVDEFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 LV D+ + G A R + K+ ++ A T L I+ + I +PVA Sbjct: 269 LVITYDDTAYAATGSVTGHHAT--RAGYAFKWQDESAETELEYIEWSCAASTI-SPVAVF 325 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV + G + A+L N + L K G ++ V +A ++IPKV++++ Sbjct: 326 KPVELEGTTVKRASLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVV- 374 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER F P CP+CQS + +G CT C A+QL++ FVS+ Sbjct: 375 -ER---LGVFHIPEVCPVCQSATEVTESESSG--TKTLHCTN-THCPAKQLKKFGRFVSK 427 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 + NI+GL +Q + F +R AD+F L +++ + GFGD SV+ L Sbjct: 428 EGINIDGLSEQTIQKFIN----LGWVREYADLFHLNNH----ASELRTMDGFGDKSVSKL 479 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +I K RN+ R +F+L I +G ++ L LS A + +D + Sbjct: 480 LTAIEKARNVEAHRLLFALNIPLIGRDVCNRL----LSAYQIADLFHTATEATTEDVFAT 535 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 I +G + + V + ++ N ++ LL E++ S +S E V TG + Sbjct: 536 I--AGIGPEKSASFVRWMKDKDNYSMMQQLLVELNISQSSSAPTGNS-CEGLTFVITGDV 592 Query: 659 QKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715 + R++ + Y+ G V+ +S+ T +I D + K +KA++L + I++EE+F+ Sbjct: 593 HHYKNRNELKAYIENQGGKVTGSVSKSTSFLINNDIESSSGKNKKAKELSIPIISEEEFI 652 >gi|218509214|ref|ZP_03507092.1| NAD-dependent DNA ligase LigA [Rhizobium etli Brasil 5] Length = 202 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 94/205 (45%), Positives = 135/205 (65%), Gaps = 3/205 (1%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 +S +EI++HD Y + I D++YDALKRR DA+ FP+L R + P+ +G Sbjct: 1 MSGWPKEIAHHDALYQGKDQREISDADYDALKRRNDALEVRFPELIREDSPS---RHVGA 57 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 +++ V H+ P LSL+ ++ ED++ F+ +YRF + D SI FT EPKIDG ++ Sbjct: 58 APSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAFTAEPKIDGLSMS 117 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 IRYE G+ V AA RGDG +GE+V+A IR I IP L +P ++E+RGEVY++K+DFLA Sbjct: 118 IRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIRGEVYMAKSDFLA 177 Query: 201 LNDEMIAVGRKPYANPRNAASGILR 225 LN +M A G++ Y NPRN A+G LR Sbjct: 178 LNRQMEAEGKQTYVNPRNTAAGSLR 202 >gi|302345294|ref|YP_003813647.1| DNA ligase (NAD+) [Prevotella melaninogenica ATCC 25845] gi|302149440|gb|ADK95702.1| DNA ligase (NAD+) [Prevotella melaninogenica ATCC 25845] Length = 673 Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 191/722 (26%), Positives = 320/722 (44%), Gaps = 87/722 (12%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 KE+ SL +++ D YY ++ D E+DA AF L + E+ P+ Sbjct: 3 KEIQSLVNQLNAASDAYYNGRDELMTDYEWDA----------AFDKLKKLEEETGIILPD 52 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P + + N++ K H P LSL K +EDL K+ ++ I+ + Sbjct: 53 SPTQNVSAD-NVAGKKEEHEFPALSLAKTKKVEDLAKW----------AENKPIWLSW-- 99 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + + Y+ GK RG+GH G +++ AI I + + +I RGE Sbjct: 100 KLDGLTLVVTYDNGKLTKVVTRGNGHIGTNITHLSTAIDGILQTIPYKGHLVI--RGEAV 157 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFA 251 IS DF N E + YANPRN ASG L + ++ R+L + L T E Sbjct: 158 ISYPDFEQFNME----AEEEYANPRNLASGSLTLKDINEVKARHLRWIPFTLVYTEEEIN 213 Query: 252 K--GQYEMLQKMRCLGFPVNNG--VRQ--ANTFHGIVSYYNEMKS--IRSTLPYDIDGLV 303 G+ E L+ GF V + + Q N ++ ++ E + S PY +DGLV Sbjct: 214 SWGGRMEWLEHQ---GFRVVDRELIEQPTVNNIEAVIHHWTERVTGVSSSPFPYPVDGLV 270 Query: 304 YKVDEFSLQKQLGERA--RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 ++ ++ G + R + K+ ++ A T L I+ + I +PVA P+ Sbjct: 271 ISYED-TVYAATGSVTGHHATRAGYAFKWQDESAETELDYIEWSCAASTI-SPVAVFRPI 328 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + G + A+L N + L K G ++ V +A ++IPKV+++I Sbjct: 329 ELEGTTVKRASLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVI---- 374 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 F P CP+C S + +G CT C A+QL++ FVS++ Sbjct: 375 -ESVGTFHIPETCPVCHSATEVSESEVSGTRTL--HCTN-THCPAKQLKKFGRFVSKEGV 430 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 NI+GL +Q + F +R AD+F L T++ + GFG+ SVT L + Sbjct: 431 NIDGLSEQTVQKFIN----LGWVREYADLFHLTEH----ATELRTMEGFGNKSVTKLLAA 482 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I K RN+ R +F+L I VG ++ L LS + I I +D S I Sbjct: 483 IEKARNVEARRLLFALNIPLVGQDVCNRL----LSAYPLEELIKTAIESAAEDVFSTI-- 536 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G + + V + ++ N ++ LL E++ S S + V TG + Sbjct: 537 AGIGPEKSASFVRWMKDTDNQSMLQHLLAELNVSQPSSAPTGDS-CQGLTFVVTGDVHHY 595 Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R++ + Y+ G V+ +S+ T+ +I D + K +KA++L + I++E++F+ Sbjct: 596 KNRNELKAYIESQGGKVTGSVSKSTNYLINNDVESTSGKNQKAKELSIPIISEDEFIARF 655 Query: 719 QQ 720 Q Sbjct: 656 AQ 657 >gi|289679598|ref|ZP_06500488.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae FF5] Length = 245 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 95/232 (40%), Positives = 147/232 (63%), Gaps = 4/232 (1%) Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLN 180 + + + ++ EPK+DG +++ Y G V A RGDG +GED+S +R + IP ++ Sbjct: 14 EGSKVQYSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKG 73 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNF 238 P+++EVRGEV++SK F LN + +G K +ANPRNAA+G LR+L+ + IT R L F Sbjct: 74 WPDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLD-SKITANRPLEF 132 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +GLG+TS A +L+ ++ G PV+ ++ AN ++YY ++ R L Y+ Sbjct: 133 CCYGLGQTSAEIADTHIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLALTYE 192 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 IDG+V+KV+ + Q++LG RAR PRW I+HKF + T LLD++ Q+GRTG Sbjct: 193 IDGVVFKVNNLAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTG 244 >gi|317502616|ref|ZP_07960737.1| NAD-dependent DNA ligase LigA [Prevotella salivae DSM 15606] gi|315666297|gb|EFV05843.1| NAD-dependent DNA ligase LigA [Prevotella salivae DSM 15606] Length = 665 Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 192/709 (27%), Positives = 326/709 (45%), Gaps = 96/709 (13%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92 + YY + D E+DAL D + H + + + P+ P N++ E N+ K H Sbjct: 21 NAYYNGQGEQMSDYEWDAL---FDEVKHLEKETGQ-QFPDSPTNRVS-EDNIIGKKEEHE 75 Query: 93 IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152 P LSL K +L K+ + W L K+DG + + + GK Sbjct: 76 FPALSLAKTKQPVELAKWAEE-HPIW-----------LSWKLDGLTLVVTFNNGKLTKVV 123 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RG+GH G +++ AI IP+ + N ++ VRGE IS DF N E + Sbjct: 124 TRGNGHIGTNITHLATAIQGIPQEIK-NKGHVV-VRGECVISYADFEQFNIE----SEEE 177 Query: 213 YANPRNAASGILRRLNPTDITR-----------YLNFFVHGLGKTSEIFAKGQYEMLQKM 261 YANPRN ASG L + ++ + Y + + GK + K + +++ Sbjct: 178 YANPRNLASGSLTLKDINEVKQRHLVWIPFTLVYTDEVITSWGKRMDWLEKNGMKAVERE 237 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA-- 319 + P + Q +++ + E + + PY +DGLV D+ + Q G Sbjct: 238 E-IEHPTLQNIEQ------VIAKWTEKVTGKEN-PYPVDGLVITYDDTAF-AQTGSVTGH 288 Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 + R ++ K+ ++ A T L ++ I +PVA PV++ G + A+L N Sbjct: 289 HATRAGLAFKWQDESADTVLDHVEWSCAANTI-SPVAVFSPVDLEGTSVKRASLCNISEC 347 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ- 438 + L G+ G ++ V +A ++IPKV+ +I E+ D P CP+C Sbjct: 348 ERLGIGGQ----------GTKLSVIKANKIIPKVIRVI--EKVGD---LDIPCSCPVCNA 392 Query: 439 -SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +R+ +T L CT C A+QL + FVS++ NI+G+ +Q + F Sbjct: 393 PTRITISSASETKTL----HCTNP-KCPAKQLRKFARFVSKEGVNIDGMSEQTVAKFIN- 446 Query: 498 EDPAFS-IRIPADIFTLQRRQ-QTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 F ++ AD++ L+ Q S+T GFG+ SV NL SI K R++ F++ Sbjct: 447 ----FGWVKTYADLYKLKDHAIQLSSTD-----GFGEKSVRNLLRSIEKARDVEAHHFLY 497 Query: 556 SLGIRHVGAEIARSLAKYYLSYQN---FAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 +L I G ++ + L Y S Q+ A + I +D SLI +G + + Sbjct: 498 ALSIPLCGQDVCKRLLSAY-SLQDIITIASGKSENIVPASDSPFSLI--AGIGPEKSNQV 554 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK---LVFTGTLQKIQ-RHKAQE 668 V ++ + N+ VE LL++V S ++N ++E ++ K V TG + + R++ + Sbjct: 555 VTWFHDEENLAMVEELLQQVRVS----QENTAAEGDSCKGLTFVVTGDVTHYKNRNELKA 610 Query: 669 YVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715 Y+ G V+ +S+ TD +I D + SK +KAQQLG+ I++EE+F+ Sbjct: 611 YIESQGGKVTGSVSKSTDYLINNDVASQSSKNQKAQQLGIPIISEEEFI 659 >gi|153217072|ref|ZP_01950836.1| DNA ligase [Vibrio cholerae 1587] gi|124113902|gb|EAY32722.1| DNA ligase [Vibrio cholerae 1587] Length = 330 Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 114/332 (34%), Positives = 184/332 (55%), Gaps = 12/332 (3%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L+ L + + H YY P I D+EYD L R + A P+L S+ P+ ++ Sbjct: 6 QRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + V H IP LSL+ ++ +L F R+ ++ F EPK+DG Sbjct: 63 GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHST--FCCEPKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKND 197 +++ YE G AA RGDG +GE+++ +R I +IP R+ + P +EVRGEV++ K Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG--KTSEIFAKG 253 F ALN + G K + NPRNAA+G LR+L+ + IT R L F+ + +G + E+ A Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLD-SKITAQRPLAFYAYSVGVIEGGEL-ATS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ +++ G P+ + + + ++Y ++ R +L Y+IDG+V KVD+ LQ+ Sbjct: 239 HYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDIFQRRQSLAYEIDGVVIKVDDIQLQE 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQ 345 +LG AR+PRW I++KF ++ T L D++ Q Sbjct: 299 RLGFVARAPRWAIAYKFPAQEELTLLNDVEFQ 330 >gi|23011878|ref|ZP_00052110.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Magnetospirillum magnetotacticum MS-1] Length = 295 Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 98/224 (43%), Positives = 141/224 (62%), Gaps = 25/224 (11%) Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNE Y++G+ A G+ +R G DIRVGD V+V RAG+VIPKV+D+++++R DA Sbjct: 1 MLSNATLHNEGYVQGVGADGEPIREGLDIRVGDTVIVVRAGDVIPKVMDVLLDKRPADAV 60 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 PF FP CP C S+ VR+LNP+T KL A RCTGGL C AQ +ERLKHFVSR+ F++EG Sbjct: 61 PFVFPETCPACGSKAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNGFDLEGF 120 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQ----------RRQQTSTTK-----------IE 525 G+ ++ F+ A ++ PAD+F L+ RR+ S + + Sbjct: 121 GQTYIEVLFE----AGLVKQPADLFRLEFEPLKAAIVARREALSAQRRAEGEPAPKKPTK 176 Query: 526 NILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 D ++ NL S+ RR+I L RF+F+LGI +G A++ Sbjct: 177 KKGEEEDKAIKNLLASLEARRSIPLNRFLFALGIPQIGESTAKA 220 >gi|71042246|pdb|1ZAU|A Chain A, Adenylation Domain Of Nad+ Dependent Dna Ligase From M.Tuberculosis Length = 328 Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 108/321 (33%), Positives = 174/321 (54%), Gaps = 19/321 (5%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 ++ +L +E+ H YY PII D+E+D L RR +A+ P+L P+ P + Sbjct: 15 RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL---RTPDSPTQLV 71 Query: 79 GGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 GG + F+ V H LSL+ + ++L + RI+ + ++ + E KIDG Sbjct: 72 GGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIH----AEVGDAAHYLCELKIDGV 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN----IPEIIEVRGEVYI 193 +++ Y +G+ A+ RGDG +GEDV+ R I +P L+ +PE++EVRGEV+ Sbjct: 128 ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFF 187 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK 252 +DF ALN ++ G+ P+ANPRN+A+G LR+ +P R L HGLG Sbjct: 188 RLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 247 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ +R G PV+ A G+ + Y+ E R + ++IDG+V KVDE Sbjct: 248 TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEV 304 Query: 310 SLQKQLGERARSPRWMISHKF 330 +LQ++LG +R+PRW I++K+ Sbjct: 305 ALQRRLGSTSRAPRWAIAYKY 325 >gi|255994850|ref|ZP_05427985.1| DNA ligase [Eubacterium saphenum ATCC 49989] gi|255993563|gb|EEU03652.1| DNA ligase [Eubacterium saphenum ATCC 49989] Length = 647 Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 187/714 (26%), Positives = 328/714 (45%), Gaps = 101/714 (14%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGE 81 +S + YY + I+ + EYD L + +L E+ +G P +G E Sbjct: 14 LSKANKAYYSDANEIMSNREYDEL----------YDELQALEEESGIVLAASPTVNVGYE 63 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 + SL K+ H LSL K ++++L + W + + L PK+DG + I Sbjct: 64 ASSSLEKMAHEKKMLSLNKTKSVDELVE--------WLGEQEG----LLSPKLDGLTVVI 111 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRGEVYISKNDFL 199 Y++G A RGDG GE ++ + IP L IP + +RGE YI+ DF Sbjct: 112 TYDEGSLKLAVTRGDGVEGEVITKNAKTFIGIP----LKIPYAGRLVLRGEAYITYGDFN 167 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHG-LGKTSEIFAKGQYE 256 LN+E+ + Y NPRN SG +R L+P+ IT R + F V LG F K + E Sbjct: 168 KLNEEIDDAAK--YKNPRNLCSGSVRNLDPS-ITKERRVRFKVFSMLGGIEHGFNK-KRE 223 Query: 257 MLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ + +GF V V N + S E+++ +P +DGLV D+ Sbjct: 224 CMKWLGDIGFDVVHTEMVTGENLKDTMNSLMEELQN--GDIP--VDGLVLTYDDIKTCNL 279 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LGE A+ P+ I+ K++++ T L ++ RTG++ PVA PV I G + A LH Sbjct: 280 LGETAKYPKDSIAFKWSDELYDTELTGVEWNTSRTGLVNPVAVFSPVEISGTTVKRAALH 339 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D + GL A GK GD++ V +A +IP+V + I + +P C Sbjct: 340 NLDILDGL-ALGK----------GDKIRVYKANMIIPQVYENITRSGN-----IEYPKVC 383 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C + L + +++ RC C A+ +R+ HF + NI+G+ ++ ++ Sbjct: 384 PVCGCGL--KLETEGARVL---RCVND-DCPAKNAKRIVHFAGKSGINIKGISEKTIEKL 437 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + IR D+ ++ + +I + GF + S NL +I+ + ++L+RFI Sbjct: 438 IAT----GIIRNEVDLLDIENYKD----EILKLDGFKEKSFENLKKAIDGAKTMTLQRFI 489 Query: 555 FSLGIRHVG----AEIARSLAKYYLS-YQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ++ +G +IA +L + ++ ++INNI +G+++ Sbjct: 490 SAMAFTGIGYTNAGKIAAALGFDVMKLFELTPEKINNIEG--------------LGEVLT 535 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQE 668 ++ + + + ++K +N E++ KK V TG + + R ++ Sbjct: 536 ESFMAELSDENMKRRMREIIKRCKFKEITRTRN--DEVDGKKFVITGNVNIFKNRDDLKQ 593 Query: 669 YVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + G V + +S TD +I D + SK +KA++LG+ I++E+ +L + Sbjct: 594 KIEISGGQVVSSVSSNTDFLINNDRESTSSKNKKAKELGIAIISEKDIAEMLGE 647 >gi|288802753|ref|ZP_06408191.1| DNA ligase [Prevotella melaninogenica D18] gi|288334903|gb|EFC73340.1| DNA ligase [Prevotella melaninogenica D18] Length = 673 Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 190/720 (26%), Positives = 318/720 (44%), Gaps = 83/720 (11%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 KE+ SL +++ D YY ++ D E+DA AF L + E+ P+ Sbjct: 3 KEIQSLVNQLNAASDAYYNGRDELMTDYEWDA----------AFDKLKKLEEETGIILPD 52 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P + + N++ K H P LSL K +EDL K+ ++ I+ + Sbjct: 53 SPTQNVSAD-NVAGKKEVHEFPALSLAKTKKVEDLAKW----------AENRPIWLSW-- 99 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + + Y+ GK RG+GH G +++ AI I + + +I RGE Sbjct: 100 KLDGLTLVVTYDNGKLTKVVTRGNGHIGTNITHLSTAIDGILQTIPYKGHLVI--RGEAV 157 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFA 251 IS DF N E + YANPRN ASG L + ++ R+L + L E Sbjct: 158 ISYPDFEQFNME----AEEEYANPRNLASGSLTLKDINEVKARHLRWIPFTLVYAEEEIN 213 Query: 252 K--GQYEML--QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST--LPYDIDGLVYK 305 G+ E L Q R + + AN ++ ++ E + ST PY +DGLV Sbjct: 214 SWGGRMEWLEHQGFRVVDRELIEQPTIAN-IKAVIHHWTERVTGASTSPFPYPVDGLVIT 272 Query: 306 VDEFSLQKQLGERA--RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 D+ ++ G + R + K+ ++ A T L I+ + I +PVA PV++ Sbjct: 273 YDD-TVYAATGSVTGHHATRAGYAFKWQDESAETELNYIEWSCAASTI-SPVAVFRPVDL 330 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + A+L N + L K G ++ V +A ++IPKV+++I Sbjct: 331 EGTTVKRASLCNISECERLGIGDK----------GTKIAVIKANKIIPKVINVI-----E 375 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 F P CP+C S + +G CT C A+QL++ FVS++ NI Sbjct: 376 SVGTFHIPETCPVCHSATEVSESEVSGTRTL--HCTN-THCPAKQLKKFGRFVSKEGVNI 432 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GL +Q + F +R AD+F L T++ + GFG+ SVT L +I Sbjct: 433 DGLSEQTVQKFIN----LGWVREYADLFHLTEH----ATELRTMEGFGNKSVTKLLAAIE 484 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K RN+ R +F+L I VG ++ L LS + I +D S I Sbjct: 485 KARNVEARRLLFALNIPLVGQDVCNRL----LSAYPLEELIKTATGSAAEDVFSTI--AG 538 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ- 662 +G + + V + ++ N ++ LL E++ S + + V TG + + Sbjct: 539 IGPEKSASFVRWIKDTDNQSMLQHLLVELNVS-QLSSAPTGNSCQGLTFVVTGDVHHYKN 597 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 R++ + Y+ G V+ +S+ T+ +I D + K +KA++L + I++E++F+ Q Sbjct: 598 RNELKAYIESQGGKVTGSVSKSTNYLINNDVESSSGKNQKAKELSIPIISEDEFIARFTQ 657 >gi|332992966|gb|AEF03021.1| DNA ligase [Alteromonas sp. SN2] Length = 326 Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/365 (32%), Positives = 198/365 (54%), Gaps = 46/365 (12%) Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG ++NATLHN+D I L ++VGD V+++RAG+VIP+VV ++ +R Sbjct: 3 VGGVTVSNATLHNQDEIDRLG-----------VKVGDYVIIRRAGDVIPQVVSVVQAKRD 51 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 + + FP+ CP+C S V + + A RCTGGL C+AQ+ + LKHF SR AF+ Sbjct: 52 DNVKDIVFPTDCPVCGSNVEKLEDE------AVARCTGGLICAAQRKQALKHFASRKAFD 105 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLY 539 I+GLG + +D ++ + PAD F L K+ +++G + S L Sbjct: 106 IDGLGDKLVDQLVDAD----LVHSPADFFNL---------KLGDVVGLERMAEKSAAKLL 152 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 S+ + +L +F+++LGIR VG A +LA ++ E I + ++D LI Sbjct: 153 LSLEASKATTLAKFLYALGIREVGEATAANLALHF--------ETLEAIRNASED--ELI 202 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGT 657 V VG I+A + F+ P N ++ALL+ P+I + ++ + ++ K V TGT Sbjct: 203 EVQDVGGIVAAHLHNFFNEPHNTDVIDALLEAGINWPAIEKKPQS-ALPLDGKTCVVTGT 261 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L ++ R + + LGA V+ +S+ T ++ G+ GSKL KAQ+L V++ +E + L Sbjct: 262 LSEMGRSDVKAKLQLLGAKVAGSVSKNTSFLVAGEKAGSKLTKAQELDVEVWDEAKLLAF 321 Query: 718 LQQYN 722 L +++ Sbjct: 322 LAEHD 326 >gi|327313400|ref|YP_004328837.1| NAD-dependent DNA ligase domain-containing protein [Prevotella denticola F0289] gi|326944680|gb|AEA20565.1| NAD-dependent DNA ligase domain protein [Prevotella denticola F0289] Length = 684 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 198/727 (27%), Positives = 316/727 (43%), Gaps = 98/727 (13%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 KE+ SL ++++ D YY + ++ D E+DA AF L + E+ P+ Sbjct: 3 KEIQSLVKQLNAASDAYYNGREELMTDYEWDA----------AFDRLKKLEEQTGIVLPD 52 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P + + N++ K H P LSL K +EDL ++ + I+ + Sbjct: 53 SPTQNVSAD-NVAGKKEKHEFPALSLAKTKKVEDLARW----------AEGKPIWLSW-- 99 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + Y+ G+ RGDGH G +++ RAI I + + +I RGE Sbjct: 100 KLDGLTLVATYDNGRLTKVVTRGDGHIGTNITHLSRAIEGILQTVPYRGHLVI--RGEAV 157 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 IS DF N E + YANPRN ASG L + ++ R+L++ L T E Sbjct: 158 ISYPDFEKFNME----SEEEYANPRNLASGSLTLKDINEVKQRHLHWIPFTLVYTEEEID 213 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST---------------LP 296 M R PV+ + T I + + S R T P Sbjct: 214 SWGERMAWLERQGFHPVDRELISRPTAGNIQAVIDSWSS-RVTGQALNTRHPEADTQRFP 272 Query: 297 YDIDGLVYKVDEFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 Y +DGLV D+ + G A R + K+ +++A T L I+ + I + Sbjct: 273 YPVDGLVITYDDTAYAATGSVTGHHAT--RAGYAFKWQDERAETELDYIEWSCAASTI-S 329 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA +PV + G + A+L N + L GK G ++ V +A ++IPKV Sbjct: 330 PVAVFQPVELEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKIIPKV 379 Query: 414 VDIIVNERHPDAQPFSFPSFCPICQS--RVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 V ++ ER F P CP+C+S VV T L CT C A+QL++ Sbjct: 380 VSVV--ER---MGIFHVPETCPVCRSATEVVESEASGTRTL----HCTN-THCPAKQLKK 429 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 FVS++ NI+GL +Q + F I AD F L ++ + GFG Sbjct: 430 FGRFVSKEGVNIDGLSEQTVQKFIN----LGWICEYADFFHLNEH----ALQLRTMDGFG 481 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 D SV+ L ++ K R++ R +F+L I VG ++ L LS + I Sbjct: 482 DRSVSKLLAAVEKARSVEARRLLFALNIPLVGQDVCNRL----LSAYPLKELIRTATEST 537 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 +DD S I P +G + + V + ++ N ++ LL E++ SS + Sbjct: 538 DDDVFSTI--PGIGPEKSASFVRWMKDADNQPVLQHLLAELNVRQASSAPTGSS-CQGLT 594 Query: 652 LVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKI 708 V TG + + R++ + Y+ G V+ +S+ TD +I D + K +KA+ L + I Sbjct: 595 FVITGDVHHYKNRNELKAYIESQGGKVTGSVSKSTDFLINNDVKSTSGKNQKAKALSIPI 654 Query: 709 MNEEQFL 715 ++EE F+ Sbjct: 655 ISEEDFI 661 >gi|153813748|ref|ZP_01966416.1| hypothetical protein RUMOBE_04182 [Ruminococcus obeum ATCC 29174] gi|149830168|gb|EDM85261.1| hypothetical protein RUMOBE_04182 [Ruminococcus obeum ATCC 29174] Length = 538 Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 162/572 (28%), Positives = 272/572 (47%), Gaps = 79/572 (13%) Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P +G E L K TH P LSL+K + + LR FI L Sbjct: 11 DSPTVNVGYEAVDVLPKETHESPMLSLDKTKDRDVLRAFIGTHPTL------------LS 58 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG I + YE G+ + A RG+G GE ++ + IP L + + +RGE Sbjct: 59 WKMDGLTIVLTYENGELLKAVTRGNGTVGEVITNNAKVFKNIP--LKIAYRGRLVLRGEA 116 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGL--GKTS 247 I+ +DF +ND + V K Y NPRN SG +R+LN IT R + F+ L + Sbjct: 117 IITYSDFEKINDTIEDVDAK-YKNPRNLCSGSVRQLN-NQITAERNVRFYAFALVSAQDV 174 Query: 248 EIFAKGQYEMLQKMRCLGFPV-------NNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 ++ +Y+M + +R GF V + +A + N+ S D Sbjct: 175 DMHNSRKYQM-EWLRRQGFEVVEYRMVTGENLDEAMDYFAHAIEKNDFPS---------D 224 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 GLV D+ + + LG A+ PR + K+A++ T L +I+ RTG++ PVA +P Sbjct: 225 GLVALYDDIAYGESLGSTAKFPRNAFAFKWADEVRETTLREIEWSPSRTGLINPVAVFDP 284 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V + G ++ A++HN +K L + +GD + V +A +IP++ E Sbjct: 285 VELEGTTVSRASVHNVSIVKDL-----------QLGIGDTIQVYKANMIIPQIA-----E 328 Query: 421 RHPDAQPFSFPSFCPIC--QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + P CP C ++RV+R+ + V A C C+A++++ FVSR Sbjct: 329 NLTRSSNLEIPEICPACGQEARVIREND------VEALYCMNP-DCAAKKIKAFTLFVSR 381 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 DA NI+GL + L+ F F I DIF +++ + +I + GFG+ S NL Sbjct: 382 DAMNIDGLSEATLEKFIAK---GF-IHNFGDIFEIEKFRD----EIVTMEGFGEKSYENL 433 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +SI K +L + I+SLGI ++G A+ + ++ F +++ I + + ++ + Sbjct: 434 MNSIEKAEETTLAKVIYSLGIANIGLSNAKVICRH------FDDDLDKIRSADEEE---I 484 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 + +G +IA+++ +++ NP N V+ LLK Sbjct: 485 SAIDGIGPVIAKSLTKYFSNPENNQKVDHLLK 516 >gi|282877678|ref|ZP_06286493.1| NAD-dependent DNA ligase domain protein [Prevotella buccalis ATCC 35310] gi|281300250|gb|EFA92604.1| NAD-dependent DNA ligase domain protein [Prevotella buccalis ATCC 35310] Length = 657 Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 185/716 (25%), Positives = 318/716 (44%), Gaps = 88/716 (12%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDA----LKRRCDAIAHAFPDLARSEDPNG 73 R+++ L +E++ D YY + D E+DA LKR PD + +G Sbjct: 6 RQKMQQLVEELNRASDNYYSGRTESMTDFEWDAKFDELKRLEQESGLVLPDSPTTNVSDG 65 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLE 131 I G+ K H P LSL K E+L K+ I+ W Sbjct: 66 ---TITGQ------KEAHEFPMLSLAKTKKPEELVKWAEERPIWLSW------------- 103 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + + Y+ GK RG+GH G +++ AI IP + N ++ +RGE Sbjct: 104 -KLDGLTLVVTYDDGKLTKVVTRGNGHVGTNITHLAPAIQGIPATIK-NSGHLV-IRGEA 160 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 IS DF N E + YANPRN ASG L + ++ R + + L T E Sbjct: 161 VISYADFEVFNME----ADEAYANPRNLASGSLTLKDVEEVKRRKIQWIPFTLVFTDEAI 216 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQAN-TFHGIVSYYNEMKSI--RSTLPYDIDGLVYKVD 307 E L +R +GF V R ++ + H + + ++ + P+ +DGLV D Sbjct: 217 -NSWGERLDWLREMGFNVVKHERISDPSIHNVNQAIEQWTNLVTHNQCPFPVDGLVITFD 275 Query: 308 EFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + G A R ++ K+ ++ A+T L I+ + I +PVA +PV + Sbjct: 276 DTAFAATGSITGHHAT--RAGLAFKWEDEAATTELEYIEWSCAASTI-SPVAVFKPVELE 332 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G + A+L N + L G G + V +A ++IPKV+ ++ Sbjct: 333 GTTVKKASLCNISECERLGIGGP----------GSVLSVIKANKIIPKVIKVVQT----- 377 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P CP+C + D++ +G CT AC A+QL++ FVS++ +I+ Sbjct: 378 VGALEIPHECPVCHHQTRIDISKASGTRTL--HCTNE-ACPAKQLKKFNRFVSKNGMDID 434 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+ +Q L F + ADI+ L Q +I ++ GFG+ S N+ SI K Sbjct: 435 GISEQTLAKFIN----LGWLNTYADIYRLPNYAQ----QIASLEGFGNKSAGNMMRSIEK 486 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R + +F+++L I G + + L Y ++ ++ I D + +P + Sbjct: 487 SRTVEARKFLYALTIPMCGVDACKRLLDAYSLHELISKAI------EADTPEAFANIPGI 540 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVS---PSIGRHEKNVSSEIENKKLVFTGTLQKI 661 G + ++V+++Q N V+ LLK ++ PS + + E V TG + Sbjct: 541 GPETSASVVKWFQVEANRNVVDDLLKTLNVEQPST----QPTGARCEGLTFVITGDVHHY 596 Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQF 714 + R + + Y+ G V+ +S+ T+ +I ++ K +KA++LG++I++E+QF Sbjct: 597 KNRAELKAYIENQGGHVTGSVSKSTNYLINNNVNSTSGKNKKAKELGIEIISEDQF 652 >gi|325856672|ref|ZP_08172310.1| NAD-dependent DNA ligase OB-fold domain [Prevotella denticola CRIS 18C-A] gi|325483386|gb|EGC86361.1| NAD-dependent DNA ligase OB-fold domain [Prevotella denticola CRIS 18C-A] Length = 684 Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 200/731 (27%), Positives = 315/731 (43%), Gaps = 106/731 (14%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 KE+ SL ++++ D YY + ++ D E+DA AF L + E+ P+ Sbjct: 3 KEIQSLVKQLNAASDAYYNGREELMTDYEWDA----------AFDRLKKLEEQTGIVLPD 52 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P + + N++ K H P LSL K +EDL ++ + I+ + Sbjct: 53 SPTQNVSAD-NVAGKKEKHEFPALSLAKTKKVEDLARW----------AEGKPIWLSW-- 99 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP----TIPRVLSLNIPEIIEVR 188 K+DG + Y+ G+ RGDGH G +++ RAI TIP L I R Sbjct: 100 KLDGLTLVATYDNGRLTKVVTRGDGHIGTNITHLSRAIEGFLQTIPYRGHLVI------R 153 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS 247 GE IS DF N E + YANPRN ASG L + ++ R+L++ L T Sbjct: 154 GEAVISYPDFEKFNME----SEEAYANPRNLASGSLTLKDINEVKQRHLHWIPFTLVYTE 209 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST------------- 294 E M R PV+ + T I + + S R T Sbjct: 210 EEIGSWGERMAWLERQGFHPVDRELISRPTAENIQAVIDSWSS-RVTGQALNTRYPEADT 268 Query: 295 --LPYDIDGLVYKVDEFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRT 349 PY +DGLV D+ + G A R + K+ +++A T L I+ + Sbjct: 269 QRFPYPVDGLVITYDDTAYAATGSVTGHHAT--RAGYAFKWQDERAETELDYIEWSCAAS 326 Query: 350 GILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 I +PVA +PV + G + A+L N + L GK G ++ V +A ++ Sbjct: 327 TI-SPVAVFQPVELEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKI 375 Query: 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQS--RVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 IPKVV ++ ER F P CP+C+S VV T L CT C A+ Sbjct: 376 IPKVVSVV--ER---MGIFHVPETCPVCRSATEVVESEASGTRTL----HCTND-HCPAK 425 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527 QL++ FVS++ NI+GL +Q + F I AD F L ++ + Sbjct: 426 QLKKFGRFVSKEGVNIDGLSEQTVQKFIN----LGWICEYADFFHLNEH----ALQLRTM 477 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 GFGD SV+ L ++ K R++ R +F+L I VG ++ L LS + I Sbjct: 478 DGFGDRSVSKLLAAVEKARSVEARRLLFALNIPLVGQDVCNRL----LSAYPLKELIRTA 533 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI 647 +DD S I P +G + V++ ++ N ++ LL E++ S Sbjct: 534 TESTDDDVFSTI--PGIGPEKSANFVQWMKDADNQPVLQHLLAELNVRQASSAP-TGSGC 590 Query: 648 ENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQL 704 + V TG + + R++ + Y+ G V+ +S+ TD +I D + K +KA+ L Sbjct: 591 QGLTFVITGDVHHYKNRNELKAYIESQGGKVTGSVSKSTDFLINNDVESTSGKNQKAKAL 650 Query: 705 GVKIMNEEQFL 715 + I++EE F+ Sbjct: 651 SIPIISEEDFI 661 >gi|330800435|ref|XP_003288242.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum] gi|325081750|gb|EGC35255.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum] Length = 835 Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 174/653 (26%), Positives = 294/653 (45%), Gaps = 118/653 (18%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL--NK 77 E++ L +I ++D YY S I D EYD L ++ +++ + D N L NK Sbjct: 51 EINELRNKIKRYNDLYYNKSISEISDYEYDKLFKKLESLEKQINNDEDGND-NASLITNK 109 Query: 78 IGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD------------ 123 +G + N + K H+ LSL+ +++ED++ F +I +F KK Sbjct: 110 VGAPVRSNGNNNKYRHTTRMLSLQNTYSLEDIQSFKNKIEKFLLKKLKLENNTTSNSDLN 169 Query: 124 -------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSA-CIRAIPTIPR 175 N++ +++E K DG I++ Y K V RGDG GED+++ ++ IP + + Sbjct: 170 TLSSFGINNLEYSMELKYDGIGISLVYSDSKLVRILTRGDGEIGEDITSNALQFIPQLNK 229 Query: 176 VLSLNIP------EIIEVRGEVYISKNDFLALND-EMIAVGRKPYANPRNAASGILRR-- 226 +++L +P + E+RGEV ++K +N + Y N RN SGILR+ Sbjct: 230 LINLKLPNQYSNYKEFEIRGEVVLNKTYLETINKIKSDNNDTHQYKNTRNIVSGILRKNL 289 Query: 227 ------------------------LNPTDITRYL------NFFVHGL---GKTSEIFAKG 253 + DI + L +FF + K I Sbjct: 290 IEIDDEQHNENNVDDDNSSNSSSNVKKNDIEQLLHNNIKFDFFAYNFIPSNKNQTINGDT 349 Query: 254 QYEMLQKMRCLGFPVNNGV----------RQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 Q L ++ +GF V+ G +Q + I Y + R +DIDG+V Sbjct: 350 QSSRLGLLKSIGFQVDPGADVISLPTLNNKQPHDIGPIQQYIEKWNENRFKFQWDIDGIV 409 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 K++ Q +LG+ RSPRW ++KF K + +LDI +Q+GRTG +TPVA ++PV I Sbjct: 410 IKINSIDTQTKLGDINRSPRWAFAYKFNAKSEVSTILDIVLQVGRTGKVTPVALVDPVVI 469 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII------ 417 G I+ ATL+N +YI+ L + G +VL++RAG+VIPK++ I Sbjct: 470 HGVTISRATLNNLNYIQKL-----------QLNKGSKVLIERAGDVIPKIISKINVPEQQ 518 Query: 418 ---VNERHPDA---QPFSFPS----FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 + D F S CP C + +L K G + + C C Q Sbjct: 519 PQEQQLQPEDGYLKNIFKCNSNGNLVCP-CANE--SELIQKPGYI--DYFCVDS-NCPDQ 572 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527 Q + + FV + A NI+G+G Q+ F+ I D++ L++ + +++ + Sbjct: 573 QFQEISWFVDKKAMNIKGIGISQIKDLFEHN----FIEDAGDLYLLKKYK----SQLLEL 624 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580 G+ V V N+ ++I + ++ L + +GI +G ++ LA+ + N Sbjct: 625 KGYNHVKVNNMLEAIEESKSRGLSSLLCGMGIPGIGRANSKILAQKFQHLDNL 677 >gi|325269002|ref|ZP_08135623.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608] gi|324988623|gb|EGC20585.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608] Length = 684 Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 195/728 (26%), Positives = 319/728 (43%), Gaps = 100/728 (13%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PN 72 KE+ L ++ D YY + ++ D E+DA AF L + E+ P+ Sbjct: 3 KEIQRLVDRLNAASDAYYNGREELMTDYEWDA----------AFDRLKKLEEQTGIVLPD 52 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P + + N++ K H P LSL K +EDL ++ + ++ + Sbjct: 53 SPTQNVSAD-NVAGKKEKHEFPALSLAKTKKVEDLARW----------AEGKPVWLSW-- 99 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + Y+ G+ RGDGH G +++ RAI I + + +I RGE Sbjct: 100 KLDGLTLVATYDNGRLTKVVTRGDGHIGTNITYLSRAIEGILQTVPYRGHLVI--RGEAV 157 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT-SEIF 250 IS DF N E + YANPRN ASG L + ++ R+L++ L T EI Sbjct: 158 ISYPDFEKFNME----SEEAYANPRNLASGSLTLKDINEVRQRHLHWIPFTLVYTEGEIG 213 Query: 251 AKGQYEMLQKMRCLGF-PVNNGV---RQANTFHGIVSYYNEMKSIRS-----------TL 295 + G E + + GF PV+ + A ++ ++ + ++ Sbjct: 214 SWG--ERMAWLERQGFHPVDRELISRPTAGNIQAVIDSWSSRVTGQALNTRHPAADPQCF 271 Query: 296 PYDIDGLVYKVDEFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL 352 PY +DGLV D+ + G A R + K+ +++A T L I+ + I Sbjct: 272 PYPVDGLVITYDDTAYAATGSVTGHHAT--RAGYAFKWQDERAETELDHIEWSCAASTI- 328 Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412 +PVA +PV + G + A+L N + L GK G ++ V +A ++IPK Sbjct: 329 SPVAVFQPVELEGTTVKRASLCNISECERLGIGGK----------GTKIAVIKANKIIPK 378 Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQS--RVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 VV ++ ER F P CP+C+S VV T L CT C A+QL Sbjct: 379 VVSVV--ER---TGIFHVPETCPVCRSATEVVESEASGTRTL----HCTNA-HCPAKQLR 428 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 + FVS++ NI+GL +Q + F I AD F L ++ + GF Sbjct: 429 KFGRFVSKEGVNIDGLSEQTVQKFIN----LGWICEYADFFHLNEH----ALQLRAMDGF 480 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH 590 GD SV+ L ++ K R++ R +F+L I VG ++ L LS + I Sbjct: 481 GDRSVSKLLAAVEKARSVEARRLLFALNIPLVGQDVCNRL----LSAYPLKELIRTATES 536 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 +DD S I P +G + + V + ++ N ++ LL E++ SS + Sbjct: 537 TDDDVFSTI--PGIGPEKSASFVRWMKDEDNQPVLQHLLAELNVRQASFAPTGSS-CQGL 593 Query: 651 KLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVK 707 V TG + + R++ + Y+ G V+ +S+ TD +I D + K +KA+ L + Sbjct: 594 TFVITGDVHHYKNRNELKAYIESQGGKVTGSVSKSTDFLINNDVESTSGKNQKAKALSIP 653 Query: 708 IMNEEQFL 715 I++EE F+ Sbjct: 654 IISEEDFI 661 >gi|317455470|pdb|3PN1|A Chain A, Novel Bacterial Nad+-Dependent Dna Ligase Inhibitors With Broad Spectrum Potency And Antibacterial Efficacy In Vivo Length = 318 Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 110/323 (34%), Positives = 179/323 (55%), Gaps = 21/323 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 5 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 62 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K++ Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 293 Query: 308 EFSLQKQLGERARSPRWMISHKF 330 + +LQ +LG +++PRW I++KF Sbjct: 294 DIALQNELGFISKAPRWAIAYKF 316 >gi|289751694|ref|ZP_06511072.1| LOW QUALITY PROTEIN: DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis T92] gi|289692281|gb|EFD59710.1| LOW QUALITY PROTEIN: DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis T92] Length = 409 Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 128/427 (29%), Positives = 206/427 (48%), Gaps = 36/427 (8%) Query: 261 MRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 +R G PV+ A G+ + Y+ E R + ++IDG+V KVDE +LQ++LG Sbjct: 8 LRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEVALQRRLGS 64 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + ATLHN Sbjct: 65 TSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNAS 124 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 IK R G + +GD V++++AG+VIP+V+ +V R + F P+ CP C Sbjct: 125 EIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPEC 173 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S + + K G A RC C Q ER+ H SR+ +IE LG + ++ Sbjct: 174 GSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQA 228 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + I ++F L R T G + L +++K + L R + +L Sbjct: 229 K----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVAL 284 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 IRHVG AR+LA + S ++ I A + D L V VG IA A+ E++ Sbjct: 285 SIRHVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGPTIAAAVTEWFA 334 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + V+ + +++V + +V TG+L R A+E + G Sbjct: 335 VDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKA 394 Query: 678 SAILSRK 684 + R+ Sbjct: 395 AGSCRRR 401 >gi|215428469|ref|ZP_03426388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T92] Length = 411 Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 128/427 (29%), Positives = 206/427 (48%), Gaps = 36/427 (8%) Query: 261 MRCLGFPVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 +R G PV+ A G+ + Y+ E R + ++IDG+V KVDE +LQ++LG Sbjct: 9 LRAWGLPVSEHTTLATDLAGVRERIDYWGEH---RHEVDHEIDGVVVKVDEVALQRRLGS 65 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +R+PRW I++K+ ++A T+LLDI + +GRTG +TP A + PV + G+ + ATLHN Sbjct: 66 TSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNAS 125 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 IK R G + +GD V++++AG+VIP+V+ +V R + F P+ CP C Sbjct: 126 EIK---------RKG--VLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPEC 174 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 S + + K G A RC C Q ER+ H SR+ +IE LG + ++ Sbjct: 175 GSPLAPE---KEGD--ADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQA 229 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + I ++F L R T G + L +++K + L R + +L Sbjct: 230 K----VIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVAL 285 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 IRHVG AR+LA + S ++ I A + D L V VG IA A+ E++ Sbjct: 286 SIRHVGPTAARALATEFGS-------LDAIAAASTD---QLAAVEGVGPTIAAAVTEWFA 335 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + V+ + +++V + +V TG+L R A+E + G Sbjct: 336 VDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKA 395 Query: 678 SAILSRK 684 + R+ Sbjct: 396 AGSCRRR 402 >gi|317470612|ref|ZP_07929998.1| DNA ligase [Anaerostipes sp. 3_2_56FAA] gi|316901903|gb|EFV23831.1| DNA ligase [Anaerostipes sp. 3_2_56FAA] Length = 559 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 154/571 (26%), Positives = 279/571 (48%), Gaps = 51/571 (8%) Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 G+G GE V+ + +P+ ++ +I RGE I +DF +N++M + + Y Sbjct: 34 GNGEVGEVVTNNAKVFVNLPKKIAYKGTLVI--RGEAVIHYSDFRRMNEDMEDLDSR-YK 90 Query: 215 NPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNG 271 NPRN SG +R+LN ++T R + F+ + ++ F E R LGF + + Sbjct: 91 NPRNLCSGSVRQLN-NEVTAKRNVRFYGFSVADVPDVDFHNSVEEKFIWARSLGFDIVDY 149 Query: 272 VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 V A T + DGLV D+ + + LG A+ PR I+ K+A Sbjct: 150 V--AVTKDTVAEEVERFSQAIENNDQPSDGLVLIYDDIAYGRSLGTTAKFPRDSIAFKWA 207 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 ++ A T L +I+ RTG++ PVA +PV + G+ ++ A+LHN ++ L Sbjct: 208 DEIAETTLKEIEWSPSRTGLINPVAIFDPVELEGSTVSRASLHNISVMEEL--------- 258 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 ++ VGD++ V +A +IP++ + N+ P P CP C + + Sbjct: 259 --ELGVGDQISVYKANMIIPQLAE---NQTRSGDAP--IPDTCPACGGKTEIEEENGIRT 311 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 LV ++ CSA++++ HFVSRDA N++GL + L K D + D+F Sbjct: 312 LVCPNQF-----CSAKKIKLFSHFVSRDAMNVDGLSEASL---HKMMDKGLLNEL-YDLF 362 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLA 571 TL+ ++ +I + GFG+ S + + ++L +F++SLGI +VG A+ + Sbjct: 363 TLKEHKE----EIIEMEGFGEKSFIIWRMPLRGTKKVTLPKFLYSLGIANVGLSNAKLIC 418 Query: 572 KYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +Y F +++ I +D+ + + +G II +A+ +++ N V+ LL+ Sbjct: 419 RY------FEDDLDAIRNAEAEDFTA---IDGIGPIIGEAVSGYFRLENNKQTVDRLLQY 469 Query: 632 VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIV 690 V R + ++ K V TG+L+ + R + QE + LG + +++KTD +I Sbjct: 470 VEIE-KRQTEETEKLLDGKTFVITGSLEHYENRKQLQEQIEILGGKATGSVTKKTDYLIN 528 Query: 691 G--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 ++ SK +KA +L + I+ EE+F+ +++ Sbjct: 529 NNKNSASSKNKKAMELSIPIITEEEFMDMIK 559 >gi|282881715|ref|ZP_06290378.1| DNA ligase domain protein [Prevotella timonensis CRIS 5C-B1] gi|281304474|gb|EFA96571.1| DNA ligase domain protein [Prevotella timonensis CRIS 5C-B1] Length = 655 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 183/725 (25%), Positives = 315/725 (43%), Gaps = 104/725 (14%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------P 71 ++ + L +++ D YY ++ D E+DAL F +L + E P Sbjct: 4 QQRMRKLVDKLNLASDNYYGGKPELMTDYEWDAL----------FDELKQLEMSSGVVLP 53 Query: 72 NGPLNKIG-GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P N++ GEMN K H P LSL K DL K+ + ++ + Sbjct: 54 DSPTNRVSDGEMNGK--KEAHEFPALSLAKTKQPADLVKW----------AEGKPVWLSW 101 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 K+DG + Y+ G+ RG+GH G +++ +AI +P + +I RGE Sbjct: 102 --KLDGLTLVATYDDGRLSKVVTRGNGHIGTNITHLAKAIGGMPATIPFQGHTVI--RGE 157 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-----------YLNFF 239 IS DF N E YANPRN ASG L + ++ R ++ Sbjct: 158 AVISYADFEVFNLE----SDDAYANPRNLASGSLTLKDVKEVERRHIQWIPFTLVFVEQE 213 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ + + + +++ R + P V Q ++ + E K + P+ + Sbjct: 214 IKTWGEQMDWLEQQGFHPVERER-INEPSLPVVEQ------VIERWTE-KVTQKRNPFPV 265 Query: 300 DGLVYKVDEFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 DGLV D+ S G A R ++ K+ ++ A+T L I+ + I +PVA Sbjct: 266 DGLVVVFDDISFAATGSVTGHHAT--RAGLAFKWQDEAATTTLRHIEWSCAASTI-SPVA 322 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 PV + G + A+L N K L G G + V +A ++IPKV+ + Sbjct: 323 VFAPVELEGTTVQRASLCNISECKRLGIGGP----------GSTLSVIKANKIIPKVIRV 372 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 I + F P CP+C V + +G L CT AC A+Q+++ FV Sbjct: 373 IQS-----VGTFDIPKSCPVCHHEAVVRESAVSGTLTL--HCTNE-ACPAKQIKKFDRFV 424 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 S+ NI+G+ +Q LD F I ADI+ R ++ ++ GFG+ S+ Sbjct: 425 SKAGMNIDGISEQTLDKFIN----LGWIETYADIY----RLSAHAAELASLEGFGEKSMR 476 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 N+ SI + R + F+++L I G ++ + L + Y A+ I+ + D Sbjct: 477 NIMQSIEQSRTVEAHHFLYALSIPLCGVDVCKRLLEAY----PLAELISVATTATSLD-- 530 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLV 653 + +P +G + ++V ++Q N V LL EV PS+ + + + V Sbjct: 531 AFAHIPGIGPEKSASLVTWFQGEANQRIVNDLLSEVQIEEPSL----QPQGARCQGMTFV 586 Query: 654 FTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMN 710 TG + + R + + Y+ G V+ +S+ T +I D + K +KA+ LG+ I++ Sbjct: 587 ITGDVHHYKNRAELKSYIESQGGKVTGSVSKSTTYLINNDVNSTSGKNKKAKDLGISIIS 646 Query: 711 EEQFL 715 E++F+ Sbjct: 647 EDEFV 651 >gi|289669579|ref|ZP_06490654.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 511 Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 143/520 (27%), Positives = 226/520 (43%), Gaps = 157/520 (30%) Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRV 401 I+IQIGRTG TPVARL+PV++ G ++TNATLHN D I LD +RVGD V Sbjct: 7 IEIQIGRTGAATPVARLKPVHVAGVIVTNATLHNADQIARLD-----------VRVGDTV 55 Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461 +V+RAG+VIP+V ++ ++R P Q + P+ CP+C S +VR+ G+ A RC+G Sbjct: 56 IVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSEIVRE----EGQ--AVWRCSGE 109 Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQ--------------------------QLDFFF 495 L C AQ+ E +HFVSR A +++GLG++ QL Sbjct: 110 LTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVQGVADIYLLTVDQLLQLRMIS 169 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIE---NILGFGDVSVT---------------- 536 +E P +R + Q TT + ++ G +V T Sbjct: 170 TAESPHAFLREAREHLASGAYAQLETTVVGIGVDMAGEREVPPTWQADLLRAGLPKFDWN 229 Query: 537 ----------NLYDSINKRRNISLERFIFSLGI---------------------RH---- 561 NL ++I R+ +LERF+F+LGI RH Sbjct: 230 RKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFGDLELIRHLPWP 289 Query: 562 -------VGAEIARSLAKYYLSYQNFAQEINNII------------------AHNNDDWL 596 +G E+AR+L ++L Q I++++ A + L Sbjct: 290 LFKRVPDIGGEVARALG-HFLDQPGNQQAIDDLLQRGVRIGDTHPPSPKLREALSFASVL 348 Query: 597 SLIRVPLVGDIIAQ-------------------------------AIVEFYQNPRNICAV 625 + +P V + AQ A++++ P N Sbjct: 349 EDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVVAALLQWLDRPENAALA 408 Query: 626 EALLKEVSPSIGR---HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 A + + + R + + ++ + +V TGTL + R A++ + LGA V+ +S Sbjct: 409 SAAQQAMETVLARLPEADALQTGPLDGQSVVITGTLAALTRDAAKQRLEALGAKVAGSVS 468 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 +KT ++ G+ GSKL+KAQ LGV I +E + L L ++ Sbjct: 469 KKTAFLVAGEEAGSKLDKAQSLGVDIWDEARLLAFLSEHG 508 >gi|317968249|ref|ZP_07969639.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0205] Length = 372 Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 118/403 (29%), Positives = 201/403 (49%), Gaps = 39/403 (9%) Query: 320 RSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 ++PRW I+ K+ ++A ++LL + Q+GRTG++TPVA EPV + G ++ ATLHN D + Sbjct: 3 KAPRWAIALKYPAEEAPSKLLRLSCQVGRTGVITPVAEFEPVPLAGTSVSRATLHNADRL 62 Query: 380 KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 L D+ GD ++V++AGE+IP+VV ++ R A+ P CP C S Sbjct: 63 LEL-----------DLHAGDTIVVRKAGEIIPEVVRVLPELRPAAAERLELPHTCPECGS 111 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 +VR+ AA RC +C A L+H+VS+ A +++GLG + ++ Sbjct: 112 ELVREEGE------AATRCVNS-SCPAILRGALRHWVSKGALDVDGLGSKLIEQLVDR-- 162 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI 559 + I L R +E + G S NL ++ + R ++ LGI Sbjct: 163 -----GLVGSIAGLYRLDCALLCSLERM---GSKSAENLVAALADSKQQPWHRQLYGLGI 214 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 HVG A++LAK + S A +++ + ++ V +G IAQ++ +++ Sbjct: 215 HHVGEVNAKALAKAFPS----AADLSTAATETPE---AITAVYGIGAEIAQSLQQWFSTG 267 Query: 620 RN---ICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 N + ++E L S + E + + + + V TGTL + R +AQ + G Sbjct: 268 ANQELLTSLERLGFSLASGDEEQPEPSGPAPLTGQTFVLTGTLPSLSRSQAQALIEAAGG 327 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 V+ +S+KT ++ G+ GSKL KA+ LG+ +++E LL Sbjct: 328 KVTGSVSKKTSYVVAGEEAGSKLSKAESLGIPVLDEASLQALL 370 >gi|257458169|ref|ZP_05623323.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580] gi|257444463|gb|EEV19552.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580] Length = 641 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 188/724 (25%), Positives = 325/724 (44%), Gaps = 115/724 (15%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 + LE I H + YY ++P I D+++D L D RS DP L Sbjct: 7 IQELEALIKKHQNLYYN-AEPEISDADFDMLW-----------DELRSLDPQNELFATVP 54 Query: 81 EMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + + F K H IP S EK + E +K W +K + F ++ K+DG + Sbjct: 55 KDSADGFPKAEHIIPMGSQEKAADPESFQK--------WAEKMPFTEFL-VQYKLDGASM 105 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN--------IPEIIEVRGEV 191 ++YEKG+ + A RGDG G+D++A ++ + + VL L P VRGEV Sbjct: 106 ELQYEKGRLIRAVTRGDGKIGDDITANVKKMQGV--VLELKGDSAPTGAAPFSGGVRGEV 163 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVH--GLGKTSEI 249 ++K E++ N RNAA+G+++R + + + +L + G Sbjct: 164 LMTK--------EVLHRFYPDKKNCRNAANGLMKRKDGSG-SEHLEIICYDAAAGTIGHP 214 Query: 250 FAK-----GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 F + + E L ++ GF + V + + ++ Y + IRST+PYDIDGLV Sbjct: 215 FTEPAPFTTETEKLNWLKTQGF-LQVPVTRCGSVREVIDYRAHIMDIRSTIPYDIDGLVI 273 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL-TPVARLEPVNI 363 K D + RAR P I+ KF+ ++A T L ++ +G+ TP+A ++PV + Sbjct: 274 KNDLIDIADL--SRAR-PEKQIAFKFSLEEAITALR--SVEWSESGVTYTPIALIDPVQL 328 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + A L N + I L ++++G RVLV + GE+IPK+ +I E Sbjct: 329 AGTTVKRANLCNPNMIAEL-----------NLKIGSRVLVTKRGEIIPKIEALI--ENPA 375 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 A+P PS C C + V+RD + C AC R++ ++ D +I Sbjct: 376 SAKPIEQPSRCTSCGT-VLRDEGTRL-------YCPNP-ACPKLIHHRIEKWI--DTLDI 424 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF---GDVSVTNLYD 540 + G + F ++ IR +D++TL +E + F G S +Y Sbjct: 425 QDFGTTLIKRLFDTQ----RIRSVSDLYTLT---------VEELAAFERMGQKSAEKVYR 471 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +++ +R I L F+ I +G + L + ++A + +D+ ++ + Sbjct: 472 ALHAKREIPLPVFVAGFDIEGIGRTMMEKLVDAGFDT------LEKLLAASEEDFAAVYQ 525 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE----IENKKLVFTG 656 G ++A + + ++ +L+ I + VS++ + K FTG Sbjct: 526 ---FGSVLAHTLTAGLREVKD-----EMLRLTGSGIIVIQPPVSAQENLPLAGKSFCFTG 577 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQF 714 L ++R +A+ V Q G V + +++ ++ D+ SK +KAQ+LG I+ EE+F Sbjct: 578 ELNSLKRKEAEAMVQQKGGTVKSSVTKGLTYLVTNTPDSGSSKNKKAQELGTVIITEEEF 637 Query: 715 LFLL 718 L LL Sbjct: 638 LKLL 641 >gi|281420079|ref|ZP_06251078.1| putative DNA ligase [Prevotella copri DSM 18205] gi|281405879|gb|EFB36559.1| putative DNA ligase [Prevotella copri DSM 18205] Length = 656 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 195/728 (26%), Positives = 328/728 (45%), Gaps = 93/728 (12%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED--- 70 +E+ ++ SL + ++ D YY ++ D E+DAL F L R E+ Sbjct: 1 MEEKLLQMKSLVERLNQASDSYYNGKGELMTDYEWDAL----------FDQLKRLEEETG 50 Query: 71 ---PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 PN P N++ E ++ K H LSL K + DL K+ +D I+ Sbjct: 51 EILPNSPTNRVS-EDSIVGKKEEHEFAALSLAKTKQVSDLVKW----------AEDRPIW 99 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + K+DG + + Y+ GK RG+GH G +++ AI IP +S + V Sbjct: 100 ISW--KLDGLTLVVTYDGGKLTKIVTRGNGHIGTNITHLAPAISGIPATISEKGHLV--V 155 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 RGE IS DF ++ I YANPRN ASG L + ++ R++ + L T Sbjct: 156 RGEAVISYADF----EQFIIESEGDYANPRNLASGSLTLKDIEEVKQRHIQWIPFTLVYT 211 Query: 247 S-EIFAKGQYEMLQKMRCLGF-PVNNGVRQANTFHGI---VSYYNEMKSIRSTLPYDIDG 301 E+ + G E +Q ++ LG PV T I + + E + + P+ +DG Sbjct: 212 ERELSSWG--ERMQMLKDLGMNPVERERIDHPTTENIQLEIDKFTEKVTSKKN-PFPVDG 268 Query: 302 LVYKVDEFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 LV D+ + G A R + K+ ++ A T L I+ + I TPVA Sbjct: 269 LVICYDDTAYAATGSVTGHHA--TRAGFAFKWQDEHADTVLDHIEWSCAASTI-TPVAVF 325 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV + G + A+L N + L K G R+ V +A ++IPKV++I Sbjct: 326 KPVELEGTTVQRASLCNVSECERLGIGDK----------GTRLQVIKANKIIPKVINIT- 374 Query: 419 NERHPDAQPFSFPSFCPICQS-RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 F P+ CP+C + VVR+ T L CT AC A+QL++ FVS Sbjct: 375 ----EVVGSFVIPAECPVCHAPAVVRESESGTKTL----HCTNA-ACPAKQLKKFARFVS 425 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 ++ NI+G+ +Q + +K + F I AD + L+ +I GFG SV+N Sbjct: 426 KEGINIDGISEQTV---WKFINHGF-ISEYADFYKLKNY----AFEISCFEGFGKKSVSN 477 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +S+ K R+ +++L I G ++A+ L LS + I DD Sbjct: 478 LLESVEKSRHTDGRHLLYALNIPLCGGDVAKKL----LSRYKVKELIETARLSMFDD--E 531 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF--T 655 + +G + + ++++ + V+ LL E+ I ++ V + + + L F T Sbjct: 532 FASIDGIGPEKSAKFIAWFKDDVHFLHVQHLLSEL---IIEEQEPVETGNKCQGLTFVVT 588 Query: 656 GTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEE 712 G + + R++ + Y+ G V+ +S+ T+ +I D + SK +KA +L + I+ E+ Sbjct: 589 GDVHHYKNRNELKAYIESQGGKVTGSVSKSTNFLINNDAASQSSKNKKAHELNIPIITED 648 Query: 713 QFLFLLQQ 720 +F+ Q+ Sbjct: 649 EFIEKFQE 656 >gi|307565636|ref|ZP_07628114.1| NAD-dependent DNA ligase domain protein [Prevotella amnii CRIS 21A-A] gi|307345668|gb|EFN91027.1| NAD-dependent DNA ligase domain protein [Prevotella amnii CRIS 21A-A] Length = 676 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 192/745 (25%), Positives = 328/745 (44%), Gaps = 110/745 (14%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED---- 70 E RK + L ++ D YY I+ D E+DA AF +L + E Sbjct: 3 ENKRKRMEELVLCLNNASDAYYNGKGEIMTDFEWDA----------AFDELKKIEKELGI 52 Query: 71 --PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSI 126 P+ P N + + N++ K H P LSL K + E L K+ I+ W Sbjct: 53 ILPSSPTNNVSAD-NITGKKEEHEYPALSLAKTKSEEVLVKWAANRPIWLSW-------- 103 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 K+DG + + Y++GK RG+GH G +++ AI I + ++N E + Sbjct: 104 ------KLDGLTLVVTYDEGKLTKVVTRGNGHIGTNITHLASAIKGI--LPTINTKEHLV 155 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNF----FVH 241 +RGE IS DF N E + YANPRN ASG L + ++ +R+L + VH Sbjct: 156 IRGEAVISYADFEIFNME----SEEEYANPRNLASGSLTLKDINEVKSRHLQWKPFTLVH 211 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNN----GVRQANTFHGIVSYYNEM---KSIRST 294 I + G E + + LGF + +++ + + + + Sbjct: 212 C---DRTIISWG--ERMSFLDSLGFNTVEREFIAIPSIKNIEDVIAAWTQRVTDSARKDK 266 Query: 295 LPYDIDGLVYKVDEFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 PY +DGLV D+ G A R ++ K+ ++ T L I+ T Sbjct: 267 QPYPVDGLVITYDDTDYAATGSVTGHHA--TRAGLAFKWQDESMETELKFIEWSCA-TST 323 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 ++PVA PV I G ++ A+L N + L G D G +++V +A ++IP Sbjct: 324 ISPVAVFAPVEIEGTIVKRASLCNISECERL--------GIGD--AGTKIMVIKANKIIP 373 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 KV I V++R F PS CP+CQ N K+G CT C A+QL++ Sbjct: 374 KV--ICVSKR---IGSFLIPSVCPVCQCPTEIVENEKSG--TRTLHCTNHY-CPAKQLKK 425 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L FVS++ NI+GL +Q + F ++ +DIF L+++++ I GFG Sbjct: 426 LARFVSKEGVNIDGLSEQTMQKFIN----LGWVKEYSDIFQLKKKEKELKQ----IDGFG 477 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 S NL+ +I K R + ++ +++L I +G ++ L Y + + IA Sbjct: 478 TKSCENLFSAIEKSRIVEAKQLLYALSIPLIGKDVCNRLLSTYSLEELISMSRPTTIASQ 537 Query: 592 N--------DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 D + +G + + V + ++ N ++ LL+E++ K Sbjct: 538 QLLFNEAYADTETIFSTIAGIGPEKSTSFVRWMRDENNYTQLQHLLQELTI------KQT 591 Query: 644 SSEIENKK-----LVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--G 695 ++EI+ K V TG + + R++ + Y+ G V+ +S+ T+ +I D Sbjct: 592 TTEIKGKSCKGLTFVITGDVYHYKNRNELKAYIESEGGKVTGSVSKNTNYLINNDTESIS 651 Query: 696 SKLEKAQQLGVKIMNEEQFLFLLQQ 720 +K +KA++L + I++E+ F+ L + Sbjct: 652 NKNKKAKELNIPIISEDDFISLFNK 676 >gi|3746807|gb|AAC64067.1| NAD-dependent DNA ligase homolog [Bartonella quintana] Length = 180 Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 84/177 (47%), Positives = 120/177 (67%), Gaps = 1/177 (0%) Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248 +VY+ + +F ALN G+ +ANPRNAA+G LR+L+P +R L+FF + G+ SE Sbjct: 3 KVYMRRENFQALNMSQQEKGKFVFANPRNAAAGSLRQLDPRITASRKLHFFAYACGEVSE 62 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 FA Q EM++K++ GF +N + T I+SYY++++ R +L YDIDG+VYKV++ Sbjct: 63 TFAASQMEMMKKLKEYGFFINPLTKSFKTLEEIISYYHDIEECRHSLSYDIDGIVYKVND 122 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 LQ +LG +RSPRW ++HKF ++A L IDIQ+GRTG LTPVARL P+ IGG Sbjct: 123 LKLQMRLGFVSRSPRWAVAHKFPAEKAMALLEGIDIQVGRTGALTPVARLAPITIGG 179 >gi|283769205|ref|ZP_06342109.1| NAD-dependent DNA ligase domain protein [Bulleidia extructa W1219] gi|283104181|gb|EFC05560.1| NAD-dependent DNA ligase domain protein [Bulleidia extructa W1219] Length = 656 Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 181/717 (25%), Positives = 324/717 (45%), Gaps = 89/717 (12%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ + +L Q+++ + YY + I+ D E+D L A+ + P+ P K Sbjct: 4 KERMLALIQQLNEASNAYYNGQREILSDQEWDRLFDELKALEEQTGLIL----PDSPTQK 59 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + + + K H P LSL K ++ +L K+ D + I+ + K+DG Sbjct: 60 VSADEIVGQ-KEIHEFPALSLAKTKSVNELVKW----------ADGHPIWMSW--KLDGL 106 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + + YEKGK RGDGH G +++ + + IP+ + P + VRGE IS D Sbjct: 107 TLVVTYEKGKLEKVVTRGDGHVGTNITHLVDGLFGIPK--EIRYPGRLIVRGEAIISYVD 164 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNF----FVHGLGKTSEIFAK 252 F ++ + + YANPRN ASG L +++ R ++F VH EI + Sbjct: 165 F----EQYVRETGENYANPRNLASGSLSLKKASEVLERKIHFRPFTLVHC---DQEINSW 217 Query: 253 GQYEMLQKMRCLGFPVNNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 G + + + LGF V + ++ ++E R PY +DGLV ++ Sbjct: 218 G--DRMGFLTKLGFDVVEHTFIEKPSEESVQKVLKQFSEKVKQRKN-PYPVDGLVIVYED 274 Query: 309 FSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 G A R ++ K+A++ ++L+ ++ +TPVA EPV + G Sbjct: 275 IQYASSGTVTGHHA--TRSGLAFKWADQSKLSKLIRVEWS-NAISTITPVAVFEPVELEG 331 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + A+L N + L + GG ++ V +A +IPKV+ ++ Sbjct: 332 TTVQRASLANISECERLG----IGSGGTEVE------VIKANMIIPKVISVV-----KKV 376 Query: 426 QPFSFPSFCPIC----QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P+ CP+C + V KT K AH C A+ L++ FVS+ Sbjct: 377 GNLEIPTLCPVCGKPTKIHVSEISETKTLKCSNAH-------CPAKALKKYVRFVSKQGM 429 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I+G+ + L F I+ DI+ L+ R++ IEN+ GFG S N+ S Sbjct: 430 DIDGISEATLSTFIAQG----WIQNYGDIYRLKDRKEA----IENLDGFGLKSAENILTS 481 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + K + + ++F+F+L I VG ++A L + Y E+ + D+ S + Sbjct: 482 LEKAQVVRGDKFLFALSIPLVGIDVASRLLRVYP-----LMELITLAKEKELDFFS--HI 534 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G ++A V + ++ N +E LL ++ H+ + S ++ V TG + Sbjct: 535 DGIGPQKSEAFVRWMKDLNNQKEMEDLLSFLTIE-DLHKVSHDSVLDGLTFVVTGEVHYF 593 Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715 + R++ +E+++ G V++++S TD +I D + SK KA+ LG+ I++E F+ Sbjct: 594 KNRNELKEWISARGGKVASVVSGSTDFLINNDIHSTSSKNAKAKSLGIPILSEADFM 650 >gi|291525249|emb|CBK90836.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Eubacterium rectale DSM 17629] gi|291529292|emb|CBK94878.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Eubacterium rectale M104/1] Length = 656 Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 183/718 (25%), Positives = 316/718 (44%), Gaps = 87/718 (12%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG---- 73 + ++ L + ++ YY + I+ + E+DA+ F +L + E G Sbjct: 7 KDKIDELVESLNRASKAYYNGADEIMPNYEWDAM----------FDELTQLEKETGYIRH 56 Query: 74 --PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P G E + H P LSL K +IE+L+K+ + W L Sbjct: 57 DSPTQNAGYEAEAG-NREPHEYPALSLAKTKSIEELKKWAGDM-PIW-----------LS 103 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + + Y+ G+ V RG+G G +++ AI P+ + + VRGE Sbjct: 104 WKLDGLTLVLTYDGGRLVKILTRGNGTVGSNITFLQDAISGFPKEIPYKGHMV--VRGEA 161 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSE-I 249 IS DF LND I + YANPRN ASG L + ++ R ++ F+ L + I Sbjct: 162 TISYTDFKLLND-TIEDDDEKYANPRNLASGTLNLDDVEEVKRRHVVFYAFTLVHIDDDI 220 Query: 250 FAKGQYEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + G + + + + F V A + + +++S R +P +DGLV D Sbjct: 221 ISWG--DRMSYLSDMKFNVVKREATDAAGLDEAVKRWTRDVESGRMDVP--VDGLVICYD 276 Query: 308 EFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + G A R + K+ ++ TRL I+ + I +PVA EPV I Sbjct: 277 DTAYAAGGSVTGHHA--TRAGFAFKWQDEAVDTRLRYIEWSCAVSTI-SPVAVFEPVQIE 333 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ A+L N I+ L G++ + V +A ++IPK + + D Sbjct: 334 GTTVSRASLCNLTEIERLGV-------GKECTLS----VIKANKIIPKCIAV------KD 376 Query: 425 A-QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 A P CP+C ++ +G V CT C+A+ +++ FVS+ +I Sbjct: 377 AVGAVEIPKECPVCHHPTRIFVSKNSG--VKTLHCTNP-DCTAKNVKKFSRFVSKSGMDI 433 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GL Q + F + F + P DI+ L KI ++ GFG+ S N+ +I Sbjct: 434 DGLSVQTMLKFI---NEGFIKQFP-DIYHLPEHFD----KISSMEGFGEKSCMNMQTAIE 485 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K R++ IF+L I +G + + + + + FA + N + + Sbjct: 486 KSRHVHPVNLIFALCIPLIGTDAGKKIVN-AIGFDGFADRMRNAT--------DFVDIDG 536 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-Q 662 +G + +I+E+Y NP+N EAL+KE+ + + K V TG + Sbjct: 537 IGQEKSGSILEWYANPKNSAMFEALIKELDIEKVDIKDMSEGSLNGKTFVITGDVHDFAN 596 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + YV G V+ +S+KTD ++ D + SK +KA++LG+ I++E+ F+ + Sbjct: 597 RSEFKAYVESQGGKVTGSVSKKTDYLVNNDTESTSSKNKKAKELGIPIISEDTFIEMF 654 >gi|320537878|ref|ZP_08037793.1| DNA ligase, NAD-dependent [Treponema phagedenis F0421] gi|320145297|gb|EFW36998.1| DNA ligase, NAD-dependent [Treponema phagedenis F0421] Length = 648 Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 181/725 (24%), Positives = 317/725 (43%), Gaps = 111/725 (15%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 LE+ I YH D YY I DSE+DAL + +L E N + E + Sbjct: 10 LEKLIRYHQDLYYNKEAEIP-DSEFDAL----------WDELRALEPENELFFTVPKESS 58 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 K +H IP S EK N E + ++ F Q F ++ K+DG + ++Y Sbjct: 59 DGFPKASHIIPMGSQEKAANPEAFTAWALKM-PFTQ--------FLVQYKLDGASLELQY 109 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIP-TIPRVLSLNIPEIIE-----VRGEVYISKND 197 E+G+FV A RGDG G+D++A +R + + + + P + +RGEV ++K Sbjct: 110 ERGRFVRAVTRGDGKIGDDITANVRKMQGVVSELQGESAPAGAQPFSGGIRGEVLMTKE- 168 Query: 198 FLALNDEMIAVGRKPY---ANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 + +K Y AN RNAA+G+++R + + L + + E G Sbjct: 169 ----------IHKKFYADKANCRNAANGLMKRKDGSGSEHLLVICYDAVQGSPEKPFTGT 218 Query: 255 YEMLQKMRCLGFPVNNG-----VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK---- 305 ++ L + NG ++ N+ ++ + + IR +LPYDIDGLV K Sbjct: 219 APFSTELEKLAWLKRNGFSTVEIQVCNSIQEVIDWRAHVMDIRESLPYDIDGLVIKNNLI 278 Query: 306 -VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDI-QIGRTGILTPVARLEPVNI 363 D+ S R R P I+ KF+ ++A T L +++ + G T TP+A +PV + Sbjct: 279 DPDDVS-------RPR-PEKQIAFKFSLEEAITTLREVEWSESGAT--YTPIAITDPVRL 328 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + A L N + I + ++++G +V++ + GE+IPK+ ++ N Sbjct: 329 AGTTVKRANLANPNMITDM-----------NLKIGSKVVITKRGEIIPKIETLVENTDEC 377 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P P+ C C S + LN T +L + AC R++ +++ +I Sbjct: 378 TEIP--MPTVCGTCGSSL---LNEGT-RLFCPNA-----ACPKLIHHRIEKWIA--TLDI 424 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 G + F S + D++TL + + +I G++S ++ +++ Sbjct: 425 RDFGINLIQRLFDSN----KVNSIVDLYTL------TVEDLASIERMGEISAKKVHSALH 474 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 ++ ISLE FI I +G + L + N + D V Sbjct: 475 AKKEISLETFIAGFDIDGIGVTMVEKLTQAGF---------NTLDKLFEADEQKFSTVYQ 525 Query: 604 VGDIIAQAIVEFYQNPRN--ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 G+++AQ +V Q + +E + P E ++ + FTG L I Sbjct: 526 FGEVLAQNLVRGLQTLKAEMTALIEKGFIPIKPPAAPDE---NAPLHGMSFCFTGELTAI 582 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +R +A++ V + G V + +++ ++ ++ +K +KAQQLG I+ EE F LLQ Sbjct: 583 KRSEAEQLVKEKGGSVKSSVTKGLSYLVTNTPESGSAKNKKAQQLGTAIITEEAFFALLQ 642 Query: 720 QYNTT 724 + + T Sbjct: 643 KEHKT 647 >gi|238924576|ref|YP_002938092.1| DNA ligase, NAD-dependent [Eubacterium rectale ATCC 33656] gi|238876251|gb|ACR75958.1| DNA ligase, NAD-dependent [Eubacterium rectale ATCC 33656] Length = 656 Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 183/718 (25%), Positives = 316/718 (44%), Gaps = 87/718 (12%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG---- 73 + ++ L + ++ YY + I+ + E+DA+ F +L + E G Sbjct: 7 KDKIDELVESLNRASKAYYNGADEIMPNYEWDAM----------FDELTQLEKETGYIRH 56 Query: 74 --PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 P G E + H P LSL K +IE+L+K+ + W L Sbjct: 57 DSPTQNAGYEAEAG-NREPHEYPALSLAKTKSIEELKKWAGDM-PIW-----------LS 103 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 K+DG + + Y+ G+ V RG+G G +++ AI P+ + + VRGE Sbjct: 104 WKLDGLTLVLTYDGGRLVKILTRGNGTVGSNITFLQDAISGFPKEIPYKGHMV--VRGEA 161 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGK-TSEI 249 IS DF LND I + YANPRN ASG L + ++ R ++ F+ L +I Sbjct: 162 TISYTDFKLLND-TIEDDDEKYANPRNLASGTLNLDDVEEVKRRHVVFYAFTLVHIDDDI 220 Query: 250 FAKGQYEMLQKMRCLGFPV--NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + G + + + + F V A + + +++S R +P +DGLV D Sbjct: 221 ISWG--DRMSYLSDMKFNVVKREATDAAGLDEAVKRWTRDVESGRMDVP--VDGLVICYD 276 Query: 308 EFSLQKQ---LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + G A R + K+ ++ TRL I+ + I +PVA EPV I Sbjct: 277 DTAYAAGGSVTGHHA--TRAGFAFKWQDEAVDTRLRYIEWSCAVSTI-SPVAVFEPVQIE 333 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++ A+L N I+ L G++ + V +A ++IPK + + D Sbjct: 334 GTTVSRASLCNLTEIERLGV-------GKECTLS----VIKANKIIPKCIAV------KD 376 Query: 425 A-QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 A P CP+C ++ +G V CT C+A+ +++ FVS+ +I Sbjct: 377 AVGEVEIPKECPVCHHPTRIFVSKNSG--VKTLHCTNP-DCTAKNVKKFSRFVSKSGMDI 433 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GL Q + F + F + P DI+ L KI ++ GFG+ S N+ +I Sbjct: 434 DGLSVQTMLKFI---NEGFIKQFP-DIYHLPEHFD----KISSMEGFGEKSCMNMQTAIE 485 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 K R++ IF+L I +G + + + + + FA + N + + Sbjct: 486 KSRHVHPVNLIFALCIPLIGTDAGKKIVN-AIGFDGFADRMRNAT--------DFVDIDG 536 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI-Q 662 +G + +I+E+Y NP+N EAL+KE+ + + K V TG + Sbjct: 537 IGQEKSGSILEWYANPQNSTMFEALIKELDIEKVDIKDMSEGSLNGKTFVITGDVHDFAN 596 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLL 718 R + + YV G V+ +S+KTD ++ D + SK +KA++LG+ I++E+ F+ + Sbjct: 597 RSEFKAYVESQGGKVTGSVSKKTDYLVNNDTESTSSKNKKAKELGIPIISEDTFIEMF 654 >gi|282858246|ref|ZP_06267432.1| NAD-dependent DNA ligase domain protein [Prevotella bivia JCVIHMP010] gi|282588955|gb|EFB94074.1| NAD-dependent DNA ligase domain protein [Prevotella bivia JCVIHMP010] Length = 678 Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 187/734 (25%), Positives = 322/734 (43%), Gaps = 96/734 (13%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E K + +L +++ D YY + D E+DA R A+ ++ PN P Sbjct: 3 EDKHKIMEALVLQLNEASDAYYNGKGEAMTDFEWDAAFDRLKALEEELGEVL----PNSP 58 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEP 132 N + + L K H P LSL K + +L K+ I+ W Sbjct: 59 TNSVSAD-KLKGQKEEHEYPALSLAKTKSETELAKWAEERPIWLSW-------------- 103 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + + Y+ GK RG+GH G +++ AI I + N I +RGE Sbjct: 104 KLDGLTLVVTYDNGKLTKVVTRGNGHIGTNITHLAAAIDNILPTVKANGH--IVIRGEAV 161 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT-SEIF 250 IS DF N E + YANPRN ASG L + ++ R+L + L T EI Sbjct: 162 ISYADFEQFNLE----SEEEYANPRNLASGSLTLKDINEVKARHLRWIPFSLVHTDEEII 217 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQ------ANTFHGIVSYYN---EMKSIRSTLPYDIDG 301 + G + + + LGF N R+ A +++ + + + PY +DG Sbjct: 218 SWG--DRMAFLDKLGF--NTVERELITLPTAENIEKVIATWTLRVTDTTRKDKQPYPVDG 273 Query: 302 LVYKVD--EFSLQKQL-GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 LV D E++ + G A R + K+ ++ T L I+ T ++PVA Sbjct: 274 LVITYDDTEYAATGSVTGHHAT--RAGFAFKWQDESVETTLEYIEWSCA-TSTISPVAVF 330 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV + G + A+L N + L G D G +++V +A ++IPKV+ + Sbjct: 331 KPVELEGTTVKRASLCNISECERL--------GIGD--AGTKLMVIKANKIIPKVISVT- 379 Query: 419 NERHPDAQPFSFPSFCPICQ--SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 F+ P+ CP+C +++V T L CT C A+QL++ FV Sbjct: 380 ----ECLGSFTIPTTCPVCHQPTQIVESEASGTRTL----HCTNH-HCPAKQLKKFARFV 430 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 S++ NI+GL +Q + F + AD+F LQ + + ++ + GFG+ S Sbjct: 431 SKEGINIDGLSEQTVQKFIN----LGWVSEYADLFHLQEKAEA----LKYMEGFGEKSCD 482 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------- 589 NL +I K R + ++ +F+L I VG ++ L Y + + N+++ Sbjct: 483 NLLTAIEKSRKVEAKQLLFALSIPLVGKDVCTRLLSAYPLEELINKSRENMVSPTLQRSL 542 Query: 590 -----HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 NN++ S I +G + + V + Q+ N ++ LL+E++ S E Sbjct: 543 FEEPRPNNEEIFSTIDG--IGPEKSASFVGWMQDDSNYAQLQRLLQELTVSQTSSEPK-G 599 Query: 645 SEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKA 701 + + V TG + + R++ + Y+ G V+ +S+ T +I D + K +KA Sbjct: 600 NLCQGLTFVITGDVHHYKNRNELKAYIESEGGKVTGSVSKSTHYLINNDVKSTSGKNKKA 659 Query: 702 QQLGVKIMNEEQFL 715 ++L + I++E+ F+ Sbjct: 660 KELNIPILSEDDFM 673 >gi|291529755|emb|CBK95341.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Eubacterium rectale M104/1] Length = 709 Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 192/755 (25%), Positives = 324/755 (42%), Gaps = 107/755 (14%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED------PNGP 74 + L +++ + YY I+ + E+D + F LA+ E+ P+ P Sbjct: 7 MKELVNKLNEASNAYYNGKDEIMSNHEWDTM----------FDQLAQLEEETGIILPDSP 56 Query: 75 LNKIGGEM--NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 +K+G + L KV H P LSL+K +I + K ++ D + Sbjct: 57 TSKVGADEIGGNGLKKVRHEFPALSLDKTKDIYEFPKVFSK-----AASGDCVVMH---- 107 Query: 133 KIDGTMITIRYEK------GKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 K+DG + + Y+ G+ V A RG+G G D++ I IP + I Sbjct: 108 KLDGCTLCLTYDGSRNGGCGRLVQAVTRGNGEIGSDMTYQASYIEGIPMTIGFKGKLI-- 165 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246 VRGE ++ ++F +N + G + Y+NPRN A+ + P R + F L Sbjct: 166 VRGEALMTYSEFERINSNL-EEGEEEYSNPRNLANSTITMKEPGLKGRKVIFKAFKL-VY 223 Query: 247 SEIFAKGQYEM-------LQKMRCLGFPV----------NNGVRQANTFHGIVSYYNEMK 289 E A + E+ L + LGF V +N ++ I++ N Sbjct: 224 MEPAADDKIEVPATFFGALTLLERLGFGVVEHELARAYSSNPDVDSDLPDQIINVMNSFS 283 Query: 290 SIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM--ISHKFAEKQASTRLLDIDIQIG 347 TL Y +DGLV D++ L P + + K+A++ T L +I+ Sbjct: 284 DRVETLDYPVDGLVVASDDYKTADALPVTGHHPNRLTGFAFKWADECVETTLREIEWSPS 343 Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 RTG + PVA +PV + G +T A++HN +K L +RVGD++ V +A Sbjct: 344 RTGRINPVAVFDPVQLEGTTVTRASVHNVSIVKKL-----------RLRVGDKISVFKAN 392 Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 ++IP +D + S CP+C + + V CT C+ + Sbjct: 393 KIIP-CIDKNLTPGDELTYAESHACTCPVCGMETSPMITHSGDRDVEVEMCTNP-NCAVK 450 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527 Q+++ HF RD +I GL ++ L+ F + F I+ AD++ R T I + Sbjct: 451 QVKKFVHFCERDCMDIVGLSEKTLEKFIEK---GF-IKQLADLY----RLDTFERNIAAM 502 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYL-SYQNFAQEINN 586 GFG S N++ SI R + FI +LGI VG A+ K Y + + F ++ N Sbjct: 503 DGFGQKSYDNIWKSIQISRKTTFVPFIHALGIPMVGKGQAKLFDKAYKGNVKKFFNDVYN 562 Query: 587 ------------IIAHNNDDWLS--LIRVPLVGDIIAQAIVEFYQNPRNICAVEA--LLK 630 I + DW S L +P D++ + R C E LL+ Sbjct: 563 RKTFTDIDGIGEKIELSLWDWGSRYLGWIPFEKDLLDEM-------RRTSCNTEVYDLLR 615 Query: 631 EVSPSIGRHEKNVSSE--IENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDI 687 + I E NV+ + + K V TG++ + R + Q + +LG + +++KT Sbjct: 616 WIDVEI-PAEANVAGKDILSGKTFVITGSVNHFKNRAELQAKIEELGGKATGSVTKKTSY 674 Query: 688 IIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +I D + K +KA++LGV I++E++FL ++ + Sbjct: 675 LINNDVESTSGKNKKAKELGVPIISEDEFLEMIGE 709 >gi|255018737|ref|ZP_05290863.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL F2-515] Length = 223 Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 137/226 (60%), Gaps = 14/226 (6%) Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI--TRYLNFFVHG 242 IEVRGE ++ K F LN+ G+ +ANPRNAA+G LR+L+ T I +R L+ F++ Sbjct: 10 IEVRGEAFMPKRSFQKLNEIREEEGQMLFANPRNAAAGSLRQLD-TKIAASRNLDIFLYA 68 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + E+ + L+ + LG VN R ++ + +Y +E R+ L YDIDG+ Sbjct: 69 VADFGEMGVETHSAGLEMLETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGI 128 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V K++ Q+Q+G +SPRW I++KF ++ T+LLDI++ +GRTG++TP A LEPV Sbjct: 129 VLKLNNLEQQRQMGTTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVR 188 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGE 408 + G ++ A+LHNED I +DIR+GD VL+K+AG+ Sbjct: 189 VAGTTVSRASLHNEDLIT-----------EKDIRIGDTVLIKKAGD 223 >gi|315608256|ref|ZP_07883246.1| NAD-dependent DNA ligase LigA [Prevotella buccae ATCC 33574] gi|315250037|gb|EFU30036.1| NAD-dependent DNA ligase LigA [Prevotella buccae ATCC 33574] Length = 662 Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 181/717 (25%), Positives = 314/717 (43%), Gaps = 82/717 (11%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E R+++ + ++ D YY ++ D E+DAL R + + P+ P Sbjct: 3 EDKRQQMRQFVERLNAASDAYYNGQPELMTDYEWDALFDRLRQLEEETGETL----PDSP 58 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEP 132 K+ + ++ K H P LSL K E+L K+ I+ W Sbjct: 59 TAKVSAD-DVKGQKEEHEFPALSLAKTKRPEELVKWAEGRPIWLSW-------------- 103 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG + Y+ G+ RG+GH G +++ +AI +P + +I RGE Sbjct: 104 KLDGLTLVATYDGGRLTKVVTRGNGHIGTNITHLAQAINGLPARIKSAGHTVI--RGEAV 161 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT-SEIF 250 IS DF N E + YANPRN ASG L + +I R++ + L T EI Sbjct: 162 ISYEDFERFNME----SDEEYANPRNLASGSLTLKDVNEIKQRHIRWIPFTLVYTDEEID 217 Query: 251 AKGQYEMLQKMRCLGF-PVNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKV 306 A G+ + + GF PV + T +++ + E + R PY +DGLV Sbjct: 218 AWGK--RMDWLEANGFKPVERELIANPTLEEVETVIARWTEKVTHRIN-PYPVDGLVISY 274 Query: 307 DEFSLQKQLGERAR-SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 D+ + + R ++ K+ ++ A T L ++ T ++PVA PV + G Sbjct: 275 DDTAYAATGAVTGHHATRAGLAFKWQDEAAETELDHVEWSCA-TNTISPVAVFRPVELEG 333 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 + A+L N + L G G R+ V +A ++IPKV+ +I Sbjct: 334 TTVKRASLCNISECRRLGIGGS----------GTRLSVIKANKIIPKVIKVIET-----V 378 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 F P CP+C + ++ + CT AC A+QL++ FVS++A NI+G Sbjct: 379 GEFDIPGKCPVCCAPTEISISGMSD--TETLHCTND-ACPAKQLKKFTRFVSKEAMNIDG 435 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 + +Q L F + AD++ L+ Q+ ++ + GFG+ S N+ S+ K Sbjct: 436 ISEQTLAKFIN----LGWVGEYADLYHLREHQR----ELAGLEGFGERSAANIMASVEKS 487 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYY--LSYQNFAQEINNI--IAHNNDDWLSLIRV 601 R+ R +F+L I GA++ + L Y + A+ + N+ AH + Sbjct: 488 RDAEAHRLLFALSIPLCGADVCKRLLSAYPLADLLSTARTVENLDHFAH----------I 537 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 P +G + + + + ++ N V+ LL E+ S E ++ V TG + Sbjct: 538 PGIGPEKSASFINWNRSQANQQLVDHLLCEIRVS-QVSEVPQGNKCAGLTFVITGDVYHF 596 Query: 662 Q-RHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715 + R++ + Y+ G V+ +S T +I D + K +KA+ LG++I++E+ F+ Sbjct: 597 KNRNELKSYIESEGGKVAGSVSGATSFLINNDVESTSGKNKKAKLLGIEIISEDDFI 653 >gi|213421985|ref|ZP_03355051.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 186 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 85/203 (41%), Positives = 129/203 (63%), Gaps = 21/203 (10%) Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++NATLHN D I+ Sbjct: 1 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 60 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 L +R+GD+V+++RAG+VIP+VV+++++ER + +P FP+ CP+C S V Sbjct: 61 L-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDV 109 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R G+ V RCTGGL C AQ+ E LKHFVSR A +++G+G + +D + E Sbjct: 110 ER----VEGEAVT--RCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVERE--- 160 Query: 502 FSIRIPADIFTLQRRQQTSTTKI 524 + PAD+F L + T ++ Sbjct: 161 -YVHTPADLFRLTAGKLTGLDRM 182 >gi|42527046|ref|NP_972144.1| DNA ligase, NAD-dependent [Treponema denticola ATCC 35405] gi|81412203|sp|Q73MH0|DNLJ_TREDE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|41817470|gb|AAS12055.1| DNA ligase, NAD-dependent [Treponema denticola ATCC 35405] Length = 645 Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 173/720 (24%), Positives = 325/720 (45%), Gaps = 100/720 (13%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN- 76 K + LE+ I H D YY ++P I D+E+DAL A+ DP L Sbjct: 4 EKRILDLEKTIKKHQDLYYN-AQPEISDAEFDALWDELKAL-----------DPQNKLFF 51 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 + E K H IP S EK + + ++ F + + ++ K+DG Sbjct: 52 TVPLESTEGFAKSEHIIPMGSQEKAADPPSFEAWALKM-PFKE--------YIVQYKMDG 102 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + ++YE+G FV A RGDG G+D++ + + + + +++N G Y +K Sbjct: 103 ASLELQYEEGHFVRAVTRGDGKIGDDITENVLKMKGLIKDITVN-------AGPAYGTKP 155 Query: 197 DFLALNDEMIAVGR------KPYANPRNAASGILRRLNPTDITRYLNFFVH-----GLGK 245 + E+I + K AN RNAA+G++++ N ++ +LN F + +G+ Sbjct: 156 FSGGIRCEVIMLRSIHQKYFKDKANCRNAANGLMKKKN-GELCEHLNLFAYDAVQGSIGR 214 Query: 246 --TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 T + K + E L ++ GF V+ + ++ Y + IR +L YDIDGLV Sbjct: 215 PFTGDAPFKTESEKLVWLKKAGFNCVE-VKYCKSIAEVIEYRAHVMDIRPSLDYDIDGLV 273 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDI-QIGRTGILTPVARLEPVN 362 K D ++ + +RAR P I+ KF+ ++A T L +I+ + G T TP+A +EPV Sbjct: 274 IKND--TIDPEDMKRAR-PEKQIAFKFSLEEAVTVLKEIEWSESGAT--YTPIALIEPVR 328 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + G + A+L N + IK L ++++G RV+V + GE+IPK+ + E Sbjct: 329 LAGTTVKRASLANPNIIKAL-----------NLKIGSRVVVTKRGEIIPKIEALA--ENP 375 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P+ + +P C +C S + + ++C R++ ++S + Sbjct: 376 PNVKEIEYPDTCSVCGSPLTNE---------GTRLYCPNMSCPKLIHHRIEKWIS--VLD 424 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 I G + F+ + D++TL + + ++ G +S +Y ++ Sbjct: 425 IRDFGITLIKRLFE----MGRVNSITDLYTLTVEELAAIDRM------GKLSAEKVYKAL 474 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + ++ ISL FI I +G + L + + ++N ++ + D+ ++ + Sbjct: 475 HSKKEISLTEFIAGFDIEGIGETMVEKLEEAGFN------DLNELLGASEADFANVYQ-- 526 Query: 603 LVGDIIAQAIVEFYQNPRN--ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 G +++ +V ++ ++ ++ P + E V ++ FTG L Sbjct: 527 -FGQVLSHTLVTNLSILKDEMTGLIDKGYIKIKPPLTSEEGAV---LKGLSFCFTGELNT 582 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++R +A+ V + G V + + + ++ D+ SK +KAQ+LG I+ EE FL L+ Sbjct: 583 MKRAQAEALVKEKGGTVKSSVVKGLSYLVTNTPDSGSSKNKKAQELGTAIITEEAFLNLI 642 >gi|309800538|ref|ZP_07694688.1| DNA ligase [Streptococcus infantis SK1302] gi|308115831|gb|EFO53357.1| DNA ligase [Streptococcus infantis SK1302] Length = 315 Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 101/310 (32%), Positives = 167/310 (53%), Gaps = 15/310 (4%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 YY P + DSEYD L R + A PD P P +++GG++ K +H P Sbjct: 19 YYTSDNPSVSDSEYDRLYRELVELEKARPDQVL---PESPTHRVGGKILDGFEKYSHQYP 75 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL+ ++ E+L F R+ +K+ + + + E KIDG I++ YE+G FV A R Sbjct: 76 LYSLQDAFSREELDAFDARV-----RKELDDVTYICELKIDGLSISLTYEQGIFVAGATR 130 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKNDFLALNDEMIAVGRKP 212 GDG GE+++ ++ + IP L++PE ++ VRGE Y+ + F +N G Sbjct: 131 GDGSIGENITENLKRVKDIP----LSLPEKLDITVRGECYMPRVSFDQVNQSRQENGEPE 186 Query: 213 YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 +ANPRNAA+G LR+L+ T + N + S Q ++L+ + LGF VN Sbjct: 187 FANPRNAAAGTLRQLD-TAVVAKRNLATFLYQEASPSTRDSQEKVLKHLEQLGFVVNQRR 245 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 A++ + ++ E+ R LPYDIDG+V K+++ + Q+QLG ++P+W +++KF Sbjct: 246 LLAHSMDEVWTFIQEIGRERDQLPYDIDGVVIKINDLAGQEQLGFTVKAPKWAVAYKFPA 305 Query: 333 KQASTRLLDI 342 ++ +LL + Sbjct: 306 EEKEAKLLSV 315 >gi|313618396|gb|EFR90422.1| DNA ligase [Listeria innocua FSL S4-378] Length = 303 Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 112/323 (34%), Positives = 171/323 (52%), Gaps = 40/323 (12%) Query: 402 LVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGG 461 L+K+AG++IP+V+ I ER+ +PF P CP C S +VR L + A RC Sbjct: 1 LIKKAGDIIPEVIKSITEERNGSEKPFHMPKNCPTCDSELVR-LEEEV-----ALRCINP 54 Query: 462 LACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTST 521 C AQ E L HFVSR+A NI+GLG++ + F I+ AD+F L + + Sbjct: 55 -KCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLF----SMHLIKDVADLFFLSKEKLLEL 109 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA 581 ++ G+ SVTNL SI + SLE+ +F LGIRHVGA+ A+SLA ++ + N Sbjct: 110 ERM------GEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKSLAVHFETMDNLK 163 Query: 582 QEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS------ 635 + ND +G+ +A +IV ++ N V LL+E+ + Sbjct: 164 IADKETLTSIND----------IGEKMADSIVTYFANEE----VHDLLEELKRAGVNMTY 209 Query: 636 IGRHEKNVSSE---IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 G +N+S E K +V TG L+K+ R+ A+ + LG VS +S+KTD+++ G Sbjct: 210 TGPKLENMSEEELVFAGKTVVLTGKLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGS 269 Query: 693 NPGSKLEKAQQLGVKIMNEEQFL 715 + GSKL KA++L + I +EE + Sbjct: 270 DAGSKLAKAEELAIPIWSEEDLI 292 >gi|303237245|ref|ZP_07323815.1| NAD-dependent DNA ligase domain protein [Prevotella disiens FB035-09AN] gi|302482632|gb|EFL45657.1| NAD-dependent DNA ligase domain protein [Prevotella disiens FB035-09AN] Length = 655 Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 194/707 (27%), Positives = 305/707 (43%), Gaps = 100/707 (14%) Query: 33 DCYYQYSKPIILDSEYDA----LKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 + YY I+ D E+DA LK + PD S N + I GE K Sbjct: 21 NTYYNGQNEIMSDHEWDAAFDELKHLEEETGTILPD---SPTANVSADSIAGE------K 71 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 H LSL K DL K+ I+ W K+DG + + Y+KG Sbjct: 72 EEHEFAALSLAKTKKTTDLLKWAEEKPIWISW--------------KLDGLTLVVTYDKG 117 Query: 147 KFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE-----VRGEVYISKNDFLAL 201 K RG+GH G +++ AI I +P I + +RGE IS +DF Sbjct: 118 KLSKVVTRGNGHIGTNITHLAPAIAGI-------LPTITDKGHVVIRGEAIISYSDFNVF 170 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 N E + YANPRN ASG L N T R+L++ L + E F +M Sbjct: 171 NMET----GEEYANPRNLASGSLTLKNIETLKERHLHWIPFTLVYSDEPFNSWGAQM-DY 225 Query: 261 MRCLGF-PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ---LG 316 + LGF V + I + ++ Y +DGLV D+ + G Sbjct: 226 LTKLGFKTVEHEAINVPNIENIDATIENWTHKLNSFDYPVDGLVICFDDIAYATTGSVTG 285 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 A R + K+ ++ A T L I+ + I +PVA +PV + G + A+L N Sbjct: 286 HHAT--RGGYAFKWQDESAETELEYIEWSCAASTI-SPVAVFKPVELEGTTVKRASLCNI 342 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 + L GK G ++ V +A ++IPKV++++ E S P+ CP+ Sbjct: 343 SECERLGIGGK----------GTKISVIKANKIIPKVIEVLQTE-----GKLSIPTECPV 387 Query: 437 CQS--RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 C+S VV + +T L CT C+A++L++ FVS++ NI+GL +Q L F Sbjct: 388 CKSPTEVVVSSSSETKTL----HCTNP-NCAAKELKKFVRFVSKEGVNIDGLSEQTLQKF 442 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 I ADIF L + + KI + GFGD SV NL +I+K + + + + Sbjct: 443 IN----LGWINQYADIFHLH--EHANDLKI--MEGFGDKSVLNLLRAIDKAKIVEAKNLL 494 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 FSL I VG ++ L LS F + I + A D + +G + + + Sbjct: 495 FSLSIPLVGQDVCSRL----LSAYPFNELI--MKARLATDSAEFSNIAGIGPEKSASFIA 548 Query: 615 FYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYV 670 + Q NI + LL E+ P + K + + V TG + + R + + Y+ Sbjct: 549 WIQAEENIKRLNNLLVELKITQPVV----KEIGTRCNGLTFVVTGDVHHYKNRSELKAYI 604 Query: 671 TQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715 G V+ +S+ T+ +I D + K +KA+Q + I++E++F+ Sbjct: 605 ESQGGKVTGSVSKSTNYLINNDVNSTSEKNKKARQFEIPIISEDEFV 651 >gi|281358582|ref|ZP_06245061.1| DNA ligase (NAD(+)) [Victivallis vadensis ATCC BAA-548] gi|281314930|gb|EFA98964.1| DNA ligase (NAD(+)) [Victivallis vadensis ATCC BAA-548] Length = 626 Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 190/699 (27%), Positives = 309/699 (44%), Gaps = 118/699 (16%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 I YH+ Y+ +P I D+ YD L R A+ PD P G Sbjct: 20 IEYHNRRYWDEGEPEIPDARYDELIR---ALQKLEPDHELVTRVYAPAVAGSG------- 69 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 KV H P LSL+K +++E++ ++ + F + +D+ +EPK DG I+ ++ G+ Sbjct: 70 KVRHLRPMLSLDKAYSLEEVLEWAKK---FARSEDEE---LLVEPKYDG--ISANFD-GR 120 Query: 148 FVYAALRGDGHSGEDVSACIRAIP--TIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEM 205 + + RGDG GE+++ + + T ++ P VRGE+ I +DF L + Sbjct: 121 VL--STRGDGELGENITDKLPLVELETAGHTGKVDRP----VRGELVIRDDDFKTLYSHI 174 Query: 206 IAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLG 265 G Y N RNA +GI+ GL + +E+ +G L + Sbjct: 175 RKKGGGVYKNSRNAVAGIM-----------------GLKEIAEMELQGAKITLVDYNLVS 217 Query: 266 FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 F V + + + + E++ LPY DG+V K+ + + LG A PR Sbjct: 218 FRVK--------YSELAAKWEELRRQLEALPYPQDGIVIKLADSAYSASLGNTAHHPRGE 269 Query: 326 ISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDAS 385 I+ KF + TRL+ ++ G+ LTPVA LEPV I G I ATLHN I L Sbjct: 270 IAFKFTNIRRETRLIGVEWSFGKN-CLTPVAELEPVEISGTTIRRATLHNIQNILEL--- 325 Query: 386 GKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE--RHPDAQPFSFPSFCPICQSRVVR 443 +++GD V V+RAG+VIP +V E R P CP C +++VR Sbjct: 326 --------GVQIGDTVTVERAGDVIPYIVSSTPGEERRSP------LIEDCPSCGAKLVR 371 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 C C QL+RL V IE LG+ L ++ Sbjct: 372 R---------GPELCCPNPECPETQLQRLAAAVRN--LGIERLGEPTLRKLMENS----G 416 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 +R D+F L + + + GF S NL + I K R ++ + + +L I ++G Sbjct: 417 VRHLGDLFEL------TAMDLLRLDGFAAKSAANLIEEIQKARIVNDYQLLAALNIPNIG 470 Query: 564 AEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 A + AK S+ +FA + +++ LS I P +G A+A+V + Sbjct: 471 ANV----AKVIFSHTDFAG-----LRRMSEEELSAI--PGIGPERAKALVS------ELA 513 Query: 624 AVEALLKEVSPSIGR-HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 A L E+ ++ H ++EI + FTG + + +R ++ T G + ++ Sbjct: 514 AQSEYLDELLGAVRLIHAAAPAAEIPT--VCFTGKMPE-KRSYYEKLATAHGYRSADDVT 570 Query: 683 RKTDIIIVGD---NPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ D N G KL+KA +LGVK+++ ++FL +L Sbjct: 571 SSLSLLVAADPAENSG-KLKKAARLGVKVVSLDEFLSML 608 >gi|288925794|ref|ZP_06419725.1| DNA ligase [Prevotella buccae D17] gi|288337449|gb|EFC75804.1| DNA ligase [Prevotella buccae D17] Length = 654 Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 179/699 (25%), Positives = 306/699 (43%), Gaps = 82/699 (11%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92 D YY ++ D E+DAL R + + P+ P K+ + ++ K H Sbjct: 13 DAYYNGQPELMTDYEWDALFDRLRQLEEETGETL----PDSPTAKVSAD-DVKGQKEEHE 67 Query: 93 IPTLSLEKIWNIEDLRKFITR--IYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 P LSL K E+L K+ I+ W K+DG + Y+ G+ Sbjct: 68 FPALSLAKTKRPEELVKWAEGRPIWLSW--------------KLDGLTLVATYDGGRLTK 113 Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 RG+GH G +++ +AI +P + +I RGE IS DF N E Sbjct: 114 VVTRGNGHIGTNITHLAQAINGLPARIKSAGHTVI--RGEAVISYEDFERFNME----SD 167 Query: 211 KPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT-SEIFAKGQYEMLQKMRCLGF-P 267 + YANPRN ASG L + +I R++ + L T EI A G+ + + GF P Sbjct: 168 EEYANPRNLASGSLTLKDVNEIKQRHIRWIPFTLVYTDEEIDAWGK--RMDWLEANGFKP 225 Query: 268 VNNGVRQANTFH---GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR-SPR 323 V + T +++ + E + R PY +DGLV D+ + + R Sbjct: 226 VERELIANPTLEEVETVIARWTEKVTHRIN-PYPVDGLVISYDDTAYAATGAVTGHHATR 284 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 ++ K+ ++ A T L ++ T ++PVA PV + G + A+L N + L Sbjct: 285 AGLAFKWQDEAAETELDHVEWSCA-TNTISPVAVFRPVELEGTTVKRASLCNISECRRLG 343 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 G G R+ V +A ++IPKV+ +I F P CP+C + Sbjct: 344 IGGS----------GTRLSVIKANKIIPKVIKVIET-----VGEFDIPGKCPVCCAPTEI 388 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 ++ + CT AC A+QL++ FVS++A NI+G+ +Q L F Sbjct: 389 SISGMSD--TETLHCTND-ACPAKQLKKFTRFVSKEAMNIDGISEQTLAKFIN----LGW 441 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVG 563 + AD++ L+ Q+ ++ + GFG+ S N+ S+ K R+ R +F+L I G Sbjct: 442 VGEYADLYHLREHQR----ELAGLEGFGERSAANIMASVEKSRDAEAHRLLFALSIPLCG 497 Query: 564 AEIARSLAKYY--LSYQNFAQEINNI--IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 A++ + L Y + A+ + N+ AH +P +G + + + + ++ Sbjct: 498 ADVCKRLLSAYPLADLLSTARTVENLDHFAH----------IPGIGPEKSASFINWNRSQ 547 Query: 620 RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVS 678 N V+ LL E+ S E ++ V TG + + R++ + Y+ G V+ Sbjct: 548 ANQQLVDHLLCEIRVS-QVSEAPQGNKCAGLTFVITGDVYHFKNRNELKSYIESEGGKVA 606 Query: 679 AILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715 +S T +I D + K +KA+ LG++I++E+ F+ Sbjct: 607 GSVSGATSFLINNDVKSTSGKNKKAKLLGIEIISEDDFI 645 >gi|212374934|pdb|3BAC|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+ Dependent Dna Ligase Length = 270 Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 98/264 (37%), Positives = 153/264 (57%), Gaps = 18/264 (6%) Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLEPKIDGTMITI 141 ++ H IP LSL+ ++ + F+ RI +D I F EPK+DG ++I Sbjct: 9 QIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCEPKLDGLAVSI 61 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLA 200 Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGEV++ F Sbjct: 62 LYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGFER 121 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQYEM 257 LN + K +ANPRNAA+G LR+L+P +IT R L +G+G + Y Sbjct: 122 LNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEGVGLPTTHYAR 180 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ +LQ +LG Sbjct: 181 LQWLKSIGIPVNPEIRLCNGADEVLDFYQDIQNKRSSLGYDIDGTVLKINDIALQNELGF 240 Query: 318 RARSPRWMISHKFAEKQASTRLLD 341 +++PRW I++KF ++ T L D Sbjct: 241 ISKAPRWAIAYKFPAQEELTLLND 264 >gi|256062935|ref|XP_002570360.1| DNA ligase NAD-dependent [Schistosoma mansoni] gi|227294819|emb|CAY18406.1| DNA ligase, NAD-dependent, putative [Schistosoma mansoni] Length = 311 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 98/216 (45%), Positives = 136/216 (62%), Gaps = 21/216 (9%) Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V KVD+ LQ+ LG AR+PRW +++KF ++ASTRL I+ Q+GRTG LTPVARL PV Sbjct: 1 MVVKVDDRRLQQDLGFVARAPRWAVAYKFPAQEASTRLEAIEWQVGRTGALTPVARLAPV 60 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 ++GG +++NATLHN D + L D+R GD V++ RAG+VIPKV+ + ++ Sbjct: 61 SVGGVVVSNATLHNIDEVHRL-----------DLRAGDTVVIYRAGDVIPKVMRRLDDDG 109 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 H P + P CP+C S VVR G++VA RC+ GL C AQ+ E L+HF SR A Sbjct: 110 HAARAPVALPDACPVCASAVVR----PEGEVVA--RCSAGLFCPAQRKEALRHFASRRAM 163 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQ 517 +IEGLG++ +D A + PADI+ L Q Sbjct: 164 DIEGLGEKWVDLMVD----AGLLHTPADIYRLSAEQ 195 >gi|242279308|ref|YP_002991437.1| DNA ligase (NAD(+)) [Desulfovibrio salexigens DSM 2638] gi|242122202|gb|ACS79898.1| DNA ligase (NAD(+)) [Desulfovibrio salexigens DSM 2638] Length = 614 Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 175/713 (24%), Positives = 306/713 (42%), Gaps = 126/713 (17%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNK 77 KE+ L + H++ Y + P I D+ YD L + R DP P L Sbjct: 6 KEIKDLVALLEKHNEAYRR-GMPTISDARYDELTEQL-----------RDLDPENPFLTN 53 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + E +V H P LS EK + E+L +F++R+ + + + + + PK+DG Sbjct: 54 VEPENFSEKVEVRHPRPMLSTEKAYTTEELERFVSRVEKEAKAMGIKEVTYRITPKLDG- 112 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIR--AIPTIPRVLSLNIPEIIEVRGEVYISK 195 + R + F A RG+G G ++S+ + R + GE+ S Sbjct: 113 -LAARDDGKVF---ATRGNGEVGYEISSAFTKGVVAVGGRGQGV---------GEIVCSL 159 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 F DE +A + +PRN GI+ TS+ + Sbjct: 160 EYF----DEHLA---NSFEHPRNMVVGII---------------------TSDKVNEASK 191 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK-SIRSTLPYDIDGLVYKVDEFSLQKQ 314 + LQ P + ++ +VS E+ + Y +DG+V +V + +LQ++ Sbjct: 192 QALQDEAVRFVPYSTLPKKVVNGEELVSRVWEITDELWEAADYPLDGMVAEVTDTALQER 251 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A RW I+ K + A T + I Q+GR G +TPV ++PV++ GA I N T H Sbjct: 252 LGATAHHYRWQIAIKKKGESAVTEVEGIRWQVGRMGAVTPVMEVKPVSVSGATIRNVTAH 311 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N ++ + I +G + + R+GEVIPK+ ++I AQ P+ C Sbjct: 312 NAGMLR-----------DQSIGIGATIRIIRSGEVIPKLEEVI-----KPAQEVELPAEC 355 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C + + + +C +C A+ +RL+++ + N + GK+ + Sbjct: 356 PSCGAELFWQND--------FLKCP-DFSCPARVEQRLEYWF-KTLGNADWFGKKTIAKL 405 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS--INKRRNISLER 552 K+ + ++T+ LGFG V TNL ++ I+K + R Sbjct: 406 VKAGHNSLE-----SVYTMAEDDFQK-------LGFGPVQSTNLAEALYISKTKETDDWR 453 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+ + GI +G +R L Y+ ++ +++ + LI + GDI + ++ Sbjct: 454 FLAAFGIPDLGKADSRKLLGYF--------KLEDVVNVKQE---QLIELHGFGDITSHSV 502 Query: 613 VEFYQNPRNICAVEALLKEV---------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 E I A++ + + +P + E ++ S I K +VFTG +++ R Sbjct: 503 TE------GIAAIKETILHMLEFDFNLRRTPLVSETE-SMESPITGKGIVFTGKMEQGSR 555 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFL 715 Q +LGA V ++ KTD ++ G G+ K+E A+ GV+IM E +F+ Sbjct: 556 EDMQAMARRLGAKVQTSVTGKTDFLVCGSKVGAKKIESAKAKGVEIMKESEFM 608 >gi|167461915|ref|ZP_02327004.1| NAD-dependent DNA ligase LigA [Paenibacillus larvae subsp. larvae BRL-230010] Length = 363 Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 114/363 (31%), Positives = 184/363 (50%), Gaps = 23/363 (6%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L +EI+ H+ YY +P I D EYDAL R + + + PN P ++GG++ Sbjct: 11 LIEEINKHNYHYYTLDEPTITDQEYDALYDRLLKLEKE----SGTVLPNSPTLRVGGDIL 66 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF---WQKKDDNSIF----FTLEPKIDG 136 H SL+K +IE L+ + R+ + + K+ ++ F +E K DG Sbjct: 67 KGFEPHRHRSRLWSLDKAQSIEVLKNWHNRVQKLVNDYNSKNPSTPLPEPSFAVELKFDG 126 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE---IIEVRGEVYI 193 I + Y++G V A+ RG+G GE + A ++ I ++P L IP +IEV+GE + Sbjct: 127 LTINLTYDQGNLVQASTRGNGVVGEGILAQVKTIKSVP----LEIPYKEGLIEVQGEGMM 182 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAK 252 L++ D+ +P N RNAA+G LR LNP R L F + +G + Sbjct: 183 ----LLSVLDQYNQTAAEPLKNARNAAAGALRNLNPKVTAERRLTAFFYNVGFSDRKQFM 238 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 EM+ ++ F VN V+ NT + +++ R + IDG V KV + + Sbjct: 239 NHQEMIAFLKENHFKVNPYVKYFNTIDEVFEEMKKLEQERHDFDFLIDGAVIKVTDIRTR 298 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 + LG + PRW I++KF ++ +T L + ++GRTG +TPVA++EPV + G + N T Sbjct: 299 EVLGYTEKFPRWAIAYKFEAEEVTTVLEGVSWEVGRTGKITPVAKVEPVELAGVTVQNCT 358 Query: 373 LHN 375 L+N Sbjct: 359 LNN 361 >gi|303252068|ref|ZP_07338237.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649050|gb|EFL79237.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 253 Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 101/270 (37%), Positives = 155/270 (57%), Gaps = 31/270 (11%) Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ + E + PAD+F L Sbjct: 5 AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMECE----LVHTPADLFKL 60 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 T+ ++E + G+ S N +SI K +N +L RF+F+LGIR VG A++LA + Sbjct: 61 D---HTTLMRLERM---GEKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNLANH 114 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 + +N+ A + L V VG+++A IV F+Q P N+ VE L+ Sbjct: 115 F----------HNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQEPHNVAVVEDLI---- 160 Query: 634 PSIGRHEKNV------SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 S G H ++V + ++ K +V TGTL ++ R +A+ + G VS +S KTD Sbjct: 161 -SQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSFGCKVSGSVSSKTDY 219 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 +I G+ GSKL KAQ+LGVK++ E++F+ L Sbjct: 220 LIAGEKAGSKLAKAQELGVKVLTEQEFIAL 249 >gi|82701055|ref|YP_418155.1| putative NAD-dependent DNA ligase [Pseudomonas phage EL] gi|82657960|emb|CAG27216.1| putative NAD-dependent DNA ligase [Pseudomonas phage EL] Length = 656 Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 187/711 (26%), Positives = 315/711 (44%), Gaps = 112/711 (15%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG---PLNKIGG 80 L ++++YH Y+ ++ I D YD L++ + + +P++A D P+++ G Sbjct: 13 LHEQLTYHAHLYFVENRNEISDEAYDVLEQELNELYDRYPEIAAKFDFYNRPVPIHEPSG 72 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 E ++ V P LSL+K ++E+ F+ + D + FF E K+DG + Sbjct: 73 E---TIQPVRFEEPMLSLKKALSVEEADTFLLKF-------PDGTNFF-YEEKLDGLALE 121 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAI--PTIPRVLSLNIPEI-------IEVRGEV 191 + YE+G+ V + RG G GEDV+ I T+PR L +P+ + +RGE Sbjct: 122 LVYEQGQLVSMSTRGSGLVGEDVTHSIVLFDEATLPRTLR-TLPDRHKPQGDRLVIRGEG 180 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT---DITRYLNFFVHGLGKTSE 248 YIS F +LN+ G++ +NPRNA SG +R L DI L F + + Sbjct: 181 YISLERFDSLNE---TGGKR--SNPRNAVSGWVRSLPQNQREDIRGTLYFAAYY--ASDR 233 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + K E+ Q + LGF GV ++ + I N +IR +DG+V KVD+ Sbjct: 234 LGTKAYSELRQVLLGLGF----GVPESRDW--IAVSENRRGNIRP-----VDGIVIKVDK 282 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 F Q G ++ P W I++KF ++A ++ R G + PV + PV I G + Sbjct: 283 FKEQDASGNGSKFPHWAIAYKFPAEEALAQVEGCIWNTSRFGRVVPVVQYTPVTIQGVIC 342 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +A+L N G M G + +GDR+++ R +VIP++ + E + Sbjct: 343 QSASLDN---------YGSFMDLG--LSIGDRIVITRNNDVIPRLNRV---EECGEGDLL 388 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 P+ CP C S + + + +LV C C AQ + R + +++GLG Sbjct: 389 EAPTSCPSCDSLLEVVVGRDSSELV----CNNVAECPAQIVMRCVTTFDKFGLDVDGLGP 444 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTL------QRRQQTSTTKIENILGFGDVSVTNLYDSI 542 ++ + ++ PADI TL Q T+ +E +L Sbjct: 445 VKVSELVEKG----WVKQPADILTLPEGIKDQCLTPTTRRGLERVL-------------- 486 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + + L RF+ +LGI +G +A+ LA N E + N +L +R Sbjct: 487 --QEPVPLHRFLKALGIPDIGITLAKRLA-------NAIPEGKIEESLTNPKFLQSVRGV 537 Query: 603 LVGDIIAQAIVEFYQNP---RNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 VG IA +V + +P N A++ LL + ++ + K+ TG + Sbjct: 538 SVG--IAYRVVNAFDSPVFKDNFHALKGLLT---------LQYTGTQDDCIKVCITGNIG 586 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709 R + + G +S L++ +IVGD PG SKL A + G+ ++ Sbjct: 587 P-SRGELCNLFAKEGIELSDRLTQDCAFVIVGDRPGKSKLLIATESGIPML 636 >gi|15828872|ref|NP_326232.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) (fragment) [Mycoplasma pulmonis UAB CTIP] gi|14089815|emb|CAC13574.1| DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) (FRAGMENT) [Mycoplasma pulmonis] Length = 367 Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 120/400 (30%), Positives = 220/400 (55%), Gaps = 39/400 (9%) Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 K+++ SL LG+ ++ I++KF +K T + DI + +G+TG++T A+L+ V + Sbjct: 3 KLNDLSLYDLLGKTSKFFHHSIAYKFRKKIVMTTIQDIFVTVGKTGLITYNAKLQEVILN 62 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G+ I ATLHN +YIK + I +GD+V +++AGE+IP+VV +VN ++ + Sbjct: 63 GSKINAATLHNYEYIKNI-----------KINIGDKVYIEKAGEIIPRVVK-LVNPKN-N 109 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 FS CP C++++ N ++ L C +++++LK+FVS+D I+ Sbjct: 110 HNYFSPIEICPSCKNKLSWSKN-------MLNQFCLNLDCIEKKIQKLKYFVSKDGLEIQ 162 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 LG ++++ FF ++ DI+ L + K+E F + SV L I + Sbjct: 163 ELGGKKIELFF----AKGWVKKIEDIYNL-KNNYDDLLKLEK---FQEHSVNVLLHKIEE 214 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + + + I +LGI+++G ++A+SL K + ++N + + +++ N D+ L + Sbjct: 215 SKQVYTWKLIAALGIKNIGKKLAKSLVK--IIFENDQKNLLSLLDFNYDE---LEKYDEF 269 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV--SSEIENKKLVFTGTLQKIQ 662 G + +++ EF+ N N ++ L E + + EK + S+++ENK + TGTL+K Sbjct: 270 GSVKIESLKEFFANDENKNLIK-FLSENGFEV-KLEKEIIQSTKLENKTFLITGTLEK-P 326 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 R + + Q G ++S+ +S+K D +IVG NPGSK EK Q Sbjct: 327 RDFYKNLIVQNGGLISSSISKKLDYLIVGQNPGSK-EKKQ 365 >gi|95930744|ref|ZP_01313477.1| DNA ligase (NAD+) [Desulfuromonas acetoxidans DSM 684] gi|95133224|gb|EAT14890.1| DNA ligase (NAD+) [Desulfuromonas acetoxidans DSM 684] Length = 690 Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 175/704 (24%), Positives = 316/704 (44%), Gaps = 122/704 (17%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKIGGEMNLSLFKVTH 91 + +Y+ +P+I D +YD + A +L ++ P+ P L+ + E + V Sbjct: 80 NSFYRDGQPLISDHDYDHI---------ALAEL-KTRQPSHPFLHTVEPEPKFTGKTVEL 129 Query: 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQK--KDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 LS EK + ++L ++ RI++ + +D + F + PK+DG ++ G + Sbjct: 130 PARMLSTEKAYTDKELSDWLKRIHKAANEIGRDPAGLQFRITPKLDGFAA---FDDGDRL 186 Query: 150 YAALRGDGHSGEDVS-ACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 Y RGDG G D++ A R + V++ N P + GE+ + ++ F A +A Sbjct: 187 YT--RGDGRRGTDITRAFERGL-----VVANNQPRGLGA-GEIVVQRSYFAA----NLA- 233 Query: 209 GRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266 + Y NPRN + +++ L P LG + +F + Sbjct: 234 --QDYENPRNFQASVVKEKALEPA--------VEQALGNQAVVF---------------Y 268 Query: 267 PVNN---GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 P + VR+++ I S + +R++L YD+DG+V ++ + L+ +G R Sbjct: 269 PFSTLPYRVRRSDDL--IDSVAALSRELRASLDYDMDGIVIEITDDELKTYMGATRHHHR 326 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W I++K +++A ++L + Q R+G + PVA +EP + GALI AT H+ + Sbjct: 327 WQIAYKQNQEKAEVKVLQVVPQTSRSGRVNPVAEVEPTRLSGALIQRATAHHYGMV---- 382 Query: 384 ASGKVMRGGRDIRVGDRVLVK--RAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 RD +G +++ R+GEVIPK++D++ A P+ CP C + + Sbjct: 383 ---------RDKGIGPDAVIELTRSGEVIPKIIDVV------KAVEPQIPASCPSCDTEL 427 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 D + C C AQ ++HF R NI+G G ++ + + Sbjct: 428 FWDSD--------YLYCPNNTGCPAQISHTIEHFF-RTLGNIDGFGPATIEKLYTN---- 474 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE--RFIFSLGI 559 +IR ++ LQ Q +GFG NL + + + R+ +E RF+ + G+ Sbjct: 475 -NIRTIDAVYGLQADQLEG-------MGFGPKQSENLVNELQRSRHEVIEDWRFLAAFGV 526 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 +G L ++ + F I+A + + A+ +V+ + Sbjct: 527 FRMGGGNCERLLGHHRLEEIFELSEEQIVA-----------IEGFAERTAEVVVKGFARI 575 Query: 620 RNIC-AVEALLKEV--SPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 R + ++AL + +P + + + + + I K LVFTGT+ R + +LGA Sbjct: 576 RPLFDKLQALGFNLQRTPLVSELQASGALNPIAGKLLVFTGTMTHGSRDDMKAEAKKLGA 635 Query: 676 VVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 V A ++ KTD ++ GD G SKL A GV+I+ EEQ+L L+ Sbjct: 636 KVGASVTGKTDYLVTGDKVGASKLNAATSKGVEILTEEQYLKLI 679 >gi|302844550|ref|XP_002953815.1| hypothetical protein VOLCADRAFT_118457 [Volvox carteri f. nagariensis] gi|300260923|gb|EFJ45139.1| hypothetical protein VOLCADRAFT_118457 [Volvox carteri f. nagariensis] Length = 1842 Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 115/383 (30%), Positives = 173/383 (45%), Gaps = 81/383 (21%) Query: 125 SIFFTLEPKIDGTMITIRYEK---GKFVY--AALRGDG--HSGEDVSACIRAIP------ 171 S + +EPK+DG + + Y + G ++ AA RGDG G ++A I P Sbjct: 246 SYRWVMEPKVDGLAVRVLYGRTAHGTYILKEAATRGDGWLGRGSHIAASISPSPAGAANH 305 Query: 172 -------------TIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 + P PE +E RGEV+ D +N E AVG+ P+AN RN Sbjct: 306 DGDGNEWENGSAASAP-AADCGAPEWVEARGEVFCRTADLELVNREQEAVGQPPFANTRN 364 Query: 219 AASGILRRLNPTDITRY-LNFFVH------------------------------------ 241 AASG +R L+P + R L+F + Sbjct: 365 AASGAVRLLDPAECRRRRLSFVAYAALAPSPPPSPSQQRRPEPATTTPPPSSSSPPPYPS 424 Query: 242 -------GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 G + Q++ LQ ++ GF V+ R ++ ++ E R+T Sbjct: 425 SPSNRSSGNAAAVQPLHPSQWDTLQWLKSAGFSVSPDNRLCDSREEVLGAVEEWMEKRAT 484 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YD DG V K+D+ +L LG PRW ++ KF ++A TR+ +++ +GR G +TP Sbjct: 485 LGYDADGAVIKLDDTTLYDILGTAGSDPRWAVAWKFPGEEAVTRVTGVELTVGRQGQITP 544 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VA L PV +GG I A+LHN + L G + GD V+V+R+G+VIP+VV Sbjct: 545 VALLSPVVVGGVTIRRASLHNLGLARAL---------GLHL-PGDAVVVRRSGDVIPQVV 594 Query: 415 DIIVNERHPDAQPFSFPSFCPIC 437 ++ R P A+ + PS CP C Sbjct: 595 RVLPELRPPGAELWQPPSACPAC 617 >gi|218777900|ref|YP_002429218.1| DNA ligase (NAD(+)) [Desulfatibacillum alkenivorans AK-01] gi|254781309|sp|B8FKD5|DNLJ_DESAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218759284|gb|ACL01750.1| DNA ligase (NAD(+)) [Desulfatibacillum alkenivorans AK-01] Length = 631 Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 180/706 (25%), Positives = 309/706 (43%), Gaps = 138/706 (19%) Query: 36 YQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPT 95 Y+ KP+I D+ YD L R IA PD +G L+ + E +V H P Sbjct: 28 YRAGKPMISDAHYDLLVERLREIA---PD-------HGFLSAVEAETFADKREVRHPAPM 77 Query: 96 LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRG 155 LS EK ++ + L +F+ R+Y+ + + F + PK+DG + R + G+ + A RG Sbjct: 78 LSTEKAYDKQSLERFVERVYKEAAQIGVTDVLFQVTPKLDG--LAAR-DDGQIL--ATRG 132 Query: 156 DGHSGEDVSACIR--AIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 +G++G D++ + IP R L L EI+ V+ Y +N L D + Sbjct: 133 NGYAGYDITNALEKGVIPQGGRGLGLG--EIVAVQS--YFQEN----LADR--------F 176 Query: 214 ANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 +PRN GI+ +S++ + L+ + P + Sbjct: 177 EHPRNMVVGII---------------------SSDVLNISAKQALEDKQVHFVPYATLNK 215 Query: 274 QANTFHGIVSYYNEM-KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 + ++ ++ + + Y +DG+V V ++ +G + RW I+ K Sbjct: 216 WEGSGKELLENSEKITQDLIQATDYPMDGMVASVMNQDVRDHMGATSHHYRWQIAIKAKG 275 Query: 333 KQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG 392 + T + I Q+GRTG +TPV +EP+ + GA I T HN +G++ G Sbjct: 276 ETGVTTVNAITWQVGRTGNVTPVLEVEPLKLSGATIRRVTAHN---------AGRIREKG 326 Query: 393 RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKL 452 VG + V R+GEVIPK+ +++ P P CP+C++ + + + Sbjct: 327 AG--VGASIEVIRSGEVIPKLENVLT----PSDDTL-IPENCPVCETPLEWNND------ 373 Query: 453 VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF-FKSEDPAFSIRIPADIF 511 +C L C A+ +R++H+ F I G D+F K+ + R+ A F Sbjct: 374 --FLKCP-NLNCKARVEQRIRHW-----FRILG----NADWFGIKTVE-----RLVAGGF 416 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSIN--KRRNISLERFIFSLGIRHVGAEIARS 569 + T + L FG V NL ++IN K R + RF+ + GI +G +R Sbjct: 417 DSLEKIYAMTEEDFLSLEFGPVQSKNLAEAINLSKSRPVEDWRFLAAFGISDLGEGDSRK 476 Query: 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 + ++ + ++ DD ++ + GD+ + ++E L Sbjct: 477 ILSFF--------PLEELLDKTRDD---IVALHGFGDVTS-------------ISIEKGL 512 Query: 630 KEVSPSIGRH---------------EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 K + P+I RH E +VSS I K +VFTG+++ R +E LG Sbjct: 513 KALGPTI-RHMLDLGFNLQPTPLKSEMDVSSPISGKGVVFTGSMETGSRKDMEENARSLG 571 Query: 675 AVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQ 719 A V ++ KTD +I G G+ K +KAQ LGV ++ E+++L L++ Sbjct: 572 ANVQKAVTGKTDYLICGAKVGAKKTQKAQDLGVTVLTEQEYLQLVE 617 >gi|332297848|ref|YP_004439770.1| DNA ligase [Treponema brennaborense DSM 12168] gi|332180951|gb|AEE16639.1| DNA ligase [Treponema brennaborense DSM 12168] Length = 646 Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 182/718 (25%), Positives = 320/718 (44%), Gaps = 99/718 (13%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNK 77 +EL++L I + D YY + I D+E+DAL D + DP P L++ Sbjct: 10 QELAAL---IEKYQDSYYN-GEAEISDAEFDALW-----------DELKQLDPAHPVLHR 54 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 IG + + K +H +P S EK + E+ + W +K + +E K+DG Sbjct: 55 IGSDSG-NFLKASHRMPMGSQEKAADPEE--------FLAWAEKHPYDEYL-VEYKLDGA 104 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN---IPEIIEVRGEVYIS 194 + ++Y+ G F A RG+G G+D++ R + + L+ + P +RGEV + Sbjct: 105 SLELQYDNGVFAKAVTRGNGAVGDDITVNARKMGGVKLRLTRDSSPCPYTGSIRGEVVMD 164 Query: 195 KNDFLALNDEMIAVGRKPY---ANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 + V R + AN RNAA+G++RR + + YL+ + + FA Sbjct: 165 HD-----------VHRTHFPDKANCRNAANGLMRRKD-GEGCEYLHVVCYDALFSDHQFA 212 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q ++ C GF + T ++ Y ++ R+ LPYDIDGLV K E + Sbjct: 213 DEQDKIAWLSAC-GFQTVP-LEICKTAQEVIDYRAKVMESRAELPYDIDGLVVK--ERRI 268 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDI-QIGRTGILTPVARLEPVNIGGALITN 370 + RAR P I+ KF+ ++A + + +I+ + G T TP+A +PV + G + Sbjct: 269 DPEDAARAR-PDRQIAFKFSLEEAVSVVREIEWSESGAT--YTPIAVFDPVELAGTTVKR 325 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN----ERHPD-A 425 A+L N + ++ L +R+G ++V + GE+IPK+ ++ E PD + Sbjct: 326 ASLVNPNTMRAL-----------GVRLGSHIVVTKRGEIIPKIESVVPQSDSAEDSPDES 374 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + PS C C++ +V + +L ++ AC + L RL+ +++ +I Sbjct: 375 ATCAVPSECGTCRTALVDEGT----RLYCPNK-----ACPKRILHRLEKWIT--VLDIRD 423 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV--TNLYDSIN 543 LG + F S +R +D++TL ++ T E L S+ +Y S+ Sbjct: 424 LGTTLIRALFDS----GRVRSVSDLYTLTVQELTPYFLAEESLAKEKKSLGAEKVYKSLQ 479 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 RR ISL F+ I +G + L + + + A + V Sbjct: 480 SRRKISLAAFVAGFDIEGIGETLVEKLVASHPDMDTLEKLLGAAEAE-------IALVNG 532 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 GDI AQA+V+ N + +L+ S +I S ++ + FTG L ++R Sbjct: 533 FGDITAQALVQGLAE--NAAEMRSLVD--SGTIELEAVVSSGKLSGRSFCFTGELS-VKR 587 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A++ V LG + + + ++ D SK +KA LG+ +++E F L+ Sbjct: 588 SEAEQAVKALGGTTKSSVVKGLSYLVTNDTESGSSKNKKAAGLGIPVIDEAAFWELVH 645 >gi|300728177|ref|ZP_07061548.1| putative DNA ligase [Prevotella bryantii B14] gi|299774603|gb|EFI71224.1| putative DNA ligase [Prevotella bryantii B14] Length = 705 Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 191/746 (25%), Positives = 324/746 (43%), Gaps = 128/746 (17%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHS 92 D YY I+ D E+DAL R + + P++ + + +++ K H Sbjct: 21 DAYYNGQAEIMTDYEWDALFDRLKVLEQETGVILEE----SPIHHVSAD-SITGQKEEHE 75 Query: 93 IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152 LSL K EDL K+ D I+ + K+DG + Y+KGK Sbjct: 76 FAALSLAKTKKTEDLTKW----------ADGKPIWISW--KLDGLTLVATYDKGKLTKVV 123 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDGH G +++ AI IP+ + N I+ VRGE IS DF N +I G Sbjct: 124 TRGDGHFGTNITHLAPAIQGIPQKIK-NKGHIV-VRGECVISYADF---NQFLIESGED- 177 Query: 213 YANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE---------IFAKGQYEMLQKMR 262 YANPRN ASG L + ++ +R+L + L T E F + K Sbjct: 178 YANPRNLASGSLTLKDIDEVKSRHLQWIPFTLVYTDENINSWGKRMAFLEDNGMKTVKHE 237 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA--R 320 C+ P + +++ ++ + E + ++ P+ +DGLV +++ Q G Sbjct: 238 CILTPNQDNIQK------VIDRWTE-EVTKNKNPFPVDGLVIAYEDYEYS-QTGSITGHH 289 Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380 + R + K+ ++ A+++L I+ + I +PVA EPV + G + A+L N + Sbjct: 290 ATRAGYAFKWKDESATSKLDHIEWSCAASTI-SPVAVFEPVELEGTTVQRASLCNISECE 348 Query: 381 GLDASGKVMRGGRDIRVGDRVL-VKRAGEVIPKVVDI--IVNERHPDAQPFSFPSFCPIC 437 L K D VL V +A ++IPKV+ + V E H P CP+C Sbjct: 349 RLGIGDK-----------DSVLSVIKANKIIPKVIQVQQKVGELH-------IPETCPVC 390 Query: 438 --QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 Q+++V + T L C+ C A+QL++ FVS+D +I+G+ +Q L F Sbjct: 391 HSQTQIVTSIASGTRTL----HCSNP-KCPAKQLKKFARFVSKDGLDIDGISEQTLSRFI 445 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 I+ ADIF R +I + GFG S N++ +I K RN + ++ Sbjct: 446 N----MGWIKEYADIF----RLSAHLNQIATLEGFGKKSANNIHKAIEKSRNAEAHKLLY 497 Query: 556 SLGIRHVGAEIARSLAKYY-------LSYQN-------------------FAQ-EINNII 588 +L I VG ++ L K Y ++ N FAQ E N++ Sbjct: 498 ALCIPLVGKDVCNRLLKSYPLEKLAAIASGNPNINKPIVTEKEDNYELDLFAQNEQENLL 557 Query: 589 AHNNDDW--------LSL-IRVPLVGDI------IAQAIVEFYQNPRNICAVEALLKEVS 633 ++ + LS+ R+ + I + ++V+++ + N LL + Sbjct: 558 SNTTEGTTDANTFTPLSIDTRIAIFAGIDGLGPEKSASVVKWFSDEENQNEYRNLLGLL- 616 Query: 634 PSIGRHEKN-VSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVG 691 + + + N + + E V TG + + R++ + Y+ G V+ +S+ T +I Sbjct: 617 -HLSQDDNNPLGQKCEGLTFVITGDVHHYKNRNELKAYIESQGGKVTGSVSKSTSYLINN 675 Query: 692 D--NPGSKLEKAQQLGVKIMNEEQFL 715 D + K +KA QL + I++E+QF+ Sbjct: 676 DVTSTSGKNQKAHQLNIPIISEDQFI 701 >gi|218667573|ref|YP_002425666.1| DNA ligase, NAD-dependent, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519786|gb|ACK80372.1| DNA ligase, NAD-dependent, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 609 Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 183/705 (25%), Positives = 297/705 (42%), Gaps = 137/705 (19%) Query: 36 YQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPT 95 Y+ PI+ D+EYDAL R P L ++ +P P N GG KV H P Sbjct: 14 YRAGAPIMSDAEYDALVERLRREQPDHPYL-QTVEPE-PENIFGGA------KVRHHAPM 65 Query: 96 LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRG 155 LS EK + DL ++ + + R + + + + + K+DG + ++ V A RG Sbjct: 66 LSTEKAYTESDLIRYFSAVTRQAARLGMDEVIYAMTAKLDG--LAGSRDRAHGVDLATRG 123 Query: 156 DGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYAN 215 +G GED+ +A +++ ++ + GE+ + K+ F + ++ +G + + Sbjct: 124 NGLQGEDIG---KAFARGLKIVGADV----DGPGEIVMPKDFF---EEHLVPLG---FKH 170 Query: 216 PRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF-PVNNGVR- 273 PRN F V +G +E K + ++++ F P N R Sbjct: 171 PRN-------------------FMVGFVGADTE---KDHHRLVKESGMAHFVPYANLPRF 208 Query: 274 --QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 +T ++Y +E IR PYD DG+V +V+E L+ LG RW I++K Sbjct: 209 YADKDTILRDIAYISE--DIRKNTPYDTDGIVIEVEEPELRAALGSTNHHHRWQIAYKTK 266 Query: 332 EKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG 391 + A T + + Q GRTG +TPV ++PV + GA I AT HN K + Sbjct: 267 GETAETTVTGVVWQTGRTGRITPVIEIDPVELSGATIRRATAHNFQ---------KARKD 317 Query: 392 GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK 451 G + VG RV + R+GEVIP ++D++ P P+ CP C V D T Sbjct: 318 G--LGVGSRVTMIRSGEVIPFIMDVL------SPAPLDVPTACPCCNGPVEEDGEYLT-- 367 Query: 452 LVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF 511 V H C AQ + HF F I G D F A + A I Sbjct: 368 CVNPH-------CEAQAEGAISHF-----FKIMGTA----DGFGPK---AVEKIVAAGIT 408 Query: 512 TLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE--RFIFSLGIRHVGAEIARS 569 + + E +GFG NL + + + +E RF+ + GIR++G +++ Sbjct: 409 DILAVLDMTRADFEG-MGFGPGQAENLEREMKRCMSTPVEDWRFLAAFGIRYLGRGDSKA 467 Query: 570 L--------------AKYYLSYQNFAQEINNIIAHN-NDDWLSLIRVPLVGDIIAQAIVE 614 L ++ FA++ IAH+ W+ + +A+ + Sbjct: 468 LLCAIGGLDALNGITPAQIMAIDGFAEKTALCIAHDLTWRWMEI-----------EAVRD 516 Query: 615 FYQNPRNICAVEALLKEVSPS--IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 + P L +P+ IG + + LVFTGT K R + Sbjct: 517 RMEAP---------LVSSAPAGDIG------TLPLAGMSLVFTGTFSK-DREVMETQAEA 560 Query: 673 LGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLF 716 LGA V + ++ KT ++++G+ PG SK KA LG + E ++L Sbjct: 561 LGAKVQSGVNGKTSVLVIGEKPGASKTTKAAALGTPVWTEAEYLL 605 >gi|213421996|ref|ZP_03355062.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 271 Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/276 (34%), Positives = 154/276 (55%), Gaps = 10/276 (3%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 Y+ P ILD+EYD L R + PDL P+ P ++G + ++ H +P Sbjct: 2 YHVMDAPEILDAEYDRLMRELRELEAQRPDLIT---PDSPTQRVGAAPLTAFNQIRHEVP 58 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL+ +++ E F R+ + K ++ + E K+DG ++I YE G V AA R Sbjct: 59 MLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELKLDGLAVSILYENGVLVSAATR 116 Query: 155 GDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 GDG +GED+++ +R I IP ++ NIP +EVRGEV++ + F +N++ G K + Sbjct: 117 GDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVF 176 Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEIFAKGQYEMLQKMRCLGFPVNN 270 ANPRNAA+G LR+L+P R L FF +G+G + E+ +LQ + G PV++ Sbjct: 177 ANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQ-FKAWGLPVSD 235 Query: 271 GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 V ++ ++ +Y+ ++ R TL +DIDG+V KV Sbjct: 236 RVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKV 271 >gi|307826049|ref|ZP_07656262.1| DNA ligase (NAD(+)) [Methylobacter tundripaludum SV96] gi|307732888|gb|EFO03752.1| DNA ligase (NAD(+)) [Methylobacter tundripaludum SV96] Length = 654 Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 181/728 (24%), Positives = 323/728 (44%), Gaps = 122/728 (16%) Query: 9 IEALSIEQARKELSSLEQEISYHDDC--YYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I ++ + + KEL++ EQ + + C Y+ +P I D++YD + F Sbjct: 27 IAQIAKQASPKELTN-EQLLEFLQVCNALYRGGEPFISDADYDFV----------FLAEL 75 Query: 67 RSEDPNGP-LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 + P+ P L + E+ VT P LS EK ++ + K+++R+ + DD Sbjct: 76 QKRHPHHPYLETVEPEVVAVGKTVTLPEPMLSTEKTYSQSGIEKWLSRLEK---AADDCD 132 Query: 126 IFFTL-----EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + F+ PK+DG Y+ GK +Y RGDG G D+S RV Sbjct: 133 VDFSTLMIRATPKLDGYAA---YDDGKLLYT--RGDGRKGTDIS----------RVFERG 177 Query: 181 IP-----EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235 + + + GE+ +S+ F N+ + + N RN + I++ D+ + Sbjct: 178 LKVGGNGKRGQGAGEIVVSQTYF---NNHLADY----FENSRNFQASIIKE---KDLEQ- 226 Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE-MKSIRST 294 H L E +Q + FP + T +++ +++ ++ + S Sbjct: 227 -----HAL------------EAIQNHAAVFFPFSQLPDWKGTAAEVLADFDQVIEKVYSL 269 Query: 295 LPYDIDGLVYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 + YD+DG+V++ V ++K LG RW I++K + A ++ + Q R+G + Sbjct: 270 VDYDVDGVVFELVGNEQIKKYLGATRHHHRWQIAYKSNVETAEVIVIKVTPQTSRSGRVN 329 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA L P + GA+I+ AT H+ +K L I VG + + R+G VIPK+ Sbjct: 330 PVAELTPTKLSGAVISRATAHHYGMVKEL-----------GIGVGTLIELTRSGLVIPKI 378 Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 +I+ + P P CP C S +V D + C C AQ ++ Sbjct: 379 ERVII-PKEP-----QIPEHCPSCGSELVWDSD--------YLYCLNTTKCPAQIENTIE 424 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 HF R N++G G++ ++ A I ++ L Q +GFGD Sbjct: 425 HFF-RTLANVDGFGQKTVEKLH-----ACGINSVYAVYQLDMEQLQD-------MGFGDK 471 Query: 534 SVTNLYDSINKRRNISLE--RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + NL D + + R+ S+E RF+ + GI +G L +++ F + ++I Sbjct: 472 TAQNLMDQLQRSRSESIEDWRFLGAFGIHRMGLGNCERLLQHHHLMDIFKLTVEDVI--- 528 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 N + + V + +A+ +F Q I + L + +P I ++N+S I K Sbjct: 529 NIEGFAEKTSAAVVECLAKIKTDFMQ----IHQLGFNLIQ-TPLIAEQQQNISP-ISGKT 582 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTG + +R + +LGA V + ++ KTD ++ G + G +K+ A + GV++++ Sbjct: 583 IVFTGAMIHGKRDDMSKEAKRLGAKVGSSVTGKTDFLVTGSDVGAAKIAAATEKGVRVIS 642 Query: 711 EEQFLFLL 718 EE +L LL Sbjct: 643 EEDYLALL 650 >gi|332992915|gb|AEF02970.1| DNA ligase (NAD(+)) [Alteromonas sp. SN2] Length = 649 Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 170/702 (24%), Positives = 317/702 (45%), Gaps = 128/702 (18%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKIGGEMNLSLFKVTH 91 + Y+ PI+ D +YD + L R ++ P LN + E + V Sbjct: 53 NALYRAGSPILSDKQYDI-----------YISLLRDQNHLHPYLNTVEPEPLIESKTVEL 101 Query: 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTLEPKIDGTMITIRYEKGKFV 149 LS EK ++++D+ K++ RI + Q+ + + I + PK+DG Y+ G + Sbjct: 102 PERMLSTEKAYSLQDIEKWVKRIQKAAQETNVPEEEIDIRVTPKLDGYA---AYDDGDTL 158 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAV 208 Y RGDG+ G+DV+ + R L + N E GE+ I K+ F V Sbjct: 159 YT--RGDGYRGQDVTRAFK------RGLKVANSGERGLGPGEIVIKKSYF-------TEV 203 Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 + N RN + I+ + + + ++ C+ +P Sbjct: 204 LSSYFENSRNIQAAIIAEKKVDNRIQ---------------------KAIKDGACVFYPF 242 Query: 269 ----NNGVRQA---NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 NN V+ + + F IV + I S++ +D+DG++ + +++K +G R+ Sbjct: 243 ALLKNNTVKISVLMDEFESIV------EGIWSSVDFDVDGVILETTNETIKKYMGATRRN 296 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK- 380 RW I+ K E+ A+ ++ + Q RTG + PVA L P + G I+ T+H+ + +K Sbjct: 297 HRWQIAFKVNEESANVEVVRVIPQTSRTGRIAPVAELVPTKLSGVTISRVTVHHYNMVKT 356 Query: 381 -GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQS 439 G+ A G ++R + R+G VIPK+ +++ + PD P CP C S Sbjct: 357 NGVGA-GAIIR------------LVRSGLVIPKIEEVLT-KVAPD-----IPDSCPSCGS 397 Query: 440 RVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSED 499 ++ + + L+ C + C AQ L HF + N +G G + ++ Sbjct: 398 HLLWE----SDNLI----CPNKIDCPAQTENTLVHFF-KTLGNNDGFGSKTIEKL----- 443 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENIL--GFGDVSVTNLYDSINKRRNISLE--RFIF 555 +F ++ +I++L+ +++ L GFG+ + NL++ + R+I +E RF+ Sbjct: 444 TSFGVKYIHEIYSLE---------VDDFLKIGFGEKTAINLFNQLQASRSIEIEDWRFLS 494 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 + G+ +G+ L +++ F +++ +I++ +I A+AI E Sbjct: 495 AFGVSRLGSGNCEKLLEHHSLVSLFELTVSD-----------MIQIDGFAEISAEAIKEG 543 Query: 616 YQNPR-NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +N R V L + P+ + + +SS I +VFTGT+ + R ++ LG Sbjct: 544 LENIREEFFKVYDLGFALRPTAIENTEKLSSPISGAIIVFTGTMIEGSRSDMEKNAKALG 603 Query: 675 AVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715 A V ++ KT ++ GD G +K+ A+ GVK+++E+Q+L Sbjct: 604 AKVGKSVTSKTTYLVTGDKVGETKINAAKDKGVKVLSEQQYL 645 >gi|290242978|ref|YP_003494648.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. K90mix] gi|288945483|gb|ADC73181.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. K90mix] Length = 652 Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 171/700 (24%), Positives = 293/700 (41%), Gaps = 125/700 (17%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK---V 89 + Y+ +P++ D+ YD H F +DP P K E F+ V Sbjct: 41 NASYRAGQPLVPDAVYD----------HLFIATLSEKDPEHPFLK-AVEPEGEAFEGDTV 89 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTLEPKIDGTMITIRYEKGK 147 H P LS +K + ++LR+F+ R+ + ++ F + PK+DG + ++ G+ Sbjct: 90 KHDTPMLSTDKAYTEDELRRFLGRVEVAAEALGIRSETLTFRMTPKLDG-IAGMQRPDGR 148 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V RG+G +G D+S R L + GE+ + + F DE+ Sbjct: 149 LVT---RGNGFAGADISHAFE------RGLRTPDGSMEPGPGELVLEEMFF---QDEIRV 196 Query: 208 VGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267 P+ PRN +G + ++ + + FP Sbjct: 197 AFGMPH--PRNFVAGFV---------------------GADTVKPHHQKAADAQAIIFFP 233 Query: 268 VNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 QA+ + S+ M+++R +PY DG+V +V + +++ +G + RW + Sbjct: 234 YRQLPAWQASAAVVMASWQERMEALRQAVPYRTDGVVLEVTDETVKAHMGSTSHHHRWRV 293 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 + K + A R+ DI IQ GRTG +TPV +PV + GA I+N T H A+ Sbjct: 294 ALKTKGEVAHVRVRDIRIQTGRTGRITPVLEFDPVLLTGARISNVTAHT--------AAN 345 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 +G + VG + + RAG+VIPK+ ++ P ++P + + CP C + Sbjct: 346 LAQQG---LGVGAEIEISRAGDVIPKLERVL----EPASEPMTV-THCPSCGHEAEVE-- 395 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 G+ C + C AQ RL+HF F++ G D F Sbjct: 396 ---GEYAV---CPNTVGCLAQAEARLRHF-----FHVMG----NADLFG----------- 429 Query: 507 PADIFTLQRRQQTSTTKIENI-------LGFGDVSVTNLYDSINK--RRNISLERFIFSL 557 P + L T + ++ +GFG +NL + + R + RF+ +L Sbjct: 430 PKTVEVLVENGHTDLRGLFDLNAVAFVSMGFGPGQASNLVRELARCLREAVPDWRFLAAL 489 Query: 558 GIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 G+RH+G +R L Y + I N+ A + + V G I + +I E Q Sbjct: 490 GLRHLGRGDSRKLLAVYP-----LESITNLTAED------IAAVEGFGPITSASIAEQLQ 538 Query: 618 NPRNICAVEALLK-----EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 R +EA+++ E +P G + + +VFTGTL R + +E Sbjct: 539 EQRE--RIEAMIRLGFNLERTPLAGEG-AAAEGPLAGQSIVFTGTLTLGSRGELEEQARG 595 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 LGA + + ++ KT I++ G+ GSK +KA+ + K E+ Sbjct: 596 LGATIQSGVNSKTTILVCGEKAGSKRKKAEAINEKAGKEQ 635 >gi|162452733|ref|YP_001615100.1| DNA ligase [Sorangium cellulosum 'So ce 56'] gi|190359289|sp|A9F3W3|DNLJ_SORC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161163315|emb|CAN94620.1| DNA ligase [Sorangium cellulosum 'So ce 56'] Length = 676 Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 188/737 (25%), Positives = 308/737 (41%), Gaps = 124/737 (16%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L + I + YY P I D+ +DAL+ A+ A P LAR Sbjct: 26 KARIEELAERIEKYRASYYA-GHPEISDAAFDALEDELRALDPAHPVLAR---------- 74 Query: 78 IGGEMNLSLF-KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP---- 132 +G ++ + K H IP SL K+ + ++L ++ R K P Sbjct: 75 VGSASLITEWEKARHEIPMGSLNKVVSEDELLGWVARCDEILVKDGHGDGGTGAAPPAPG 134 Query: 133 -------------KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 K+DG I + Y+ GK V A RGDG GE ++A + + IP + Sbjct: 135 SISSVAGDLFVAEKLDGISIEVIYKGGKLVDAITRGDGEWGERITANVARMKGIPS--RI 192 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFF 239 + VRGE+ + +D + V +PRN A+G +R + + Sbjct: 193 REKGRLSVRGEIILRLSD---MKRHFPGV-----TSPRNMAAGAAKRFDGQG-AEHCTVL 243 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHG----IVSYYNEMKS-IRS 293 + + EI + ++ L+++ G T HG +V Y S +R+ Sbjct: 244 FYDVADHLEIPTCRARFAWLREL---------GFATPQTAHGSVEDVVKLYRRYSSELRA 294 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 L Y+IDGLV VD +Q LG+ R PR ++ KFA T ++ I G +G +T Sbjct: 295 GLDYEIDGLVVYVDSLHVQGLLGDVNRRPRGAVAFKFASPAKVTTVVAIQWDTGPSGRVT 354 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKV 413 PVA +EPV + GA + A+LHN ++ L I VGD VLV R +VIP V Sbjct: 355 PVAIVEPVELAGANVRRASLHNSANVRSL-----------GIGVGDEVLVSRRNDVIPYV 403 Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 + +V +R P A P PS CP+C + +V + G+ + AC A R+ Sbjct: 404 EE-VVEKRGPVAVP---PSVCPVCSAPLVVE-----GEYLLCRNA----ACRALIEGRIH 450 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 +++ DA G + ++ A +R P D++ L + I ++ G+ Sbjct: 451 NWI--DAIGALEWGDKLIEQVVA----AGLVREPLDLYKL------TVKSIADLDRRGEK 498 Query: 534 SVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNND 593 S T + + R ++L F+ +LGI + AR L + I ++A D Sbjct: 499 SATKCLEQLKSRLPLALPVFLAALGIEGFAIQTARLLVSAGYTT------IEKLLAAGED 552 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN----VSSEIEN 649 + L +P +G I A +IV L+ S IGR V+ E E Sbjct: 553 E---LAGIPGLGAIKAASIVRG-------------LRARSDEIGRLLAAGIVPVAPEAEG 596 Query: 650 K----KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQ 703 FTG + R + V G V ++++ + +++ D + SK KA++ Sbjct: 597 PLAGLTFCFTGAGAR-PRGELTHLVESSGGRVLNSVTKELNYLVIADVASTSSKAVKARK 655 Query: 704 LGVKIMNEEQFLFLLQQ 720 G K++ E+ L+ + Sbjct: 656 YGTKLITEDDLDKLIAE 672 >gi|261884935|ref|ZP_06008974.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 195 Score = 157 bits (398), Expect = 4e-36, Method: Composition-based stats. Identities = 84/188 (44%), Positives = 117/188 (62%), Gaps = 4/188 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P+ ++G L+ F V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RDDSPS---RRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYI 193 EVRGEVY+ Sbjct: 181 EVRGEVYM 188 >gi|145640787|ref|ZP_01796370.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] gi|145274713|gb|EDK14576.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21] Length = 191 Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 89/216 (41%), Positives = 135/216 (62%), Gaps = 29/216 (13%) Query: 341 DIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDR 400 D++ Q+GRTG +TPVA+LEPV + G ++NATLHN D I+ L +I +GD Sbjct: 3 DVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERL-----------NIAIGDT 51 Query: 401 VLVKRAGEVIPKVVDIIVNERHPD-AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCT 459 V+++RAG+VIP+++ ++ +ER PD A+P FP+ CP+C S+++R G+ VA RCT Sbjct: 52 VVIRRAGDVIPQIIGVL-HERRPDNAKPIIFPTNCPVCDSQIIR----IEGEAVA--RCT 104 Query: 460 GGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT 519 GGL C+AQ+ E LKHFVSR A +I+G+G + ++ E I PAD+F L T Sbjct: 105 GGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRE----LIHTPADLFKL---DLT 157 Query: 520 STTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + T++E + G S N +S+ ++ +L RFI Sbjct: 158 TLTRLERM---GAKSAENALNSLENAKSTTLARFIL 190 >gi|291060005|gb|ADD72740.1| DNA ligase, NAD-dependent [Treponema pallidum subsp. pallidum str. Chicago] Length = 840 Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 188/743 (25%), Positives = 320/743 (43%), Gaps = 117/743 (15%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + ++ A++ + LE+ I +H D YY ++ I D +DAL + +LAR Sbjct: 13 LRPCAMSTAQRRVQELEKLILHHQDRYYN-AESDISDDAFDAL----------WEELARL 61 Query: 69 EDPNGPLNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 DP PL K IG + K H +P S K + E + W KK+ F Sbjct: 62 -DPGNPLLKAIGSDSQRDAVKKRHIVPMGSQHKAADEES--------FSAWAKKNALQAF 112 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA----IPTIPRVLSL--NI 181 ++ K+DG + ++YE+G F A RG+G G+DV+A +R +PT+ N+ Sbjct: 113 L-VQHKLDGVSLELQYERGHFCCALTRGNGIVGDDVTANVRGMRGFVPTLTAEWGPCGNL 171 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKP-YANPRNAASGILRRLNPTDITRYLNFFV 240 P VRGEV + K+ I P +AN RN +GIL+R + T +L+ Sbjct: 172 PFTGGVRGEVIMHKD---------IHRSHYPTHANCRNTVNGILKRKDGRGRT-HLHIVC 221 Query: 241 H-------GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS 293 + G T + + E L + GF + R AN +V+ +E+ R Sbjct: 222 YDAVPGTPGKPFTGSLPFADETEKLAWLARQGFVTVHSHRCANA-QEVVALRSEIMRTRE 280 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL- 352 LPY IDGLV K + Q R P+ I+ KF+ ++A T L D+ Q +G+ Sbjct: 281 LLPYSIDGLVVKSTDLDFQDAQLPR---PKKQIAFKFSTQEAITTLRDVQWQT--SGVTY 335 Query: 353 TPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPK 412 TP+ +PV + G + A L N + + L +++G VL+ + GE+IPK Sbjct: 336 TPIGITDPVRLAGTTVKRANLCNPNMLTKL-----------CLKIGSHVLISKRGEIIPK 384 Query: 413 VVDIIVNERHPDAQPFSFPSFCPICQSRV----VRDLNPKTG-KLVAAHRCTGGLACSAQ 467 + ++ H AQ P+ C C + + R P L++ HR T + C Sbjct: 385 IEALVSTPAH--AQEIHIPTQCTSCNTVLENSGSRLFCPNVNCPLLSHHRITRWIEC--- 439 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527 I+ +G + + F+ + RIP D++TL T IE I Sbjct: 440 -------------LEIKHVGTELIQRLFEEKKVR---RIP-DLYTL-----TCEDLIE-I 476 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 G+ + + ++I+ ++ I+L+ FI GI +G + L + + Sbjct: 477 EHVGNATAKKILEAIHHKKEIALQTFIAGFGIEGIGETMGEKL--ICAGFDTLEK----- 529 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR-NICAVEALLKEVSPSIGRHEKNVSSE 646 + H + L I G +A+++V + ++C E L + + + + S Sbjct: 530 VLHATTETLESIY--QFGTELAKSVVTGIARVKDDMC--ELLDRGFVRILAKQQ--AESP 583 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKA 701 + K F+G+L+ R + LG VV ++R +I KL+K Sbjct: 584 LRGKSFCFSGSLRNGDRATIHR-IRALGGVVRTSVTRDLSYLIFESLSQPYRTAQKLKKE 642 Query: 702 QQLGVKIMNEEQFLFLLQQYNTT 724 Q + ++I++E++F LL Q + + Sbjct: 643 QGVALEIISEDEFCRLLDQASAS 665 >gi|15639622|ref|NP_219072.1| DNA ligase (lig) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025860|ref|YP_001933632.1| DNA ligase [Treponema pallidum subsp. pallidum SS14] gi|6014987|sp|O83642|DNLJ_TREPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781445|sp|B2S3M4|DNLJ_TREPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|3322933|gb|AAC65609.1| DNA ligase (lig) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018435|gb|ACD71053.1| DNA ligase [Treponema pallidum subsp. pallidum SS14] Length = 823 Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 188/738 (25%), Positives = 318/738 (43%), Gaps = 117/738 (15%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + A++ + LE+ I +H D YY ++ I D +DAL + +LAR DP Sbjct: 1 MSTAQRRVQELEKLILHHQDRYYN-AESDISDDAFDAL----------WEELARL-DPGN 48 Query: 74 PLNK-IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 PL K IG + K H +P S K + E + W KK+ F ++ Sbjct: 49 PLLKAIGSDSQRDAVKKRHIVPMGSQHKAADEES--------FSAWAKKNALQAFL-VQH 99 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA----IPTIPRVLSL--NIPEIIE 186 K+DG + ++YE+G F A RG+G G+DV+A +R +PT+ N+P Sbjct: 100 KLDGVSLELQYERGHFCCALTRGNGIVGDDVTANVRGMRGFVPTLTAEWGPCGNLPFTGG 159 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKP-YANPRNAASGILRRLNPTDITRYLNFFVH---- 241 VRGEV + K+ I P +AN RN +GIL+R + T +L+ + Sbjct: 160 VRGEVIMHKD---------IHRSHYPTHANCRNTVNGILKRKDGRGRT-HLHIVCYDAVP 209 Query: 242 ---GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 G T + + E L + GF + R AN +V+ +E+ R LPY Sbjct: 210 GTPGKPFTGSLPFADETEKLAWLARQGFVTVHSHRCANA-QEVVALRSEIMRTRELLPYS 268 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGIL-TPVAR 357 IDGLV K + Q R P+ I+ KF+ ++A T L D+ Q +G+ TP+ Sbjct: 269 IDGLVVKSTDLDFQDAQLPR---PKKQIAFKFSTQEAITTLRDVQWQT--SGVTYTPIGI 323 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 +PV + G + A L N + + L +++G VL+ + GE+IPK+ ++ Sbjct: 324 TDPVRLAGTTVKRANLCNPNMLTKL-----------CLKIGSHVLISKRGEIIPKIEALV 372 Query: 418 VNERHPDAQPFSFPSFCPICQSRV----VRDLNPKTG-KLVAAHRCTGGLACSAQQLERL 472 H AQ P+ C C + + R P L++ HR T + C Sbjct: 373 STPAH--AQEIHIPTQCTSCNTVLENSGSRLFCPNVNCPLLSHHRITRWIEC-------- 422 Query: 473 KHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532 I+ +G + + F+ + RIP D++TL T IE I G+ Sbjct: 423 --------LEIKHVGTELIQRLFEEKKVR---RIP-DLYTL-----TCEDLIE-IEHVGN 464 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 + + ++I+ ++ I+L+ FI GI +G + L + + + H Sbjct: 465 ATAKKILEAIHHKKEIALQTFIAGFGIEGIGETMGEKL--ICAGFDTLEK-----VLHAT 517 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPR-NICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 + L I G +A+++V + ++C E L + + + + S + K Sbjct: 518 TETLESIY--QFGTELAKSVVTGIARVKDDMC--ELLDRGFVRILAKQQ--AESPLRGKS 571 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----NPGSKLEKAQQLGV 706 F+G+L+ R + LG VV ++R +I KL+K Q + + Sbjct: 572 FCFSGSLRNGDRATIHR-IRALGGVVRTSVTRDLSYLIFESLSQPYRTAQKLKKEQGVAL 630 Query: 707 KIMNEEQFLFLLQQYNTT 724 +I++E++F LL Q + + Sbjct: 631 EIISEDEFCRLLDQASAS 648 >gi|51244858|ref|YP_064742.1| NAD-dependent DNA ligase [Desulfotalea psychrophila LSv54] gi|81642639|sp|Q6API9|DNLJ_DESPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|50875895|emb|CAG35735.1| related to NAD-dependent DNA ligase [Desulfotalea psychrophila LSv54] Length = 679 Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 171/698 (24%), Positives = 299/698 (42%), Gaps = 115/698 (16%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKIGGEMNLSLFKVTH 91 + Y+ P++ D YD F R +P P L ++ E V Sbjct: 74 NALYRAGYPLLSDEAYD----------FTFLTELRRRNPQHPYLLQVEAEPVQQGKTVEL 123 Query: 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQKK--DDNSIFFTLEPKIDGTMITIRYEKGKFV 149 + LS +K +++E +R++ RI + Q+K D S+ F PK+DG Y+ G+ + Sbjct: 124 PMRMLSTDKAYDLESIRRWGRRIEKAAQEKGIDFTSLVFRGTPKLDGFAA---YDDGRRL 180 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 Y RGDG G DVS + R S + GE+ ++K+ F E +A Sbjct: 181 YT--RGDGKKGTDVSRAFARGLQVSRGGSRGLGA-----GEIVVNKDYF----TEHLA-- 227 Query: 210 RKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269 + + N RN + +++ + T L V + + IF + ML R Sbjct: 228 -QFFDNSRNFQASLIK-----EKTLALPV-VKAIEAGAAIFFP--FSMLPDWR------G 272 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 + + F IV + + +PY+IDG+V+++ + L++ +G RW I+ K Sbjct: 273 SWLELLQEFEEIV------EGLWQKVPYEIDGVVFEIIDEGLREVMGATRHHHRWQIAFK 326 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 + A +L + Q R G + PVA +EP + GALI T H+ ++ Sbjct: 327 KNTEIAEVTVLRVRPQTSRLGRVNPVAEVEPTRLSGALIQRVTAHHYAMVR--------- 377 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449 R I G R+ + R+GEVIPK+ +++ + A P+ CP C S + D Sbjct: 378 --DRGIGPGARIRMSRSGEVIPKIEEVV---KPVAAAQLDIPAHCPSCGSDLAWD----- 427 Query: 450 GKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPAD 509 G + C ++C AQ ++HF + N++G G + ++ + +PA Sbjct: 428 GDYLF---CLNNMSCPAQITNSMEHFF-KILGNVDGFGPSSVQRLYEGG----LVDLPA- 478 Query: 510 IFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE--RFIFSLGIRHVGAEIA 567 ++ ++ + E + GFG TN+ + +N+ R +E RF+ + G+ +G Sbjct: 479 LYAME------SADFEQV-GFGPKQATNMVEQLNRSREELIEDWRFLAAFGVHRLGMGNC 531 Query: 568 RSLAKYY-------LSYQNFAQEINNI---IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQ 617 L +Y LS + EI AH+ L+ I+ D+ Q ++ Sbjct: 532 EKLLRYVRLEDVFNLSEEQIVAEIKGFQEKTAHSICAGLAGIK-----DLFFQLFALGFK 586 Query: 618 NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 E +P + + S I K +VFTG + R ++ LGA V Sbjct: 587 ------------LEPTPLLAEGGQGEKSPISGKTIVFTGAMLAASRGDMEKQAKALGATV 634 Query: 678 SAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQF 714 ++ KTD+++ G G +K+ KA+ LG+ I++EE + Sbjct: 635 GKSITGKTDMLVTGQRVGATKMAKAETLGIAILSEEAY 672 >gi|218459622|ref|ZP_03499713.1| NAD-dependent DNA ligase LigA [Rhizobium etli Kim 5] Length = 186 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 76/184 (41%), Positives = 118/184 (64%) Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 V LY +IN+ R+I+L RFI++LGIRHVG A+ LA+ Y +Y+ FA + + D Sbjct: 1 VGKLYAAINEPRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMREAAPLSGDA 60 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVF 654 W L + +G+++A+A+VEFY+ P NI + LL EV+P S + K +VF Sbjct: 61 WNDLNAIEGIGEVVARAMVEFYKEPLNIEVITRLLDEVTPQEAEQPVTAGSPVAGKTVVF 120 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG+L+K R +A+ LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++ Sbjct: 121 TGSLEKFTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEW 180 Query: 715 LFLL 718 L L+ Sbjct: 181 LALI 184 >gi|281414409|ref|ZP_06246151.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665] Length = 248 Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/230 (38%), Positives = 127/230 (55%), Gaps = 6/230 (2%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E L + + YYQ P I D+EYDAL RR + + P+L ++ P + Sbjct: 22 REEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELVSNDSPT---QE 78 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYR-FWQKKDDNSIFFTLEPKIDG 136 +GGE++ + V H SLE ++++E+L + R + Q + + + +E KIDG Sbjct: 79 VGGEVSEAFAPVRHGARMYSLEDVFSVEELEVWFRRAAQALTQVRPGVAPRWLVEVKIDG 138 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISK 195 + +RY G+ V AA RGDG +GEDV+A +R I IP LS P EVRGEV++S Sbjct: 139 LAVALRYRDGRLVQAATRGDGVTGEDVTANVRTIGDIPHELSGEGWPAEFEVRGEVFMSS 198 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 F LN G+ P+ANPRNAA+G LR+ +P R L FVHG+G Sbjct: 199 AAFAELNARRAEEGQPPFANPRNAAAGALRQKDPAVTAQRPLAMFVHGIG 248 >gi|328947954|ref|YP_004365291.1| DNA ligase [Treponema succinifaciens DSM 2489] gi|328448278|gb|AEB13994.1| DNA ligase [Treponema succinifaciens DSM 2489] Length = 651 Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 175/717 (24%), Positives = 323/717 (45%), Gaps = 105/717 (14%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K +S LE+ I + YY + I D+E+D L + +L + N L+K+ Sbjct: 23 KRISELEKLIEKYQASYYN-GEAEISDAEFDKL----------WDELKSLDSANPILHKV 71 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + + K H +P S EK E+ + W KK D S + +E K+DG Sbjct: 72 GADSG-NFQKSPHVMPMGSQEKAATPEE--------FLDWAKKHDYSEYL-VEYKLDGAS 121 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 + ++Y G F+ A RGDG G+ ++A + + + + L I RGEV ++ Sbjct: 122 LELQYSDGIFLRAVTRGDGTVGDVITANAKKMQGVVQELKEKFTGGI--RGEVIMTHQ-- 177 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL----GKTSEIFAKGQ 254 ++++ + AN RNAA+G+++R + + + L + + GK +G+ Sbjct: 178 --VHEKFFS----DKANCRNAANGLMKRKD-GEGSENLTLITYDVWASEGKQPFNDEEGK 230 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + LQ+ GF V ++ + ++ Y + + +R L YDIDGLV K + Sbjct: 231 LDFLQRN---GFNVVP-LKICKSTQEVIDYRSSVMELRKNLDYDIDGLVVKERAVDHEDA 286 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDI-QIGRTGILTPVARLEPVNIGGALITNATL 373 L +R P I+ KF+ ++A + + +I+ + G T TPVA +PV++ G + A+L Sbjct: 287 LRDR---PDRQIAFKFSLEEAVSIVRNIEWNETGAT--YTPVAVFDPVDLNGTTVKRASL 341 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-PDAQPFSFPS 432 N + I+ L ++++G V+V + GE+IPK+V ++ + + P + P Sbjct: 342 VNPNLIRAL-----------NVKIGSHVVVVKRGEIIPKIVSVLPEQENLPSVK---IPE 387 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 C C + ++ + +L ++ C + L +L ++ + +I LG+ + Sbjct: 388 KCACCGTSLIDE----GTRLFCPNK-----NCEKRILHQLLKWI--NVIDIRDLGETLIT 436 Query: 493 FFFKSEDPAFSIRIPADIFTLQRR-------QQTSTTKIENILGFGDVSVTNLYDSINKR 545 F+++ +R +D+++L S K + LG ++ SI R Sbjct: 437 SLFETK----KVRSISDLYSLTASDLVPYFLNSESMEKEKKSLG-----AEKVFASIQSR 487 Query: 546 RNISLERFIFSLGIRHVGAEIARSL-AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R I L +FI I +G + +L A + + Q IA V Sbjct: 488 RKIPLAKFIAGFDIEGIGETVVETLIAGGFNTLQKIFDAKEEEIAG----------VYRF 537 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 + +A +VE Q R +++L+ S +I E ++ K FTG L ++R Sbjct: 538 AETLAHTLVEGIQENRE--EMQSLVS--SGTISVIEGAAQGKLAGKSFCFTGELVSMKRQ 593 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNP--GSKLEKAQQLGVKIMNEEQFLFLLQ 719 AQ V Q G V + + + ++ D SK +KA +LG+ +++E++FL L++ Sbjct: 594 DAQNLVKQNGGAVKSSVVKGLSFLVTNDTSSGSSKNKKAMELGIPVIDEKEFLALIK 650 >gi|323228068|gb|EGA12205.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 276 Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 90/280 (32%), Positives = 152/280 (54%), Gaps = 10/280 (3%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG--KTSEI 249 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G + E+ Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK 289 +LQ + G PV++ V ++ ++ +Y+ ++ Sbjct: 236 PDTHLGRLLQ-FKAWGLPVSDRVTLCDSPQAVLDFYHNVE 274 >gi|261886171|ref|ZP_06010210.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 292 Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 147/284 (51%), Gaps = 14/284 (4%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 YY P+ D EYD L PDL S P N+IGGE+ K++H Sbjct: 19 AYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSY---SPTNRIGGEILDEFKKISH-- 73 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAAL 153 +EK+W++ED+ + + + + D F EPK DG + + YE G + AA Sbjct: 74 ----IEKMWSMEDIFS-DSELVAWISRGDKTDCEFFAEPKFDGASLNLLYENGNLISAAT 128 Query: 154 RGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPY 213 RGDG GEDV+ + I ++P L ++ + IE+RGEV I+K+DF +N E P Sbjct: 129 RGDGSVGEDVTNNAKVISSVP--LQIDYKDKIEIRGEVVITKDDFELINIERSKNSEPPL 186 Query: 214 ANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L+ + R L F+ G+G+ S F K +++ +R LGF +N Sbjct: 187 ANPRNAAAGSLRQLDNGIVKQRKLKFYPWGVGENSLKFNK-HSQIMDFVRSLGFLHDNFC 245 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + + Y E+ S+R P +DG+V +V++ S QLG Sbjct: 246 KVIRGIDELKIAYKELLSVRELKPILMDGMVIRVNDLSKANQLG 289 >gi|126174865|ref|YP_001051014.1| DNA ligase (NAD(+)) [Shewanella baltica OS155] gi|166216240|sp|A3D5Y2|DNLJ_SHEB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|125998070|gb|ABN62145.1| DNA ligase (NAD(+)) [Shewanella baltica OS155] Length = 648 Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 170/701 (24%), Positives = 321/701 (45%), Gaps = 119/701 (16%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKIGGEMNLSLFKVTH 91 + Y+ P+I D YD+ + A+ H PN P + + E+ L+L K T Sbjct: 51 NALYRSGFPVIEDILYDSFWNKF-ALNH----------PNHPFITSVETEV-LNLGK-TV 97 Query: 92 SIP--TLSLEKIWNIEDLRKFITRIYRFWQKKD--DNSIFFTLEPKIDGTMITIRYEKGK 147 ++P LS +K ++ E+++K++ RI + ++ D N I + PK+DG ++ G+ Sbjct: 98 ALPQKMLSTDKAYSKEEIKKWLDRILKAAEELDIDTNEIEIRITPKLDGYA---AFDDGE 154 Query: 148 FVYAALRGDGHSGEDVSAC----IRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 +Y RGDG G+DVS ++ + R L GE+ I+K F + Sbjct: 155 RLYT--RGDGVKGQDVSRAFERGLKVVRNSERGLG---------AGEIVINKAYF----E 199 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 + ++ + + N RN + I+ N + R L E +++ C Sbjct: 200 KKLS---QYFENSRNIQAAIIAEKNVDE--RVL-------------------EAIKEGAC 235 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEM-KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 + P + +++ ++ + + + +++ YD+DG++ + + +++ +G + Sbjct: 236 VFHPFAVLPNWTGNYQDLMTDFDGIIEQVWNSVEYDVDGVILEATDTRIKEHMGANRKFH 295 Query: 323 RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGL 382 RW I+ K ++ A ++ + Q RTG +TPVA L P I GA+I+ T+H+ + +K + Sbjct: 296 RWQIAFKINDEVAEVEVISVTPQTSRTGRVTPVAELVPTRISGAMISRVTVHHYNMVK-I 354 Query: 383 DASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVV 442 + G G V + R+G VIPK+ +I + D Q P CP C+S ++ Sbjct: 355 NGVGP----------GAIVQIVRSGLVIPKIEKVI---KPVDPQ---MPELCPSCKSHLL 398 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 + + LV C C AQ L HF A N +G G + ++ Sbjct: 399 WE----SDHLV----CPNKSDCPAQTENTLVHFFKTLANN-DGFGPKNIEKL-----ANL 444 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE--RFIFSLGIR 560 ++ ++ L+ Q + GFG+ + NLYD + +NI +E RF+ + G+ Sbjct: 445 GVKHIHQMYDLKPHQFA-------MYGFGEKTSKNLYDQLQASKNIEIEDWRFLSAFGVS 497 Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 +G L ++Y + F + +I N RV A+AIV+ N + Sbjct: 498 RLGGGNCEKLLQHYSLRELFEATVEDIAELN-----GFARVS------AEAIVKGLANIK 546 Query: 621 -NICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 V L +S + + E ++++S + K +VFTG + + +R +++ LGA V Sbjct: 547 EEFFKVYDLGFNLSITPKQSELESLASPLTGKIVVFTGKMLQGKRSDMEKHAKALGAKVG 606 Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 ++ T +I G G +K+ A++ GVK+++E+++L L+ Sbjct: 607 TSVTSNTTYLIAGLKVGETKINDAKEKGVKVLSEQEYLDLI 647 >gi|325662258|ref|ZP_08150873.1| hypothetical protein HMPREF0490_01611 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471510|gb|EGC74731.1| hypothetical protein HMPREF0490_01611 [Lachnospiraceae bacterium 4_1_37FAA] Length = 402 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 123/423 (29%), Positives = 209/423 (49%), Gaps = 44/423 (10%) Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DGLV D+ + + LG A+ PR + K+A++ T L +I+ RTG++ PVA + Sbjct: 17 DGLVLTYDDIAYGQSLGSTAKFPRDSFAFKWADEIRETTLREIEWSPSRTGLINPVAIFD 76 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++ A++HN ++ L ++ +GD + V +A +IP++ + N Sbjct: 77 PVELEGTTVSRASVHNLSIMEEL-----------ELGIGDTIQVYKANMIIPQIAE---N 122 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 P P CP C T L CT C A+ ++ FVSRD Sbjct: 123 LTRSGMAP--VPECCPACGGETEIRQVSDTKTLY----CTNP-DCGAKHIKAFSLFVSRD 175 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A NI+GL + L+ F F IR +DIF L+R + +I ++ GFG+ S NL Sbjct: 176 AMNIDGLSEATLEKFITR---GF-IRHFSDIFHLERYGE----EIRSMEGFGEKSYKNLQ 227 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 DSI K R +L + I+ LGI ++G A+ + + F ++ ++ D +L Sbjct: 228 DSIEKARTTTLPKLIYGLGIANIGLSNAKMICRA------FDYDVEKML---QADVEALN 278 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI-ENKKLVFTGTL 658 + VGD+IA+A V+++ + LL+EV I E +I V TG++ Sbjct: 279 EIQGVGDVIARAFVDYFAVEDHREEFFRLLEEV--KIPEEETTQEEQIFAGMNFVITGSV 336 Query: 659 QKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFL 715 + R++ +E + G V+ ++ KT+ +I D + SK +KA++LG+ I++E+ FL Sbjct: 337 EHFANRNEVKEVIESKGGKVTGSVTSKTNWLINNDVESTSSKNKKARELGIPIISEDTFL 396 Query: 716 FLL 718 ++ Sbjct: 397 KMI 399 >gi|254479199|ref|ZP_05092546.1| NAD-dependent DNA ligase adenylation domain subfamily [Carboxydibrachium pacificum DSM 12653] gi|214034862|gb|EEB75589.1| NAD-dependent DNA ligase adenylation domain subfamily [Carboxydibrachium pacificum DSM 12653] Length = 271 Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/269 (33%), Positives = 142/269 (52%), Gaps = 11/269 (4%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E + E+ARK + L ++I+YH+ YY +P I D EYD L R + +P+ + Sbjct: 13 EFMDREEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---K 69 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P+ P ++GGE TH +P LSL + E+++ F R+ K+ + + Sbjct: 70 TPDSPSQRVGGEPLDEFEPFTHIVPMLSLANAFTAEEIKDFDRRV-----KEAVGEVEYV 124 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +EPKIDG + + YE G F + RGDG GE+V+ ++ I +IP L ++ + VRG Sbjct: 125 VEPKIDGLSVELVYENGIFTVGSTRGDGIVGENVTPNLKTIKSIPLRLKDSVNLV--VRG 182 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSE 248 EV++ K F LN+E G +ANPRNAA+G +R+L+P R L+ F+ L + Sbjct: 183 EVFMPKASFAKLNEERAERGESLFANPRNAAAGSVRQLDPKVTAKRDLDIFIFNLQRIEG 242 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANT 277 K E L+ ++ GF V +++ T Sbjct: 243 RDFKTHVEALEFLKEQGFKVIPFIKKCTT 271 >gi|332755050|gb|EGJ85415.1| DNA ligase domain protein [Shigella flexneri 4343-70] Length = 256 Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 131/233 (56%), Gaps = 7/233 (3%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKNNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP ++ NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLG 244 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVG 228 >gi|291545735|emb|CBL18843.1| pseudouridine synthase family [Ruminococcus sp. SR1/5] Length = 610 Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 125/433 (28%), Positives = 197/433 (45%), Gaps = 44/433 (10%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 K++ L +++ YYQ + I+ + EYDAL A+ + + P + Sbjct: 168 KKMKELGEKLREASRAYYQEDREIMSNVEYDALYDTLSALEKETGIVL----ADSPTVNV 223 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G E L K H P LSL+K E LR+FI L K+DG Sbjct: 224 GYEAVEQLPKEEHERPMLSLDKTKEREALREFIGEHPTL------------LSWKLDGLT 271 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 I + YE G+ + A RG+G GE ++ R IP L ++ + +RGE I+ +DF Sbjct: 272 IVLTYENGELIKAVTRGNGIVGEVITNNARVFKNIP--LKISFKGRLVLRGEAIITYSDF 329 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-FAKGQY 255 +N E I Y NPRN SG +R+LN +IT R + F+ L + F + Sbjct: 330 EKIN-ETIGDADAKYKNPRNLCSGSVRQLN-NEITAKRNVRFYAFSLVSAEGVDFRNSRE 387 Query: 256 EMLQKMRCLGFPVNNGVR-QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 + + GF V + A T + Y+ E + T + DGLV D+ + + Sbjct: 388 VQFRWLNEQGFEVVEYRKVTAETLDEAMDYFAEAVT---TNDFPSDGLVALYDDIAYGES 444 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+ PR ++ K+A++ TRLL+I+ RTG++ PVA EPV + G ++ A++H Sbjct: 445 LGTTAKFPRNAMAFKWADEMRDTRLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVH 504 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N +K L + +GD + V +A +IP++ + + + P C Sbjct: 505 NISIMKEL-----------KLGIGDTIRVYKANMIIPQIAENLTGSGNA-----PIPHTC 548 Query: 435 PIC-QSRVVRDLN 446 P C Q VV+ N Sbjct: 549 PACGQETVVKKEN 561 >gi|256829851|ref|YP_003158579.1| DNA ligase (NAD(+)) [Desulfomicrobium baculatum DSM 4028] gi|256579027|gb|ACU90163.1| DNA ligase (NAD(+)) [Desulfomicrobium baculatum DSM 4028] Length = 615 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 174/726 (23%), Positives = 320/726 (44%), Gaps = 151/726 (20%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKI 78 E L + ++ ++D Y + P++ D++YD L R R DP+ P L+++ Sbjct: 10 EAHRLVERLAEYNDAYRR-GAPLVGDAQYDLLLARL-----------RELDPDHPFLHRV 57 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 E ++ H +P LS +K + E+L +F+ R+ + + + + + + PK+DG Sbjct: 58 EPETFSGKREIRHPVPMLSTDKAYTSEELERFVARVEKEAGEIGVSEVRYRVTPKLDG-- 115 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIR--AIPTIPRVLSLNIPEIIEVRGEVYISKN 196 + R + FV RG+G SG +VS+ IP R + GE+ I ++ Sbjct: 116 LAGRDDGTFFV---TRGNGESGYEVSSAFAKGMIPLGGRGRGV---------GEMVILQS 163 Query: 197 DFLA-LNDEMIAVGRKPYANPRNAASGIL---------RRLNPTDITRYLNFFVHGLGKT 246 F L+D + +PRN GI+ ++ + R++ + Sbjct: 164 YFQEHLSD--------AFEHPRNLVVGIVSSDTVNELAKKALADEAVRFVPY-------- 207 Query: 247 SEI--FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 +E+ + E+LQ+M L + + + + Y +DG+V Sbjct: 208 AELPSWEGSGAELLQRMDAL-----------------------TEELSAQVDYPLDGMVV 244 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 +V + +++ +G + RW I+ K + A T + + Q+GRTG +TPV +EPVN+ Sbjct: 245 EVVDEDVRRTMGATSHHYRWQIAVKRKGETALTVVTGVVWQVGRTGKVTPVLMVEPVNVS 304 Query: 365 GALITNATLHNEDYI--KGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 GA I T HN + KGL G + + R+GEVIPKV ++V Sbjct: 305 GATIRRVTAHNAGLLEKKGLGP-------------GAEIEIIRSGEVIPKVEAVLV---- 347 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P A + P+ CP C + + R+ + L+ + C Q ++ ++H+ + N Sbjct: 348 PAAT--TLPTACPSCGAALEREND----FLLCRNE-----HCPDQVVQTIEHWF-KTLGN 395 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 + G++ ++ +S +L++ + +GFG V NL +++ Sbjct: 396 ADWFGRKTVEKMVRS-----------GYDSLEKVYELGEDDF-RAMGFGPVLSGNLAEAV 443 Query: 543 --NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 ++ R + RF+ +LGI +G +R L + + + +++ + + + Sbjct: 444 YLSRTREVEDWRFLAALGIEDLGKGDSRKLLEQF--------RLQDLLTVSRE---RIEA 492 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKE-------VSPSIGRHEKNVSSEIENKKLV 653 V G I A +I R + V L+ + P+ EK S + K +V Sbjct: 493 VHGFGAITAASIA------RGLERVGPTLRHLLDLGFRIMPTGAAREKVTDSPLAGKHVV 546 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEE 712 FTG ++ R QE GA+V + ++ KTD +I G+N G SKL KA+Q G I+ E+ Sbjct: 547 FTGKMRG-SREDMQEEARAQGALVQSAVNSKTDFLICGENVGASKLAKARQFGTAILQED 605 Query: 713 QFLFLL 718 ++L L+ Sbjct: 606 EYLRLI 611 >gi|118602318|ref|YP_903533.1| DNA ligase (NAD(+)) [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166216237|sp|A1AVV5|DNLJ_RUTMC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|118567257|gb|ABL02062.1| DNA ligase (NAD(+)) [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 614 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 170/693 (24%), Positives = 301/693 (43%), Gaps = 114/693 (16%) Query: 36 YQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK-IGGE-MNLSLFKVTHSI 93 Y+ KPII D +YD + + D ++ DP+ L K I E + S KV Sbjct: 20 YRAGKPIISDQDYDFI----------YLDALKNRDPDNLLFKFIETEGQSFSEEKVLLPE 69 Query: 94 PTLSLEKIWNIEDLRKFITRIYRFWQK--KDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 LS++K ++ +++ K+I R+ + + D ++I PK+DG ++ G +Y Sbjct: 70 AMLSIDKAYSWDEISKWIKRLEKSAMQISLDLSAIQIKATPKLDGFS---GFDDGSRLYT 126 Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211 RGDG G D+S + N E GE+ I K+ F + +A Sbjct: 127 --RGDGKKGSDISRVFER-----GLCVFNDAERGLGAGEIVIKKSYF----KKYLA---H 172 Query: 212 PYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG 271 + PRN F L K + + Q ++ K L P Sbjct: 173 SFEYPRN--------------------FQASLIKEKALDEQAQKAIIDKA-ALFIPFIKL 211 Query: 272 VRQANTFHGIVSYYNEMKS-IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 + +V+ ++++ + + + +D+DG+V++ L+ Q+G + RW I+ K Sbjct: 212 PTWSGLVAELVAKFDQIVAQVLVMVDFDVDGVVFEAINTDLKTQMGANRKFHRWQIAFKE 271 Query: 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMR 390 + +A ++L++ Q+GR+G +TPV LEP + GA I AT HN +K Sbjct: 272 NKDKAHVKVLNVIPQVGRSGKITPVVELEPTLLSGATIMRATGHNYGLVK---------- 321 Query: 391 GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTG 450 + + VG V + R+G VIPK++ ++ P P CP C +V + T Sbjct: 322 -EQGLGVGSVVELTRSGLVIPKIIFVL------KPMPVDIPDNCPSCDKPLVWKSDFLT- 373 Query: 451 KLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADI 510 C C AQ + ++ +F A N +G G ++ + A IR + I Sbjct: 374 -------CINHKNCPAQIIGKMAYFFKILANN-DGFGIATIEKLY-----AHDIRSVSQI 420 Query: 511 FTLQRRQQTSTTKIENI--LGFGDVSVTNLYDSINKRRNISLE--RFIFSLGIRHVGAEI 566 + L IE++ +GFG+ + NL + +N+ + +E RF+ + G+ +G Sbjct: 421 YALN---------IEDLVTIGFGEKTSMNLINQLNRSVSEQVEDWRFLAAFGMHRMGLGN 471 Query: 567 ARSLAKYYLSYQNF---AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNIC 623 +L K + F +EI NI L G II Q ++ +I Sbjct: 472 CENLLKSHHLNDIFDLNLKEIANIDGF----------AELTGQIIVQGLISIADEFNHIY 521 Query: 624 AVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSR 683 L+ + + + + ++ E+ +KK+VFTG + R +++ +G VS +S Sbjct: 522 QYGFNLE--TTILTKDLQTLTHELFDKKIVFTGKMNH-SRDDMKKHAKSIGIKVSTSISA 578 Query: 684 KTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFL 715 K D +++GD G K++ A++ GV +M E +L Sbjct: 579 KIDYLVIGDKVGQKKIKDAEKFGVVVMTETDYL 611 >gi|119945995|ref|YP_943675.1| DNA ligase (NAD(+)) [Psychromonas ingrahamii 37] gi|166216251|sp|A1SX61|DNLJ_PSYIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|119864599|gb|ABM04076.1| DNA ligase (NAD(+)) [Psychromonas ingrahamii 37] Length = 649 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 167/705 (23%), Positives = 304/705 (43%), Gaps = 121/705 (17%) Query: 33 DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP-LNKIGGEMNLSLFKVTH 91 + +Y+ ++ II DS YDA F + +P+ P L + E+ V Sbjct: 50 NAFYRSAEQIINDSTYDA-----------FLSEFSTYNPDHPYLLTVEPEVLADSKTVPL 98 Query: 92 SIPTLSLEKIWNIEDLRKFITRIYR--FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 LS +K ++ E+++K+I R+ + ++ I + PK+DG Y+ G + Sbjct: 99 PKKMLSTDKAYSFEEIKKWIDRLLKAAIEVGVSESEIQIKVTPKLDGYA---AYDDGISL 155 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF-LALNDEMIAV 208 Y RGDG G+D++ + + GE+ I K+ F L+D+ Sbjct: 156 YT--RGDGARGQDITRAFNKGLQVANNGDRGLGP-----GEIVIKKSYFDTVLSDK---- 204 Query: 209 GRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM----RCL 264 + N RN + I I K E +QK C+ Sbjct: 205 ----FENSRNIQAAI-------------------------IAEKKVDESIQKAIDVGACV 235 Query: 265 GFP---VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 FP + N + +V + + ++ + S + YDIDG+V +V +L++ +G Sbjct: 236 FFPFLSLENWIGHYTEI--LVDFESIVEKMWSAVDYDIDGVVLEVTNETLKEHMGATRHH 293 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 RW I+ K + A ++L++ Q RTG +TPVA LEP + GA I+ AT+H+ + +K Sbjct: 294 HRWQIAFKVNAESAEVKVLNVTPQTSRTGRVTPVAELEPTKLSGATISRATVHHYNMVK- 352 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 + G V + R+G VIPK+ +I A CP C + + Sbjct: 353 ----------TNGVGPGAIVQLVRSGLVIPKIEKVI------KAVEPQLAKECPSCGTHL 396 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 + + + LV C C AQ L HF + N +G G + ++ + Sbjct: 397 IWE----SDHLV----CPNKTDCPAQTENTLVHFF-KTLGNNDGFGPKVIEKLHE----- 442 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE--RFIFSLGI 559 F I+ +I+ L++ S GFGD + NL + + R++ +E RF+ + G+ Sbjct: 443 FGIKKIHEIYELKQESFVS-------FGFGDKTAQNLVEQLQVSRDVEIEDWRFLAAFGV 495 Query: 560 RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 + L +++ ++++ +D L+++ + A AIVE N Sbjct: 496 SRLAGGNCEKLLQHH--------SLDSLFEATVED---LVQLDGFAQVSADAIVEGLANI 544 Query: 620 R-NICAVEALLKEVSPSIGRHEKNVS-SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 + + AL ++ + EK+ + + K +VFTG + + R ++ LGA V Sbjct: 545 KEEFLKLSALNFNLTITPKASEKSPGETPVFGKIIVFTGAMTQGSRGDMEKQAKALGAKV 604 Query: 678 SAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFLFLLQQY 721 + ++ KT +++ GD G+ K+ A+ GV++++E +L L+ Y Sbjct: 605 AKSVTGKTSLLVTGDKVGANKINAARDKGVQVLSELDYLALISTY 649 >gi|257793288|ref|ZP_05642267.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781] gi|257787260|gb|EEV25600.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781] Length = 245 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 130/248 (52%), Gaps = 14/248 (5%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 EL L + SY YY P + DSEYD L I P+ + P ++G Sbjct: 10 ELHDLLNQYSYE---YYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV---RVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 GE S KV H P LSL +N +DLRKF RI ++ ++ + E KIDG + Sbjct: 64 GEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRI-----REQIGNVGYMCELKIDGLAV 118 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 +++Y G FV RGDG +GED++ ++ I IP L + P +EVRGE Y+ + FL Sbjct: 119 SLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIP--LKMKEPLNVEVRGEAYMPRRSFL 176 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEML 258 LN+E + +ANPRNAA+G LR+L+ R L+ F++ + ++ A+ Q E L Sbjct: 177 RLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEAL 236 Query: 259 QKMRCLGF 266 ++ LGF Sbjct: 237 DELDKLGF 244 >gi|330995011|ref|ZP_08318931.1| DNA ligase [Gluconacetobacter sp. SXCC-1] gi|329757924|gb|EGG74448.1| DNA ligase [Gluconacetobacter sp. SXCC-1] Length = 239 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 82/211 (38%), Positives = 117/211 (55%), Gaps = 5/211 (2%) Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS--IFFTLEPKIDGTMITIRYEKGKF 148 H +P LSL+ +++ E+ FI+RI RF ++ + + F EPKIDG I++ YE G+F Sbjct: 14 HMVPMLSLDNVFSREEFEGFISRIARFLGLDEEQARQLSFVAEPKIDGLSISLTYEHGRF 73 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 V RGDG GEDV+A +R + IP L P++IE+RGEV++SK FL LN Sbjct: 74 VRGTTRGDGTEGEDVTANLRTLRDIPDQLPAPCPDVIEIRGEVFLSKQAFLELNAAQERA 133 Query: 209 GRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266 G +P+ANPRNAA+G LR+L+ IT R L+ F + G S A + L ++ GF Sbjct: 134 GDRPFANPRNAAAGSLRQLD-AGITARRPLSLFAYAAGYCSAPLAATHHGYLAQLAAWGF 192 Query: 267 PVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 VN Q ++ + RS L Y Sbjct: 193 RVNPLSTQVKDAGAAEAFMERLTLERSALDY 223 >gi|6179416|emb|CAB59902.1| DNA ligase [Campylobacter jejuni] Length = 245 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 130/236 (55%), Gaps = 19/236 (8%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE-DPNGPLNKIGGEMNLSLFKVTHS 92 YY+ +P+ D EYDAL R AF + + E + P KI + K+ H Sbjct: 19 AYYEKDEPLASDEEYDALIREL----RAFEEQNKDEISKDSPTQKIAPTIQSEFKKIAH- 73 Query: 93 IPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152 L+++W++ED+ F R W K+ F +EPK DG + + YE GK V A Sbjct: 74 -----LKRMWSMEDV--FDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSGA 126 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 RGDG GED++ + I IP+ ++N E IE+RGEV I K+DF +N++ + + Sbjct: 127 TRGDGEVGEDITLNVLEIDNIPK--TINYKEKIEIRGEVVILKDDFEKINEKRALLNQSL 184 Query: 213 YANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGF 266 +ANPRNAASG LR+L+ T IT R L F+ G+G+ + F K E++Q +R LGF Sbjct: 185 FANPRNAASGSLRQLD-TSITKERNLKFYPWGVGENTLNFTK-HSEVMQFIRELGF 238 >gi|221134260|ref|ZP_03560565.1| DNA ligase (NAD(+)) [Glaciecola sp. HTCC2999] Length = 643 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 170/729 (23%), Positives = 318/729 (43%), Gaps = 135/729 (18%) Query: 14 IEQARKELSSLEQEISYHD--DCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +E+A+ + EQ I+ + + Y+ P++ D+ YD H ++ +P Sbjct: 25 LEEAQPTSWTDEQLIAVLEATNACYRAGFPLVEDAFYD----------HHLLSALQAREP 74 Query: 72 NGP-LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT- 129 + P L K+ E+ +S +T LS +K ++I ++ K++TRI + D+ SI + Sbjct: 75 DHPFLLKVEPEI-VSGKTITLPQKMLSTDKAYSITEIEKWVTRIKK---AADELSIPHSD 130 Query: 130 ----LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVS-ACIRAIPTIPRVLSLNIPEI 184 + PK+DG Y+ G +Y RGDG G+D++ A R + N E Sbjct: 131 VNIRITPKLDGYA---AYDDGNTLYT--RGDGVRGQDITRAFTRGLAVA------NQGER 179 Query: 185 IEVRGEVYISKNDF-LALNDEMIAVGRKPYANPRNAASGIL--RRLNPTDITRYLNFFVH 241 GE+ ISK F L+D+ + N RN + I+ +++ P+ + Sbjct: 180 GLGPGEIVISKQYFDTFLSDQ--------FENSRNIQAAIIAEKKIEPSVV--------- 222 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNE-----MKSIRSTLP 296 + +Q C+ +P + G++ E ++ I + Sbjct: 223 --------------KAIQDEACVFYPF----ALLPNWTGLIDVLAEDVEARIEPIWQAVD 264 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 YDIDG++ + ++ LG RW I+ K ++ A +L + Q RTG ++PVA Sbjct: 265 YDIDGVILETTHPDIKAHLGATRHHHRWQIAFKVNDESAEVEVLSVTPQTSRTGRVSPVA 324 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 L P + GA I+ AT+H+ + ++ + G V + R+G VIPK+ + Sbjct: 325 ELVPTKLSGATISRATVHHYNMVQ-----------SNGVGPGAIVQLVRSGLVIPKIEKV 373 Query: 417 I--VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 I V + PDA CP C S ++ + + L+ C C AQ+ L H Sbjct: 374 ITAVTPQLPDA--------CPSCHSHLIWEAD----HLI----CPNKNDCPAQRENTLVH 417 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F + N +G G + ++ ++ ++ DI+ L + GFG+ + Sbjct: 418 FF-KTLGNNDGFGPKVVEKLCQN-----GVKHIHDIYALGPVDLMA-------WGFGEKT 464 Query: 535 VTNLYDSINKRRNISLE--RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 NL + +N R++++E RF+ + GI +G L +++ + F ++ Sbjct: 465 ALNLVEQLNVSRSVAIEDWRFLAAFGITRLGGGNGEKLLQHHTLSELFDLTVD------- 517 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRN-ICAVEALLKEVSPSIGRHEKNVSSEIE-NK 650 +++ + + A+AIVE N + V L + + E +++ + K Sbjct: 518 ----AMVEIDGFAQLSAEAIVEGLANVKTEFFKVYELGFNLIVTPKLSESDLADTVLFGK 573 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIM 709 ++VFTG++ R +++ LGA V +S T +I GD G+ K+ A+ GV ++ Sbjct: 574 QVVFTGSMTSGSRSDMEKHAKTLGAKVGKSVSGNTTYLITGDKVGANKINAARDKGVTVL 633 Query: 710 NEEQFLFLL 718 E ++L ++ Sbjct: 634 TELEYLAMI 642 >gi|300714635|ref|YP_003739438.1| NAD-dependent DNA ligase [Erwinia billingiae Eb661] gi|299060471|emb|CAX57578.1| Putative NAD-dependent DNA ligase [Erwinia billingiae Eb661] Length = 563 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 153/655 (23%), Positives = 267/655 (40%), Gaps = 135/655 (20%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A + +A +E+++LE ++S DD YY+ + + D YDAL + + H F A D Sbjct: 21 AWTPARAEQEMNALENQLSAWDDAYYRAGEQKVPDDRYDALALKYQSWQHCF---APGSD 77 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P G KV H + + ++K+ + + L +++ W + Sbjct: 78 LRQPALARNG-------KVLHPVAHVGVKKVADQQALSRWMAGKDALW-----------V 119 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y++GK RG+G GED + R IP IP+ ++L ++ ++GE Sbjct: 120 QPKVDGVAVTLHYKRGKLAQVISRGNGLQGEDWTEKARFIPDIPQQIALGSDSLV-LQGE 178 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +Y+ D + + + G N R +G +RR P+D L F+ Sbjct: 179 LYLKMTD----HQQTLLGG----LNARATVAGAMRRNAPSDTLNRLGIFIWAWPDGPATL 230 Query: 251 AKGQYEMLQKMRCLGFPV----NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 E ++++ GFP+ + VR A G + E + LP+ DG+V Sbjct: 231 ----RERIERLSEAGFPMMGEWSKPVRSAEEVAG----WRE-RWFAQPLPFVTDGVVVHS 281 Query: 307 DEF-SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 Q GE A W ++ K+ +T + +D IGRTG ++ V L PV + Sbjct: 282 QPVKGAYWQPGENA----WSVAWKYPPATVTTEVRSVDFPIGRTGKISTVLNLVPVKLDD 337 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH- 422 ++ + + + + D I GD+V V AG+ IP++ +++ V +R Sbjct: 338 KQVSRVNVGSFNRWREAD-----------IVAGDQVAVSLAGQGIPRLDEVVWRVADRTL 386 Query: 423 ---PDA---QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 PDA P S S P+C+ +++ L +G+ AA +G + Q++ Sbjct: 387 PELPDATLFHPLSCFSLTPVCRQQLLARLVWLSGR--AALTLSGASESTWQRI------- 437 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 + QL F TL + ++ I G Sbjct: 438 ---------MQSGQLTHLFS-------------WLTL------TAEQLSQIAGITPARAN 469 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 LY N+ +R++ +LG+ N A + A ++D+W Sbjct: 470 QLYHQFNQTHQQPFKRWVRALGV----------------PVPNKA-----LDALDDDNWQ 508 Query: 597 SLI--------RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG-RHEKN 642 SL+ R+P +G+ A IV F Q+P + L + SI +HE N Sbjct: 509 SLLSRKVADWQRLPEIGERRAGQIVTFLQHPDVQALIAFLSTHLQQSISVQHEGN 563 >gi|307543787|ref|YP_003896266.1| NAD-dependent DNA ligase LigB [Halomonas elongata DSM 2581] gi|307215811|emb|CBV41081.1| NAD-dependent DNA ligase LigB [Halomonas elongata DSM 2581] Length = 561 Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 150/609 (24%), Positives = 256/609 (42%), Gaps = 103/609 (16%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 A +EL++L + + Y + + D YD + R +A FPD+ S DP L Sbjct: 28 HAERELAALHDRLDAWERAYRRNGSSPVSDDIYDQAQARFEAWQDCFPDI--SVDPAPTL 85 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 + GE+ +H +P L K+ ++ + ++ R +DD L+PK+D Sbjct: 86 DPPDGEL-------SHPVPQSGLAKLDDVVEAGAWLAR-------RDD----VWLQPKVD 127 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ YE+G+ A RGDG SG+D +A R IP +P L + + +RGE+Y Sbjct: 128 GVAVTLVYEQGELSQAISRGDGLSGQDWTAKARFIPDVPDRLPTQ--QRLVLRGELY--- 182 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQ 254 L L+ + A + A R+ +G L R + R + FV K Sbjct: 183 ---LKLDGHVQA--ERGAAGARSVVAGWLARDSLDGAKARQIGLFVWDWPDGP----KAL 233 Query: 255 YEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L ++ LGFP + A + ++S ++ R+ LP+ DG+V K Q+ Sbjct: 234 PERLARLAELGFPDTTDWTLPAESLEAVLSQRDDW--YRTPLPFATDGVVLKQG----QR 287 Query: 314 QLGERARS---PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 GE AR+ P W + K+ + R+ ++ ++GRTG +TP+ L P + G I Sbjct: 288 PGGE-ARTEAPPDWAAAWKYPPRSVLARVRGVEFRVGRTGRITPLLHLVPETLAGRSIRR 346 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN-ERHPDAQPFS 429 T+ + + L DIR GD V + AG+ IP++ + P+ +P Sbjct: 347 VTVGSLGRWQTL-----------DIRPGDVVTISLAGQTIPRLDSVAWRAAERPEVEP-- 393 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P + +P G C Q LERL +A ++ G+G Sbjct: 394 ----PPASDYNALSCWHPSPG-------------CKGQFLERLAWLGGPEALDLAGVGAG 436 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++S A ++ D +L S ++ G G+V L + R Sbjct: 437 T----WRSLVEAGLVKDLLDWMSL------SAETLQAASGIGEVRGRQLVEVFATARQRP 486 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 + ++ +LG GA + A E + + + + + W +L P VG+ A Sbjct: 487 FDAWLEALGAPS-GA------------LADEATEWSTLASRDLEQWRAL---PEVGETRA 530 Query: 610 QAIVEFYQN 618 +A+ +F+ N Sbjct: 531 EALHDFFAN 539 >gi|327482626|gb|AEA85936.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri DSM 4166] Length = 553 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 134/549 (24%), Positives = 229/549 (41%), Gaps = 87/549 (15%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR+E+ L+ +++ DD Y++ + ++ D YD + + D F + DP L Sbjct: 27 RARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCFVGTGAAPDP---L 83 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 GG + H I L K+ + + + +I R W ++PKID Sbjct: 84 QDAGGPLR-------HPIRQTGLVKLADEQAVATWIARRRDLW-----------IQPKID 125 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ Y G A RGDG +G+D +A R + IP L +P+ + ++GE+Y Sbjct: 126 GVAVTLVYRHGALQQAISRGDGLTGQDWTANARRLAAIP--ARLAVPDEVILQGELYWRL 183 Query: 196 NDFL-ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 + + A + A GR A A++G+ R D + FV + G Sbjct: 184 DRHVQASHGSAGARGRVAGAM---ASNGLDR-----DTAARIGLFVWD-------WPNGP 228 Query: 255 YEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 M L ++ LGFP Q ++ E R LP+ DG+V + + Sbjct: 229 DSMNARLGQLAALGFPDTQAFSQPVETLEHARHWRE-HWYRQALPFATDGVVLRQE---- 283 Query: 312 QKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ ER ++ P W + K+ ++A T + D++ +IGRTG +TP+ +L PV + + Sbjct: 284 QRPPAERWQAEPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDDRRVRT 343 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 +L + D + L D+R GDRV V AG IP++ ++ RH + P + Sbjct: 344 LSLGSLDRWQAL-----------DVRPGDRVAVALAGHSIPQLDSVVW--RHTERAPVAA 390 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P +P+ + R G C Q L RL R +EG+G Sbjct: 391 P--------------DPRRYHPDSCWRPAPG--CDQQFLARLVWLGGRQGLALEGVGAGS 434 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ +P + L + +E + G G L S + R L Sbjct: 435 WQALLEAG------LLPDLLAWL----ELDAAALEQVPGIGKARANKLAASFARARQRPL 484 Query: 551 ERFIFSLGI 559 +++ +LG+ Sbjct: 485 AQWLKALGL 493 >gi|145627933|ref|ZP_01783734.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.1-21] gi|145640788|ref|ZP_01796371.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] gi|144979708|gb|EDJ89367.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.1-21] gi|145274714|gb|EDK14577.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21] Length = 278 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 89/277 (32%), Positives = 143/277 (51%), Gaps = 21/277 (7%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S+ P + Sbjct: 5 QTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPT---QR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLE 131 +G + ++ H IP LSL+ ++ + F+ RI +D I F E Sbjct: 62 VGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGE Sbjct: 115 PKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSE 248 V++ F LN + K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 175 VFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIGIAEG 233 Query: 249 I-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSY 284 + Y LQ ++ +G PVN +R N ++ + Sbjct: 234 VDLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGF 270 >gi|330879795|gb|EGH13944.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea str. race 4] Length = 281 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/271 (33%), Positives = 139/271 (51%), Gaps = 37/271 (13%) Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NATLHN D +V R G + +GD V+++RAG+VIP+VV ++ R +A+ Sbjct: 1 MVANATLHNMD---------EVARLG--LMIGDTVIIRRAGDVIPQVVQVVAERRPENAR 49 Query: 427 PFSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDA 480 P CP+C S V R + GK A +RC G LAC AQ + + H+VSR A Sbjct: 50 AVQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRA 109 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +IEGLG + ++ + I PAD++ L+ Q I ++ GF ++S L Sbjct: 110 MDIEGLGDKTIEQLVDEK----LIGSPADLYKLKYEQ------IIDLEGFAEISSNKLLK 159 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I R +L RFI++LGI VG E A+ LA+ S Q + ++ + Sbjct: 160 AIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTY---------- 209 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKE 631 +P VG +A I F+++ N ++ALL E Sbjct: 210 LPDVGLEVAYEIHSFFEDEHNRNVIDALLGE 240 >gi|269469037|gb|EEZ80601.1| NAD-dependent DNA ligase [uncultured SUP05 cluster bacterium] Length = 398 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 114/426 (26%), Positives = 202/426 (47%), Gaps = 61/426 (14%) Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 +D+DG+V++V +L+ +G + RW I+ K + +A ++L + Q+GRTG +TPVA Sbjct: 21 FDVDGVVFEVTNENLKNYMGANRKFHRWQIAFKENKDKAQVKVLSVTPQVGRTGKITPVA 80 Query: 357 RLEPVNIGGALITNATLHNEDYIK--GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 LEP + GA I AT H+ +K GL A G + + R+G VIPK+ Sbjct: 81 ELEPTLLSGATIVRATGHHYGLVKEQGLGA-------------GSVIELTRSGLVIPKIN 127 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 ++ + P P CP C L ++ L+ C C AQ + ++++ Sbjct: 128 QVL------KSAPVKIPKLCPSCS----EALEWESDFLM----CVNHDLCPAQVIGKMEY 173 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F A N +G G ++ ++ IR + I+ L + +GFGD + Sbjct: 174 FFKILANN-DGFGIATIEKLYEH-----GIRKISQIYALSASDLSD-------MGFGDKT 220 Query: 535 VTNLYDSINKRRNISLE--RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 TNL + + + N +E RF+ + G+ +G +L K Y + F + I A + Sbjct: 221 STNLVNQLKRSTNEQIEDWRFLAAFGVVRMGTGNCENLLKSYPLNEIFELNLEQISAIDG 280 Query: 593 DDWLSLIRVPLVGDIIAQAIV---EFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN 649 ++ AQ IV + Q N+ + E++ S+ ++ + + + Sbjct: 281 -----------FAELTAQMIVTGLKIIQTEFNLLSRYRFNLEIT-SLQKNLEEFTHVLFG 328 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKI 708 KK+VFTG +Q R K +++ +G + +S KTD ++VG+ G K+E A++ GVK+ Sbjct: 329 KKIVFTGKMQG-SRDKMKKHAKSIGIKILTSVSAKTDYLVVGEKVGQKKIESAKKFGVKV 387 Query: 709 MNEEQF 714 ++EE + Sbjct: 388 LSEEDY 393 >gi|229593084|ref|YP_002875203.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens SBW25] gi|257096558|sp|C3K3F7|LIGB_PSEFS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|229364950|emb|CAY53062.1| putative exported DNA-ligase protein [Pseudomonas fluorescens SBW25] Length = 554 Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 146/625 (23%), Positives = 248/625 (39%), Gaps = 113/625 (18%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 ++AR +S+L ++I DD Y++ + + D YD ++R FP A + PN P Sbjct: 24 DEARAHVSTLAEQIRQWDDSYHRLGQSPVSDELYDQARQRLAQWHQCFP--APTATPNTP 81 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 L G H + LEK+ + + ++ W ++PK+ Sbjct: 82 LASSRGAQ-------PHPVAHTGLEKLLDEHAVDAWLGTRKDVW-----------IQPKV 123 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +T+ Y++G+ RGDG G D SA R IP I V L P + ++GE+Y Sbjct: 124 DGVAVTLVYQQGRLRQVISRGDGVMGHDWSASARKIPGI--VQQLPDPIDLVLQGELYWR 181 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAK 252 +D + + N R+ +G++ R L TD + FV + F Sbjct: 182 LDDHVQSASGGL--------NARSKVAGLMNRKHLGDTDAAG-IGLFVWAWPQGPAAFT- 231 Query: 253 GQYEMLQKMRCLGF--------PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 E L ++ GF P+ N A H +Y LP+ DG+V Sbjct: 232 ---ERLSTLKRWGFTDTQRFSQPIRNISEAA---HWRAYWYGH------PLPFASDGVVL 279 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + ++ + +P W + K+ +A + D+ +IGRTG +TP+ LEPV + Sbjct: 280 HQAQHAPAERW--QVSTPYWAAAWKYPTTKALALVRDVQFKIGRTGRITPMLELEPVRLD 337 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 I+ + + + L DIR GD V + AG+VIP++ ++I+ Sbjct: 338 DRQISRVSAGSLKRWQSL-----------DIRPGDHVSISLAGQVIPRLDEVIL------ 380 Query: 425 AQPFSFPSFCPICQSRVVRDLN-PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 +S DL P GK A C Q L RL + Sbjct: 381 -------------RSSTRADLPVPNPGKFHALSCWQLDPGCEEQLLARLSWLSGNQGLAL 427 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G++ ++ A + D TL T ++ NI GFGD + + DS + Sbjct: 428 PHIGRETWSVLIQAGLIAGFL----DWLTL------DTAELANIDGFGDRTRARVVDSFH 477 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R +++ +LG+ AR+ N + ++A + WL+ + Sbjct: 478 SARQRPFAQWLKALGV----PPAARN---------NLEGDWQTLVARDTQAWLA---IDG 521 Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL 628 +G A + F+++P E L Sbjct: 522 IGPGRAAQLSAFFRDPHVQALAETL 546 >gi|325474099|gb|EGC77287.1| hypothetical protein HMPREF9353_01637 [Treponema denticola F0402] Length = 437 Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 122/441 (27%), Positives = 209/441 (47%), Gaps = 63/441 (14%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN-K 77 K + LE+ I H D YY ++P I D+E+DAL A+ DP L Sbjct: 5 KRILDLEKTIKKHQDLYYN-AQPEISDAEFDALWDELKAL-----------DPQNKLFFT 52 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + E K H IP S EK + + ++ F + + ++ K+DG Sbjct: 53 VPLESTDGFAKSEHIIPMGSQEKAADPPSFEAWALKM-PFKE--------YIVQYKMDGA 103 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + ++YE+G FV A RGDG G+D++ + + + + +++N G Y +K Sbjct: 104 SLELQYEEGHFVRAVTRGDGKIGDDITENVLKMKGLIKDITVN-------EGPAYGTKPF 156 Query: 198 FLALNDEMIAVGR------KPYANPRNAASGILRRLNPTDITRYLNFFVH-------GLG 244 + E+I + K AN RNAA+G++++ N ++ +LN F + G Sbjct: 157 SGGIRCEVIMLRSIHQKYFKDKANCRNAANGLMKKKN-GELCEHLNLFAYDAVQGSIGNP 215 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 T + K + E L ++ GF V+ + ++ Y + IR +L YDIDGLV Sbjct: 216 FTGDAPFKTESEKLVWLKEAGFNCVE-VKYCKSIDEVIEYRAHVMDIRPSLDYDIDGLVI 274 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDI-QIGRTGILTPVARLEPVNI 363 K D ++ + +RAR P I+ KF+ ++A T L +I+ + G T TP+A +EPV + Sbjct: 275 KND--TIDPEDMKRAR-PEKQIAFKFSLEEAVTVLKEIEWSESGAT--YTPIALIEPVRL 329 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G + A+L N + I+ L ++++G RV+V + GE+IPK+ + E P Sbjct: 330 AGTTVKRASLANPNIIRAL-----------NLKIGSRVVVTKRGEIIPKIEALA--ENPP 376 Query: 424 DAQPFSFPSFCPICQSRVVRD 444 + + +P C +C S + + Sbjct: 377 NVKEIEYPDTCSVCGSPLTNE 397 >gi|70733074|ref|YP_262847.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens Pf-5] gi|123761963|sp|Q4K4I6|LIGB_PSEF5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|68347373|gb|AAY94979.1| DNA ligase, NAD-dependent, putative [Pseudomonas fluorescens Pf-5] Length = 556 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 144/583 (24%), Positives = 243/583 (41%), Gaps = 100/583 (17%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +A E+++L+Q++ D YY+ + ++ D YD ++R FP R+ D Sbjct: 25 VPRATDEITALQQQLQRWDSSYYRDGRSLVADELYDQARQRLLTWRQCFPQAPRAMD--Q 82 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 PL GG + H IP +EK+ + + ++ + +DD +PK Sbjct: 83 PLLGAGG-------SIRHPIPHTGVEKLADANAVTGWL-------KGRDD----IWAQPK 124 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y +G+F A RGDG G D + I IP+ L P + ++GE+Y Sbjct: 125 VDGVAVTLIYHRGQFQQALSRGDGVHGHDWTRAAWQIEAIPK--RLPRPVDLLLQGELY- 181 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252 L E R RN +G + R T + FV + + Sbjct: 182 -------LRLEQHVQARSGSLKARNRVAGWMARKQLTAAEAAQIGLFVWDWPQGPATLS- 233 Query: 253 GQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 E L+++ LGF R F + + RS LP+ DG++ + Sbjct: 234 ---ERLEQLADLGFAEPREYSRPVGGFADAQQW--RARWYRSPLPFASDGIILRQS---- 284 Query: 312 QKQLGER--ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++ ER A++P W+ + K+ Q + +D +IGRTG +TP+ +EPV + I Sbjct: 285 RRPAAERWQAKAPYWIAAWKYPYAQVLASVRQVDFRIGRTGRITPLLEIEPVTLDDRQIR 344 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE------RHP 423 +L + + L DI GD+V + AG IP++ ++++ + P Sbjct: 345 RVSLGSLQRWRSL-----------DIVPGDQVAISLAGLSIPRLDEVVLRSTLRQSIQPP 393 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 F F S C P G C Q L RL S+ N+ Sbjct: 394 READFHFLS-C----------WQPSPG-------------CEEQFLARLTWLSSKQGLNL 429 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 + +G + ++ I+ D TL + ++ NI GFGD S L +S++ Sbjct: 430 QNIGSRTWARLVETG----RIKGLLDWLTLDQ------AELANIAGFGDRSSKRLLESLH 479 Query: 544 KRRNISLERFIFSLGIRHVG-AEIA---RSLA-KYYLSYQNFA 581 R R++ +LGI G A+++ ++LA K L +QN A Sbjct: 480 SARQQPFPRWLKALGIPPSGSADLSGPWQALAMKNSLDWQNEA 522 >gi|166226374|sp|A4VRF3|LIGB_PSEU5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 556 Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 132/549 (24%), Positives = 228/549 (41%), Gaps = 87/549 (15%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR+E+ L+ +++ DD Y++ + ++ D YD + + D F + DP L Sbjct: 30 RARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCFVGTGAAPDP---L 86 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 GG + H + L K+ + + + +I R W ++PKID Sbjct: 87 QDAGGPLR-------HPVRQTGLVKLADEQAVATWIARRRDLW-----------IQPKID 128 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ Y G A RGDG +G D +A R + IP L +P+ + ++GE+Y Sbjct: 129 GVAVTLVYRHGALQQAISRGDGLTGHDWTANARRLAAIP--ARLAVPDEVILQGELYWRL 186 Query: 196 NDFL-ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 + + A + A GR A A++G+ R + + FV + G Sbjct: 187 DRHVQASHGSAGARGRVAGAM---ASNGLDR-----NTAARIGLFVWD-------WPNGP 231 Query: 255 YEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 M L ++ LGFP Q ++ E R LP+ DG+V + + Sbjct: 232 DSMNARLGQLAALGFPDTQAFSQPVETLEHARHWRE-HWYRQALPFATDGVVLRQE---- 286 Query: 312 QKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ ER ++ P W + K+ ++A T + D++ +IGRTG +TP+ +L PV + + Sbjct: 287 QRPPAERWQAEPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDDRRVRM 346 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 +L + D + L D+R GDRV V AG IP++ ++ RH + P + Sbjct: 347 LSLGSLDRWQAL-----------DVRPGDRVAVALAGHSIPQLDSVVW--RHTERAPVAA 393 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P +P+ + R G C Q L RL R +EG+G Sbjct: 394 P--------------DPRRYHPDSCWRPAPG--CEQQFLARLVWLGGRQGLALEGVGAGS 437 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ +P + L + +E + G G L S + R L Sbjct: 438 WQALLEAG------LLPDLLAWL----ELDAAALEQVPGIGKARANKLAASFARARQRPL 487 Query: 551 ERFIFSLGI 559 +++ +LG+ Sbjct: 488 AQWLKALGL 496 >gi|146284243|ref|YP_001174396.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri A1501] gi|145572448|gb|ABP81554.1| DNA ligase, NAD-dependent, putative [Pseudomonas stutzeri A1501] Length = 597 Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 132/549 (24%), Positives = 228/549 (41%), Gaps = 87/549 (15%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR+E+ L+ +++ DD Y++ + ++ D YD + + D F + DP L Sbjct: 71 RARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRCFVGTGAAPDP---L 127 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 GG + H + L K+ + + + +I R W ++PKID Sbjct: 128 QDAGGPLR-------HPVRQTGLVKLADEQAVATWIARRRDLW-----------IQPKID 169 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ Y G A RGDG +G D +A R + IP L +P+ + ++GE+Y Sbjct: 170 GVAVTLVYRHGALQQAISRGDGLTGHDWTANARRLAAIP--ARLAVPDEVILQGELYWRL 227 Query: 196 NDFL-ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 + + A + A GR A A++G+ R + + FV + G Sbjct: 228 DRHVQASHGSAGARGRVAGAM---ASNGLDR-----NTAARIGLFVWD-------WPNGP 272 Query: 255 YEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 M L ++ LGFP Q ++ E R LP+ DG+V + + Sbjct: 273 DSMNARLGQLAALGFPDTQAFSQPVETLEHARHWRE-HWYRQALPFATDGVVLRQE---- 327 Query: 312 QKQLGERARS-PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+ ER ++ P W + K+ ++A T + D++ +IGRTG +TP+ +L PV + + Sbjct: 328 QRPPAERWQAEPHWAAAWKYPLRKALTEVRDVEFRIGRTGRITPLLQLAPVQLDDRRVRM 387 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 +L + D + L D+R GDRV V AG IP++ ++ RH + P + Sbjct: 388 LSLGSLDRWQAL-----------DVRPGDRVAVALAGHSIPQLDSVVW--RHTERAPVAA 434 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P +P+ + R G C Q L RL R +EG+G Sbjct: 435 P--------------DPRRYHPDSCWRPAPG--CEQQFLARLVWLGGRQGLALEGVGAGS 478 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ +P + L + +E + G G L S + R L Sbjct: 479 WQALLEAG------LLPDLLAWL----ELDAAALEQVPGIGKARANKLAASFARARQRPL 528 Query: 551 ERFIFSLGI 559 +++ +LG+ Sbjct: 529 AQWLKALGL 537 >gi|288575281|ref|ZP_06393611.1| DNA ligase, NAD-dependent [Neisseria mucosa ATCC 25996] gi|288568349|gb|EFC89909.1| DNA ligase, NAD-dependent [Neisseria mucosa ATCC 25996] Length = 446 Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 120/453 (26%), Positives = 188/453 (41%), Gaps = 137/453 (30%) Query: 395 IRVGDRVLVKRAGEVIPKVVDIIVNERH-------------------------------- 422 +RVGD V+V+RAG+VIP+VV +I R Sbjct: 1 MRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDDLKQQQDDLFAETPSANQTQSV 60 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ + L HF SR A + Sbjct: 61 PLHKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRAQGLIHFASRKAMD 114 Query: 483 IEGLGKQQLDFFFKSEDPA--FSIRIPADIFTLQR-RQQTSTTKIENILG-----FGDVS 534 I+GLG++Q++ ++D F+ DI TLQ+ ++ EN G GD+S Sbjct: 115 IDGLGQKQIEQLV-AQDLVRHFADLYRLDIPTLQKMKEMADKASSENENGDAETVSGDLS 173 Query: 535 --------------VTNLYDSINKRRNISLERFIFSLGIRH------------------- 561 N+ I + L RF+F+LGIRH Sbjct: 174 EPNTQTGKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFGSLEHV 233 Query: 562 -------------VGAEIARSLAKYYLSYQNFAQEINNIIAHN----------------- 591 +G +ARS+A ++ A I+ ++A Sbjct: 234 RRAPEPILACLPDIGTVVARSIAHFFAQDAQQAM-IDELLAAGVVPQTQTVTIPPARHAE 292 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEF-----------------YQNPRNICAVEALLKEVSP 634 W++ + + + AQA+ E +Q R+ ALL+ + Sbjct: 293 PQHWIARLPGFKISENKAQALWELAGKSIEGLQTDKALPADWQTWRSEAQNTALLENLKT 352 Query: 635 SIGRHEKNVSSE---------IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 + E + K V TGTL ++R +AQ + G VS +S+KT Sbjct: 353 FFAQTSSKNQDEAFSDGLNEAVAGKTFVLTGTLPTLKRDQAQALIEAAGGKVSGSVSKKT 412 Query: 686 DIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 D ++ G+ GSKLEKA LGV +++EE+ L +L Sbjct: 413 DYVVAGEAAGSKLEKANALGVAVLSEEELLAML 445 >gi|312878358|ref|ZP_07738269.1| DNA ligase (NAD(+)) [Caldicellulosiruptor lactoaceticus 6A] gi|311794859|gb|EFR11277.1| DNA ligase (NAD(+)) [Caldicellulosiruptor lactoaceticus 6A] Length = 259 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 123/230 (53%), Gaps = 9/230 (3%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E +K + L I+YHD YY P I D EYD L R + +P+ P+ P Sbjct: 3 EFIKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVF---PDSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++GG++ +V H +P LSL ++N +L F R+ + + + +E KI Sbjct: 60 TQRVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFD---YVVEYKI 116 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG + + YE G FV A RGDG+ GEDV+ ++ I +IP L +I I VRGEV++ Sbjct: 117 DGLSVALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDIS--IVVRGEVFMP 174 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 K++F+ LN E +ANPRNAA+G LR+L+P R L+ FV + Sbjct: 175 KDEFIKLNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNV 224 >gi|148244425|ref|YP_001219119.1| DNA ligase (NAD+) [Candidatus Vesicomyosocius okutanii HA] gi|166216276|sp|A5CXB8|DNLJ_VESOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146326252|dbj|BAF61395.1| DNA ligase (NAD+) [Candidatus Vesicomyosocius okutanii HA] Length = 632 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 160/692 (23%), Positives = 298/692 (43%), Gaps = 112/692 (16%) Query: 36 YQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP- 94 Y+ KPII + +YD + + ++++PN PL K + + +P Sbjct: 36 YRSGKPIISNEDYDFI----------YLATLKNKEPNNPLFKSIEPEGRAFAEEKVLLPE 85 Query: 95 -TLSLEKIWNIEDLRKFITRIYR--FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYA 151 LS++K ++ ++ K+I R+ + D N+I PK+DG ++ G +Y Sbjct: 86 LMLSIDKAYSWNEMSKWIERLEKSGMLIGLDLNAIQIKATPKLDGFA---GFDDGNRLYT 142 Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRK 211 RGDG G D+S + + + + GE+ + K+ F E V Sbjct: 143 --RGDGKKGSDISRVFKRGLCVFKDSGRGLGA-----GEIVVKKSYF-----EKYLVHSF 190 Query: 212 PYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK----MRCLGFP 267 Y PRN S ++ K + + Q ++ K + + P Sbjct: 191 EY--PRNFQSSLI--------------------KEKALDEQAQKAIIDKGALFVPFIKLP 228 Query: 268 VNNGVRQANTFHGIVSYYNEMKS-IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 + +G + +V+ + E+ S + + +D+DG+V++V L+ Q+G + RW I Sbjct: 229 IWSG-----SMTELVAKFEEIVSQVLVMVDFDVDGVVFEVINIDLKTQMGANRKFHRWQI 283 Query: 327 SHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASG 386 + K + ++L++ Q+GR+G +TPVA +EP + GA I T H+ +K Sbjct: 284 AFKENKDIVQVKVLNVMPQVGRSGKITPVAEVEPTLLSGATIVRVTGHHYGLVK------ 337 Query: 387 KVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLN 446 + + +G V + R+G VIPK++ ++ P P C C +V + Sbjct: 338 -----EQGLGIGSVVELTRSGLVIPKIISVL------KPMPVDIPDNCLSCGMPLVWE-- 384 Query: 447 PKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRI 506 + LV C C AQ + R+ +F A N +G G ++ + A +IR Sbjct: 385 --SDFLV----CVNHKNCPAQIIGRITYFFKVLANN-DGFGIATVEKLY-----AHNIRS 432 Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE--RFIFSLGIRHVGA 564 + I+TL + + +GFG+ + NL +++ + +E RF+ + G+ +G Sbjct: 433 VSQIYTLNVERLMA-------IGFGEKTSINLISQLSRSISEKIEDWRFLAAFGMHRMGL 485 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 +L K Y F + I N D + L +I Q +V I Sbjct: 486 GNCENLLKSYRLNDIFDLTLEQI---TNIDGFA----ELTAQVIVQGLVSIVDEYNQIYQ 538 Query: 625 VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRK 684 L + + + + E+ +K++VFTG + R++ +++ +G VS +S K Sbjct: 539 YNFNLD--TTVFTKDLQTLMHELFDKRIVFTGKMN-CPRNEMKKHAKLVGIKVSTTISTK 595 Query: 685 TDIIIVGDNPGS-KLEKAQQLGVKIMNEEQFL 715 D +++G G K++ A++LGV +M E +L Sbjct: 596 IDYLVIGSRVGQKKIQNAEKLGVVVMTEADYL 627 >gi|126669208|ref|ZP_01740125.1| hypothetical protein MELB17_00020 [Marinobacter sp. ELB17] gi|126626327|gb|EAZ97005.1| hypothetical protein MELB17_00020 [Marinobacter sp. ELB17] Length = 490 Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 142/554 (25%), Positives = 240/554 (43%), Gaps = 96/554 (17%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 +E+ + +D Y II DS+YDAL +LAR + + L ++ E + Sbjct: 21 IEESLERANDAYRNTDDSIISDSDYDAL----------IDELARRDPGHALLTEVESEAD 70 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS-IFFTLEPKIDGTMITIR 142 KV H IP LS EK+ +L ++ R+ Q + + ++ K+DG + R Sbjct: 71 FGAGKVRHQIPMLSTEKVKTDSELSAWVRRVESAAQNIGIRTPVLLSVTAKLDG--MAGR 128 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALN 202 + G A RGDG +G +++ + P+++ + + GE+ + ++ F Sbjct: 129 LKDGVL---ASRGDGLTGNNITHIL------PKLVVHGVGD-----GELVMIQSYF---- 170 Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMR 262 DE ++ + + +PRN +G + P + L S F + L ++ Sbjct: 171 DEHLS---EEFKHPRNVVTGAVGADTPRPAA------MKALNDHSIHFV--SFTTLTRID 219 Query: 263 CLGFPVNNGVRQANTFHGIVSYYNEMKS-IRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 + +T IV+ E++ + PY DGLV V+ L+K+LG Sbjct: 220 S----------RTDT---IVAQLPEIREYLLGNTPYPTDGLVLAVESPELRKELGSTGHH 266 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 WM++ K + A+T ++ + QIG+TG LTPV +L+ V + GA+I N T HN Sbjct: 267 HNWMVAAKTVGETATTAVVGVQWQIGKTGRLTPVIQLKKVTLSGAVIANVTGHN------ 320 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +GKV G D VG + R+GE+IP +V P S P+ CP C + Sbjct: 321 ---AGKVEEMGID--VGAMATITRSGEIIPFLVSAT-----PAPNGASLPTHCPACTEHL 370 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R + LV + C ++ RL HF FNI G +D F A Sbjct: 371 KR----RGDFLVCINN-----ECEGRRHARLHHF-----FNIIG----SIDLFGPV---A 409 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN--KRRNISLERFIFSLGI 559 I A + ++Q + + E +GFG NL + K R + R + ++GI Sbjct: 410 CDKLIAAGVRSIQEVFAITAAEFE-AMGFGPGQSANLVAELEAAKTRPVDDFRVLAAMGI 468 Query: 560 RHVGAEIARSLAKY 573 ++G ++ L ++ Sbjct: 469 SNLGRGDSKKLLRH 482 >gi|146305490|ref|YP_001185955.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina ymp] gi|172046035|sp|A4XPF7|LIGB_PSEMY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|145573691|gb|ABP83223.1| DNA ligase (NAD(+)) [Pseudomonas mendocina ymp] Length = 562 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 150/632 (23%), Positives = 249/632 (39%), Gaps = 130/632 (20%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 Q P +A+ E ++L Q+I+ DD Y+ + I D YD + R F Sbjct: 18 QAEPCPDWPDSRAQVEFAALSQQIAQWDDAYHNQGRSPIADELYDQARERLQRWQQCFAP 77 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 AR P PL G + H +P L K+ N + ++I +DD Sbjct: 78 -ARQPLPE-PLTGSAG-------PIAHPVPQTGLRKL-NDAAIGEWIG-------SRDD- 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 ++PK+DG +T+ Y +G+ A RGDG G+D SA R +P +P +PE Sbjct: 120 ---LWIQPKVDGVAVTLVYRQGRLHQAISRGDGRHGQDWSARARQLPAVP----TRLPEA 172 Query: 185 IEV--RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFV 240 +++ +GE+Y D L D A R +G++ R L+ TD + FV Sbjct: 173 LDLVLQGELYWRLEDHLQARDGG--------AGARGKVAGMMARHELSDTDGA-AIGLFV 223 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI--------- 291 E L +++ LGF A++ H Y ++S+ Sbjct: 224 WDWPDGPASMD----ERLSQLQALGF--------ADSQH----YSKPIRSVEEARQWRQH 267 Query: 292 --RSTLPYDIDGLVYKVDEFSLQKQLGER--ARSPRWMISHKFAEKQASTRLLDIDIQIG 347 R LP+ DG+V + + G R A +P W ++ K+ QA + +D +IG Sbjct: 268 WYRHRLPFASDGVVLRQGT----RPAGARWQAEAPHWAVAWKYPASQALAVVQAVDFRIG 323 Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 R+G +TPV RL+PV++ I+ L + K L D+R GD+V ++ AG Sbjct: 324 RSGRITPVLRLQPVDLDDRRISRVALGSVPTWKSL-----------DVRPGDQVAIRLAG 372 Query: 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 IP++ +I R P P P++ A +C Q Sbjct: 373 LTIPRLDSVIW--RSPHRAPVEV----------------PRSADYHALSCWRSSPSCQHQ 414 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527 RL S+ + G+G + ++ D L + Q ++++ Sbjct: 415 FQARLAWLSSKQGLALSGVGPGTWS--------SLPLQGLLDWLELDKAQ------LQSL 460 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 G G L + + R+ L++++ +LG A + ++ Sbjct: 461 PGIGPRRAAQLQQAFAQARDRPLQQWLRALG------------APPGFDAGGL-DDWPSL 507 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP 619 I DDWL R P VG A ++ F+ +P Sbjct: 508 IERQRDDWL---RRPGVGPKGADRLLAFFSHP 536 >gi|261823684|ref|YP_003261790.1| NAD-dependent DNA ligase LigB [Pectobacterium wasabiae WPP163] gi|261607697|gb|ACX90183.1| DNA ligase (NAD(+)) [Pectobacterium wasabiae WPP163] Length = 563 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 127/550 (23%), Positives = 220/550 (40%), Gaps = 89/550 (16%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 ++ KE+++L Q++ DD YY K + D YD L+ + + F P Sbjct: 34 RSNKEITALRQQLERWDDVYYTEGKSPVEDDVYDQLREQLNQWLSCFQ----------PQ 83 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 N I + + K H + L+K+ + L ++I + W ++PK+D Sbjct: 84 NAIPVRLPDN-GKQRHPVAHTGLKKVSDRGRLVQWIAQREGLW-----------IQPKVD 131 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G IT+ Y+ GK V A RG+G GED + +R IP IP +L+ P + ++GE+++ Sbjct: 132 GVAITLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLT-GAPSSLVLQGELFLKM 190 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 D + N R+ +G +RR P+ + ++ FV K Sbjct: 191 TDHRQYTQGGV--------NARSVVAGEMRRHQPSPVLSQISLFVWEWPDGP----KAMP 238 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK----SIRSTLPYDIDGLVYKVDEFSL 311 E L+K++ +GF + G H I S+ + K S LP+ DG+V + + Sbjct: 239 ERLEKLKEMGFAMTAGYT-----HAIESFADAEKWRHYWHHSPLPFVTDGVVIRQTKEPQ 293 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + R S W I+ K+ + D+ +GRTG + V +L P+ + L++ Sbjct: 294 GRYW--RNTSADWAIAWKYPPVHQVAEVTDVAFSVGRTGKIAVVLKLNPMKLDDKLVSRV 351 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQPFS 429 + + K D++ GDRV V AG+ IP++ + ER Sbjct: 352 NVGSLSRWKQW-----------DVQPGDRVSVSLAGQGIPRLDSVAWRGAER-------- 392 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ P P A C Q L RL N+ G+ + Sbjct: 393 -PALVP-----------PNEHDFHAFSCFRYSAVCQQQFLARLVWLSGEHGLNLAGM-RD 439 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + D + D+ + ++ + G GD ++Y S+ R + Sbjct: 440 GMWLRLMQHD------LLGDVLAW---LSLTEAQLNAVNGMGDKRARDIYTSLQSTRQVP 490 Query: 550 LERFIFSLGI 559 L R++ +LGI Sbjct: 491 LSRWLLALGI 500 >gi|317968248|ref|ZP_07969638.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0205] Length = 239 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 118/230 (51%), Gaps = 7/230 (3%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 QAR S L ++ YY P++ D YD L R + +A L ++ P Sbjct: 9 QARA--SELRDLLNRAAHAYYVLDAPVMEDPVYDRLYRELLDLENADASLISADSPT--- 63 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG V H I LSL+ +N ++L + R+ + ++ ++ E KID Sbjct: 64 QRVGGAPAAGFSSVRHRIGLLSLDNAFNTDELEAWYGRLLKVLDREAGTALPMVGELKID 123 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYIS 194 G + + YE G V AA RGDG GE+++A +R I ++P L L N P +EVRGE I Sbjct: 124 GNALALSYENGVLVRAATRGDGEQGEEITANVRTIASVPLRLQLENPPAWLEVRGEALIP 183 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL 243 F A+N E A G +ANPRNA +G LR+L+P + R L+FF + L Sbjct: 184 DGTFAAINSERQARGEALFANPRNACAGTLRQLDPKVVAARKLDFFAYTL 233 >gi|330501400|ref|YP_004378269.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01] gi|328915686|gb|AEB56517.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01] Length = 564 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 131/557 (23%), Positives = 224/557 (40%), Gaps = 88/557 (15%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P + +A EL +L ++I+ DD Y+ ++ D YD + R A FP Sbjct: 19 PCPNWADARAAMELGALSRQIAEWDDAYHNQGHSLVADEIYDQARGRLQAWHQCFPTA-- 76 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 L+ + + S K+ H + L K+ N + ++I W Sbjct: 77 -------LDNLPEPLAGSTGKLAHPVAQTGLRKL-NDAAVAEWIASRSDLW--------- 119 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE- 186 ++PK+DG +T+ Y G +A RGDG G+D +A R +P +P +PE ++ Sbjct: 120 --IQPKVDGVAVTLVYRHGVLQHAVSRGDGRHGQDWTARARQLPGVP----TRLPEPLDA 173 Query: 187 -VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGL 243 ++GE+Y N+ + D A R +G++ R L+ + + FV Sbjct: 174 VLQGELYWRLNEHVQSRDGG--------AGARGKVAGLMARQTLDQHEAD-AIGLFVWDW 224 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 E E LQ + LGF + QA S + + + P+ DG+V Sbjct: 225 PDGPEQMP----ERLQALHRLGFSDSLQYTQALRSPDQASLWRQ-RWFDQPQPFASDGVV 279 Query: 304 YKVDEFSLQKQLGER--ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + + GER A +P W I+ K+ QA + + IGRTG +TP+ L+PV Sbjct: 280 LRQGT----RPSGERWQAEAPHWAIAWKYPASQALAVVQAVHFSIGRTGRITPILHLQPV 335 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 ++ I+ L + + L DIR GD+V ++ AG IP++ +I R Sbjct: 336 DLDERRISRVALGSLQSWEKL-----------DIRPGDQVSIRLAGLTIPRLDQVIW--R 382 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P+ VV +P ++ R + C Q L RL + Sbjct: 383 SPE--------------RAVVHAPDPDQYHALSCWRLSA--ECRQQFLARLNWLAGKQGL 426 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 N+ GLG SE + L + + +++ + G G + L S Sbjct: 427 NLNGLGPGTWSTLLASE----------QLDGLLDWLEFDSQRLQQLPGIGPRRASQLQQS 476 Query: 542 INKRRNISLERFIFSLG 558 + + SL++++ +LG Sbjct: 477 FAQAQQRSLQQWLQALG 493 >gi|310765950|gb|ADP10900.1| NAD-dependent DNA ligase LigB [Erwinia sp. Ejp617] Length = 560 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 143/610 (23%), Positives = 245/610 (40%), Gaps = 103/610 (16%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +A E+S+LE ++ DD YY+ + I D YD L + F + + D Sbjct: 23 SASRADAEISALEAQLKKWDDAYYRRGESQIPDERYDTLHGKLQQWQRCF---SPASDLR 79 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 PL K G KV H + ++K+ + + R W +K D ++P Sbjct: 80 QPLLKTDG-------KVLHPVSHTGVKKL----SDKAAVAR----WMEKRDG---LWIQP 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ Y G+ V RGDG GED +A R IP IP+ + P + +GE+Y Sbjct: 122 KVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPAIPKSIP-RFPAVQVFQGELY 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + D D G K + R+ +G L P+ + + + FV A Sbjct: 181 LKMTDHQQATD-----GGK---SARSIVAGALMAKAPSTMLQRVGIFVWAWPDGPNSIA- 231 Query: 253 GQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + L +R LGFP ++N + + + + LP+ DG+V V Sbjct: 232 ---QRLTGIRALGFPDISNWTHRVENVDEVEGWRE--RWFHQALPFATDGIV--VHSIPT 284 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++ W I+ K+ + ++ + ++ IGRTG + V L PV + ++ Sbjct: 285 RQGTDWLPELGDWAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSRV 344 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNER----HPDA 425 + + ++ K D+ GD V + AG +P++ +I V ER PDA Sbjct: 345 NIGSIEHWKQT-----------DVIAGDLVSISLAGLGVPRMDKVIWRVKERVLPPLPDA 393 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 F+ ++ R T C Q L RL+ S+ N+ G Sbjct: 394 THFNS----------------------LSCFRLTA--QCRQQFLARLEWLSSKPVLNLSG 429 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 G+Q + A S+ A IF+ S +++ + G G+ + Sbjct: 430 AGRQTWQQLIQ----AGSM---AHIFSW---LALSEEQLKAVPGIGEQRAHFFWQQFRLS 479 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R + +R++ +LG+ A L+ N+ Q +++H+ DW L P VG Sbjct: 480 RQLPFKRWVKALGVP------IPERAMNTLTDDNWQQ----LLSHSLQDWQQL---PGVG 526 Query: 606 DIIAQAIVEF 615 +A+ I + Sbjct: 527 QTLARKIFSY 536 >gi|77461491|ref|YP_350998.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens Pf0-1] gi|123772014|sp|Q3K5E7|LIGB_PSEPF RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|77385494|gb|ABA77007.1| putative exported DNA-ligase protein [Pseudomonas fluorescens Pf0-1] Length = 558 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 154/629 (24%), Positives = 255/629 (40%), Gaps = 119/629 (18%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + +A E+ +L+Q+I DD Y++ + +I D YD + R + F P Sbjct: 28 AAARASSEVVALQQQIDRWDDAYHREGRSVIADELYDQSRLRLNQWRQCF----NLPSPP 83 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 PL G V H + L+K+ + D+ ++ +D +++ ++P Sbjct: 84 EPLRTASG-------PVAHPVAHTGLDKLHDAADIATWL---------RDRQNVW--VQP 125 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ Y G+ A RGDG G+D +A + I IP+ L P+ + V+GE+Y Sbjct: 126 KVDGVAVTLIYRDGRLHQAISRGDGVRGQDWTASAKKIGAIPQ--QLTQPQDLLVQGELY 183 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 LN M A R AN R +G+L R D+ G+G + Sbjct: 184 WR------LNGHMQA--RAGSANARATVAGLLGR---KDLGAE---HAAGIGLFVWDWPH 229 Query: 253 GQYEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 G ++ +++ L GFP QA V+ N+ + R S LP+ DG+V Sbjct: 230 GPRDLPERITALTQFGFPTTVPYTQA------VASLNDAQHWRDHWYHSPLPFATDGVVL 283 Query: 305 KVDEFSLQKQLGER--ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 + SL+ ER AR P W ++ K+ QA + + +IGRTG +TPV L PV Sbjct: 284 RQ---SLRPP-AERWQARPPYWAVAWKYPFAQALADVRKVHFKIGRTGRITPVLELSPVM 339 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + ++ IK + S DIR GD+V + AG IP++ +++ Sbjct: 340 L-----------DDRQIKRVSVSSLRRWQELDIRPGDQVAISLAGLTIPRLDSVVL---- 384 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC---TGGLACSAQQLERLKHFVSRD 479 +S DLN A C T G C +Q L RL + Sbjct: 385 ---------------RSTERADLNVPLASDFHALSCWQPTPG--CESQFLARLTWLSGKQ 427 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 + +G+ + ++ + D TL ++ NI G G+ S L Sbjct: 428 GLALPHVGRGTWEKLLETG----RLNSLLDWLTL------DGPELANIAGLGERSSARLL 477 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 S + R +++ +LG+ G A S+Q AQ N + W + Sbjct: 478 HSFHSARQRPFAQWLKALGLPPTGQ------ATLADSWQALAQR-------NTEQWQAEA 524 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 +G A + F+++P+ + E L Sbjct: 525 G---IGPGRAAQLSAFFRDPQVLTLSETL 550 >gi|313500944|gb|ADR62310.1| LigB [Pseudomonas putida BIRD-1] Length = 566 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 133/606 (21%), Positives = 255/606 (42%), Gaps = 101/606 (16%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +QA E++ L ++ D+ Y++ ++ D YD + R + + F A P+ P Sbjct: 29 QQAEAEVAQLRATLARWDEHYHRQGIALVADELYDQSRERLNHLQQCF---AVGTSPS-P 84 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 L G V H +P ++K+ + + + +++ W ++PK+ Sbjct: 85 LASARG-------PVPHPVPHTGVDKLADRQAVARWMAGKTGVW-----------VQPKV 126 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEVY 192 DG +++ Y++G+ V RGDG G D S ++ + + R +PE +++ +GE+Y Sbjct: 127 DGVAVSLTYQQGRLVQLTSRGDGVHGHDWSRHVKQLGAVTR----QLPEAVDLHLQGELY 182 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 L LND + A + AN R +G+L R T + + FV G E Sbjct: 183 ------LRLNDHVQA--KAGSANARGTVAGLLARKQLTGEQGNAIGLFVWGWPHGPEQ-- 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E L ++ LGFP + A +++ E RS LP+ DG++ + Sbjct: 233 --QAERLAQLARLGFPDSQLYSIAIDTLEDAAHWRE-HWYRSALPFATDGVILRQGSRPP 289 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++ +A++P W+ + K+ QA + D+ ++GRTG +TPV ++PV + IT Sbjct: 290 AERW--QAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQV 347 Query: 372 TLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 +L G + R R DIR GD+V + AG IP++ ++ R + QP + Sbjct: 348 SL------------GSLARWQRLDIRPGDQVAISLAGLTIPRLEHVV--HRAVERQPITA 393 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ P + R + G C Q + RL + + G Sbjct: 394 PA--------------PDQHHAHSCWRASEG--CDEQFIARLTWLGGKQGLALPRTGPGT 437 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + ++ Q +++ G ++ +L S ++ R+ + Sbjct: 438 WRRLVEA----------GLVTSMTDWLQLDAERLQQAPGISRLTAAHLMGSFDEARSRPV 487 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ++++ +LG+ I + L + + + N + W + VP +G + Sbjct: 488 DQWLRALGV-----PIGKHLP--------LTGDWQALASRNAEQWQT---VPGIGAKRSH 531 Query: 611 AIVEFY 616 +VEF+ Sbjct: 532 QLVEFF 537 >gi|259906726|ref|YP_002647082.1| NAD-dependent DNA ligase LigB [Erwinia pyrifoliae Ep1/96] gi|224962348|emb|CAX53803.1| NAD-dependent DNA ligase [Erwinia pyrifoliae Ep1/96] gi|283476511|emb|CAY72326.1| putative NAD-dependent DNA ligase [Erwinia pyrifoliae DSM 12163] Length = 560 Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 144/611 (23%), Positives = 244/611 (39%), Gaps = 105/611 (17%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +A E+S+LE ++ DD YY+ + I D YD L + F + + D Sbjct: 23 SASRADAEISALEAQLKKWDDAYYRRGESQIPDERYDTLHGKLQQWQRCF---SPASDLR 79 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 PL K G KV H + ++K+ + + R W +K D ++P Sbjct: 80 QPLLKTDG-------KVLHPVSHTGVKKL----SDKAAVAR----WMEKRDG---LWIQP 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ Y G+ V RGDG GED +A R IP IP+ + P + +GE+Y Sbjct: 122 KVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPAIPKSIP-RFPAVQVFQGELY 180 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + D D G K + R+ +G L P+ + + + FV A Sbjct: 181 LKMTDHQQATD-----GGK---SARSIVAGALMAKAPSTMLQRVGIFVWAWPDGPNSIA- 231 Query: 253 GQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + L +R LGFP ++N + + + + LP+ DG+V V Sbjct: 232 ---QRLTGIRALGFPDISNWTHRVENVDEVEGWRE--RWFHQALPFATDGIV--VHSIPT 284 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++ W I+ K+ + ++ + ++ IGRTG + V L PV + ++ Sbjct: 285 RQGTDWLPELGDWAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSRV 344 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNER----HPDA 425 + + ++ K D+ GD V + AG +P++ +I V ER PDA Sbjct: 345 NIGSIEHWKQT-----------DVIAGDLVSISLAGLGVPRMDKVIWRVKERVLPPLPDA 393 Query: 426 QPF-SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 F S F L P+ C Q L RL+ S+ N+ Sbjct: 394 THFNSLSCF----------RLTPQ---------------CRQQFLARLEWLSSKPVLNLS 428 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G G+Q + A S+ IF+ S +++ + G G+ + Sbjct: 429 GAGRQTWQQLIQ----AGSM---THIFSW---LALSEEQLKAVPGIGEQRAHFFWQQFRL 478 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R + +R++ +LG+ A L+ N+ Q +++H+ DW L P V Sbjct: 479 SRQLPFKRWVKALGVP------IPERAMNTLTDDNWQQ----LLSHSLQDWQQL---PGV 525 Query: 605 GDIIAQAIVEF 615 G +A+ I + Sbjct: 526 GQTLARKIFSY 536 >gi|254229733|ref|ZP_04923142.1| DNA ligase [Vibrio sp. Ex25] gi|151937778|gb|EDN56627.1| DNA ligase [Vibrio sp. Ex25] Length = 287 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 125/234 (53%), Gaps = 9/234 (3%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 E + L L++ + YH YY P I D+EYD L R I PDL + P+ Sbjct: 23 ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPS-- 80 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF-FTLEPK 133 ++GG+ + +VTH +P LSL+ ++ +L F R ++ S+ + EPK Sbjct: 81 -QRVGGQPLSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQ---ERVGSQSVKEYCCEPK 136 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++ +R I IP L N P +EVRGEV+ Sbjct: 137 LDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVF 196 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGLGK 245 + K F LN+ G K + N RNAA+G LR+L+ +R L+F+ + G+ Sbjct: 197 MPKAGFEKLNELARKKGEKIFVNXRNAAAGSLRQLDSRITASRPLSFYAYSGGR 250 >gi|104783946|ref|YP_610444.1| NAD-dependent DNA ligase LigB [Pseudomonas entomophila L48] gi|123255217|sp|Q1I3X5|LIGB_PSEE4 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|95112933|emb|CAK17661.1| putative DNA ligase, NAD-dependent [Pseudomonas entomophila L48] Length = 557 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 126/560 (22%), Positives = 233/560 (41%), Gaps = 93/560 (16%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++AR E+S L + +S+ DD Y++ ++ D YD ++ + F DLA Sbjct: 22 PCPDWPAQRARAEVSQLLKTLSHWDDHYHRQGVALVADELYDQSRQHLRHLQGCF-DLAS 80 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++ P + + +V H +P ++K+ + +++++ W Sbjct: 81 NDAP----------LATARGQVPHPVPHTGVDKLRDEPAVQRWLQGRQGMW--------- 121 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PK+DG +++ Y++G+ RGDG G D S R IP + R++ +P+ ++ Sbjct: 122 --IQPKVDGVAVSLVYQQGQLTQLLSRGDGVLGHDWS---RHIPQLGRIVR-QLPQPLDT 175 Query: 188 --RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD-----ITRYLNFFV 240 +GE+Y D + AN R +G+L R +D I ++ + Sbjct: 176 VFQGELYWRLADHVQ--------AEAGSANARGIVAGLLARKQLSDEQGSGIGLFVWDWP 227 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G G Q E L ++ LGF + A +++ + R+ LP+ D Sbjct: 228 AGPGS--------QAERLAQLTALGFIDSQRFSVAIEGFDAAAHWRQ-HWYRTALPFATD 278 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G++ + D ++ RA++P W+ + K+ QA ++ DI +IGRTG +TP+ +LEP Sbjct: 279 GVILRQDARPPAQRW--RAQAPYWIAAWKYPFSQALAQVRDIHFRIGRTGRITPLLQLEP 336 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN 419 + + I+ +L G + R + DIR GD+V V AG IP+V ++ Sbjct: 337 IQLDDRRISQVSL------------GSLARWTQLDIRPGDQVAVSLAGLTIPRVESVVHR 384 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 P P P +P L++ + + AC Q L RL Sbjct: 385 S------PLRAPVLVP----------DPADHHLLSCWQASP--ACQEQFLARLAWLGGNK 426 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 ++ G+G +S + TL + + + + G L Sbjct: 427 GLDMAGVGSGVWHQLVES----------GKVATLSDWLELTREDLLEVPGIAQARAERLL 476 Query: 540 DSINKRRNISLERFIFSLGI 559 + + R ER++ LG+ Sbjct: 477 QAFSLGRRQPFERWLRGLGL 496 >gi|227327138|ref|ZP_03831162.1| NAD-dependent DNA ligase LigB [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 563 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 137/614 (22%), Positives = 248/614 (40%), Gaps = 117/614 (19%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF----PDLARSEDPNGP 74 KE+ +L ++ DD YY K I D YD L+ + + F P R D NG Sbjct: 37 KEIDALRHQLEQWDDVYYTEGKSPIEDDVYDQLREQLNQWLGCFQPQNPIPVRLPD-NG- 94 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 K +H + L+K+ + L ++I + W ++PK+ Sbjct: 95 -------------KQSHPVAHTGLKKLSDRRQLMQWIAQREDLW-----------IQPKV 130 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +T+ Y+ GK V A RG+G GED + +R IP IP +L+ + P + ++GE+++ Sbjct: 131 DGVAVTLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLT-DAPSSLVLQGELFLK 189 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 N + G N R+ +G +RR P+ + + FV + Sbjct: 190 MT-----NHQQRTQGG---VNARSVVAGEMRRHQPSPVLSQIALFVWEWPDGPKTMP--- 238 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK----SIRSTLPYDIDGLVYKVDEFS 310 E L+K++ +GF + A+ H I S+ + K LP+ DG+V + + Sbjct: 239 -ERLEKLKEMGFAMT-----ADYTHAIGSFADAEKWRHDWYHGPLPFVTDGVVIRQTKEP 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 + R S W I+ K+ + D+ +GRTG + V +L P+ + ++ Sbjct: 293 QGRYW--RNTSADWAIAWKYPPVNQVAEVADVAFSVGRTGKIAVVLKLNPLKLDDKSVSR 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDI---------IVNE 420 + G + R + D+ GDRV V AG+ IP++ ++ IV Sbjct: 351 VNV------------GSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVWRGTERPAIVFP 398 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 D FS + +CQ + + L +G H L ++H + D Sbjct: 399 SEHDFHAFSCFRYSAVCQQQFLARLVWLSGD----HGLKLAGVREGMWLRLIQHDLLEDV 454 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 + L + QL+ + G GD ++YD Sbjct: 455 LSWLSLTEAQLN---------------------------------AVNGMGDKRARDIYD 481 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA----QEINNIIAHNNDDWL 596 S+ R + L R++F+LGI + I+ +L+ Q + ++ + I ++ + Sbjct: 482 SLQSARQMPLSRWLFALGIPVPRSAISALDDVDWLALQQWTAQQWRQFSGIGERRAEEIM 541 Query: 597 SLIRVPLVGDIIAQ 610 + ++ P+V ++I + Sbjct: 542 AFLKHPIVVELITR 555 >gi|312170612|emb|CBX78875.1| putative NAD-dependent DNA ligase [Erwinia amylovora ATCC BAA-2158] Length = 554 Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 144/616 (23%), Positives = 245/616 (39%), Gaps = 107/616 (17%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +A E+++L+ ++ D+ YY+ + + D YD L + F + + D Sbjct: 22 WSPSRADAEIAALKAQLEKWDEAYYRRGEAQVPDERYDTLHDKLQQWQRCF---SPASDL 78 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 PL K G KV H + ++K + + R W +K D ++ Sbjct: 79 RQPLLKTDG-------KVLHPVSHTGVKK----ASGKAAVAR----WMEKRDG---LWIQ 120 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG +T+ Y G+ V RGDG GED +A R IP IP+ + P + +GE+ Sbjct: 121 PKVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPDIPKSIP-RFPAMQVFQGEL 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 Y+ D ND G K + R+ +G L + + + + FV A Sbjct: 180 YLKMTDHQQAND-----GGK---SARSLVAGALMAKAASTVLQRVGIFVWAWPDGPNSIA 231 Query: 252 KGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL-VYKVDEF 309 K L +R LGFP + + + + + + LP+ DG+ V+ + Sbjct: 232 K----RLTGIRALGFPDIKDWTHRVENVDEVEGWRE--RWFHQRLPFATDGIVVHGMPTR 285 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 L ER W I+ K+ + ++ + ++ IGRTG + V L PV + ++ Sbjct: 286 QGTDWLPERG---DWAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVS 342 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNER----HP 423 + + ++ K D+ GD+V + AG +P++ +I V ER P Sbjct: 343 RVNIGSIEHWKQT-----------DVIAGDQVSISLAGMGVPRMDKVIWRVKERVLPPLP 391 Query: 424 DAQPF-SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 DA F S F L PK C Q L RL+ S+ N Sbjct: 392 DATHFNSLSCF----------HLTPK---------------CRQQFLARLEWLSSKPVLN 426 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 + G G+Q +S A IF+ S +++ + G G+ + Sbjct: 427 LSGAGRQTWQQLMQSGSMAH-------IFSW---LALSEEELKAVPGIGEQRAHFFWHQF 476 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 R + +R++ +LG+ A L+ N+ Q +++H+ DW L P Sbjct: 477 RLSRQLPFKRWVKALGVP------IPERAMNTLTDDNWQQ----LLSHSLQDWQQL---P 523 Query: 603 LVGDIIAQAIVEFYQN 618 VG +A+ I + Q Sbjct: 524 GVGQTLARKIFSYLQQ 539 >gi|227113300|ref|ZP_03826956.1| NAD-dependent DNA ligase LigB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 563 Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 140/619 (22%), Positives = 251/619 (40%), Gaps = 126/619 (20%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 KE+ +L ++ DD YY K I D YD L+ + + F P N I Sbjct: 37 KEIDALRHQLELWDDVYYTEGKSPIEDDVYDQLRDQLNQWLGCF----------QPKNAI 86 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 + + K H + L+K+ D R+ + I ++D ++PK+DG Sbjct: 87 PARLPDN-GKQLHPVAHTGLKKL---SDRRQLVQWI----APRED----LWIQPKVDGVA 134 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +T+ Y+ GK V A RG+G GED + +R IP IP +L+ + P + ++GE+ F Sbjct: 135 VTLVYQHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLT-DAPSSLVLQGEL------F 187 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 L + D + + N R+ +G +RR P+ + + FV + E L Sbjct: 188 LKMTDHRQRI--QGSVNARSVVAGEMRRHQPSPVLSQIGLFVWEWPDGPKTMP----ERL 241 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMK----SIRSTLPYDIDGLVYKVDEFSLQKQ 314 +K++ +GF + A+ H I S+ + K S LP+ DG+V + ++ Sbjct: 242 EKLKEMGFAMT-----ADYTHAIGSFADAEKWRHHWYHSPLPFVTDGVVIR----QTKEP 292 Query: 315 LGERARS--PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 G R+ W I+ K+ ++D+ +GRTG + V +L P+ + Sbjct: 293 QGRYWRNTLADWAIAWKYPPVHQVAEVVDVAFSVGRTGKVAVVLKLNPLKL--------- 343 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV--NERHPDAQP--F 428 ++ ++ ++ D+ GDRV V AG+ IP++ +++ ER P Sbjct: 344 --DDKSVRRVNVGSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVWRSTERPAIVSPNEH 401 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 F +F S +AC Q L RL N+ G+ + Sbjct: 402 DFHAFSCFRYS----------------------VACQQQFLARLVWLSGEHGLNLAGVRE 439 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + + + D+ + + ++ + G GD ++Y S+ RN+ Sbjct: 440 GMWQRLIQHD-------VLEDVLSW---LSLTEAQLNAVNGMGDKRARDIYTSLQSARNM 489 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI--------R 600 L R++ +LGI + RS + A +N WL+L + Sbjct: 490 PLSRWLLALGI-----PVPRSASS----------------ALDNVGWLALQQWTAQQWRQ 528 Query: 601 VPLVGDIIAQAIVEFYQNP 619 P +G+ A+ I+ F ++P Sbjct: 529 FPGIGEGRAEEIMAFLKHP 547 >gi|330812312|ref|YP_004356774.1| DNA ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380420|gb|AEA71770.1| putative exported DNA-ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 557 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 133/562 (23%), Positives = 228/562 (40%), Gaps = 89/562 (15%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P E+AR E+++L+Q+I DD Y++ + + D YD + + F +LA Sbjct: 22 PCPDWPTERARAEIAALQQQIDTWDDGYHRLGQSPVADELYDQSRAQLGQWRRCF-NLAA 80 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 +DP GG KV H + LEK+ + + + ++ W Sbjct: 81 PDDPP---RSTGG-------KVPHPVVHTGLEKLKDADAVGAWLRGREDVWA-------- 122 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 +PK+DG +T+ Y KG+ A RGDG G D + R I IP+ L ++ +++ Sbjct: 123 ---QPKVDGVAVTLVYRKGRLHQAISRGDGVQGHDWTTNARKIGAIPQRLHQSVDLVVQ- 178 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 GE+Y + + + N R +G++ R N T Y++ FV + Sbjct: 179 -GELYWRLEAHVQASSGSV--------NARGTMAGLMARSNLTVHDGVYIDLFVWDWPEG 229 Query: 247 SEIFAKGQYEMLQKMRCLGFP----VNNGVRQ-ANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + E + + LGF N VR A+ +Y R+ LP+ DG Sbjct: 230 PDTLP----ERMAALNALGFADTLDYNQPVRTLADAEQWRDHWY------RTPLPFASDG 279 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V + +AR+P W ++ K+ QA + + ++GRTG +TPV LE + Sbjct: 280 IVLHQSRRPPADRW--QARAPFWSVAWKYPYAQALAEVRKVHFKVGRTGRITPVLELERI 337 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + ++ +I+ + S DIR GDRV + AG IP++ +++ R Sbjct: 338 RL-----------DDRWIRRVSVSSLKRWEEMDIRPGDRVAISLAGLTIPRLDSVVL--R 384 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 + Q + P+ + P G C +Q L RL + Sbjct: 385 SVERQNLNVPA---ETDHHFLSCWQPTPG-------------CESQFLARLGWLSGKQGL 428 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 + +G + A + D TL ++ NI GFG+ S T L S Sbjct: 429 ALPHVGPGTWEKLLA----AGRLDGLLDWMTL------DAAELANIAGFGEHSSTRLLAS 478 Query: 542 INKRRNISLERFIFSLGIRHVG 563 ++ R E+++ +LG+ G Sbjct: 479 LHSARQRPFEQWLKALGLPPAG 500 >gi|292486544|ref|YP_003529410.1| putative NAD-dependent DNA ligase [Erwinia amylovora CFBP1430] gi|292897779|ref|YP_003537148.1| DNA ligase [Erwinia amylovora ATCC 49946] gi|291197627|emb|CBJ44721.1| putative DNA ligase [Erwinia amylovora ATCC 49946] gi|291551957|emb|CBA18994.1| putative NAD-dependent DNA ligase [Erwinia amylovora CFBP1430] Length = 554 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 142/615 (23%), Positives = 243/615 (39%), Gaps = 105/615 (17%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +A E+++L+ ++ D+ YY+ + + D YD L + F + + D Sbjct: 22 WSPSRADAEIAALKAQLEKWDEAYYRRGEAQVPDERYDTLHDKLQQWQRCF---SPASDL 78 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 PL K G KV H + ++K + + R W +K D ++ Sbjct: 79 RQPLLKTDG-------KVLHPVSHTGVKK----ASGKAAVAR----WMEKRDG---LWIQ 120 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG +T+ Y G+ V RGDG GED +A R IP IP+ + P + +GE+ Sbjct: 121 PKVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPDIPKSIP-RFPAMQVFQGEL 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 Y+ D ND G K + R+ +G L + + + + FV A Sbjct: 180 YLKMTDHQQAND-----GGK---SARSLVAGALMAKAASTVLQRVGIFVWAWPDGPNSIA 231 Query: 252 KGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K L +R LGFP + + + + + + LP+ DG+V V Sbjct: 232 K----RLTGIRALGFPDIKDWTHRVENVDEVEGWRE--RWFHQRLPFATDGIV--VHGMP 283 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ W I+ K+ + ++ + ++ IGRTG + V L PV + ++ Sbjct: 284 TRQGTDWLPEQGDWAIAWKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSR 343 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNER----HPD 424 + + ++ K D+ GD+V + AG +P++ +I V ER PD Sbjct: 344 VNIGSIEHWKQT-----------DVIAGDQVSISLAGMGVPRMDKVIWRVKERVLPPLPD 392 Query: 425 AQPF-SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 A F S F L PK C Q L RL+ S+ N+ Sbjct: 393 ATHFNSLSCF----------HLTPK---------------CRQQFLARLEWLSSKPVLNL 427 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 G G+Q +S A IF+ S +++ + G G+ + Sbjct: 428 SGAGRQTWQQLMQSGSMAH-------IFSW---LALSEEELKAVPGIGEQRAHFFWQQFR 477 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R + +R++ +LG+ A L+ N+ Q +++H+ DW L P Sbjct: 478 LSRQLPFKRWVKALGVP------IPERAMNTLTDDNWQQ----LLSHSLQDWQQL---PG 524 Query: 604 VGDIIAQAIVEFYQN 618 VG +A+ I + Q Sbjct: 525 VGQTLARKIFSYLQQ 539 >gi|312963566|ref|ZP_07778047.1| DNA ligase B [Pseudomonas fluorescens WH6] gi|311282075|gb|EFQ60675.1| DNA ligase B [Pseudomonas fluorescens WH6] Length = 553 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 140/632 (22%), Positives = 261/632 (41%), Gaps = 108/632 (17%) Query: 7 IPIEALS---IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 +P+ +L+ E AR ++ L +++ DD Y++ + + D YD ++R +A P Sbjct: 12 VPLWSLAQNCPEDARTQIHELAEQVRLWDDSYHRLGQSPVSDELYDQARQR---LADWRP 68 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 A+ P G + S + H + LEK+ + + + ++ W Sbjct: 69 CAAQ------PATVPGNPLTTSRGTLPHPVAHTGLEKLRDEQAVGTWLDTHKEVW----- 117 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 ++PK+DG +T+ Y +G+ RGDG G+D SA R IP I V L P Sbjct: 118 ------IQPKVDGVAVTLMYRQGRLSRVISRGDGTLGQDWSASARKIPGI--VQQLPEPL 169 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL--RRLNPTDITRYLNFFVH 241 + ++GE+Y + + + N R+ +G++ R+L+ TD + FV Sbjct: 170 DLVLQGELYWRLHAHVQSASGGL--------NARSKVAGLMNRRQLSDTDAAG-IGLFVW 220 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ-----ANTFHGIVSYYNEMKSIRSTLP 296 + F E L + LGF + Q + H +YN LP Sbjct: 221 AWPEGPTGFT----ERLATLARLGFVDSQRYSQPVQDLTDAMHWRAYWYNH------PLP 270 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 + DG+V + + ++ +A +P W ++ K+ +A + + ++GRTG +TP+ Sbjct: 271 FASDGVVLHQAQHAPAQRW--QANAPYWAVAWKYPATKALALVRKVHFKVGRTGRITPIL 328 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 L+PV++ I+ + + + L DIR GD+V + AG+VIP++ ++ Sbjct: 329 ELQPVHLDDRQISRVSAGSLKRWQAL-----------DIRPGDQVSISLAGQVIPRLDEV 377 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 I+ +A P P +P+ ++ + G C Q L RL Sbjct: 378 ILR----NATRVDLP--VP----------DPRNFHALSCWQLDPG--CEEQLLARLSWLS 419 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 + +G++ + ++ A + D TL ++ NI G GD+S Sbjct: 420 GNQGLALPHMGRETWNVLIQAGLIAGFL----DWLTL------DAAELANIDGLGDLSRA 469 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 + DSI R +++ +LG+ AR+ N + +IA + W Sbjct: 470 RVLDSIRSARQRPFAQWLKALGV----PPAARN---------NLEGDWQTLIARDTQAWQ 516 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 + + +G A + F+++P+ E L Sbjct: 517 A---IDGIGPGRAAQLSAFFRDPQIQALAETL 545 >gi|330722383|gb|EGH00233.1| DNA ligase [gamma proteobacterium IMCC2047] Length = 258 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 114/204 (55%), Gaps = 9/204 (4%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 R+E+ +L +++ H+ YY +P I D EYD L R+ I P+L + P + Sbjct: 7 RQEVEALRAQLNQHNYRYYVLDEPSIPDVEYDRLLRQLQTIEAQHPELISQDSPT---QR 63 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + + +VTH + LSL+ +N +++R F RI + KD + + F EPK+DG Sbjct: 64 VGAQPLTAFGEVTHDMRMLSLDNAFNDDEMRDFERRIKD--RLKDTSELEFVCEPKLDGI 121 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 +++ YE G FV A RGDG +GE+++ +R +P+IP ++ PE +EVRGEVY+ K Sbjct: 122 AVSLLYENGIFVRGATRGDGQTGENITQNLRTVPSIPLTLMGTGWPERLEVRGEVYMPKA 181 Query: 197 DFLALNDEMIAVGRKPY---ANPR 217 F A N + + + P A PR Sbjct: 182 GFDAFNKQGLLTVKSPLLIRAMPR 205 >gi|330961969|gb|EGH62229.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 523 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 125/547 (22%), Positives = 229/547 (41%), Gaps = 86/547 (15%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 ++L+Q+I+ DD Y++ +I D YD +++ A F A S PL G Sbjct: 1 TALQQQIASWDDSYHRQGISLIPDELYDQARQKLSAWRTCF---AVSTPEANPLATATGP 57 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 + H IP + K+ + +D++ ++ W ++PK+DG +T+ Sbjct: 58 L-------AHPIPHTGVNKLADEKDVKAWLKGRTDLW-----------IQPKVDGVAVTL 99 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 Y++G+ V A RGDG G+D + R I IPR L E + ++GE+Y ++ + Sbjct: 100 IYDEGRLVQAISRGDGVQGQDWTPQARLIKAIPRQLPRT--ESVILQGELYWRLDEHIQA 157 Query: 202 NDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 + N R+ +G+L R + P + FV + G +M Q Sbjct: 158 TSGSV--------NARSKVAGLLARQTIKPQQ-ANAIGLFVWD-------WPNGPTDMAQ 201 Query: 260 K---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + ++ +GF + G H + + E R+ LP+ DG++ + + ++ Sbjct: 202 RLAGLQAMGFGDSVGYTHLLENHAQAAKWRE-HWYRNPLPFATDGVIMRQGQRPPAQRW- 259 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +A +P W+ + K QA + +++ +GR+G +TPV L PV + ++T + + Sbjct: 260 -QATAPYWIAAWKHPYAQALAEVRNVNFTVGRSGRITPVLELTPVRLDDRIVTRISAGSL 318 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 + L DIR GD+V V AG IP++ ++ R + S P Sbjct: 319 QRWQAL-----------DIRPGDQVAVSLAGLTIPRLDSVV--SRATERAEMSTPD---- 361 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 RD + ++ + T G C +Q RL + + G+G D + Sbjct: 362 -----ARDFHE-----LSCWQATPG--CESQFRARLVWLSGKKGLALPGVGPGTWDRLIE 409 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 + A + D TL ++ NI GF + S L S+ R + ++ + Sbjct: 410 NGRIAGLL----DWMTLNH------AELANIPGFAERSSAKLLASLQTARERPFQVWLKA 459 Query: 557 LGIRHVG 563 +G+ G Sbjct: 460 IGLPPTG 466 >gi|188532209|ref|YP_001906006.1| NAD-dependent DNA ligase LigB [Erwinia tasmaniensis Et1/99] gi|188027251|emb|CAO95090.1| Putative NAD-dependent DNA ligase [Erwinia tasmaniensis Et1/99] Length = 561 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 145/616 (23%), Positives = 248/616 (40%), Gaps = 109/616 (17%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +A E+S+L+ ++ DD YY+ + I D +YD L + F + + D Sbjct: 23 SASRADAEISALQAQLEKWDDAYYRRGESPIPDEQYDTLHGKLRQWQRCF---SPASDLR 79 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 PL K G KV H + + ++K+ + L +++ R W ++P Sbjct: 80 KPLLKTDG-------KVLHPVSHMRVKKLPDKTALTRWMARRSGLW-----------VQP 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV---RG 189 KIDG +++ Y G+ RGDG GED + R IP IP+ IP + V +G Sbjct: 122 KIDGVAVSLLYRDGQLEQMISRGDGVRGEDWTEKARLIPDIPKF----IPHSMRVQVFQG 177 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+Y+ D + + I G+ N R+A +G L P + + + FFV Sbjct: 178 ELYLKMTD----HRQAINGGK----NARSAVAGALMAKAPAPLLQQIGFFVWEWPDGPTS 229 Query: 250 FAKGQYEMLQKMRCLGFP-VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 A + L + R LGFP ++ + + + S+ + LP+ DG+V V Sbjct: 230 LA----QRLTETRSLGFPDISAWTHRVDNVDEVESWRE--RWFHQPLPFVTDGIV--VHS 281 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++ W+I+ K+A +A+ + ++ IGRTG + V L PV +G I Sbjct: 282 IPTRRGSDWLPEFGEWVIAWKYAPPEATAEVRSVEFAIGRTGRVNVVLNLLPVQLGDKRI 341 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNER----H 422 + ++ + + K D+ GD+V + AG P++ ++ V ER Sbjct: 342 SRVSVGSIENWKQT-----------DVIAGDQVSISLAGLGAPRLDKVLWRVAERAYPPQ 390 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 PDA F+ S L P+ C Q L RL+ + N Sbjct: 391 PDAAQFN---------SVSCFHLTPQ---------------CRQQFLARLEWLGGKSVLN 426 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 + G G+Q +S IF+ + ++E + G G+ + Sbjct: 427 LVGTGRQTWQQLIQSGS-------MVHIFSW---LALTKEQLEAVPGIGEQRAQLFWQQF 476 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 R + +R++ +LG+ I A L+ N+ +++ +W L P Sbjct: 477 KLSRQLPFKRWVKALGV-----PIPEK-ALNTLTDDNW----QPLVSRRLQEWQQL---P 523 Query: 603 LVGDIIAQAIVEFYQN 618 VG +A IV F Q Sbjct: 524 GVGRKLAGKIVSFLQQ 539 >gi|26991646|ref|NP_747071.1| NAD-dependent DNA ligase LigB [Pseudomonas putida KT2440] gi|81439525|sp|Q88D59|LIGB_PSEPK RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|24986741|gb|AAN70535.1|AE016695_9 DNA ligase, NAD-dependent, putative [Pseudomonas putida KT2440] Length = 566 Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 139/624 (22%), Positives = 261/624 (41%), Gaps = 104/624 (16%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +QA+ E++ L ++ D+ Y++ ++ D YD R + + F A P+ P Sbjct: 29 QQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSHERLNHLQQCF---AVGTSPS-P 84 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 L G V H +P ++K+ + + + +++T W ++PK+ Sbjct: 85 LASARG-------PVPHPVPHTGVDKLADRQAVARWMTGKTGVW-----------VQPKV 126 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEVY 192 DG +++ Y++G+ V RGDG G D S R IP + V + +PE +++ +GE+Y Sbjct: 127 DGVAVSLTYQQGRLVQLTSRGDGVHGHDWS---RHIPQLGAV-TRQLPEAVDLHLQGELY 182 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFA 251 L L++ + A + AN R +G+L R T + FV G E Sbjct: 183 ------LRLDEHVQA--KAGSANARGTVAGLLARKQLTGAQGNAIGLFVWGWPHGPEQ-- 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q E L ++ LGFP + A +++ E RS LP+ DG++ + Sbjct: 233 --QAERLAQLARLGFPDSQLYSIAIDTLEDAAHWRE-HWYRSALPFATDGVILRQGSRPP 289 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++ +A++P W+ + K+ QA + D+ ++GRTG +TPV ++PV + IT Sbjct: 290 AERW--QAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQV 347 Query: 372 TLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 +L G + R R DIR GD+V + AG IP++ ++ R + QP + Sbjct: 348 SL------------GSLARWQRLDIRPGDQVAISLAGLTIPRLEHVV--HRAVERQPITA 393 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ P AH C C Q + RL + + G Sbjct: 394 PA--------------PDQHH---AHSCWQASEGCDEQFIARLTWLGGKQGLALPRTGPG 436 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ + ++ Q +++ G ++ T + S ++ R+ Sbjct: 437 TWRRLVEA----------GLVTSMTDWLQLDAERLQQAPGISRLTATQMLGSFDQARSRP 486 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 ++++ +LG+ + K+ N+ + + + W + VP +G + Sbjct: 487 FDQWLRALGV---------PIGKHLPLTGNW----QALASRSAGQWQT---VPGIGAKRS 530 Query: 610 QAIVEFYQNPRNICAVEALLKEVS 633 + +VEF+ + A+ A L E Sbjct: 531 RQLVEFFAA-SEVQAIAAQLAEAG 553 >gi|253690568|ref|YP_003019758.1| DNA ligase (NAD(+)) [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259494926|sp|C6DJC3|LIGB_PECCP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|251757146|gb|ACT15222.1| DNA ligase (NAD(+)) [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 562 Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 137/617 (22%), Positives = 257/617 (41%), Gaps = 109/617 (17%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++KE+ +L Q++ DD YY K + D YD L+ + + F P Sbjct: 33 RSKKEIDALRQQLEQWDDVYYTEGKSPVADDVYDQLREQLNQWLGCF-------QPQSVA 85 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 + + L V H+ L+K+ + E L ++I Q++D ++PKID Sbjct: 86 SVRLPDHGKQLHPVAHT----GLKKLSDREQLVQWIA------QRED-----VWIQPKID 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ Y+ GK A RG+G GED + +R IP IP +L+ N+P ++ ++GE+++ Sbjct: 131 GVAVTLVYQHGKLESAVSRGNGLQGEDWTEKVRLIPEIPHLLT-NVPSLLVLQGELFLKM 189 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 D + + I G N R+ +G +RR P+ + + F+ + Sbjct: 190 TD----HRQHIQGG----VNARSVVAGEMRRHQPSPVLSQIGLFIWEWPDGPKTMP---- 237 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK----SIRSTLPYDIDGLVYKVDEFSL 311 E L+K+ +GF + A+ H I S+ + K + LP+ DG+V + + Sbjct: 238 ERLEKLTEMGFAMT-----ADYTHAIGSFADAEKWHHYWYHNPLPFVTDGVVLRQTKEPQ 292 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 + R S W I+ K+ ++D+ +GRTG L V +L + + ++ Sbjct: 293 GRYW--RNTSADWAIAWKYPPFHQVAEVIDVVFSVGRTGKLAVVLKLNLLKLDDKSVSRV 350 Query: 372 TLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIV--NERHPDAQP- 427 + G + R + D+ GDRV V AG+ IP++ +++ ER P P Sbjct: 351 NV------------GSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVWRSTERLPIVSPS 398 Query: 428 ------FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 FS + +CQ + + L +G+ H L ++H + D Sbjct: 399 EHDFHAFSCFRYSTVCQQQFLARLVWLSGE----HGLNLTGVRDGMWLRLMQHGLLEDVL 454 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 + L + QL+ + G GD ++Y S Sbjct: 455 SWLSLTEAQLN---------------------------------AVTGMGDKRARDIYKS 481 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA----QEINNIIAHNNDDWLS 597 + R + L R++ +LG+ + I+ +L+ Q + ++ + I ++ ++ Sbjct: 482 LQSARQMPLSRWLLALGLPVPRSAISALNHVNWLALQQWTAQQWRQFSGIGERRAEEIMA 541 Query: 598 LIRVPLVGDIIAQAIVE 614 ++ P V + IA+ E Sbjct: 542 FLKHPAVVEFIARLDAE 558 >gi|92113642|ref|YP_573570.1| NAD-dependent DNA ligase LigB [Chromohalobacter salexigens DSM 3043] gi|123387489|sp|Q1QXD7|LIGB_CHRSD RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|91796732|gb|ABE58871.1| DNA ligase (NAD+) [Chromohalobacter salexigens DSM 3043] Length = 629 Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 139/611 (22%), Positives = 248/611 (40%), Gaps = 107/611 (17%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P ++ E + + +L+ I+ D YY+ + ++ D YD+ KRR A FP LA+ Sbjct: 45 PCPQMTPEAMQNDYQALDARIARWDRAYYRQGQRLVDDGTYDSAKRRLAHWAECFPLLAK 104 Query: 68 ----SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 + +P G + H + + K+ + + + ++ R + D Sbjct: 105 PSVNTHEPTGAKH--------------HPVAQTGIAKLPDRDAVAGWVAR-------QGD 143 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE 183 + ++ ++PK+DG +T+ Y G+ A RGDG SG+D I IP L + P Sbjct: 144 HPLW--VQPKVDGVAVTLVYRHGRLAAAISRGDGVSGQDWYTKALHIAAIPSHLPADAPP 201 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHG 242 ++ ++GE+Y + D R +G++ R TD + FV Sbjct: 202 LVILQGELYARRTAHRQSRDGTDGA--------RARIAGLMARDTLTDREGSTIGLFVWA 253 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYN----EMKSIRSTLPYD 298 + E L+ + GF A HG+ + + + R LP+ Sbjct: 254 WPNGPDTMP----ERLETLAGWGF-----GDVAEMTHGVATAEDIAAWRQRWYRHALPFA 304 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 DG+V K + +A P W ++ K+ ++A R+ ++ +GRTG + VA L Sbjct: 305 TDGVVVKRGDRPPGSDW--QASPPDWAMAWKYPAREALARVDALEFSVGRTGRIAVVAEL 362 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +G +T +L + + + D+R GD+V ++ AG IP++ +++V Sbjct: 363 EPVLLGDKRVTRVSLGSLAHWRRT-----------DVRPGDQVRLRLAGLTIPQLQEVVV 411 Query: 419 NER------HPDAQPF---SFPSFCPICQSRVVRDLN----------PKTGKLVAAHRCT 459 R P+A + S F P C+ + + L P G Sbjct: 412 RTRPRPQVDAPEADQYDRLSCLRFTPACRDQFLARLEWLGSDEGLDFPGIGPATWNQLVD 471 Query: 460 GGLACSAQQLERLKHFVSRDAFNIE---GLGKQQLDFF---FKSEDPAFSIR------IP 507 GL ++ L + + D +E G+GK+ + F D ++R +P Sbjct: 472 AGL------VKGLLDWRTLDTAALEALPGVGKKTARAWQRHFALADTRSAVRWLRALGVP 525 Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNL--YDSINKRRNISLERFIFSLGIRHVGA- 564 A + R+ T + + G G ++ + Y I + R + L RF IRH A Sbjct: 526 A----VPRQALTDALERYGMAGLGTLAPPDWRDYSGIGETRAMQLTRFFRDTDIRHWLAS 581 Query: 565 -EIARSLAKYY 574 E R+L K + Sbjct: 582 LESTRALQKQH 592 >gi|50119005|ref|YP_048172.1| NAD-dependent DNA ligase LigB [Pectobacterium atrosepticum SCRI1043] gi|81827264|sp|Q6DB58|LIGB_ERWCT RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|49609531|emb|CAG72964.1| putative DNA ligase [Pectobacterium atrosepticum SCRI1043] Length = 563 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 129/555 (23%), Positives = 224/555 (40%), Gaps = 99/555 (17%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A KE+ +L Q++ DD YY K I D YD L+ + + + F P Sbjct: 34 RASKEIDALRQQLEQWDDVYYTEGKSPIEDDVYDQLREQLNQWSQCF----------QPQ 83 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 N I + + K H + L+K+ + L ++I + W ++PK+D Sbjct: 84 NVIPARLPDN-GKQPHPVAHTGLKKLSDRVQLVQWIVQREDLW-----------VQPKVD 131 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ Y+ GK V A RG+G GED + R IP IP +LS P ++GE+++ Sbjct: 132 GVAVTLVYQHGKLVSAVSRGNGLQGEDWTEKARLIPDIPHLLS-GAPSSFVLQGELFLKM 190 Query: 196 NDFLALNDEMIAVGRKPYA----NPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 D + YA N R+ +G +RR P+ + + FV Sbjct: 191 TD------------HRQYAQGGVNARSIVAGEMRRHQPSPVLSQIGLFVWEWPDGP---- 234 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK----SIRSTLPYDIDGLVYKVD 307 K E L K++ +GF + A+ H I S+ + K S LP+ DG+V + Sbjct: 235 KAMPERLDKLKEMGFAMT-----ADYTHAIESFADVEKWRDHWYHSPLPFVTDGVVIRQT 289 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + + R S W I+ K+ ++D+ +GRTG + V ++ P+ + Sbjct: 290 KEPQGRYW--RNTSADWAIAWKYPPVHQVAEVVDVAFSVGRTGKVAVVLKISPLKLDDKS 347 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIV--NERHPD 424 ++ + G + R + D+ GDRV V AG+ IP++ +++ ER Sbjct: 348 VSRVNV------------GSLSRWKQWDVLPGDRVSVSLAGQGIPRLDNVVWRGTER--- 392 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P+ ++P A + C Q L RL N+ Sbjct: 393 ----------PVI-------VSPDEHNFHAFSCFRYSVVCQQQFLARLVWLSGEHGLNLA 435 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+ + + D + D+ + + ++ + G GD ++Y S+ Sbjct: 436 GM-RDGMWLRLMQHD------LLGDVLSW---LYLTEAQLNAVNGMGDKRARDIYMSLQS 485 Query: 545 RRNISLERFIFSLGI 559 R SL ++ +LGI Sbjct: 486 ARQKSLSHWLLALGI 500 >gi|257439787|ref|ZP_05615542.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165] gi|257197807|gb|EEU96091.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165] Length = 209 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 13/220 (5%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +EQARK L I ++ YY P + D EYDAL R A+ FP L + Sbjct: 1 MELEQARKRAEELRVIIERNNRLYYDQDAPELEDFEYDALTRELKALEAEFPQLVTA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P K+GG + KVTH++ SL ++ ++LR F R+ + + + +E Sbjct: 58 NSPTQKVGGTPSGRFAKVTHAVKMESLLDAFSFDELRDFDRRVREAGIEPE-----YVVE 112 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG ++ YE G V A+ RGDG GEDV+A ++AI IP+ L N PE +EVRGEV Sbjct: 113 IKIDGLSCSLEYENGVLVRASTRGDGVVGEDVTANVKAIKRIPKTLK-NAPEYLEVRGEV 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD 231 Y+ + F L E G A P ++ RR++ ++ Sbjct: 172 YMPHDAFQHLCAEQELQG----AAPLQKSAQCCRRVSASE 207 >gi|302186902|ref|ZP_07263575.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae 642] Length = 561 Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 123/559 (22%), Positives = 235/559 (42%), Gaps = 98/559 (17%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR E+++L+Q+I+ DD Y++ I D YD +++ F A S + PL Sbjct: 32 KARSEVTTLQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSCF---AVSTPESNPL 88 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 G ++ H +P + K+ + ++ ++ K N ++ ++PK+D Sbjct: 89 KTAVGPLH-------HPVPHTGVNKLADEGSVKDWL---------KGRNDLW--IQPKVD 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ YEKG+ V RGDG +G+D ++ R I IP+ L I++ GE+Y Sbjct: 131 GVAVTLVYEKGQLVQVISRGDGRNGQDWTSQARLIKAIPQQLPQAESPILQ--GELYWRL 188 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKG 253 +D + + N R+ +G+L R ++P + FV + G Sbjct: 189 DDHIQAASGSV--------NARSKVAGLLARQTISPQQ-ADAIGLFVWD-------WPNG 232 Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +M Q+ ++ +GF + + + + + E R+ LP+ DG++ + + Sbjct: 233 PADMTQRLAGLQTMGFEDSAAYTHSLENYAQAARWRE-HWYRNPLPFATDGVIMRQGQRP 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ +A +P W+ + K QA + ++ +IGR+G +TPV L PV + Sbjct: 292 PAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRL------- 342 Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 +D ++G + R DIR GD++ V AG IP++ ++ Sbjct: 343 -----DDRTVSRISTGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVV------------ 385 Query: 430 FPSFCPICQSRVVRDLN---PKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 SR + P+ ++ + T G C +Q RL F + + Sbjct: 386 ---------SRAAERADMIIPRAADFHELSCWQATPG--CESQFRARLAWFSGKKGLALP 434 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + ++ I L + ++ NI GF + S L DS++ Sbjct: 435 GIGPGTWNTLIEN----------GQIMGLLDWMTLNHAELVNIPGFAERSSAKLLDSLHS 484 Query: 545 RRNISLERFIFSLGIRHVG 563 R + ++ ++G+ G Sbjct: 485 ARERPFQTWLKAIGLPPTG 503 >gi|293393631|ref|ZP_06637941.1| NAD-dependent DNA ligase adenylation domain protein [Serratia odorifera DSM 4582] gi|291423966|gb|EFE97185.1| NAD-dependent DNA ligase adenylation domain protein [Serratia odorifera DSM 4582] Length = 566 Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 118/541 (21%), Positives = 220/541 (40%), Gaps = 81/541 (14%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG-PLNKI 78 E+++LEQ+++ D YYQ + +I D YD+L+++ + A S D + P + Sbjct: 37 EMTALEQQLTRWDVAYYQQGQGLIDDELYDSLRQKL----RLWQSCAGSGDGDALPALPV 92 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G K H + L K+ D + + W + D ++PK+DG Sbjct: 93 G--------KTPHPVAHTGLRKL---ADRQAVVQ-----WMRGRDA---LWVQPKVDGVA 133 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +T+ Y++G + A RGDG GED +++IP +P L + PE + ++GE+++ D Sbjct: 134 VTLVYQRGTLIGAISRGDGKQGEDWLEKVKSIPAVPSSLP-DAPERVVLQGELFLIMTD- 191 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 + + + G N R+ +G L R P+ + + FV G A E L Sbjct: 192 ---HQQNLTGG----VNARSRVAGALLRQRPSPLLAQIGLFVWGWPDGPATMA----ERL 240 Query: 259 QKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 +++ LGFP+ R N G+ + + ++ LP+ DG+V D + Sbjct: 241 RQLATLGFPLAQAYTRSVNDVDGVEHWRSHWH--QNPLPFVTDGVVIHQDSPPQGRYW-- 296 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 R + W ++ K+ Q R+ + +IGRTG + V L+P+ + ++ Sbjct: 297 RNKPAEWAVAWKYPAVQQVARVNKVIFRIGRTGKIAVVLALDPIRL-----------DDK 345 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 +++ ++ + + GD V + G IP + D++ R + QP + P Sbjct: 346 WVRRVNVGSLPLWQQLNALPGDHVAISLQGHGIPYLRDVV--WRAVERQPLTVPD-ANRY 402 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 + +L P C Q + RL N+ G+ + + Sbjct: 403 HALSCFELQP---------------GCRQQLIARLVWLSGAQGLNLRGVNEASWQALIEQ 447 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 ++ D TL +Q + + G G ++Y R R++ +L Sbjct: 448 S----LVKNLVDWLTLTPQQ------LMAVPGIGHKRAQDIYQQFRLARQRPFARWLIAL 497 Query: 558 G 558 G Sbjct: 498 G 498 >gi|298489227|ref|ZP_07007245.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156246|gb|EFH97348.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 561 Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 124/557 (22%), Positives = 232/557 (41%), Gaps = 92/557 (16%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR E+++L+Q+++ DD Y++ I D YD +++ + F DP Sbjct: 32 KARSEVTNLQQQMAAWDDSYHRQGISHIPDELYDQARQKLNLWRSCFAVSTPEADP---- 87 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 + ++ + H + + K+ + ++ ++ K N ++ ++PK+D Sbjct: 88 ------LKTAVGPLPHPVAHTGVNKLADESSVKDWL---------KGRNDLW--IQPKVD 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ YEKG+ V A RGDG G+D ++ R I IP+ LS + I++ GE+Y Sbjct: 131 GVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIPQHLSHHDSLILQ--GELYWRL 188 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKG 253 D + + N R+ +G+L R ++P + FV + G Sbjct: 189 TDHIQATSGSV--------NARSKVAGMLARQTISPQQ-ADAIGLFVWD-------WPNG 232 Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +M Q+ ++ +GF + + H + + E R+ LP+ DG++ + + Sbjct: 233 PTDMAQRLAGLQAMGFEGSEAYTHSLENHVQAARWRE-HWYRNPLPFATDGVIMRQGQRP 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ +A +P W+ + K QA + + IGR+G +TPV L PV + Sbjct: 292 PMQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRL------- 342 Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 +D ++G + R DIR GD+V V AG IP++ +I Sbjct: 343 -----DDRTVSRISTGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRA--------- 388 Query: 430 FPSFCPICQSRVVRDLNPKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + V + P+ ++ + T G C +Q RL + + G+G Sbjct: 389 ---------AERVEMITPQADDFHELSCWQATPG--CESQFRARLIWLSGKKGLALPGVG 437 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 D ++ I D TL T++ NI GF + S L S+ R Sbjct: 438 PGTWDKLIENGQ----IESLLDWMTLNH------TELANIPGFAERSSAKLLASLQTARE 487 Query: 548 ISLERFIFSLGIRHVGA 564 + ++ ++G+ G+ Sbjct: 488 RPFQTWLKAIGLPPTGS 504 >gi|251791698|ref|YP_003006419.1| NAD-dependent DNA ligase LigB [Dickeya zeae Ech1591] gi|247540319|gb|ACT08940.1| DNA ligase (NAD(+)) [Dickeya zeae Ech1591] Length = 560 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 139/610 (22%), Positives = 253/610 (41%), Gaps = 115/610 (18%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P A S +A +E++ L Q+++ D+ YY+ + + D YD L++ F + Sbjct: 22 PCPAWSSARAEREVTQLGQQLTQWDNAYYEQGRSPVDDQVYDQLRQTLATWQRCFQ--SD 79 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 +E L+ G K +H + L+K+ +L++++ R W Sbjct: 80 TERFAIRLSSTG--------KQSHPVAHTGLKKLSEPTELKQWVARHDGLW--------- 122 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIE 186 ++PKIDG +T+ YE+GK V A RG+G GED + +R I +P+ LS ++ +I + Sbjct: 123 --VQPKIDGVAVTLVYEQGKLVSAVSRGNGRQGEDWTDKVRQINAVPQALSGMSGRQIFQ 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246 GE+Y+ + + + ++ G N R +G +RR P+ + L F+ Sbjct: 181 --GELYLPVTE----HRQYVSGG----INARAQVAGEMRRKQPSPLLSRLGVFIWA---- 226 Query: 247 SEIFAKGQYEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 + G +M L K+R +GF + QA + + + E + R+ LP+ DG+V Sbjct: 227 ---WPDGPADMPTRLAKLREMGFGLTADYTQAISSLEAAAQWRE-RWYRAPLPFVTDGVV 282 Query: 304 YKVDEFSLQKQLGERARSP-RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 + + + + +P W ++ K+ T + +D++IGRTG +T V +L+PV Sbjct: 283 LRQAKEPAGRYWQD---TPAEWAVAWKYPLMNQVTEVTGVDVEIGRTGRMTVVLQLQPVM 339 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII---- 417 + ++ L G V R + D+ GDRV + AG IP++ ++ Sbjct: 340 LDDKSVSRVNL------------GSVGRWRQWDVLPGDRVSISLAGLGIPRLDAVVWRAA 387 Query: 418 VNER--HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 V E P PF F + SR C Q L RL Sbjct: 388 VRESITVPAVSPFDV--FSCLQWSR----------------------ECQPQFLARLVWM 423 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 R+ ++ G+ + + A + L+ Q + F + Sbjct: 424 SGRNGLSLSGISEATWRRLAQRGTLADVV----SWLALEPAQLAAAGD------FNEQQA 473 Query: 536 TNLYDSINKRRNISLERFIFSLGI------RHV--GAEIARSLAKYYLSYQNF------- 580 +Y + + R L R++ +LG+ R+ GA + + + + +Q F Sbjct: 474 ARIYRQLQQARRQPLRRWLLALGLPVPSSARYALEGASLEQLQQRSIVEWQQFSGIGARR 533 Query: 581 AQEINNIIAH 590 AQ I + + H Sbjct: 534 AQRIRDFLHH 543 >gi|242241341|ref|YP_002989522.1| NAD-dependent DNA ligase LigB [Dickeya dadantii Ech703] gi|242133398|gb|ACS87700.1| DNA ligase (NAD(+)) [Dickeya dadantii Ech703] Length = 575 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 127/554 (22%), Positives = 224/554 (40%), Gaps = 86/554 (15%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 + S +A +E+ L +++ D YY + I D YD L++R + F ++ Sbjct: 28 SWSALRAEQEMERLGHQLAVWDRAYYGAGESQIDDHTYDQLRKRLETWQACF-HADQTAF 86 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P PL G K H + L+K+ +LR++I + W + Sbjct: 87 PI-PLPTEG--------KTPHPVAHTGLKKLSEAGELRRWIAQHRGLW-----------V 126 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PKIDG +T+ YE+GK V A RG+G+ GED + +R +P +P+ L P+ + ++GE Sbjct: 127 QPKIDGVAVTLVYEQGKLVSAVSRGNGYRGEDWTEKVRRMPQVPQQLP-TAPDQLVLQGE 185 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +Y+ D AN R +G +RR P+ + + FV + Sbjct: 186 LYLGMPGHRQQQDGG--------ANARARVAGEMRRSQPSSLASRIGVFVWEWPDGPQSM 237 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L ++R LGF + Q T + + E + R LP+ DG+V + + Sbjct: 238 P----ERLSQLRSLGFEMTERYTQPITTLEDAARWRE-RWYREPLPFATDGVVLRQAQEP 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 + + + W ++ K+ + T + ++I +GRTG + V L+P+ + I Sbjct: 293 AARYW--QNKPAEWAVAWKYPLTRLVTEVEGVEIAVGRTGNMAVVLTLQPLTLDDKTIRR 350 Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 + G + R + D+ GD+V + AG+ IP+ +D +V R +P S Sbjct: 351 VNV------------GSISRWRQWDVLPGDQVSIGLAGQGIPR-LDAVV-WRTSVREPMS 396 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK- 488 P + + T C +Q + RL + + G+G+ Sbjct: 397 VPENVGFSEFTCL----------------TWREGCRSQFIARLVWLSGKRGLGLTGVGEG 440 Query: 489 --QQLDFFFKSEDPAFSIRI-PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 Q+L D + + PA + L G G +Y + Sbjct: 441 VWQRLVLRGMLPDVVSWLALTPAQLIGLG--------------GLGATQGEKVYQQFQRA 486 Query: 546 RNISLERFIFSLGI 559 R L R++ +LGI Sbjct: 487 RRQPLSRWLMALGI 500 >gi|148989162|ref|ZP_01820552.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP6-BS73] gi|147925385|gb|EDK76463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP6-BS73] Length = 251 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 137/253 (54%), Gaps = 29/253 (11%) Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTK 523 C AQ +E L HF SRDA NI GLG ++ F A ++ ADI+ LQ Sbjct: 17 CPAQIMEGLIHFASRDAMNITGLGPSIVEKLF----AANLVKDVADIYRLQE-------- 64 Query: 524 IENIL---GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF 580 E+ L G + S LY +I + S E+ +F LGIRHVG++ ++ L +Y+ S +N Sbjct: 65 -EDFLLLEGVKEKSAAKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLLLQYFHSIENL 123 Query: 581 AQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE 640 Q + +A + +G +IA+++ ++ + + L KE ++ Sbjct: 124 YQADSEEVAS----------IESLGGVIAKSLQTYFAAEGSEILLREL-KETGVNLNYKG 172 Query: 641 KNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 + V ++ + +V TG L++++R +A+ + LGA V+ +S+KTD+++VG + GSKL Sbjct: 173 QTVVADAALSGLTVVLTGKLERLKRSEAKSKLESLGAKVTGSVSKKTDLVVVGADAGSKL 232 Query: 699 EKAQQLGVKIMNE 711 +KAQ+LG+++ +E Sbjct: 233 QKAQELGIQVRDE 245 >gi|146309759|ref|YP_001174833.1| NAD-dependent DNA ligase LigB [Enterobacter sp. 638] gi|257096556|sp|A4W502|LIGB_ENT38 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|145316635|gb|ABP58782.1| DNA ligase (NAD(+)) [Enterobacter sp. 638] Length = 556 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 150/624 (24%), Positives = 247/624 (39%), Gaps = 123/624 (19%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A +E++ L +IS +D Y+Q K + D YD L R F +ED Sbjct: 22 AWSHAKAEQEIAGLNAQISRWNDAYWQEGKSDVSDEIYDQLNTRLKQWQQCFNHEPATED 81 Query: 71 ---PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 NG L H + K+ E+LR+++ W Sbjct: 82 IPPANGTLR--------------HPFAHTGVHKVSGKEELRQWMHSRRDLW--------- 118 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE- 186 ++PK+DG +T+ Y KGK V A RGDG GED +A ++AIP++P LN+ ++ Sbjct: 119 --VQPKVDGVAVTLVYRKGKLVQAISRGDGVKGEDWTARVQAIPSVP----LNVKGVLSE 172 Query: 187 --VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLG 244 ++GE+++ + +M + N R +G++ R N + L F+ Sbjct: 173 SVLQGEIFLRCERH--IQQQMGGM------NARAKVAGMMMRQNNKTVLENLGVFIWA-- 222 Query: 245 KTSEIFAKGQYEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 + G M Q++ L GF + +A + V N + + S+LP+ DG Sbjct: 223 -----WPDGPQSMPQRLSELTKAGFTLTAQYTRAVSTADEVE-KNRKEWLTSSLPFVTDG 276 Query: 302 LVYK--VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 +V + ++ Q GE W+++ K++ + I IGRTG ++ VA LE Sbjct: 277 IVVRSSIEPVGEQWLPGEG----DWVVAWKYSPVSQVAEVNAIQFAIGRTGKISVVAVLE 332 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV- 418 + + + L + + L DI GD++LV AG+ IP+V ++ Sbjct: 333 SIQLDDKRVKRVNLGSVSRWQAL-----------DIAPGDQILVSLAGQGIPRVDKVVWR 381 Query: 419 -NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA---CSAQQLERLKH 474 N+R A P S H T A C Q RL Sbjct: 382 GNDRKKPAPPAS------------------------QYHSLTCFYASPECLEQFFARLVW 417 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 S+ N+EGLG ++ F IF+ Q +IE G Sbjct: 418 LSSKQILNMEGLGDSSWRLLHQTYH--FE-----HIFSWLAVTQ---EQIEKTSGLNPAR 467 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 L+ R+ +++I +LGI A A LS ++ Q + D Sbjct: 468 RLQLWHRFELARHHPFKKWIKALGIPLPQA------AADALSVHSWRQ-------LQDKD 514 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQN 618 +S ++P +G A+ +VEF + Sbjct: 515 AVSWNQLPGIGTEKARKLVEFVHD 538 >gi|289672514|ref|ZP_06493404.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae FF5] Length = 561 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 122/563 (21%), Positives = 232/563 (41%), Gaps = 96/563 (17%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +AR E+++L+Q+I+ DD Y++ I D YD +++ F A S Sbjct: 28 WSAAKARSEITALQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSCF---AVSTPE 84 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + PL G + H +P + K+ + ++ ++ K N ++ ++ Sbjct: 85 SNPLKTAVGPL-------PHPVPHTGVNKLADEGSVKDWL---------KGRNDLW--IQ 126 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG +T+ YE+G+ V A RGDG G+D ++ R I TIP+ L +++ GE+ Sbjct: 127 PKVDGVAVTLVYEQGQLVQAISRGDGRKGQDWTSQARLIKTIPQQLPQAESPVLQ--GEL 184 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEI 249 Y +D + + N R+ +G+L R ++P + FV Sbjct: 185 YWRLDDHIQAASGSV--------NARSKVAGLLARQTISPQQ-ADAIGLFVWD------- 228 Query: 250 FAKGQYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + G +M Q+ ++ +GF + + + + E R+ LP+ DG++ + Sbjct: 229 WPNGPADMAQRLAGLQAMGFEDSAAYTHPLQNYAQAARWRE-HWYRNPLPFATDGVIMRQ 287 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + ++ +A +P W+ + K QA + ++ +IGR+G +TPV L PV + Sbjct: 288 GQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDR 345 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ + + + L DIR GD+V V AG IP++ ++ Sbjct: 346 TVSRISTGSLQRWQTL-----------DIRPGDQVAVSLAGLTIPRLDGVV--------- 385 Query: 427 PFSFPSFCPICQSRVVRDLN---PKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAF 481 SR + P+ ++ + T G C +Q RL + Sbjct: 386 ------------SRAAERADMIIPRADDFHELSCWQATPG--CESQFRARLAWLSGKKGL 431 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 + G+G + ++ I L + ++ NI GF + S L DS Sbjct: 432 ALPGVGPGTWNTLIEN----------GQIMGLLDWMTLNHAELVNIPGFAERSSAKLLDS 481 Query: 542 INKRRNISLERFIFSLGIRHVGA 564 + R + ++ ++G+ G Sbjct: 482 LQTARERPFQTWLKAIGLPPTGG 504 >gi|238784014|ref|ZP_04628030.1| DNA ligase B [Yersinia bercovieri ATCC 43970] gi|238715122|gb|EEQ07118.1| DNA ligase B [Yersinia bercovieri ATCC 43970] Length = 553 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 132/567 (23%), Positives = 246/567 (43%), Gaps = 86/567 (15%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA--IAHAFPDLARSE 69 S E+ E++SL++++ D Y+Q ++ D YD L+ + + PD +E Sbjct: 18 WSAERVSLEVNSLKKQLDKWDAAYHQQGVSLLEDDIYDQLQIKLQGWQVCGGQPD--STE 75 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P + K +H + L+K+ + ++ ++ R + W Sbjct: 76 NKGVPGHG----------KFSHPVAHTGLKKLKSETEVANWMLRREKLW----------- 114 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y+ GK + RGDG G++ S I IP ++ P ++ ++G Sbjct: 115 VQPKVDGVAVTLVYQNGKLMQLLSRGDGWKGQNWSDKAPFIAAIPHYIA-GAPPLLTLQG 173 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + G N R++ +G L R + + + L F+ Sbjct: 174 ELFLQME-----GHKQAQFGG---VNARSSVAGALMRKSSSPLLAQLGIFIWA------- 218 Query: 250 FAKGQYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + G M++K ++ +GFP+ + T V+ + E + ++ LP+ DG+V + Sbjct: 219 WPDGPKSMVEKNMRLQDMGFPLTAQYSKPVTSAKDVARWRE-RWHQTPLPFVTDGVVIRQ 277 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 +E + +A W ++ K+ +Q + DI IGRTG +T V ++ PV I Sbjct: 278 EEEPAGRYW--QAVPGPWSVAWKYPPQQQMAEIKDIQFTIGRTGKITVVLQVSPVKI--- 332 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH-- 422 ++ +I+ ++ DI GD+V + AG+ IP++ +++ VN+RH Sbjct: 333 --------DDKWIRRVNIGSIARWRQWDITTGDQVTITLAGQSIPRLNNVVWRVNQRHKF 384 Query: 423 --PDAQPF-------SFPSFC-PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERL 472 PD F + P C P SR++ PK + H +GGL E + Sbjct: 385 TPPDGDKFHQLSCFRNLPYECEPQFLSRLIWLSGPKG---LNMHNISGGLW-----RELI 436 Query: 473 KHFVSRDAFNIEGLGKQQL-DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 H + +D L Q+ D S D A SI QR Q ++ LGF Sbjct: 437 HHGLVKDLVGWLSLTPDQIADIPGISRDRAESI-----YQQFQRTTQKPFSQWLQALGFP 491 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLG 558 V+ +N + +R++I+ R + +G Sbjct: 492 LVTFSNGHWHSLQRKSIAEWRLMPGVG 518 >gi|149911106|ref|ZP_01899733.1| DNA ligase, NAD-dependent, putative [Moritella sp. PE36] gi|149805856|gb|EDM65845.1| DNA ligase, NAD-dependent, putative [Moritella sp. PE36] Length = 413 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/404 (23%), Positives = 185/404 (45%), Gaps = 47/404 (11%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + +S LE +I H YY P++ D E+D L ++H + L + Sbjct: 50 QHRISYLETQIIKHRRIYYAGQTPLLHDGEFDLLVDELTVLSHCLSPV---------LTQ 100 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 IGG NL +++ ++ +R+ T + +F+Q D + ++PK DG Sbjct: 101 IGGG-NLQHNDTRQRDRQPHRQQMLSLNSVRER-TAVDKFYQLHQDQQLL--IQPKFDGM 156 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 I + YEKG V A+ RGDG G+D+ A + + +++ P + + GE+Y+ + D Sbjct: 157 AIELVYEKGMLVGASSRGDGKQGKDLLALMLRSNAVNSMIA--YPYTLVIHGELYVGQQD 214 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNP--TDIT--RYLNFFVHGLGKTSEIFAKG 253 + R Y + R+ +GI +L+P TD+ R++ + +E+ Sbjct: 215 WQL---------RGKYVSSRHMTAGIASQLSPAQTDVMSLRFMPWRWIDSPYNNELMGLA 265 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Q ML GF + + + Y+ + ++T + +DG+V K+ +LQ+ Sbjct: 266 QLAML------GFADMSKMSHVIDRPQDIDYW--LAHYQNTEAFLLDGIVLKLANNTLQR 317 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 Q G +PRW ++ KF + + ++DI Q+G++G +TP+ ++P+ + G +T + Sbjct: 318 QYGHTQHAPRWALALKFTGPKGLSNVIDITYQVGKSGRVTPIIHVQPLALSGRQVTRVSG 377 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 ++ ++ I VG +V ++ G P++ ++ Sbjct: 378 RSQPWLL-----------QSKIEVGSQVEIELVGNATPQLTRLV 410 >gi|28867612|ref|NP_790231.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|81840358|sp|Q88AK8|LIGB_PSESM RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|28850847|gb|AAO53926.1| DNA ligase, NAD-dependent, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 561 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 126/560 (22%), Positives = 227/560 (40%), Gaps = 92/560 (16%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +A E+++L+Q+I+ DD Y++ I D YD +++ + F A S Sbjct: 28 WSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCF---AVSTPQ 84 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 PL G + H +P + K+ + +D++ ++ W ++ Sbjct: 85 ANPLKTATGPL-------AHPVPHTGVNKLADEKDVKAWLKGRTDLW-----------IQ 126 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG +T+ Y++G+ V A RGDG G+D + R I IP+ L P+ + ++GE+ Sbjct: 127 PKVDGVAVTLVYDEGRLVQAISRGDGTQGQDWTPQARLIKAIPQ--QLPQPDSLILQGEL 184 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEI 249 Y D + + N R+ +G+L R ++P + FV Sbjct: 185 YWRLTDHVQAASGSV--------NARSKVAGMLARQTISPQQ-ADAIGLFVWD------- 228 Query: 250 FAKGQYEMLQK---MRCLGFPVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGLVY 304 + G +M Q+ ++ +GF N+ V + H + + E R+ LP+ DG++ Sbjct: 229 WPDGPADMAQRLAGLQAMGF--NHSVAYTHPLENHAQAADWRE-HWYRNPLPFATDGVIM 285 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + ++ +A +P W+ + K QA + + IGRTG + PV L PV + Sbjct: 286 RQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRL- 342 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 +D ++G + R + DIR GD + V AG IP++ ++ R Sbjct: 343 -----------DDRTVSRISAGSLSRWEKLDIRPGDHIAVSLAGLTIPRLDGVV--SRAA 389 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + S P +S + C +Q RL + + Sbjct: 390 ERAEMSVPHASDYHESSCWQ----------------AAPGCESQFRARLVWLSGKKGLAL 433 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 G+G D +S I D TL ++ NI G + S L DS+ Sbjct: 434 PGVGPGTWDKLIESG----HISGLLDWMTLNH------AELANIPGLAERSSDKLLDSLQ 483 Query: 544 KRRNISLERFIFSLGIRHVG 563 R + ++ ++G+ G Sbjct: 484 TARERPFQTWLKAIGLPPAG 503 >gi|257482942|ref|ZP_05636983.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011813|gb|EGH91869.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 561 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 126/557 (22%), Positives = 233/557 (41%), Gaps = 92/557 (16%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR E+++L+Q+++ DD Y++ I D YD +++ F A S+ + PL Sbjct: 32 KARSEVTNLQQQMAAWDDSYHRQGLSKIPDELYDQARQKLSVWRSCF---AISKPESDPL 88 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 G + H +P + K+ + + ++ ++ K N ++ ++PKID Sbjct: 89 TTAVGPL-------PHPVPHTGVNKLEDEDSVKAWL---------KGRNDLW--IQPKID 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ YEKG+ V A RGDG G+D ++ R I IP+ L + I++ GE+Y Sbjct: 131 GVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIPQRLPHHDSLILQ--GELYWRL 188 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKG 253 D + + N R+ +G+L R ++P + FV + G Sbjct: 189 TDHIQATSGSV--------NARSKVAGMLARQTISPQQ-ADAIGLFVWD-------WPNG 232 Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +M Q+ ++ +GF + + H + + E R+ LP+ DG++ + + Sbjct: 233 PTDMAQRLSGLQAMGFEGSEAYTLSLENHVQAARWRE-HWYRNPLPFATDGVIMRQGQRP 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ +A +P W+ + K QA + + +GR+G +TPV L PV + Sbjct: 292 PAQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRL------- 342 Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 +D ++G + R DIR GD+V V AG IP++ +I Sbjct: 343 -----DDRTVSRISTGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRA--------- 388 Query: 430 FPSFCPICQSRVVRDLNPKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + V + P+ ++ + T G C +Q RL + + G+G Sbjct: 389 ---------AERVEMIIPQADDFHELSCWQATPG--CESQFRARLIWLSGKKGLALPGVG 437 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 D ++ I D TL ++ NI GF + S L S+ R Sbjct: 438 PGTWDKLIENGQ----IESLLDWMTLNH------AELANIPGFAERSSAKLLASLQTARE 487 Query: 548 ISLERFIFSLGIRHVGA 564 + ++ ++G+ G+ Sbjct: 488 RPFQTWLKAIGLPPTGS 504 >gi|148550043|ref|YP_001270145.1| NAD-dependent DNA ligase LigB [Pseudomonas putida F1] gi|257096559|sp|A5WA01|LIGB_PSEP1 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|148514101|gb|ABQ80961.1| DNA ligase (NAD(+)) [Pseudomonas putida F1] Length = 566 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 106/408 (25%), Positives = 187/408 (45%), Gaps = 55/408 (13%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +QA+ E++ L ++ D+ Y++ ++ D YD + R + + F A P+ Sbjct: 27 SPQQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSRERLNHLQQCF---AVGTSPS 83 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 PL G V H +P ++K+ + + + +++ W ++P Sbjct: 84 -PLASARG-------PVPHPVPHTGVDKLADRQAVARWMAGKSGVW-----------VQP 124 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGE 190 K+DG +++ Y++G+ V RGDG +G D S R IP + V + +PE +++ +GE Sbjct: 125 KVDGVAVSLTYQQGRLVQLTSRGDGVNGHDWS---RHIPQLDAV-TRQLPEALDLHLQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI 249 +Y L L+D + A + AN R +G+L R T + FV G E Sbjct: 181 LY------LRLSDHVQA--KAGSANARGTVAGLLARKQLTGAQGNAIGLFVWGWPHGPE- 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 Q E L ++ LGFP + A +++ E RS LP+ DG++ + Sbjct: 232 ---QQAERLAQLARLGFPDSQLYSIAIDTLEDAAHWRE-HWYRSALPFATDGVILRQSSR 287 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++ +A++P W+ + K+ QA + D+ ++GRTG +TPV L PV + IT Sbjct: 288 PPAERW--QAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHLLPVTLDDRRIT 345 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 +L + L DIR GD+V + AG IP++ ++ Sbjct: 346 QVSLGSLARWHTL-----------DIRPGDQVAISLAGLTIPRLEQVV 382 >gi|254673677|emb|CBA09272.1| DNA ligase [Neisseria meningitidis alpha275] Length = 414 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 103/392 (26%), Positives = 168/392 (42%), Gaps = 107/392 (27%) Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P +P+ P+ CPIC+S + R+ G+ VA RC+GG+ C AQ+ + L HF SR A + Sbjct: 33 PLYKPYRLPTHCPICRSEIERE----EGEAVA--RCSGGMLCQAQRAQGLIHFASRKAMD 86 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIF-----TLQRRQQTS--TTKIENILGFGDVSV 535 I+GLG++Q++ + +R AD++ TLQ+ ++T+ T + + SV Sbjct: 87 IDGLGEKQIEQLVAQD----LVRHFADLYRLDIPTLQKMKETADKTVAESDQMPSEGSSV 142 Query: 536 --------------TNLYDSINKRRNISLERFIFSLGIRHV------------------- 562 N+ I + L RF+F+LGIRHV Sbjct: 143 GASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAKTLAQAFGTLERVR 202 Query: 563 -------------GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL------ 603 G +ARS+A ++ + A I+ ++A + +P Sbjct: 203 RAPEPVLACLPDIGTVVARSIAHFFAQAEQQAM-IDELLAAGVAPQAQAVSLPAAQYAEP 261 Query: 604 -----------VGDIIAQAIVEF-----------------YQNPRNICAVEALLKEVS-- 633 + + AQA+ E +Q R+ ALL+ + Sbjct: 262 QRWIARLPGFKISENKAQALWELAGKSIEGLQTDKSLPADWQAWRSEPQNAALLENLKTF 321 Query: 634 ----PS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 PS + ++ + K V TGTL ++R +AQ + G VS +S+KTD Sbjct: 322 FAQMPSEDEAAQGSDGINEAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGKVSGSVSKKTD 381 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ G+ GSKLEKA LGV +++E + L LL Sbjct: 382 YVVAGEAAGSKLEKANALGVSVLSEAELLTLL 413 >gi|213967844|ref|ZP_03395991.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1] gi|301382481|ref|ZP_07230899.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato Max13] gi|302062268|ref|ZP_07253809.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato K40] gi|302132915|ref|ZP_07258905.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927620|gb|EEB61168.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1] Length = 563 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 129/560 (23%), Positives = 229/560 (40%), Gaps = 92/560 (16%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +A E+++L+Q+I+ DD Y++ I D YD +++ + F A S Sbjct: 30 WSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCF---AVSTPQ 86 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 PL G + H +P + K+ + +D++ ++ W ++ Sbjct: 87 ANPLKTATGPL-------AHPVPHTGVNKLADEKDVKAWLKGRTDLW-----------IQ 128 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG +T+ Y++G+ V A RGDG G+D + R I IP+ L P+ + ++GE+ Sbjct: 129 PKVDGVAVTLVYDEGRLVQAISRGDGTQGQDWTPQARLIKAIPQ--QLPQPDSLILQGEL 186 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEI 249 Y D + + N R+ +G+L R ++P + FV Sbjct: 187 YWRLTDHVQAASGSV--------NARSKVAGMLARQTISPQQ-ADAIGLFVWD------- 230 Query: 250 FAKGQYEMLQK---MRCLGFPVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGLVY 304 + G +M Q+ ++ LGF N+ V + H + + E R+ LP+ DG++ Sbjct: 231 WPDGPADMAQRLAGLQALGF--NHSVAYTHPLENHAQAADWRE-HWYRNPLPFATDGVIM 287 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + ++ +A +P W+ + K QA + + IGRTG + PV L PV + Sbjct: 288 RQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRL- 344 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 +D ++G + R + DIR GD + V AG IP++ ++ R Sbjct: 345 -----------DDRTVSRISAGSLSRWEKLDIRPGDHIAVSLAGLTIPRLDGVV--SRAA 391 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + S P D + +L G C +Q RL + + Sbjct: 392 ERAEMSVPH---------ASDYH----ELSCWQAAPG---CESQFRARLVWLSGKKGLAL 435 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 G+G D +S I D TL ++ NI G + S L DS+ Sbjct: 436 PGVGPGTWDKLIESG----HISGLLDWMTLNH------AELANIPGLAERSSDKLLDSLQ 485 Query: 544 KRRNISLERFIFSLGIRHVG 563 R + ++ ++G+ G Sbjct: 486 TARERPFQTWLKAIGLPPAG 505 >gi|238797649|ref|ZP_04641145.1| DNA ligase B [Yersinia mollaretii ATCC 43969] gi|238718513|gb|EEQ10333.1| DNA ligase B [Yersinia mollaretii ATCC 43969] Length = 565 Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 126/565 (22%), Positives = 244/565 (43%), Gaps = 82/565 (14%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S E+ E+ SL++++ D Y+Q ++ D YD L+ + + R + + Sbjct: 31 STERVSLEVHSLQKQLDQWDAIYHQQGVSLLTDDLYDQLQAKLQGW-----QVCRGQPDD 85 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 ++ G K +H + L+K+ + +L ++ R + W ++P Sbjct: 86 TENRRVPGHG-----KFSHPVAHTGLKKLKDEAELANWMQRREKIW-----------VQP 129 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ Y+ GK RGDG G++ S I IP+ ++ P ++ ++GE++ Sbjct: 130 KVDGIAVTLVYQNGKLAQLLSRGDGLKGQNWSDKASFITAIPQTIAAAAP-MLTLQGELF 188 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK 252 + + + G N R++ +G L R + + + L F+ + Sbjct: 189 LQRE-----GHKQAQFGG---VNARSSVAGALMRKSSSPLLAQLGIFIWA-------WPD 233 Query: 253 GQYEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 G M++K R L GFP+ + + V+ + E + ++ LP+ DG+V + +E Sbjct: 234 GPKSMMEKNRRLQKMGFPLTAQYSKPVSSAKDVAQWRE-RWYQTPLPFVTDGVVIRQEEE 292 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + +A W ++ K+ +Q T + DI IGRTG +T + ++ PV I Sbjct: 293 PAGRYW--QAVPGPWSVAWKYPPQQKMTEIKDIHFTIGRTGKITVILQVSPVKI------ 344 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH----P 423 ++ +I+ ++ DI +GD+V + AG+ IP++ +++ V++RH P Sbjct: 345 -----DDKWIRRVNIGSIARWRQWDITLGDQVTIALAGQGIPRLDNVVWRVSQRHELTPP 399 Query: 424 DAQPF-------SFPSFC-PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 + F P C P SR++ PK + R GG E + H Sbjct: 400 ERDKFHQLSCFRHLPHECEPQFLSRLIWLSGPKGLDM----RSIGGGLWR----ELIHHG 451 Query: 476 VSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIF-TLQRRQQTSTTKIENILGFGDVS 534 + +D L QL ++ P S+ DI+ QR +Q ++ LGF V Sbjct: 452 LVKDLVGWLSLTTDQL-----ADIPGVSLERAEDIYQQFQRAKQKPFSQWLQALGFPRVV 506 Query: 535 VTNLYDSINKRRNISLERFIFSLGI 559 ++ + +R++I+ +G+ Sbjct: 507 SSDDHWHALQRKSITEWSLASGVGL 531 >gi|330989493|gb|EGH87596.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. lachrymans str. M301315] Length = 561 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 128/560 (22%), Positives = 232/560 (41%), Gaps = 92/560 (16%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +AR E+++L+Q+++ DD Y++ I D YD +++ F A S+ + Sbjct: 29 SAAKARSEVTALQQQVAAWDDSYHRQGLSKIPDELYDQARQKLSVWRSCF---AISKPES 85 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 PL G + H +P + K+ + + ++ ++ W ++P Sbjct: 86 DPLTTAVGPL-------PHPVPHTGVNKLEDEDSVKAWLKGRKDLW-----------IQP 127 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 KIDG +T+ YEKG+ V A RGDG G+D ++ R I IP+ L I++ GE+Y Sbjct: 128 KIDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIPQNLFHRDSLILQ--GELY 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIF 250 L D + A+ N R+ +G+L R ++P + FV + Sbjct: 186 WR------LTDHIQAISGS--VNARSKVAGMLARQTISPQQ-ADAIGLFVWD-------W 229 Query: 251 AKGQYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 G +M Q+ ++ +GF + + H + + E R+ LP+ DG++ + Sbjct: 230 PNGPTDMAQRLAGLQAMGFEGSEAYTLSLENHVQAARWRE-HWYRNPLPFATDGVIMRQG 288 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ +A +P W+ + K QA + + +GR+G +TPV L PV + Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRL---- 342 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +D ++G + R DIR GD+V V AG IP++ +I Sbjct: 343 --------DDRTVSRISTGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRA------ 388 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 + V + P+ ++ + T G C +Q RL + + Sbjct: 389 ------------AERVEMIIPQADDFHELSCWQATPG--CESQFRARLIWLSGKKGLALP 434 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G D ++ I D TL ++ NI GF + S L S+ Sbjct: 435 GVGPGTWDKLIENGQ----IESLLDWMTLNH------AELANIPGFAERSSAKLLASLQT 484 Query: 545 RRNISLERFIFSLGIRHVGA 564 R + ++ ++G+ G+ Sbjct: 485 ARERPFQTWLKAIGLPPTGS 504 >gi|237756712|ref|ZP_04585213.1| DNA ligase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691122|gb|EEP60229.1| DNA ligase [Sulfurihydrogenibium yellowstonense SS-5] Length = 215 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 76/201 (37%), Positives = 116/201 (57%), Gaps = 12/201 (5%) Query: 524 IENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE 583 I+NI GFG SV NL ++I + + L R I+ LGIR+VG A++LA + + Sbjct: 25 IKNIPGFGPKSVENLKNAIEESKKRPLYRLIYGLGIRYVGEVTAKTLA-------SAVKC 77 Query: 584 INNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV 643 I+++ D LI++P VGD +A I F+ N +N+ ++ L +++ E+ Sbjct: 78 IDDLKDFTITD---LIKLPDVGDKVASEIYNFFHNQQNLKMIQEL-RDLGVKTCHEEEEK 133 Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 ++ VFTGTL+ R KA+E V LG V +S+K ++VG+ PGSKL+KAQ+ Sbjct: 134 KGKLAGLNFVFTGTLKCCSREKAKEIVESLGGNVLDTVSKKVHYLVVGEEPGSKLQKAQK 193 Query: 704 LG-VKIMNEEQFLFLLQQYNT 723 LG VKI+NEE+FL L+ N Sbjct: 194 LGTVKIINEEEFLKLIGGENA 214 >gi|330940502|gb|EGH43581.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. pisi str. 1704B] Length = 561 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 122/562 (21%), Positives = 230/562 (40%), Gaps = 96/562 (17%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +AR E+++L+Q+I+ DD Y++ I D YD +++ F A S + Sbjct: 29 SAAKARSEITALQQQIAAGDDSYHRQGISQIPDELYDQARQKLSLWRSCF---AVSTPES 85 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 PL G + H +P + K+ + ++ ++ K N ++ ++P Sbjct: 86 NPLKTAVGPL-------PHPVPHTGVNKLADEGSVKDWL---------KGRNDLW--IQP 127 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ YE+G+ V A RGDG G+D + R I TIP+ L +++ GE+Y Sbjct: 128 KVDGVAVTLVYEQGQLVQAISRGDGRKGQDWTLQARLIKTIPQQLPQAESPVLQ--GELY 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTD---ITRYLNFFVHGLGKTS 247 +D + + N R+ +G+L R ++P I ++ + +G + Sbjct: 186 WRLDDHIQAASGSV--------NARSKVAGLLARQTISPQQADAIGLFVWDWPNGPADMA 237 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 + A Q + P+ N A G +Y R+ LP+ DG++ + Sbjct: 238 QRLAGLQAMGFEDSAAYTHPLQN---YAQAARGREHWY------RNPLPFATDGVIMRQG 288 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ +A +P W+ + K QA + ++ +IGR+G +TPV L PV + Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRT 346 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ + + + L DIR GD++ V AG IP++ ++ Sbjct: 347 VSRISTGSLQRWQTL-----------DIRPGDQIAVSLAGLTIPRLDGVV---------- 385 Query: 428 FSFPSFCPICQSRVVRDLN---PKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 SR + P+ ++ + T G C +Q RL + Sbjct: 386 -----------SRAAERADMIIPRADDFHELSCWQATPG--CESQFRARLAWLSGKKGLA 432 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 + G+G + ++ I L + ++ NI GF + S L DS+ Sbjct: 433 LPGVGPGTWNTLIEN----------GQIMGLLDWMTLNHAELVNIPGFAERSSAKLLDSL 482 Query: 543 NKRRNISLERFIFSLGIRHVGA 564 R + ++ ++G+ G Sbjct: 483 QTARERPFQTWLKAIGLPPTGG 504 >gi|296100486|ref|YP_003610632.1| NAD-dependent DNA ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054945|gb|ADF59683.1| NAD-dependent DNA ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 556 Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 145/618 (23%), Positives = 242/618 (39%), Gaps = 111/618 (17%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +A KE+++L +I DD Y+Q + D YD L R H F + P Sbjct: 23 WSQARAEKEIATLSAQIKRWDDAYWQQGISEVNDEVYDQLNGRLKQWQHCFGHAS----P 78 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + L + G ++ H + + K+ + E+L +++ W ++ Sbjct: 79 DAALPALTG-------RIKHPVAHTGVHKVSSKEELGQWMHARRNLW-----------MQ 120 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG +T+ Y G A RGDG GED ++ +R IP++P+ L + + ++GE+ Sbjct: 121 PKVDGVAVTLVYRGGTLAQAISRGDGLKGEDWTSQVRLIPSVPQHLYGALANSV-LQGEL 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 + + + + +M + N R +G + R R + F+ + Sbjct: 180 FWQRENH--IQQQMGGM------NARAKVAGAMMRQQDNAFLREVGVFIWA-------WP 224 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS-----TLPYDIDGLVYK- 305 G EM + L + G + V + ++ RS LP+ DG+V + Sbjct: 225 DGPKEMKTALAELS---DAGFTLTARYTLPVEHIEAVEKQRSAWHTAALPFATDGIVVRS 281 Query: 306 VDEFSLQKQL-GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 DE + L GE + W+++ K+ + DI +GRTG + VA LEPV + Sbjct: 282 ADELPGENWLPGEGS----WVVAWKYPPVAQVAEVRDIHFTVGRTGKIAVVAGLEPVRLD 337 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 + +L G V R R DI GD++ V AG+ IP+ ++ R Sbjct: 338 DKQVQRVSL------------GSVGRWQRLDIAPGDQIQVSLAGQGIPRFDKVVW--RGT 383 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D Q P P S +P+ C Q RL S+ +I Sbjct: 384 DRQKPEPP--VPQYHSLSCFYASPE---------------CMEQFFARLTWLSSKQGLDI 426 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 GLG+ +++ + FS + L + Q TT GF L+ Sbjct: 427 AGLGESGWRALWQAHRFEHIFS-------WLLLTQAQLQTTP-----GFSAARGLALWHQ 474 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 N R R+I ++G+ A + A LS+Q Q + DW +L Sbjct: 475 FNLVRERPFIRWIMAMGVPLAQATLK---AAGELSWQTMHQR-------SAMDWQTL--- 521 Query: 602 PLVGDIIAQAIVEFYQNP 619 P G+ A+ IV + P Sbjct: 522 PGTGEEKARQIVNWLHAP 539 >gi|330891383|gb|EGH24044.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. mori str. 301020] Length = 561 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 125/556 (22%), Positives = 230/556 (41%), Gaps = 90/556 (16%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR E+++L+Q+++ DD Y++ I D YD +++ F A S+ + PL Sbjct: 32 KARSEVTALQQQVATWDDSYHRQGLSKIPDELYDQARQKLSVWRSCF---AISKPESDPL 88 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 G + H +P + K+ + + ++ ++ W ++PKID Sbjct: 89 TTAVGPL-------PHPVPHTGVNKLEDEDSVKAWLKGRKDLW-----------IQPKID 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ YEKG+ V A RGDG G+D ++ R I IP+ L + I++ GE+Y Sbjct: 131 GVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIKAIPQRLPQHDSLILQ--GELYWR- 187 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKG 253 L D + A+ N R+ +G+ R ++P + FV + G Sbjct: 188 -----LTDHIQAISGS--VNARSKVAGMPARQTISPQQ-ADAIGLFVWD-------WPNG 232 Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +M Q+ ++ +GF + + H + + E R+ LP+ DG++ + + Sbjct: 233 PGDMAQRLAGLQAMGFEGSEAYTHSLENHVQAARWRE-HWYRNPLPFATDGVIMRQGQRP 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ +A +P W+ + K QA + + IGR+G +TPV L PV + ++ Sbjct: 292 PMQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRLDDRTVSR 349 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 + + + L DIR GD+V V AG IP++ +I Sbjct: 350 ISTGSLQRWQTL-----------DIRPGDQVAVSLAGLTIPRLDGVISRA---------- 388 Query: 431 PSFCPICQSRVVRDLNPKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + V + P+ ++ + T G C +Q RL + + G+G Sbjct: 389 --------AERVEMIIPQADDFHELSCWQATPG--CESQFRARLIWLSGKKGLALPGVGP 438 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 D ++ I D TL ++ NI GF + S L S+ R Sbjct: 439 GTWDKLIENGQ----IESLLDWMTLNH------AELANIPGFAERSSAKLLASLQTARER 488 Query: 549 SLERFIFSLGIRHVGA 564 + ++ ++G+ G+ Sbjct: 489 PFQTWLKAIGLPPTGS 504 >gi|289623888|ref|ZP_06456842.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646918|ref|ZP_06478261.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi str. 2250] gi|330869835|gb|EGH04544.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 561 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 121/557 (21%), Positives = 228/557 (40%), Gaps = 92/557 (16%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR E+++L+Q+++ DD Y++ I D YD +++ + F DP Sbjct: 32 KARSEVTNLQQQMAAWDDSYHRQGISHIPDELYDQARQKLNLWRSCFAVSTPEADP---- 87 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 + ++ + H +P + K+ + ++ ++ W ++PK+D Sbjct: 88 ------LKTAVGPLPHPVPHTGVNKLADESSVKDWLKGRKDLW-----------IQPKVD 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ YEKG+ V A RGDG G++ ++ R I IP+ L + I++ GE+Y Sbjct: 131 GVAVTLVYEKGQLVQAISRGDGRKGQNWTSQARLIKAIPQRLPQHDSLILQ--GELYWRL 188 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKG 253 D + + N R+ +G+L R ++P + FV + G Sbjct: 189 TDHIQATSGSV--------NARSKVAGMLARQTISPQQ-ADAIGLFVWD-------WPNG 232 Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +M Q+ ++ +GF + + H + + E R+ LP+ DG++ + + Sbjct: 233 PTDMAQRLAGLQAMGFEGSEAYTHSLENHVQAARWRE-HWYRNPLPFATDGVIMRQGQRP 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ +A +P W+ + K QA + + IGR+G +TPV L PV + Sbjct: 292 PMQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRL------- 342 Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 +D ++G + R DIR GD+V V AG IP++ +I Sbjct: 343 -----DDRTVSRISTGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRA--------- 388 Query: 430 FPSFCPICQSRVVRDLNPKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + V + P+ ++ + T G C +Q RL + + G+G Sbjct: 389 ---------AERVEMIIPQADDFHELSCWQATPG--CESQFRARLIWLSGKKGLALSGVG 437 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 D ++ I D TL ++ NI GF + S L S+ R Sbjct: 438 PGTWDKLIENGQ----IESLLDWMTLNH------AELANIPGFAEHSSAKLLASLQTARE 487 Query: 548 ISLERFIFSLGIRHVGA 564 + ++ ++G+ G+ Sbjct: 488 RPFQTWLKAIGLPPTGS 504 >gi|330874636|gb|EGH08785.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 561 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 128/563 (22%), Positives = 233/563 (41%), Gaps = 98/563 (17%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +A E+++L+Q+I+ DD Y+ I D YD +++ + F A S Sbjct: 28 WSHAKASSEITALQQQIAKWDDSYHLQGLSQIPDELYDQSRQKLNDWRSCF---AVSTPQ 84 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 PL G + TH +P + K+ + +D++ ++ W ++ Sbjct: 85 ANPLKTATGPL-------THPVPHTGVNKLADEKDVKAWLKGRTDLW-----------IQ 126 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI--IEVRG 189 PK+DG +T+ Y++G+ V A RGDG G+D + + I IP+ +P++ + ++G Sbjct: 127 PKVDGVAVTLVYDEGRLVQAISRGDGTKGQDWTPQAQLIKAIPQ----QLPQLGSLILQG 182 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTS 247 E+Y +D + + N R+ +G+L R ++P + FV Sbjct: 183 ELYWRLSDHVQAASGSV--------NARSKVAGMLARQSISPQQ-ADAIGLFVWD----- 228 Query: 248 EIFAKGQYEMLQK---MRCLGFPVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGL 302 + G +M+Q+ ++ LGF N+ V + H + + E R+ LP+ DG+ Sbjct: 229 --WPDGPADMVQRLAGLQTLGF--NDSVAYTHPLENHAQAADWRE-HWYRNPLPFATDGV 283 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 + + + ++ +A +P W+ + K QA + + IGR+G +TPV L PV Sbjct: 284 IMRQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRSGKITPVLELTPVR 341 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNER 421 + +D ++G + R + DIR GD + V AG IP++ ++ R Sbjct: 342 L------------DDRTVSRISAGSLPRWEKLDIRPGDHIAVSLAGLTIPRLDGVV--SR 387 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDA 480 + S P + DL+ C C +Q RL + Sbjct: 388 ATERAAMSVP------HASDYHDLS-----------CWQAAPGCESQFRARLVWLSGKKG 430 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 + G+G D +S I D TL ++ NI G + S L D Sbjct: 431 LALPGVGPGTWDKLIESG----HISGLLDWMTLNH------AELANIPGLAERSSAKLLD 480 Query: 541 SINKRRNISLERFIFSLGIRHVG 563 S+ R + ++ ++G+ G Sbjct: 481 SLQTARERPFQTWLKAIGLPPAG 503 >gi|330980117|gb|EGH78327.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 561 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 128/574 (22%), Positives = 233/574 (40%), Gaps = 126/574 (21%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYD------ALKRRCDAIAHAFPDLARSE 69 +A E+++L+Q+I+ DD Y++ I D YD +L R C LA S Sbjct: 32 KAHSEVTALQQQIAAWDDSYHRQGISQIPDELYDQARQKLSLWRSC---------LAVSS 82 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + PL G + H +P + K+ + ++ ++ K N ++ Sbjct: 83 PESNPLKTAVGPL-------PHPVPHTGVNKLADEGSVKDWL---------KGRNDLW-- 124 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ YEKG+ V A RGDG G+D ++ R I TIP+ L +++ G Sbjct: 125 IQPKVDGVAVTLVYEKGQLVQAISRGDGRKGQDWTSQARLIETIPQQLPQAESPVLQ--G 182 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTS 247 E+Y +D + + N R+ +G+L R ++P + FV Sbjct: 183 ELYWRLDDHIQSASGSV--------NARSKVAGLLARQTISPQQ-ADAIGLFVWD----- 228 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS-----------IRSTLP 296 + G +M Q++ L QA F +Y + +++ R+ LP Sbjct: 229 --WPNGPADMAQRLAGL---------QAMGFEDSAAYTHPLQNYAQAARWREHWYRNPLP 277 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 + DG++ + + ++ +A +P W+ + K QA + ++ +IGR+G +TPV Sbjct: 278 FATDGVIMRQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVL 335 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVD 415 L PV + +D ++G + R DIR GD+V V AG IP++ Sbjct: 336 ELTPVRL------------DDRTVSRISTGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDG 383 Query: 416 IIVNERHPDAQPFSFPSFCPICQSRVVRDLN---PKTGKL--VAAHRCTGGLACSAQQLE 470 ++ SR + P+ ++ + T G C +Q Sbjct: 384 VV---------------------SRAAERADMIIPRADDFHELSCWQATPG--CESQFRA 420 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGF 530 RL + + G+G + ++ I L + ++ NI GF Sbjct: 421 RLAWLSGKKGLALPGVGPGTWNTLIEN----------GQIIGLLDWMTLNHAELVNIPGF 470 Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 + S L DS+ R + ++ ++G+ G Sbjct: 471 AERSSAKLLDSLQTARERPFQTWLKAIGLPPTGG 504 >gi|311277433|ref|YP_003939664.1| DNA ligase (NAD(+)) [Enterobacter cloacae SCF1] gi|308746628|gb|ADO46380.1| DNA ligase (NAD(+)) [Enterobacter cloacae SCF1] Length = 556 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 140/622 (22%), Positives = 252/622 (40%), Gaps = 113/622 (18%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A +E+++L +++ + Y++ + D YD L R F +E+ Sbjct: 27 KAEQEMAALNAQLTRWSEAYWREGASAVSDEVYDQLSARLKQWQRCFSQERTAEE----A 82 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 IGG V H + + K+ + L +++ W ++PK+D Sbjct: 83 PAIGG-------AVKHPVAHTGVRKMASKAALEQWMRTRQGLW-----------VQPKVD 124 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ Y +G+ V A RGDG GED +A R I IP+ + + ++GE++ + Sbjct: 125 GVAVTLVYRQGRLVRAISRGDGLKGEDWTAKARVIAAIPQQTQGPLANSV-LQGEIFWRQ 183 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 ++ + M + N R A+G + R + D +L F+ + G Sbjct: 184 DNH--IQQRMGGM------NARAKAAGAMMRQSDGDALAHLGLFIWE-------WPDGPQ 228 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST-----LPYDIDGLVYKVDEFS 310 M +++ L G R + V+ +++ R+ LP+ DG++ + + Sbjct: 229 TMPERLAAL---AAAGFRLTADWTLPVNTIGDVEQRRAAWFSAPLPFATDGIIIR----A 281 Query: 311 LQKQLGERARSPR--WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 Q+ GER W+++ K+A ++ I +GRTG + +A LEPV + + Sbjct: 282 AQEPAGERWLPGEGGWVVAWKYAPASQVAQVKTIRFAVGRTGKVAVIAALEPVVLDDKRV 341 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +L + + L DI GD++LV AG+ IP+V ++ R D Q Sbjct: 342 QRVSLGSVARWRAL-----------DIAPGDQILVSLAGQGIPRVDGVVW--RGVDRQKP 388 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 S P P+ L + C AQ + RL SR A +IEG+G Sbjct: 389 SPPV--------------PRYNALTCLYASP---ECMAQFIARLVWLSSRQALDIEGVGN 431 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +++ F +F+ Q + +++ G L+ N R Sbjct: 432 AGWQILYQAHH--FE-----HLFSW---LQLTPAQLQATPGLSPARGLTLWHRFNLAREQ 481 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYY--LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 R+I ++ GA +A++ K S+Q Q + DW +L P +G+ Sbjct: 482 PFIRWIVAM-----GAPLAQAALKAAGDRSWQAMRQ-------RSEADWRTL---PGMGE 526 Query: 607 IIAQAIVEFYQNPRNICAVEAL 628 A+ IV + +P+ VEAL Sbjct: 527 EKARQIVSWLHHPQ----VEAL 544 >gi|331014918|gb|EGH94974.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 561 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 128/560 (22%), Positives = 227/560 (40%), Gaps = 92/560 (16%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +A E+++L+Q+I+ DD Y++ I D YD +++ + F A S Sbjct: 28 WSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCF---AVSTPQ 84 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 PL G + H +P + K+ + +D++ ++ W ++ Sbjct: 85 ANPLKTATGPL-------AHPVPHTGVNKLADEKDVKAWLKGRTDLW-----------IQ 126 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG +T+ Y +G+ A RGDG G+D + R I IP+ L P+ + ++GE+ Sbjct: 127 PKVDGVAVTLVYHEGRLAQAISRGDGTQGQDWTPQARLIKAIPQ--QLPQPDSLILQGEL 184 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEI 249 Y D + + N R+ +G+L R ++P + FV Sbjct: 185 YWRLTDHVQAASGSV--------NARSKVAGMLARQTISPQQ-ADAIGLFVWD------- 228 Query: 250 FAKGQYEMLQK---MRCLGFPVNNGVRQANTF--HGIVSYYNEMKSIRSTLPYDIDGLVY 304 + G +M Q+ ++ LGF N+ V + H + + E R+ LP+ DG++ Sbjct: 229 WPDGPADMAQRLAGLQALGF--NHSVAYTHPLENHAQAADWRE-HWYRNPLPFATDGVIM 285 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + ++ +A +P W+ + K QA + + IGRTG + PV L PV + Sbjct: 286 RQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRTGKIAPVLELTPVRL- 342 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 +D ++G + R + DIR GD + V AG IP++ ++ R Sbjct: 343 -----------DDRTVSRISAGSLSRWEKLDIRPGDHIAVSLAGLTIPRLDGVV--SRAA 389 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + S P D + +L G C +Q RL + + Sbjct: 390 ERAEMSVPH---------ASDYH----ELSCWQAAPG---CESQFRARLVWLSGKKGLAL 433 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 G+G D +S I D TL ++ NI G + S L DS+ Sbjct: 434 PGVGPGTWDKLIESG----HISGLLDWMTLNH------AELANIPGLAERSSDKLLDSLQ 483 Query: 544 KRRNISLERFIFSLGIRHVG 563 R + ++ ++G+ G Sbjct: 484 TARERPFQTWLKAIGLPPAG 503 >gi|260599943|ref|YP_003212514.1| NAD-dependent DNA ligase LigB [Cronobacter turicensis z3032] gi|260219120|emb|CBA34475.1| DNA ligase B [Cronobacter turicensis z3032] Length = 550 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 131/625 (20%), Positives = 252/625 (40%), Gaps = 107/625 (17%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 EQAR+E+++LE +++ D+ Y+ + + D+ YD +++R + F S P Sbjct: 16 EQARQEVAALESQLARWDEAYWLRGENNVSDAVYDGMRQRLNVWKTCFSLATVSAAPP-- 73 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++ + H + ++K+ + L +++ W ++PK+ Sbjct: 74 --------PVAAGRTHHPVAHTGVQKLKDAASLSQWMHGKTDLW-----------VQPKV 114 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++ Y KG+ RGDG GED +A R IP IP + + + + ++GE+++ Sbjct: 115 DGVAVSLVYRKGELRQVISRGDGLQGEDWTARARHIPAIPLQVKGELADSV-LQGELFLR 173 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 + D I N R +G + R + + L+ F+ + G Sbjct: 174 REGHHQQQDGGI--------NARAQVAGAMMRNTASPLLNDLDLFIWA-------WPDGP 218 Query: 255 YEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 EM ++ L GFP+ Q + V+ + + + R LP+ DG+V + Sbjct: 219 KEMETRLTILAQGGFPLARAWSQPVSSVADVTRWRK-QWFREPLPFVTDGVVIREAREPP 277 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 K R W+ + K+ + T + + +GRTG ++ VA+LEP+ + ++ Sbjct: 278 GKSW--RPGEGSWVAAWKYPPVKQVTEVNALRFAVGRTGKISVVAQLEPITLDDKQVSKV 335 Query: 372 TLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ++ G + R + D+ GD V V AG+ IP++ D +V ++P Sbjct: 336 SI------------GSLTRWEKLDLAEGDEVEVSLAGQGIPRL-DAVVWRPAKRSKP--- 379 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK-- 488 P + A AC Q + RL + F++ G+G+ Sbjct: 380 ---------------APPAARFDALSCLFATGACEEQFISRLVWLSGKPVFDLAGMGEAT 424 Query: 489 -QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 +QL + E +F+ S ++ GF T L+ N R Sbjct: 425 WRQLSSRHRFEH----------LFSWL---ALSVDALKQTPGFSAPRATRLWHQFNLTRQ 471 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI-NNIIAHNNDDWLSLIRVPLVGD 606 + +R++ +LG L ++Q A + + + + W +L P VG Sbjct: 472 LPFQRWVKALG-----------LPLPARAWQALADDTWHQLQMRDERSWQTL---PGVGA 517 Query: 607 IIAQAIVEFYQNPRNICAVEALLKE 631 A+ +V + +P ++ A+ L E Sbjct: 518 ERARQLVNYIHHP-DVAALAQWLVE 541 >gi|330967268|gb|EGH67528.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 560 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 128/569 (22%), Positives = 229/569 (40%), Gaps = 111/569 (19%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +A E+++L+Q+I+ DD Y++ I D YD +++ + F A S Sbjct: 28 WSHAKASSEITALQQQIAKWDDSYHRQGLSQIPDELYDQSRQKLNDWRSCF---AVSTPQ 84 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 PL G + H +P + K+ + +D++ ++ W ++ Sbjct: 85 ANPLKTATGPL-------AHPVPHTGVNKLADEKDVKAWLKGRTDLW-----------IQ 126 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG +T+ Y++G+ V A RGDG G+D + + I IP+ L P + ++GE+ Sbjct: 127 PKVDGVAVTLVYDEGRLVQAISRGDGTKGQDWTPQAQLIKAIPQ--QLPQPGSLILQGEL 184 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEI 249 Y D + + N R+ +G+L R ++P + FV Sbjct: 185 YWRLTDHVQAASGSV--------NARSKVAGMLARQSISPQQ-ADAIGLFVWD------- 228 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS-----------IRSTLPYD 298 + G +M Q++ L QA F+ V+Y + +++ R+ LP+ Sbjct: 229 WPDGPADMAQRLAGL---------QALGFNDSVAYTHPLENQAQAADWREHWYRNPLPFA 279 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 DG++ + + ++ +A +P W+ + K QA + + IGR+G +TPV L Sbjct: 280 TDGVIMRQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVHFNIGRSGKITPVLEL 337 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417 PV + +D ++G + R + DIR GD + V AG IP++ ++ Sbjct: 338 TPVRL------------DDRTVSRISAGSLPRWEKLDIRPGDHIAVSLAGLTIPRLDGVV 385 Query: 418 --VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKH 474 ER + P S DL+ C C +Q RL Sbjct: 386 SRATERAAMSVPHS-----------DYHDLS-----------CWQAAPGCESQFRARLVW 423 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 + + G+G D +S I D TL ++ NI G + S Sbjct: 424 LSGKKGLALPGVGPGTWDKLIESG----HISGLLDWMTLNH------AELANIPGLAERS 473 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVG 563 L DS+ R + ++ ++G+ G Sbjct: 474 SAKLLDSLQTARERPFQTWLKAIGLPPAG 502 >gi|325271326|ref|ZP_08137858.1| NAD-dependent DNA ligase LigB [Pseudomonas sp. TJI-51] gi|324103542|gb|EGC00857.1| NAD-dependent DNA ligase LigB [Pseudomonas sp. TJI-51] Length = 562 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 136/631 (21%), Positives = 251/631 (39%), Gaps = 113/631 (17%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +Q E++ L + + DD Y++ ++ D YD ++R + F LA P Sbjct: 29 QQVASEVAQLRKTLGSWDDHYHRQGIALVPDELYDQSRQRLAQLQQCF-GLAGGP---AP 84 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 L GG V H IP ++K+ + +++++ W ++PK+ Sbjct: 85 LANAGG-------PVPHPIPHTGIDKLHDRHAVQRWLAGKADVW-----------VQPKV 126 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++ Y +G+ V RG+G G D S I + +I R L + ++++GE+Y+ Sbjct: 127 DGVAVSLIYREGRLVQLISRGNGAQGHDWSRHIPQLGSITRQLPQAMD--LQLQGELYLR 184 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGIL-RRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 N + + A G A R+ +G+L R+ ++ + FV + E Sbjct: 185 LNAHV----QAQAGG----AKARDTVAGLLARKRLSSEQGEAVGLFVWDWPQGPEQ---- 232 Query: 254 QYEMLQKMRCLGFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 Q E L ++ LGF + A NT + + LP+ DG+V + Sbjct: 233 QAERLAQLAQLGFADSQRYSVAINTLDEAAQWREHW--YHAALPFASDGVVLRQGSRPPA 290 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++ +A++P W+ + K+ QA + D+ ++GRTG +TPV L PV + +T + Sbjct: 291 ERW--QAKAPYWLAAWKYPYMQALAEVRDVRFRVGRTGRVTPVLHLLPVTLDNRRVTQVS 348 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQPFSF 430 + + L DIR GD+V V AG IP++ ++ ER P A P Sbjct: 349 MGSLARWHSL-----------DIRPGDQVAVSLAGLTIPRLEQVVHRAVERVPVAAP--- 394 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 AH C + C Q + RL + + Sbjct: 395 ------------------AADQYHAHSCWQASVGCEEQFIARLAWLSGKHGLAL------ 430 Query: 490 QLDFFFKSEDPAFSIRIPADIFT-LQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 ++ + + A + T L Q T++ + G + + L S N R Sbjct: 431 -----LRTGPGTWRRLVAAGLATSLTDWLQLDATRLSEVAGISERTAAQLRSSFNDARTR 485 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 S +++ +R +GA + + + + A D W +L P +G+ Sbjct: 486 SFDQW-----LRGLGAPLPNGM--------QITGDWQALAARTADTWQAL---PGIGEKR 529 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639 A+ +V+F+ A ++ ++ +G H Sbjct: 530 ARQLVDFF--------AAAEVRAIATQLGEH 552 >gi|308188670|ref|YP_003932801.1| DNA ligase [Pantoea vagans C9-1] gi|308059180|gb|ADO11352.1| DNA ligase [Pantoea vagans C9-1] Length = 583 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 137/631 (21%), Positives = 252/631 (39%), Gaps = 111/631 (17%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A +E+ L+Q++ + DD YY+ + + D++YDAL++R H F + P P Sbjct: 32 RATEEIRRLQQQLQHWDDAYYRQGQSPVADADYDALQQRLIQWQHCFSPYQPAYAPQLPG 91 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 N SL V H+ ++ +R + Y ++D ++PK+D Sbjct: 92 N------GTSLHPVAHT----------GVKKMRDKLALAYWMQGRRD-----LWVQPKVD 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++ Y +G+ V RGDG GE+ A IP IP + + E++ ++GE+++ Sbjct: 131 GIAVSLVYRQGRLVSLLSRGDGLRGEEWLAKAAWIPAIPLNIETRLDEVV-LQGELFLPM 189 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 D + + I G+ N R +G + + L+ F+ + G Sbjct: 190 TD----HQQAIDGGK----NARTQVAGAMMSKQRVPLLNSLDVFIWA-------WPDGPA 234 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEFS 310 M +++ L G+ A + V E+ + R + LP+ DG+V Sbjct: 235 TMTERLEQLS---RWGLGIAAKWSHSVKDEEEVAAWRDRWFHAALPFVTDGVVVHQSLRP 291 Query: 311 LQKQL--GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 K GE W ++ K+ + S +L +D +GRTG + V L+PV + Sbjct: 292 AGKNWLPGEGT----WAVAWKYQPPEVSAEVLSVDFPVGRTGKIAAVLNLQPVQL----- 342 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNER-HPDA 425 ++ ++ ++ DI GD + + AG+ IP++ +I V ER +P Sbjct: 343 ------DDKTVRRVNVGSLRRWQESDIVAGDVITLSLAGQGIPRLERVIWRVAERDYP-- 394 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIE 484 QP + P+ C T C Q L +L+ + NI Sbjct: 395 QPPDASHYTPLS--------------------CYTFSAECQKQLLAKLRWLSQKTVLNIP 434 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+ + ++ S+ TL Q + T GF + L+ N Sbjct: 435 GVERSTWLRLLETG----SMTHLFGWLTLTPEQIAAAT------GFSPERASQLWHRFNL 484 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R R++ +LGI + + +SL Q+ +++ + W +L P V Sbjct: 485 TRQQPFRRWVDALGI-SLPRKALKSLPD---------QQWESLMQRDVTGWQAL---PGV 531 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 G +A+ +V + + R + L ++ PS Sbjct: 532 GAALAKRLVAQFHDARVQALIAFLQQQGIPS 562 >gi|66048020|ref|YP_237861.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae B728a] gi|81307820|sp|Q4ZLZ9|LIGB_PSEU2 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|63258727|gb|AAY39823.1| DNA ligase (NAD+) [Pseudomonas syringae pv. syringae B728a] Length = 561 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 119/567 (20%), Positives = 229/567 (40%), Gaps = 112/567 (19%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR E+++L+Q+I+ DD Y++ I D YD +++ + F DP Sbjct: 32 KARSEVTALQQQIAEWDDSYHRQGISQIADELYDQARQKLNLWRSCFAVSTPESDP---- 87 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 + ++ + H +P + K+ + ++ ++ K N ++ ++PK+D Sbjct: 88 ------LKTAVGPLPHPVPHTGVNKLADEGSVKGWL---------KGRNDLW--IQPKVD 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ YEKG+ V A RGDG G+D ++ R I I + L I++ GE+Y Sbjct: 131 GVAVTLVYEKGRLVQAISRGDGRKGQDWTSQARLIKAIAQQLPQAESTILQ--GELYWRL 188 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKG 253 +D + + N R+ +G+L R ++P + FV + G Sbjct: 189 DDHIQAASGSV--------NARSKVAGLLARQTISPQQ-ADAIGLFVWD-------WPNG 232 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKS-----------IRSTLPYDIDGL 302 +M Q++ L QA F +Y + +++ R+ LP+ DG+ Sbjct: 233 PADMAQRLAGL---------QAMGFEDSAAYTHPLENYVQAARWREHWYRNPLPFATDGV 283 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 + + + ++ +A +P W+ + K QA + ++ +IGR+G +TPV L PV Sbjct: 284 ILRQGQRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVR 341 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 + ++ + + + L DIR GD++ V AG IP++ ++ Sbjct: 342 LDDRTVSRISTGSLQRWQTL-----------DIRPGDQIAVSLAGLTIPRLDGVV----- 385 Query: 423 PDAQPFSFPSFCPICQSRVVRDLN---PKTGKL--VAAHRCTGGLACSAQQLERLKHFVS 477 SR + P+ ++ + T G C +Q RL Sbjct: 386 ----------------SRAAERADMIIPRADDFHELSCWQATPG--CESQFRARLAWLSG 427 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 + + G+G + + I L + ++ NI GF + S Sbjct: 428 KKGLALPGVGPGTWNTLIDN----------GQIMGLLDWMTLNHAELVNIPGFAERSSAK 477 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGA 564 L DS+ R + ++ ++G+ G Sbjct: 478 LLDSLQTARERPFQTWLKAIGLPPTGG 504 >gi|156936180|ref|YP_001440096.1| NAD-dependent DNA ligase LigB [Cronobacter sakazakii ATCC BAA-894] gi|166226363|sp|A7MQB5|LIGB_ENTS8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|156534434|gb|ABU79260.1| hypothetical protein ESA_04079 [Cronobacter sakazakii ATCC BAA-894] Length = 561 Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 115/554 (20%), Positives = 228/554 (41%), Gaps = 95/554 (17%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 +QA++E+++LE +++ D+ Y+ + + + D+ YD++++R A F ++ P Sbjct: 27 QQAQQEVAALENQLTRWDEAYWLHGENKVSDAVYDSMRQRLRAWQTCFALPVFNDAP--- 83 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 + L+ + H + ++K+ + L +++ W ++PK+ Sbjct: 84 -------VALAAGRTRHPVAHTGVQKLNDATSLSQWMHGKTDLW-----------VQPKV 125 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +++ Y KGK RGDG GED +A R IP IP ++ + + + ++GE+++ Sbjct: 126 DGVAVSLVYRKGKLQQVISRGDGERGEDWTARARHIPAIPLQVTGELADSV-LQGELFLR 184 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 + D I N R +G + R + + L+ F+ + G Sbjct: 185 QTGHRQQQDGGI--------NARGQVAGAMMRSTVSSVLNDLDLFIWA-------WPDGP 229 Query: 255 YEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKV 306 M ++ L GFP+ A + V +++ +R LP+ DG+V + Sbjct: 230 KAMEARLSTLAEGGFPL------AQAWSKPVHSVSDVARLREQWFSEPLPFVTDGVVIRE 283 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 K R W+++ K+ + T + + +GRTG ++ VA+LEPV + Sbjct: 284 GREPPGKSW--RPGEGSWVVAWKYPPAKQITEIKALRFAVGRTGKISVVAQLEPVTLDDK 341 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ ++ G + R + D+ GD+V + AG+ IP++ +I Sbjct: 342 KVSKVSI------------GSLARWEKLDLAEGDQVEISLAGQGIPRLDAVI-------- 381 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + P + + V P T + G C Q + RL + F++ G Sbjct: 382 -------WRPTQRIKPV----PPTARFDTLSCLYGTTGCEEQFISRLVWLSGKHVFDLAG 430 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G+ SE F +F+ S ++ GF L+ N Sbjct: 431 MGEATWRQL--SEHHHFE-----HLFSW---LALSVDALKQTPGFSAQRAAQLWHQFNLT 480 Query: 546 RNISLERFIFSLGI 559 R +R++ +LG+ Sbjct: 481 RQQPFQRWVKALGL 494 >gi|320326326|gb|EFW82379.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea str. B076] Length = 561 Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 120/557 (21%), Positives = 227/557 (40%), Gaps = 92/557 (16%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR E+++L+Q+++ +D Y++ I D YD +++ + F DP Sbjct: 32 KARSEVTNLQQQMAAWNDSYHRQGISHIPDELYDQARQKLNLWRSCFAVPPPEADP---- 87 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 + ++ + H + + K+ + ++ ++ W ++PK+D Sbjct: 88 ------LKTAVGPLPHPVAHTGVNKLADESSVKDWLEGRNDLW-----------IQPKVD 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ YE G+ V A RGDG G+D ++ R I TIP+ L PE ++GE+Y Sbjct: 131 GVAVTLVYENGQLVQAISRGDGRKGQDWTSQARLIKTIPQ--HLPQPESAILQGELYWRL 188 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTD---ITRYLNFFVHGLGKTSEIF 250 +D + + N R+ +G+L R ++P I ++ + +G G ++ Sbjct: 189 DDHIQSASGSV--------NARSKVAGLLARQTISPQQADAIGLFVWDWPNGPGDMAQRL 240 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A Q + P+ N + A +Y R+ LP+ DG++ + + Sbjct: 241 AGLQAMGFEDSAAYSHPLENYAKAARWRE---HWY------RNPLPFATDGVIMRQGQRP 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ +A +P W+ + K QA + + +GR+G +TPV L PV + Sbjct: 292 PMQRW--QASAPYWIAAWKHPYAQALAEVRKVSFNVGRSGRITPVLELTPVRL------- 342 Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 +D ++G + R DIR GD+V V AG IP++ +I Sbjct: 343 -----DDRTVSRISTGSLQRWQTLDIRPGDQVAVSLAGLTIPRLDGVISRA--------- 388 Query: 430 FPSFCPICQSRVVRDLNPKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 + V + P+ ++ + T G C +Q RL + + G+G Sbjct: 389 ---------AERVEMIIPQADDFHELSCWQATPG--CESQFRARLIWLSGKKGLALPGVG 437 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 D ++ I D TL ++ NI GF + S L S+ R Sbjct: 438 PGTWDKLIENGQ----IESLLDWMTLNH------AELANIPGFAERSSAKLLASLQTARE 487 Query: 548 ISLERFIFSLGIRHVGA 564 + ++ ++G+ G+ Sbjct: 488 RPFQTWLKAIGLPPTGS 504 >gi|293413081|ref|ZP_06655749.1| DNA ligase [Escherichia coli B354] gi|291468728|gb|EFF11221.1| DNA ligase [Escherichia coli B354] Length = 561 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 131/593 (22%), Positives = 235/593 (39%), Gaps = 111/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHRDA 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129 PLN + V H+ +RK +I W ++ + Sbjct: 84 MMPPLN------GAVIHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++G Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L+ FV ++ Sbjct: 181 EIFLKREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLDVFVWAWPDGPQL 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 233 MT----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKAKLPFVTDGVVV 282 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPV 337 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 385 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 423 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + F ++G+G+ ++ + FS F L Q ++N G Sbjct: 424 KQVFGLDGIGEAGWRALHQTHRFEHIFS------WFLLTPEQ------LQNTPGIAKSKS 471 Query: 536 TNLYDSINKRRNISLERFIFSLGIR----HVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ LS + F Q++ Sbjct: 472 AQLWHQFNLARKQPFTRWVMAMGIPLTRVALNASDERSWSQLLLSTEQFWQQL 524 >gi|323975134|gb|EGB70239.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli TW10509] Length = 560 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 127/588 (21%), Positives = 238/588 (40%), Gaps = 102/588 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ + I D YD L R F + +R Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNESR--- 80 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + + + G V H + + K+ + LR ++ ++ N ++ + Sbjct: 81 -DAMMPPLAG-------TVMHPVAHTGVRKLADKNALRLWM---------REHNDLW--V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + IP++P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLIPSVPQTVSGPLVNST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R+ +G+L R +D L FV +++ Sbjct: 181 IFLKREGH--IQQQMGGI------NARSKVAGLLMRQGNSDTLNSLGVFVWAWPDGTQLM 232 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 + LQ++ GF + R N + NE ++ LP+ DG+V + Sbjct: 233 T----DRLQQLTTAGFTLTQMYTRAVNNADEVERIRNEW--WKAKLPFVTDGVVVRA--- 283 Query: 310 SLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 K+ R P W+++ K+ + I +G++G ++ VA L PV + Sbjct: 284 --AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDK 341 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIV--NERHP 423 + + G V R DI GD++LV AG+ IP++ +++ ER Sbjct: 342 KVQRVNV------------GSVRRWQEWDIAPGDKILVSLAGQGIPRIDNVVWRGTERTK 389 Query: 424 DAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P + F S S V C Q + RL S+ Sbjct: 390 PTPPENRFNSLTCYFASDV----------------------CREQFISRLVWLGSKQVLG 427 Query: 483 IEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 ++G+G+ ++ + FS + + +++N G T L+ Sbjct: 428 LDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSTQLWH 475 Query: 541 SINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 476 QFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|330972946|gb|EGH73012.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 561 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 117/559 (20%), Positives = 227/559 (40%), Gaps = 96/559 (17%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +AR E ++L+Q+I+ DD Y++ I D YD +++ + F DP Sbjct: 32 KARSEATALQQQIAEWDDSYHRQGISQIADELYDQARQKLNLWRSCFAVSIPESDP---- 87 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 + ++ + H +P + K+ + ++ ++ K N ++ ++PK+D Sbjct: 88 ------LKTAVGPLPHPVPHTGVNKLADEGSVKDWL---------KGRNDLW--IQPKVD 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ YEKG+ V A RGDG G+D ++ R I I + L I++ GE+Y Sbjct: 131 GVAVTLVYEKGRLVQAISRGDGRKGQDWTSQARLIKAIAQQLPQAESTILQ--GELYWRL 188 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKG 253 +D + + N R+ +G+L R ++P + FV + G Sbjct: 189 DDHIQAASGSV--------NARSKVAGLLARQTISPQQAD-AIGLFVWD-------WPNG 232 Query: 254 QYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +M Q+ ++ +GF + + + + E R+ LP+ DG++ + + Sbjct: 233 PADMAQRLAGLQAMGFEDSAAYTHPLENYAQAARWRE-HWYRNPLPFATDGVIMRQGQRP 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 ++ +A +P W+ + K QA + ++ +IGR+G +TPV L PV + ++ Sbjct: 292 PAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRTVSR 349 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 + + + L DIR GD++ V AG IP++ ++ Sbjct: 350 ISTGSLQRWQTL-----------DIRPGDQIAVSLAGLTIPRLDGVV------------- 385 Query: 431 PSFCPICQSRVVRDLN---PKTGKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 SR + P+ ++ + T G C +Q RL + + G Sbjct: 386 --------SRTAERADMIIPRADDFHELSCWQATPG--CESQFRARLAWLSGKKGLALPG 435 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 +G + + I L + ++ NI GF + S L DS+ Sbjct: 436 VGPGTWNTLIDN----------GQIMGLLDWMTLNHAELVNIPGFAERSSAKLLDSLQTA 485 Query: 546 RNISLERFIFSLGIRHVGA 564 R + ++ ++G+ G Sbjct: 486 RERPFQTWLKAIGLPPTGG 504 >gi|323965913|gb|EGB61361.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli M863] Length = 562 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 127/592 (21%), Positives = 241/592 (40%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ + I D YD L R F + +R Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNESR--- 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + + + G V H + + K+ + LR ++ ++ N ++ + Sbjct: 83 -DAMMPPLAG-------TVMHPVAHTGVRKLADKNALRLWM---------REHNDLW--V 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + IP++P+ +S + ++GE Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLIPSVPQTVSGPLVNST-LQGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R+ +G+L R +D L FV +++ Sbjct: 183 IFLKREGH--IQQQMGGI------NARSKVAGLLMRQGNSDTLNSLGVFVWAWPDGTQLM 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 + LQ++ GF + T+ V+ +E++ IR + LP+ DG+V + Sbjct: 235 T----DRLQQLTTAGFTLT------QTYTRAVNNADEVERIRNEWWKAKLPFVTDGVVVR 284 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 285 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVM 339 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIV--N 419 + + + G V R DI GD++LV AG+ IP++ +++ Sbjct: 340 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDNVVWRGT 387 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 388 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 425 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 426 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 473 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 474 QLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|332141273|ref|YP_004427011.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551295|gb|AEA98013.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Deep ecotype'] Length = 171 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 95/162 (58%), Gaps = 5/162 (3%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++EQARK+++ L ++ ++ YY P I D+ YD + A+ +P L + PN Sbjct: 4 TLEQARKKVAELRNTLNEYNYQYYVLDDPSIPDAVYDRDMQSLIALEKQYPSL---QSPN 60 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P K+GGE + +VTH +P LSL+ ++ E L F R+ + KD +S+ F+ EP Sbjct: 61 SPSQKVGGEALSAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKD--RLKDTSSLHFSCEP 118 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 K+DG ++I YE G+ V AA RGDG GE+++A +R I +P Sbjct: 119 KLDGLAVSILYENGELVRAATRGDGQVGENITANVRTISNVP 160 >gi|330955026|gb|EGH55286.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae Cit 7] Length = 561 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 119/565 (21%), Positives = 229/565 (40%), Gaps = 100/565 (17%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +AR E+++L+Q+++ DD Y++ I D YD +++ F DP Sbjct: 28 WSAAKARSEVTNLQQQMAAWDDSYHRQGISPIPDELYDQARQKLSLWRSCFAVSTPEADP 87 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + ++ + H + + K+ + ++ ++ K N ++ ++ Sbjct: 88 ----------LKTAVGPLPHPVAHTGVNKLADESSVKDWL---------KGRNDLW--IQ 126 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG +T+ YE G+ V A RGDG G+D ++ R I IP+ L I++ GE+ Sbjct: 127 PKVDGVAVTLVYENGQLVQAISRGDGRKGQDWTSQARLIKAIPQQLPQADSAILQ--GEL 184 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNPTD---ITRYLNFFVHGLGKT 246 Y +D + + N R+ +G+L R ++P I ++ + +G G Sbjct: 185 YWRLDDHIQSASGSV--------NARSKVAGLLARQTISPQQADAIGLFVWDWPNGPGDM 236 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 ++ A Q + P+ N + A +Y R+ LP+ DG++ + Sbjct: 237 AQRLAGLQAMGFEDSAAYSHPLENYAKAARWRE---HWY------RNPLPFATDGVIMRQ 287 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + ++ +A +P W+ + K QA + ++ +IGR+G +TPV L PV + Sbjct: 288 GQRPPAQRW--QASAPYWIAAWKHPYAQALAEVCKVNFKIGRSGRITPVLELTPVRL--- 342 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERH- 422 +D ++G + R DIR G ++ V AG IP++ ++ ER Sbjct: 343 ---------DDRTVSRISTGSLQRWQTLDIRPGAQIAVSLAGLTIPRLDGVVTRAAERAD 393 Query: 423 ---PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 P A+ F ++ + T G C +Q RL + Sbjct: 394 IIIPRAEDF----------------------HELSCWQATPG--CESQFRARLAWLSGKK 429 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 + G+G + ++ I L + ++ NI GF + S L Sbjct: 430 GLALPGVGPGTWNTLIEN----------GQIMGLLDWMTLNHAELANIPGFAERSSAKLL 479 Query: 540 DSINKRRNISLERFIFSLGIRHVGA 564 +S+ R + ++ ++G+ G Sbjct: 480 NSLQTARERPFQTWLKAIGLPPTGG 504 >gi|307128799|ref|YP_003880815.1| DNA ligase [Dickeya dadantii 3937] gi|306526328|gb|ADM96258.1| DNA ligase [Dickeya dadantii 3937] Length = 561 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 103/416 (24%), Positives = 183/416 (43%), Gaps = 66/416 (15%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A +E++ L Q+++ D+ YY+ + + D YD L++ F Sbjct: 26 AWSSTRAEQEITQLGQQLTQWDNAYYEQGQSPVDDQVYDQLRQTLATWQVCF-------- 77 Query: 71 PNGPLNKIGGEMNLSL---FKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 G +SL + H + L+K+ +L+++I + W Sbjct: 78 -----QADAGRFAISLPTTGRRQHPVAHTGLKKLSEPTELKQWIAQHNDLW--------- 123 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PKIDG +T+ YE+GK V A RG+G GED + +R + ++P+ LS + Sbjct: 124 --VQPKIDGVAVTLVYEQGKLVAAISRGNGRQGEDWTDKVRQMNSVPQQLSAMSGRQV-F 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 +GE+Y+ D I N R +G +RR P+ + + FV Sbjct: 181 QGELYLQVTDHRQQQVGGI--------NARAQVAGEMRRKQPSPLLSRIGVFVWA----- 227 Query: 248 EIFAKGQYEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + G +M L K+R LGF + Q + + + E + R+ LP+ DG+V Sbjct: 228 --WPDGPADMPARLAKLRELGFGLTADYTQPVSSLEAAAQWRE-RWYRAPLPFVTDGVVV 284 Query: 305 KVDEFSLQKQLGERAR-SP-RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 + Q+ G + +P W ++ K+ T + +D+++GRTG +T V +L+PV Sbjct: 285 R----QAQEPAGRYWQDTPAEWAVAWKYPLVNRVTEVTGVDVEVGRTGRMTVVLQLQPVI 340 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417 + ++ L G V R + D+ GDRV + AG IP++ ++ Sbjct: 341 LDDKTVSRVNL------------GSVSRWRQWDVLPGDRVSISLAGLGIPRLDAVV 384 >gi|152972501|ref|YP_001337647.1| NAD-dependent DNA ligase LigB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166226364|sp|A6TFP6|LIGB_KLEP7 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|150957350|gb|ABR79380.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 564 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 130/635 (20%), Positives = 253/635 (39%), Gaps = 114/635 (17%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + R+E S L Q+I + Y++ + D YD L R FP +D Sbjct: 32 LARGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPEDD--- 88 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 ++ H + + K+ + + + +++ W ++PK Sbjct: 89 -------DLPPPTGDARHPVAHTGVRKLADEDSVARWMKNKSDLW-----------IQPK 130 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG +T+ Y +G+ V A RGDG GE +A R IP + +V++ + + + ++GE+++ Sbjct: 131 VDGVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGELADSV-LQGELFL 189 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKG 253 ++ + + N R +G++ R + L+ F+ + G Sbjct: 190 RRDGHVQQQTGGM--------NARAKVAGLMMRADAAAALSQLDVFIWA-------WPDG 234 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-----KSIRSTLPYDIDGLVYKVDE 308 +M ++ + L G + + + VS ++ + RS LP+ DG++ + Sbjct: 235 PSDMRRRQQLL---AQAGFKYSGQYTHPVSRIEQVAQWRQRWYRSPLPFVSDGVIVREG- 290 Query: 309 FSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 ++ R SP W+ + K+ ++ I IGR+G L VA LEP + Sbjct: 291 ----REPPGRVWSPGKGEWLAAWKYPPASRVMQVRAIRFSIGRSGRLNVVAELEPQRLDD 346 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH- 422 + + + + LD I VGD++ + AG+ IP+V ++ ERH Sbjct: 347 KRVQRVNVGSVSRWQMLD-----------IGVGDQLQISLAGQGIPRVDAVVWRTAERHK 395 Query: 423 PDAQPFSFPSF-CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P P F + C P+ CS Q L RL S+ A Sbjct: 396 PTPPPAKFNALTCYFA--------TPE---------------CSEQFLSRLIWLSSKSAL 432 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 N++G+G + L + ++P IF+ + +++ + G +L+ Sbjct: 433 NVDGVG-ENLWRVIQQQNPM------THIFSW---LALTVEQLQAVPGISAARGQHLWHQ 482 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + R R++ ++GI +A+ L +N+ + + A + W +L Sbjct: 483 FDLVRKRPFIRWVLAMGIPVPQGALAQ------LESENW----HLLAAKSEAQWRTL--- 529 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 P VG+I A+ +V F +P + + L + P Sbjct: 530 PGVGEIRARQLVAFLHHPDVVALAQWLSGQRIPGF 564 >gi|82913524|ref|XP_728678.1| NAD-dependent DNA ligase [Plasmodium yoelii yoelii str. 17XNL] gi|23485151|gb|EAA20243.1| DNA ligase, NAD-dependent, putative [Plasmodium yoelii yoelii] Length = 354 Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 102/187 (54%), Gaps = 11/187 (5%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 R ++ + A +E+ARK L +EI +H+ YY+ P+I D+EYD L AI +P Sbjct: 178 RTVVSVPAEVVEKARK----LREEIEFHNVRYYRLDDPLITDAEYDRLMAELLAIEARYP 233 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 +L P+ P ++G + +V H +P LSLE ++ EDL F R+ + + Sbjct: 234 ELV---TPDSPTQRVGAPPVEAFTEVRHEVPMLSLENAFSEEDLTAFDRRVRKELSR--- 287 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIP 182 +++ + EPK+DG + + Y+ G V AA RGDG GEDV+ +RA+ IP R+ + P Sbjct: 288 DTLEYVAEPKLDGLAVNLLYQDGVLVRAATRGDGEVGEDVTHNVRAVRAIPLRLKGEDFP 347 Query: 183 EIIEVRG 189 + E G Sbjct: 348 DRFEGAG 354 >gi|48374262|gb|AAT41954.1| putative DNA ligase [Fremyella diplosiphon Fd33] Length = 268 Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 145/294 (49%), Gaps = 31/294 (10%) Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 PS CP+C VVR+L A RC +C+A ++H+VSRDA +I+G+G++ Sbjct: 1 MPSNCPVCGQPVVRELGE------AVTRCVNA-SCAAILKGAIEHWVSRDALDIKGMGEK 53 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 + D + AD++ L K+ + G S L D+I + +N Sbjct: 54 ---LVHQLVDKGL-VHSVADLYDLTEE------KLYVLERMGQKSAQKLIDAIAQSKNQP 103 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 R ++ LGIRHVG+ A+ L + + + Q + IA + +G IA Sbjct: 104 WSRVLYGLGIRHVGSVNAQLLTEKFSDVEKITQARQSDIAG----------IYGIGVEIA 153 Query: 610 QAIVEFYQNPRNICAVEAL----LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +++ +++Q N + L L+ + + + + + +K V TGTL ++R + Sbjct: 154 ESVHQWFQIHANQTLISRLQAAGLQLANSAETSTITDSNPQFTDKTFVVTGTLPTLKRDE 213 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+ + + G V+ +S+KTD ++VG++ GSKL KA+ LG+ + E Q L +L+ Sbjct: 214 AKALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLAKAEALGITQLTEAQLLQMLE 267 >gi|295095236|emb|CBK84326.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 556 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 145/641 (22%), Positives = 251/641 (39%), Gaps = 133/641 (20%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +A +E+++L+ +++ +D Y++ + D YD L R F D +D Sbjct: 23 WSPAKAGQEIAALKAQLTRWNDDYWKQGSSEVSDDVYDRLNARLKQWQRCFHDEPLHDD- 81 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 L G V H + K+ + + L +++ W ++ Sbjct: 82 ---LPAASG-------TVKHPFAHTGVHKVESKQALSRWMATQQDLW-----------VQ 120 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG +T+ Y+ GK V A RGDG GE+ +A R IP IP+ L+ + + ++GE+ Sbjct: 121 PKVDGVAVTLVYKNGKLVQAISRGDGLQGEEWTAQARMIPAIPQTLAGPLANSV-LQGEL 179 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 ++ + + R N R +G + R + F+ + Sbjct: 180 FLLREGHIQQ--------RMGGMNARAKVAGAMMRATDRAALKQTGIFIWA-------WP 224 Query: 252 KGQYEMLQKMRCL---GF--------PVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G M ++ L GF PV N A+ +++ +++LP+ D Sbjct: 225 DGPKAMKARLSTLAEAGFTLTARYTVPVKNA---ADVEAQRTAWF------KASLPFATD 275 Query: 301 GLVYKVDEFSLQKQLGER--ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 G+V + + GER W+++ K+ T + I +GRTG +T +A+L Sbjct: 276 GIVVRASA----EPPGERWLPGEGSWVVAWKYLPVAQVTEVKAIHFTVGRTGRITAIAQL 331 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417 EP+ + + +L G V R R DI GD+VLV AG+ IP++ +++ Sbjct: 332 EPLMLDDKRVQRVSL------------GSVNRWQRLDIAPGDQVLVSLAGQGIPRLDNVV 379 Query: 418 ---VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 V+ R P P + + C Q RL Sbjct: 380 WRNVDRRKP----------------------QPPSSRYNGLTCFYASPECMEQFFARLTW 417 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGD 532 SR A +IEG+G+ +++ + FS L + Q T+T I G Sbjct: 418 LSSRQALDIEGVGESGWRTLYQAHRFEHLFS------WLQLTQAQLTATAGISASHG--- 468 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 L+ N R R+I ++GI +ARS K + +I + Sbjct: 469 ---AALWHQFNLARERPFIRWITAMGI-----PLARSTLKAAGD-----RTWQALIQRSE 515 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 +W L P VG A+ IV + P+ ++AL K ++ Sbjct: 516 AEWRML---PGVGQEKARQIVNWLHQPQ----IDALAKWLA 549 >gi|218707281|ref|YP_002414800.1| NAD-dependent DNA ligase LigB [Escherichia coli UMN026] gi|293407270|ref|ZP_06651194.1| DNA ligase B [Escherichia coli FVEC1412] gi|298383016|ref|ZP_06992611.1| DNA ligase [Escherichia coli FVEC1302] gi|226737618|sp|B7NEV1|LIGB_ECOLU RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|218434378|emb|CAR15303.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026] gi|291426081|gb|EFE99115.1| DNA ligase B [Escherichia coli FVEC1412] gi|298276852|gb|EFI18370.1| DNA ligase [Escherichia coli FVEC1302] Length = 560 Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 127/593 (21%), Positives = 236/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + E Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGN----ET 79 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129 P+ + + G + + V H+ +RK +I W ++ + Sbjct: 80 PDVMMPPLNGAV---IHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++G Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 180 EIFLKREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 232 MT----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKAKLPFVTDGVVV 281 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 282 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKTIQFAVGKSGKISVVASLAPV 336 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 337 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 384 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 385 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 422 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 423 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 470 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ LS + F Q++ Sbjct: 471 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 523 >gi|300898582|ref|ZP_07116912.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 198-1] gi|300357745|gb|EFJ73615.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 198-1] Length = 561 Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 127/593 (21%), Positives = 236/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + E Sbjct: 25 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGN----ET 80 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129 P+ + + G + + V H+ +RK +I W ++ + Sbjct: 81 PDVMMPPLNGAV---IHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++G Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 EIFLKREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 233 MT----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKAKLPFVTDGVVV 282 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKTIQFAVGKSGKISVVASLAPV 337 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 385 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 423 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 424 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ LS + F Q++ Sbjct: 472 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 524 >gi|331685309|ref|ZP_08385895.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli H299] gi|331077680|gb|EGI48892.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli H299] Length = 561 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 127/593 (21%), Positives = 233/593 (39%), Gaps = 111/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGIYDQLSARLTQWQRCFGEETHRDA 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129 PLN + V H+ +RK +I W ++ + Sbjct: 84 MMPPLN------GAVIHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++G Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 EIFLKREGH--IQKQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 233 MT----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKTKLPFVTDGVVV 282 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVARVAEVKAIQFAVGKSGKISVVASLAPV 337 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 385 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 423 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 424 KQVLGLDGIGEAGWRSLHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ LS + F Q++ Sbjct: 472 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 524 >gi|331675125|ref|ZP_08375882.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA280] gi|331068034|gb|EGI39432.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA280] Length = 562 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 127/592 (21%), Positives = 233/592 (39%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 85 MMPPLNG----------AVIHPVAHTGVRKMADEIALSLWMRECSDLW-----------V 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 183 IFLKREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 234 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 + L+++ GF + T+ V +E+ +R + LP+ DG++ + Sbjct: 235 T----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAKLPFVTDGVIVR 284 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ KF + I +G++G ++ VA L PV Sbjct: 285 A-----AKEPESRHWLPGQAEWLVAWKFQPVAQVVEVKAIQFAVGKSGKISVVASLAPVM 339 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 340 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 387 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 388 ERAKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 425 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + +T +++N G Sbjct: 426 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTTEQLQNTPGIAKSKSA 473 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 ++ N R R++ ++GI + A RS ++ LS + F Q++ Sbjct: 474 QIWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 525 >gi|317494707|ref|ZP_07953119.1| NAD-dependent DNA ligase adenylation domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917309|gb|EFV38656.1| NAD-dependent DNA ligase adenylation domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 571 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 105/418 (25%), Positives = 177/418 (42%), Gaps = 60/418 (14%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P + E+A E+S+L+Q+++ D+ Y+ + D YD + +R + F L Sbjct: 19 PCPDWAAERATHEISALQQQMAKWDEAYFLQGSSPVSDEIYDQMAQRLKSWKQCF--LTN 76 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 S N L LS H + L K+ N +R ++ K S++ Sbjct: 77 SSSSNSALEPTSPRNTLS-----HPVAHTGLNKLENEAAVRDWL---------KGKESVW 122 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE---I 184 ++PKIDG +T+ Y+ G+ RGDG G+D + +I IP+ IP+ Sbjct: 123 --IQPKIDGVAVTLHYQHGRLKSMISRGDGLIGQDWTKASASISAIPK----KIPDDEAY 176 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR-RLNPTDITRYLNFFVHGL 243 ++GE+++ D D I N R+ +G +R + ++ L F+ G Sbjct: 177 TVLQGELFLKVTDHQQKRDGGI--------NARSKVAGAMRLKFLSSETANQLEIFIWG- 227 Query: 244 GKTSEIFAKGQYEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + G EM L K+ LGFP+ A T V + E + LP+ D Sbjct: 228 ------YPDGPAEMPQRLNKLARLGFPLAEQYTHAVTDVVDVEKWREYW-YQQPLPFVTD 280 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V + + + R P W + K+ K + T + D+ IGR+G + V LEP Sbjct: 281 GIVLHMAQQP--ASVLWRPSPPGWAAAWKYPLKSSVTEVKDVQFSIGRSGRINAVLLLEP 338 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417 V + ++ +L G VMR + D++ D+V V AG+ P + +I Sbjct: 339 VTVDDKRVSRVSL------------GSVMRWQQWDVQPHDQVSVVLAGQGTPHLEKVI 384 >gi|237728943|ref|ZP_04559424.1| NAD-dependent DNA ligase LigB [Citrobacter sp. 30_2] gi|226909565|gb|EEH95483.1| NAD-dependent DNA ligase LigB [Citrobacter sp. 30_2] Length = 559 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 131/632 (20%), Positives = 250/632 (39%), Gaps = 121/632 (19%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +A +E+S L+Q+I+ +D Y++ + + D YD L + F D A P Sbjct: 25 WSPARANEEISRLQQQITQWNDSYWKQGESAVDDGVYDQLNAQLIQWQRCFGDEA---PP 81 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + + I G V+H +P + K+ + + L +++ W ++ Sbjct: 82 DLSVPPISG-------TVSHPVPHTGVRKLADKQALHQWMHARSDLW-----------VQ 123 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG +T+ Y KG V A RG+G GED + + IP++P + ++GE+ Sbjct: 124 PKVDGVAVTLVYRKGNLVRAISRGNGLKGEDWTQKVLQIPSVPHSTKGKLANST-LQGEI 182 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 ++ + + ++ N R+ +G++ R T++ R L F+ + Sbjct: 183 FLQQEGHIQ--------KQRGGMNARSKVAGLMMRQGNTEMLRSLAIFIWAWPDGPAVMP 234 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 E L+++ GF QA V + + S LP+ DG+V + Sbjct: 235 ----ERLEQLTAAGFSYTQRYTQAVKNADDVE-KSRARWWSSALPFVTDGVVVRT----- 284 Query: 312 QKQLGERARSPR----------WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 A+ PR W+ + K+ + + I +G++G + VA L PV Sbjct: 285 -------AKEPRAQYWLPGQGDWLAAWKYPPVTRVSEVTGIQFSVGKSGKIAVVALLTPV 337 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNE 420 + + + G V R DI GD++LV AG+ IP+ +D +V Sbjct: 338 MLDDKRVQRVNI------------GSVRRWNEWDIAPGDQILVSLAGQGIPR-IDEVVWR 384 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 +P P G+ + C Q + RL ++ Sbjct: 385 STQRTKPI------------------PPEGRFNSLTCFYATAECQEQFVARLVWLGGKEV 426 Query: 481 FNIEGLGK---QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 +EG+G+ ++L+ ++ E IF+ Q ++E+ LG + Sbjct: 427 LGLEGIGEAGWRELNQVYRFE----------HIFSWLGLTQ---EQLESALGV--IKGEK 471 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L+ N R++ R++ ++GI A + S S+Q + + W Sbjct: 472 LWHQFNLSRDLPFTRWVIAMGIPLTQATLNASRDG---SWQQLKE-------RDEQSWRQ 521 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALL 629 L P +G+ A+ ++++ ++ R + A+ L Sbjct: 522 L---PFMGERRARQVIQWLED-REVTALSNWL 549 >gi|32396683|gb|AAP49298.1| NAD-dependent DNA ligase [Bacillus coagulans] Length = 121 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 1/118 (0%) Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L+P +R L+ FV+GL E+ + E L ++ LGF VN Sbjct: 1 ANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIESHSEALDYLQALGFKVNPER 60 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 R+ ++++ NE R LPY+IDG+V KVD F+ Q++LG A+SPRW I++KF Sbjct: 61 RRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKSPRWAIAYKF 118 >gi|312967984|ref|ZP_07782195.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli 2362-75] gi|312287243|gb|EFR15152.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli 2362-75] Length = 561 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 126/593 (21%), Positives = 233/593 (39%), Gaps = 111/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHRDA 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129 PLN + V H+ +RK +I W ++ + Sbjct: 84 MMPPLN------GAVIHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++G Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 EIFLKREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 233 MT----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKTKLPFVTDGVVV 282 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 337 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R +I GD++LV AG+ IP++ D++ Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWNIAPGDQILVSLAGQGIPRIDDVVWRG 385 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 423 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 424 KQVLGLDGIGEAGWRSLHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ LS + F Q++ Sbjct: 472 AQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 524 >gi|329996951|ref|ZP_08302648.1| NAD-dependent DNA ligase OB-fold domain protein [Klebsiella sp. MS 92-3] gi|328539241|gb|EGF65270.1| NAD-dependent DNA ligase OB-fold domain protein [Klebsiella sp. MS 92-3] Length = 564 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 131/633 (20%), Positives = 253/633 (39%), Gaps = 114/633 (18%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+E S L Q+I + Y++ + D YD L R FP +D Sbjct: 34 RGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPEDD----- 88 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ H + + K+ + + + +++ W ++PK+D Sbjct: 89 -----DLPPPTGDARHPVAHTGVRKLADEDSVARWMKNKSDLW-----------IQPKVD 132 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ Y +G+ V A RGDG GE +A R IP + +V++ + + + ++GE+++ + Sbjct: 133 GVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGELADSV-LQGELFLRR 191 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 + + + A G N R +G++ R + L+ F+ + G Sbjct: 192 DGHV----QQQAGG----MNARAKVAGLMMRADAAAALGQLDVFIWA-------WPDGPS 236 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-----KSIRSTLPYDIDGLVYKVDEFS 310 +M ++ + L G + + + VS ++ + RS LP+ DG++ + Sbjct: 237 DMRRRQQLL---AQAGFKYSGQYTHPVSRIEQVAQWRQRWYRSPLPFVSDGVIVREG--- 290 Query: 311 LQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 ++ R SP W+ + K+ ++ I GR+G L VA LEP + Sbjct: 291 --REPPGRVWSPGKGEWLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLDDKR 348 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH-PD 424 + + + + LD I VGD++ + AG+ IP+V ++ ERH P Sbjct: 349 VQRVNVGSVSRWQMLD-----------IGVGDQLQISLAGQGIPRVDAVVWRTAERHKPT 397 Query: 425 AQPFSFPSF-CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P F + C P+ CS Q L RL S+ A N+ Sbjct: 398 PPPAKFNALTCYFA--------TPE---------------CSEQFLSRLIWLSSKSALNV 434 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + L + ++P IF+ + +++ + G +L+ + Sbjct: 435 DGVG-ENLWRVIQQQNPM------THIFSW---LALTVEQLQAVPGISAARGQHLWHQFD 484 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R R++ ++GI +A+ L +N+ + + A + W +L P Sbjct: 485 LVRKRPFIRWVLAMGIPVPQGALAQ------LESENW----HLLAAKSEAQWRTL---PG 531 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI 636 VG+I A+ +V F +P + + L + P Sbjct: 532 VGEIRARQLVAFLHHPDVVALAQWLSGQRIPGF 564 >gi|238897097|ref|YP_002921843.1| NAD-dependent DNA ligase LigB [Klebsiella pneumoniae NTUH-K2044] gi|238549425|dbj|BAH65776.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 565 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 129/625 (20%), Positives = 249/625 (39%), Gaps = 114/625 (18%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+E S L Q+I + Y++ + D YD L R FP +D Sbjct: 35 RGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPEDD----- 89 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ H + + K+ + + + +++ W ++PK+D Sbjct: 90 -----DLPPPTGDARHPVAHTGVRKLADEDSVARWMKNKSDLW-----------IQPKVD 133 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ Y +G+ V A RGDG GE +A R IP + +V++ + + + ++GE+++ + Sbjct: 134 GVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGELADSV-LQGELFLRR 192 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 + + R N R +G++ R + L+ F+ + G Sbjct: 193 DGHVQQ--------RAGGMNARAKVAGLMMRADAAAALSQLDVFIWA-------WPDGPS 237 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-----KSIRSTLPYDIDGLVYKVDEFS 310 +M ++ + L G + + + VS ++ + RS LP+ DG++ + Sbjct: 238 DMRRRQQLL---AQAGFKYSGQYTHPVSRIEQVAQWRQRWYRSPLPFVSDGVIVREG--- 291 Query: 311 LQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 ++ R SP W+ + K+ ++ I GR+G L VA LEP + Sbjct: 292 --REPPGRVWSPGKGEWLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLDDKR 349 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH-PD 424 + + + + LD I VGD++ + AG+ IP+V ++ ERH P Sbjct: 350 VQRVNVGSVSRWQMLD-----------IGVGDQLQISLAGQGIPRVDAVVWRTAERHKPT 398 Query: 425 AQPFSFPSF-CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P F + C P+ CS Q L RL S+ A N+ Sbjct: 399 PPPAKFNALTCYFA--------TPE---------------CSEQFLSRLIWLSSKSALNV 435 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + L + ++P IF+ + +++ + G +L+ + Sbjct: 436 DGVG-ENLWRVIQQQNPM------THIFSW---LALTVEQLQALPGISAARGQHLWHQFD 485 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R R++ ++GI +A+ L +N+ + + A + W +L P Sbjct: 486 LVRKRPFIRWVLAMGIPVPQGALAQ------LESENW----HLLAAKSEAQWRTL---PG 532 Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL 628 VG+I A+ +V F +P + + L Sbjct: 533 VGEIRARQLVAFLHHPDVVALAQWL 557 >gi|326629797|gb|EGE36140.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 562 Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 132/638 (20%), Positives = 242/638 (37%), Gaps = 112/638 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 25 AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 85 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 124 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 183 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 227 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G N + V +E++ R S LP+ DG+V + Sbjct: 228 PDGPANMPERLSQL---AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVIR 284 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 285 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 342 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH--- 422 + N D +K +A DI GD++LV AG+ IP++ +++ R Sbjct: 343 KRVQRV---NIDSVKRWEA--------WDIAPGDQILVSLAGQGIPRLDEVVWRSRERSK 391 Query: 423 ---PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 PD+ S F C Q + RL SR Sbjct: 392 PVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSRS 426 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A ++G+G+ ++ F IF+ ++ +I N GF ++ Sbjct: 427 ALGLDGMGEASWRALHQTHR--FK-----HIFSW---LALTSAQIANTPGFAKGKSEQIW 476 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 N R S R+I ++ I A + S + + ++ W L Sbjct: 477 RQFNLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWWQL- 525 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 P G+ A ++++ NP+ L + P G Sbjct: 526 --PATGERRAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 561 >gi|205354659|ref|YP_002228460.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226737623|sp|B5RG75|LIGB_SALG2 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|205274440|emb|CAR39472.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 561 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 132/638 (20%), Positives = 242/638 (37%), Gaps = 112/638 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G N + V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH--- 422 + N D +K +A DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRV---NIDSVKRWEA--------WDIAPGDQILVSLAGQGIPRLDEVVWRSRERSK 390 Query: 423 ---PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 PD+ S F C Q + RL SR Sbjct: 391 PVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSRS 425 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A ++G+G+ ++ F IF+ ++ +I N GF ++ Sbjct: 426 ALGLDGMGEASWRALHQTHR--FK-----HIFSW---LALTSAQIANTPGFAKGKSEQIW 475 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 N R S R+I ++ I A + S + + ++ W L Sbjct: 476 RQFNLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWWQL- 524 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 P G+ A ++++ NP+ L + P G Sbjct: 525 --PATGERRAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560 >gi|288550204|ref|ZP_05969603.2| hypothetical protein ENTCAN_08224 [Enterobacter cancerogenus ATCC 35316] gi|288316113|gb|EFC55051.1| NAD-dependent DNA ligase adenylation domain protein [Enterobacter cancerogenus ATCC 35316] Length = 548 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 143/629 (22%), Positives = 249/629 (39%), Gaps = 118/629 (18%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A KE+++L + D+ Y++ + D YD L R F + A +E P L Sbjct: 19 KAEKEIAALSAQKIRWDEAYWKEGTSEVSDEIYDQLTARLAQWQRCFSN-APAESP---L 74 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 + G V H I ++K+ + E LR+++ W ++PK+D Sbjct: 75 PALKG-------TVKHPIAHTGVQKVASKEALRQWMYARRDLW-----------VQPKVD 116 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ Y G A RGDG GED +A +RA+P +P+ + + ++GE+++ + Sbjct: 117 GVAVTLVYRNGTLSQAVSRGDGVKGEDWTAQVRAMPLVPQSTEGALANSV-LQGELFLLR 175 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 ++ + +M + N R +G + R + + + F+ + G Sbjct: 176 DNHI--QQQMGGM------NARAKVAGAMMRHADASLLKQIGVFIWA-------WPDGPK 220 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEFS 310 M Q + L +G + V +E++ R S LP+ DG+V + S Sbjct: 221 AMQQHLTQLS---QSGFDLTARYTLPVQSADEVEKQRAHWFTSPLPFVTDGVVVR----S 273 Query: 311 LQKQLGER--ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + G+R W+I+ K+ + DI +GRTG ++ VA L PV + + Sbjct: 274 AAEPAGDRWLPGEGNWVIAWKYTPVSQVADVRDIQFAVGRTGKISVVALLAPVQLDDKRV 333 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV------NERH 422 +L + D + L DI GD +L+ AG+ IP+ +I R Sbjct: 334 QRVSLGSVDRWQRL-----------DIAPGDHILISLAGQGIPRFEKVIWRGVERQKPRP 382 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P +Q S F +P+ C Q RL S + Sbjct: 383 PASQFHSLTCFY----------ASPE---------------CMDQFFSRLTWLSSTQGLD 417 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 ++GLG+ +++ F IF+ R Q +I++ GF L+ Sbjct: 418 VKGLGEAGWRALYQAHH--FE-----HIFSWLRLNQ---AQIQSTPGFSAARGVALWHRF 467 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 N R R+I ++GI A + A S+Q + + ++W L P Sbjct: 468 NLIREQPFIRWITAMGIPVTKATLN---AAGDTSWQ-------AMRSRRAEEWQHL---P 514 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKE 631 G A IVE+ +P+ + A+ A L E Sbjct: 515 GTGKEKALQIVEWLHHPQ-VEALAAWLAE 542 >gi|238755583|ref|ZP_04616920.1| DNA ligase B [Yersinia ruckeri ATCC 29473] gi|238706183|gb|EEP98563.1| DNA ligase B [Yersinia ruckeri ATCC 29473] Length = 569 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 107/452 (23%), Positives = 203/452 (44%), Gaps = 74/452 (16%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP--NGPLNK 77 E++ +E++ D Y+Q +I D YD L +R ++H + ++ +P N + Sbjct: 35 EIAKMEEQFGQWDKAYHQQGNSLIDDDIYDQLHQR---LSH-WKSCVKALEPAVNSHITA 90 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + G + KVTH + L+K+ ++I W ++PK+DG Sbjct: 91 LAGVSD----KVTHPVAHTGLKKLTGNLAASEWILARKNLW-----------VQPKVDGV 135 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y +G RGDG G+D + + I IP ++S P ++ + GE+++ +D Sbjct: 136 AVTLTYLQGHLTQVISRGDGVRGQDWTDKAQYISAIPSLIS-PAPPLLVLHGELFLRVHD 194 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 + I N R + +G L R +P+ + + F+ + G M Sbjct: 195 HRQKDSGGI--------NARASVAGALMRKSPSSLLSQIGVFIWA-------WPDGPASM 239 Query: 258 LQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE----FS 310 ++K+R L GF ++ T ++ ++ +S LP+ DG+V + +E Sbjct: 240 VEKLRTLHRMGFTLSEEFSVPITSFTDAVHWRKI-WFQSPLPFVTDGIVIRQEEEPAGHY 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q Q G W I+ K+ Q ++ ++ IGRTG ++ V L P+ + Sbjct: 299 WQSQPG------YWSIAWKYPPFQQMAQVKSVNFTIGRTGKISAVLHLSPIKL------- 345 Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKV--VDIIVNERH----P 423 ++ ++KG++ G V R R ++ GD+V+V AG+ IP++ V V++R P Sbjct: 346 ----DDKWVKGVNL-GTVARWKRWNVLPGDQVIVSLAGQGIPRLDKVAWRVDKRDEISTP 400 Query: 424 DAQPF-SFPSF---CPICQSRVVRDLNPKTGK 451 D F +F F +C+++ + L +G+ Sbjct: 401 DMDQFHTFSCFRRESTLCETQFIARLTWLSGR 432 >gi|284923709|emb|CBG36806.1| putative DNA ligase [Escherichia coli 042] Length = 560 Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 128/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129 PLN + V H+ +RK +I W ++ + Sbjct: 83 MMPPLN------GAVIHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++G Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 180 EIFLKREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 232 MT----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAKLPFVTDGVVV 281 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 282 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPV 336 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 337 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 384 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 385 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 422 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 423 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 470 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ LS + F Q++ Sbjct: 471 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 523 >gi|170719684|ref|YP_001747372.1| NAD-dependent DNA ligase LigB [Pseudomonas putida W619] gi|257096560|sp|B1J2Z7|LIGB_PSEPW RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|169757687|gb|ACA71003.1| DNA ligase (NAD(+)) [Pseudomonas putida W619] Length = 567 Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 136/614 (22%), Positives = 237/614 (38%), Gaps = 106/614 (17%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +QAR E++ L ++ DD Y++ ++ D YD + + F DP Sbjct: 26 WSTKQARTEVAQLRATLANWDDHYHRQGIALVADELYDQARHHLLHLQQCFGQ--EFTDP 83 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + PL G + H + +EK+ + + +++T W ++ Sbjct: 84 S-PLASARG-------PIAHPVAHTGVEKLHDAAAVARWMTGKKGVW-----------VQ 124 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG +++ Y +G+ V RGDG G D S I+ + +I R L P + ++GE+ Sbjct: 125 PKVDGVAVSLVYRQGRLVQLLSRGDGLQGHDWSRHIKDLDSITR--QLPQPLDVVLQGEL 182 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRR--LNP---TDITRYLNFFVHGLGKT 246 Y L L + A +N R +G+L R L P I ++ + HG Sbjct: 183 Y------LRLQAHVQAEAGS--SNVRGTVAGMLARKQLGPEPGASIGLFVWDWPHG---- 230 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 Q E L ++ GFP + A +++ + RS LP+ DG++ + Sbjct: 231 ----PDNQGERLTQLAAWGFPDSQRFSTAIDTPEEATHWR-LHWYRSPLPFATDGVILRQ 285 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D + + +P W+ + K+ QA + ++ IGRTG +TP+ RL+PV + Sbjct: 286 DSRPPADRW--QPNAPYWIAAWKYPFAQALAEVREVRFLIGRTGKVTPLLRLKPVTLDDR 343 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 I+ +L + + L DIR GD+V + AG IP+ Sbjct: 344 RISQVSLGSLARWRAL-----------DIRPGDQVAISLAGLTIPR-------------- 378 Query: 427 PFSFPSFCPICQSRVVRDLNP-KTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIE 484 F + V R + P + H C C Q + RL + + Sbjct: 379 ------FDQVVHRAVERQVLPVPEAEQYGQHSCWQASDGCQEQFIARLVWLSGKQGLAMP 432 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G GK + A + D TL +Q + ++ G + T L S + Sbjct: 433 GTGKGTWKRLVQ----AGLVTSLTDWLTLDAQQ------LLSVPGISRKTATQLQRSFDI 482 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RN ++ LG+ A++ R + + + DW +L P + Sbjct: 483 GRNRPFAQWRKGLGVP-APAQVPRD------------ENWQTLAGRSASDWQTL---PGI 526 Query: 605 GDIIAQAIVEFYQN 618 G A + F+ + Sbjct: 527 GATRATQLANFFTH 540 >gi|226327976|ref|ZP_03803494.1| hypothetical protein PROPEN_01867 [Proteus penneri ATCC 35198] gi|225203680|gb|EEG86034.1| hypothetical protein PROPEN_01867 [Proteus penneri ATCC 35198] Length = 186 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 63/188 (33%), Positives = 107/188 (56%), Gaps = 16/188 (8%) Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +++K ++ + RFI++LGIR VG A L ++ + + A N D + Sbjct: 8 LITALDKAKSTTFARFIYALGIREVGEATASGLTAHFSTLE----------ALRNADVEA 57 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV-----SPSIGRHEKNVSSEIENKKL 652 L VP VGDI+A+ +V F+Q N ++ L+ + +P I HE + K + Sbjct: 58 LKLVPDVGDIVAKHVVNFFQEEHNRTVIDQLINDAGITWQAPIIVTHEVG-ENPFAGKTV 116 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG+L ++ R +A++ + LGA VS +S+KTD++I G+ GSKL KA +LG+ +++E+ Sbjct: 117 VLTGSLSQLTRDEAKDRLVALGAKVSGSVSKKTDMVIAGEAAGSKLVKANELGITVIDED 176 Query: 713 QFLFLLQQ 720 + + LL Q Sbjct: 177 EMIRLLDQ 184 >gi|207858976|ref|YP_002245627.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226737622|sp|B5R5H2|LIGB_SALEP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|206710779|emb|CAR35140.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 561 Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 132/638 (20%), Positives = 242/638 (37%), Gaps = 112/638 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G N + V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH--- 422 + N D +K +A DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRV---NIDSVKRWEAW--------DIAPGDQILVSLAGQGIPRLDEVVWRSRERSK 390 Query: 423 ---PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 PD+ S F C Q + RL SR Sbjct: 391 PVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSRS 425 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A ++G+G+ ++ F IF+ ++ +I N GF ++ Sbjct: 426 ALGLDGMGEASWRALHQTHR--FK-----HIFSW---LALTSAQIANTPGFAKGKSEQIW 475 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 N R S R+I ++ I A + S + + ++ W L Sbjct: 476 RQFNLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL- 524 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 P G+ A ++++ NP+ L + P G Sbjct: 525 --PATGERRAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560 >gi|237802303|ref|ZP_04590764.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025160|gb|EGI05216.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 560 Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 125/557 (22%), Positives = 222/557 (39%), Gaps = 88/557 (15%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S +A E+++L+++I+ DD Y++ I D YD + + F S + Sbjct: 29 SAARANNEITALQKQIAEWDDSYHRQGVSQIPDELYDQSRLKLKVWRSCF---RVSTVAD 85 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 PL G + H IP + K+ + + + ++ W ++P Sbjct: 86 NPLKTATGPL-------AHPIPHTGVNKLADEKSVTAWLRGRTDVW-----------IQP 127 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ YE G+ V A RGDG G+D + R I IP+ L E + ++GE+Y Sbjct: 128 KVDGVAVTLVYEGGRLVQAISRGDGKKGKDWTPQARLIKAIPQ--QLPHAEYLVLQGELY 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGIL--RRLNPTDITRYLNFFVHGLGKTSEIF 250 +D + I N R+ +G+L R ++P +G + Sbjct: 186 WRLDDHIQAISGSI--------NARSKVAGLLARRTISPQQ--------ADAIGLLVWDW 229 Query: 251 AKGQYEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 G +M Q++ L GF + H S + E R+ LP+ DG++ + Sbjct: 230 PNGPADMPQRLAGLQAQGFEDSATYTHRLENHAQASQWRE-HWYRNPLPFATDGVIIRQG 288 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + ++ +A +P W+ + K QA + ++ IGR+G +TPV L+PV + Sbjct: 289 QRPPAQRW--QASAPYWIAAWKHPYAQALAEVRKVNFNIGRSGRITPVLELKPVRL---- 342 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +D ++G + R DIR GD++ V AG IP++ ++ R + Sbjct: 343 --------DDRTVSRISTGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVVA--RAAERV 392 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + P + ++ + T G C +Q RL + + G+ Sbjct: 393 SMTIPHASDFHE--------------LSCWQATPG--CESQFRARLIWLSGKKGLALPGV 436 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G D +S I D TL ++ NI G + S L DS+ R Sbjct: 437 GPGTWDKLIESGQ----ISGLLDWMTLNH------AELANIPGLAERSSAKLLDSLQTAR 486 Query: 547 NISLERFIFSLGIRHVG 563 ++ ++G+ G Sbjct: 487 AKPFLAWLKAIGMPPTG 503 >gi|271502618|ref|YP_003335644.1| DNA ligase [Dickeya dadantii Ech586] gi|270346173|gb|ACZ78938.1| DNA ligase (NAD(+)) [Dickeya dadantii Ech586] Length = 561 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 99/414 (23%), Positives = 180/414 (43%), Gaps = 56/414 (13%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P A S +A +E++ L Q+++ D+ YY + + D YD L++ F Sbjct: 23 PCPAWSPARAEQEIARLGQQLTQWDNAYYDRGQSPVDDQVYDQLRQTLATWQVCF----- 77 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 D +G + S K H + L+K+ +L+++I + W Sbjct: 78 QADADGFAVSLP-----SSGKQPHPVAHTGLKKLTEPAELKQWIAQHRNLW--------- 123 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PKIDG +T+ YE+GK V A RG+G GED + +R + +P+ LS I + + Sbjct: 124 --IQPKIDGVAVTLVYEQGKLVSAISRGNGRQGEDWTDKVRQMNAVPQQLS-GISGRLVL 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 +GE+Y+S I N R +G +RR P+ + ++ F+ Sbjct: 181 QGELYLSVTAHRQQQTGGI--------NARAQVAGEMRRKQPSPLLSRIDVFIWA----- 227 Query: 248 EIFAKGQYEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + G +M L +R LGF + Q + + E + ++ LP+ DG+V Sbjct: 228 --WPDGPADMSTRLAALRELGFGLTADYTQPIASFEEAARWRE-RWYQAPLPFVTDGVVL 284 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + + + W ++ K+ T + +D++IGRTG +T V +++P+ + Sbjct: 285 HQSQEPAGRYWQD--TPAEWAVAWKYPLVNRVTEVTGVDVEIGRTGRMTVVLQVQPMMLD 342 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417 ++ L G V R + D+ GDRV + AG IP++ ++ Sbjct: 343 DKNVSRVNL------------GSVSRWRQWDVLPGDRVSISLAGLGIPRLDAVV 384 >gi|304399036|ref|ZP_07380905.1| DNA ligase (NAD(+)) [Pantoea sp. aB] gi|304353496|gb|EFM17874.1| DNA ligase (NAD(+)) [Pantoea sp. aB] Length = 583 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 109/454 (24%), Positives = 194/454 (42%), Gaps = 71/454 (15%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A +E+ L+Q++ + DD YY+ + + D++YDAL++R H F + P P Sbjct: 32 RATEEIGRLQQQLQHWDDAYYRQGQSPVTDTDYDALQQRLVTWQHCFSASQPTYSPQLPG 91 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 GE L + H+ ++ +R + Y ++D ++PK+D Sbjct: 92 K---GE---HLHPIAHT----------GVKKMRDKLALAYWMQGRRD-----LWVQPKVD 130 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++ Y G+ V RGDG GE+ A IP IP + + E++ ++GE+++ Sbjct: 131 GIAVSLVYRHGRLVSLLSRGDGLRGEEWLAKAAWIPAIPLHIETPLDEVV-LQGELFLLM 189 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 N + + I G+ N R+ +G + T + L F+ + ++ Sbjct: 190 NG----HQQAIDGGK----NARSLVAGAMMSRQRTPLLDSLGVFIWAWPDGPATMTE-RH 240 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGI-----VSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + LG A H + V+ + E + + LP+ DG+V Sbjct: 241 EQLSRW-GLGI-------AAEWSHNVKDEEDVAIWRE-RWFHAALPFVTDGVVVHQSLRP 291 Query: 311 LQKQL--GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 K GE W ++ K+ + S +L +D IGRTG + V L+PV + Sbjct: 292 AGKNWLPGEGI----WAVAWKYQPPEVSAEVLSVDFLIGRTGKIAAVLNLQPVQL----- 342 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH---- 422 ++ ++ ++ DI GD V + AG+ IP++ +I V ERH Sbjct: 343 ------DDKTVRRVNVGSLRRWQESDIVAGDVVTLSLAGQGIPRLERVIWRVAERHYPQP 396 Query: 423 PDAQ---PFSFPSFCPICQSRVVRDLNPKTGKLV 453 P+A P S +F CQ +++ L + K V Sbjct: 397 PEASRYTPLSCYTFSAECQKQLLAKLRWLSQKTV 430 >gi|168260506|ref|ZP_02682479.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350522|gb|EDZ37153.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 561 Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 131/620 (21%), Positives = 240/620 (38%), Gaps = 110/620 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ A+G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + +V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKNASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVN--ERH 422 + + G V R DI GD++LV AG+ IP++ +++ ER Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSCERS 389 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P S N T +A C Q + RL SR A Sbjct: 390 KPVPPDSH--------------FNSLTCFYASA-------TCQEQFISRLVWLGSRSALG 428 Query: 483 IEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 ++G+G+ ++ + FS TL ++ +I N GF ++ Sbjct: 429 LDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKSEQIWR 476 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 N R S R+I ++ I A + S + + ++ W L Sbjct: 477 QFNLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL-- 524 Query: 601 VPLVGDIIAQAIVEFYQNPR 620 P G+ A ++++ NP+ Sbjct: 525 -PATGERRAGRVIDWRNNPQ 543 >gi|257484999|ref|ZP_05639040.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 181 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 10/184 (5%) Query: 48 YDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDL 107 YD L A+ P L P+ P ++G + +V H +P LSL + D+ Sbjct: 1 YDRLFHELKALEAENPHLV---TPDSPTQRVGSAALSAFTQVRHEMPMLSLGNAFEESDM 57 Query: 108 RKFITRIYRFWQKKDDN------SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGE 161 +F R+ + + ++ EPK+DG +++ Y G V A RGDG +GE Sbjct: 58 LEFDRRVTEGLDLPAGDLFGAGSKVQYSCEPKLDGLAVSLLYRDGALVCGATRGDGTTGE 117 Query: 162 DVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAA 220 D+S +R + IP ++ P+++EVRGEV++SK F LN + +G K +ANPRNAA Sbjct: 118 DISVNVRTVRNIPLKLKGKGWPDVLEVRGEVFMSKAGFERLNASQLEIGGKTFANPRNAA 177 Query: 221 SGIL 224 +G L Sbjct: 178 AGSL 181 >gi|167036006|ref|YP_001671237.1| NAD-dependent DNA ligase LigB [Pseudomonas putida GB-1] gi|189046591|sp|B0KLZ2|LIGB_PSEPG RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|166862494|gb|ABZ00902.1| DNA ligase (NAD(+)) [Pseudomonas putida GB-1] Length = 566 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 118/535 (22%), Positives = 218/535 (40%), Gaps = 93/535 (17%) Query: 32 DDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP----NGPLNKIGGEMNLSLF 87 D+ Y++ ++ D YD ++R + F LA S P GPL Sbjct: 46 DEHYHRQGIALVADELYDQSRQRLVHLQQCF-GLAPSPSPLTSARGPL------------ 92 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 H +P ++K+ + + + +++ W ++PK DG ++ Y +G+ Sbjct: 93 --PHPVPHTGVDKLADRQAVARWMAGKTGVW-----------VQPKFDGVAASLIYRQGQ 139 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV--RGEVYISKNDFLALNDEM 205 V RGDG G D S R IP + V + +P+ I++ +GE+Y L LN+ + Sbjct: 140 LVQLISRGDGLQGHDWS---RHIPQLGAV-TRQLPQAIDLHLQGELY------LRLNEHV 189 Query: 206 IAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCL 264 A + AN R +G+L R T + + FV G E Q + L ++ L Sbjct: 190 QA--KAGSANARGTVAGLLARKQLTREQGNTIGLFVWGWPHGPER----QADRLAQLAQL 243 Query: 265 GFPVNNGVRQA-NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 GFP + A +T + RS LP+ DG++ ++ ++ +A++P Sbjct: 244 GFPDSQHYSIAVDTLEDAARWREHW--YRSPLPFASDGVILRLGSRPPAERW--QAKAPY 299 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W+ + K+ QA + D+ ++GRTG +TP+A ++PV + IT +L + + L Sbjct: 300 WIAAWKYPYVQALAEVRDVRFRVGRTGRITPIAHVQPVTLDDRRITQVSLGSLARWQAL- 358 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVR 443 DIR GD+V + AG IP++ ++ R + QP P+ + + Sbjct: 359 ----------DIRPGDQVAISLAGLTIPRLEHVV--HRAVERQPLGAPA---PGRHHALS 403 Query: 444 DLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFS 503 P G C Q + RL + + G + Sbjct: 404 CWQPSEG-------------CEEQFIARLTWLSGKQGLALPRTGPGTWRRLVDA------ 444 Query: 504 IRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 + ++ Q +++ + G ++ L S ++ R+ ++++ LG Sbjct: 445 ----GLVTSMTDWLQLDAERLQQVPGISSLTAAQLLGSFDQARSRPFDQWLRGLG 495 >gi|170681126|ref|YP_001745947.1| NAD-dependent DNA ligase LigB [Escherichia coli SMS-3-5] gi|226737619|sp|B1LK84|LIGB_ECOSM RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|170518844|gb|ACB17022.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli SMS-3-5] Length = 560 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 126/592 (21%), Positives = 230/592 (38%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DA 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV ++ Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 + L+++ GF + T+ V +E+ +R + LP+ DG+V + Sbjct: 233 T----DRLKELATAGFTLT------QTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|331659983|ref|ZP_08360921.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA206] gi|331053198|gb|EGI25231.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA206] Length = 560 Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 127/592 (21%), Positives = 231/592 (39%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV ++ Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 + L+++ GF + T+ V +E+ +R + LP+ DG+V + Sbjct: 233 T----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKTKLPFVTDGVVVR 282 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGSAKSKSA 471 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ LS + F Q++ Sbjct: 472 QLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 523 >gi|315296990|gb|EFU56270.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 16-3] Length = 561 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 127/592 (21%), Positives = 231/592 (39%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 25 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 84 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 123 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV ++ Sbjct: 182 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 + L+++ GF + T+ V +E+ +R + LP+ DG+V + Sbjct: 234 T----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKTKLPFVTDGVVVR 283 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 284 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 338 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 339 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 386 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 387 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 424 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 425 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGSAKSKSA 472 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ LS + F Q++ Sbjct: 473 QLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 524 >gi|301018976|ref|ZP_07183199.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 69-1] gi|300399470|gb|EFJ83008.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 69-1] Length = 561 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 128/593 (21%), Positives = 233/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 25 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGIYDQLSARLTQWQRCFGNETR-DV 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129 PLN + V H+ +RK +I W ++ + Sbjct: 84 MMPPLN------GAVIHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ S + ++G Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTASGPLANST-LQG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 EIFLKREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 233 MT----DRLKELTTAGFTLT------QTYTRAVKNADEVARVRNAWWKAKLPFVTDGVVV 282 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 RA-----AKEPESRYWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 337 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 385 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 423 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 424 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471 Query: 536 TNLYDSINKRRNISLERFIFSLGIR----HVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ LS + F Q++ Sbjct: 472 AQLWHQFNLARKQPFTRWVMAMGIPLTRVALNASDERSWSQLLLSTEQFWQQL 524 >gi|166226372|sp|Q8FC83|LIGB_ECOL6 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 560 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 128/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV + Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G + M +++ L G T+ V +E+ +R + LP+ DG+V + Sbjct: 226 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + I + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 LDDKKIQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|227883837|ref|ZP_04001642.1| NAD-dependent DNA ligase LigB [Escherichia coli 83972] gi|300984900|ref|ZP_07177188.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 45-1] gi|301047437|ref|ZP_07194516.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 185-1] gi|227839115|gb|EEJ49581.1| NAD-dependent DNA ligase LigB [Escherichia coli 83972] gi|300300645|gb|EFJ57030.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 185-1] gi|300408329|gb|EFJ91867.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 45-1] gi|307555765|gb|ADN48540.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli ABU 83972] gi|315292916|gb|EFU52268.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 153-1] Length = 561 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 128/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 25 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 84 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 123 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV + Sbjct: 182 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G + M +++ L G T+ V +E+ +R + LP+ DG+V + Sbjct: 227 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 283 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 284 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 338 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + I + G V R DI GD++LV AG+ IP++ D++ Sbjct: 339 LDDKKIQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 386 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 387 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 424 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 425 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 472 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 473 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 524 >gi|26250293|ref|NP_756333.1| NAD-dependent DNA ligase LigB [Escherichia coli CFT073] gi|26110723|gb|AAN82907.1|AE016769_22 Hypothetical DNA ligase-like protein yicF [Escherichia coli CFT073] Length = 562 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 128/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 85 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV + Sbjct: 183 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 227 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G + M +++ L G T+ V +E+ +R + LP+ DG+V + Sbjct: 228 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 284 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 285 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 339 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + I + G V R DI GD++LV AG+ IP++ D++ Sbjct: 340 LDDKKIQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 387 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 388 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 425 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 426 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 473 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 474 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|331665272|ref|ZP_08366173.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA143] gi|331057782|gb|EGI29768.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA143] Length = 560 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 126/588 (21%), Positives = 232/588 (39%), Gaps = 112/588 (19%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A++E+S L+Q+I DD Y++ K + D YD L R F + R + PL Sbjct: 29 RAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DVMMPPL 87 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFTLEPKI 134 N + V H+ +RK +I W ++ + ++PK+ Sbjct: 88 N------GAVIHPVAHT-------------GVRKMADKIALSLWMRERSD---LWVQPKV 125 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE+++ Sbjct: 126 DGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGEIFLK 184 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 + + +M + N R +G++ R + +D L FV ++ Sbjct: 185 REGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMT--- 233 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEF 309 + L+++ GF + T+ V +E+ +R + LP+ DG+V + Sbjct: 234 -DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKAKLPFVTDGVVVRA--- 283 Query: 310 SLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 K+ R P W+++ K+ + I +G++G ++ VA L PV + Sbjct: 284 --AKEPESRHWLPGQAEWLVAWKYQPVAQVVEVKAIQFAVGKSGKISVVASLAPVMLDDK 341 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHP 423 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 342 KVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTK 389 Query: 424 DAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P + F S S V C Q + RL S+ Sbjct: 390 PTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLG 427 Query: 483 IEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 ++G+G+ ++ + FS + + +++N G L+ Sbjct: 428 LDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWH 475 Query: 541 SINKRRNISLERFIFSLGIR----HVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ LS + F Q++ Sbjct: 476 QFNLARKQPFTRWVMAMGIPLTRVALNASDERSWSQLLLSTEQFWQQL 523 >gi|215488942|ref|YP_002331373.1| NAD-dependent DNA ligase LigB [Escherichia coli O127:H6 str. E2348/69] gi|254809143|sp|B7UM69|LIGB_ECO27 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|215267014|emb|CAS11459.1| conserved inner membrane protein [Escherichia coli O127:H6 str. E2348/69] Length = 561 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 125/593 (21%), Positives = 232/593 (39%), Gaps = 111/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHRDA 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFT 129 PLN + V H+ +RK +I W ++ + Sbjct: 84 MMPPLN------GAVIHPVAHT-------------GVRKMADKIALSLWMRERSD---LW 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++G Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R + ++ R + +D L FV ++ Sbjct: 181 EIFLKREGH--IQQQMGGI------NARAKVADLMMRQDDSDTLNSLGVFVWAWPDGPQL 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 233 MT----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNAWWKTKLPFVTDGVVV 282 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 337 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R +I GD++LV AG+ IP++ D++ Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWNIAPGDQILVSLAGQGIPRIDDVVWRG 385 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 423 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 424 KQVLGLDGIGEAGWRSLHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ LS + F Q++ Sbjct: 472 AQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLLSTEQFWQQL 524 >gi|312948208|gb|ADR29035.1| NAD-dependent DNA ligase LigB [Escherichia coli O83:H1 str. NRG 857C] Length = 560 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 128/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV + Sbjct: 181 IFLQRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G + M +++ L G T+ V +E+ +R + LP+ DG+V + Sbjct: 226 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + I + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 LDDKKIQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|325499453|gb|EGC97312.1| NAD-dependent DNA ligase LigB [Escherichia fergusonii ECD227] Length = 547 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 128/611 (20%), Positives = 236/611 (38%), Gaps = 112/611 (18%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A +E+S L+ ++ D Y++ K + D YD L R F D A SE P+ Sbjct: 15 RANEEISRLQLQLKQWSDTYWKEGKSTVEDHVYDQLSARLAQWQRCFGDNADSETMMPPI 74 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 + V H + + K+ + L++++ W ++PK+D Sbjct: 75 SGT----------VMHPVAHTGVRKLADKNALQQWMRARRDVW-----------VQPKVD 113 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ Y GK A RG+G GED + +R IP++P+ +S + ++GE+Y+ + Sbjct: 114 GVAVTLVYRDGKLNQAISRGNGLKGEDWTQRLRLIPSVPQNVSGPLANST-LQGEIYLQR 172 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 + +M + N R+ +G++ R TD L F+ + Sbjct: 173 EGH--IQQQMGGM------NARSKVAGMMMRHGNTDTLNSLGVFIWAWPDGPQSMP---- 220 Query: 256 EMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV----DEFS 310 E LQ + GF + R+ N+ + +E ++ LP+ DG+V +V D Sbjct: 221 ERLQILTAAGFILTQQYTREVNSAREVEQIRSEW--WKTKLPFVTDGVVVRVGKEPDSRH 278 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q G+ W+ + K+ + I +G++G + VA L P+ + + Sbjct: 279 WQPGQGD------WLAAWKYPPIAQVAEVNAIHFTVGKSGKIAVVASLAPIKLDDKRVQR 332 Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIV--NERHPDAQP 427 + G V R DI GD++LV AG+ IP++ +++ ER P Sbjct: 333 VNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDNVVWRGTERTKPTPP 380 Query: 428 FS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + F S S V C Q + RL S+ ++G+ Sbjct: 381 ENRFNSLTCYFASDV----------------------CREQFISRLVWLGSKQVLGLDGI 418 Query: 487 GKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+ ++ + FS + + +++N G L+ N Sbjct: 419 GEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFNL 466 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 R R++ ++GI A + L + S+Q +++ DW L P Sbjct: 467 ARKQPFTRWLMAMGIPLTQAALKSHL---FDSWQ-------QVMSQTKQDWQQL---PGT 513 Query: 605 GDIIAQAIVEF 615 G A ++++ Sbjct: 514 GSRRASQVIKW 524 >gi|238794537|ref|ZP_04638145.1| DNA ligase B [Yersinia intermedia ATCC 29909] gi|238726117|gb|EEQ17663.1| DNA ligase B [Yersinia intermedia ATCC 29909] Length = 567 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 123/550 (22%), Positives = 221/550 (40%), Gaps = 87/550 (15%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI--AHAFPDLARSEDPN 72 E+ E+++L+Q++ Y+Q +I D YD L+ + H PD N Sbjct: 35 ERMSAEINTLKQQLDKWSVAYHQQGISLIADDVYDQLQEKLALWQSCHRLPD-------N 87 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 I G H + L+K+ N L ++ W ++P Sbjct: 88 HGNTLIPGNGTFR-----HPVAHTGLKKLKNEAALANWMVGRKSLW-----------VQP 131 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVY 192 K+DG +T+ Y+ GK + RG+G G++ + I IP+ ++ P + ++GE++ Sbjct: 132 KVDGVAVTLVYQDGKLIQLLSRGNGLKGQNWTDKAPFITAIPQYIA-TAPPWLTLQGELF 190 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL-GKTSEIFA 251 + D L + + N R A +G L R +P + L F+ S + Sbjct: 191 LQMGDHLQASSGGV--------NARAAVAGALMRKSPAALLPQLGIFIWAWPDGPSSMVE 242 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 KG E+LQ M GFP+ + V+++ + LP+ DG+V + + + Sbjct: 243 KG--ELLQAM---GFPLTAKYSKPIASSRDVAHFRH-HWFHTALPFVTDGVV--IRQAAE 294 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 +A W ++ K+ +Q T + DI IGRTG +T V + PV I Sbjct: 295 PAGRNWQAVPGYWAVAWKYPAQQQITEIKDIHFTIGRTGRVTVVLLVSPVKI-------- 346 Query: 372 TLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQPF 428 ++ +I+ ++ G V R + DI GD++++ AG IP++ ++ V++R Q F Sbjct: 347 ---DDKWIRRVNV-GSVSRWRQWDITSGDQIIIALAGHGIPRLESVVWRVSQR----QEF 398 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 + P+ Q R ++P+ C Q L RL +I+ + Sbjct: 399 TPPAGDQFHQLSCFRLISPE---------------CEPQLLSRLIWLSGPKGLDIQSISS 443 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +++ I +L R Q I + G G N+Y R Sbjct: 444 G----YWRDLIHHGLINDLVGWLSLTRDQ------IAGVPGIGTARAENIYQQFQSTRQK 493 Query: 549 SLERFIFSLG 558 +++ +LG Sbjct: 494 PFSQWLQALG 503 >gi|218691930|ref|YP_002400142.1| NAD-dependent DNA ligase LigB [Escherichia coli ED1a] gi|254809145|sp|B7N287|LIGB_ECO81 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|218429494|emb|CAR10458.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a] Length = 560 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 128/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV + Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G + M +++ L G T+ V +E+ +R + LP+ DG+V + Sbjct: 226 PDGPHLMTDRLKDL---ATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + I + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 LDDKKIQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSKEQFWQQL 523 >gi|197247797|ref|YP_002148670.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|226737620|sp|B5EXF2|LIGB_SALA4 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|197211500|gb|ACH48897.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 561 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 131/641 (20%), Positives = 241/641 (37%), Gaps = 118/641 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + +V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 A ++G+G+ ++ + FS TL ++ +I N GF Sbjct: 425 SALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKSE 472 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 ++ N R S R+I ++ I A + S + + ++ W Sbjct: 473 QIWRQFNLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWR 522 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 L P G+ A ++++ NP+ L + P G Sbjct: 523 QL---PATGERRAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560 >gi|218702416|ref|YP_002410045.1| NAD-dependent DNA ligase LigB [Escherichia coli IAI39] gi|226737615|sp|B7NQ11|LIGB_ECO7I RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|218372402|emb|CAR20276.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39] Length = 560 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 124/595 (20%), Positives = 231/595 (38%), Gaps = 116/595 (19%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DA 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV ++ Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 + L+++ GF + T+ V +E+ +R + LP+ DG+V + Sbjct: 233 T----DRLKELATAGFTLT------QTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVM 337 Query: 363 IGGALITNATL----HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 + + + H +++ DI GD++LV AG+ IP++ D++ Sbjct: 338 LDDKKVQRVNIGSVRHWQEW---------------DIAPGDQILVSLAGQGIPRIDDVVW 382 Query: 419 N--ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHF 475 ER P + F S S V C Q + RL Sbjct: 383 RGAERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWL 420 Query: 476 VSRDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDV 533 S+ ++G+G+ ++ + FS + + +++N G Sbjct: 421 GSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKS 468 Query: 534 SVTNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 469 KSAQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|32396673|gb|AAP49294.1| NAD-dependent DNA ligase [Geobacillus thermodenitrificans] Length = 121 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 1/118 (0%) Query: 214 ANPRNAASGILRRL-NPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L + +R L+ FV+GL E+ + E L ++ LGF VN Sbjct: 1 ANPRNAAAGSLRQLESKVAASRQLDLFVYGLANAEELGIESHSEALDYLQALGFKVNPER 60 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 R+ ++++ NE R LPY+IDG+V KVD F+ Q++LG A+SPRW I++KF Sbjct: 61 RRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKSPRWAIAYKF 118 >gi|197263258|ref|ZP_03163332.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241513|gb|EDY24133.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 561 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 131/641 (20%), Positives = 241/641 (37%), Gaps = 118/641 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ A+G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + +V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRDRS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 A ++G+G+ ++ + FS TL ++ +I N GF Sbjct: 425 SALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKSE 472 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 ++ N R R+I ++ I A + S + + ++ W Sbjct: 473 QIWRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWR 522 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 L P G+ A ++++ NP+ L + P G Sbjct: 523 QL---PATGERRAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560 >gi|323189446|gb|EFZ74727.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli RN587/1] Length = 561 Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 124/592 (20%), Positives = 228/592 (38%), Gaps = 109/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + + Sbjct: 24 AWSSARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGEETHRDA 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 84 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 123 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV ++ Sbjct: 182 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 233 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 + L+ + GF + T+ V +E+ +R + LP+ DG+V + Sbjct: 234 T----DRLKDLATAGFTLT------QTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 283 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 284 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVM 338 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + ++ G V R DI GD++LV AG+ IP++ D++ Sbjct: 339 LDDKKVQRVSI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 386 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL + Sbjct: 387 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGLK 424 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 425 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 472 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 473 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 524 >gi|166226369|sp|Q0SYH4|LIGB_SHIF8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 560 Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 125/585 (21%), Positives = 229/585 (39%), Gaps = 96/585 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV ++ Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 232 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P ++R NP T + C Q + RL S+ ++G Sbjct: 392 PP----------ENR----FNPLTCYFASD-------VCQEQFISRLVWLGSKQVLGLDG 430 Query: 486 LGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+ ++ + FS + + +++N G L+ N Sbjct: 431 IGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFN 478 Query: 544 KRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 RN R++ ++GI + A RS ++ S + F Q++ Sbjct: 479 LARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|332750605|gb|EGJ81013.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri 4343-70] Length = 556 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 125/585 (21%), Positives = 229/585 (39%), Gaps = 96/585 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 20 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 78 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 79 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 117 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 118 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV ++ Sbjct: 177 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 228 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 229 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 282 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 283 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 339 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 340 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 387 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P ++R NP T + C Q + RL S+ ++G Sbjct: 388 PP----------ENR----FNPLTCYFASD-------VCQEQFISRLVWLGSKQVLGLDG 426 Query: 486 LGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+ ++ + FS + + +++N G L+ N Sbjct: 427 IGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFN 474 Query: 544 KRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 RN R++ ++GI + A RS ++ S + F Q++ Sbjct: 475 LARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 519 >gi|91213164|ref|YP_543150.1| NAD-dependent DNA ligase LigB [Escherichia coli UTI89] gi|117625919|ref|YP_859242.1| NAD-dependent DNA ligase LigB [Escherichia coli APEC O1] gi|237703441|ref|ZP_04533922.1| NAD-dependent DNA ligase LigB [Escherichia sp. 3_2_53FAA] gi|91074738|gb|ABE09619.1| hypothetical DNA ligase-like protein YicF [Escherichia coli UTI89] gi|115515043|gb|ABJ03118.1| NAD-dependent DNA ligase [Escherichia coli APEC O1] gi|226902705|gb|EEH88964.1| NAD-dependent DNA ligase LigB [Escherichia sp. 3_2_53FAA] gi|294489423|gb|ADE88179.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli IHE3034] gi|323949886|gb|EGB45770.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli H252] gi|323954950|gb|EGB50729.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli H263] Length = 562 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 127/591 (21%), Positives = 228/591 (38%), Gaps = 110/591 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 85 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV + Sbjct: 183 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 227 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G + M +++ L G T+ V +E+ +R + LP+ DG+V + Sbjct: 228 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 284 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 285 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 339 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 340 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 387 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 388 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 425 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 426 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 473 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQE 583 L+ N R R++ ++GI + A RS ++ S + F Q+ Sbjct: 474 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQ 524 >gi|315285425|gb|EFU44870.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 110-3] gi|324008103|gb|EGB77322.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 57-2] Length = 561 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 127/591 (21%), Positives = 228/591 (38%), Gaps = 110/591 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 25 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 84 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 123 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV + Sbjct: 182 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G + M +++ L G T+ V +E+ +R + LP+ DG+V + Sbjct: 227 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 283 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 284 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 338 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 339 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 386 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 387 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 424 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 425 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 472 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQE 583 L+ N R R++ ++GI + A RS ++ S + F Q+ Sbjct: 473 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQ 523 >gi|110807676|ref|YP_691196.1| NAD-dependent DNA ligase LigB [Shigella flexneri 5 str. 8401] gi|110617224|gb|ABF05891.1| putative enzyme [Shigella flexneri 5 str. 8401] Length = 562 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 125/585 (21%), Positives = 229/585 (39%), Gaps = 96/585 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 85 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV ++ Sbjct: 183 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 234 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 235 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 288 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 289 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 346 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 393 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P ++R NP T + C Q + RL S+ ++G Sbjct: 394 PP----------ENR----FNPLTCYFASD-------VCQEQFISRLVWLGSKQVLGLDG 432 Query: 486 LGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+ ++ + FS + + +++N G L+ N Sbjct: 433 IGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFN 480 Query: 544 KRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 RN R++ ++GI + A RS ++ S + F Q++ Sbjct: 481 LARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|172044492|sp|A8A6A9|LIGB_ECOHS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 560 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 126/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDVYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 83 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 232 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 281 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 282 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 336 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 337 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 384 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL + Sbjct: 385 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGA 422 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 423 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 470 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 471 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|168233263|ref|ZP_02658321.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470644|ref|ZP_03076628.1| NAD-dependent DNA ligase adenylation domain [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457008|gb|EDX45847.1| NAD-dependent DNA ligase adenylation domain [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332601|gb|EDZ19365.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 561 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 120/563 (21%), Positives = 217/563 (38%), Gaps = 105/563 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASTLNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G N + V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTNKYSLAVKNASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 A ++G+G+ ++ + FS TL ++ +I N GF Sbjct: 425 SALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKSE 472 Query: 537 NLYDSINKRRNISLERFIFSLGI 559 ++ N R S R+I ++ I Sbjct: 473 QIWRQFNLARRQSFTRWIMAMDI 495 >gi|218560719|ref|YP_002393632.1| NAD-dependent DNA ligase LigB [Escherichia coli S88] gi|166226370|sp|A1AHH8|LIGB_ECOK1 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|166226373|sp|Q1R4U5|LIGB_ECOUT RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|226737614|sp|B7MFK8|LIGB_ECO45 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|218367488|emb|CAR05270.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88] gi|307628720|gb|ADN73024.1| NAD-dependent DNA ligase LigB [Escherichia coli UM146] Length = 560 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 127/591 (21%), Positives = 228/591 (38%), Gaps = 110/591 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV + Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G + M +++ L G T+ V +E+ +R + LP+ DG+V + Sbjct: 226 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQE 583 L+ N R R++ ++GI + A RS ++ S + F Q+ Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQ 522 >gi|270265241|ref|ZP_06193503.1| DNA ligase B [Serratia odorifera 4Rx13] gi|270040875|gb|EFA13977.1| DNA ligase B [Serratia odorifera 4Rx13] Length = 567 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 90/376 (23%), Positives = 164/376 (43%), Gaps = 63/376 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A E+ + E+++L+ ++ D YYQ +I D YD+L+++ + H L R E+ Sbjct: 29 AWRPERLQLEITALKNQLERWDVAYYQQGDSLIEDQVYDSLRQKLQ-LWHRCAGLERVEE 87 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P+ L K H + L K+ + + +++ W + Sbjct: 88 PSS---------LLPAGKTPHPVAHTGLHKLADPAAVDQWLRGRSDVW-----------V 127 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG IT+ Y G+ A RG+G GE+ +RAIP IP + + P + ++GE Sbjct: 128 QPKVDGVAITLVYRDGELAAAVSRGNGLQGENWLEKVRAIPAIPAAVK-DAPATLILQGE 186 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ N + + I G N R+ +G L + + + + + FV + Sbjct: 187 LFLMVNG----HQQKIHGG----INARSTVAGALMKNRLSPVLQQIGLFVWA-------W 231 Query: 251 AKGQYEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 G EM LQ++ +GFP+ Q + V + E + R LP+ DG+V Sbjct: 232 PDGPKEMTQRLQQLAAMGFPLALAYSQPVSSLDDVRQWRE-RWYREALPFVTDGVVI--- 287 Query: 308 EFSLQKQLGERARSPR----------WMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 +ARSP+ W ++ K+ Q R+ D++ +GRTG + V + Sbjct: 288 ---------HQARSPQGRYWQAKPGDWAVAWKYPPVQQVARVNDVEFSVGRTGKIAVVLK 338 Query: 358 LEPVNIGGALITNATL 373 L+P+ + ++ L Sbjct: 339 LDPLRMDDKWVSRVNL 354 >gi|167549012|ref|ZP_02342771.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325606|gb|EDZ13445.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 561 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 130/639 (20%), Positives = 240/639 (37%), Gaps = 114/639 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + +V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A ++G+G+ ++ F IF+ ++ +I N LGF + Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTLGFAKGKSEQI 474 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + N R R+I ++ I A + S + + ++ W L Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 P G+ A ++++ NP+ L + P G Sbjct: 525 ---PATGERRAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 560 >gi|191170589|ref|ZP_03032142.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli F11] gi|190909397|gb|EDV68983.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli F11] Length = 562 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 125/592 (21%), Positives = 233/592 (39%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ + I D YD L R F + R Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPR--- 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + + + G V H + + K+ + LR ++ ++ N ++ + Sbjct: 83 -DAMMPPLAG-------TVMHPVAHTGVRKLADKNALRLWM---------REHNDLW--V 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV + Sbjct: 183 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 227 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G + M +++ L G T+ V +E+ +R + LP+ DG+V + Sbjct: 228 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 284 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 285 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 339 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 340 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 387 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 388 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 425 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 426 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 473 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 474 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|166226371|sp|Q0TBG2|LIGB_ECOL5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 560 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 125/592 (21%), Positives = 233/592 (39%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ + I D YD L R F + R Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPR--- 80 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + + + G V H + + K+ + LR ++ ++ N ++ + Sbjct: 81 -DAMMPPLAG-------TVMHPVAHTGVRKLADKNALRLWM---------REHNDLW--V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV + Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G + M +++ L G T+ V +E+ +R + LP+ DG+V + Sbjct: 226 PDGPHLMTDRLKDL---ATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|256025622|ref|ZP_05439487.1| NAD-dependent DNA ligase LigB [Escherichia sp. 4_1_40B] gi|307140346|ref|ZP_07499702.1| NAD-dependent DNA ligase LigB [Escherichia coli H736] gi|315618649|gb|EFU99235.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli 3431] Length = 560 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 127/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 83 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 232 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 281 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 282 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 336 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 337 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 384 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 385 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 422 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 423 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 470 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 471 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|213024747|ref|ZP_03339194.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 175 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 90/149 (60%), Gaps = 4/149 (2%) Query: 98 LEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157 L+ +++ E F R+ + K ++ + E K+DG ++I YE G V AA RGDG Sbjct: 1 LDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELKLDGLAVSILYENGVLVSAATRGDG 58 Query: 158 HSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANP 216 +GED+++ +R I IP ++ NIP +EVRGEV++ + F +N++ G K +ANP Sbjct: 59 TTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANP 118 Query: 217 RNAASGILRRLNP-TDITRYLNFFVHGLG 244 RNAA+G LR+L+P R L FF +G+G Sbjct: 119 RNAAAGSLRQLDPRITAKRPLTFFCYGVG 147 >gi|157163128|ref|YP_001460446.1| NAD-dependent DNA ligase LigB [Escherichia coli HS] gi|157068808|gb|ABV08063.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli HS] Length = 562 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 126/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDVYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 85 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 234 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 283 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 284 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 338 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 339 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 386 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL + Sbjct: 387 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGA 424 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 425 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 472 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 473 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|110643888|ref|YP_671618.1| NAD-dependent DNA ligase LigB [Escherichia coli 536] gi|300983472|ref|ZP_07176619.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 200-1] gi|110345480|gb|ABG71717.1| hypothetical DNA ligase-like protein YicF [Escherichia coli 536] gi|300306936|gb|EFJ61456.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 200-1] gi|324012718|gb|EGB81937.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 60-1] Length = 561 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 125/592 (21%), Positives = 233/592 (39%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ + I D YD L R F + R Sbjct: 25 AWSPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCFGNEPR--- 81 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + + + G V H + + K+ + LR ++ ++ N ++ + Sbjct: 82 -DAMMPPLAG-------TVMHPVAHTGVRKLADKNALRLWM---------REHNDLW--V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 123 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV + Sbjct: 182 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G + M +++ L G T+ V +E+ +R + LP+ DG+V + Sbjct: 227 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 283 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 284 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 338 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 339 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 386 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 387 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 424 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 425 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 472 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 473 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 524 >gi|300950021|ref|ZP_07163971.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 116-1] gi|300955364|ref|ZP_07167743.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 175-1] gi|301644314|ref|ZP_07244316.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 146-1] gi|300317736|gb|EFJ67520.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 175-1] gi|300450635|gb|EFK14255.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 116-1] gi|301077352|gb|EFK92158.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 146-1] Length = 561 Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 127/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 25 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 84 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 233 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 282 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 337 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 385 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 423 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 424 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 472 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 524 >gi|331649461|ref|ZP_08350547.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli M605] gi|331041959|gb|EGI14103.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli M605] Length = 562 Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 127/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 85 MIPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV + Sbjct: 183 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 227 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G + M +++ L G T+ V +E+ +R + LP+ DG+V + Sbjct: 228 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 284 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 285 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVM 339 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 340 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 387 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 388 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 425 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 426 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 473 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 474 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|293463971|ref|ZP_06664385.1| DNA ligase B [Escherichia coli B088] gi|291321603|gb|EFE61039.1| DNA ligase B [Escherichia coli B088] Length = 562 Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 127/591 (21%), Positives = 235/591 (39%), Gaps = 108/591 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 85 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 234 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 283 Query: 305 K-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 + E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 284 RGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVML 340 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--E 420 + + G V R DI GD++LV AG+ IP++ D++ E Sbjct: 341 DDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAE 388 Query: 421 RHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R P + F S S V C Q + RL S+ Sbjct: 389 RTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQ 426 Query: 480 AFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 ++G+G+ ++ + FS + + +++N G Sbjct: 427 VLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQ 474 Query: 538 LYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 475 LWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|331644366|ref|ZP_08345495.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli H736] gi|331655280|ref|ZP_08356279.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli M718] gi|331036660|gb|EGI08886.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli H736] gi|331047295|gb|EGI19373.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli M718] Length = 562 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 127/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 85 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 234 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 283 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 284 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 338 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 339 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 386 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 387 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 424 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 425 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 472 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 473 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|218556210|ref|YP_002389123.1| NAD-dependent DNA ligase LigB [Escherichia coli IAI1] gi|226737616|sp|B7M4D2|LIGB_ECO8A RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|218362978|emb|CAR00615.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1] Length = 560 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 127/591 (21%), Positives = 235/591 (39%), Gaps = 108/591 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 83 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 232 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 281 Query: 305 K-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 + E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 282 RGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVML 338 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--E 420 + + G V R DI GD++LV AG+ IP++ D++ E Sbjct: 339 DDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAE 386 Query: 421 RHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R P + F S S V C Q + RL S+ Sbjct: 387 RTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQ 424 Query: 480 AFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 ++G+G+ ++ + FS + + +++N G Sbjct: 425 VLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQ 472 Query: 538 LYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 473 LWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|330909708|gb|EGH38222.1| DNA ligase , LigB [Escherichia coli AA86] Length = 560 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 127/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MIPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV + Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G + M +++ L G T+ V +E+ +R + LP+ DG+V + Sbjct: 226 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVR 282 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVM 337 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|262045607|ref|ZP_06018626.1| NAD-dependent DNA ligase adenylation domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037033|gb|EEW38285.1| NAD-dependent DNA ligase adenylation domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 564 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 128/625 (20%), Positives = 250/625 (40%), Gaps = 114/625 (18%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+E S L Q+I + Y++ + D YD L R FP +D Sbjct: 34 RGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPEDD----- 88 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ H + + K+ + + + +++ W ++PK+D Sbjct: 89 -----DLPPPTGDARHPVAHTGVRKLADEDSVARWMKNKSDLW-----------IQPKVD 132 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ Y +G+ V A RGDG GE +A R IP + +V++ + + + ++GE+++ + Sbjct: 133 GVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGELADSV-LQGELFLRR 191 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 + + + A G N R +G++ R + L+ F+ + G Sbjct: 192 DGHV----QQQAGG----MNARAKVAGLMMRADAAAALSQLDVFIWA-------WPDGPS 236 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEM-----KSIRSTLPYDIDGLVYKVDEFS 310 +M ++ + L G + + + VS ++ + RS LP+ DG++ + Sbjct: 237 DMRRRQKLL---AQAGFKYSGQYTHPVSRIEQVAQWRQRWYRSPLPFVSDGVIVREG--- 290 Query: 311 LQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 ++ R SP W+ + K+ ++ I GR+G L VA LE + Sbjct: 291 --REPPGRVWSPGKGEWLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEAQRLDDKR 348 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH-PD 424 + + + + LD I VGD++ + AG+ IP+V ++ ERH P Sbjct: 349 VQRVNVGSVSRWQMLD-----------IGVGDQLQISLAGQGIPRVDAVVWRTAERHKPT 397 Query: 425 AQPFSFPSF-CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P F + C P+ CS Q L RL S+ A ++ Sbjct: 398 PPPAKFNALTCYFA--------TPE---------------CSEQFLSRLIWLSSKSALDV 434 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+G + L + ++P IF+ + +++ + G +L+ + Sbjct: 435 DGVG-ENLWRVIQQQNPM------THIFSW---LALTVEQLQAVPGISAARGQHLWHQFD 484 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 R R++ ++GI +A+ L +N+ + + A + W +L P Sbjct: 485 LVRKRPFIRWVLAMGIPVPQGALAQ------LESENW----HLLAAKSEAQWRTL---PG 531 Query: 604 VGDIIAQAIVEFYQNPRNICAVEAL 628 VG+I A+ +V F +P + + L Sbjct: 532 VGEIRARQLVAFLHHPDVVALAQWL 556 >gi|317050124|ref|YP_004117772.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b] gi|316951741|gb|ADU71216.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b] Length = 589 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 119/549 (21%), Positives = 213/549 (38%), Gaps = 88/549 (16%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF-PDL-ARSEDPNGP 74 A +E++ L ++ + DD YY+ + D++YD+L +R H F PD A + P Sbjct: 30 AGQEIAQLTTQLRHWDDAYYRQGLNPVSDADYDSLSQRLQQWQHCFTPDQSAYAAQPT-- 87 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 G + H + + K+ D R + + Q K D ++PK+ Sbjct: 88 ---TDGSTH-------HPVAHTGVRKL---RDKRAVMEWM----QGKAD----LWVQPKV 126 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG IT+ Y +G RGDG GE+ A IP IP+ ++ E++ ++GE+++ Sbjct: 127 DGVAITLVYRQGHLASMLSRGDGWRGEEWRAKASLIPAIPQQIATTQDEVV-LQGELFLQ 185 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 D D G K N R +G + R + T + L F+ + Sbjct: 186 MTDHQQAQD-----GGK---NARAQVAGAMMRRDDTPLLAQLGVFIWAWPDGPVALS--- 234 Query: 255 YEMLQKMRCLGFPVN-NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 E L ++ GF + + N + S+ + + + LP+ DG+V + + +++ Sbjct: 235 -ERLAQLSRWGFGLTARWSERVNNEDEVASWRD--RWFQGKLPFVTDGIV--IHQSPVRR 289 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 + W + K+ + S+ + + IGRTG + V L PV + + + Sbjct: 290 GRDWQPGQGEWSAAWKYQPAEVSSEVRSVAFNIGRTGKIAVVLNLIPVQLDDKTVRRVNI 349 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNER-HPDAQPFSF 430 + + L D+ GD+V + AG+ IP+V +I V +R +PDA Sbjct: 350 GSLRRWREL-----------DVIAGDQVTLALAGQGIPRVERVIWRVAQRDYPDA----- 393 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P++ T C AQ L RL + +I G+ + Sbjct: 394 ----------------PQSDDFNQLSCLTFSPPCRAQFLSRLSWLSEKSVLDISGIQRST 437 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 S I L + +I + G ++ N+ R L Sbjct: 438 WQRLLDS----------GTISHLFSWLALTPEQIAQVAGISPARAQQIWHRFNQTRQQPL 487 Query: 551 ERFIFSLGI 559 R++ +LG+ Sbjct: 488 RRWVMALGL 496 >gi|162139527|ref|YP_218649.2| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224585537|ref|YP_002639336.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|166226375|sp|Q57I94|LIGB_SALCH RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|254809146|sp|C0Q1X9|LIGB_SALPC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|224470065|gb|ACN47895.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322716720|gb|EFZ08291.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 561 Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 130/639 (20%), Positives = 239/639 (37%), Gaps = 114/639 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G N + V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A ++G+G+ ++ F IF+ ++ +I N GF + Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + N R R+I ++ I A + S + + ++ W L Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 P G+ A ++++ NP+ L + P G Sbjct: 525 ---PATGERRAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 560 >gi|293417108|ref|ZP_06659735.1| DNA ligase [Escherichia coli B185] gi|291431139|gb|EFF04132.1| DNA ligase [Escherichia coli B185] Length = 562 Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 127/590 (21%), Positives = 233/590 (39%), Gaps = 100/590 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 85 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R +D L FV ++ Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 234 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 287 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 288 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 344 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 345 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 392 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 393 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 430 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 431 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 478 Query: 542 INKRRNISLERFIFSLGIR----HVGAEIARSLAKYYLSYQNFAQEINNI 587 N+ R R++ ++GI + A RS ++ +S + F Q++ I Sbjct: 479 FNQARKQPFTRWVMAMGIPLTRVALNASDERSWSQLLVSTEQFWQQLPGI 528 >gi|157149264|ref|YP_001456583.1| NAD-dependent DNA ligase LigB [Citrobacter koseri ATCC BAA-895] gi|157086469|gb|ABV16147.1| hypothetical protein CKO_05104 [Citrobacter koseri ATCC BAA-895] Length = 576 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 127/625 (20%), Positives = 247/625 (39%), Gaps = 125/625 (20%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +A E++ L+Q+++ +D Y+Q + DS YD L + F Sbjct: 41 WSPARANDEIARLQQQLAQWNDSYWQQGVSAVDDSVYDQLSAQLVQWQRCF--------- 91 Query: 72 NGPLNKIGGEMNLSLF-----KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 GG+ L + H +P + K+ + + +++++ + W Sbjct: 92 -------GGDTGAELAPPVSGSLPHPVPHTGVRKLADKQAVQQWMRKRSDLW-------- 136 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 ++PK+DG +T+ Y G+ V A RG+G GED + +R IP +P+ + Sbjct: 137 ---VQPKVDGVAVTLVYRDGRLVSAISRGNGLKGEDWTQKVRLIPAVPQSTKGALANST- 192 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246 ++GE+++ ++ + +M + N R+ +G++ R N T + L+ F+ Sbjct: 193 LQGEIFLLHDNH--IQRQMGGM------NARSKVAGMMMRQNNTSSLQSLSVFIWA---- 240 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST-----LPYDIDG 301 + G M +++R L G A + V ++++ +R+ LP+ DG Sbjct: 241 ---WPDGPATMPERLRQLS---GAGFGFAQQYSQPVKSADDVERVRTAWWTTGLPFVTDG 294 Query: 302 LVYKVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 +V + K+ R P W+++ K+ + + +G++G ++ VA L Sbjct: 295 VVVRTG-----KEPEARHWMPGQGDWLVAWKYPPVAKVAEVTGVQFAVGKSGKISVVASL 349 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417 PV + ++ +K ++ G V R DI GD +LV AG+ IP++ ++ Sbjct: 350 APVML-----------DDKRVKRVNV-GSVRRWEEWDIAPGDHILVSLAGQGIPRIDKVV 397 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFV 476 RD G A C C Q + RL Sbjct: 398 WRSTQ--------------------RDKPAPPGNRYNALTCFYATEVCQEQFIARLVWLG 437 Query: 477 SRDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 S++A ++G+G+ ++ + FS L + Q +T GF Sbjct: 438 SKEALEVDGMGEAGWRVLHQAHRFEHIFS------WLALTQEQLQATP------GFSKEK 485 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 L+ N R+ R++ ++GI L + L N + ++A + Sbjct: 486 SKQLWHQFNLVRHRPFIRWVMAMGI---------PLTQGALK-ANGDRSWGQLLARTAEY 535 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNP 619 W L P G+ A+ ++++ NP Sbjct: 536 WQQL---PTTGEGRARRVIQWRDNP 557 >gi|306816005|ref|ZP_07450143.1| NAD-dependent DNA ligase LigB [Escherichia coli NC101] gi|305850401|gb|EFM50858.1| NAD-dependent DNA ligase LigB [Escherichia coli NC101] Length = 560 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 125/592 (21%), Positives = 233/592 (39%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR--- 80 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + + + G V H + + K+ + LR ++ ++ N ++ + Sbjct: 81 -DVMMPPLAG-------TVMHPVAHTGVRKLADKNALRLWM---------REHNDLW--V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV + Sbjct: 181 IFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA-------W 225 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G + M +++ L G T+ V +E+ +R + LP+ DG+V + Sbjct: 226 PDGPHLMTDRLKDLA---TAGFTLTQTYTRAVKNTDEVAHVRNEWWKAKLPFVTDGVVVR 282 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVM 337 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 472 QLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|170018123|ref|YP_001723077.1| NAD-dependent DNA ligase LigB [Escherichia coli ATCC 8739] gi|253771511|ref|YP_003034342.1| NAD-dependent DNA ligase LigB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163575|ref|YP_003046683.1| NAD-dependent DNA ligase LigB [Escherichia coli B str. REL606] gi|312972067|ref|ZP_07786241.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli 1827-70] gi|189046590|sp|B1IYV3|LIGB_ECOLC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|169753051|gb|ACA75750.1| DNA ligase (NAD(+)) [Escherichia coli ATCC 8739] gi|242379171|emb|CAQ33973.1| DNA ligase [Escherichia coli BL21(DE3)] gi|253322555|gb|ACT27157.1| DNA ligase (NAD(+)) [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975476|gb|ACT41147.1| NAD-dependent DNA ligase LigB [Escherichia coli B str. REL606] gi|253979632|gb|ACT45302.1| NAD-dependent DNA ligase LigB [Escherichia coli BL21(DE3)] gi|310334444|gb|EFQ00649.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli 1827-70] gi|323959895|gb|EGB55543.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli H489] gi|323971289|gb|EGB66534.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli TA007] Length = 560 Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 126/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 83 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 232 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 281 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 282 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 336 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 337 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 384 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL + Sbjct: 385 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGA 422 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 423 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 470 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 471 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|89110365|ref|AP_004145.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. W3110] gi|90111628|ref|NP_418104.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. MG1655] gi|170083154|ref|YP_001732474.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. DH10B] gi|238902738|ref|YP_002928534.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952] gi|401583|sp|P25772|LIGB_ECOLI RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|226737617|sp|B1X980|LIGB_ECODH RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|259494925|sp|C4ZXN9|LIGB_ECOBW RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|85676396|dbj|BAE77646.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr. W3110] gi|87082305|gb|AAC76671.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. MG1655] gi|169890989|gb|ACB04696.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. DH10B] gi|238860823|gb|ACR62821.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952] gi|260447334|gb|ACX37756.1| DNA ligase (NAD(+)) [Escherichia coli DH1] gi|309704049|emb|CBJ03395.1| putative DNA ligase [Escherichia coli ETEC H10407] gi|315138229|dbj|BAJ45388.1| NAD-dependent DNA ligase LigB [Escherichia coli DH1] gi|332345636|gb|AEE58970.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 560 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 126/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 83 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 232 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 281 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 282 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 336 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 337 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 384 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL + Sbjct: 385 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGA 422 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 423 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 470 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 471 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|283787721|ref|YP_003367586.1| DNA ligase [Citrobacter rodentium ICC168] gi|282951175|emb|CBG90867.1| putative DNA ligase [Citrobacter rodentium ICC168] Length = 560 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 125/552 (22%), Positives = 214/552 (38%), Gaps = 86/552 (15%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +A++E+S L Q+I+ DD Y++ K I D YD L+ R F + Sbjct: 24 WSSARAQEEISRLRQQIARWDDDYWKKGKSAIEDGVYDQLRTRLGDWQRCFG----GDAT 79 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 L IGG V H + ++K+ + L++++ +DD ++ Sbjct: 80 PALLPAIGG-------TVAHPVAHTGVKKLTDKRALQQWMA-------GRDD----LWVQ 121 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PK+DG +T+ Y G+ A RGDG GED +A ++ I +P+ ++ + + ++GE+ Sbjct: 122 PKVDGVAVTLVYRNGRLTRAISRGDGLKGEDWTAKVQQIAAVPQTVTGGLANSV-LQGEI 180 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA 251 + ++ + +G K N R +G+L R T F+ + A Sbjct: 181 FWPQDRHIQQK-----MGGK---NARAKVAGLLMRRETTSEIASQGIFIWAWPDGPQSMA 232 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + ++ Q L V+ A S++ S LP+ DG+V + Sbjct: 233 EKVTQLSQAGFTLTERFTLAVKNAQEVERARSHWWS-----SGLPFVTDGVVVRTG---- 283 Query: 312 QKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 K+ G R P W+ + K+ + I +G++G + VA L PV + + Sbjct: 284 -KEPGARYWLPGQGNWLAAWKYPSVAQVAEVTAIRFMVGKSGKIAAVATLMPVMLDDKRV 342 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 L G V R DI GD++L+ AG+ IP+ +D +V +P Sbjct: 343 QRVNL------------GSVRRWQEWDIAPGDQILISLAGQGIPR-IDKVVWRGVDRTKP 389 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 P + A AC Q + RL SR +IEG G Sbjct: 390 V------------------PPKDRFNALTCFYATDACQEQFISRLAWVGSRGVLDIEGTG 431 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + + F+ TL++ Q T GF L+ N R Sbjct: 432 EAGWRALHQHHH--FAHIFSWLGLTLEQIQLTP--------GFTKARGEKLWHQFNLARK 481 Query: 548 ISLERFIFSLGI 559 +R++ ++GI Sbjct: 482 KPFKRWLLAMGI 493 >gi|166226376|sp|A8ARN4|LIGB_CITK8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 560 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 127/625 (20%), Positives = 247/625 (39%), Gaps = 125/625 (20%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 S +A E++ L+Q+++ +D Y+Q + DS YD L + F Sbjct: 25 WSPARANDEIARLQQQLAQWNDSYWQQGVSAVDDSVYDQLSAQLVQWQRCF--------- 75 Query: 72 NGPLNKIGGEMNLSLF-----KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 GG+ L + H +P + K+ + + +++++ + W Sbjct: 76 -------GGDTGAELAPPVSGSLPHPVPHTGVRKLADKQAVQQWMRKRSDLW-------- 120 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 ++PK+DG +T+ Y G+ V A RG+G GED + +R IP +P+ + Sbjct: 121 ---VQPKVDGVAVTLVYRDGRLVSAISRGNGLKGEDWTQKVRLIPAVPQSTKGALANST- 176 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKT 246 ++GE+++ ++ + +M + N R+ +G++ R N T + L+ F+ Sbjct: 177 LQGEIFLLHDNH--IQRQMGGM------NARSKVAGMMMRQNNTSSLQSLSVFIWA---- 224 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST-----LPYDIDG 301 + G M +++R L G A + V ++++ +R+ LP+ DG Sbjct: 225 ---WPDGPATMPERLRQLS---GAGFGFAQQYSQPVKSADDVERVRTAWWTTGLPFVTDG 278 Query: 302 LVYKVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 +V + K+ R P W+++ K+ + + +G++G ++ VA L Sbjct: 279 VVVRTG-----KEPEARHWMPGQGDWLVAWKYPPVAKVAEVTGVQFAVGKSGKISVVASL 333 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417 PV + ++ +K ++ G V R DI GD +LV AG+ IP++ ++ Sbjct: 334 APVML-----------DDKRVKRVNV-GSVRRWEEWDIAPGDHILVSLAGQGIPRIDKVV 381 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFV 476 RD G A C C Q + RL Sbjct: 382 WRSTQ--------------------RDKPAPPGNRYNALTCFYATEVCQEQFIARLVWLG 421 Query: 477 SRDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 S++A ++G+G+ ++ + FS L + Q +T GF Sbjct: 422 SKEALEVDGMGEAGWRVLHQAHRFEHIFS------WLALTQEQLQATP------GFSKEK 469 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 L+ N R+ R++ ++GI L + L N + ++A + Sbjct: 470 SKQLWHQFNLVRHRPFIRWVMAMGI---------PLTQGALK-ANGDRSWGQLLARTAEY 519 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNP 619 W L P G+ A+ ++++ NP Sbjct: 520 WQQL---PTTGEGRARRVIQWRDNP 541 >gi|300919785|ref|ZP_07136260.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 115-1] gi|300413138|gb|EFJ96448.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 115-1] Length = 561 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 126/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 25 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 84 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 233 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 282 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 337 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 385 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL + Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGA 423 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 424 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 472 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 524 >gi|206576543|ref|YP_002235985.1| NAD(+)-dependent DNA ligase LigB [Klebsiella pneumoniae 342] gi|257096557|sp|B5XTF0|LIGB_KLEP3 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|206565601|gb|ACI07377.1| NAD(+)-dependent DNA ligase LigB [Klebsiella pneumoniae 342] Length = 558 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 133/622 (21%), Positives = 246/622 (39%), Gaps = 108/622 (17%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+E+S L Q+I + Y++ + D YD L R FP +D P Sbjct: 28 RGRQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLAQWRQCFPGTTPEDDDLPP- 86 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFTLEPKI 134 + V H+ +RK + W K N ++PK+ Sbjct: 87 -----PTGDARHPVAHT-------------GVRKLADEVSVAHWMK---NKTDLWIQPKV 125 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +T+ Y +G V A RGDG GE +A R IP + +V + + + ++GE+++ Sbjct: 126 DGVAVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPALAKVTTGELANSV-LQGELFLR 184 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 ++ + + A G N R +G++ R + L+ F+ + G Sbjct: 185 RDGHV----QQQAGG----MNARAKVAGLMMRADAAAALSQLDVFIWA-------WPDGP 229 Query: 255 YEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +M ++ + L GF + T V+ + + + RS LP+ DG++ + Sbjct: 230 SDMRRRQQLLTQAGFKYSGQYTHPVTRVEQVAQWRQ-RWYRSPLPFVSDGVIVREG---- 284 Query: 312 QKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++ RA SP W+ + K+ + I GR+G L VA+LEP + + Sbjct: 285 -REPPGRAWSPGKGEWLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKRV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQ 426 + + + LD I VGD++ + AG+ IP++ ++ ERH + Sbjct: 344 QRVNVGSVARWQALD-----------IGVGDQLQISLAGQGIPRIDAVVWRTAERH---K 389 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P K A CS Q L RL S+ A +++G+ Sbjct: 390 P------------------TPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDGV 431 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + L + ++P IF+ + +++ + G +L+ + R Sbjct: 432 G-EHLWRAIQQQNPM------THIFSW---LALTVEQLQAVPGISAARGQHLWHQFDLVR 481 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 R++ ++G+ +A+ L +N+ + + A + W +L P VG+ Sbjct: 482 KRPFIRWVLAMGLPVPQGALAQ------LESENW----HLLAAKSEAQWRAL---PGVGE 528 Query: 607 IIAQAIVEFYQNPRNICAVEAL 628 I A+ +V F +P + + L Sbjct: 529 IRARQLVAFLHHPDVVALAQWL 550 >gi|194435653|ref|ZP_03067756.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli 101-1] gi|194425196|gb|EDX41180.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli 101-1] Length = 562 Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 126/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 85 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 234 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 283 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 284 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 338 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 339 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 386 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL + Sbjct: 387 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGA 424 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 425 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 472 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 473 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|16767024|ref|NP_462639.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|81853648|sp|Q8ZL42|LIGB_SALTY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|16422307|gb|AAL22598.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|312914765|dbj|BAJ38739.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 561 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 120/564 (21%), Positives = 214/564 (37%), Gaps = 107/564 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 + PLN ++ V H+ +RK + R W + Sbjct: 84 VSPPLN------GTTMHPVAHT-------------GVRKLVDRQAVEQWMRGRSE---LW 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++G Sbjct: 122 VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + R N R+ +G+L R + L F+ Sbjct: 181 EIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA------- 225 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + G M +++ L G N + V +E++ R S LP+ DG+V Sbjct: 226 WPDGPANMPERLSQL---AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVI 282 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 ++ + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 283 RMAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILD 340 Query: 365 GALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 341 DKRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRER 388 Query: 423 -----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 PD+ S F C Q + RL S Sbjct: 389 SKPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLIWLGS 423 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 R A ++G+G+ ++ + FS TL ++ +I N GF Sbjct: 424 RSALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKS 471 Query: 536 TNLYDSINKRRNISLERFIFSLGI 559 ++ N R R+I ++ I Sbjct: 472 EQIWRQFNLARRQPFTRWIMAMDI 495 >gi|168464952|ref|ZP_02698844.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632322|gb|EDX50806.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 561 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 130/641 (20%), Positives = 240/641 (37%), Gaps = 118/641 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + +V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 A ++G+G+ ++ + FS TL ++ +I N GF Sbjct: 425 SALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKSE 472 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 ++ N R R+I ++ I A + S + + ++ W Sbjct: 473 QIWRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWR 522 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 L P G+ A ++++ NP+ L + P G Sbjct: 523 QL---PATGERRAGRVIDWRNNPQIKTLSRWLAAQHIPGFG 560 >gi|183597041|ref|ZP_02958534.1| hypothetical protein PROSTU_00276 [Providencia stuartii ATCC 25827] gi|188023700|gb|EDU61740.1| hypothetical protein PROSTU_00276 [Providencia stuartii ATCC 25827] Length = 570 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 110/454 (24%), Positives = 195/454 (42%), Gaps = 74/454 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 LS ++ +KE L +++ + Y + D YD L + + + ++ Sbjct: 43 TLSQDELKKESQKLGEQLQQWNRLYRLSGNSPVTDETYDQL-------LNTWQQWQKCQN 95 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 +G L I + V H I L+K+ N D+ K+I W L Sbjct: 96 LSGQLPPI--HLPPHSRTVKHPIVHTGLKKL-NEVDIGKWIDTREEVW-----------L 141 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG I++ Y++GK V RG+G G + IP IP+ L + P++I ++GE Sbjct: 142 QPKVDGVAISLVYQQGKLVSMISRGNGIEGLEWRDKADFIPAIPKQLPTSQPQLI-LQGE 200 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASG-ILRRLNPTDITRYLNFFV----HGLGK 245 ++ D + + + G N RN +G ++R+ P ++ F+ G+GK Sbjct: 201 LFWRLKD----HRQQASGG----VNARNQVAGWLMRKSKPVTPEANIDVFIWAWPEGVGK 252 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIV----SYYNEMKSIRSTLPYDIDG 301 E + +++ LGFP+ T V SYY + +P+ DG Sbjct: 253 AEEQW--------RQLANLGFPLTQQYSHKVTTMAQVKKWQSYYYQ-----QPMPFATDG 299 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +V K F + + W ++ K + ++++ D+ ++GRTG ++ VA +EPV Sbjct: 300 IVLK--SFPTPRVAAWQVNHNSWSVAWKHPYTRIASKVTDLHFRVGRTGAVSVVAEIEPV 357 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VN 419 + ++ Y+ L + K +D+ VGD + V AG IPK+ +I + Sbjct: 358 ELDSKKVSRL------YLGSLKSWQK-----KDLLVGDTIQVALAGHGIPKLESVIWRLQ 406 Query: 420 ER-HPDAQPF------SFPSFCPICQSRVVRDLN 446 +R +PD F S P C+ + V LN Sbjct: 407 QRTYPDLSQFKQFHALSCFVMTPQCEQQFVARLN 440 >gi|254038848|ref|ZP_04872900.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|290497|gb|AAA62000.1| f562 [Escherichia coli] gi|226838813|gb|EEH70840.1| conserved hypothetical protein [Escherichia sp. 1_1_43] Length = 562 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 126/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 85 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 234 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 283 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 284 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 338 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 339 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 386 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL + Sbjct: 387 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGA 424 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 425 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 472 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 473 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|218697368|ref|YP_002405035.1| NAD-dependent DNA ligase LigB [Escherichia coli 55989] gi|300923458|ref|ZP_07139498.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 182-1] gi|301325330|ref|ZP_07218837.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 78-1] gi|307314268|ref|ZP_07593876.1| DNA ligase (NAD(+)) [Escherichia coli W] gi|254809144|sp|B7L771|LIGB_ECO55 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|218354100|emb|CAV00658.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989] gi|300420285|gb|EFK03596.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 182-1] gi|300847857|gb|EFK75617.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 78-1] gi|306906091|gb|EFN36610.1| DNA ligase (NAD(+)) [Escherichia coli W] gi|315062935|gb|ADT77262.1| DNA ligase, NAD(+)-dependent [Escherichia coli W] gi|323376472|gb|ADX48740.1| DNA ligase (NAD(+)) [Escherichia coli KO11] gi|324116014|gb|EGC09940.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli E1167] Length = 560 Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 126/587 (21%), Positives = 231/587 (39%), Gaps = 100/587 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 83 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 232 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 285 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 286 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 342 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 343 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 390 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 391 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 428 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 429 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 476 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 477 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|167995212|ref|ZP_02576302.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205327077|gb|EDZ13841.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248887|emb|CBG26741.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996002|gb|ACY90887.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160276|emb|CBW19799.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|321226792|gb|EFX51842.1| DNA ligase, LigB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132100|gb|ADX19530.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990588|gb|AEF09571.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 561 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 119/563 (21%), Positives = 216/563 (38%), Gaps = 105/563 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G N + V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLIWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 A ++G+G+ ++ + FS TL ++ +I N GF Sbjct: 425 SALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKSE 472 Query: 537 NLYDSINKRRNISLERFIFSLGI 559 ++ N R R+I ++ I Sbjct: 473 QIWRQFNLARRQPFTRWIMAMDI 495 >gi|301028426|ref|ZP_07191672.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 196-1] gi|299878537|gb|EFI86748.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 196-1] Length = 560 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 125/592 (21%), Positives = 229/592 (38%), Gaps = 110/592 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMVDKNALSLWMRERSDLWG----------- 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 + + L+++ GF + T+ V +E+ +R + LP+ DG+V + Sbjct: 233 S----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVR 282 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVM 337 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471 Query: 537 NLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 472 QLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|166226367|sp|Q3YW09|LIGB_SHISS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 560 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 133/623 (21%), Positives = 239/623 (38%), Gaps = 121/623 (19%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 83 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R +D L FV ++ Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + L+++ GF + R I NE ++ LP+ DG+V + Sbjct: 232 MT----DRLKELATAGFTLTQRYTRAVKNADEIARVRNEW--WKAKLPFVTDGVVVRA-- 283 Query: 309 FSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 K+ R P W+++ K+ + I +G++G ++ VA L PV + Sbjct: 284 ---AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDD 340 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERH 422 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 341 KKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERT 388 Query: 423 PDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P + F S S V C Q + RL S+ Sbjct: 389 KPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVL 426 Query: 482 NIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 ++G+G+ ++ + FS + + +++N G L+ Sbjct: 427 GLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLW 474 Query: 540 DSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 N R R++ ++GI + A RS ++ S + F Q Sbjct: 475 HQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQ------------- 521 Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618 R+P G A+ ++E+ +N Sbjct: 522 ----RLPGTGSGRARQVIEWKEN 540 >gi|300815113|ref|ZP_07095338.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 107-1] gi|300532005|gb|EFK53067.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 107-1] Length = 560 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 126/587 (21%), Positives = 231/587 (39%), Gaps = 100/587 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 83 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 232 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 285 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 286 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 342 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 343 VQRVNI------------GSVRRWEEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 390 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 391 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 428 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 429 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 476 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 477 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|323939593|gb|EGB35799.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli E482] Length = 562 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 124/593 (20%), Positives = 231/593 (38%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 85 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N +G++ R + +D L FV ++ Sbjct: 182 EIFLQREGH--IQQQMGGI------NAHAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 234 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 283 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 284 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 338 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII--- 417 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 339 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 386 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 P SF S S V C Q + RL + Sbjct: 387 AERTKPTPPENSFNSLTCYFASDV----------------------CQEQFISRLVWLGA 424 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 425 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 472 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 473 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|323934808|gb|EGB31190.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli E1520] Length = 560 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 127/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 83 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + +A V +E+ +R + LP+ DG+V Sbjct: 232 MS----DRLKELATAGFTLTQRYTRA------VKNADEVARVRNDWWKAELPFVTDGVVV 281 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 282 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 336 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 337 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 384 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 385 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 422 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 423 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 470 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 471 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|74314119|ref|YP_312538.1| NAD-dependent DNA ligase LigB [Shigella sonnei Ss046] gi|73857596|gb|AAZ90303.1| putative enzyme [Shigella sonnei Ss046] Length = 562 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 133/623 (21%), Positives = 239/623 (38%), Gaps = 121/623 (19%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 85 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R +D L FV ++ Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + L+++ GF + R I NE ++ LP+ DG+V + Sbjct: 234 MT----DRLKELATAGFTLTQRYTRAVKNADEIARVRNEW--WKAKLPFVTDGVVVRA-- 285 Query: 309 FSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 K+ R P W+++ K+ + I +G++G ++ VA L PV + Sbjct: 286 ---AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDD 342 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERH 422 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 343 KKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERT 390 Query: 423 PDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P + F S S V C Q + RL S+ Sbjct: 391 KPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVL 428 Query: 482 NIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 ++G+G+ ++ + FS + + +++N G L+ Sbjct: 429 GLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLW 476 Query: 540 DSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 N R R++ ++GI + A RS ++ S + F Q Sbjct: 477 HQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQ------------- 523 Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618 R+P G A+ ++E+ +N Sbjct: 524 ----RLPGTGSGRARQVIEWKEN 542 >gi|198244266|ref|YP_002217699.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|226737621|sp|B5FM71|LIGB_SALDC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|197938782|gb|ACH76115.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326625484|gb|EGE31829.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 561 Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 130/639 (20%), Positives = 239/639 (37%), Gaps = 114/639 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ A+G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLAVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A ++G+G+ ++ F IF+ ++ +I N GF + Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + N R R+I ++ I A + S + + ++ W L Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 P G+ A ++++ NP+ L + P G Sbjct: 525 ---PATGERRAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 560 >gi|171855259|sp|A7ZTJ9|LIGB_ECO24 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 560 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 126/587 (21%), Positives = 231/587 (39%), Gaps = 100/587 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 83 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 232 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 285 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 286 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 342 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 343 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 390 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 391 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 428 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 429 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHR 476 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 477 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|168235353|ref|ZP_02660411.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734322|ref|YP_002116682.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|226737627|sp|B4TZZ8|LIGB_SALSV RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|194709824|gb|ACF89045.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291581|gb|EDY30933.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 561 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 130/635 (20%), Positives = 242/635 (38%), Gaps = 118/635 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYTLAVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A ++G+G+ ++ F IF+ ++ +I N GF + Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + N R S R+I ++ I A + S + + ++ W L Sbjct: 475 WRQFNLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 P G+ A ++++ NP+ ++AL + +S Sbjct: 525 ---PATGERRAGRVIDWRDNPQ----IKALSRWLS 552 >gi|300822417|ref|ZP_07102557.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 119-7] gi|309797611|ref|ZP_07691999.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 145-7] gi|300525064|gb|EFK46133.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 119-7] gi|308118798|gb|EFO56060.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 145-7] Length = 561 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 126/587 (21%), Positives = 231/587 (39%), Gaps = 100/587 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 25 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 84 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 233 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 286 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 287 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 343 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 344 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 391 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 392 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 429 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 430 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHR 477 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 478 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 524 >gi|300927922|ref|ZP_07143481.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 187-1] gi|300464014|gb|EFK27507.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 187-1] Length = 561 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 125/593 (21%), Positives = 234/593 (39%), Gaps = 112/593 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 25 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 84 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 122 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 232 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 233 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 282 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 283 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 337 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 385 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + R+ + Sbjct: 386 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRVVWLGA 423 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 424 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 471 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 472 AQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 524 >gi|191167813|ref|ZP_03029619.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B7A] gi|190902156|gb|EDV61899.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B7A] Length = 562 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 126/587 (21%), Positives = 231/587 (39%), Gaps = 100/587 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 85 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 123 VQPKVDGVAVTMVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 234 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 287 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 288 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 344 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 345 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 392 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 393 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 430 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 431 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHR 478 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 479 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|193063789|ref|ZP_03044876.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E22] gi|192930504|gb|EDV83111.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E22] Length = 577 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 124/586 (21%), Positives = 227/586 (38%), Gaps = 98/586 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 41 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 99 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 100 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 138 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 139 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 197 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 198 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 249 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 250 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 303 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 304 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 361 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 408 Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P + F S S V C Q + RL S+ ++ Sbjct: 409 PPENRFNSLTCYFASEV----------------------CQEQFISRLVWLGSKQVLGLD 446 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 447 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 494 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 495 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 540 >gi|204928646|ref|ZP_03219845.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322079|gb|EDZ07277.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 561 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 127/639 (19%), Positives = 236/639 (36%), Gaps = 114/639 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN H + + K+ + + + +++ W + Sbjct: 84 VSPPLNGT----------TRHPVAHTGVRKLVDRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLAVKNASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVMLDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A ++G+G+ ++ F IF+ ++ +I N GF + Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + N R R+I ++ I A + S + + ++ W L Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 P G+ A ++++ NP+ L + P G Sbjct: 525 ---PSTGERRAGRVIDWRDNPQIKALSRWLAAQHIPGFG 560 >gi|32396688|gb|AAP49300.1| NAD-dependent DNA ligase [Bacillus circulans] Length = 121 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA+G LR+L+P +R+L+ FV+ L E+ L ++ LGF VN Sbjct: 1 ANPRNAAAGSLRQLDPKIAASRHLDLFVYSLANAEELGIDSHSAALDYLQTLGFKVNPER 60 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 R+ ++ + +E RS LPYDIDG+V KVD F Q+ +G A+SPRW I++KF Sbjct: 61 RRCANIDEVIRFVSEWHEKRSHLPYDIDGIVIKVDSFEQQESVGATAKSPRWAIAYKF 118 >gi|157158891|ref|YP_001465128.1| NAD-dependent DNA ligase LigB [Escherichia coli E24377A] gi|331670488|ref|ZP_08371327.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA271] gi|331679739|ref|ZP_08380409.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli H591] gi|157080921|gb|ABV20629.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E24377A] gi|331062550|gb|EGI34470.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli TA271] gi|331072911|gb|EGI44236.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B) [Escherichia coli H591] Length = 562 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 126/587 (21%), Positives = 231/587 (39%), Gaps = 100/587 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 85 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 234 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 287 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 288 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 344 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 345 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 392 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 393 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 430 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 431 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHR 478 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 479 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|260857958|ref|YP_003231849.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O26:H11 str. 11368] gi|260870377|ref|YP_003236779.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O111:H- str. 11128] gi|257756607|dbj|BAI28109.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O26:H11 str. 11368] gi|257766733|dbj|BAI38228.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O111:H- str. 11128] Length = 560 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 124/586 (21%), Positives = 227/586 (38%), Gaps = 98/586 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391 Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P + F S S V C Q + RL S+ ++ Sbjct: 392 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 429 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 430 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 477 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 478 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|260846568|ref|YP_003224346.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O103:H2 str. 12009] gi|257761715|dbj|BAI33212.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O103:H2 str. 12009] Length = 560 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 124/586 (21%), Positives = 227/586 (38%), Gaps = 98/586 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391 Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P + F S S V C Q + RL S+ ++ Sbjct: 392 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 429 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 430 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 477 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 478 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|161616820|ref|YP_001590785.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189046593|sp|A9MVP4|LIGB_SALPB RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|161366184|gb|ABX69952.1| hypothetical protein SPAB_04639 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 561 Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 125/622 (20%), Positives = 235/622 (37%), Gaps = 114/622 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN ++ V H+ + K+ + + + +++ W + Sbjct: 84 VSPPLN------GTTMHPVAHT----GVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLAVKNASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A ++G+G+ ++ F IF+ ++ +I N GF + Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + N R R+I ++ I A + S + + ++ W L Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524 Query: 599 IRVPLVGDIIAQAIVEFYQNPR 620 P G+ A ++++ NP+ Sbjct: 525 ---PATGERRAGRVIDWRDNPQ 543 >gi|194430072|ref|ZP_03062577.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B171] gi|194411899|gb|EDX28216.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B171] Length = 577 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 124/586 (21%), Positives = 227/586 (38%), Gaps = 98/586 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 41 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 99 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 100 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 138 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 139 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 197 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 198 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 249 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 250 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 303 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 304 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 361 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 408 Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P + F S S V C Q + RL S+ ++ Sbjct: 409 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 446 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 447 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 494 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 495 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 540 >gi|238910220|ref|ZP_04654057.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 561 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 124/621 (19%), Positives = 233/621 (37%), Gaps = 112/621 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLAVKNASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH--- 422 + + + K DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNIGSVKRWKAW-----------DIAPGDQILVSLAGQGIPRLDEVVWRSRERSK 390 Query: 423 ---PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 PD+ S F C Q + RL SR Sbjct: 391 PVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSRS 425 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A ++G+G+ ++ F IF+ ++ +I N GF ++ Sbjct: 426 ALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQIW 475 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 N R R+I ++ I A + S + + ++ W L Sbjct: 476 RQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL- 524 Query: 600 RVPLVGDIIAQAIVEFYQNPR 620 P G+ A ++++ NP+ Sbjct: 525 --PATGERRAGRVIDWRNNPQ 543 >gi|188492181|ref|ZP_02999451.1| putative DNA ligase domain protein [Escherichia coli 53638] gi|188487380|gb|EDU62483.1| putative DNA ligase domain protein [Escherichia coli 53638] Length = 562 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 126/587 (21%), Positives = 230/587 (39%), Gaps = 100/587 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 85 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 122 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 123 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R +D L FV ++ Sbjct: 182 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 234 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 287 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 288 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 344 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 345 VQQVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 392 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 393 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 430 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 431 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 478 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 479 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|194449070|ref|YP_002047770.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|226737624|sp|B4T9Z1|LIGB_SALHS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|194407374|gb|ACF67593.1| NAD-dependent DNA ligase domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 561 Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 125/622 (20%), Positives = 236/622 (37%), Gaps = 114/622 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN ++ V H+ + K+ + + + +++ W + Sbjct: 84 VSPPLN------GTTMHPVAHT----GVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLLYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + +V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A ++G+G+ ++ F IF+ ++ +I N GF + Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + N R R+I ++ I A + S + + ++ W L Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524 Query: 599 IRVPLVGDIIAQAIVEFYQNPR 620 P G+ A ++++ NP+ Sbjct: 525 ---PATGERRAGRVIDWRDNPQ 543 >gi|288932991|ref|YP_003437050.1| DNA ligase (NAD(+)) [Klebsiella variicola At-22] gi|288887720|gb|ADC56038.1| DNA ligase (NAD(+)) [Klebsiella variicola At-22] Length = 558 Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 132/622 (21%), Positives = 245/622 (39%), Gaps = 108/622 (17%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+E+S L Q+I + Y++ + D YD L R FP +D P Sbjct: 28 RGRQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLTQWRQCFPGATPEDDDLPP- 86 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI-YRFWQKKDDNSIFFTLEPKI 134 + V H+ +RK + W K N ++PK+ Sbjct: 87 -----PTGDARHPVAHT-------------GVRKLADEVSVAHWMK---NKTDLWIQPKV 125 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS 194 DG +T+ Y +G V A RGDG GE +A R IP + +V + + + ++GE+++ Sbjct: 126 DGVAVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPALAKVTTGELANSV-LQGELFLR 184 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQ 254 ++ + + A G N R +G++ R + L+ F+ + G Sbjct: 185 RDGHV----QQQAGG----MNARAKVAGLMMRADAAAALSQLDVFIWA-------WPDGP 229 Query: 255 YEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +M ++ + L GF + T V+ + + + RS LP+ DG++ + Sbjct: 230 SDMRRRQQLLTQAGFKYSGQYTHPVTRVEQVAQWRQ-RWYRSPLPFVSDGVIVREG---- 284 Query: 312 QKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 ++ RA SP W+ + K+ + I GR+G L VA+LEP + + Sbjct: 285 -REPPGRAWSPGKGEWLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKRV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQ 426 + + + LD I VGD++ + AG+ IP++ ++ ERH + Sbjct: 344 QRVNVGSVARWQALD-----------IGVGDQLQISLAGQGIPRIDAVVWRTAERH---K 389 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P K A CS Q L RL S+ A +++G+ Sbjct: 390 P------------------TPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDGV 431 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + L + ++P IF+ + +++ + G +L+ + R Sbjct: 432 G-ENLWRAIQQQNPM------THIFSW---LALTVEQLQAVPGISAARGQHLWHQFDLVR 481 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 R++ ++G+ + + L +N+ + + A + W +L P VG+ Sbjct: 482 KRPFIRWVLAMGLPVPQGALTQ------LESENW----HLLAAKSEAQWRAL---PGVGE 528 Query: 607 IIAQAIVEFYQNPRNICAVEAL 628 I A+ +V F +P + + L Sbjct: 529 IRARQLVAFLHHPDVVALAQWL 550 >gi|168241918|ref|ZP_02666850.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205339075|gb|EDZ25839.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 561 Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 128/639 (20%), Positives = 240/639 (37%), Gaps = 114/639 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN ++ V H+ + K+ + + + +++ W + Sbjct: 84 VSPPLN------GTTMHPVAHT----GVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + +V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASETCQEQFISRLVWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A ++G+G+ ++ F IF+ ++ +I N GF + Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + N R R+I ++ I A + S + + ++ W L Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 P G+ A ++++ NP+ L + P G Sbjct: 525 ---PATGERRAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 560 >gi|327395796|dbj|BAK13218.1| DNA ligase YicF [Pantoea ananatis AJ13355] Length = 589 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 107/456 (23%), Positives = 192/456 (42%), Gaps = 65/456 (14%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A + +A E++ L+Q++ D Y+Q + ++ D++YD+L++R + F A Sbjct: 25 AWTSARAVSEIAHLQQQLRQWDKAYFQQGRSLVSDADYDSLQQRLNHWQRCFTQAADEYV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-QKKDDNSIFFT 129 P P E V H+ ++ +R R +W Q ++D Sbjct: 85 PALP------EDGTQWHPVAHT----------GVKKVRD--KRALGYWMQARND----LW 122 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PKIDG +++ Y +GK V RGDG GE A R IP IP V+ I+ ++G Sbjct: 123 VQPKIDGVAVSLIYRQGKLVSLISRGDGLHGEQWLAKARHIPAIPSVIDSQQGSIV-LQG 181 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + + + GR N R +G + + + L F+ Sbjct: 182 ELFLK----MTGHQQAVDGGR----NARARVAGAMMSQADSPLLAQLGIFIWSWPDGPAS 233 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L ++ GF + + Q + + E + + LP+ DG+V Sbjct: 234 MP----ERLARLSSWGFDLASHWTQPVQDEEDAASWRE-RWFHAPLPFVTDGIVVHQAAR 288 Query: 310 SLQK--QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 K Q GE W I+ K+ + S+ + +D IGRTG + V ++PV + Sbjct: 289 PAGKYWQPGEG----EWAIAWKYQPPEVSSEVRSVDFSIGRTGKVAVVLNIQPVQLDDKT 344 Query: 368 ITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDII--VNERH-- 422 + + G + R +D+ GD+V V AG+ IP++ +I V +R Sbjct: 345 VRRVNI------------GSLKRWREQDVIAGDQVTVSLAGQGIPRLERVIWRVAQRDYP 392 Query: 423 --PDAQPFSFPS---FCPICQSRVVRDLNPKTGKLV 453 P ++ F+ S P C +++ L+ + K V Sbjct: 393 EPPGSEHFTHLSCYTLTPDCHRQLLARLSWLSQKFV 428 >gi|324111541|gb|EGC05522.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia fergusonii B253] Length = 561 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 94/408 (23%), Positives = 172/408 (42%), Gaps = 60/408 (14%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A +E+S L+ ++ D Y++ K + D YD L R F D A SE P+ Sbjct: 29 RANEEISRLQLQLKQWSDTYWKEGKSKVEDHVYDQLSARLAQWQRCFGDNADSETMMPPI 88 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 + V H + + K+ + L++++ W ++PK+D Sbjct: 89 SGT----------VMHPVAHTGVRKLADKNALQQWMRARRDVW-----------VQPKVD 127 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ Y GK A RG+G GED + +R IP++P+ +S + ++GE+Y+ + Sbjct: 128 GVAVTLVYRDGKLNQAISRGNGLKGEDWTQRLRLIPSVPQNVSGPLSNST-LQGEIYLQR 186 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQY 255 + +M + N R+ +G++ R TD L F+ + Sbjct: 187 EGH--IQQQMGGM------NARSKVAGMMMRHGNTDTLNSLGVFIWAWPDGPQSMP---- 234 Query: 256 EMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV----DEFS 310 E LQ + GF + R+ N+ + +E ++ LP+ DG+V +V D Sbjct: 235 ERLQILTAAGFILTQQYTREVNSAREVEQVRSEW--WKTKLPFVTDGVVVRVGKEPDSRH 292 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q G+ W+ + K+ + I +G++G + VA L P+ + + Sbjct: 293 WQPGQGD------WLAAWKYPPIAQVAEVNAIHFTVGKSGKIAVVASLAPIKLDDKRVQR 346 Query: 371 ATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417 + G V R DI GD++LV AG+ IP++ +++ Sbjct: 347 VNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDNVV 382 >gi|291619488|ref|YP_003522230.1| YicF [Pantoea ananatis LMG 20103] gi|291154518|gb|ADD79102.1| YicF [Pantoea ananatis LMG 20103] Length = 568 Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 108/455 (23%), Positives = 192/455 (42%), Gaps = 63/455 (13%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A + +A E++ L+Q++ D Y+Q + ++ D++YD+L++R + F A Sbjct: 4 AWTSARAVNEIAHLQQQLRQWDKAYFQQGRSLVSDADYDSLQQRLNHWQRCFTQAADEYV 63 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFW-QKKDDNSIFFT 129 P P E V H+ ++ +R R +W Q ++D Sbjct: 64 PALP------EDGTQWHPVAHT----------GVKKVRD--KRALGYWMQARND----LW 101 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PKIDG +++ Y +GK V RGDG GE A R IP IP V+ I+ ++G Sbjct: 102 VQPKIDGVAVSLIYRQGKLVSLISRGDGLHGEQWLAKARHIPAIPSVIDSQQGSIV-LQG 160 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + + + GR N R +G + + + L F+ Sbjct: 161 ELFLK----MTGHQQAVDGGR----NARARVAGAMMSQADSPLLAQLGIFIWSWPDGPAS 212 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 E L ++ GF + + Q + + E + + LP+ DG+V Sbjct: 213 MP----ERLARLSSWGFDLASHWTQPVQDEEDAASWRE-RWFHAPLPFVTDGIVVHQAAR 267 Query: 310 SLQK--QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 K Q GE W I+ K+ + S+ + +D IGRTG + V ++PV + Sbjct: 268 PAGKYWQPGEG----EWAIAWKYQPPEVSSEVRSVDFSIGRTGKVAVVLNIQPVQLDDKT 323 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH--- 422 + + S K R +D+ GD+V V AG+ IP++ +I V +R Sbjct: 324 VRRVNI----------GSLKRWR-EQDVIAGDQVTVSLAGQGIPRLERVIWRVAQRDYPE 372 Query: 423 -PDAQPFSFPS---FCPICQSRVVRDLNPKTGKLV 453 P ++ F+ S P C +++ L+ + K V Sbjct: 373 PPGSEHFTHLSCYTLTPDCHRQLLARLSWLSQKFV 407 >gi|194445315|ref|YP_002042988.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|226737625|sp|B4SXE9|LIGB_SALNS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|194403978|gb|ACF64200.1| NAD-dependent DNA ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 561 Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 119/564 (21%), Positives = 214/564 (37%), Gaps = 107/564 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 + PLN ++ V H+ +RK R + W + Sbjct: 84 VSPPLN------GTTMHPVAHT-------------GVRKLADRQVVEQWMRGRSE---LW 121 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++G Sbjct: 122 VQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGALANAV-LQG 180 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + R N R+ +G+L R + L F+ Sbjct: 181 EIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA------- 225 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + G M +++ L G + +V +E++ R S LP+ DG+V Sbjct: 226 WPDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVI 282 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 ++ + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 283 RMAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILD 340 Query: 365 GALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 341 DKRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRER 388 Query: 423 -----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 PD+ S F C Q + RL S Sbjct: 389 SKPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLIWLGS 423 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 R A ++G+G+ ++ + FS TL ++ +I N GF Sbjct: 424 RSALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKS 471 Query: 536 TNLYDSINKRRNISLERFIFSLGI 559 ++ N R R+I ++ I Sbjct: 472 EQIWRQFNLARRQPFTRWIMAMDI 495 >gi|200387460|ref|ZP_03214072.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604558|gb|EDZ03103.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 561 Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 118/563 (20%), Positives = 216/563 (38%), Gaps = 105/563 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + +V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLIWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 A ++G+G+ ++ + FS TL ++ +I N GF Sbjct: 425 SALGLDGMGEASWRALHQTHRFEHIFS------WLTL------TSAQIANTPGFAKGKSE 472 Query: 537 NLYDSINKRRNISLERFIFSLGI 559 ++ N R R+I ++ I Sbjct: 473 QIWRQFNLARRQPFTRWIMAMDI 495 >gi|30065077|ref|NP_839248.1| NAD-dependent DNA ligase LigB [Shigella flexneri 2a str. 2457T] gi|56480394|ref|NP_709426.2| NAD-dependent DNA ligase LigB [Shigella flexneri 2a str. 301] gi|81839371|sp|Q83PM9|LIGB_SHIFL RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|30043338|gb|AAP19059.1| putative enzyme [Shigella flexneri 2a str. 2457T] gi|56383945|gb|AAN45133.2| putative enzyme [Shigella flexneri 2a str. 301] gi|332751117|gb|EGJ81520.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri 2747-71] Length = 560 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 124/585 (21%), Positives = 228/585 (38%), Gaps = 96/585 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I + + +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV ++ Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 232 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P ++R NP T + C Q + RL S+ ++G Sbjct: 392 PP----------ENR----FNPLTCYFASD-------VCQEQFISRLVWLGSKQVLGLDG 430 Query: 486 LGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+ ++ + FS + + +++N G L+ N Sbjct: 431 IGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFN 478 Query: 544 KRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 RN R++ ++GI + A RS ++ S + F Q++ Sbjct: 479 LARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|32482046|gb|AAP49290.1| NAD-dependent DNA ligase [Bacillus sp. IMG-1] Length = 121 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 1/118 (0%) Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA G R+L P +R L+ FV+GL + E L ++ LGF VN Sbjct: 1 ANPRNAAGGSFRQLEPKVAASRQLDLFVYGLADAEALGIASHSEALDYLQALGFKVNPER 60 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 R+ ++++ +E R LPY+IDG+V KVD F+ Q+ LG A+SPRW I++KF Sbjct: 61 RRCANIDEVIAFISEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKF 118 >gi|281603010|gb|ADA75994.1| DNA ligase B [Shigella flexneri 2002017] Length = 562 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 124/585 (21%), Positives = 228/585 (38%), Gaps = 96/585 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 85 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I + + +S + ++GE Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGPLANST-LQGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R +D L FV ++ Sbjct: 183 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLM 234 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 235 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 288 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 289 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 346 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 393 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P ++R NP T + C Q + RL S+ ++G Sbjct: 394 PP----------ENR----FNPLTCYFASD-------VCQEQFISRLVWLGSKQVLGLDG 432 Query: 486 LGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+ ++ + FS + + +++N G L+ N Sbjct: 433 IGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFN 480 Query: 544 KRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 RN R++ ++GI + A RS ++ S + F Q++ Sbjct: 481 LARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|187775663|ref|ZP_02992667.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4196] gi|188024760|ref|ZP_02997228.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4113] gi|189010103|ref|ZP_02804810.2| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4076] gi|189401811|ref|ZP_03006485.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4401] gi|189402714|ref|ZP_03006814.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4486] gi|189403713|ref|ZP_03007195.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4501] gi|189404723|ref|ZP_02810531.2| NAD-dependent DNA ligase adenylation domain [Escherichia coli O157:H7 str. EC869] gi|189405711|ref|ZP_03007918.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC508] gi|208809321|ref|ZP_03251658.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4206] gi|208814147|ref|ZP_03255476.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4045] gi|208820627|ref|ZP_03260947.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4042] gi|209397991|ref|YP_002273126.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4115] gi|217325818|ref|ZP_03441902.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. TW14588] gi|187771517|gb|EDU35361.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4196] gi|188016999|gb|EDU55121.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4113] gi|189002376|gb|EDU71362.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4076] gi|189358909|gb|EDU77328.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4401] gi|189364410|gb|EDU82829.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4486] gi|189369721|gb|EDU88137.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4501] gi|189374635|gb|EDU93051.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli O157:H7 str. EC869] gi|189378779|gb|EDU97195.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC508] gi|208729122|gb|EDZ78723.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4206] gi|208735424|gb|EDZ84111.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4045] gi|208740750|gb|EDZ88432.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4042] gi|209159391|gb|ACI36824.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4115] gi|217322039|gb|EEC30463.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str. TW14588] Length = 577 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 123/586 (20%), Positives = 227/586 (38%), Gaps = 98/586 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+ L+Q+I DD Y++ K + D YD L R F R + Sbjct: 41 AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 99 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 100 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 138 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 139 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 197 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 198 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 249 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 250 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 303 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ ++ I +G++G ++ VA L PV + + Sbjct: 304 PESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 361 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 408 Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P + F S S V C Q + RL S+ ++ Sbjct: 409 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 446 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 447 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 494 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 495 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 540 >gi|12518406|gb|AAG58791.1|AE005592_2 putative enzyme [Escherichia coli O157:H7 str. EDL933] Length = 562 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 123/586 (20%), Positives = 227/586 (38%), Gaps = 98/586 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+ L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 85 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 183 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 234 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 235 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRXAKE 288 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ ++ I +G++G ++ VA L PV + + Sbjct: 289 PESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 346 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 393 Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P + F S S V C Q + RL S+ ++ Sbjct: 394 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 431 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 432 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 479 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 480 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|32307200|gb|AAP79093.1| NAD-dependent DNA ligase [Bacillus catenulatus] Length = 121 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Query: 214 ANPRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNAA G R+L P +R L+ FV+GL E+ E L ++ LGF VN Sbjct: 1 ANPRNAAVGSFRQLEPKVAASRKLDLFVYGLANAEELGIASHSEALDYLQELGFKVNPER 60 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 R+ ++++ +E R LPY+IDG+V KVD F+ +++LG A+SPRW I++KF Sbjct: 61 RRCANIDEVIAFISEWHEKRPQLPYEIDGIVIKVDSFAQRRELGATAKSPRWAIAYKF 118 >gi|322612905|gb|EFY09857.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618970|gb|EFY15857.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625253|gb|EFY22080.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630079|gb|EFY26852.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634271|gb|EFY31006.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635828|gb|EFY32537.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642969|gb|EFY39547.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645038|gb|EFY41569.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649862|gb|EFY46285.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653069|gb|EFY49404.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661112|gb|EFY57340.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662399|gb|EFY58612.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667277|gb|EFY63443.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674346|gb|EFY70439.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678446|gb|EFY74507.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680952|gb|EFY76986.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687112|gb|EFY83085.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323198247|gb|EFZ83353.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200865|gb|EFZ85935.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206619|gb|EFZ91577.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210468|gb|EFZ95354.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216243|gb|EGA00971.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220466|gb|EGA04920.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225330|gb|EGA09564.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228444|gb|EGA12575.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234265|gb|EGA18353.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237250|gb|EGA21317.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244769|gb|EGA28773.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245856|gb|EGA29846.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250961|gb|EGA34837.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257291|gb|EGA40990.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262215|gb|EGA45776.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264574|gb|EGA48078.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268863|gb|EGA52321.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 561 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 127/639 (19%), Positives = 236/639 (36%), Gaps = 114/639 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN H + + K+ + + + +++ W + Sbjct: 84 VSPPLNGT----------TRHPVAHTGVRKLADRQAVEQWMRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYTLAVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A ++G+G+ ++ F IF+ ++ +I N GF + Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + N R R+I ++ I A + S + + ++ W L Sbjct: 475 WRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL 524 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 P G+ A ++++ NP+ L + P G Sbjct: 525 ---PSTGERRAGRVIDWRDNPQIKALSRWLAAQHIPGFG 560 >gi|161367494|ref|NP_290227.2| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EDL933] Length = 560 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 123/586 (20%), Positives = 227/586 (38%), Gaps = 98/586 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+ L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRXAKE 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ ++ I +G++G ++ VA L PV + + Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391 Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P + F S S V C Q + RL S+ ++ Sbjct: 392 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 429 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 430 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 477 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 478 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|226942521|ref|YP_002797594.1| NAD-dependent DNA ligase LigB [Azotobacter vinelandii DJ] gi|257096555|sp|C1DIC2|LIGB_AZOVD RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|226717448|gb|ACO76619.1| NAD-dependent DNA ligase [Azotobacter vinelandii DJ] Length = 560 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 124/546 (22%), Positives = 215/546 (39%), Gaps = 95/546 (17%) Query: 25 EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84 + +++YH D + + D YD + R FP A P PL G + Sbjct: 46 QWDVAYHRD-----GRSPVADELYDQARARLADWNRCFPGQA-DASPE-PLAGSAGPL-- 96 Query: 85 SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144 H +P L K+ + +R ++ W +PK+DG +T+ Y Sbjct: 97 -----LHPVPHTGLAKL-DEAAVRDWMATREDLWT-----------QPKVDGVAVTLEYA 139 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204 G+ A RGDG G+D +A +R +P +PR L+ I++ GE+Y L + + Sbjct: 140 DGRLRRAISRGDGRHGQDWTARVRRLPALPRQLAERRRLILQ--GELYWR----LPGHVQ 193 Query: 205 MIAVGRKPYANPRNAASGILRR--LNPTDITRYLNFFVHGLGKTSEIFAKGQYEM---LQ 259 A GR + R +G+L R L+ D G+G + G +M L Sbjct: 194 AEAGGR----SARARVAGLLARDTLDDGDAA--------GIGLFVWDWPNGPADMRARLD 241 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 + LGF + + E + R LP+ DG+V + ++ GER Sbjct: 242 GLERLGFAEARRYSRPVADFATARQWRE-RWYREPLPFASDGVVLRQG----RRPPGERW 296 Query: 320 RS--PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 R+ P W ++ K+ QA + + +IGR+G +TP L+PV + I L + Sbjct: 297 RAEPPHWAVAWKYPLAQALAEVRAVRFRIGRSGRITPQLELQPVRLDDRQIRRVALGSLR 356 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 + L D+R GD+V ++ AG+ IP+V ++ A+ + PS Sbjct: 357 RWREL-----------DVRPGDQVAIRLAGQSIPQVDAVVWRA----AERPALPS----- 396 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 +P ++ R G C Q L RL R ++ G+G+ + ++ Sbjct: 397 -------PDPAAHHALSCWRPLPG--CEEQFLARLDWLGGRRGLDLRGVGRGTWEALLEN 447 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 + L + ++ + GFG+ S + L + R ++ +L Sbjct: 448 ----------GRLDDLLGWLELDEARLAELPGFGERSASLLAERFRAARRRPFPMWLRAL 497 Query: 558 GIRHVG 563 G+ G Sbjct: 498 GLPPAG 503 >gi|38704188|ref|NP_312549.2| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. Sakai] gi|195936208|ref|ZP_03081590.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. EC4024] gi|254795602|ref|YP_003080439.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. TW14359] gi|261224170|ref|ZP_05938451.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. FRIK2000] gi|261254780|ref|ZP_05947313.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. FRIK966] gi|166226377|sp|Q8XD89|LIGB_ECO57 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|257096607|sp|B5YWE6|LIGB_ECO5E RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|254595002|gb|ACT74363.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. TW14359] gi|320639554|gb|EFX09162.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. G5101] gi|326337353|gb|EGD61188.1| DNA ligase , LigB [Escherichia coli O157:H7 str. 1044] Length = 560 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 123/586 (20%), Positives = 227/586 (38%), Gaps = 98/586 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+ L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ ++ I +G++G ++ VA L PV + + Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391 Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P + F S S V C Q + RL S+ ++ Sbjct: 392 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 429 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 430 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 477 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 478 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|13363997|dbj|BAB37945.1| putative enzyme [Escherichia coli O157:H7 str. Sakai] gi|209754570|gb|ACI75592.1| putative enzyme [Escherichia coli] gi|209754572|gb|ACI75593.1| putative enzyme [Escherichia coli] gi|209754576|gb|ACI75595.1| putative enzyme [Escherichia coli] Length = 562 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 123/586 (20%), Positives = 227/586 (38%), Gaps = 98/586 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+ L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 85 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 183 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 234 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 235 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 288 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ ++ I +G++G ++ VA L PV + + Sbjct: 289 PESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 346 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 393 Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P + F S S V C Q + RL S+ ++ Sbjct: 394 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 431 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 432 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 479 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 480 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|256021349|ref|ZP_05435214.1| NAD-dependent DNA ligase LigB [Shigella sp. D9] Length = 560 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 123/586 (20%), Positives = 226/586 (38%), Gaps = 98/586 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+ L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391 Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P + F S S V C Q + RL S+ ++ Sbjct: 392 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 429 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 430 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQF 477 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 478 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|326392616|ref|ZP_08213952.1| DNA ligase (NAD(+)) [Thermoanaerobacter ethanolicus JW 200] gi|325991342|gb|EGD49998.1| DNA ligase (NAD(+)) [Thermoanaerobacter ethanolicus JW 200] Length = 210 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 10/197 (5%) Query: 29 SYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 +YH+ YY +P I D EYD L R + +P+ + P+ P ++GGE Sbjct: 20 NYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEF---KTPDSPSQRVGGEPLKEFEP 76 Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 TH +P LSL ++ +LR F R+ ++ + + +E KIDG + + YE G F Sbjct: 77 FTHVVPMLSLANAFSEGELRDFDRRV-----REAVGDVEYVVELKIDGLSVELIYENGIF 131 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 + RGDG GE+V+ ++ I +IP L ++ + VRGEV++ + F LN+E + Sbjct: 132 TVGSTRGDGIVGENVTQNLKTIKSIPLRLKDDVSLV--VRGEVFMPRTSFEKLNEEREKI 189 Query: 209 GRKPYANPRNAASGILR 225 KP+ + S + Sbjct: 190 RGKPFCKSQKCCSRFFK 206 >gi|332282582|ref|ZP_08394995.1| NAD-dependent DNA ligase LigB [Shigella sp. D9] gi|323944100|gb|EGB40180.1| NAD-dependent DNA ligase adenylation domain-containing protein [Escherichia coli H120] gi|332104934|gb|EGJ08280.1| NAD-dependent DNA ligase LigB [Shigella sp. D9] Length = 562 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 123/586 (20%), Positives = 226/586 (38%), Gaps = 98/586 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+ L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 85 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 183 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 234 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 235 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 288 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 289 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 346 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 393 Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P + F S S V C Q + RL S+ ++ Sbjct: 394 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 431 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 432 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQF 479 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 480 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|168818429|ref|ZP_02830429.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344676|gb|EDZ31440.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088159|emb|CBY97921.1| DNA ligase Polydeoxyribonucleotide synthase [NAD+] [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 561 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 117/561 (20%), Positives = 214/561 (38%), Gaps = 101/561 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWMRGRSELW-----------I 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ +G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLAVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPAAQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH-- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 ----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD+ S F C Q + RL SR Sbjct: 390 KPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGSR 424 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A ++G+G+ ++ F IF+ ++ +I N GF + Sbjct: 425 SALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQI 474 Query: 539 YDSINKRRNISLERFIFSLGI 559 + N R R+I ++ I Sbjct: 475 WRQFNLARRQPFTRWIMAMDI 495 >gi|193070347|ref|ZP_03051289.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E110019] gi|192956286|gb|EDV86747.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E110019] Length = 577 Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 123/586 (20%), Positives = 226/586 (38%), Gaps = 98/586 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+ L+Q+I DD Y++ K + D YD L R F R + Sbjct: 41 AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 99 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 100 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 138 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 139 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 197 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 198 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 249 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 250 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 303 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 304 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 360 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 361 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 408 Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P + F S S V C Q + RL S+ ++ Sbjct: 409 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 446 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 447 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQF 494 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 495 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 540 >gi|291285018|ref|YP_003501836.1| DNA ligase B [Escherichia coli O55:H7 str. CB9615] gi|290764891|gb|ADD58852.1| DNA ligase B [Escherichia coli O55:H7 str. CB9615] gi|320644993|gb|EFX14023.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H- str. 493-89] gi|320650260|gb|EFX18749.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H- str. H 2687] gi|320655612|gb|EFX23540.1| NAD-dependent DNA ligase LigB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661346|gb|EFX28770.1| NAD-dependent DNA ligase LigB [Escherichia coli O55:H7 str. USDA 5905] gi|320666360|gb|EFX33359.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. LSU-61] Length = 560 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 123/586 (20%), Positives = 226/586 (38%), Gaps = 98/586 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+ L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 233 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 286 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 287 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 343 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 344 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 391 Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P + F S S V C Q + RL S+ ++ Sbjct: 392 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 429 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 430 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 477 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 478 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 523 >gi|209754568|gb|ACI75591.1| putative enzyme [Escherichia coli] gi|209754574|gb|ACI75594.1| putative enzyme [Escherichia coli] Length = 562 Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 123/586 (20%), Positives = 226/586 (38%), Gaps = 98/586 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+ L+Q+I DD Y++ K + D YD L R F R + Sbjct: 26 AWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 84 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 85 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 123 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 124 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 182 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 183 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 234 Query: 251 AKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VDE 308 + L+++ GF + R + NE ++ LP+ DG+V + E Sbjct: 235 T----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAKE 288 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + L +A W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 289 PESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKV 345 Query: 369 TNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDA 425 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 346 QRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPT 393 Query: 426 QPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P + F S S V C Q + RL S+ ++ Sbjct: 394 PPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLD 431 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 432 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHRF 479 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 480 NLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 525 >gi|310831452|ref|YP_003970095.1| putative NAD-dependent DNA ligase [Cafeteria roenbergensis virus BV-PW1] gi|309386636|gb|ADO67496.1| putative NAD-dependent DNA ligase [Cafeteria roenbergensis virus BV-PW1] Length = 651 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 167/739 (22%), Positives = 310/739 (41%), Gaps = 161/739 (21%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL-NKI 78 ++ LE+ + YY S PI+ D ++D L D + P + P+ NK+ Sbjct: 22 KIKELEKLLEQASKSYYNTSNPILTDDQFDIL---LDFLNKRNPKSTFLKQVGAPIKNKV 78 Query: 79 GGEMNL-SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + L S+ K+ P+ LEK W L+K+ Y L K+DG Sbjct: 79 ELDYYLGSMDKIKP--PSTKLEK-W----LKKYSAPYY--------------LSDKLDGI 117 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPE-------------I 184 + Y+ K + RG G D++ I+ + +P S N+ E + Sbjct: 118 SGLVVYQNNK-IKLFTRGTATEGMDITTLIKYL-NLP---SYNVVETKLKKLGLKGHKNL 172 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGIL--RRLNPTDITRYLNFFVHG 242 I +RGE+ +SK++F N E + N RN +G++ + P+ +++ L+F ++ Sbjct: 173 IALRGEIIMSKSNFSKHNKE--------FKNARNLVAGLVNSKHKKPS-LSQDLDFVLYQ 223 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + F E + ++ LGF ++ + ++S +K ++ Y++DG+ Sbjct: 224 VVDPVITFV----EQMDLIKELGFKNVYYQKEKELNYNVLSQI--LKQRKNNSDYEVDGI 277 Query: 303 VY---KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 + K+ + ++ K E A + + ++ F E + + ++ I ++G + P + Sbjct: 278 IVTNNKLHKLNIGKN-PEFAFAFKELVEETFKE----STVKHVEWNISKSGKIMPTVVIL 332 Query: 360 PVNIGGALITNATLHNEDYIK--GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 PV + G ++ T N Y+K GL G ++ + R+G+VIP +V Sbjct: 333 PVEMEGVTVSRVTAFNAKYVKENGLGP-------------GSKIQITRSGDVIPYIV--- 376 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTG----GLACSAQQLERLK 473 +V++ ++P+ K+ +G L S +Q R Sbjct: 377 ----------------------KVIKKVSPEFPKIDYKWTDSGVDIRTLDQSDEQQIR-- 412 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPA-FSIRIPADIF-----TLQRRQQTSTTKIENI 527 Q+ FFFK+ D F +++ +F T+++ + + Sbjct: 413 ----------------QIYFFFKTLDTKRFGLKLIVKMFENNFNTIEKILKMDKDDFIKL 456 Query: 528 LGFGDVSVTNLYDSIN--KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN 585 G D S TN Y+ + K N LE+ I L +G AK L + N+ N Sbjct: 457 DGVKDKSATNFYNELQRIKSTNFPLEKLI--LATNSLGDNFGSKKAK--LIFDNYPDIFN 512 Query: 586 NIIAHN---NDDW-LSLIRVPLVGDIIAQAIVEFYQN-PRNICAVEALLKEVSPSIGRHE 640 I N ++W L +P + A+ I+ + +NI +E K + +I + Sbjct: 513 KNIIKNEKIKNEWILKFKNIPGIEQKTAEQIINKWDVLQKNIKWLE---KYFTININKSS 569 Query: 641 KNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-----NP 694 K VS++ ++ K V TG K ++K +E +G VS +S+ TDI++V D NP Sbjct: 570 KQVSNKNLKYIKWVLTGFRDKELQNKIEE----MGGTVSNSVSKNTDIVVVKDSSVLNNP 625 Query: 695 GSKLEKAQQLGVKIMNEEQ 713 K+ KA+ LG+KI+ + + Sbjct: 626 TGKVLKAKDLGIKIIEKSK 644 >gi|48249475|gb|AAT40982.1| putative DNA ligase [Xenorhabdus nematophila] Length = 168 Score = 98.2 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 22/177 (12%) Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI+SLGIR VG A +L ++ + + D +LI V VG I+A Sbjct: 6 RFIYSLGIREVGETTAANLVSHFGTLEKLQAA----------DTEALIAVQDVGGIVASH 55 Query: 612 IVEFYQNPRNICAVEALLKEV--------SPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +V F+ P N ++ L+ + SP++G + K +V TG+L ++ R Sbjct: 56 VVNFFNEPHNQAVIDDLVNNIGIHWESAESPNLGE----IDGPFAGKTVVLTGSLNRLSR 111 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +A++ + LGA V+ +S+KTD++I G+ GSKL KA +LG+ +++E++ + LL++ Sbjct: 112 DEAKDKLAALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELGIPVIDEDEMIRLLRE 168 >gi|56415629|ref|YP_152704.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364556|ref|YP_002144193.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81821323|sp|Q5PC41|LIGB_SALPA RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|226737626|sp|B5BI22|LIGB_SALPK RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|56129886|gb|AAV79392.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096033|emb|CAR61620.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 561 Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 128/618 (20%), Positives = 236/618 (38%), Gaps = 106/618 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A +A +E++ L+Q+++ +D Y++ + DS YD L R S Sbjct: 24 AWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTP 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + PLN G M H + + K+ + + + +++ W + Sbjct: 84 VSPPLN--GTTM--------HPVAHTGVRKLADRQAVEQWVRGRSELW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++GE Sbjct: 123 QPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + R N R+ A+G+L R + L F+ + Sbjct: 182 IFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWA-------W 226 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 G M +++ L G + V +E++ R S LP+ DG+V + Sbjct: 227 PDGPANMPERLSQL---AKAGFSLTKKYSLAVKDASEVERARQSWLTSALPFVTDGVVIR 283 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 + + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 284 MAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIV--NERH 422 + + G V R DI GD++LV AG+ IP++ +++ ER Sbjct: 342 KRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERS 389 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P S N T +A C Q + RL SR A Sbjct: 390 KPVPPGSH--------------FNSLTCFYASA-------TCQEQFISRLVWLGSRSALG 428 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 ++G+G+ ++ F IF+ ++ +I N G ++ Sbjct: 429 LDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGVAKGKSEQIWRQF 478 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 R S R+I ++ I A + S + + ++ W L P Sbjct: 479 YLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL---P 525 Query: 603 LVGDIIAQAIVEFYQNPR 620 G+ A ++++ NP+ Sbjct: 526 ATGERRAGRVIDWRNNPQ 543 >gi|326633001|ref|YP_004306590.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage SPC35] gi|321272195|gb|ADW80087.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage SPC35] Length = 323 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 110/400 (27%), Positives = 174/400 (43%), Gaps = 86/400 (21%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 +++++ I + YYQ +I D EYD L +R FP L P G Sbjct: 1 MTNVKNFIKRCQEAYYQ-GMSLISDEEYDRLIKR-------FP-LEEEIGPKG------- 44 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + H SL+K++ Y K N + K+DG I+ Sbjct: 45 -------DIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAIS 85 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + Y G+FV A RG+G G DV++ +R + IP+ +S +P ++ GEV I+K Sbjct: 86 LLYINGEFVQALTRGNGILGNDVTSNVRLL-NIPKKISQKVP--TQITGEVLITKE---- 138 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 N RN ASG + + D FV +G+ IF + Sbjct: 139 ------------VENKRNFASGAINLKDSDD-------FVQRIGEGGLIF------VAYG 173 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNE----MKSIRSTLPY-DIDGLVYKVDEFSLQKQL 315 ++C V G+ +A ++ NE + ++RS + DG V ++++ + + Sbjct: 174 IQCSAESV--GITEA-YLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNNKFFRE 230 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +SPR + K E+ T L ++ G +G +TPV EPV I A+IT ATL+N Sbjct: 231 GWTNKSPRGAFAIKEDEEGEITTLTKVEWATGASGKITPVGYFEPVIIDDAVITKATLNN 290 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 DYI L D+ +G ++ V RAG VIPK+V+ Sbjct: 291 VDYINSL-----------DLEIGCQIRVIRAGGVIPKIVE 319 >gi|270700816|ref|ZP_06223057.1| DNA ligase [Haemophilus influenzae HK1212] gi|270315848|gb|EFA27948.1| DNA ligase [Haemophilus influenzae HK1212] Length = 152 Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 90/158 (56%), Gaps = 17/158 (10%) Query: 96 LSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF------FTLEPKIDGTMITIRYEKGKFV 149 LSL+ ++ + F+ RI +D I F EPK+DG ++I Y G+ Sbjct: 2 LSLDNAFSDAEFNAFVKRI-------EDRLILLPKPLTFCCEPKLDGLAVSILYVNGELT 54 Query: 150 YAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 AA RGDG +GED++A IR I +P ++L+ N P +EVRGEV++ F LN + Sbjct: 55 QAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGFERLNKYALEH 114 Query: 209 GRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLG 244 K +ANPRNAA+G LR+L+P +IT R L +G+G Sbjct: 115 NEKTFANPRNAAAGSLRQLDP-NITSKRPLVLNAYGIG 151 >gi|123440450|ref|YP_001004444.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166226365|sp|A1JHV9|LIGB_YERE8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|122087411|emb|CAL10192.1| putative DNA ligase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 565 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 101/427 (23%), Positives = 184/427 (43%), Gaps = 64/427 (14%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA--IAHAFPDLARSED 70 S E+ E+ LE+++ + Y+Q I D YD L+ + + PD + Sbjct: 31 SEERMSGEMHLLEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWRLCLGLPD----KT 86 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 N P+ G K+ H + L+K+ + L ++T W + Sbjct: 87 DNRPIPGNG--------KMLHPVAHTGLKKLKDEAALISWMTGRKNLW-----------V 127 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PKIDG +T+ Y+ GK RG+G G++ + I IP+ ++ + P ++ ++GE Sbjct: 128 QPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIA-SAPPLLTLQGE 186 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 V FL + A + AN R + +G L R + + + L F+ + Sbjct: 187 V------FLQMEGHQQA--QSGGANARASVAGALMRKSVSPLLAKLGIFIWA-------W 231 Query: 251 AKGQYEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 G M++K R L GFP+ + V+ + + + + LP+ DG+V + + Sbjct: 232 PDGPKSMVEKSRLLQEMGFPLTAHYSEPVISSSDVALWRD-RWFKMPLPFVTDGVVIRQE 290 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +A W ++ K+ Q T + DI +GRTG +T + ++ PV I Sbjct: 291 NVPAGRYW--QATPGNWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVIPVKI---- 344 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH--- 422 ++ +I+ ++ DI GD+V + AG+ IP++ +I V++R Sbjct: 345 -------DDKWIRRVNIGSIARWKQWDIVPGDQVTISLAGQGIPRLDKVIWRVSQRQEIV 397 Query: 423 -PDAQPF 428 PDA F Sbjct: 398 PPDADKF 404 >gi|213419664|ref|ZP_03352730.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 190 Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 17/193 (8%) Query: 531 GDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF-AQEINNIIA 589 G S N+ +++ K + + RF+++LGIR VG A LA Y+ + + A I+ Sbjct: 8 GPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATID---- 63 Query: 590 HNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSS 645 L +VP VG ++A + F+ N + LL E +P + + + + S Sbjct: 64 -------ELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INAQEIDS 115 Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 K +V TG+L ++ R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ+LG Sbjct: 116 PFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELG 175 Query: 706 VKIMNEEQFLFLL 718 + +++E + + LL Sbjct: 176 ITVIDEAEMIRLL 188 >gi|238789535|ref|ZP_04633319.1| DNA ligase B [Yersinia frederiksenii ATCC 33641] gi|238722288|gb|EEQ13944.1| DNA ligase B [Yersinia frederiksenii ATCC 33641] Length = 565 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 93/410 (22%), Positives = 178/410 (43%), Gaps = 60/410 (14%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI--AHAFPDLARSEDPNGPLNK 77 E++ L+Q++S D Y+Q ++ D+ YD L+ + PD K Sbjct: 38 EINLLDQQLSKWDIAYHQQGVSLLDDNVYDQLQDKLRGWRECRGLPD------------K 85 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + K H + L+K+ N L +++ W ++PK+DG Sbjct: 86 TNNRLIPGNGKRLHPVAHTGLKKLKNEMALTNWMSGRKNLW-----------VQPKVDGV 134 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y+ GK RG+G G+ I IP+ +++ P ++ ++GE+ Sbjct: 135 AVTLVYQAGKLTQLLSRGNGLKGQSWIDKAPFISAIPQYIAM-APPLLTLQGEL------ 187 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 FL + A + N R + +G L R + + + L F+ + G M Sbjct: 188 FLQMEGHQQA--QSGGVNARTSVAGALMRKSASPLLAKLGIFIWA-------WPDGPRNM 238 Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +++ ++ +GFP+ ++ T V + E R+ LP+ DG+V + +E + Sbjct: 239 VERTTLLQIMGFPLAAQYSKSVTSSKDVIQWRE-HWYRAPLPFVTDGVVIRQEEEPAGRY 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 R+ S W ++ K+ Q T + DI +GRTG +T V ++ PV I Sbjct: 298 W--RSASGNWSVAWKYPPIQQLTEIQDIHFTVGRTGKITVVLQVSPVKI----------- 344 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH 422 ++ +I+ ++ +I GD+V + AG+ IP++ ++ V++RH Sbjct: 345 DDKWIRRVNIGSMARWRQWNITSGDQVTIALAGQGIPRLDKVVWRVDQRH 394 >gi|159487072|ref|XP_001701559.1| predicted protein [Chlamydomonas reinhardtii] gi|158271500|gb|EDO97317.1| predicted protein [Chlamydomonas reinhardtii] Length = 623 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 119/244 (48%), Gaps = 30/244 (12%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 LE ++ H + Y+ + P I D+ YD LKRR +A +A +ED P+ + Sbjct: 4 LEAALTKHRELYFNQT-PEISDAAYDELKRRFRDLAARLRGVA-AEDVAFPVGAPVAAAS 61 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDD--NSIFFTLEPKIDGTMIT 140 +L KV H++P SL + + +++ ++ R + R Q + S + +EPK+DG + Sbjct: 62 -ALRKVKHTVPMTSLAAVNSRQEVEAWMGRTLARLAQLRQGAAGSWGWVVEPKVDGLAVR 120 Query: 141 IRYEKG-----------KFVYAALRGDGHSGEDVS-----ACIRAIP---TIP-----RV 176 + Y + + AA RGDG GEDV+ I+ +P T+P Sbjct: 121 VVYRRVAKGDGGGGAAYELQEAATRGDGEVGEDVTHNALHGGIQGLPLRFTMPPGAATSA 180 Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYL 236 + PE +EVRGEVY+ D +N E A G +AN RNAASG LR L+P + R Sbjct: 181 PTSAAPEWVEVRGEVYVRIADLQQVNKEAEAAGGSGFANARNAASGGLRLLDPAECRRRR 240 Query: 237 NFFV 240 FV Sbjct: 241 LSFV 244 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 30/217 (13%) Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGK-------LVAAHRCTGGLAC 464 +V+ ++ R P AQP++ P+ CP C V L P K VAA + G C Sbjct: 281 EVMRVLPELRPPGAQPWALPACCPACGGPV--RLQPAASKDAGEQLLCVAAEQ---GAGC 335 Query: 465 SAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI 524 SAQQ L HF ++ GL + + +P D +T R S Sbjct: 336 SAQQERMLLHF-AKVCLKGSGLAAGVMQALTAAG--LLEGGLP-DFYTRLDRATLSA--- 388 Query: 525 ENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 + GFG + + +++ + L I+ VG A++L ++Y E+ Sbjct: 389 --LPGFGAARAEAIAARVAASKSMRSAELLHGLNIKSVGETAAKALG---VAYPRLVPEL 443 Query: 585 NNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 W + +G +++Q + + + P N Sbjct: 444 QRA------SWQEIKAASGLGQVVSQNVETWMRQPAN 474 >gi|37524304|ref|NP_927648.1| NAD-dependent DNA ligase LigB [Photorhabdus luminescens subsp. laumondii TTO1] gi|81420505|sp|Q7N9N4|LIGB_PHOLL RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|36783727|emb|CAE12581.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 580 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 126/586 (21%), Positives = 231/586 (39%), Gaps = 110/586 (18%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S ++ ++E +SL Q++++ D Y Q I D YD L S+ P Sbjct: 35 SQDKLQRETNSLMQQMAHWDQLYRQKGISEIDDEVYDQLMSELTHWQFCLKQAPHSDFP- 93 Query: 73 GPLNKIGGEMNLSLF---KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + +F K+ H + L K+ + +++ +++ W Sbjct: 94 -----------VEVFPDNKLVHPVAHTGLSKLKDKQEINRWLHGRLPVW----------- 131 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 L+PKIDG +T+ Y+ GK V RG+G G + +A R IP IP+ + N P + ++G Sbjct: 132 LQPKIDGVAVTLVYQNGKLVSLISRGNGAEGVNWTAKSRYIPDIPQNIE-NAPPDLVLQG 190 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ K + +++ RN +G++ R + + + + F+ Sbjct: 191 ELFLHKEEH---RQQLLGSD-----GARNRVAGLMMRKDHSSELKQIGLFIWS------- 235 Query: 250 FAKGQYEMLQKMRCL---GFPV----NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 + G EM K+R L GFP+ ++ + + + +Y E + +T DG+ Sbjct: 236 WPDGPAEMESKLRKLADMGFPLALRYSHKIEEPEQVQKLRMHYFEQPMLFAT-----DGI 290 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 V K + Q R+ S W ++ K + T++ +++ IGRTG ++ V L+ V Sbjct: 291 VLKQEIEPKGNQW--RSGSNSWAVAWKHPLRHQVTQVREVNFTIGRTGKISVVLGLDKVK 348 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII--VN 419 + I+ + G V R + D+ GDRV + AG IPK+ ++ + Sbjct: 349 LDDRQISRVNI------------GSVRRWRQLDVLPGDRVTLTLAGHGIPKLAQVVWRIK 396 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSR 478 ER +D+ P + A C T + C Q RLK Sbjct: 397 ER---------------------QDIQPPDKQHYHALSCLTLTVGCEQQFNARLKWL--- 432 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 N++ G + +E + L S +I + G GD + Sbjct: 433 -GENLQMTGVSSGSWAMLTERKL--------VTDLTGWLALSAQQIAALPGIGDKRAQAI 483 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI 584 Y +K +N FS ++ +G L+ +Q Q++ Sbjct: 484 YSQFSKAKNQP-----FSYWMKGIGVPYMDKLSDNVYHWQQLEQKL 524 >gi|161505725|ref|YP_001572837.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189046592|sp|A9MKM6|LIGB_SALAR RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|160867072|gb|ABX23695.1| hypothetical protein SARI_03901 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 561 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 130/627 (20%), Positives = 238/627 (37%), Gaps = 106/627 (16%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +E++ L+Q+++ +D Y++ + DS YD L + S + PLN Sbjct: 32 EEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSAKLVQWQRCVGQDVSSTPVSPPLNGT 91 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 TH + + K+ + + + +++ FW ++PK+DG Sbjct: 92 ----------TTHPVAHTGVRKLADRQAVAQWMRGHSEFW-----------VQPKVDGVA 130 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 +T+ Y+ GK A RG+G GED + IR I +IP+ + + ++GE+ F Sbjct: 131 VTLVYQNGKLTRAISRGNGLQGEDWTQKIRQISSIPQTTRGALANAV-LQGEI------F 183 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEML 258 L L + R N R+ +G+L R T L F+ + G M Sbjct: 184 LQLKGHIQQ--RMGGMNARSKVAGMLMRQKNTSALNSLGIFIWA-------WPDGPANMT 234 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKV-DEFSLQ 312 +++ L G + +V +E++ R S LP+ DG+V ++ E S Q Sbjct: 235 ERLSQL---AKAGFSLTQKYSQMVKNASEVERARRSWLTSALPFVTDGVVIRMAKEPSSQ 291 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 R W+ + K+ ++ I +G++G ++ +A L PV + Sbjct: 292 YW---RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKISVIASLVPVML--------- 339 Query: 373 LHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 ++ +K ++ G V R DI GD++LV AG+ IP++ +++ R Sbjct: 340 --DDKRVKRVNI-GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRE--------- 387 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRC-TGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 R G + C C Q + RL SR A ++G+G+ Sbjct: 388 -----------RSKPVPPGNHFNSLTCFYASATCQEQFISRLVWLGSRAALGLDGMGEAS 436 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ F IF+ + +I N GF ++ N R Sbjct: 437 WRALHQTHR--FE-----HIFSW---LALTPAEIANTPGFAKGKSELIWRQFNLARRQPF 486 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R++ ++ I A + S + + ++ + W L P G+ A Sbjct: 487 SRWVMAMDIPLTQAALQASGDRSW----------EQLLMRTDQHWRQL---PATGERRAG 533 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG 637 + ++ NPR L + P G Sbjct: 534 RVSDWRDNPRIKALSRWLAAQHIPGFG 560 >gi|253987704|ref|YP_003039060.1| NAD-dependent DNA ligase LigB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779154|emb|CAQ82314.1| similar to putative dna ligase-like protein yicf of escherichia coli [Photorhabdus asymbiotica] Length = 578 Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 102/430 (23%), Positives = 185/430 (43%), Gaps = 72/430 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S ++ ++E SL Q+++ D Y Q I D YD L D I L ++ Sbjct: 31 AWSQDKLQRETKSLMQQMARWDQLYRQKGISEIDDEVYDQL--MADLIHW---QLCLKQE 85 Query: 71 PNGPLNKIGGEMNLSLF---KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 P+ + ++F K+ H + L K+ + ++ +++ W Sbjct: 86 PHS-------DFPATVFPDNKLVHPVAHTGLSKLKDEREINRWLHGRLPVW--------- 129 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 L+PKIDG +T+ Y++GK V RG+G G D +A I IP+ + N P + + Sbjct: 130 --LQPKIDGVAVTLVYQQGKLVSLISRGNGSEGVDWTAKSPYISEIPQEIE-NAPPYMVL 186 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 +GE+++ KN + + RN +G++ R + + + F+ Sbjct: 187 QGELFLHKNGHIQQSSGSDGA--------RNRVAGLMMRKEHSPELKQVGVFIWS----- 233 Query: 248 EIFAKGQYEM---LQKMRCLGFPV----NNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + G +M LQK+ +GFP+ ++ + + + +Y E +P+ D Sbjct: 234 --WPDGPVDMDGKLQKLANMGFPLALRYSHKIERPEQVQKLRMHYFE-----QPMPFATD 286 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V K + Q R+ S W ++ K + T++ ++ IGRTG ++ V L+ Sbjct: 287 GIVLKQEIEPKGNQW--RSGSNSWAVAWKHPLRHQVTQVREVSFTIGRTGKISVVLGLDK 344 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII-- 417 V + ++ + G V R + D+ GDRV + AG IPK+ ++ Sbjct: 345 VKLDDRQVSRVNI------------GSVRRWQQLDVLPGDRVTLTLAGHGIPKLAQVVWR 392 Query: 418 VNERHPDAQP 427 + ER D QP Sbjct: 393 IKERQ-DIQP 401 >gi|324019686|gb|EGB88905.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 117-3] Length = 450 Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 96/411 (23%), Positives = 175/411 (42%), Gaps = 57/411 (13%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITR-IYRFWQKKDDNSIFFT 129 PLN G M+ V H+ +RK + + W ++ + Sbjct: 83 MMPPLN--GAVMH----PVAHT-------------GVRKMVDKNALSLWMRERSD---LW 120 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 121 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 179 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 180 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 231 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 232 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 285 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 286 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 342 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417 + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 343 VQRVNI------------GSVRRWEEWDIAPGDQILVSLAGQGIPRIDDVV 381 >gi|115380146|ref|ZP_01467179.1| hypothetical protein STIAU_7665 [Stigmatella aurantiaca DW4/3-1] gi|115362851|gb|EAU62053.1| hypothetical protein STIAU_7665 [Stigmatella aurantiaca DW4/3-1] Length = 150 Score = 94.4 bits (233), Expect = 7e-17, Method: Composition-based stats. Identities = 51/127 (40%), Positives = 80/127 (62%), Gaps = 3/127 (2%) Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKL 652 D +L RV VG +AQ + F+Q P+N A++ALL V+P+ + N K + Sbjct: 21 DMEALTRVKDVGPTMAQVLHAFFQEPQNRAAIDALLAAGVTPA--PPQVNTGGPFAGKTV 78 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG + + R +A+E + + G VS +SRKTD ++ G++ GSKL+KAQ+LGV++++E+ Sbjct: 79 VLTGGMTGMSRDQAKEEIERRGGKVSGSVSRKTDFVVAGEDAGSKLKKAQELGVRVLDEQ 138 Query: 713 QFLFLLQ 719 FL LLQ Sbjct: 139 AFLKLLQ 145 >gi|290511785|ref|ZP_06551153.1| DNA ligase (NAD+) [Klebsiella sp. 1_1_55] gi|289775575|gb|EFD83575.1| DNA ligase (NAD+) [Klebsiella sp. 1_1_55] Length = 559 Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 126/622 (20%), Positives = 244/622 (39%), Gaps = 107/622 (17%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + R+E+S L Q+I + Y++ + D YD L R FP +D Sbjct: 28 RGRQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLAQWRQCFPGATPEDD----- 82 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++ H + + K+ + + ++ W ++PK+D Sbjct: 83 -----DLPPPTGDTRHPVAHTGVRKLADEASVAHWMKNKADLW-----------VQPKVD 126 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +T+ Y +G V A RGDG GE +A R IP + ++ + + + ++GE+++ + Sbjct: 127 GVAVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPALAKLTTGELANSV-LQGELFLRR 185 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 + + A G N R +G++ R + L+ F+ + G Sbjct: 186 EGHI----QQQAGG----MNARAKVAGLMMRADAAAAPLSQLDVFIWA-------WPDGP 230 Query: 255 YEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +M ++ + L GF + + T V+ + + + RS LP+ DG++ + Sbjct: 231 SDMRRRQQLLAQAGFGYSGQYTHSVTRVEQVAQWRQ-RWYRSPLPFVSDGVIVREGH--- 286 Query: 312 QKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 + R SP W+ + K+ + I GR+G L VA+LEP + + Sbjct: 287 --EPPGRVWSPGKGEWLAAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKRV 344 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQ 426 + + + L DI VGD++ + AG+ IP++ ++ ERH + Sbjct: 345 QRVNVGSVARWQAL-----------DIGVGDQLQISLAGQGIPRIDAVVWRTAERH---K 390 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P P K A CS Q L RL S+ A +++G+ Sbjct: 391 P------------------TPPAAKFNALTCYFATPECSEQFLSRLIWLSSKSALDVDGV 432 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G + L + ++P IF+ + +++ + G +L+ + R Sbjct: 433 G-EHLWRAIQQQNPM------THIFSW---LALTVEQLQAVPGISAARGQHLWHQFDLVR 482 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 R++ ++G+ +A+ L +N+ + + A + W +L P VG+ Sbjct: 483 KRPFIRWVLAMGLPVPQGALAQ------LESENW----HLLAAKSEAQWRAL---PGVGE 529 Query: 607 IIAQAIVEFYQNPRNICAVEAL 628 I A+ +V F +P + + L Sbjct: 530 IRARQLVAFLHHPDVVALAQWL 551 >gi|153948758|ref|YP_001399043.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis IP 31758] gi|166990677|sp|A7FCR5|LIGB_YERP3 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|152960253|gb|ABS47714.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758] Length = 567 Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 95/416 (22%), Positives = 181/416 (43%), Gaps = 62/416 (14%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDAL--KRRCDAIAHAFPDLARSEDPNGPLNK 77 E+++LEQ+++ Y+Q + D YD L K R PD S+ P+ Sbjct: 40 EINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQ----PIPG 95 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + H + L+K+ + L +++ W ++PK+DG Sbjct: 96 KG--------QFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDGV 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y GK V RG+G G++ + I IP+ ++ N P ++ ++GE+ Sbjct: 137 AVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQGEL------ 189 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 FL ++ A + N R+ +G L R +P+ + + F+ + G M Sbjct: 190 FLLMDGHQQA--KSGGVNARSTVAGALMRKSPSPLLAQVGVFIWA-------WPDGPTTM 240 Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +K ++ +GFP + H V + + ++ LP+ DG+V + +E + Sbjct: 241 KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEEEPAGRY 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +A +W ++ K+ Q + DI +GRTG T V + P+ I Sbjct: 300 W--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKI----------- 346 Query: 375 NEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQP 427 ++ +I+ ++ G V R + DI GD + + AG IP++ +++ V++R+ P Sbjct: 347 DDKWIRRVNI-GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAP 401 >gi|51594396|ref|YP_068587.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis IP 32953] gi|186893383|ref|YP_001870495.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis PB1/+] gi|81640832|sp|Q66GE4|LIGB_YERPS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|226737628|sp|B2JYM4|LIGB_YERPB RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|51587678|emb|CAH19278.1| putative DNA ligase [Yersinia pseudotuberculosis IP 32953] gi|186696409|gb|ACC87038.1| NAD-dependent DNA ligase adenylation [Yersinia pseudotuberculosis PB1/+] Length = 567 Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 92/415 (22%), Positives = 177/415 (42%), Gaps = 60/415 (14%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDAL--KRRCDAIAHAFPDLARSEDPNGPLNK 77 E+++LEQ+++ Y+Q + D YD L K R PD S+ P+ Sbjct: 40 EINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQ----PIPG 95 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + H + L+K+ + L +++ W ++PK+DG Sbjct: 96 KG--------QFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDGV 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y GK V RG+G G++ + I IP+ ++ N P ++ ++GE+ Sbjct: 137 AVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQGEL------ 189 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 FL ++ A + N R+ +G L R +P+ + + F+ + G M Sbjct: 190 FLLMDGHQQA--KSGGVNARSTVAGALMRKSPSPLLAQVGVFIWA-------WPDGPTTM 240 Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +K ++ +GFP + H V + + ++ LP+ DG+V + +E + Sbjct: 241 KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEEEPAGRY 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +A +W ++ K+ Q + DI +GRTG T V + P+ I Sbjct: 300 W--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKI----------- 346 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQP 427 ++ +I+ ++ DI GD + + AG IP++ +++ V++R+ P Sbjct: 347 DDKWIRRVNIGSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAP 401 >gi|327250774|gb|EGE62476.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli STEC_7v] Length = 469 Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 103/487 (21%), Positives = 197/487 (40%), Gaps = 91/487 (18%) Query: 116 RFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175 R W ++ ++ ++PK+DG +T+ Y GK A RG+G GED + + IP++P+ Sbjct: 19 RLWMREHND---LWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLIPSVPQ 75 Query: 176 VLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY 235 +S + ++GE+++ + + +M + N R+ +G+L R +D Sbjct: 76 TVSGPLVNST-LQGEIFLKREGH--IQQQMGGI------NARSKVAGLLMRQGNSDTLNS 126 Query: 236 LNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR--- 292 L FV +++ + LQ++ GF + T+ V+ +E++ IR Sbjct: 127 LGVFVWAWPDGTQLMT----DRLQQLTTAGFTLT------QTYTRAVNNADEVERIRNEW 176 Query: 293 --STLPYDIDGLVYKVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIG 347 + LP+ DG+V + K+ R P W+++ K+ + I +G Sbjct: 177 WKAKLPFVTDGVVVRA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVG 231 Query: 348 RTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRA 406 ++G ++ VA L PV + + + G V R DI GD++LV A Sbjct: 232 KSGKISVVASLVPVMLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLA 279 Query: 407 GEVIPKVVDIIV--NERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLA 463 G+ IP++ +++ ER P + F S S V Sbjct: 280 GQGIPRIDNVVWRGTERTKPTPPENRFNSLTCYFASDV---------------------- 317 Query: 464 CSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTST 521 C Q + RL S+ ++G+G+ ++ + FS + + Sbjct: 318 CQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTP 365 Query: 522 TKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSY 577 +++N G L+ N R R++ ++GI + A RS ++ S Sbjct: 366 EQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFST 425 Query: 578 QNFAQEI 584 + F Q++ Sbjct: 426 EQFWQQL 432 >gi|22124020|ref|NP_667443.1| NAD-dependent DNA ligase LigB [Yersinia pestis KIM 10] gi|45439907|ref|NP_991446.1| NAD-dependent DNA ligase LigB [Yersinia pestis biovar Microtus str. 91001] gi|108813969|ref|YP_649736.1| NAD-dependent DNA ligase LigB [Yersinia pestis Nepal516] gi|145601104|ref|YP_001165180.1| NAD-dependent DNA ligase LigB [Yersinia pestis Pestoides F] gi|150260895|ref|ZP_01917623.1| putative DNA ligase [Yersinia pestis CA88-4125] gi|166213764|ref|ZP_02239799.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. B42003004] gi|167419052|ref|ZP_02310805.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426671|ref|ZP_02318424.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468217|ref|ZP_02332921.1| NAD-dependent DNA ligase LigB [Yersinia pestis FV-1] gi|170026382|ref|YP_001722887.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis YPIII] gi|218927262|ref|YP_002345137.1| NAD-dependent DNA ligase LigB [Yersinia pestis CO92] gi|229836152|ref|ZP_04456320.1| putative DNA ligase [Yersinia pestis Pestoides A] gi|229839890|ref|ZP_04460049.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841972|ref|ZP_04462127.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229904499|ref|ZP_04519610.1| putative DNA ligase [Yersinia pestis Nepal516] gi|270488499|ref|ZP_06205573.1| NAD-dependent DNA ligase OB-fold domain protein [Yersinia pestis KIM D27] gi|294502148|ref|YP_003566210.1| DNA ligase [Yersinia pestis Z176003] gi|123073072|sp|Q1CCZ4|LIGB_YERPN RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|123777855|sp|Q7CLB2|LIGB_YERPE RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|166226366|sp|A4TSE5|LIGB_YERPP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|226737629|sp|B1JQZ3|LIGB_YERPY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|21956763|gb|AAM83694.1|AE013610_6 putative enzyme [Yersinia pestis KIM 10] gi|45434762|gb|AAS60323.1| putative DNA ligase [Yersinia pestis biovar Microtus str. 91001] gi|108777617|gb|ABG20136.1| DNA ligase [Yersinia pestis Nepal516] gi|115345873|emb|CAL18731.1| putative DNA ligase [Yersinia pestis CO92] gi|145212800|gb|ABP42207.1| DNA ligase [Yersinia pestis Pestoides F] gi|149290303|gb|EDM40380.1| putative DNA ligase [Yersinia pestis CA88-4125] gi|166205166|gb|EDR49646.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. B42003004] gi|166963046|gb|EDR59067.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167054360|gb|EDR64177.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752916|gb|ACA70434.1| DNA ligase (NAD(+)) [Yersinia pseudotuberculosis YPIII] gi|229678617|gb|EEO74722.1| putative DNA ligase [Yersinia pestis Nepal516] gi|229690282|gb|EEO82336.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229696256|gb|EEO86303.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706600|gb|EEO92606.1| putative DNA ligase [Yersinia pestis Pestoides A] gi|270337003|gb|EFA47780.1| NAD-dependent DNA ligase OB-fold domain protein [Yersinia pestis KIM D27] gi|294352607|gb|ADE62948.1| DNA ligase [Yersinia pestis Z176003] gi|320013395|gb|ADV96966.1| putative DNA ligase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 567 Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 92/415 (22%), Positives = 177/415 (42%), Gaps = 60/415 (14%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDAL--KRRCDAIAHAFPDLARSEDPNGPLNK 77 E+++LEQ+++ Y+Q + D YD L K R PD S+ P+ Sbjct: 40 EINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQ----PIPG 95 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + H + L+K+ + L +++ W ++PK+DG Sbjct: 96 KG--------QFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDGV 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y GK V RG+G G++ + I IP+ ++ N P ++ ++GE+ Sbjct: 137 AVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQGEL------ 189 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 FL ++ A + N R+ +G L R +P+ + + F+ + G M Sbjct: 190 FLLMDGHQQA--KSGGVNARSTVAGALMRKSPSPLLAQVGVFIWA-------WPDGPTTM 240 Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +K ++ +GFP + H V + + ++ LP+ DG+V + +E + Sbjct: 241 KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEEEPAGRY 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +A +W ++ K+ Q + DI +GRTG T V + P+ I Sbjct: 300 W--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKI----------- 346 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQP 427 ++ +I+ ++ DI GD + + AG IP++ +++ V++R+ P Sbjct: 347 DDKWIRRVNIGSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAP 401 >gi|291086421|ref|ZP_06571502.1| NAD-dependent DNA ligase adenylation domain protein [Citrobacter youngae ATCC 29220] gi|291068208|gb|EFE06317.1| NAD-dependent DNA ligase adenylation domain protein [Citrobacter youngae ATCC 29220] Length = 519 Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 108/541 (19%), Positives = 205/541 (37%), Gaps = 97/541 (17%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 ++ +D Y++ + D YD L + F D + S+ P+N Sbjct: 1 MTRWNDSYWKQGVSAVDDGVYDQLNAQLTQWQRCFGDDSSSDLSTPPINGT--------- 51 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 + H +P + K+ + + L++++ W ++PK+DG +T+ Y G Sbjct: 52 -IAHPVPHTGVRKLADKQALQQWMRVRSDLW-----------VQPKVDGVAVTLVYRHGN 99 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 V A RG+G GED + + IP++P + + ++GE++ L E Sbjct: 100 LVRAISRGNGLKGEDWTQKVLLIPSVPHT-TKGLLANSTLQGEIF--------LQQEGHV 150 Query: 208 VGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267 ++ N R+ +G++ R + ++ R L F+ + + E L ++ GF Sbjct: 151 QQQRGGMNARSKVAGMMMRQSNPELLRSLAIFIWAWPDGPAVMS----ERLAQLTAAGFS 206 Query: 268 VNNGVRQA-----NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 QA + H ++ S LP+ DG+V + K+ R P Sbjct: 207 FAQRYTQAVKNADDVEHARARWWT------SALPFVTDGVVVRSG-----KEPQARYWVP 255 Query: 323 ---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 W+ + K+ + + DI +G++G + VA L PV + + + Sbjct: 256 GQGDWLAAWKYPPVAQVSEVTDIQFSVGKSGKIAVVALLAPVMLDDKRVQRVNI------ 309 Query: 380 KGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 G V R DI GDR+L+ AG+ IP+ +D +V +P Sbjct: 310 ------GSVRRWNEWDIAPGDRILISLAGQGIPR-IDEVVWRSTQRTKP----------- 351 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 P G+ + C Q + RL +++ +EG+G + ++ Sbjct: 352 -------KPPEGRFNSMTCFYATPECYEQFIARLVWLGAKEVLELEGIG----EAGWREL 400 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 A+ L + Q ST G ++ N R++ R++ ++G Sbjct: 401 HQAYRFEHIFSWLGLTQEQLQST--------LGVSKGEKIWHQFNLSRHLPFTRWVIAMG 452 Query: 559 I 559 I Sbjct: 453 I 453 >gi|257096605|sp|A9R666|LIGB_YERPG RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B Length = 567 Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 92/415 (22%), Positives = 177/415 (42%), Gaps = 60/415 (14%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDAL--KRRCDAIAHAFPDLARSEDPNGPLNK 77 E+++LEQ+++ Y+Q + D YD L K R PD S+ P+ Sbjct: 40 EINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQ----PIPG 95 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + H + L+K+ + L +++ W ++PK+DG Sbjct: 96 KG--------QFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDGV 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y GK V RG+G G++ + I IP+ ++ N P ++ ++GE+ Sbjct: 137 AVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQGEL------ 189 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 FL ++ A + N R+ +G L R +P+ + + F+ + G M Sbjct: 190 FLLMDGHQQA--KSGGVNARSTVAGALMRKSPSPLLAQVGVFIWA-------WPDGPTTM 240 Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +K ++ +GFP + H V + + ++ LP+ DG+V + +E + Sbjct: 241 KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEEEPAGRY 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +A +W ++ K+ Q + DI +GRTG T V + P+ I Sbjct: 300 W--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKI----------- 346 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQP 427 ++ +I+ ++ DI GD + + AG IP++ +++ V++R+ P Sbjct: 347 DDKWIRRVNIGSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAP 401 >gi|46401852|ref|YP_006944.1| NAD-dependent DNA ligase, subunit A [Enterobacteria phage T5] gi|45775030|gb|AAS77162.1| NAD-dependent DNA ligase, subunit A [Enterobacteria phage T5] gi|51512054|gb|AAU05253.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage T5] Length = 323 Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 108/400 (27%), Positives = 173/400 (43%), Gaps = 86/400 (21%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++++++ I + YYQ +I D EYD L +R FP L P G Sbjct: 1 MTNVKEFIKRCQEAYYQ-GMSLISDEEYDRLVKR-------FP-LEEEIGPKG------- 44 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + H SL+K++ Y K N + K+DG I+ Sbjct: 45 -------DIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAIS 85 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + Y G+FV A RG+G G DV++ +R + IP+ +S +P ++ GEV I+K Sbjct: 86 LLYINGEFVQALTRGNGILGNDVTSNVRLL-NIPKKISQKVP--TQITGEVLITKE---- 138 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 N RN ASG + + D FV +G+ IF + Sbjct: 139 ------------VENKRNFASGAINLKDSDD-------FVQRIGEGGLIF------VAYG 173 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNE----MKSIRSTLPY-DIDGLVYKVDEFSLQKQL 315 ++C V G+ +A ++ NE + ++RS + DG V ++++ + + Sbjct: 174 IQCSAESV--GITEA-YLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNNKFFRE 230 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G + PR + K E+ T L ++ Q+G +G +TPV EPV I A I ATL+N Sbjct: 231 GWTNKFPRGAFAIKEDEEGEITTLTKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNN 290 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 DYI L D+ +G ++ V RAG VIP +V+ Sbjct: 291 VDYINSL-----------DLEIGCQIRVIRAGGVIPCIVE 319 >gi|108809492|ref|YP_653408.1| NAD-dependent DNA ligase LigB [Yersinia pestis Antiqua] gi|167402095|ref|ZP_02307572.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. UG05-0454] gi|123072562|sp|Q1C259|LIGB_YERPA RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] B gi|108781405|gb|ABG15463.1| putative DNA ligase [Yersinia pestis Antiqua] gi|167048470|gb|EDR59878.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 567 Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 95/415 (22%), Positives = 178/415 (42%), Gaps = 60/415 (14%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDAL--KRRCDAIAHAFPDLARSEDPNGPLNK 77 E+++LEQ+++ Y+Q + D YD L K R PD S+ Sbjct: 40 EINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQ-------P 92 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 I G+ L V HS L+K+ + L +++ W ++PK+DG Sbjct: 93 IPGKGQF-LHPVAHS----GLKKLKDETALTRWMAGRKNLW-----------VQPKVDGV 136 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y GK V RG+G G++ + I IP+ ++ N P ++ ++GE+ Sbjct: 137 AVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQGEL------ 189 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 FL ++ A + N R+ +G L R +P+ + + F+ + G M Sbjct: 190 FLLMDGHQQA--KSGGVNARSTVAGALMRKSPSPLLAQVGVFIWA-------WPDGPTTM 240 Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +K ++ +GFP + H V + + ++ LP+ DG+V + +E + Sbjct: 241 KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEEEPAGRY 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +A +W ++ K+ Q + DI +GRTG T V + P+ I Sbjct: 300 W--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKI----------- 346 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQP 427 ++ +I+ ++ DI GD + + AG IP++ +++ V++R+ P Sbjct: 347 DDKWIRRVNIGSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAP 401 >gi|165926076|ref|ZP_02221908.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. F1991016] gi|165936320|ref|ZP_02224889.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. IP275] gi|166011507|ref|ZP_02232405.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. E1979001] gi|165915934|gb|EDR34542.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. IP275] gi|165921936|gb|EDR39113.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. F1991016] gi|165989653|gb|EDR41954.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. E1979001] gi|262360227|gb|ACY56948.1| DNA ligase, NAD-dependent [Yersinia pestis D106004] gi|262364173|gb|ACY60730.1| DNA ligase, NAD-dependent [Yersinia pestis D182038] Length = 558 Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 95/416 (22%), Positives = 181/416 (43%), Gaps = 62/416 (14%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDAL--KRRCDAIAHAFPDLARSEDPNGPLNK 77 E+++LEQ+++ Y+Q + D YD L K R PD S+ P+ Sbjct: 31 EINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQ----PIPG 86 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + H + L+K+ + L +++ W ++PK+DG Sbjct: 87 KG--------QFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDGV 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y GK V RG+G G++ + I IP+ ++ N P ++ ++GE+ Sbjct: 128 AVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQGEL------ 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 FL ++ A + N R+ +G L R +P+ + + F+ + G M Sbjct: 181 FLLMDGHQQA--KSGGVNARSTVAGALMRKSPSPLLAQVGVFIWA-------WPDGPTTM 231 Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +K ++ +GFP + H V + + ++ LP+ DG+V + +E + Sbjct: 232 KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEEEPAGRY 290 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +A +W ++ K+ Q + DI +GRTG T V + P+ I Sbjct: 291 W--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKI----------- 337 Query: 375 NEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQP 427 ++ +I+ ++ G V R + DI GD + + AG IP++ +++ V++R+ P Sbjct: 338 DDKWIRRVNI-GSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAP 392 >gi|162420613|ref|YP_001604687.1| NAD-dependent DNA ligase LigB [Yersinia pestis Angola] gi|162353428|gb|ABX87376.1| DNA ligase, NAD-dependent [Yersinia pestis Angola] Length = 558 Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 92/415 (22%), Positives = 177/415 (42%), Gaps = 60/415 (14%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDAL--KRRCDAIAHAFPDLARSEDPNGPLNK 77 E+++LEQ+++ Y+Q + D YD L K R PD S+ P+ Sbjct: 31 EINALEQQLNKWSAAYHQQGHSPVTDDIYDQLQDKLRVWQSCRGLPDKTESQ----PIPG 86 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 G + H + L+K+ + L +++ W ++PK+DG Sbjct: 87 KG--------QFLHPVAHTGLKKLKDETALTRWMAGRKNLW-----------VQPKVDGV 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 +T+ Y GK V RG+G G++ + I IP+ ++ N P ++ ++GE+ Sbjct: 128 AVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIA-NAPALLTLQGEL------ 180 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 FL ++ A + N R+ +G L R +P+ + + F+ + G M Sbjct: 181 FLLMDGHQQA--KSGGVNARSTVAGALMRKSPSPLLAQVGVFIWA-------WPDGPTTM 231 Query: 258 LQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +K ++ +GFP + H V + + ++ LP+ DG+V + +E + Sbjct: 232 KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQF-WFQAPLPFVTDGVVVRQEEEPAGRY 290 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 +A +W ++ K+ Q + DI +GRTG T V + P+ I Sbjct: 291 W--QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKI----------- 337 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQP 427 ++ +I+ ++ DI GD + + AG IP++ +++ V++R+ P Sbjct: 338 DDKWIRRVNIGSVTRWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAP 392 >gi|59897249|gb|AAX12044.1| DNA ligase [Enterobacteria phage T5] Length = 323 Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 108/400 (27%), Positives = 172/400 (43%), Gaps = 86/400 (21%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++++++ I + YYQ +I D EYD L +R FP L P G Sbjct: 1 MTNVKEFIKRCQEAYYQ-GMSLISDEEYDRLVKR-------FP-LEEEIGPKG------- 44 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + H SL+K++ Y K N + K+DG I+ Sbjct: 45 -------DIPHLYRMYSLQKVY------------YNRGDKPPFNPLGQVETDKLDGCAIS 85 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + Y G+FV A RG+G G DV++ +R + IP+ +S +P ++ GEV I+K Sbjct: 86 LLYINGEFVQALTRGNGILGNDVTSNVRLL-NIPKKISQKVP--TQITGEVLITKE---- 138 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 N RN ASG + + D FV +G+ IF + Sbjct: 139 ------------VENKRNFASGAINLKDSDD-------FVQRIGEGGLIF------VAYG 173 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNE----MKSIRSTLPY-DIDGLVYKVDEFSLQKQL 315 ++C V G+ +A ++ NE + ++RS + DG V ++++ + Sbjct: 174 IQCSAESV--GITEA-YLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNHQFFRE 230 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G + PR + K E+ T L ++ Q+G +G +TPV EPV I A I ATL+N Sbjct: 231 GWTNKFPRGAFAIKEDEEGEITTLTKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNN 290 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 DYI L D+ +G ++ V RAG VIP +V+ Sbjct: 291 VDYINSL-----------DLEIGCQIRVIRAGGVIPCIVE 319 >gi|318603769|emb|CBY25267.1| DNA ligase, LigB [Yersinia enterocolitica subsp. palearctica Y11] Length = 565 Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 100/427 (23%), Positives = 181/427 (42%), Gaps = 68/427 (15%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA--IAHAFPDLA--RSED 70 E+ E+ LE+++ + Y+Q I D YD L+ + + PD R Sbjct: 33 ERMSGEMHLLEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWRLCLGLPDKTDIRPIP 92 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 NG K+ H + L+K+ + L ++T W + Sbjct: 93 GNG--------------KMLHPVAHTGLKKLKDEAALISWMTGRKDLW-----------V 127 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PKIDG +T+ Y+ GK RG+G G++ + I IP+ ++ + P ++ ++GE Sbjct: 128 QPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIA-SAPPLLTLQGE 186 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 V FL + A + AN R + +G L R + + + L F+ + Sbjct: 187 V------FLQMEGHQQA--QSGGANARASVAGALMRKSVSPLLAKLGIFIWA-------W 231 Query: 251 AKGQYEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 G M++K R L GFP+ + V+ + + + + LP+ DG+V + + Sbjct: 232 PDGPKSMVEKSRLLQEMGFPLTAHYSEPVISSSDVAQWRD-RWFKMPLPFVTDGVVIRQE 290 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +A W ++ K+ Q T + DI +GRTG +T + ++ PV I Sbjct: 291 NVPAGRYW--QATPGNWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKI---- 344 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH--- 422 ++ +I+ ++ DI GD+V + AG+ IP++ +I V++R Sbjct: 345 -------DDKWIRRVNIGSIARWRLWDIVPGDQVTISLAGQGIPRLDKVIWRVSQRQEIV 397 Query: 423 -PDAQPF 428 PDA F Sbjct: 398 PPDADKF 404 >gi|290473319|ref|YP_003466185.1| DNA ligase [Xenorhabdus bovienii SS-2004] gi|289172618|emb|CBJ79387.1| DNA ligase (modular protein) [Xenorhabdus bovienii SS-2004] Length = 619 Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 105/437 (24%), Positives = 184/437 (42%), Gaps = 94/437 (21%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYD------ALKRRCDAIAHAFPDLARS 68 E+ ++E+ L ++++ D Y Q I D YD L R C L ++ Sbjct: 51 EKIQREMQHLTRQMAEWDQLYRQQGISEIDDEFYDQLLEILTLWRTC---------LHQT 101 Query: 69 EDPNGPLNKIGGEMNLSLFKVT--------HSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 D S F V H + L K+ ++++ +++ W Sbjct: 102 SD--------------STFSVAVPREGKQPHPVQHTGLNKLKGVKEIHQWLQGRSVVW-- 145 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 L+PK+DG +T+ YEKG+ V RG+G G + I IP+ + N Sbjct: 146 ---------LQPKVDGVAVTLVYEKGRLVGLISRGNGSEGTNWMDKSSFITDIPKQIK-N 195 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240 PE + ++GE++ +++ + + +A G+ R+ +G++ R + + F+ Sbjct: 196 APERLVLQGELFWQQDN----HRQSVAGGQ----GARSKVAGLMMRKSSAPELGQIGIFI 247 Query: 241 HGLGKTSEIFAKGQYEM---LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRS---- 293 G + G EM L+++ +GFP H I S + K S Sbjct: 248 WG-------WPDGPNEMAVKLERLASMGFPTAQ-----QYSHRIFSAEDAEKRWSSYFIQ 295 Query: 294 TLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILT 353 LP+ DG+V + + +Q RA S W I+ K+ +Q T + D++ +IGRTG ++ Sbjct: 296 PLPFATDGVVLRQETEPTGRQW--RAGSNSWAIAWKYPLQQQLTTVRDVNFKIGRTGRIS 353 Query: 354 PVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPK 412 + LE V + + L G V R + ++ GD+V V AG +PK Sbjct: 354 VLLELEKVKLDDRQVRRVNL------------GSVSRWRQWNVYPGDKVTVALAGHGVPK 401 Query: 413 VVDII--VNERHPDAQP 427 + ++ + ER PD QP Sbjct: 402 LDKVVWRIAER-PDIQP 417 >gi|332159673|ref|YP_004296250.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325663903|gb|ADZ40547.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 565 Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 100/427 (23%), Positives = 181/427 (42%), Gaps = 68/427 (15%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA--IAHAFPDLA--RSED 70 E+ E+ LE+++ + Y+Q I D YD L+ + + PD R Sbjct: 33 ERMSGEMHILEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWRLCLGLPDKTDIRPIP 92 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 NG K+ H + L+K+ + L ++T W + Sbjct: 93 GNG--------------KMLHPVAHTGLKKLKDEAALISWMTGRKDLW-----------V 127 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PKIDG +T+ Y+ GK RG+G G++ + I IP+ ++ + P ++ ++GE Sbjct: 128 QPKIDGVAVTLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIA-SAPPLLTLQGE 186 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 V FL + A + AN R + +G L R + + + L F+ + Sbjct: 187 V------FLQMEGHQQA--QSGGANARASVAGALMRKSVSPLLAKLGIFIWA-------W 231 Query: 251 AKGQYEMLQKMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 G M++K R L GFP+ + V+ + + + + LP+ DG+V + + Sbjct: 232 PDGPKSMVEKSRLLQEMGFPLTAHYSEPVISSSDVAQWRD-RWFKMPLPFVTDGVVIRQE 290 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +A W ++ K+ Q T + DI +GRTG +T + ++ PV I Sbjct: 291 NVPAGRYW--QATPGNWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKI---- 344 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH--- 422 ++ +I+ ++ DI GD+V + AG+ IP++ +I V++R Sbjct: 345 -------DDKWIRRVNIGSIARWRLWDIVPGDQVTISLAGQGIPRLDKVIWRVSQRQEIV 397 Query: 423 -PDAQPF 428 PDA F Sbjct: 398 PPDADKF 404 >gi|182682929|ref|YP_001837053.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage EPS7] gi|182630641|gb|ACB97573.1| NAD-dependent DNA ligase subunit A [Enterobacteria phage EPS7] Length = 323 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 106/400 (26%), Positives = 173/400 (43%), Gaps = 86/400 (21%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++++++ I + YYQ +I D EYD L +R FP L P G Sbjct: 1 MTNVKEFIKRCQEAYYQ-GMSLISDEEYDRLIKR-------FP-LEEEIGPKG------- 44 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 + H SL+K++ Y K N + K+DG I+ Sbjct: 45 -------DIPHLYRMYSLQKVY------------YGRGDKAPFNPLGQVETDKLDGCAIS 85 Query: 141 IRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLA 200 + Y G+FV A RG+G G DV+ ++ + IP+ +S +P ++ GEV I+K Sbjct: 86 LLYINGEFVQALTRGNGILGNDVTHNVKML-NIPKTISQKVP--TQITGEVLITKE---- 138 Query: 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 N RN ASG + + D F+ +G+ IF + Sbjct: 139 ------------VENKRNYASGAINLKDSDD-------FIQRIGEGGLIF------VAYG 173 Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNE----MKSIRSTLPY-DIDGLVYKVDEFSLQKQL 315 ++C V G+ +A ++ NE + ++RS + DG V ++++ + + Sbjct: 174 IQCSAETV--GITEA-YLKDMLWLENENFLTVVNVRSFFKWIPTDGKVVRINDNNKFFRE 230 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G + PR + K E+ T L+ ++ Q+G +G +TPV EPV I A I ATL+N Sbjct: 231 GWTNKFPRGAFAIKEDEEGEITTLVKVEWQVGASGKVTPVGYFEPVIIDDATIVKATLNN 290 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 DYI L D+ +G ++ V RAG VIP +V+ Sbjct: 291 VDYINAL-----------DLEIGCQIRVIRAGGVIPCIVE 319 >gi|268592261|ref|ZP_06126482.1| DNA ligase B [Providencia rettgeri DSM 1131] gi|291312038|gb|EFE52491.1| DNA ligase B [Providencia rettgeri DSM 1131] Length = 574 Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 96/422 (22%), Positives = 168/422 (39%), Gaps = 72/422 (17%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDAL------KRRCDAIAHA 61 P E + + +E L +++ + Y I D YD L +RC + Sbjct: 41 PCEKQNSKIISQESHRLGKQLQLWNQAYRLAGSSSISDEAYDQLFNLWRSLQRCQQLPEE 100 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 P++ E + H IP L+K+ N ++ +I W Sbjct: 101 LPEVLLPEKSQLTM---------------HPIPHTGLKKL-NELEVYSWIETRKNIW--- 141 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNI 181 L+PK+DG +T+ Y+ GK + RG+ G + A IP IP+ + Sbjct: 142 --------LQPKVDGVAVTLVYKNGKLISMISRGNSVEGIEWRAKADFIPAIPK--QIKY 191 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFV 240 ++ ++GE++ N + + N RN +G L R N PT + + F+ Sbjct: 192 SGMLVLQGELFWRMNGHIQ--------AKSGGVNARNKIAGWLMRKNEPTALEENIGIFI 243 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STL 295 + K Q +L + +GFP+ A + + + K +R L Sbjct: 244 WAW-PAGDANPKTQLTLLSE---IGFPL------AEQYSHKIENKIQAKQLREYYYQGQL 293 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 P+ DG+V K F L +++ W I+ K+ + + + + IGRTG ++ V Sbjct: 294 PFATDGIVLK--NFPAPAALAWQSKQNSWAIAWKYPLRSVLSEVTKLQFNIGRTGRISVV 351 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVD 415 A + P+NI I+ ++A RD+ VGD++LV +G PK+ D Sbjct: 352 ASITPINIDSKTISK-----------VNAGSLSSWEKRDLLVGDKILVSLSGLGSPKIED 400 Query: 416 II 417 +I Sbjct: 401 VI 402 >gi|62129865|gb|AAX67568.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 502 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 108/520 (20%), Positives = 195/520 (37%), Gaps = 93/520 (17%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++G Sbjct: 63 VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQG 121 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + R N R+ +G+L R + L F+ Sbjct: 122 EIFLQREGHIQQ--------RMGGMNARSKVAGMLMRQDNASALNSLGIFIWA------- 166 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + G M +++ L G N + V +E++ R S LP+ DG+V Sbjct: 167 WPDGPANMPERLSQL---AKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFVTDGVVI 223 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 ++ + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 224 RMAKEPASQHW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILD 281 Query: 365 GALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH- 422 + + G V R DI GD++LV AG+ IP++ +++ R Sbjct: 282 DKRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRER 329 Query: 423 -----PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 PD+ S F C Q + RL S Sbjct: 330 SKPVPPDSHFNSLTCFY-------------------------ASATCQEQFISRLVWLGS 364 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A ++G+G+ ++ F IF+ ++ +I N GF Sbjct: 365 RSALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGFAKGKSEQ 414 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 ++ N R R+I ++ I A + S + + ++ W Sbjct: 415 IWRQFNLARRQPFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQ 464 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG 637 L P G+ A ++++ NP+ L + P G Sbjct: 465 L---PATGERRAGRVIDWRDNPQIKTLSRWLAAQHIPGFG 501 >gi|58699501|ref|ZP_00374229.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila ananassae] gi|58533981|gb|EAL58252.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila ananassae] Length = 143 Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 82/141 (58%), Gaps = 12/141 (8%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L+ +I+YH+ Y+Q +KP I D+EYD LK++ +A P++ +++ +G + Sbjct: 11 LQDQINYHNVLYHQKNKPEISDAEYDELKKK---LAEIEPEIYATQE------SVGAPPD 61 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 KV H P LSLE ++ + + KF+++I RF ++ I EPKIDG + Y Sbjct: 62 ERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLI---EDKIEILCEPKIDGLSFSAIY 118 Query: 144 EKGKFVYAALRGDGHSGEDVS 164 E G+FV AA RGDG GEDV+ Sbjct: 119 EDGRFVKAATRGDGFVGEDVT 139 >gi|170767052|ref|ZP_02901505.1| NAD(+)-dependent DNA ligase LigB [Escherichia albertii TW07627] gi|170124490|gb|EDS93421.1| NAD(+)-dependent DNA ligase LigB [Escherichia albertii TW07627] Length = 561 Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 129/624 (20%), Positives = 236/624 (37%), Gaps = 107/624 (17%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A E+S L+Q+I DD Y++ + I DS YD L R F + + Sbjct: 24 AWSPAKAHDEISRLQQQIKQWDDDYWKEGQSTIEDSIYDQLSARLAQWQRCFGEETNRDA 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PL+ V H + + K+ + + +++ W + Sbjct: 84 IAPPLHGT----------VMHPVAHTGVRKLTDKNAVSQWMRGRGDLW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I ++P +S + ++GE Sbjct: 123 QPKVDGVAVTLVYHDGKLSQAISRGNGLKGEDWTQKVRQISSVPHSVSGPLANST-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R+ +G++ R + L F+ + Sbjct: 182 IFLQRESH--IQQQMGGM------NARSKVAGLMMRQDNAGTLNSLGVFIWA-------W 226 Query: 251 AKGQYEMLQKMRCL---GFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK- 305 G M ++ L GF + R + NE ++ LP+ DG+V + Sbjct: 227 PDGPQSMTDRLHLLATAGFALTQRYTRAVKNADEVECARNEW--WKAKLPFVTDGVVVRG 284 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 E L +A W+ + K+ + I +G++G ++ VA L PV + Sbjct: 285 AKEPESSHWLPGQA---DWLAAWKYQPVAQVAGVNAIQFAVGKSGKISVVASLAPVMLDD 341 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERH 422 + + G V R DI GD++L+ AG+ IP++ D++ ER Sbjct: 342 KRVQRVNI------------GSVRRWQEWDIAPGDQILISLAGQGIPRIDDVVWRGAERT 389 Query: 423 PDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P + F S S V C Q + RL S+ Sbjct: 390 KPVPPENRFNSLTCYFASDV----------------------CREQFISRLVWLGSKQVL 427 Query: 482 NIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 +EG+G+ ++ + FS +L + ++ N G L+ Sbjct: 428 GLEGIGEAGWRTLHQTHRFEHLFS------WLSL------TPDQLHNTPGIAKSKSEQLW 475 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEI----ARSLAKYYLSYQNFAQEINNIIAHNND-- 593 N R R++ ++GI A + RS + + + Q++ A Sbjct: 476 HQFNLARKQPFTRWVMAMGIPLTQAALNASDERSWEQLLQRTEQYWQQLPGTGARRASKV 535 Query: 594 -DWLSLIRVPLVGDII-AQAIVEF 615 +W ++ ++G+ + AQ I F Sbjct: 536 MEWKDNAQIKMLGNWLAAQQITGF 559 >gi|300725264|ref|YP_003714593.1| DNA ligase [Xenorhabdus nematophila ATCC 19061] gi|297631810|emb|CBJ92531.1| DNA ligase [Xenorhabdus nematophila ATCC 19061] Length = 577 Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 105/439 (23%), Positives = 184/439 (41%), Gaps = 82/439 (18%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDAL------KRRCDAIAHAFPDLARS 68 E+ + E + L+Q+++ D Y Q I D YD L +RC Sbjct: 40 EKLQHETAHLKQQMAKWDHLYRQQGISEIDDEIYDQLLETLRLWQRCS-----------E 88 Query: 69 EDPNG----PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 + P G P+++ G K H + L K+ + +R+++ + W Sbjct: 89 QIPEGTFAVPVSQEG--------KQPHPVQHTGLHKLKEVRGVRQWLQGRTKVW------ 134 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 L+PKIDG +T+ YEKG+ + RG+G G D I +IP+++ + PE Sbjct: 135 -----LQPKIDGVAVTLIYEKGQLMRLISRGNGIEGTDWMDKSPFISSIPKLIK-HAPEH 188 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFFVHGL 243 + ++GE++ + + VG + R+ +G++ R P + R + F+ Sbjct: 189 LVLQGELFWQQK-----SHRQFTVGSQ---GARSKVAGLMMRKTPEPEALRQIGIFIWS- 239 Query: 244 GKTSEIFAKGQYEMLQK---MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 + G +M+ K + +GFP+ T H + LP+ D Sbjct: 240 ------WPDGPTDMVAKSEQLASMGFPLTQQYSHPIT-HIDDAEKRWTDYFVQPLPFATD 292 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+V + + +Q R S W I+ K+ +Q T + D++ IGRTG ++ V LE Sbjct: 293 GVVLRQEIEPTGRQW--RTGSNSWAIAWKYPLRQQVTTVKDVNFTIGRTGRISVVLMLEK 350 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVN 419 V + ++ ++ G V R R++ GD++ V AG IPK+ ++ Sbjct: 351 VRLDDRQVSRVSI------------GSVKRWKQRNVYPGDKITVALAGHGIPKLDKVVWR 398 Query: 420 --ERH----PDAQPFSFPS 432 ER PD Q + F S Sbjct: 399 MVERPVIQLPDEQHYHFLS 417 >gi|299145804|ref|ZP_07038872.1| putative BRCA1 C Terminus (BRCT) domain protein [Bacteroides sp. 3_1_23] gi|298516295|gb|EFI40176.1| putative BRCA1 C Terminus (BRCT) domain protein [Bacteroides sp. 3_1_23] Length = 652 Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 160/714 (22%), Positives = 291/714 (40%), Gaps = 126/714 (17%) Query: 36 YQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL-SLFKVTHSIP 94 Y+ P I D+EYDA +L ++ DP+ K + K IP Sbjct: 24 YRMGTPEISDAEYDAEI-----------ELLKTLDPDNEWFKHTEPAFVPETRKRALPIP 72 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL K+ +I +L+K+ Y K + + PK+DG + +Y L Sbjct: 73 MKSLNKVKDISELKKW----YMSLGLKGNAGVICM--PKLDGLSL---------LYNELT 117 Query: 155 GDGHS-------GEDVSACIRAIPTIPRVLSLNIPEIIEVR-GEVYISKNDFLALNDEMI 206 G+ +S G+D ++ RA + N GE I+++D+ E Sbjct: 118 GETYSRGGIENEGQDCTSHYRA-----SIQCYNPASCFHYTFGEFVINRSDW-----EQH 167 Query: 207 AVGRKP------YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQK 260 G++ + +PRN A+G+L R P D + +FF +G+ ++S + + L + Sbjct: 168 FHGKRSKFTGDIFKSPRNTAAGLLNRDEPCDYLEHASFFRYGVDESS-LHDYNNFHSLIE 226 Query: 261 MRCLGFPVNNGVRQANTFH-GIVSYYNE---MKSIRS-TLPYDIDGLVYKVDEFSLQKQL 315 C N +Q + +H + NE M + + Y IDG+V +D+ L + + Sbjct: 227 TIC------NIYQQEHLYHFAFIDELNEELLMNLFKEWSKVYPIDGIVIYIDDLRLWEVI 280 Query: 316 GERARS--PRWMISHKFAEKQAS--TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 G S P + I++K + S T + DI ++ ++G L PV +E V+ G + N Sbjct: 281 GRHQTSGNPLYAIAYKHPDFTESFETTVKDIVWKVSKSGALKPVVNIEMVDTGDCNMENP 340 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP-FSF 430 T +N +I +I G +LV R+G VIPK++ + + + + Sbjct: 341 TGYNAGWIN-----------DHEIAKGAEILVTRSGGVIPKILSTLTPATQEEQEKLWDE 389 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 S CP C S + + N C L+C QL ++ F E +G++ Sbjct: 390 MSECPHCGSPTMWNEN-------HIELCCTNLSCPGVQLAKIIFFYL--TCGAENMGEET 440 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 L F + F+ IPA + + + I GFGD S++ + N++ + Sbjct: 441 LSKIFNA---GFT-SIPAIL-------NITFNDLIKIEGFGD-SISKIILENNRKIMQGV 488 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 + L ++ + + K + Q E+ +++D S + + Sbjct: 489 D-----LATLMQASDCFKGIGK--IKAQKILDEM------DDEDLCSFCQGWYINHEPDV 535 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKI-------Q 662 +F P V+ LL P + E + ++ K +V G + + + Sbjct: 536 QSEDFKNCP---ITVQNLLLGYFPFMAFLEETKIPYKLSPKTVVLEGKCKGLSICVSGFR 592 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SKLEKAQQLGVKIMNEEQF 714 +E +T G + + +S+KT ++V D SK+ KA+ LG+ I++ E+F Sbjct: 593 DSNLEEVITNEGGKIVSGVSKKTTHLVVKDKSANSSKISKAKLLGIPILSIEEF 646 >gi|320177344|gb|EFW52346.1| DNA ligase , LigB [Shigella dysenteriae CDC 74-1112] Length = 508 Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 116/563 (20%), Positives = 215/563 (38%), Gaps = 106/563 (18%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+ +Q+I DD Y++ K + D YD L R F R + Sbjct: 24 AWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 181 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 232 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 + + L+++ GF + T+ V +E+ +R + LP+ DG+V + Sbjct: 233 S----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVR 282 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L V Sbjct: 283 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVM 337 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN-- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 338 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGA 385 Query: 420 ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ER P + F S S V C Q + RL S+ Sbjct: 386 ERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSK 423 Query: 479 DAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 ++G+G+ ++ + FS + + +++N G Sbjct: 424 QVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSA 471 Query: 537 NLYDSINKRRNISLERFIFSLGI 559 L+ N R R++ ++GI Sbjct: 472 QLWHQFNLARKQPFTRWVMAMGI 494 >gi|238759846|ref|ZP_04621002.1| DNA ligase B [Yersinia aldovae ATCC 35236] gi|238701907|gb|EEP94468.1| DNA ligase B [Yersinia aldovae ATCC 35236] Length = 532 Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 121/584 (20%), Positives = 232/584 (39%), Gaps = 88/584 (15%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ L +++ D Y+Q I D YD L + + E+ P+ G Sbjct: 4 EIKELTKQLGKWDIAYHQQGHSPIADDAYDQLVAKLHQWQLCHLPHGKQENKQ-PILGNG 62 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +H + L+K+ +D ++ W K N ++PK+DG + Sbjct: 63 --------QFSHPVAHTGLKKL---KDEATLVS-----WMKGRKN---LWVQPKVDGVAV 103 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 ++ Y G+ RG+G G++ + I IP+ + + P ++ ++GE+ FL Sbjct: 104 SLVYVNGELTQLISRGNGLKGQNWTDKATFISAIPQFI-VAAPPLLTLQGEL------FL 156 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGL--GKTSEIFAKGQYEM 257 + A + N R + +G L R +P+ + L + G S I KG+ Sbjct: 157 KMEGHQQA--QSGGVNARASVAGALMRKSPSLLLPQLGILIWAWPDGPKS-IVEKGKL-- 211 Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGE 317 +R +GFP+ ++ T V+ + + +S LP+ DG+V + +E + Sbjct: 212 ---LRIMGFPLTAEYSKSVTSSMDVTRWRQF-WFKSPLPFVTDGIVIRQEEEPAGRYW-- 265 Query: 318 RARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNED 377 +A W ++ K+ +Q T + +I IGRTG + V ++ P+ I ++ Sbjct: 266 QATPGPWSVAWKYPPQQQVTEVENIHFTIGRTGRSSVVLQVSPIKI-----------DDK 314 Query: 378 YIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPIC 437 +++ ++ RDI +GD+V + AG+ IP++ ++I D+ P + + Sbjct: 315 WVRRVNVGTIARWKQRDITLGDQVTIALAGQGIPRLENVIWRATQRDS--VVPPDWHQLH 372 Query: 438 QSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKS 497 Q R L P+ AC AQ L RL +I+ + Sbjct: 373 QWSCFRPL-PQ--------------ACEAQFLSRLIWLSGPQGLDIKNVSG-------GL 410 Query: 498 EDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSL 557 P + D+ +T +I + G G +Y + R ++ +L Sbjct: 411 WQPLIQQGLVNDLVGWLS---LTTEQIAGVPGIGHKRAEKIYQQFQQTRQKPFSDWLQAL 467 Query: 558 GIRHVGAE-------IARSLAKYYLSY---QNFAQEINNIIAHN 591 G G + RS+A++ Q A++I + + H+ Sbjct: 468 GFPLKGLNETQWQILLERSMAEWTSMAGIGQARAKQIKHFLHHH 511 >gi|330859974|emb|CBX70302.1| DNA ligase B [Yersinia enterocolitica W22703] Length = 527 Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 98/418 (23%), Positives = 177/418 (42%), Gaps = 68/418 (16%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA--IAHAFPDLA--RSEDPNGPLNKIG 79 LE+++ + Y+Q I D YD L+ + + PD R NG Sbjct: 4 LEKQLDQWNIAYHQQGISPIADDIYDQLQDKLHRWRLCLGLPDKTDIRPIPGNG------ 57 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 K+ H + L+K+ + L ++T W ++PKIDG + Sbjct: 58 --------KMLHPVAHTGLKKLKDEAALISWMTGRKDLW-----------VQPKIDGVAV 98 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 T+ Y+ GK RG+G G++ + I IP+ ++ + P ++ ++GEV FL Sbjct: 99 TLVYQAGKLTQVLSRGNGLKGQNWADKAPFISAIPQYIA-SAPPLLTLQGEV------FL 151 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 + A + AN R + +G L R + + + L F+ + G M++ Sbjct: 152 QMEGHQQA--QSGGANARASVAGALMRKSVSPLLAKLGIFIWA-------WPDGPKSMVE 202 Query: 260 KMRCL---GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 K R L GFP+ + V+ + + + + LP+ DG+V + + + Sbjct: 203 KSRLLQEMGFPLTAHYSEPVISSSDVAQWRD-RWFKMPLPFVTDGVVIRQENVPAGRYW- 260 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +A W ++ K+ Q T + DI +GRTG +T + ++ PV I ++ Sbjct: 261 -QATPGNWSVAWKYPPPQQITEIKDIHFTVGRTGKITAILQVVPVKI-----------DD 308 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERH----PDAQPF 428 +I+ ++ DI GD+V + AG+ IP++ +I V++R PDA F Sbjct: 309 KWIRRVNIGSIARWRLWDIVPGDQVTISLAGQGIPRLDKVIWRVSQRQEIVPPDADKF 366 >gi|225013054|ref|ZP_03703469.1| DNA ligase (NAD(+)) [Flavobacteria bacterium MS024-2A] gi|225002782|gb|EEG40763.1| DNA ligase (NAD(+)) [Flavobacteria bacterium MS024-2A] Length = 183 Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 5/172 (2%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ R ++ +L + + H+ YY PII D E+D L ++ + + PDL D N Sbjct: 1 MQEIRNKIEALREVLHDHNHRYYILDDPIISDYEFDQLLQQLNELEVQNPDLT---DLNS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + S V H P SL ++ E+L ++ R+ + ++ I +T E K Sbjct: 58 PTRRVGGGVTKSFETVPHKYPMYSLSNTYSKEELMQWEERLRK--SLGEETQIEYTCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 DG I++ YE G + A RGDG G++++ +R I T+P L + P+ Sbjct: 116 FDGASISLTYENGILIKAITRGDGLQGDNITTNVRTIKTVPLKLKSDFPKFF 167 >gi|32396668|gb|AAP49292.1| NAD-dependent DNA ligase [Bacillus sp. IMG-2] Length = 121 Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 214 ANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGV 272 ANPRNA++G LR+L+P R L+ FV+ + + + E L + LGF N Sbjct: 1 ANPRNASAGSLRQLDPKIAAKRNLDIFVYNIAELGDTGVSSHSEALDLLDELGFKTNRER 60 Query: 273 RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 R+ ++ +++ S LPYDIDG+V KVD Q+ LG A+SPRW I++KF Sbjct: 61 RKCKNIDEVIELLDQLLEKHSQLPYDIDGVVIKVDSLRQQEALGATAKSPRWAIAYKF 118 >gi|309800389|ref|ZP_07694554.1| DNA ligase [Streptococcus infantis SK1302] gi|308115980|gb|EFO53491.1| DNA ligase [Streptococcus infantis SK1302] Length = 240 Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 58/279 (20%) Query: 426 QPFSFPSFCPICQSRVV--------RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + P+ CP C S+++ R +NP+ C AQ E L HF S Sbjct: 4 EKLDIPTNCPSCDSKLLHFEDEVALRCINPR---------------CPAQIKEGLTHFAS 48 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVS 534 RDA NI GLG + F ++ ++ ADI+ L +E++L G + S Sbjct: 49 RDAMNISGLGPSIVKKLFAAD----LVKDVADIYHL---------TVEDLLLLDGIKEKS 95 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 LY +I + S E+ +F LGIRHVG++ ++ L + + S ++ AQ IA Sbjct: 96 AQKLYQAIQASKENSAEKLLFGLGIRHVGSKASQLLLQNFHSIESLAQANPEEIA----- 150 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS---IGRHEKNVSSE--IEN 649 + +G +IAQ++ ++ + E LL+E+ S + + V++ + Sbjct: 151 -----SIESLGSVIAQSLQTYFATEGS----EILLRELKESGVNLDYKGQTVAANAALSG 201 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 +V TG L+++ R +A+ + LGA V+ +S+K ++ Sbjct: 202 LTVVLTGKLERLNRSEAKNKLESLGAKVTGSVSKKQTLL 240 >gi|212711586|ref|ZP_03319714.1| hypothetical protein PROVALCAL_02661 [Providencia alcalifaciens DSM 30120] gi|212685688|gb|EEB45216.1| hypothetical protein PROVALCAL_02661 [Providencia alcalifaciens DSM 30120] Length = 564 Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 80/337 (23%), Positives = 150/337 (44%), Gaps = 47/337 (13%) Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H IP L+K+ +++ ++ + W L+PK+DG +T+ YE G Sbjct: 109 VKHPIPHTGLKKL-EFKEIAPWLESRHEVW-----------LQPKVDGVAVTLHYENGHL 156 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 V RGDG G + I IP+ +S I + I ++GE++ N+ + + I Sbjct: 157 VSMISRGDGSKGLNWREKADFIQGIPKTIS--IKQSIVLQGELFWKLNEHV----QKIDG 210 Query: 209 GRKPYANPRNAASGILRRLN-PTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFP 267 G+ N R+ +G L R + P +T + F+ S + + L ++ LGF Sbjct: 211 GQ----NARSKVAGWLMRKDMPAQVTDDIGVFIWSWPDNSTPMS----QQLSELAMLGFD 262 Query: 268 VNNGVRQANTF---HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 + R ++ I + + SI ++P+ DG+V K F RA W Sbjct: 263 LAQ--RYSHPIVESQSIAQWRDHYYSI--SMPFATDGVVLK--SFPTPSSSAWRANQNSW 316 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 I+ K+ K + ++D+ ++GR+G++ +A +EPV I ++ L + + K Sbjct: 317 SIAWKYPLKSIVSDVVDLTFRVGRSGVVNVIANIEPVRIDDKKVSKIRLGSLNSWK---- 372 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +D+ VGD++ + +G P + +I ++ Sbjct: 373 -------QKDVLVGDKIQLTLSGHGAPLMEKVIWRQK 402 >gi|238750790|ref|ZP_04612288.1| DNA ligase B [Yersinia rohdei ATCC 43380] gi|238710934|gb|EEQ03154.1| DNA ligase B [Yersinia rohdei ATCC 43380] Length = 563 Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 124/592 (20%), Positives = 240/592 (40%), Gaps = 93/592 (15%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH--AFPDLARSED 70 S ++A E++ L ++++ D Y+Q ++ D YD L+ + PD A + Sbjct: 29 SEKRASDEINILVKQLNQLDVAYHQQGISLLDDDIYDQLQDKLHGWRECLGLPDKANN-- 86 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 I G+ K+ H + L+K+ + L +++ W + Sbjct: 87 -----TLIPGDG-----KLLHPVAHTGLKKLKDENALADWMSGREDLW-----------V 125 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y+ G+ + RG+G G + + I IP+ +S+ P + ++GE Sbjct: 126 QPKVDGVAVTLVYQAGELIQLLSRGNGLKGLNWTDKAPFISAIPQHISMA-PPWLTLQGE 184 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + + N R + +G L R + + L F+ + Sbjct: 185 LFLQMDGHQQVQSGGV--------NARASVAGALMRKTMSPLLANLGVFIWAWPDGPKNL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + +LQ+M GFP+ + T V + + ++ LP+ DG+V + +E Sbjct: 237 VE-KTTLLQEM---GFPLAAKYSKPVTSSQDVMQWRDF-WYQTPLPFVTDGVVIRQEEEP 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 + RA S W ++ K+ Q +T + DI IGRTG +T V ++ PV I Sbjct: 292 AGRYW--RAASGNWSVAWKYPPLQKTTEIQDIHFTIGRTGKITVVLQVAPVKI------- 342 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII--VNERHPDAQPF 428 ++ I+ ++ + +I VGD+V + AG+ IP++ +++ V++R P Sbjct: 343 ----DDKQIRRVNIGSLALWRQWNIAVGDQVTITLAGQGIPRLENVVWRVSQREYLIPP- 397 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 F P+ R++ L C Q L RL ++ +G+ Sbjct: 398 EKDKFHPLSCFRLLP------------------LECEPQFLSRLAWLSGPKGLDMRNVGR 439 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 F++ I +L Q I + G G V +Y R Sbjct: 440 G----FWREIVRHGLINDMVGWLSLTAEQ------IATVPGIGRVRAEKIYQQFQNTRLK 489 Query: 549 SLERFIFSLGI-------RHVGAEIARSLAKYYLSY---QNFAQEINNIIAH 590 +++ +LG H RS+A++ L A++IN+ ++H Sbjct: 490 PFSQWLPALGFPLGGVVDSHWHPLQQRSIAEWRLISGIGAVRAKQINHFLSH 541 >gi|213622411|ref|ZP_03375194.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 445 Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 106/498 (21%), Positives = 195/498 (39%), Gaps = 83/498 (16%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++G Sbjct: 9 VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQG 67 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + R N R+ A+G+L R + L F+ Sbjct: 68 EIFLQREGHIQQ--------RMGGMNARSKAAGMLMRQDNASALNSLGIFIWA------- 112 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + G M +++ L G + V +E++ R S LP+ DG+V Sbjct: 113 WPDGPANMPERLSQL---AKAGFSLTKKYSLAVKDASEVERARQSWLTSALPFVTDGVVI 169 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 ++ + + R W+ + K+ ++ I +G++G +T VA L PV + Sbjct: 170 RMAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILD 227 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV--NERH 422 + + + +K +A DI GD++LV AG+ IP++ +++ ER Sbjct: 228 DKRVQRVNIGS---VKRWEAW--------DIAPGDQILVSLAGQGIPRLDEVVWRSRERS 276 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 P S N T +A C Q + RL SR A Sbjct: 277 KPVPPGS--------------HFNSLTCFYASA-------TCQEQFISRLVWLGSRSALG 315 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 ++G+G+ ++ F IF+ ++ +I N G ++ Sbjct: 316 LDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANTPGVAKGKSEQIWRQF 365 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 N R S R+I ++ I A + S + + ++ W L P Sbjct: 366 NLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQLLMRTEQHWRQL---P 412 Query: 603 LVGDIIAQAIVEFYQNPR 620 G+ A ++++ NP+ Sbjct: 413 ATGERRAGRVIDWRNNPQ 430 >gi|145640786|ref|ZP_01796369.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] gi|145274712|gb|EDK14575.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21] Length = 150 Score = 88.6 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 11/143 (7%) Query: 579 NFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR 638 N A + A + + L +VP VG+++A I F++ N+ VE L+ + G Sbjct: 8 NLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQ-----GV 62 Query: 639 HEKNV----SSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 H + V +SE ++K +V TGTL ++ R++A+ + QLGA VS +S KTD +I GD Sbjct: 63 HWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGD 122 Query: 693 NPGSKLEKAQQLGVKIMNEEQFL 715 GSKL KAQ+L + ++ EE+FL Sbjct: 123 AAGSKLAKAQELNITVLTEEEFL 145 >gi|153834101|ref|ZP_01986768.1| DNA ligase [Vibrio harveyi HY01] gi|148869566|gb|EDL68561.1| DNA ligase [Vibrio harveyi HY01] Length = 124 Score = 88.2 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 48/124 (38%), Positives = 76/124 (61%), Gaps = 2/124 (1%) Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFT 655 +I V +G I+A+ I F+ +N V+ LL + P I ++ V +E K +V T Sbjct: 1 MIEVQDIGVIVAKHITTFFGEEKNQAVVQDLLAQGINWPEIAAPQEGVELPLEGKTVVLT 60 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL ++ R +A+E + LGA V+ +S+KTDI+ G+N GSKL KAQ+LG++I E+ L Sbjct: 61 GTLSQLGRSEAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLL 120 Query: 716 FLLQ 719 L++ Sbjct: 121 NLMK 124 >gi|77407286|ref|ZP_00784228.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B] gi|77174105|gb|EAO77032.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B] Length = 223 Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 116/246 (47%), Gaps = 42/246 (17%) Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S +V A RC L C Q ERL HF SRDA NI G G Sbjct: 4 PKLCPSCGSELVHFEGE------VALRCINPL-CPNQIKERLAHFASRDAMNITGFGPSL 56 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL---GFGDVSVTNLYDSINKRRN 547 ++ F A I ADI+ L IEN+L G + S T +Y +I + Sbjct: 57 VEKLF----DAHLIADVADIYRLS---------IENLLTLDGIKEKSATKIYHAIQSSKE 103 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 S E+ +F LGIRHVG++ +R L + + + + +Q IA + +G + Sbjct: 104 NSAEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIA----------SIDGLGGV 153 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSP---SIGRHEKNVSSEIENKKL--VFTGTLQKIQ 662 IA+++ F++ V+ LL+E++ + K VS++ + L V TG L+K+ Sbjct: 154 IAKSLHTFFEKEE----VDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMT 209 Query: 663 RHKAQE 668 R++A+E Sbjct: 210 RNEAKE 215 >gi|320185697|gb|EFW60455.1| DNA ligase , LigB [Shigella flexneri CDC 796-83] Length = 411 Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 92/416 (22%), Positives = 171/416 (41%), Gaps = 67/416 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+ +Q+I DD Y++ K + D YD L R F R + Sbjct: 7 AWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 65 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 66 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 104 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 105 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 163 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 164 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 215 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 + + L+++ GF + T+ V +E+ +R + LP+ DG+V + Sbjct: 216 S----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVR 265 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L V Sbjct: 266 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVM 320 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 321 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVV 364 >gi|312831438|emb|CAP78100.2| Uncharacterized DNA ligase-like protein yicF [Escherichia coli LF82] Length = 505 Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 101/473 (21%), Positives = 185/473 (39%), Gaps = 88/473 (18%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R +D L FV Sbjct: 125 EIFLQRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA------- 169 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + G + M +++ L G T+ V +E+ +R + LP+ DG+V Sbjct: 170 WPDGPHLMTDRLKDL---ATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVV 226 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 227 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 281 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + I + G V R DI GD++LV AG+ IP++ D++ Sbjct: 282 MLDDKKIQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 329 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 330 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 367 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 368 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 415 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 416 AQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468 >gi|332089533|gb|EGI94637.1| NAD-dependent DNA ligase adenylation domain protein [Shigella boydii 3594-74] Length = 417 Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 92/416 (22%), Positives = 171/416 (41%), Gaps = 67/416 (16%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+ +Q+I DD Y++ K + D YD L R F R + Sbjct: 13 AWSPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPR-DV 71 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 72 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMRERSDLW-----------V 110 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 111 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 169 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 170 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLM 221 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYK 305 + + L+++ GF + T+ V +E+ +R + LP+ DG+V + Sbjct: 222 S----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVR 271 Query: 306 VDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 K+ R P W+++ K+ + I +G++G ++ VA L V Sbjct: 272 A-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLASVM 326 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 327 LDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVV 370 >gi|325662259|ref|ZP_08150874.1| hypothetical protein HMPREF0490_01612 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471511|gb|EGC74732.1| hypothetical protein HMPREF0490_01612 [Lachnospiraceae bacterium 4_1_37FAA] Length = 260 Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 124/258 (48%), Gaps = 23/258 (8%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +EQ ++ + L Q ++ YYQ +K I+ + EYD L D + +L + N Sbjct: 1 MEQKKQRMQELVQLLNQAGKAYYQDAKEIMSNHEYDRL---YDELLVLEQELGITM-ANS 56 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +G E+ L K H P LSL+K + L++F+ +KK + K Sbjct: 57 PTVNVGYEVLSELPKERHEKPMLSLDKTKETDRLKEFVG------EKKA------VISWK 104 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 +DG I + YE G+ A RG+G GE ++ + +P ++ E+I +RGE I Sbjct: 105 LDGLTIVLTYENGELKKAVTRGNGEVGEVITNNAKVFQNVPLRIAYR-GELI-LRGEAVI 162 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEI-F 250 DF +N+E+ V K Y NPRN SG +R+LN +IT R + F+ L K + F Sbjct: 163 GYRDFEKINEEIEDVDAK-YKNPRNLCSGSVRQLN-NEITARRNVQFYAFSLVKAEGVDF 220 Query: 251 AKGQYEMLQKMRCLGFPV 268 + L+ ++ GF V Sbjct: 221 QNSRNIQLEWLKEQGFDV 238 >gi|332997449|gb|EGK17065.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri K-218] Length = 505 Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 98/466 (21%), Positives = 186/466 (39%), Gaps = 74/466 (15%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R +D L FV ++ Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 176 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P ++R NP T + C Q + RL S+ ++ Sbjct: 336 TPP----------ENR----FNPLTCYFASD-------VCQEQFISRLVWLGSKQVLGLD 374 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 375 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQF 422 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N RN R++ ++GI + A RS ++ S + F Q++ Sbjct: 423 NLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468 >gi|207110372|ref|ZP_03244534.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1] Length = 108 Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 69/109 (63%), Gaps = 11/109 (10%) Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 +DG+V V+E +QK+LG +SP++ ++KF + T+++ + Q+GR+G +TPVA L Sbjct: 11 LDGMVIVVNELGIQKELGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALL 70 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 EP+ I GA++T ATLHN I+ ++I + DRV+V R+G Sbjct: 71 EPIEIAGAMVTKATLHNYSEIE-----------KKNIMLNDRVVVIRSG 108 >gi|322835054|ref|YP_004215081.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602] gi|321170255|gb|ADW75954.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602] Length = 565 Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 124/626 (19%), Positives = 231/626 (36%), Gaps = 98/626 (15%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRR----CDAIAHAFPDLARSED 70 E+ +E L +++ D Y+Q I DS YD L+++ + P+L Sbjct: 33 ERLTQETHHLTAQLTQWDAAYHQSGSSPIEDSVYDHLRQKQRLWLQCASQPVPELTVPAS 92 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + + TH + L K+ + + ++ W + Sbjct: 93 DDA--------------EFTHPVAHTGLHKMKDKHAVANWMQGRKNLW-----------V 127 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PKIDG +++ Y G+ RGDG G++ + +IP IP + PE+I ++GE Sbjct: 128 QPKIDGVAVSLIYRYGQLAALVSRGDGEKGQNWTVKAASIPAIPLHIPDMSPELI-LQGE 186 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 +Y+ L + A G N R+ +G + R + +D+ + F+ + Sbjct: 187 LYL-----LMTGHQQSADGG---MNARSKVAGAMMRASASDLLKQTGIFIWSWPDGPTLM 238 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 A + L+K+ GFPV A + V + E LP+ DG+V + E Sbjct: 239 A----DHLEKLSQFGFPVVAQFTHAVSAVEDVEKWRE-DWFHQPLPFATDGVVVRQQEEP 293 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 K + + W ++ K+ + T + I GR+G +T + L+P+ + L++ Sbjct: 294 AGKYW--QNKPAVWAVAWKYPPARQLTDVTGITTTTGRSGKVTVILNLKPLRLDDKLVSK 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ++ + + D+ GD+V V AG+ IP++ ++ P Sbjct: 352 VSVGSVSRFRQW-----------DVLPGDQVAVALAGQGIPRLDEVTWRVSKRTEMPLPE 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ + + P+ G C Q L RL +A ++ G G Sbjct: 401 PT-----RYNALSCFTPEPG-------------CMQQFLSRLIWLSGPEALDMAGFGGAT 442 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + PAD +L + ++ + G G L I+ R S Sbjct: 443 WQKLLDAS--------PAD--SLISWLSFNEKELAAVPGIGVKQAQKLMAQIHLAREKSF 492 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R++ ++G + L + Q N + + DW +G A Sbjct: 493 RRWLSAIG-----------FPSFALGFAERQQSWNRLKQLTSRDWE---MTEGIGRKRAA 538 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSI 636 + +F +P EAL + P+ Sbjct: 539 QVFDFIHHPDVEILTEALRQAQLPAF 564 >gi|281180692|dbj|BAI57022.1| putative DNA ligase [Escherichia coli SE15] Length = 505 Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 100/473 (21%), Positives = 185/473 (39%), Gaps = 88/473 (18%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R +D L FV Sbjct: 125 EIFLKRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA------- 169 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + G + M +++ L G T+ V +E+ +R + LP+ DG+V Sbjct: 170 WPDGPHLMTDRLKDL---ATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVV 226 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 227 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPV 281 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 282 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 329 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 330 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 367 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 368 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 415 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 416 AQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468 >gi|320193847|gb|EFW68480.1| DNA ligase, LigB [Escherichia coli WV_060327] Length = 505 Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 100/473 (21%), Positives = 185/473 (39%), Gaps = 88/473 (18%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R +D L FV Sbjct: 125 EIFLQRKGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWA------- 169 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + G + M +++ L G T+ V +E+ +R + LP+ DG+V Sbjct: 170 WPDGPHLMTDRLKDL---ATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVV 226 Query: 305 KVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 + K+ R P W+++ K+ + I +G++G ++ VA L PV Sbjct: 227 RA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPV 281 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN- 419 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 282 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRG 329 Query: 420 -ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ER P + F S S V C Q + RL S Sbjct: 330 AERTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGS 367 Query: 478 RDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSV 535 + ++G+G+ ++ + FS + + +++N G Sbjct: 368 KQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKS 415 Query: 536 TNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 416 AQLWHQFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468 >gi|300907689|ref|ZP_07125317.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 84-1] gi|301303881|ref|ZP_07210000.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 124-1] gi|300400625|gb|EFJ84163.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 84-1] gi|300840844|gb|EFK68604.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 124-1] gi|315254034|gb|EFU34002.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 85-1] Length = 505 Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 98/471 (20%), Positives = 188/471 (39%), Gaps = 84/471 (17%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 176 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVY 304 + + L+++ GF + T+ V +E+ +R + LP+ DG+V Sbjct: 177 MS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGVVV 226 Query: 305 K-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 + E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 227 RGAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVML 283 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--E 420 + + G V R DI GD++LV AG+ IP++ D++ E Sbjct: 284 DDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAE 331 Query: 421 RHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R P + F S S V C Q + RL S+ Sbjct: 332 RTKPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQ 369 Query: 480 AFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 ++G+G+ ++ + FS + + +++N G Sbjct: 370 VLGLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQ 417 Query: 538 LYDSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 L+ N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 418 LWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468 >gi|265763497|ref|ZP_06092065.1| NAD-dependent DNA ligase [Bacteroides sp. 2_1_16] gi|263256105|gb|EEZ27451.1| NAD-dependent DNA ligase [Bacteroides sp. 2_1_16] Length = 652 Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 160/713 (22%), Positives = 288/713 (40%), Gaps = 124/713 (17%) Query: 36 YQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLS-LFKVTHSIP 94 Y+ P I D+EYDA +L ++ DP+ K +S K IP Sbjct: 24 YRMGAPEISDAEYDAEI-----------ELLKTLDPDNEWFKHTEPAFVSETRKRALPIP 72 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 SL K+ +I +L+K+ Y K + + PK+DG + +Y L Sbjct: 73 MKSLNKVKDISELKKW----YMSLGLKGNAGV--VCMPKLDGLSL---------LYNELT 117 Query: 155 GDGHS-------GEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIA 207 G+ +S G+D + +A S GE I+++D+ E Sbjct: 118 GEAYSRGGIENEGQDCTNHYQASTQCYNPAS----SFHYTFGEFVINRSDW-----EQHF 168 Query: 208 VGRKP------YANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 G++ + +PRN A+G+L R P D + +FF +G+ ++S + + L + Sbjct: 169 HGKRSKFTGDIFKSPRNTAAGLLNRDEPCDYLEHASFFRYGVDESS-LHDYNNFHSLIET 227 Query: 262 RCLGFPVNNGVRQANTFH-GIVSYYNE---MKSIRS-TLPYDIDGLVYKVDEFSLQKQLG 316 C N +Q + +H + NE M + + Y IDG+V VD+ L + +G Sbjct: 228 IC------NIYQQEHLYHFAFIDELNEELLMNLFKEWSKIYPIDGIVIYVDDLRLWEVIG 281 Query: 317 ERARS--PRWMISHKFAEKQAS--TRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 S P + I++K + S T + I ++ ++G L PV +E V+ G + N T Sbjct: 282 RHQTSGNPLYAIAYKHPDFTESFETTVKGIVWKVSKSGALKPVVNIEMVDTGDCNMENPT 341 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP-FSFP 431 +N +I +I G +LV R+G VIPK++ + + + + Sbjct: 342 GYNAGWIN-----------DHEIAKGAEILVTRSGGVIPKILSTLSPATQEEQEKLWDEM 390 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 S CP C S + + N C +C QL ++ F E +G++ L Sbjct: 391 SECPHCGSSTMWNEN-------HIELCCTNPSCPGVQLAKIIFFYL--TCGAENMGEETL 441 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 F + F+ IPA + + + I GFGD S++N+ N++ ++ Sbjct: 442 SKIFNA---GFT-SIPAIL-------NVTFNDLIKIEGFGD-SISNIILENNRKIMQGVD 489 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 L ++ + + K + Q E+ +++D S + + Sbjct: 490 -----LATLMQASDCFKGIGK--IKAQKILDEM------DDEDLCSFCQGWYINHEPDVQ 536 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIG-RHEKNVSSEIENKKLVFTGTLQKI-------QR 663 +F P V+ LL P + E + ++ K V G + + + Sbjct: 537 SEDFKNCP---ITVQNLLLGYFPFMAFLEETKIPYKLSPKTAVLEGKCKGLSICVSGFRD 593 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG--SKLEKAQQLGVKIMNEEQF 714 +E +T G + + +S+KT ++V D SK+ KA+ LG+ I++ E+F Sbjct: 594 SNLEEVITNEGGKIVSGVSKKTTHLVVKDKSANSSKISKAKLLGIPILSIEEF 646 >gi|261884680|ref|ZP_06008719.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 212 Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 40/241 (16%) Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 NI+GLG ++ ++ I DI + R + S +E GF ++NL Sbjct: 1 MNIDGLGDAIVELLYQK-------NIIKDIADIYRLDELSFIGLE---GFKTKKISNLLS 50 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +IN + +L++FI SLGI H+G A+ +A Y D WL L Sbjct: 51 AINNSKTPNLDKFIASLGIEHIGEVAAKKIANNY-----------------GDRWLELTL 93 Query: 601 VPL-----VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLV 653 L G+ +A + +EF + N+ ++ LL+ ++P + E N+ S K +V Sbjct: 94 EELLALDGFGEAMALSYLEFMR--VNLEKIKELLEFITPKMQNLELKTNIFS---GKTVV 148 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGTL + R + + + GA VS+ +S+KTD ++ G+ GSKLEKA +LGV+ ++E + Sbjct: 149 ITGTLSR-SRDEFKAELESYGAKVSSSVSKKTDFVLYGNEAGSKLEKANELGVRAIDESE 207 Query: 714 F 714 + Sbjct: 208 Y 208 >gi|332997757|gb|EGK17368.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri K-272] gi|333013292|gb|EGK32664.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri K-227] Length = 505 Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 98/467 (20%), Positives = 184/467 (39%), Gaps = 76/467 (16%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R +D L FV ++ Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 176 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 374 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 421 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N RN R++ ++GI + A RS ++ S + F Q++ Sbjct: 422 FNLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468 >gi|153831338|ref|ZP_01984005.1| DNA ligase [Vibrio cholerae 623-39] gi|148873180|gb|EDL71315.1| DNA ligase [Vibrio cholerae 623-39] Length = 159 Score = 85.5 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 5/156 (3%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + L+ L + + H YY P I D+EYD L R + A P+L S+ P+ ++ Sbjct: 6 QRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPS---LRV 62 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 GG + V H IP LSL+ ++ +L F R+ ++ F EPK+DG Sbjct: 63 GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSA--FCCEPKLDGLA 120 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 +++ YE G AA RGDG +GE+++ +R I +IP Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIP 156 >gi|323173255|gb|EFZ58884.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli LT-68] Length = 505 Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 98/467 (20%), Positives = 183/467 (39%), Gaps = 76/467 (16%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R +D L FV ++ Sbjct: 125 EIFLQREGH--IQQQMGGI------NARTKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 176 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G ++ + FS + + +++N G L+ Sbjct: 374 DGIGGAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 421 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N RN R++ ++GI + A RS ++ S + F Q++ Sbjct: 422 FNLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468 >gi|320191301|gb|EFW65951.1| DNA ligase , LigB [Escherichia coli O157:H7 str. EC1212] gi|326339852|gb|EGD63659.1| DNA ligase , LigB [Escherichia coli O157:H7 str. 1125] Length = 505 Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 97/467 (20%), Positives = 185/467 (39%), Gaps = 76/467 (16%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 176 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ ++ I +G++G ++ VA L PV + Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKK 287 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 374 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHR 421 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 422 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468 >gi|320201328|gb|EFW75909.1| DNA ligase, LigB [Escherichia coli EC4100B] Length = 505 Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 97/467 (20%), Positives = 184/467 (39%), Gaps = 76/467 (16%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 176 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 374 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 421 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 422 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468 >gi|209921119|ref|YP_002295203.1| NAD-dependent DNA ligase LigB [Escherichia coli SE11] gi|209914378|dbj|BAG79452.1| putative DNA ligase [Escherichia coli SE11] Length = 505 Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 97/467 (20%), Positives = 184/467 (39%), Gaps = 76/467 (16%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 176 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 288 VQRVNI------------GSVRRWEEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 374 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 421 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 422 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468 >gi|323182437|gb|EFZ67841.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli 1357] Length = 469 Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 97/467 (20%), Positives = 184/467 (39%), Gaps = 76/467 (16%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 30 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 88 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 89 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 140 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 141 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 194 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 195 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 251 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 252 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 299 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 300 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 337 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 338 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 385 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 386 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 432 >gi|323160743|gb|EFZ46679.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli E128010] Length = 505 Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 97/467 (20%), Positives = 184/467 (39%), Gaps = 76/467 (16%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 176 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 374 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHR 421 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 422 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468 >gi|323155299|gb|EFZ41482.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli EPECa14] gi|323177651|gb|EFZ63235.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli 1180] Length = 505 Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 97/467 (20%), Positives = 184/467 (39%), Gaps = 76/467 (16%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R + +D L FV ++ Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQL 176 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 374 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHR 421 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N R R++ ++GI + A RS ++ S + F Q++ Sbjct: 422 FNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468 >gi|217032017|ref|ZP_03437518.1| hypothetical protein HPB128_187g44 [Helicobacter pylori B128] gi|216946327|gb|EEC24933.1| hypothetical protein HPB128_187g44 [Helicobacter pylori B128] Length = 157 Score = 84.0 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 96/170 (56%), Gaps = 15/170 (8%) Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I +LGI H+G +++LA+Y L N++ + ++L + G +A+++V Sbjct: 2 INALGIEHIGKGASKTLARYGL----------NVLEKSEAEFLEM---EGFGVEMARSLV 48 Query: 614 EFY-QNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 FY N I ++ LL + + ++ SS NK +V TGTL K ++ AQ + Sbjct: 49 NFYASNQEFIRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEYAQ-MLEN 107 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA +S+ +S KTD +I G+NPGSKL A++ GV ++NEE+ L L++ + Sbjct: 108 LGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKELD 157 >gi|332996128|gb|EGK15755.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri VA-6] Length = 505 Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 97/467 (20%), Positives = 183/467 (39%), Gaps = 76/467 (16%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R +D L FV ++ Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 176 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV G+ IP++ D++ ER Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLGGQGIPRIDDVVWRGAERTKP 335 Query: 425 AQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P + F S S V C Q + RL S+ + Sbjct: 336 TPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGL 373 Query: 484 EGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +G+G+ ++ + FS + + +++N G L+ Sbjct: 374 DGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQ 421 Query: 542 INKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N RN R++ ++GI + A RS ++ S + F Q++ Sbjct: 422 FNLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468 >gi|323166867|gb|EFZ52606.1| NAD-dependent DNA ligase adenylation domain protein [Shigella sonnei 53G] Length = 505 Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 103/503 (20%), Positives = 192/503 (38%), Gaps = 97/503 (19%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R +D L FV ++ Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 176 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRA-- 228 Query: 309 FSLQKQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 K+ R P W+++ K+ + I +G++G ++ VA L PV + Sbjct: 229 ---AKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDD 285 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERH 422 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 286 KKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERT 333 Query: 423 PDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 P + F S S V C Q + RL S+ Sbjct: 334 KPTPPENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVL 371 Query: 482 NIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 ++G+G+ ++ + FS + + +++N G L+ Sbjct: 372 GLDGIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLW 419 Query: 540 DSINKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDW 595 N R R++ ++GI + A RS ++ S + F Q Sbjct: 420 HQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQ------------- 466 Query: 596 LSLIRVPLVGDIIAQAIVEFYQN 618 R+P G A+ ++E+ +N Sbjct: 467 ----RLPGTGSGRARQVIEWKEN 485 >gi|313647479|gb|EFS11929.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri 2a str. 2457T] gi|332749898|gb|EGJ80310.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri K-671] gi|332764151|gb|EGJ94388.1| DNA ligase [Shigella flexneri 2930-71] gi|333012849|gb|EGK32226.1| NAD-dependent DNA ligase adenylation domain protein [Shigella flexneri K-304] Length = 505 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 97/466 (20%), Positives = 185/466 (39%), Gaps = 74/466 (15%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I + + +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGPLANST-LQG 124 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+++ + + +M + N R +G++ R +D L FV ++ Sbjct: 125 EIFLQREGH--IQQQMGGI------NARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQL 176 Query: 250 FAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK-VD 307 + L+++ GF + R + NE ++ LP+ DG+V + Sbjct: 177 MT----DRLKELATAGFTLTQRYTRAVKNADEVARVRNEW--WKAKLPFVTDGVVVRGAK 230 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 E + L +A W+++ K+ + I +G++G ++ VA L PV + Sbjct: 231 EPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKK 287 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPD 424 + + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 288 VQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKP 335 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 P ++R NP T + C Q + RL S+ ++ Sbjct: 336 TPP----------ENR----FNPLTCYFASD-------VCQEQFISRLVWLGSKQVLGLD 374 Query: 485 GLGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 G+G+ ++ + FS + + +++N G L+ Sbjct: 375 GIGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQF 422 Query: 543 NKRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 N RN R++ ++GI + A RS ++ S + F Q++ Sbjct: 423 NLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 468 >gi|117306975|emb|CAL25732.1| hypothetical protein [Bacillus halodurans] Length = 143 Score = 82.4 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 49/121 (40%), Positives = 74/121 (61%), Gaps = 3/121 (2%) Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSE--IENKKLVF 654 LI VP VGDI+A +IV F+++ N +V+ LL+ V P K VS++ K +V Sbjct: 8 LIAVPDVGDIVADSIVSFFEDEVNKMSVQRLLEFGVHPQPIEKPKPVSTDSYFYGKTVVL 67 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TGTL + R +A + GA V+ +S+KTD++I G+ GSKL KA+QLG+ ++ +E Sbjct: 68 TGTLHLMTREEATAKLEACGAKVTGSVSKKTDLVIAGEKAGSKLAKAEQLGIPVITDENE 127 Query: 715 L 715 L Sbjct: 128 L 128 >gi|167751779|ref|ZP_02423906.1| hypothetical protein ALIPUT_00019 [Alistipes putredinis DSM 17216] gi|167660694|gb|EDS04824.1| hypothetical protein ALIPUT_00019 [Alistipes putredinis DSM 17216] Length = 323 Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 112/238 (47%), Gaps = 21/238 (8%) Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +IEGLG++ ++ F++ + AD++ L+ Q ++ G+ S N+ Sbjct: 1 MDIEGLGEETVELLFENG----LLHDIADLYDLRAEQLACLPRL------GEKSAENIIR 50 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 SI + +R +F+LGIR VG A+ LA ++ + + + H + LI Sbjct: 51 SIRGSVEVPFQRVLFALGIRFVGETTAKYLAAHFRTL--------DAVMHATRE--ELIE 100 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VG IA AI++++ + N+ +E L K + H+ S + K V TG Sbjct: 101 ADEVGGKIADAIIDYFADAENLRIIERLRKAGLQTEAAHKALESESLAGKNFVITGRFSG 160 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFL 717 R + +E + G A +S + ++ G G K++KA QLGV+++ EE+ L + Sbjct: 161 HSRDELKELIEAHGGKNLAGVSGNVEFLVAGKKIGPGKIQKATQLGVRLIPEEELLAM 218 >gi|213427119|ref|ZP_03359869.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 93 Score = 80.9 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 35/87 (40%), Positives = 56/87 (64%) Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQ 334 A I ++ E+ R LPYDIDG+V KV++ + Q++LG ++P+W +++KF K+ Sbjct: 6 AENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFPVKE 65 Query: 335 ASTRLLDIDIQIGRTGILTPVARLEPV 361 +LL +D +GRTG++TP A L PV Sbjct: 66 KEAQLLSVDWTVGRTGVVTPTANLTPV 92 >gi|23011876|ref|ZP_00052108.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Magnetospirillum magnetotacticum MS-1] Length = 114 Score = 80.9 bits (198), Expect = 8e-13, Method: Composition-based stats. Identities = 42/112 (37%), Positives = 72/112 (64%), Gaps = 5/112 (4%) Query: 611 AIVEFYQNPRNICAVEALLKEVS--PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++++F+ P N AV ALL++V+ P H ++ K +VFTGTL+K+ R +A+ Sbjct: 5 SLIQFFSEPHNDAAVRALLEQVNTEPLASTHS---AAAFAGKTVVFTGTLEKMTRSEAKA 61 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +LGA VS +S KTD+++ G GSKL+ A++ GVK+++E+ +L +L + Sbjct: 62 TAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAERHGVKVVSEDAWLEMLAE 113 >gi|282599848|ref|ZP_05972113.2| NAD-dependent DNA ligase adenylation domain protein [Providencia rustigianii DSM 4541] gi|282567376|gb|EFB72911.1| NAD-dependent DNA ligase adenylation domain protein [Providencia rustigianii DSM 4541] Length = 557 Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 92/408 (22%), Positives = 167/408 (40%), Gaps = 82/408 (20%) Query: 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKF 148 V H +P L+K N+ ++ +I + W L+PK+DG +++ Y+ G+ Sbjct: 93 VKHPLPHTGLKKQ-NLNEITTWIAKRKEIW-----------LQPKVDGVAVSLVYDNGQL 140 Query: 149 VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV 208 V RG+G G + I L++P++I ++ V + F LN+ + Sbjct: 141 VSLISRGNGVEGLEWRKKADFI--------LDLPKVIPIKQRVILQGELFWKLNNHV--- 189 Query: 209 GRKPYA--NPRNAASG-ILRRLNPTDITRYLNFFVHGLGKTSEIFAKG---QYEMLQKMR 262 +K N R+ +G ++R+ P I + F+ + G Q L ++ Sbjct: 190 -QKQLGGLNARSKVAGWLMRKKLPEKIEDNIGIFIWA-------WPDGDLQQEVQLSRLS 241 Query: 263 CLGFPVNNGV-RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 +GF ++ Q + I+ + S + LP+ DG+V K F ++ Sbjct: 242 EIGFDLSKRYSHQVTSIEQIIQRQEDYFS--TPLPFATDGIVLK--SFPTPPSAAWQSNQ 297 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 W I+ K+ + + + + +GRTGI+ VA ++PV + +++ L + + K Sbjct: 298 NSWAIAWKYPLQNIISEITGLKFGVGRTGIVNVVASIKPVTLDAKQVSHVNLGSLNSWK- 356 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 +D+ VGD + + AG IPKV +I H D Sbjct: 357 ----------KKDLLVGDHIQLTLAGHGIPKVEQVIWRVAHRDY---------------- 390 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+T L +R + C + +E L FV+R + LGKQ Sbjct: 391 -----PETMLLEQFNRWS----CFSYSIECLPQFVAR----LTWLGKQ 425 >gi|149912310|ref|ZP_01900877.1| NAD-dependent DNA ligase [Moritella sp. PE36] gi|149804613|gb|EDM64677.1| NAD-dependent DNA ligase [Moritella sp. PE36] Length = 171 Score = 80.5 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 11/174 (6%) Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 ++ +L +F++SLGIR VG A N A ++ + A LI + VG Sbjct: 4 KHTTLAKFLYSLGIREVGEATA----------ANLANDLLTLDAIKKASVERLILISDVG 53 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRH 664 DI+A+ I F++ N+ + LL+ K S + + V TGTL I R Sbjct: 54 DIVAKHIYYFFREAHNLEVIVQLLEAGMSWDDVAVKEASQQPLLGAIYVITGTLVNISRA 113 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ + LGA V+ +S+KT ++ G GSKL KAQ+LG+ I+ E+ L LL Sbjct: 114 DAKTRLQDLGAKVAGSVSKKTTALVAGPAAGSKLTKAQELGIDILTEDDLLALL 167 >gi|33322831|gb|AAQ07151.1|AF496461_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis] Length = 128 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 18/132 (13%) Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 ++PV + G + A+LHN D + LD +R+G V + +AG++IP++ +++ Sbjct: 2 MDPVRLXGTTVARASLHNPDLLAKLD-----------VRLGXTVKLHKAGDIIPEISEVV 50 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +++R D+ P+ P+ CP C +V LN + A RC +C AQ E + HF S Sbjct: 51 LSKRPEDSVPYEVPTKCPSCGEDLVH-LNEEV-----ALRCINP-SCPAQVEEGITHFAS 103 Query: 478 RDAFNIEGLGKQ 489 R A NI GLG + Sbjct: 104 RQAMNIAGLGPK 115 >gi|289679599|ref|ZP_06500489.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae FF5] Length = 109 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 17/120 (14%) Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + NATLHN D +V R G + +GD V+++RAG+VIP+VV ++ R +A+ Sbjct: 1 VANATLHNMD---------EVARLG--LMIGDTVIIRRAGDVIPQVVQVVAERRPENARA 49 Query: 428 FSFPSFCPICQSRVVRD--LNPKTGKLV----AAHRCTGGLACSAQQLERLKHFVSRDAF 481 P CP+C S V R + GK A +RC G LAC AQ + + H+VSR A Sbjct: 50 VQVPQTCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAL 109 >gi|291335083|gb|ADD94712.1| NAD dependent DNA ligase [uncultured phage MedDCM-OCT-S09-C23] Length = 717 Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 153/677 (22%), Positives = 261/677 (38%), Gaps = 164/677 (24%) Query: 115 YRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG-----KFVYAALRGDGHSGEDVSACIR- 168 + W+KK + T+E K DG + YEK + +Y+ RG G +G+D+S I+ Sbjct: 124 FNAWKKKYPKGPY-TIEGKADGISCLLIYEKKNGTIKRTIYS--RGTGKTGKDLSRYIQN 180 Query: 169 ---AIPTIPRVLSLNIP--EIIEVRGEVYISKNDFLALNDEMIAVGRKPYA----NPRNA 219 IP + P I +RGE+ + V ++ Y+ NPRN Sbjct: 181 LRDGFNLIPSGEDFDFPPENKIVIRGELVMR-----------YRVWKRKYSDDFSNPRNI 229 Query: 220 ASG-ILRRLNPTDITRYLNFFVH-GLGKTSEIFAKGQYEMLQKMRCLGFPV--------N 269 G + ++ N TR + F + L +E +++ ++ ++ +GF N Sbjct: 230 VGGFVTKKTNSGVSTRDIEFVSYEKLVPRNET----RFDQIKTLKRMGFATVEVSQLTKN 285 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 + + + N F +KS R PY+IDGLV D+ R S + ++ Sbjct: 286 SELTEKNLFK-------ILKSFRKKSPYEIDGLVVFADD-------KVRKVSDKEVLDSA 331 Query: 330 FAEK----QASTRLLDIDIQIGRTGILTPVARLEPVNIG---------GALITNATLHNE 376 FA K A ++ ++ T L PV +PV IG GAL AT N Sbjct: 332 FAYKVNAQTAIAEVVGVEWSSSTTNALKPVVVYKPVTIGRVMEDGSIVGALYRRATAFNA 391 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 ++IK I G ++L+ R+G+VIP ++ I+ + PD P+ Sbjct: 392 NFIK-----------KNKIGPGAKLLIVRSGDVIPH-IEQILKQGKPD-----LPNKARA 434 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK---QQLDF 493 Q + + G + + + D F +E L QQ+D Sbjct: 435 AQPK---------------YNYKGHPEINFEWGDGKNRRSKLDIFAVEMLDDAKIQQMDL 479 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL----YDSINKRRNIS 549 FF RQ+ NI G ++ L +DSI S Sbjct: 480 FFSGG-----------------RQKRGM----NIKGIAKKTLRQLFQEGFDSITSILQAS 518 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN---------------------NII 588 E +LG V A I +++ + + + + +Q + I+ Sbjct: 519 EEDLAEALGKPGVAANIKKAIDERFSTPVDLSQIMGASQVFPHVRTKTATKIIAKYPKIM 578 Query: 589 AHNNDDWLSLIRVPLVG----DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVS 644 N + + V VG D A A+ F R+ ++ K V+ +K S Sbjct: 579 KMNAKELKKIKDVSGVGQETLDGFAAAMPGFKLFLRDNPQIKIASKSVT------KKPTS 632 Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV---GDNPGSKLEKA 701 ++++ K VFTGT+ K++R AQ V +G L + D +++ G KL +A Sbjct: 633 NKLQGKIFVFTGTMDKMRREDAQNLVEDMGGKAPGTLKKNVDFLVIGDKGGAGKKKLAQA 692 Query: 702 QQLGVKIMNEEQFLFLL 718 ++ I++E FL ++ Sbjct: 693 EKFDTPIISETDFLTMI 709 >gi|15078917|ref|NP_149668.1| 205R [Invertebrate iridescent virus 6] gi|82012211|sp|Q91FW5|VF205_IIV6 RecName: Full=Putative DNA ligase 205R gi|15042287|gb|AAK82067.1|AF303741_205 205R [Invertebrate iridescent virus 6] Length = 615 Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 152/712 (21%), Positives = 281/712 (39%), Gaps = 159/712 (22%) Query: 32 DDCYYQYSKPIILDSEYDALKRRCDAI-AHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 D Y+ K I+ D+EYD L + + P +++++ P Sbjct: 29 DHFYFNTEKEILTDNEYDILAEQLQSTNVGCSPLISKTDLP------------------- 69 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 + SL+K++N ++L +I ++ S + ++ K+DG I + K + Sbjct: 70 --LWMGSLDKVYNDKELNLWIKKVA---------SDKYIIQCKLDGVSCLIINKDNK-LK 117 Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 A RG+G G D+S I+ + +P I +R E+ I K F N + + Sbjct: 118 AYTRGNGKVGTDISHLIKYF-----IKDKCLPNNIALRCEIIIKKETF---NQKY----K 165 Query: 211 KPYANPRNAASGILRR---------LNPTDITRY--LNFFVHGLGKTSEIFAKGQYEMLQ 259 ++NPR+ SG++ R LN + Y +NF V+ K Q E+++ Sbjct: 166 HAFSNPRSFVSGVVNRKQENIVISELNDLCLIAYELINFPVNEYQKN----ILTQIEIIE 221 Query: 260 KMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERA 319 ++ + F N +N F + N K +++ +++DGLV + ++ G Sbjct: 222 QLNFIQFV--NFKTISNEFLTQKALSNLFKEMKNNSLFEMDGLVILANTPYIRVTEG--- 276 Query: 320 RSPRWMISHKF-AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +P+ I+ K + ++ I+ +G+TG+ TP + P I G ++ T N +Y Sbjct: 277 -NPKHSIAFKVRGDNVKEAKVTFIEWNVGKTGVFTPKVHIVPTEINGTTVSCFTGFNANY 335 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 + + +G I G +LV RAG+ IP+++ + + F Sbjct: 336 L--------IEKG---IGEGAIILVTRAGDAIPQIIGV----KQTGVLTF---------- 370 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 PK + R + + ++++ HFV Sbjct: 371 --------PKDYEWKGDCRIVEKIESKERIIKQILHFVE--------------------- 401 Query: 499 DPAFSIRIP-ADIFTLQRRQQTSTTKIE--------NILGFGDVSVTNLYDSINKRRNIS 549 S+ IP T+ + T IE ++L FG + +Y+SI K Sbjct: 402 ----SVDIPYIKEATINKLYNNGCTSIELFLKLTQKDLLLFGPKLSSTIYNSIQKSFEAP 457 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 +E+F+ G G I K L Q + N+ N D + L+ + +G A Sbjct: 458 IEKFL--SGYNAFGDYIGEK--KILLLLQKYP----NLFELENLDAIDLVSIEGIGSKTA 509 Query: 610 QAIVEFYQNPR---NICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK--IQRH 664 I + + N + N L K V H + + +E K+ +GT IQ Sbjct: 510 TQIKQHFINAKLIYNNIIQNKLFKGV-----LHTPSKQNTVELFKVCVSGTRDPLFIQEL 564 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIV--GDNPGSKLEKAQQLGVKIMNEEQF 714 K + G V+S +++K ++IV + +K++KA +G+ I+ E F Sbjct: 565 KNR------GFVLSDNITKKVKVLIVKNSNEETTKVKKANSVGITILTLEDF 610 >gi|297520938|ref|ZP_06939324.1| NAD-dependent DNA ligase LigB [Escherichia coli OP50] Length = 312 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/297 (22%), Positives = 132/297 (44%), Gaps = 41/297 (13%) Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + + Sbjct: 35 LWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-L 93 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTS 247 +GE+++ + + +M + N R +G++ R + +D L FV Sbjct: 94 QGEIFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGP 145 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGL 302 ++ + + L+++ GF + T+ V +E+ +R + LP+ DG+ Sbjct: 146 QLMS----DRLKELATAGFTLT------QTYTRAVKNADEVARVRNEWWKAELPFVTDGV 195 Query: 303 VYK-VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 V + E + L +A W+++ K+ + I +G++G ++ VA L PV Sbjct: 196 VVRAAKEPESRHWLPGQA---EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPV 252 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDII 417 + + + G V R DI GD++LV AG+ IP++ D++ Sbjct: 253 MLDDKKVQRVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVV 297 >gi|32396678|gb|AAP49296.1| NAD-dependent DNA ligase [Meiothermus ruber] Length = 120 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 216 PRNAASGILRRLNP-TDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274 PRNAA+G LR+ +P R L +G+G+ + Q E+L+K+ LGF V+ + Sbjct: 2 PRNAAAGSLRQKDPRISAKRGLRGLFYGVGRPESLGVGTQQELLEKLGQLGFSVDPHYQV 61 Query: 275 ANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 GI Y M + R +LP++ DG+ K++ SL +LG A++PR+ I++KF Sbjct: 62 VRGVEGIEQGYQAMLAARKSLPFEADGVTVKLNNLSLWSELGYTAKTPRFAIAYKF 117 >gi|149198973|ref|ZP_01876014.1| NAD-dependent DNA ligase [Lentisphaera araneosa HTCC2155] gi|149137968|gb|EDM26380.1| NAD-dependent DNA ligase [Lentisphaera araneosa HTCC2155] Length = 647 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 93/388 (23%), Positives = 161/388 (41%), Gaps = 66/388 (17%) Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD---DNSIFFTLEP 132 +K+G E+ + KV ++P SL KI K ++ + + K D I T P Sbjct: 44 DKVGYEIEKN--KVELAVPMGSLNKI-------KTQAEVFDWSKSKSIPLDTEICVT--P 92 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGE 190 K DG + + + G + A RGDG G+DV T+ + L +P+ + GE Sbjct: 93 KYDGLSLLVYFVDGIYKGAYTRGDGMFGQDVGEHF----TVNPLCDLRLPQDFTGYLIGE 148 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF 250 + + F E + NPRN +G+L R + + + +G+ Sbjct: 149 CIMDEAKFQTKYSEK-------FKNPRNMVAGLLSRKTLSRELADVCYVAYGVRSAQMAH 201 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYY--NEMKSIRSTLPYD------IDGL 302 + Q E N + + + Y ++K YD DGL Sbjct: 202 KQDQVEF----------CNRYINAQWKYKVLCPLYKLEDLKDAELQKVYDSETRFQCDGL 251 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKF---AEKQASTRLLDIDIQIGRTGILTPVARLE 359 V ++++ L Q+G+ S + + ++ + + ++ QI + G PV R+E Sbjct: 252 VLEINDSDLFHQIGKETNSLNPGAARAWKPESDDSLPSIVKEVVWQISKNGAAKPVIRIE 311 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 P+++ G I+N T N +I + SG I G V + R+G+VIPKV+ + Sbjct: 312 PIDLAGVTISNVTGINARFI---EDSG--------IAKGATVTIIRSGDVIPKVIGV--- 357 Query: 420 ERHPDA-QPFSFPSFCPICQSRVVRDLN 446 P+A + P CP C+S +V + N Sbjct: 358 ---PNAIENVDLPKQCPSCESELVWNEN 382 >gi|284008967|emb|CBA75857.1| NAD-dependent DNA ligase LigB [Arsenophonus nasoniae] Length = 547 Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 79/355 (22%), Positives = 148/355 (41%), Gaps = 62/355 (17%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYD---ALKRRCDAIAHAFPDLARSEDPNGPL 75 +E+ ++ E+ D+ YY + ++ D YD AL + PD ++ + P+ Sbjct: 48 REIKAINSELKRWDEAYYINGQSLVNDETYDQIFALWKHWSNCLRLPPD--KTNTLSLPI 105 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 + TH + L+KI +++ ++I + W L+PK+D Sbjct: 106 KG----------RKTHPVIHTGLKKI-TADEIARWIAGRHEVW-----------LQPKVD 143 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G T+ Y+KGK RG+G G D + +P IP+ + + ++I ++GE++ + Sbjct: 144 GVAATLVYKKGKLAALISRGNGIEGIDWTPKADFLPAIPKTIPNHATQLI-LQGELFWYQ 202 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLN-----PTDITRYLNFFVHGLGKTSEIF 250 + + IA G AN RN +G L R N I ++ + G F Sbjct: 203 TG----HQQAIAGG----ANARNKVAGWLMRKNLLVQQEEQIGIFIWSWPDGPSNMQTQF 254 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVS-----YYNEMKSIRSTLPYDIDGLVYK 305 A+ + GFP+ T ++ YYN+ +P+ DG+V K Sbjct: 255 AQ--------LERWGFPLTKRYSHLVTSVDQITQWQRYYYNQ------PMPFATDGIVLK 300 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 ++L + +A W ++ K+ + ++ + IGRTG + P+ + P Sbjct: 301 QLPYTLGQYW--QAGINNWSVAWKYPTQNRVAQVAAVKFNIGRTGKINPIIGILP 353 >gi|32396672|gb|AAP49293.1| NAD-dependent DNA ligase [Geobacillus thermodenitrificans] gi|32396682|gb|AAP49297.1| NAD-dependent DNA ligase [Bacillus coagulans] Length = 107 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 8/113 (7%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D+EYD L + AI +P+L S+ P +IGG + KVTH +P +SL ++ Sbjct: 1 DAEYDRLMQELMAIEEQYPELKTSDSPT---QRIGGPPLEAFRKVTHVVPMMSLANAFDE 57 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157 DLR F R+ +++ + E KIDG +++RYE G FV A RGDG Sbjct: 58 GDLRDFDRRV-----RQEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDG 105 >gi|32307199|gb|AAP79092.1| NAD-dependent DNA ligase [Bacillus catenulatus] Length = 107 Score = 73.2 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 8/113 (7%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D+EYD L + AI +P+L S+ P +IGG + KVTH +P +SL + Sbjct: 1 DAEYDLLMQELIAIEEQYPELKTSDSPT---QRIGGPPLEAFRKVTHRVPMMSLANAFGE 57 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157 DLR F R+ +++ + E KIDG +++RYE G FV A RGDG Sbjct: 58 GDLRDFDRRV-----RQEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDG 105 >gi|32396667|gb|AAP49291.1| NAD-dependent DNA ligase [Bacillus sp. IMG-2] Length = 107 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 8/113 (7%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D+EYD R + +P+L + P+ P ++GG + + KV H +P LSL +N Sbjct: 1 DAEYDRFMRELIELEEKYPEL---KTPDSPSQRVGGAVLDAFRKVAHRVPMLSLANAFNE 57 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157 +DLR F R+ ++ + + +E KIDG +++RYE G FV + RGDG Sbjct: 58 QDLRDFDRRV-----RQAVGDVEYVVELKIDGLAVSLRYENGLFVQGSTRGDG 105 >gi|167950972|ref|ZP_02538046.1| DNA ligase, NAD-dependent [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 256 Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 100/249 (40%), Gaps = 78/249 (31%) Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNF---------------------A 581 + + SL RF+F+LGIR VG A +LA+++ Q A Sbjct: 4 QRSKQTSLARFLFALGIREVGDATAAALARHFRDLQPLMTAERDDFIHDSGIKGVGASTA 63 Query: 582 QEINNIIAH---------NNDDWLS-------------------------------LIR- 600 Q I + +A DWL+ L+R Sbjct: 64 QAICDALAGPLPAEPLAGGLADWLAGMNVRGLNRAVAERLSERFGSLEALRQATPELLRR 123 Query: 601 -----VPLVGDIIAQAIVEFYQNPRNICAVEAL------LKEVSPSIGRHEKNVSSEIEN 649 V VG I+A IV F++ P N +E L +E +P E + + Sbjct: 124 EQRSLVEGVGPIVADHIVTFFRQPHNQEVIEKLRQVGVNWEEEAPP----ETPAEAPLLG 179 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K +V TGTL + R + + LG V+ +S+ TD +I G GSKL KAQQLGV+I+ Sbjct: 180 KTVVLTGTLSR-PRSAIKAELQALGGQVTGSVSKNTDYLIAGAEAGSKLSKAQQLGVEIL 238 Query: 710 NEEQFLFLL 718 +E LL Sbjct: 239 DEAGLARLL 247 >gi|32482045|gb|AAP49289.1| NAD-dependent DNA ligase [Bacillus sp. IMG-1] Length = 107 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 8/113 (7%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D+EYD L + AI +P+L S+ P +IGG + KV H +P +SL + Sbjct: 1 DAEYDRLMQELIAIEEQYPELKTSDSPT---QRIGGPPLEAFRKVAHPVPMMSLANAFGE 57 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157 DLR F R+ +++ + E KIDG +++RYE G FV A RGDG Sbjct: 58 GDLRDFDRRV-----RQEVGEAAYVCELKIDGLAVSVRYEDGYFVQGATRGDG 105 >gi|291545736|emb|CBL18844.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Ruminococcus sp. SR1/5] Length = 225 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 32/242 (13%) Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 NI+GL + L+ F F I DIF + R + +I + GFG S NL + Sbjct: 1 MNIDGLSEATLEKFIAR---GF-IHDFGDIFEISRYKD----EIVEMEGFGQKSYDNLME 52 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 S+ + + +L R I+SLGI ++G A+ + ++ F +++ I H + + +S Sbjct: 53 SLERAKETTLPRVIYSLGIANIGLANAKVICRH------FDNDLDR-IRHASLEEVS--D 103 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALL-----KEVSPSIGRHEKNVSSEIENKKLVFT 655 + +G +IA +V ++++ N ++ L+ +E SP + E+ E V T Sbjct: 104 IDTIGPVIAGNLVAYFRDEDNDRRLDHLMSFLHIQEDSP---KQEQI----FEGMNFVIT 156 Query: 656 GTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEE 712 G+L R +A+E + LG V+ +++KT+ +I D + SK +KA++LG+ I++EE Sbjct: 157 GSLVHFGNRSEAKELIESLGGKVTGSVTKKTNYLINNDIQSNSSKNKKARELGIPILSEE 216 Query: 713 QF 714 F Sbjct: 217 DF 218 >gi|32396687|gb|AAP49299.1| NAD-dependent DNA ligase [Bacillus circulans] Length = 108 Score = 68.6 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 7/113 (6%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNI 104 D+EYD + A+ +P+ + P+ ++GG+ + KV H IP LSL ++ Sbjct: 1 DAEYDLFMQELIALEEQYPEFKTKDSPS---QRVGGQPLDAFQKVEHRIPMLSLANAFHE 57 Query: 105 EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDG 157 DLR F R+ +++ + + + E KIDG +++RYE G FV A RGDG Sbjct: 58 GDLRDFDRRV----RQEVGDDVAYVCELKIDGLAVSVRYENGYFVQGATRGDG 106 >gi|221487771|gb|EEE26003.1| brct domain-containing protein, putative [Toxoplasma gondii GT1] Length = 1094 Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 11/117 (9%) Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V+KV+E S+Q LG RA PRW + KF + A +++ D +G+ G + VA LE Sbjct: 412 DGVVFKVNEVSVQLALGNRATGPRWAFARKFPQPFALSKIRDFVFSVGQFGSVHVVAALE 471 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 PV G + A++ + + R + VGD V V +G P +V I Sbjct: 472 PVRFGNLTVCRASVGTLETLS-----------RRQLAVGDEVYVHLSGHTTPLIVGI 517 >gi|237830775|ref|XP_002364685.1| NAD-dependent DNA ligase OB-fold domain containing protein [Toxoplasma gondii ME49] gi|211962349|gb|EEA97544.1| NAD-dependent DNA ligase OB-fold domain containing protein [Toxoplasma gondii ME49] gi|221507565|gb|EEE33169.1| DNA ligase, NAD-dependent, putative [Toxoplasma gondii VEG] Length = 1094 Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 11/117 (9%) Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V+KV+E S+Q LG RA PRW + KF + A +++ D +G+ G + VA LE Sbjct: 412 DGVVFKVNEVSVQLALGNRATGPRWAFARKFPQPFALSKIRDFVFSVGQFGSVHVVAALE 471 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 PV G + A++ + + R + VGD V V +G P +V I Sbjct: 472 PVRFGNLTVCRASVGTLETLS-----------RRQLAVGDEVYVHLSGHTTPLIVGI 517 >gi|300939287|ref|ZP_07153961.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli MS 21-1] gi|300455794|gb|EFK19287.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia coli MS 21-1] Length = 209 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 23/185 (12%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S+ +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 25 AWSLARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DA 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 84 MMPPLNG----------AVMHPVAHTGVSKMADKNALSLWMRERSDLW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +PR +S + ++GE Sbjct: 123 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTHKVRLISAVPRTVSGPLANST-LQGE 181 Query: 191 VYISK 195 +++ + Sbjct: 182 IFLKR 186 >gi|148381134|ref|YP_001255675.1| BRCT domain protein [Clostridium botulinum A str. ATCC 3502] gi|153933573|ref|YP_001385509.1| BRCT domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153936307|ref|YP_001388915.1| BRCT domain-containing protein [Clostridium botulinum A str. Hall] gi|148290618|emb|CAL84747.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929617|gb|ABS35117.1| BRCT domain protein [Clostridium botulinum A str. ATCC 19397] gi|152932221|gb|ABS37720.1| BRCT domain protein [Clostridium botulinum A str. Hall] Length = 242 Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 27/262 (10%) Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + R+K V NI+ L + ++ FK+ + DIF L++ + + I Sbjct: 7 INRIKSMVGEKGINIKELNDETINILFKNG----LLNNAYDIFLLKKEE------LYKID 56 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 GF V L SINK +N S E+FI++ I V + A +A +L++ + +INN Sbjct: 57 GFTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDLVIDINN-- 114 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N+ D L I D +++ IVE + RN + L V+P I EKN + I+ Sbjct: 115 --NDCDRLKRI------DGMSEEIVESIK--RNKVLLVNLFMYVNP-ISIDEKN--TNIK 161 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K + +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 162 RYKFSITGVLNKDTSY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQYNTTLRIHD 729 +++E Q + +L++ +I + Sbjct: 221 LISERQLVDILKEIKENNKIKN 242 >gi|168179165|ref|ZP_02613829.1| BRCT domain protein [Clostridium botulinum NCTC 2916] gi|226950614|ref|YP_002805705.1| BRCT domain-containing protein [Clostridium botulinum A2 str. Kyoto] gi|182670000|gb|EDT81976.1| BRCT domain protein [Clostridium botulinum NCTC 2916] gi|226842284|gb|ACO84950.1| BRCT domain protein [Clostridium botulinum A2 str. Kyoto] Length = 242 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 121/253 (47%), Gaps = 27/253 (10%) Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + R+K V NI+ L + ++ FK+ + DIF L++ + + I Sbjct: 7 INRIKIMVGEKGINIKELNDETINILFKNG----LLNNAYDIFLLKKEE------LYKID 56 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 GF V L SINK +N S E+FI++ I V + A +A +L++ + +INN Sbjct: 57 GFTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDLVIDINN-- 114 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N+ D L I D +++ IVE + RN + L V+P I EKN + I+ Sbjct: 115 --NDCDRLKRI------DGMSEEIVESIK--RNKVLLVNLFMYVNP-ISIDEKN--TNIK 161 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K + +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 162 RYKFAITGVLNKDTSY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQ 720 +++E Q + +L++ Sbjct: 221 LISERQLVDILKE 233 >gi|289679601|ref|ZP_06500491.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae FF5] Length = 261 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 24/177 (13%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + A + DWL + + + + Sbjct: 91 STTLEGLIDKLHIPSVGPGAAQKLADRF----------GTLEAIISADWLDMRQA--LSE 138 Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ + N A+EA LK+ G H ++ +E L V TG+L Sbjct: 139 KQAKSVRDFFDDSANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 194 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L Sbjct: 195 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALL 251 Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 10/83 (12%) Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFI++LGI VG E A+ LA+ S + Q + ++ + +P VG + Sbjct: 1 TLARFIYALGIPDVGEETAKVLARSLASLERVKQALPEVLTY----------LPDVGLEV 50 Query: 609 AQAIVEFYQNPRNICAVEALLKE 631 A I F+++ N ++ALL E Sbjct: 51 AYEIHSFFEDEHNRSVIDALLGE 73 >gi|207723347|ref|YP_002253746.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial sequencecentral part) protein [Ralstonia solanacearum MolK2] gi|206588546|emb|CAQ35509.1| probable dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial sequencecentral part) protein [Ralstonia solanacearum MolK2] Length = 228 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 32/73 (43%), Positives = 47/73 (64%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +V TGTL + R A+ + GA VS +S+KTD ++ G+ GSKL KA++LGV Sbjct: 149 LSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSKKTDYVVAGEEAGSKLAKAEELGV 208 Query: 707 KIMNEEQFLFLLQ 719 K+++E L LLQ Sbjct: 209 KVLDEAGMLALLQ 221 >gi|213859393|ref|ZP_03385097.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 109 Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 51/78 (65%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 + + S K +V TG+L ++ R A+ + LGA V+ +S+KTD++I G+ GSKL K Sbjct: 30 QEIDSPFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAK 89 Query: 701 AQQLGVKIMNEEQFLFLL 718 AQ+LG+ +++E + + LL Sbjct: 90 AQELGITVIDEAEMIRLL 107 >gi|330955486|gb|EGH55746.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae Cit 7] Length = 296 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 24/177 (13%) Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 + +LE I L I VG A+ LA + + A + DWL + + + + Sbjct: 127 STTLEGMIDKLHIPSVGPGAAQKLADRF----------GTLEAIISADWLDMRQA--LPE 174 Query: 607 IIAQAIVEFYQNPRNIC---AVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTL 658 A+++ +F+ + N A+EA LK+ G H ++ +E L V TG+L Sbjct: 175 KQAKSVRDFFDDSANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSL 230 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L Sbjct: 231 ERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALL 287 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 16/125 (12%) Query: 507 PADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEI 566 PAD++ L+ Q I ++ GF ++S L +I R +L RFI++LGI VG E Sbjct: 1 PADLYKLKYEQ------IIDLEGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVGEET 54 Query: 567 ARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVE 626 A+ LA+ S + Q + ++ + +P VG +A I F+++ N ++ Sbjct: 55 AKVLARSLASLERVQQALPEVLTY----------LPDVGLEVAYEIHSFFEDEHNRSVID 104 Query: 627 ALLKE 631 ALL E Sbjct: 105 ALLGE 109 >gi|237796641|ref|YP_002864193.1| BRCT domain protein [Clostridium botulinum Ba4 str. 657] gi|229263554|gb|ACQ54587.1| BRCT domain protein [Clostridium botulinum Ba4 str. 657] Length = 242 Score = 65.1 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 121/253 (47%), Gaps = 27/253 (10%) Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + R+K+ V NI+ L + ++ FK+ + DIF L++ + + I Sbjct: 7 INRIKNMVGEKGINIKELNDETINILFKNG----LLNNAYDIFLLKKEE------LYKID 56 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G V L SINK +N S E+FI++ I V + A +A +L++ + +INN Sbjct: 57 GLTKEYVDKLIKSINKTKNCSFEKFIYACSIPKVKEKEAIVIAHTFLNFTDLVIDINN-- 114 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N+ D L I D +++ IVE + RN + L V+P I EKN + I+ Sbjct: 115 --NDCDRLKRI------DGMSEEIVESIK--RNKVLLVNLFMYVNP-ISIDEKN--ANIK 161 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K + +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 162 RYKFCITGVLNKDTSY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQ 720 +++E Q + +L++ Sbjct: 221 LISERQLVDILKE 233 >gi|255019090|ref|ZP_05291216.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL F2-515] Length = 99 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 4/87 (4%) Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 P P ++GGE+ KV H P LSL +N EDL F RI + K + I + Sbjct: 17 PESPSKRVGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRI----RDKVGDDIAYMC 72 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDG 157 E KIDG ++++YE GK+ A RGDG Sbjct: 73 ELKIDGLAVSLQYENGKYKQGATRGDG 99 >gi|322652149|gb|EFY48511.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 100 Score = 64.7 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 51/78 (65%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 + + S K +V TG+L ++ R A+ + +GA V+ +S+KTD++I G+ GSKL K Sbjct: 21 QEIDSPFAGKTVVLTGSLSQMSRDDAKARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAK 80 Query: 701 AQQLGVKIMNEEQFLFLL 718 AQ+LG+ +++E + + LL Sbjct: 81 AQELGITVIDEAEMIRLL 98 >gi|170760368|ref|YP_001788506.1| BRCT domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169407357|gb|ACA55768.1| BRCT domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 242 Score = 64.7 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 121/253 (47%), Gaps = 27/253 (10%) Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + R+K+ V NI+ L + ++ FK+ + DIF L++ + + I Sbjct: 7 INRIKNMVGEKGINIKELNDKTINILFKNG----LLNNAYDIFLLKKEE------LYKID 56 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G V L SINK +N S E+FI++ I V + A +A +L++ + +INN Sbjct: 57 GLTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNFTDLVIDINN-- 114 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N+ D L I D +++ IVE + RN + L V+P I EKN + I+ Sbjct: 115 --NDCDRLKRI------DGMSEEIVESIK--RNKVLLVNLFMYVNP-ISIDEKN--ANIK 161 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K + +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 162 RYKFCITGVLNKDTSY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQ 720 +++E Q + +L++ Sbjct: 221 LISERQLVDILKE 233 >gi|153938097|ref|YP_001392537.1| BRCT domain-containing protein [Clostridium botulinum F str. Langeland] gi|152933993|gb|ABS39491.1| BRCT domain protein [Clostridium botulinum F str. Langeland] gi|295320523|gb|ADG00901.1| BRCT domain protein [Clostridium botulinum F str. 230613] Length = 242 Score = 64.7 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 120/253 (47%), Gaps = 27/253 (10%) Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + R+K V NI+ L + ++ FK+ + DIF L++ + + I Sbjct: 7 INRIKSMVGEKGINIKELNDETINILFKNG----LLNNAYDIFLLKKEE------LYKID 56 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 GF V L SINK +N S E+FI++ I V + A +A +L+ + +INN Sbjct: 57 GFTKEYVDELIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFLNLTDLVIDINN-- 114 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N+ D L I D +++ IVE + RN + L V+P I EKN + I+ Sbjct: 115 --NDCDRLKRI------DGMSEEIVESIK--RNKVLLVNLFMYVNP-ISIDEKN--ANIK 161 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K + +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 162 RYKFSITGVLNKDTSY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQ 720 +++E Q + +L++ Sbjct: 221 LISERQLVDILKE 233 >gi|187776894|ref|ZP_02993367.1| hypothetical protein CLOSPO_00433 [Clostridium sporogenes ATCC 15579] gi|187775553|gb|EDU39355.1| hypothetical protein CLOSPO_00433 [Clostridium sporogenes ATCC 15579] Length = 242 Score = 64.7 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 124/253 (49%), Gaps = 27/253 (10%) Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + ++K+ V NI+ L + ++ FK+ F + DIF L++ + + I Sbjct: 7 INKIKNMVGEKGLNIKKLNDETINILFKN---GFLNNV-YDIFLLKKEE------LYKIN 56 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 GF V L SI+K +N S E+FI++ I V + A ++A +L++ + +INN Sbjct: 57 GFTKEHVDELIKSIDKAKNCSFEKFIYASSIPKVKEKEAMAIAHTFLNFTDLVIDINN-- 114 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N+ D L I D I++ +VE + RN + L V+P+ EKN + I+ Sbjct: 115 --NDCDRLRRI------DGISEELVESIK--RNRVFLVNLFMYVNPT-SIDEKN--ANIK 161 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K + +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 162 RYKFCITGVLNKDTNY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQ 720 +++E Q + +L++ Sbjct: 221 LISERQLVDILKE 233 >gi|149925065|ref|ZP_01913379.1| NAD-dependent DNA ligase LigA [Plesiocystis pacifica SIR-1] gi|149814058|gb|EDM73688.1| NAD-dependent DNA ligase LigA [Plesiocystis pacifica SIR-1] Length = 669 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 48/73 (65%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 ++ K +V TG L KI+R +A+ + LGA VS +S+ TD++ VG+ PGSKL KA +LG Sbjct: 246 DVNGKTVVVTGKLAKIKRAEAEARLNALGAKVSGSVSKSTDLLFVGEKPGSKLAKANKLG 305 Query: 706 VKIMNEEQFLFLL 718 + + +E + L+ Sbjct: 306 IPVHDEAALMQLV 318 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 49/79 (62%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 E + ++ KK+ TG L + R +A+ ++ GA ++ +S TD++I+G + GSK Sbjct: 334 ETKAVAALKGKKIAVTGKLSLMTRAEAKAHILAAGAKPTSSVSGATDLLILGKDAGSKQR 393 Query: 700 KAQQLGVKIMNEEQFLFLL 718 A QLGV+ +NE+QFL ++ Sbjct: 394 LAIQLGVETVNEDQFLRMI 412 >gi|170755519|ref|YP_001782825.1| BRCT domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169120731|gb|ACA44567.1| BRCT domain protein [Clostridium botulinum B1 str. Okra] Length = 242 Score = 64.3 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 123/253 (48%), Gaps = 27/253 (10%) Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + R+K+ V NI+ L + ++ F++ F + DIF L++ + + I Sbjct: 7 INRIKNMVGEKGINIKELNDETINILFEN---GF-LNNAYDIFLLKKEE------LYKID 56 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 GF V L SINK +N + E+FI++ I V + A +A +L++ + +INN Sbjct: 57 GFTKEYVDELIKSINKTKNCNFEKFIYACSIPKVTEKEAIVIAHTFLNFTDLVIDINN-- 114 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N+ D L I D +++ IVE + RN + L V+P I EKN + I+ Sbjct: 115 --NDCDRLKRI------DGMSEEIVESIK--RNKVLLVNLFMYVNP-ISIDEKN--ANIK 161 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K + +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 162 RYKFSITGVLNKDTSY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQ 720 +++E Q + +L++ Sbjct: 221 LISERQLVDILKE 233 >gi|126660216|ref|ZP_01731333.1| DNA ligase [Cyanothece sp. CCY0110] gi|126618518|gb|EAZ89270.1| DNA ligase [Cyanothece sp. CCY0110] Length = 524 Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 45/69 (65%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 KKLV G+L + R A+ V Q G +++ S KTD ++VG NPG KL+KAQ+LG+ + Sbjct: 445 KKLVVVGSLDSMNRETAKSLVQQAGGTLTSSPSSKTDYVVVGKNPGDKLKKAQKLGISQL 504 Query: 710 NEEQFLFLL 718 +E QFL L Sbjct: 505 SENQFLEAL 513 >gi|19173693|ref|NP_597496.1| DNA REPLICATION FACTOR C SUBUNIT [Encephalitozoon cuniculi GB-M1] gi|19170899|emb|CAD26673.1| DNA REPLICATION FACTOR C SUBUNIT [Encephalitozoon cuniculi GB-M1] Length = 568 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 2/80 (2%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 ++ K VFTG + KI R A+ V LG +A+ S KT ++ GDNPG SK++KA++LG Sbjct: 8 LKGKVFVFTGDM-KISRDDAKTKVMVLGGRCTAVPSSKTTFLVAGDNPGPSKMQKAKELG 66 Query: 706 VKIMNEEQFLFLLQQYNTTL 725 +K+++EE+F L++ + L Sbjct: 67 IKVLDEEEFDSLIKDTSKAL 86 >gi|325119805|emb|CBZ55358.1| putative NAD-dependent DNA ligase OB-fold domain containing protein [Neospora caninum Liverpool] Length = 1981 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 11/117 (9%) Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V+KV Q LG RA PRW + KF + A +R+ D +G+ G + VA LE Sbjct: 1068 DGVVFKVLSLPAQLLLGNRATGPRWAFARKFPQPFALSRIRDFAFSVGQFGYVHVVAALE 1127 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 PV +G I+ A++ + + R + VGD V V +G P +V I Sbjct: 1128 PVRLGNLTISRASVGTIETL-----------ARRGLAVGDEVYVHLSGHTTPLIVGI 1173 >gi|291298903|ref|YP_003510181.1| BRCT domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290568123|gb|ADD41088.1| BRCT domain protein [Stackebrandtia nassauensis DSM 44728] Length = 1024 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 45/79 (56%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG 705 EIE K +V TG+ + R +A + +++LGA+V +S KTD++ GD G K +KA LG Sbjct: 20 EIEGKTIVLTGSFLAMPRSEAGQRLSELGAIVKGTVSSKTDLVFAGDKAGGKADKALALG 79 Query: 706 VKIMNEEQFLFLLQQYNTT 724 V + E + +L T Sbjct: 80 VPVHGEAALMAVLSGEAAT 98 >gi|168183502|ref|ZP_02618166.1| BRCT domain protein [Clostridium botulinum Bf] gi|182673380|gb|EDT85341.1| BRCT domain protein [Clostridium botulinum Bf] Length = 242 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 120/253 (47%), Gaps = 27/253 (10%) Query: 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL 528 + R+K+ V NI+ L + ++ FK+ + DIF L++ + + I Sbjct: 7 INRIKNMVGEKGINIKELNDETINILFKNG----LLNNAYDIFLLKKEE------LYKID 56 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII 588 G V L SINK +N S E+FI++ I V + A +A + ++ + +INN Sbjct: 57 GLTKEYVDKLIKSINKTKNCSFEKFIYACSIPKVTEKEAIVIAHTFFNFTDLVIDINN-- 114 Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIE 648 N+ D L I D +++ IVE + RN + L V+P I EKN + I+ Sbjct: 115 --NDCDRLKRI------DGMSEEIVESIK--RNKVLLVNLFMYVNP-ISIDEKN--ANIK 161 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVK 707 K TG L K + +E + + +V +++ D ++ GD + K+ A++ + Sbjct: 162 RYKFCITGVLNKDTSY-YEEMIKEANCIVVDNVTKDVDYLVFGDLANAIKMMDAKKYNTR 220 Query: 708 IMNEEQFLFLLQQ 720 +++E Q + +L++ Sbjct: 221 LISERQLVDILKE 233 >gi|330903436|gb|EGH34008.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 130 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 12/115 (10%) Query: 609 AQAIVEFYQNPRNI---CAVEALLKEVSPSIGRHEKNVSSEIENKKL-----VFTGTLQK 660 QA+ +F+ + N A+EA LK+ G H ++ +E L V TG+L++ Sbjct: 9 GQAVCDFFDDSANAERARAIEAQLKD----FGMHWRSEKKTVEGLPLAGQTWVLTGSLER 64 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L Sbjct: 65 MSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALL 119 >gi|332084490|gb|EGI89685.1| NAD-dependent DNA ligase adenylation domain protein [Shigella dysenteriae 155-74] gi|332084829|gb|EGI90012.1| NAD-dependent DNA ligase adenylation domain protein [Shigella boydii 5216-82] Length = 195 Score = 63.2 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 23/185 (12%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F + R + Sbjct: 24 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGNETR-DV 82 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 83 MMPPLNG----------AVMHPVAHTGVRKMADKNALSLWMREHSDLW-----------V 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++GE Sbjct: 122 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQGE 180 Query: 191 VYISK 195 +++ + Sbjct: 181 IFLKR 185 >gi|126174866|ref|YP_001051015.1| DNA ligase (NAD(+)) [Shewanella baltica OS155] gi|125998071|gb|ABN62146.1| DNA ligase (NAD(+)) [Shewanella baltica OS155] Length = 145 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 8/137 (5%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E ++ E A + + +L Q ++ H+ YY P I DSEYD L +R + +P L ++ Sbjct: 12 EDVTPENASQVMQALSQPLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P ++GG ++TH P LSL+ ++ D F R+ + F Sbjct: 72 SPT---QRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRV-----TDKVGEVSFC 123 Query: 130 LEPKIDGTMITIRYEKG 146 EPK+DG ++I Y G Sbjct: 124 CEPKLDGLAVSILYRNG 140 >gi|213620585|ref|ZP_03373368.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 82 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 48/73 (65%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 + + S K +V TG+L ++ R A+ + LGA V+ +S+KTD++I G+ GSKL K Sbjct: 9 QEIDSPFAGKTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAK 68 Query: 701 AQQLGVKIMNEEQ 713 AQ+LG+ +++E + Sbjct: 69 AQELGITVIDEAE 81 >gi|16329814|ref|NP_440542.1| DNA ligase [Synechocystis sp. PCC 6803] gi|1652299|dbj|BAA17222.1| DNA ligase [Synechocystis sp. PCC 6803] Length = 562 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 46/69 (66%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 KK+V GTL + R +A+ + +GA + S KTD I+VG PG+KL+KAQ+LG+ + Sbjct: 492 KKVVILGTLNAMNREEAKTRLQNVGAECTGTPSGKTDYIVVGKAPGAKLKKAQKLGIAQL 551 Query: 710 NEEQFLFLL 718 +E QFL LL Sbjct: 552 SEAQFLELL 560 >gi|166366736|ref|YP_001659009.1| hypothetical protein MAE_39950 [Microcystis aeruginosa NIES-843] gi|166089109|dbj|BAG03817.1| unknown protein [Microcystis aeruginosa NIES-843] Length = 654 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 3/92 (3%) Query: 631 EVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 EV P+ + +++ + + K +V GT KI R KA+ + +G V++ S TD Sbjct: 562 EVQPAAEIVQTSQESAENTLRGKSVVILGTFSKISREKAKSLIINVGGTVTSSPSANTDY 621 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 I++G PG KL+KAQ+LG+K ++E QFL +++ Sbjct: 622 ILLGKAPGEKLKKAQKLGIKTLSEAQFLQMVE 653 >gi|213024616|ref|ZP_03339063.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 130 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 5/109 (4%) Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE----VSPSIGRHEKNVSSEIENKKLV 653 L +VP VG ++A + F+ N + LL E +P + + + + S K +V Sbjct: 23 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVV-INAQEIDSPFAGKTVV 81 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 TG+L ++ R A+ + LGA V+ +S+KTD++I G+ GSKL KAQ Sbjct: 82 LTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQ 130 >gi|323193166|gb|EFZ78384.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] Length = 180 Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 21/160 (13%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +A +E++ L+Q+++ +D Y++ + DS YD L R S + PL Sbjct: 29 RAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTPVSPPL 88 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 N H + + K+ + + + +++ W ++PK+D Sbjct: 89 NG----------TTRHPVAHTGVRKLADRQAVEQWMRGRSELW-----------VQPKVD 127 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPR 175 G +T+ Y+ GK A RG+G GED + IR IP+IP+ Sbjct: 128 GVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQ 167 >gi|291562521|emb|CBL41337.1| NAD-dependent DNA ligase (contains BRCT domain type II) [butyrate-producing bacterium SS3/4] Length = 169 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 30/171 (17%) Query: 34 CYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG------PLNKIGGEMNLSLF 87 YYQ S+ I+ + EYD L + +L + E G P K+G E+ L Sbjct: 21 AYYQESREIMSNFEYDRL----------YDELLKLEQETGTVFAGSPTQKVGYEVLSELP 70 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 K H P LSL K ++++LR+++ L K+DG + + YE G Sbjct: 71 KERHERPMLSLNKTKSVDELREWL------------GGQTGLLSWKMDGLTVVLTYEDGV 118 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDF 198 A RG+G GE +++ R IP + I+ RGE IS +DF Sbjct: 119 LAKAVTRGNGEIGEVITSNARTFINIPTTIPYKGQLIL--RGEAVISYSDF 167 >gi|146229|gb|AAB88710.1| ORF; putative [Escherichia coli] Length = 218 Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 31/221 (14%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 A S +A++E+S L+Q+I DD Y++ K + D YD L R F R + Sbjct: 25 AWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPR-DV 83 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 PLN V H + + K+ + L ++ W + Sbjct: 84 MMPPLNG----------AVMHPVAHTGVRKMVDKNALSLWMRERSDLW-----------V 122 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++GE Sbjct: 123 QPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQGE 181 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD 231 +++ + + +M + N R +G++ R + +D Sbjct: 182 IFLQREGH--IQQQMGGI------NARAKVAGLMMRQDDSD 214 >gi|67922509|ref|ZP_00516018.1| BRCT [Crocosphaera watsonii WH 8501] gi|67855680|gb|EAM50930.1| BRCT [Crocosphaera watsonii WH 8501] Length = 490 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 58/92 (63%), Gaps = 2/92 (2%) Query: 629 LKEVSPSIGRHEKNVSSEI--ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 +K S + ++ V SE+ ++KKLV G+L + R KA+ V Q+G +++ S KT+ Sbjct: 390 VKSESAEVEESKEQVKSELVLKSKKLVIVGSLDSMNREKAKSLVQQVGGNLTSSPSSKTN 449 Query: 687 IIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++VG NPG KL+KA++ G+ ++E QFL L Sbjct: 450 YVVVGKNPGDKLKKAKKFGIAQLSETQFLEAL 481 >gi|159029660|emb|CAO87738.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 636 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 631 EVSPS---IGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 EV P+ + +++ + + K +V GT KI R +A+ + +G V+ S TD Sbjct: 544 EVQPAAKIVQTSQESAENTLRGKTVVILGTFSKISREQAKSLIINVGGTVTGSPSANTDY 603 Query: 688 IIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 I++G PG KL+KAQ+LG+K ++E QFL +++ Sbjct: 604 ILLGKAPGEKLKKAQKLGIKTLSEAQFLQMVE 635 >gi|153829889|ref|ZP_01982556.1| DNA ligase [Vibrio cholerae 623-39] gi|148874632|gb|EDL72767.1| DNA ligase [Vibrio cholerae 623-39] Length = 103 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 620 RNICAVEALLKE--VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 RN + LL++ P++ V S + K +V TG+ ++ R+ A+ + LGA V Sbjct: 2 RNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQALGAKV 61 Query: 678 SAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +S+ TDI+ G+ GSKL KA +LG+++ +E+ + L+ Sbjct: 62 TGSVSKNTDIVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 103 >gi|242011918|ref|XP_002426690.1| Replication factor C subunit, putative [Pediculus humanus corporis] gi|212510861|gb|EEB13952.1| Replication factor C subunit, putative [Pediculus humanus corporis] Length = 842 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 1/81 (1%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLE 699 K S+ ++N V TG L +++ KA E + + G V+ +S+KTD I+VG+ PG SKL Sbjct: 118 KGTSNCLQNLTFVITGILDSLEKKKAVELIQKYGGRVTTQVSKKTDFIVVGEEPGESKLS 177 Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720 KA++ K +NE++ L L+ + Sbjct: 178 KAEKFCTKKINEDELLALITE 198 >gi|172038660|ref|YP_001805161.1| hypothetical protein cce_3747 [Cyanothece sp. ATCC 51142] gi|171700114|gb|ACB53095.1| unknown [Cyanothece sp. ATCC 51142] Length = 534 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +E KKLV G+L + R A+ V Q G +++ S +T ++VG NPG KL+KAQ+LG+ Sbjct: 452 LEGKKLVVVGSLNSMNREIAKSLVQQAGGTLTSSPSSRTHYVVVGKNPGDKLKKAQKLGI 511 Query: 707 KIMNEEQFLFLL 718 ++E+QFL L Sbjct: 512 AQLSEDQFLEAL 523 >gi|37926542|pdb|1L7B|A Chain A, Solution Nmr Structure Of Brct Domain Of T. Thermophilus: Northeast Structural Genomics Consortium Target Wr64tt Length = 92 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 V TG L + R + + + +LGA V+ +SRKT ++VG+NPGSKLEKA+ LGV + E Sbjct: 13 FVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTE 71 Query: 712 EQFLFLLQ 719 E+ LL+ Sbjct: 72 EELYRLLE 79 >gi|18376023|emb|CAB91757.2| related to replication factor C protein [Neurospora crassa] Length = 1092 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + K VFTG L+ I R +AQ V + G V+ S KTD +++GD+ G SKL K ++ G Sbjct: 344 LAGKTFVFTGLLKTIAREEAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 403 Query: 706 VKIMNEEQFLFLLQ 719 +K ++EE +L++ Sbjct: 404 IKTIDEEGLFYLIR 417 >gi|164424568|ref|XP_963539.2| hypothetical protein NCU06767 [Neurospora crassa OR74A] gi|157070569|gb|EAA34303.2| hypothetical protein NCU06767 [Neurospora crassa OR74A] Length = 1086 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + K VFTG L+ I R +AQ V + G V+ S KTD +++GD+ G SKL K ++ G Sbjct: 338 LAGKTFVFTGLLKTIAREEAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 397 Query: 706 VKIMNEEQFLFLLQ 719 +K ++EE +L++ Sbjct: 398 IKTIDEEGLFYLIR 411 >gi|303389467|ref|XP_003072966.1| DNA replication factor C subunit [Encephalitozoon intestinalis ATCC 50506] gi|303302109|gb|ADM11606.1| DNA replication factor C subunit [Encephalitozoon intestinalis ATCC 50506] Length = 566 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLG 705 ++ K VFTG + K+ R A+ V LG + S KT ++VGDNPG K++KA +L Sbjct: 8 LKGKVFVFTGDM-KMSRDDAKARVMVLGGRCTTAPSSKTSFLVVGDNPGPMKIQKANELN 66 Query: 706 VKIMNEEQFLFLLQ 719 +KI+NEE+F+ L++ Sbjct: 67 IKILNEEEFVKLVE 80 >gi|167390687|ref|XP_001739454.1| replication factor C large subunit [Entamoeba dispar SAW760] gi|165896833|gb|EDR24155.1| replication factor C large subunit, putative [Entamoeba dispar SAW760] Length = 576 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703 +E E K V TG ++ R + +EY+T G V+ +S KT ++I G+ PG SK+EKA++ Sbjct: 160 NEFEKKNFVLTGVYDELDRDEMKEYITNFGGNVATSISGKTGVLIAGEEPGPSKIEKAKE 219 Query: 704 LGVKIMNEE 712 G+ I NE+ Sbjct: 220 KGIAIWNED 228 >gi|1488250|gb|AAB12366.1| DNA ligase [Dichelobacter nodosus] Length = 139 Score = 58.2 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 1/103 (0%) Query: 608 IAQAIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +A I F+ + N + A++ V S +K + + + K +V TGTL + R +A Sbjct: 1 VAADIEHFFADEDNRAVIAAIVPAGVHWSTELPKKIIDAPLLGKTVVITGTLPSLSRAEA 60 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 Q+ + LGA V++ +SR+TD +++G + GSKL +AQ V+++ Sbjct: 61 QKRLETLGAKVTSQVSRQTDFLLLGADAGSKLARAQAFSVRLL 103 >gi|289614472|emb|CBI58756.1| unnamed protein product [Sordaria macrospora] Length = 1075 Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + K VFTG L+ I R AQ V + G V+ S KTD +++GD+ G SKL K ++ G Sbjct: 335 LAGKTFVFTGLLKTIAREDAQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHG 394 Query: 706 VKIMNEEQFLFLLQ 719 +K ++EE +L++ Sbjct: 395 IKTIDEEGLFYLIR 408 >gi|330872403|gb|EGH06552.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea str. race 4] Length = 379 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 73/357 (20%), Positives = 138/357 (38%), Gaps = 59/357 (16%) Query: 215 NPRNAASGILRR--LNPTD---ITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVN 269 N R+ +G+L R ++P I ++ + +G G ++ A Q + P+ Sbjct: 18 NARSKVAGLLARQTISPQQADAIGLFVWDWPNGPGDMAQRLAGLQAMGFEDSAAYSHPLE 77 Query: 270 NGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 N + A +Y R+ LP+ DG++ + + ++ +A +P W+ + K Sbjct: 78 NYAKAARWRE---HWY------RNPLPFATDGVIMRQGQRPPMQRW--QASAPYWIAAWK 126 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 QA + + +GR+G +TPV L PV + ++ + + + L Sbjct: 127 HPYAQALAEVRKVSFNVGRSGRITPVLELTPVRLDDRTVSRISTGSLQRWQTL------- 179 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKT 449 DIR GD+V V AG IP++ +I + V + P+ Sbjct: 180 ----DIRPGDQVAVSLAGLTIPRLDGVISRA------------------AERVEMIIPQA 217 Query: 450 GKL--VAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIP 507 ++ + T G C +Q RL + + G+G D ++ I Sbjct: 218 DDFHELSCWQATPG--CESQFRARLIWLSGKKGLALPGVGPGTWDKLIENGQ----IESL 271 Query: 508 ADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 D TL ++ NI GF + S L S+ R + ++ ++G+ G+ Sbjct: 272 LDWMTLNH------AELANIPGFAERSSAKLLASLQTARERPFQTWLKAIGLPPTGS 322 >gi|328790808|ref|XP_397246.4| PREDICTED: replication factor C subunit 1 [Apis mellifera] Length = 1009 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L ++R +A+E V Q G + +++KTD IIVGD G SKL KA L +K ++ Sbjct: 289 FVITGVLDSLEREEAEELVKQYGGRILHQVTKKTDYIIVGDQAGPSKLSKADSLNIKKIS 348 Query: 711 EEQFLFLLQQYNTTLRI 727 E+ L L+Q+ + + +I Sbjct: 349 EDDLLDLIQEESPSKKI 365 >gi|32477333|ref|NP_870327.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica SH 1] gi|32447884|emb|CAD77402.1| probable DNA polymerase III polC-type [Rhodopirellula baltica SH 1] Length = 355 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 15/87 (17%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +E +K+VFTG LQK+QR +A+ ++ G + +SRKTD+++VGD ++ ++ + V Sbjct: 266 LEGRKVVFTGVLQKLQREEAEMLTSRCGGKCQSSVSRKTDLVVVGDPDSRTVQASRTMSV 325 Query: 707 K---------------IMNEEQFLFLL 718 K IM E +FL ++ Sbjct: 326 KEATARQLAAEGAPLRIMTEHEFLEMI 352 >gi|50292909|ref|XP_448887.1| hypothetical protein [Candida glabrata CBS 138] gi|49528200|emb|CAG61857.1| unnamed protein product [Candida glabrata] Length = 854 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTGTL I+R A+ + GA V+ +S+KT ++++GD G KLEK + LG+K ++ Sbjct: 157 IVFTGTLPSIERGAAENLAKRYGARVTKSISKKTSVVVLGDEAGPKKLEKIKDLGIKAID 216 Query: 711 EEQFLFLL 718 EE F L+ Sbjct: 217 EEGFKQLI 224 >gi|116205063|ref|XP_001228342.1| hypothetical protein CHGG_10415 [Chaetomium globosum CBS 148.51] gi|88176543|gb|EAQ84011.1| hypothetical protein CHGG_10415 [Chaetomium globosum CBS 148.51] Length = 1060 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707 K VFTG L+ I R + Q V + G V+ S KTD +++GD+ G SKL K ++ G+K Sbjct: 316 GKSFVFTGLLKTISREEGQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHGIK 375 Query: 708 IMNEEQFLFLLQ 719 ++EE +L++ Sbjct: 376 TIDEEGLFYLIK 387 >gi|289804479|ref|ZP_06535108.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 119 Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P ILD+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + K ++ + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD--RLKSTENVIWCCELK 115 Query: 134 IDG 136 +DG Sbjct: 116 LDG 118 >gi|260827655|ref|XP_002608780.1| hypothetical protein BRAFLDRAFT_183645 [Branchiostoma floridae] gi|229294132|gb|EEN64790.1| hypothetical protein BRAFLDRAFT_183645 [Branchiostoma floridae] Length = 756 Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 48/69 (69%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ ++RH+A+E V + G V++ +S++T ++VG + G SKL+K QLG+K ++ Sbjct: 69 FVLTGILESMERHEAKELVERYGGKVTSSVSKRTSYVVVGRDAGESKLDKVSQLGLKTLD 128 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 129 EDGLLELVK 137 >gi|149928190|ref|ZP_01916435.1| DNA ligase [Limnobacter sp. MED105] gi|149823081|gb|EDM82321.1| DNA ligase [Limnobacter sp. MED105] Length = 93 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 K V TGTL + R +A + G V+ +S+KTD ++ G+ GSKLEKA LGV ++ Sbjct: 25 KTFVLTGTLSQYSRDEAGALIVARGGKVTGSVSKKTDYLLAGEAAGSKLEKATALGVAVL 84 Query: 710 NEEQFLFLL 718 +E F +L Sbjct: 85 DESTFQGML 93 >gi|269860225|ref|XP_002649835.1| replication factor C subunit [Enterocytozoon bieneusi H348] gi|220066776|gb|EED44248.1| replication factor C subunit [Enterocytozoon bieneusi H348] Length = 570 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 2/79 (2%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707 N VFTG + K+ R AQ + QLG ++ +S KT +IVG++PG SKL+KA++LG+ Sbjct: 7 NYTFVFTGIM-KMDREHAQFQIRQLGHRSTSAISGKTTHLIVGNDPGVSKLKKAKELGIL 65 Query: 708 IMNEEQFLFLLQQYNTTLR 726 I+NE +F LL + +++ Sbjct: 66 ILNETEFEQLLHKMQESVK 84 >gi|327537942|gb|EGF24639.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica WH47] Length = 355 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 15/87 (17%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +E +K+VFTG LQK+QR +A+ ++ G + +SRKTD+++VGD ++ ++ + V Sbjct: 266 LEGRKVVFTGVLQKLQREEAEMLTSRCGGKCQSNVSRKTDLVVVGDPDSRTVQASRTMSV 325 Query: 707 ---------------KIMNEEQFLFLL 718 KIM E +FL ++ Sbjct: 326 KEATARQLAAEGAPLKIMTEHEFLEMI 352 >gi|156841650|ref|XP_001644197.1| hypothetical protein Kpol_1059p29 [Vanderwaltozyma polyspora DSM 70294] gi|156114834|gb|EDO16339.1| hypothetical protein Kpol_1059p29 [Vanderwaltozyma polyspora DSM 70294] Length = 858 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTG L ++R A+ + GA V++ +SRKT ++++G+ G K+EK +QLGVK +N Sbjct: 153 IVFTGVLPTLERGNAETLAKRYGARVTSSISRKTSVVVLGEEAGPKKVEKIKQLGVKAIN 212 Query: 711 EEQFLFLL 718 E+ F L+ Sbjct: 213 EDGFKQLI 220 >gi|57168175|ref|ZP_00367314.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228] gi|57020549|gb|EAL57218.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228] Length = 141 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 5/117 (4%) Query: 605 GDIIAQAIVEFYQ-NPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 G+ +A ++ EF + N I LL + E +V I K V TG L + R Sbjct: 29 GEQMALSLCEFSRVNSARIDEFYKLLNLKEQKVQIQEDSV---IFGKTFVITGALSR-PR 84 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + + LG VS +S+KTD ++ G GSKL+KAQ+LGVK ++E +F L+++ Sbjct: 85 DEFKNLIESLGGKVSGSVSKKTDYVLFGQEAGSKLDKAQELGVKCIDENEFNELIEK 141 >gi|238764311|ref|ZP_04625262.1| DNA ligase B [Yersinia kristensenii ATCC 33638] gi|238697462|gb|EEP90228.1| DNA ligase B [Yersinia kristensenii ATCC 33638] Length = 243 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 34/230 (14%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAI--AHAFPDLARSED 70 S E+ E++ LE+++ D Y+Q ++ D+ YD L+ + H PD S Sbjct: 30 SEERMSGEINLLEKQLFLWDVAYHQQGISLLPDNVYDQLQDKLHGWRSCHGLPDKKNS-- 87 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 I G K H + L+K+ + L ++ W + Sbjct: 88 -----TLIAGN-----GKSPHPVAHTGLKKLKDETALIDWMAGRKNLW-----------V 126 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 +PKIDG +T+ Y+ G RG+G G+D + I IP+ ++ P ++ ++GE Sbjct: 127 QPKIDGVAVTLVYQAGNLTQILSRGNGLKGQDWTDKAPFISAIPQYIAA-APPLLTLQGE 185 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240 + FL + A + N R + +G L R + T + L F+ Sbjct: 186 L------FLQMEGHQQA--QSGGVNARASVAGALMRKSATPLLAKLGIFI 227 >gi|330883607|gb|EGH17756.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea str. race 4] Length = 94 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 41/63 (65%) Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ Sbjct: 21 VLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDED 80 Query: 713 QFL 715 L Sbjct: 81 ALL 83 >gi|330883891|gb|EGH18040.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea str. race 4] Length = 105 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ YE G+ V A RGDG G+D ++ R I TIP+ L PE ++G Sbjct: 31 IQPKVDGVAVTLVYENGQLVQAISRGDGRKGQDWTSQARLIKTIPQ--HLPQPESAILQG 88 Query: 190 EVYISKNDFL 199 E+Y +D + Sbjct: 89 ELYWRLDDHI 98 >gi|302694127|ref|XP_003036742.1| hypothetical protein SCHCODRAFT_46550 [Schizophyllum commune H4-8] gi|300110439|gb|EFJ01840.1| hypothetical protein SCHCODRAFT_46550 [Schizophyllum commune H4-8] Length = 862 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L R +A E + G V+ S KTD +++GDN G SKL ++ G+K +N Sbjct: 203 FVFTGELSAFSRDEAVELAKRFGGRVTGQPSGKTDYVVLGDNAGDSKLRAIKKHGLKTLN 262 Query: 711 EEQFLFLLQQYNTTLRIHDDD 731 E++FL L+ N ++ D+ Sbjct: 263 EDEFLALVGSRNKDGKMKVDE 283 >gi|156359338|ref|XP_001624727.1| predicted protein [Nematostella vectensis] gi|156211524|gb|EDO32627.1| predicted protein [Nematostella vectensis] Length = 793 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGV 706 E V TG L I+R AQ+ + + G V+ +S+KT ++VG + G SKL KAQ LG Sbjct: 56 EGLTFVVTGVLDSIERDHAQDLIQRYGGKVTGSVSKKTSYLLVGRDAGASKLSKAQTLGT 115 Query: 707 KIMNEEQFLFLLQ 719 K ++E+ FL L++ Sbjct: 116 KQLDEDAFLDLIR 128 >gi|196234149|ref|ZP_03132982.1| DNA ligase (NAD(+)) [Chthoniobacter flavus Ellin428] gi|196221800|gb|EDY16337.1| DNA ligase (NAD(+)) [Chthoniobacter flavus Ellin428] Length = 122 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + L Q++ H+ YY + P I D++YDAL R + A P+ P+ P + Sbjct: 5 QTRIEELRQQLEEHNRRYYDEATPTISDADYDALFRELRDLEDAHPEFI---TPDSPTRR 61 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRK 109 +G + +V H++P LSL+ ++ E LR+ Sbjct: 62 VGEKATAGFRQVRHAVPMLSLDNLFAKEGLRR 93 >gi|300856782|ref|YP_003781766.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii DSM 13528] gi|300436897|gb|ADK16664.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii DSM 13528] Length = 436 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 14/95 (14%) Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP------- 694 + S+ NK +VFTG L+ + R +A + V LG + + +S+KTD +IVG+ Sbjct: 227 DTSNPFYNKNVVFTGELKSLGRKEAMQKVVNLGGTLKSGVSKKTDYLIVGNQDKSLVGEN 286 Query: 695 --GSKLEKAQQL-----GVKIMNEEQFLFLLQQYN 722 SK EKA +L +KI+NE +FL L++ N Sbjct: 287 GISSKEEKAAELNENGSSIKILNESEFLELIKTPN 321 >gi|207110333|ref|ZP_03244495.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1] Length = 112 Score = 54.3 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 16/110 (14%) Query: 470 ERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILG 529 E L HF S+DA NI+GLG + ++ F+ E F+ D++ L K+E+++ Sbjct: 1 ESLIHFASKDALNIQGLGDKVIEQLFE-EKLIFN---ALDLYAL---------KLEDLMR 47 Query: 530 FGDVSVT---NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLS 576 + NL D+I K +N L R I +LGI H+G +++LA+Y L+ Sbjct: 48 LDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLARYGLN 97 >gi|302564339|ref|NP_001082960.2| replication factor C subunit 1 [Danio rerio] Length = 1147 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ ++R +A+ + + G V+ +SRKT +++G + G SK EKA+ G KI+N Sbjct: 408 FVLTGVLESMERDEAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAESFGTKIIN 467 Query: 711 EEQFLFLLQ 719 E++ L L++ Sbjct: 468 EDELLDLIR 476 >gi|302307023|ref|NP_983504.2| ACR102Wp [Ashbya gossypii ATCC 10895] gi|299788800|gb|AAS51328.2| ACR102Wp [Ashbya gossypii ATCC 10895] Length = 840 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTG L I R A+ + GA V+ +S KT ++++GD G KLEK +QLG+K ++ Sbjct: 152 MVFTGVLPNIDRPAAEALAKKYGARVTKSISSKTSVVVLGDEAGPKKLEKIRQLGIKAID 211 Query: 711 EEQFLFLL 718 E F L+ Sbjct: 212 ENGFRQLI 219 >gi|167520484|ref|XP_001744581.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776912|gb|EDQ90530.1| predicted protein [Monosiga brevicollis MX1] Length = 554 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709 K V TG L+ ++R QE V G V+ +S++ D ++ GD PG SK+ KA+ L +K++ Sbjct: 10 KFVITGVLESLEREDVQELVKDHGGVIQKSVSKRVDYVVAGDEPGPSKMSKARDLKLKVL 69 Query: 710 NEEQFLFLLQ 719 +E+ L++ Sbjct: 70 DEDGLFELIR 79 >gi|141795347|gb|AAI39656.1| Zgc:162875 protein [Danio rerio] Length = 529 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ ++R +A+ + + G V+ +SRKT +++G + G SK EKA+ G KI+N Sbjct: 408 FVLTGVLESMERDEAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAESFGTKIIN 467 Query: 711 EEQFLFLLQ 719 E++ L L++ Sbjct: 468 EDELLDLIR 476 >gi|311977685|ref|YP_003986805.1| DNA ligase [Acanthamoeba polyphaga mimivirus] gi|82000023|sp|Q5UPZ0|DNLJ_MIMIV RecName: Full=DNA ligase; AltName: Full=NAD-dependent DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|55416925|gb|AAV50575.1| NAD-dependent DNA ligase [Acanthamoeba polyphaga mimivirus] gi|308204745|gb|ADO18546.1| DNA ligase [Acanthamoeba polyphaga mimivirus] Length = 636 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 155/724 (21%), Positives = 274/724 (37%), Gaps = 147/724 (20%) Query: 22 SSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGE 81 + +E+ +S + Y+ +I D EYD L R + + A+ P + G+ Sbjct: 23 TDIEEALSVSSEYYHNTGTSLISDQEYDILMDRLKELNPSSKIFAQVGAP------VKGK 76 Query: 82 MNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG--TMI 139 KV S+ KI K + W ++ S + + K+DG ++ Sbjct: 77 ------KVKLPFWMGSMNKI-------KADEKAVNKWL--NEYSGPYVISDKLDGISCLL 121 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFL 199 TI+ K K RGDG G+D++ + I I L I + I +RGE+ +SK +F Sbjct: 122 TIKNNKTKLY---TRGDGTYGQDITHLLGLI-NIDIGLLEEIDQDIAIRGELIMSKKNFE 177 Query: 200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQ 259 + M AN RN GI+ P + + IF YE+++ Sbjct: 178 KYQEIM--------ANARNMVGGIVNS-KPESVNK------DHAADVDLIF----YEVIK 218 Query: 260 KMRCLGFPVNNGVRQANTFH--GI-VSYYNEMKS-----IRSTLP-------YDIDGLVY 304 P + RQ G+ V YYN K+ + S L Y+IDG++ Sbjct: 219 -------PNDKLSRQLKILKEWGLKVVYYNIYKTFDVNILESVLSERKKKSGYEIDGIIV 271 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 + K + + +P + + K T + + + G+L P + + V + Sbjct: 272 TDN----NKHVRNISGNPSYSFAFKGDTPTIDTVVKRVIWTPSKDGVLVPRIKFKKVRLS 327 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVK--RAGEVIPKVVDIIVNERH 422 + T N YI D ++G ++ R+G+VIP + ++ + Sbjct: 328 NVDLEYTTGFNAKYI-------------VDNKIGSGAIINVVRSGDVIPYITHVVKPAKK 374 Query: 423 PDAQPFSFPSFCPICQSR----VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 PD P+ + ++ D+N ++ +RL F+ Sbjct: 375 PD-----LPNIEYVWDKNGVNIILADINDNETVII----------------KRLTKFMRN 413 Query: 479 -DAFNI-EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENIL--GFGDVS 534 A NI EG+ + ++ F + P D T+ Q+ KI N L ++ Sbjct: 414 IGAENISEGITTRLVEAGFDTI-PKIINMTEEDFLTIDGFQERLAEKIYNNLQNSLDNLD 472 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQN-FAQEINNIIAHNND 593 + L D+ N IF R G + + + Y + N + +E +NI Sbjct: 473 ILTLMDASN----------IFG---RGFGTKKFKKILDVYPNIVNQYTKETDNI------ 513 Query: 594 DW-LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 W L+ + I + N + V + P I E N +N+ + Sbjct: 514 -WRKKLLDIEGFDTITVNKFLGEMPNFQKFYKVINKTITIKPYIS--EVNSEGIFQNQTV 570 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV--GDNPGSKLEKAQQLGVKIMN 710 VFTG + Q+++ G VS +S+ T +++ G+ +K +KA+QLG+K M Sbjct: 571 VFTG----FRNADWQKFIENEGGKVSGSVSKNTSLLVYNDGEESSAKYQKAKQLGIKTMT 626 Query: 711 EEQF 714 + F Sbjct: 627 KSSF 630 >gi|58260802|ref|XP_567811.1| purine nucleotide binding protein [Cryptococcus neoformans var. neoformans JEC21] gi|134117247|ref|XP_772850.1| hypothetical protein CNBK2210 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255468|gb|EAL18203.1| hypothetical protein CNBK2210 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229892|gb|AAW46294.1| purine nucleotide binding protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1001 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG ++ + R AQE V + V+ S KT ++VG+N G SKL K ++ + ++N Sbjct: 279 FVFTGEMESLGREDAQELVRRYSGKVTTAPSGKTSYVVVGENAGVSKLNKVKEKKIPMIN 338 Query: 711 EEQFLFLLQQYNT 723 E++FL L++Q ++ Sbjct: 339 EDEFLELIRQRSS 351 >gi|213850350|ref|ZP_03381248.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 110 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 3/101 (2%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P ILD+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114 P ++G + ++ H +P LSL+ +++ E F R+ Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRV 98 >gi|9631366|ref|NP_048233.1| ORF MSV162 putative NAD+ dependent DNA ligase, similar to Thermus thermophilus SW:P26996 [Melanoplus sanguinipes entomopoxvirus] gi|4049719|gb|AAC97679.1| ORF MSV162 putative NAD+ dependent DNA ligase, similar to Thermus thermophilus SW:P26996 [Melanoplus sanguinipes entomopoxvirus] Length = 522 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 99/436 (22%), Positives = 184/436 (42%), Gaps = 98/436 (22%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 L + + I ++ YY+ + +I D YD + + + +PD N KIG Sbjct: 22 LEDISEIIKILNEKYYE-GETLISDEIYDKI---IEYVNKKYPD-------NDITKKIGY 70 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMIT 140 E KV S KI++ ED +KF I ++ +SI ++ K DG I+ Sbjct: 71 E---PKNKVKLPYYMGSENKIYD-EDEKKFNNWIEKYGT----SSIIVSV--KADG--IS 118 Query: 141 IRYEKGKF-VYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE--VRGEVYISKND 197 + ++ GK +Y RGDG+ G+D+S ++ ++ ++PE+ + +RGE+ I+K+ Sbjct: 119 VLWDIGKNKLYT--RGDGNYGKDISWFLK-------YMNYDLPELSDYVIRGELVINKD- 168 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPT---DITRYLNFFVHGL----GKTSEIF 250 RN +G + L DI + + F + + F Sbjct: 169 -----------------KTRNDVAGAINSLEANRNEDILKEIYFVGYEILNPRFNQENQF 211 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 K + ++ ++ + + + + + + Y E+K + YDIDGLV + + + Sbjct: 212 KKLKQHKIRHIKAMKYDIEDV-----SLECLSELYQELKP---KMKYDIDGLVIRNNNVN 263 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 G +P W ++K +T++L++ QI + P+A LEP+ + I Sbjct: 264 DPITDG----NPPWSFAYKPPNTIYTTKVLNVIWQISKQNKYIPIAELEPIKLENKTIKR 319 Query: 371 ATLHNEDYIK----GLDASGKV-MRGGRDIRVGDRVLVKRAGEVIPKVVDII----VNER 421 + +N ++ G DA ++ RGG IPK+V++I V+E Sbjct: 320 VSCYNAKFVTENGIGTDAIVEIEYRGG----------------AIPKLVNVIKPVTVDES 363 Query: 422 H-PDAQPFSFPSFCPI 436 PD + + PI Sbjct: 364 DLPDGKIIDNHLYAPI 379 >gi|171689552|ref|XP_001909716.1| hypothetical protein [Podospora anserina S mat+] gi|170944738|emb|CAP70849.1| unnamed protein product [Podospora anserina S mat+] Length = 912 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKI 708 K VFTG L+ I R Q V + G V+ S KTD +++GD+ G SKL K ++ +K Sbjct: 269 KTFVFTGLLKTISREDGQALVKRYGGKVTGAPSSKTDFVVLGDDAGPSKLRKIKEHNIKT 328 Query: 709 MNEEQFLFLLQ 719 ++EE +L++ Sbjct: 329 IDEEGLFYLIK 339 >gi|300706363|ref|XP_002995454.1| hypothetical protein NCER_101643 [Nosema ceranae BRL01] gi|239604566|gb|EEQ81783.1| hypothetical protein NCER_101643 [Nosema ceranae BRL01] Length = 598 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 2/68 (2%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGV 706 +NK VFTG L + R A+ V LG V+ S+KTD ++VG PG KL+KAQ L + Sbjct: 6 KNKTFVFTGELT-LDREYAKSKVILLGGRVTIAPSKKTDFLVVGAEPGPVKLKKAQDLNI 64 Query: 707 KIMNEEQF 714 KI+ E++F Sbjct: 65 KIIYEQEF 72 >gi|313760612|ref|NP_001186496.1| replication factor C (activator 1) 1, 145kDa [Xenopus (Silurana) tropicalis] Length = 1144 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V TG L+ I+R +A+ V + G V+ +S+KT+ II+G + G SK EKA+ G Sbjct: 396 MEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFG 455 Query: 706 VKIMNEEQFLFLLQ 719 KI++E+ L L++ Sbjct: 456 TKILDEDGLLNLIR 469 >gi|315282736|ref|ZP_07871076.1| DNA ligase, NAD-dependent [Listeria marthii FSL S4-120] gi|313613623|gb|EFR87427.1| DNA ligase, NAD-dependent [Listeria marthii FSL S4-120] Length = 69 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 39/58 (67%) Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 L+K+ R+ A+ + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + Sbjct: 1 LEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLI 58 >gi|109287930|ref|YP_654624.1| hypothetical protein MIV052L [Invertebrate iridescent virus 3] gi|123878657|sp|Q197A8|VF205_IIV3 RecName: Full=Putative DNA ligase 052L gi|106073553|gb|ABF82082.1| hypothetical protein MIV052L [Aedes taeniorhynchus iridescent virus] Length = 756 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 91/426 (21%), Positives = 163/426 (38%), Gaps = 85/426 (19%) Query: 32 DDCYYQ-YSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVT 90 D YY PI+ D EYD L D + PD G K+G + S V Sbjct: 20 DKAYYNGVGDPIMSDEEYDNL---VDYMDELNPD-------GGVKTKVGASPSRSK-SVK 68 Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG----TMITIRYEKG 146 +P SL+KI + ++ + W+ K ++ K+DG + T+ K Sbjct: 69 LPMPMNSLDKIKTQHEFDNWM----KNWKPK----AMLLVKEKLDGVSCLAVFTLEQNKP 120 Query: 147 KFVYAALRGDGHSGEDVS----------------------------ACIRAIPTIPRVLS 178 + RGDG +G +++ C I Sbjct: 121 PKIELFTRGDGTTGTNITRLLNHGLKVGNDYCFDDMVNEDKWTTDWGCYLNAEAIDHWKK 180 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLN 237 L + ++ +RGE+ +++ +F + N RN SG + + +P I + ++ Sbjct: 181 LPVKKVY-IRGELIVTRKNFQTWYSNR-------FMNARNLVSGQVNKKSPDPKILQDID 232 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGF------PVNNGVRQANTFHGIVSYYNEMKSI 291 F + L + + M ++ L F PV + S + ++ Sbjct: 233 FVPYDL-----VIDLKRPTMTHEVEHLLFRMIGATPVYTRFLFLSDTISTESMADYLERR 287 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 + Y+IDGLV +VD+ +L R +P+ ++ K A T + ++ + + Sbjct: 288 KEKSDYEIDGLVIQVDDDTLFAPPDNR--NPKDTVAFKIMGTTARTTVTHVEWNLSKGSK 345 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 P + PV++ G I+ T + YI + K+ +G VL+ R+GEVIP Sbjct: 346 YKPTIHITPVSLSGVTISKVTGFHGKYI----SENKIGKGA-------VVLITRSGEVIP 394 Query: 412 KVVDII 417 +V +I Sbjct: 395 HIVSVI 400 >gi|313608258|gb|EFR84263.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL F2-208] Length = 70 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 39/58 (67%) Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 L+K+ R+ A+ + LG VS +S+KTD+++ G + GSKL KA++L + I +EE + Sbjct: 2 LEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLI 59 >gi|150864993|ref|XP_001384033.2| hypothetical protein PICST_35815 [Scheffersomyces stipitis CBS 6054] gi|149386249|gb|ABN66004.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 764 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTG L ++ R ++ + GA V+ +S KT ++++GD G SK++K + L +K +N Sbjct: 57 IVFTGVLPRLDRDTSENLAKRYGAKVTKSISGKTSLVVIGDEAGPSKIKKIKSLHIKAIN 116 Query: 711 EEQFLFLLQ 719 E+ F+ LLQ Sbjct: 117 EDGFIQLLQ 125 >gi|89268749|emb|CAJ82643.1| replication factor C (activator 1) 1 [Xenopus (Silurana) tropicalis] Length = 510 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ V + G V+ +S+KT+ II+G + G SK EKA+ G KI++ Sbjct: 401 FVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGTKILD 460 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 461 EDGLLNLIR 469 >gi|310794495|gb|EFQ29956.1| replication factor RFC1 C terminal domain-containing protein [Glomerella graminicola M1.001] Length = 1026 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG LQ + R + Q V + G V+ S KT +++GD+ G SKL+K + + +K +N Sbjct: 312 FVFTGVLQTLGREEGQALVKKYGGKVTGAPSSKTSYVVLGDDAGPSKLKKIRDMNIKTIN 371 Query: 711 EEQFLFLLQQ 720 EE L+++ Sbjct: 372 EEGLFELIRR 381 >gi|213421873|ref|ZP_03354939.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 73 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y+ GK A RG+G GED + IR IP+IP+ + + ++G Sbjct: 9 VQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAV-LQG 67 Query: 190 EVYISK 195 E+++ + Sbjct: 68 EIFLQR 73 >gi|327273243|ref|XP_003221390.1| PREDICTED: replication factor C subunit 1-like [Anolis carolinensis] Length = 1124 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V TG L+ I+R +A+ + + G V+ +S+KT+ ++ G + G SK EKA LG Sbjct: 389 LEGMTFVITGVLESIERDEAKSLIERYGGKVTGNISKKTNFLVKGRDCGLSKCEKASALG 448 Query: 706 VKIMNEEQFLFLLQQ 720 KI++E+ L+Q+ Sbjct: 449 TKIIDEDGLFDLIQK 463 >gi|207109383|ref|ZP_03243545.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1] Length = 53 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 37/50 (74%) Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA +S+ +S KTD +I G+NPGSKL A++ GV ++NEE+ L L++ + Sbjct: 4 LGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKELD 53 >gi|312213054|emb|CBX93136.1| similar to chromosome transmission fidelity factor [Leptosphaeria maculans] Length = 1098 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG LQ+ R +AQE V + G V+ S+KT+ +++G + G SKL+K + + +K ++ Sbjct: 367 FVFTGVLQRWGRTEAQELVKRHGGKVTGAPSKKTNYVVLGSDAGPSKLQKIKDMDIKTID 426 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 427 EDGLTLLIEK 436 >gi|90019261|gb|ABD84282.1| NAD-dependent DNA ligase-like [Yersinia sp. MH-1] Length = 167 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 12/106 (11%) Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 +++H + L+K+ L +++ W ++PK+DG +T+ Y +G Sbjct: 46 RLSHPVAHTGLKKLHGKGALSEWLAERKNLW-----------VQPKVDGVAVTLTYVQGN 94 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYI 193 A RGDG G++ + ++ IP IP +S P ++ + GE+++ Sbjct: 95 LTQAISRGDGAVGQNWTDKVKYIPAIPHFIS-QAPPLLVLHGELFL 139 >gi|321264327|ref|XP_003196881.1| DNA replication activator 1 subunit1 (Replication factor C subunit 1) [Cryptococcus gattii WM276] gi|317463358|gb|ADV25094.1| DNA replication activator 1 subunit1 (Replication factor C subunit 1), putative [Cryptococcus gattii WM276] Length = 991 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG ++ + R AQE V + V+ S KT ++VG+N G SKL K ++ + +++ Sbjct: 271 FVFTGEMESLGREDAQELVRRYSGKVTTAPSGKTSYVVVGENAGVSKLNKVKEKKIPMID 330 Query: 711 EEQFLFLLQQ 720 E++FL L++Q Sbjct: 331 EDEFLELIRQ 340 >gi|151945307|gb|EDN63550.1| replication factor C subunit 1 [Saccharomyces cerevisiae YJM789] Length = 861 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 631 EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 E++ IG + + + +VFTG L ++R ++ + GA V+ +S KT ++++ Sbjct: 142 EIASEIGSFPEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVL 201 Query: 691 GDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 GD G KLEK +QL +K ++EE F L+ Sbjct: 202 GDEAGPKKLEKIKQLKIKAIDEEGFKQLI 230 >gi|190345075|gb|EDK36893.2| hypothetical protein PGUG_00991 [Meyerozyma guilliermondii ATCC 6260] Length = 708 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTG L + R +A+ Q GA V+ +S KT ++++GD G SK++K + +K + Sbjct: 17 IVFTGVLPNLDRDQAEGLAKQYGAKVTKAISGKTSLVVLGDEAGPSKVQKIKANKIKAIT 76 Query: 711 EEQFLFLLQQ 720 EE FL LL++ Sbjct: 77 EESFLELLRR 86 >gi|326427870|gb|EGD73440.1| DNA ligase [Salpingoeca sp. ATCC 50818] Length = 664 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 3/75 (4%) Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--NP-GSKLE 699 +S I + K+VFTGT + R + ++LGA+V + +S KTD++++G P G+K + Sbjct: 159 TASSIRDLKVVFTGTFESGIRRVVENEASKLGAIVGSSVSSKTDLLVIGGLVRPFGAKED 218 Query: 700 KAQQLGVKIMNEEQF 714 +A LGV+++ E+++ Sbjct: 219 RASDLGVRVIFEKEW 233 >gi|6561410|gb|AAF16907.1|AF173987_5 DNA ligase [Rhodothermus marinus DSM 4252] Length = 154 Score = 51.2 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 3/113 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +EA+ ++A + L + ++ H YY P+I D++YD L + + FP+L Sbjct: 30 LEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDADYDLLMQALRKLEARFPELV-- 87 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 P+ P ++GG KV H P LSL + ED+R + R R ++ Sbjct: 88 -TPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAFGEEDVRVWYERCCRMLAER 139 >gi|146423370|ref|XP_001487614.1| hypothetical protein PGUG_00991 [Meyerozyma guilliermondii ATCC 6260] Length = 708 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTG L + R +A+ Q GA V+ +S KT ++++GD G SK++K + +K + Sbjct: 17 IVFTGVLPNLDRDQAEGLAKQYGAKVTKAISGKTSLVVLGDEAGPSKVQKIKANKIKAIT 76 Query: 711 EEQFLFLLQQ 720 EE FL LL++ Sbjct: 77 EESFLELLRR 86 >gi|190407527|gb|EDV10794.1| replication factor C subunit 1 [Saccharomyces cerevisiae RM11-1a] Length = 861 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTG L ++R ++ + GA V+ +S KT ++++GD G KLEK +QL +K ++ Sbjct: 163 IVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKLEKIKQLKIKAID 222 Query: 711 EEQFLFLL 718 EE F L+ Sbjct: 223 EEGFKQLI 230 >gi|6324791|ref|NP_014860.1| Rfc1p [Saccharomyces cerevisiae S288c] gi|584899|sp|P38630|RFC1_YEAST RecName: Full=Replication factor C subunit 1; Short=Replication factor C1; AltName: Full=Activator 1 95 kDa subunit; AltName: Full=Cell division control protein 44 gi|437274|gb|AAC48916.1| Cdc44p [Saccharomyces cerevisiae] gi|841462|gb|AAC49060.1| Rfc1p [Saccharomyces cerevisiae] gi|1050769|emb|CAA63180.1| CDC44 [Saccharomyces cerevisiae] gi|1420505|emb|CAA99434.1| RFC1 [Saccharomyces cerevisiae] gi|256269587|gb|EEU04869.1| Rfc1p [Saccharomyces cerevisiae JAY291] gi|259149697|emb|CAY86501.1| Rfc1p [Saccharomyces cerevisiae EC1118] gi|285815096|tpg|DAA10989.1| TPA: Rfc1p [Saccharomyces cerevisiae S288c] Length = 861 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTG L ++R ++ + GA V+ +S KT ++++GD G KLEK +QL +K ++ Sbjct: 163 IVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKLEKIKQLKIKAID 222 Query: 711 EEQFLFLL 718 EE F L+ Sbjct: 223 EEGFKQLI 230 >gi|325474100|gb|EGC77288.1| hypothetical protein HMPREF9353_01638 [Treponema denticola F0402] Length = 207 Score = 50.8 bits (120), Expect = 9e-04, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 98/214 (45%), Gaps = 22/214 (10%) Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 D++TL + + ++ G +S +Y +++ ++ ISL FI I +G + Sbjct: 9 DLYTLTVEELAAIDRM------GKLSAEKVYKALHSKKEISLTEFIAGFDIEGIGETMVE 62 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA--VE 626 L + + ++N ++ + D+ ++ + G +++ +V ++ ++ Sbjct: 63 KLEEAGFN------DLNELLRASEADFANVYQF---GQVLSHTLVTNLSILKDEMTGLID 113 Query: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTD 686 ++ P + E V ++ FTG L ++R +A+ V + G V + + + Sbjct: 114 KGYIKIKPQLTSEEGAV---LKGLSFCFTGELNTMKRAQAEALVKEKGGTVKSSVVKGLS 170 Query: 687 IIIVG--DNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ D+ SK +KAQ+LG I+ EE FL L+ Sbjct: 171 YLVTNTPDSGSSKNKKAQELGTAIITEEAFLNLI 204 >gi|148705785|gb|EDL37732.1| replication factor C 1, isoform CRA_a [Mus musculus] Length = 1160 Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 413 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 472 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++G + G SK +KA LG KI++E+ L L++ Sbjct: 473 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 507 >gi|195940543|ref|ZP_03085925.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. EC4024] Length = 98 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 3/101 (2%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114 P ++G + ++ H +P LSL+ +++ E F R+ Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRV 98 >gi|47210904|emb|CAF94208.1| unnamed protein product [Tetraodon nigroviridis] Length = 775 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V TG L+ ++R + + + + G V+ +S+KT ++ G + G SKLEKA+ LG Sbjct: 19 LEGCVFVLTGVLESMERDETKSLIERYGGKVTGNISKKTTYLVQGRDCGVSKLEKAESLG 78 Query: 706 VKIMNEEQFLFLLQ 719 KI++E+ L L++ Sbjct: 79 TKILDEDGLLELIR 92 >gi|148705786|gb|EDL37733.1| replication factor C 1, isoform CRA_b [Mus musculus] Length = 1157 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 409 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 468 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++G + G SK +KA LG KI++E+ L L++ Sbjct: 469 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 503 >gi|257471690|pdb|2K7F|A Chain A, Haddock Calculated Model Of The Complex Between The Brct Region Of Rfc P140 And Dsdna gi|259090084|pdb|2K6G|A Chain A, Solution Structure Of The Dna Binding Brct Domain From The Large Subunit Of Human Replication Factor C Length = 109 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 12 LNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 71 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++G + G SK +KA LG KI++E+ L L++ Sbjct: 72 NYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIR 106 >gi|328770979|gb|EGF81020.1| hypothetical protein BATDEDRAFT_653 [Batrachochytrium dendrobatidis JAM81] Length = 696 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG + R A + V + G V S KT ++VG++PG SKL+K + L +K+++ Sbjct: 26 FVFTGEMPSFSREDATDLVKRYGGRVVGAPSSKTSYVVVGEDPGESKLKKVRDLKLKVLD 85 Query: 711 EEQFLFLLQQ 720 E+ F+ L+ Sbjct: 86 EDSFVNLISS 95 >gi|460932|gb|AAC52140.1| ISRE-binding protein [Mus musculus] Length = 1145 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 397 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 456 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++G + G SK +KA LG KI++E+ L L++ Sbjct: 457 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 491 >gi|405112|gb|AAA21643.1| activator 1 large subunit [Mus musculus] Length = 1131 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 383 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 442 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++G + G SK +KA LG KI++E+ L L++ Sbjct: 443 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 477 >gi|1703056|sp|P35601|RFC1_MOUSE RecName: Full=Replication factor C subunit 1; AltName: Full=A1-P145; AltName: Full=Activator 1 140 kDa subunit; Short=A1 140 kDa subunit; AltName: Full=Activator 1 large subunit; AltName: Full=Activator 1 subunit 1; AltName: Full=Differentiation-specific element-binding protein; AltName: Full=ISRE-binding protein; AltName: Full=Replication factor C 140 kDa subunit; Short=RF-C 140 kDa subunit; Short=RFC140; AltName: Full=Replication factor C large subunit gi|457742|emb|CAA51260.1| replication factor C [Mus musculus] Length = 1131 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 383 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 442 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++G + G SK +KA LG KI++E+ L L++ Sbjct: 443 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 477 >gi|188219597|ref|NP_035388.2| replication factor C subunit 1 [Mus musculus] gi|148705787|gb|EDL37734.1| replication factor C 1, isoform CRA_c [Mus musculus] Length = 1131 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 383 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 442 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++G + G SK +KA LG KI++E+ L L++ Sbjct: 443 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 477 >gi|1022776|gb|AAA79698.1| differentiation specific element binding protein [Mus musculus] Length = 1130 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 383 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 442 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++G + G SK +KA LG KI++E+ L L++ Sbjct: 443 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 477 >gi|54887426|gb|AAH85173.1| Rfc1 protein [Mus musculus] Length = 1132 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 383 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 442 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++G + G SK +KA LG KI++E+ L L++ Sbjct: 443 NYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 477 >gi|149035369|gb|EDL90073.1| replication factor C 1 [Rattus norvegicus] Length = 1131 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 382 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKT 441 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +++G + G SK +KA LG KI++E+ L L++ Sbjct: 442 SYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 476 >gi|255713750|ref|XP_002553157.1| KLTH0D10296p [Lachancea thermotolerans] gi|238934537|emb|CAR22719.1| KLTH0D10296p [Lachancea thermotolerans] Length = 864 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTG L I+R A+ + GA V+ +S KT ++++GD G KLEK +QL +K ++ Sbjct: 167 IVFTGQLPTIERGVAEAIAKRYGARVTKSISSKTSVVVLGDEAGPKKLEKIKQLKIKAID 226 Query: 711 EEQFLFLL 718 E+ F L+ Sbjct: 227 EDGFKQLV 234 >gi|219113609|ref|XP_002186388.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209583238|gb|ACI65858.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 942 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 9/80 (11%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEKAQQ 703 VF+G L + R QE V LG ++ +S T+ ++VG+ GSK ++A Q Sbjct: 206 FVFSGVLPNLSREDGQEMVKTLGGRITGAVSSLTNYLVVGEELEDGRVYTEGSKYKRAVQ 265 Query: 704 LGVKIM-NEEQFLFLLQQYN 722 G I+ EE F LLQQYN Sbjct: 266 EGTHIVQGEEAFYGLLQQYN 285 >gi|189339249|ref|NP_445999.1| replication factor C (activator 1) 1 [Rattus norvegicus] Length = 1131 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 381 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKT 440 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +++G + G SK +KA LG KI++E+ L L++ Sbjct: 441 SYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIR 475 >gi|71018701|ref|XP_759581.1| hypothetical protein UM03434.1 [Ustilago maydis 521] gi|46099339|gb|EAK84572.1| hypothetical protein UM03434.1 [Ustilago maydis 521] Length = 950 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 LVFTG L+ I R +A + + GA +++ S KT +IVG+ G KL+ ++ +K +N Sbjct: 270 LVFTGELESISRDEASDLAKRYGARITSAPSSKTSYVIVGEGAGPKKLDLIRKNNIKTLN 329 Query: 711 EEQFLFLLQ 719 E++FL L++ Sbjct: 330 EDEFLDLIR 338 >gi|309784374|ref|ZP_07679013.1| NAD-dependent DNA ligase OB-fold domain protein [Shigella dysenteriae 1617] gi|308927881|gb|EFP73349.1| NAD-dependent DNA ligase OB-fold domain protein [Shigella dysenteriae 1617] Length = 329 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/348 (20%), Positives = 131/348 (37%), Gaps = 75/348 (21%) Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEFSLQ 312 L+++ GF + T+ V +E+ +R + LP+ DG+V + Sbjct: 5 LKELATAGFTLTQ------TYTRAVKNADEVARVRNEWWKAKLPFVTDGVVVRAA----- 53 Query: 313 KQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 K+ R P W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 54 KEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQ 113 Query: 370 NATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQ 426 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 114 RVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTP 161 Query: 427 PFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P + F S S V C Q + RL S+ ++G Sbjct: 162 PENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLDG 199 Query: 486 LGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+ ++ + FS + + +++N G L+ N Sbjct: 200 IGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFN 247 Query: 544 KRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEINNI 587 + R R++ ++GI + A RS ++ +S + F Q++ I Sbjct: 248 QARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLVSTEQFWQQLPGI 295 >gi|254566547|ref|XP_002490384.1| Replication factor C subunit [Pichia pastoris GS115] gi|238030180|emb|CAY68103.1| Replication factor C subunit [Pichia pastoris GS115] gi|328350779|emb|CCA37179.1| Replication factor C subunit 1 [Pichia pastoris CBS 7435] Length = 908 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTG + I R +A+E + GA V+ +S+KT ++++G G SK++K + +K ++ Sbjct: 228 MVFTGVMPTIDRTQAEELAKRYGAKVTKSVSKKTSVVVLGSEAGPSKVKKIKDFKIKAID 287 Query: 711 EEQFLFLLQ 719 E+ F+ L++ Sbjct: 288 EDGFITLIK 296 >gi|322695637|gb|EFY87442.1| putative replication factor C protein [Metarhizium acridum CQMa 102] Length = 1062 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG LQ I R +AQ V + G V+ S KT +++GD+ G SKL K + G+K ++ Sbjct: 347 FVFTGVLQTIGRDEAQALVKRYGGKVTGQPSSKTSFVVLGDDAGPSKLAKIKSHGIKTID 406 Query: 711 EEQFLFLLQQ 720 E L+++ Sbjct: 407 ENGLFDLIRK 416 >gi|320586272|gb|EFW98951.1| DNA replication factor c subunit [Grosmannia clavigera kw1407] Length = 1507 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 13/103 (12%) Query: 619 PRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVS 678 P N AVE L E +P+ + + VFTG LQ I R + Q V + G V+ Sbjct: 738 PPNAGAVE--LPEGAPNC----------LVGQTFVFTGLLQTISRDEGQALVKRYGGKVT 785 Query: 679 AILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQQ 720 SR T +++GD+ G SKL K QL ++ ++E L+++ Sbjct: 786 TAPSRNTSWVVLGDDAGPSKLAKISQLSLRTIDENGLFELIKR 828 >gi|293374981|ref|ZP_06621276.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909] gi|325843349|ref|ZP_08167932.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1] gi|292646391|gb|EFF64406.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909] gi|325489378|gb|EGC91751.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1] Length = 306 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 14/86 (16%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNP 694 S ++K +VFTGTL+ + R A + ++QLG V + ++RKTD +IV Sbjct: 216 SDVFKHKTVVFTGTLKSMSRLSAIQLISQLGGTVGSSVTRKTDFLIVSHPAVYELQPHEM 275 Query: 695 GSKLEKAQQL-----GVKIMNEEQFL 715 +KL+KA +L ++I+NE +FL Sbjct: 276 STKLKKAIELIYKGQAIQILNESEFL 301 >gi|34764321|ref|ZP_00145153.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27885903|gb|EAA23247.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 68 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 43/68 (63%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 ++ K +FTGTL+ R + +E + +LG + +S+ D +IVG+ GSKL+KAQ+ + Sbjct: 1 MQXKNFLFTGTLKHFTREQIKEEIEKLGGKNLSSVSKNLDYLIVGEKAGSKLKKAQRSTI 60 Query: 707 KIMNEEQF 714 K + EE+ Sbjct: 61 KNITEEEL 68 >gi|50306785|ref|XP_453368.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642502|emb|CAH00464.1| KLLA0D06897p [Kluyveromyces lactis] Length = 835 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTGTL + R ++ + GA V+ +S+ T ++++G+ G KLE ++LG+K ++ Sbjct: 157 IVFTGTLPNLDRSTSENLAKRYGARVTKSISKNTSVVVLGEEAGPKKLENIKKLGIKAID 216 Query: 711 EEQFLFLL 718 EE F L+ Sbjct: 217 EEGFKRLI 224 >gi|322705232|gb|EFY96819.1| putative replication factor C protein [Metarhizium anisopliae ARSEF 23] Length = 1030 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG LQ I R +AQ V + G V+ S KT +++GD+ G SKL K + G+K ++ Sbjct: 313 FVFTGVLQTIGRDEAQALVKRYGGKVTGQPSSKTSFVVLGDDAGPSKLAKIKSHGIKTID 372 Query: 711 EEQFLFLLQQ 720 E L+++ Sbjct: 373 ENGLFDLIRK 382 >gi|74222286|dbj|BAE26945.1| unnamed protein product [Mus musculus] gi|74226849|dbj|BAE27069.1| unnamed protein product [Mus musculus] Length = 584 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 409 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGHDSGQSKSDKAAALGTKILD 468 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 469 EDGLLDLIR 477 >gi|290991775|ref|XP_002678510.1| replication factor C large subunit [Naegleria gruberi] gi|284092123|gb|EFC45766.1| replication factor C large subunit [Naegleria gruberi] Length = 994 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +++K V TG ++ + R + ++ + Q G V+ +S +T ++VGD PG SK++K ++ Sbjct: 279 LKDKSFVITGQMESLDRDEMEDLIKQYGGVIRGNVSGRTSFVVVGDGPGESKMKKVREHK 338 Query: 706 VKIMNEEQFLFLLQQYN 722 K ++E+ L ++ + N Sbjct: 339 TKQLSEDDLLEMIAKSN 355 >gi|159164362|pdb|2EBU|A Chain A, Solution Structure Of The Brct Domain From Human Replication Factor C Large Subunit 1 Length = 112 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 1/80 (1%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLE 699 K + +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK + Sbjct: 17 KGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSD 76 Query: 700 KAQQLGVKIMNEEQFLFLLQ 719 KA LG KI++E+ L L++ Sbjct: 77 KAAALGTKIIDEDGLLNLIR 96 >gi|1066815|gb|AAA81558.1| nonamer binding protein [Mus musculus] Length = 428 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 351 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILD 410 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 411 EDGLLDLIR 419 >gi|237800438|ref|ZP_04588899.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806426|ref|ZP_04593130.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023297|gb|EGI03354.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027539|gb|EGI07594.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 70 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 38/59 (64%) Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +L+++ R A+E + LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L Sbjct: 1 SLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALL 59 >gi|67467166|ref|XP_649703.1| Activator 1 140 kDa subunit [Entamoeba histolytica HM-1:IMSS] gi|56466194|gb|EAL44317.1| Activator 1 140 kDa subunit, putative [Entamoeba histolytica HM-1:IMSS] Length = 718 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQ 703 +E + K V TG ++ R + +EY+ G V+ +S KT ++I G+ G SK+EKA++ Sbjct: 131 NEFQKKNFVLTGVYDELDRDEMKEYIISFGGNVATSISGKTAVLIAGEEAGPSKIEKAKE 190 Query: 704 LGVKIMNEEQFLFLLQQ 720 G+ I +E+ ++Q Sbjct: 191 KGIPIWSEDDVFNYVKQ 207 >gi|323195836|gb|EFZ81008.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] Length = 380 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 83/435 (19%), Positives = 151/435 (34%), Gaps = 84/435 (19%) Query: 215 NPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274 N R+ +G+L R + L F+ + G M +++ L G Sbjct: 17 NARSKVAGMLMRQDNASALNSLGIFIWA-------WPDGPANMPERLSQL---AKAGFSL 66 Query: 275 ANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 + V +E++ R S LP+ DG+V ++ + + R W+ + K Sbjct: 67 TKKYTLAVKDASEVERARQSWLTSALPFVTDGVVIRMAKEPAAQYW--RPGQGDWLAAWK 124 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 + ++ I +G++G +T VA L PV + + + G V Sbjct: 125 YPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNI------------GSVK 172 Query: 390 RG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERH------PDAQPFSFPSFCPICQSRVV 442 R DI GD++LV AG+ IP++ +++ R PD+ S F Sbjct: 173 RWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPVPPDSHFNSLTCFY-------- 224 Query: 443 RDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAF 502 C Q + RL SR A ++G+G+ ++ F Sbjct: 225 -----------------ASATCQEQFISRLVWLGSRSALGLDGMGEASWRALHQTHR--F 265 Query: 503 SIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHV 562 IF+ ++ +I N GF ++ N R R+I ++ I Sbjct: 266 E-----HIFSW---LALTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRWIMAMDIPLT 317 Query: 563 GAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNI 622 A + S + + ++ W L P G+ A ++++ NP+ Sbjct: 318 QAALQASGDRSW----------EQLLMRTEQHWRQL---PSTGERRAGRVIDWRDNPQIK 364 Query: 623 CAVEALLKEVSPSIG 637 L + P G Sbjct: 365 ALSRWLAAQHIPGFG 379 >gi|156087871|ref|XP_001611342.1| hypothetical protein [Babesia bovis T2Bo] gi|154798596|gb|EDO07774.1| conserved hypothetical protein [Babesia bovis] Length = 944 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 18/113 (15%) Query: 630 KEVSPSIGRHEKNVSSE-IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 KEV+P NV+ E + + VFTG L I R E V LG + + +S KT+ + Sbjct: 299 KEVTP---HGASNVNKEKVVGMRFVFTGVLDAIDRDSVVELVRSLGGLTTGSVSSKTNYL 355 Query: 689 IVGD--------NPGSKLEKA------QQLGVKIMNEEQFLFLLQQYNTTLRI 727 + G+ GSK +KA + G++++NE +FL L+ N + R+ Sbjct: 356 VYGEKLEDGRHYTTGSKYKKALEFNKTKDAGIQLLNESEFLALIDYQNVSSRL 408 >gi|260951239|ref|XP_002619916.1| hypothetical protein CLUG_01075 [Clavispora lusitaniae ATCC 42720] gi|238847488|gb|EEQ36952.1| hypothetical protein CLUG_01075 [Clavispora lusitaniae ATCC 42720] Length = 876 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 45/70 (64%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +VFTG L + R A+ Q GA V+ +S+KT ++++G+ G SK++K + +K ++ Sbjct: 149 IVFTGVLPNLDRDAAESIAKQYGARVTKSISKKTSLVVIGEEAGPSKVKKIKDFKIKAIS 208 Query: 711 EEQFLFLLQQ 720 E+ F+ LL++ Sbjct: 209 EDGFIELLRR 218 >gi|410218|gb|AAA16121.1| replication factor C large subunit [Homo sapiens] Length = 1148 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 472 EDGLLNLIR 480 >gi|555972|gb|AAB60452.1| replication factor C large subunit [Mus musculus] Length = 565 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 409 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILD 468 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 469 EDGLLDLIR 477 >gi|32528306|ref|NP_002904.3| replication factor C subunit 1 isoform 1 [Homo sapiens] gi|30354564|gb|AAH51751.1| Replication factor C (activator 1) 1, 145kDa [Homo sapiens] gi|46430941|gb|AAS94325.1| replication factor C (activator 1) 1, 145kDa [Homo sapiens] gi|119613330|gb|EAW92924.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_c [Homo sapiens] gi|168275744|dbj|BAG10592.1| replication factor C subunit 1 [synthetic construct] Length = 1147 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 472 EDGLLNLIR 480 >gi|325296984|ref|NP_001191676.1| replication factor C subunit 1 isoform 2 [Homo sapiens] gi|56757608|sp|P35251|RFC1_HUMAN RecName: Full=Replication factor C subunit 1; AltName: Full=Activator 1 140 kDa subunit; Short=A1 140 kDa subunit; AltName: Full=Activator 1 large subunit; AltName: Full=Activator 1 subunit 1; AltName: Full=DNA-binding protein PO-GA; AltName: Full=Replication factor C 140 kDa subunit; Short=RF-C 140 kDa subunit; Short=RFC140; AltName: Full=Replication factor C large subunit gi|52632416|gb|AAH35297.1| Replication factor C (activator 1) 1, 145kDa [Homo sapiens] gi|119613329|gb|EAW92923.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_b [Homo sapiens] gi|158256656|dbj|BAF84301.1| unnamed protein product [Homo sapiens] Length = 1148 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 472 EDGLLNLIR 480 >gi|114593614|ref|XP_001140603.1| PREDICTED: replication factor C large subunit isoform 2 [Pan troglodytes] Length = 1031 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 296 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 355 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 356 EDGLLNLIR 364 >gi|30353858|gb|AAH51786.1| RFC1 protein [Homo sapiens] gi|167774195|gb|ABZ92532.1| replication factor C (activator 1) 1, 145kDa [synthetic construct] Length = 1148 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 472 EDGLLNLIR 480 >gi|114593610|ref|XP_001140519.1| PREDICTED: replication factor C large subunit isoform 1 [Pan troglodytes] Length = 1119 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 384 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 443 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 444 EDGLLNLIR 452 >gi|114593608|ref|XP_001140765.1| PREDICTED: replication factor C subunit 1 isoform 4 [Pan troglodytes] Length = 1148 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 472 EDGLLNLIR 480 >gi|326919292|ref|XP_003205915.1| PREDICTED: replication factor C subunit 1-like [Meleagris gallopavo] Length = 1212 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK EKA LG Sbjct: 469 LEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASALG 528 Query: 706 VKIMNEEQFLFLLQ 719 KI++E+ L++ Sbjct: 529 TKIIDEDGLFDLVR 542 >gi|119613328|gb|EAW92922.1| replication factor C (activator 1) 1, 145kDa, isoform CRA_a [Homo sapiens] Length = 1032 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 296 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 355 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 356 EDGLLNLIR 364 >gi|114593612|ref|XP_001140686.1| PREDICTED: replication factor C large subunit isoform 3 [Pan troglodytes] Length = 978 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 472 EDGLLNLIR 480 >gi|296908|emb|CAA80355.1| PO-GA [Homo sapiens] gi|2827257|gb|AAB99788.1| DNA binding protein [Homo sapiens] Length = 1147 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 472 EDGLLNLIR 480 >gi|256071069|ref|XP_002571864.1| chromosome transmission fidelity factor [Schistosoma mansoni] gi|238657012|emb|CAZ28094.1| chromosome transmission fidelity factor, putative [Schistosoma mansoni] Length = 1015 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 + TG L+ I+R A + G V L +KTD ++VG PG +K+EKA L +K + Sbjct: 216 FLITGILECIEREDAANLIQNCGGKVLKTLGKKTDYLVVGREPGAAKIEKANNLKIKQIT 275 Query: 711 EEQFLFLLQQYNTTLRIH 728 EE ++++ + +H Sbjct: 276 EEYLFEMIEKSSNVPLVH 293 >gi|332218978|ref|XP_003258636.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 1-like [Nomascus leucogenys] Length = 1148 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 472 EDGLLNLIR 480 >gi|114593616|ref|XP_517154.2| PREDICTED: replication factor C large subunit isoform 5 [Pan troglodytes] Length = 1123 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 472 EDGLLNLIR 480 >gi|109074009|ref|XP_001091287.1| PREDICTED: replication factor C subunit 1 isoform 3 [Macaca mulatta] Length = 1148 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 412 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 471 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 472 EDGLLNLIR 480 >gi|4103934|gb|AAD01890.1| replication factor C [Rattus norvegicus] Length = 1104 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 383 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKT 442 Query: 686 DIIIVG-DNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +++G D+ SK +KA LG KI++E+ L L++ Sbjct: 443 SYLVMGRDSRQSKSDKAAALGTKILDEDGLLDLIR 477 >gi|194209224|ref|XP_001495351.2| PREDICTED: replication factor C (activator 1) 1, 145kDa [Equus caballus] Length = 1176 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 440 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 499 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 500 EDGLLNLIR 508 >gi|296237052|ref|XP_002763589.1| PREDICTED: replication factor C subunit 1, partial [Callithrix jacchus] Length = 827 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 417 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 476 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 477 EDGLLNLIR 485 >gi|3342382|gb|AAC40192.1| VIP-receptor-gene repressor protein [Rattus norvegicus] Length = 656 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT +++G + G SK +KA LG KI++ Sbjct: 407 FVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQSKSDKAAALGTKILD 466 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 467 EDGLLDLIR 475 >gi|311262015|ref|XP_003128976.1| PREDICTED: replication factor C subunit 1-like [Sus scrofa] Length = 1039 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 309 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 368 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++G + G SK KA LG KI++E+ L L++ Sbjct: 369 NYLVMGRDSGQSKSGKAAALGTKIIDEDGLLNLIR 403 >gi|1399917|gb|AAC60361.1| replication factor C large subunit [Anas platyrhynchos] Length = 1145 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK EKA LG Sbjct: 402 LEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASALG 461 Query: 706 VKIMNEEQFLFLLQ 719 KI++E+ L++ Sbjct: 462 TKIIDEDGLFDLVR 475 >gi|57530056|ref|NP_001006456.1| replication factor C subunit 1 [Gallus gallus] gi|53130644|emb|CAG31651.1| hypothetical protein RCJMB04_9c6 [Gallus gallus] Length = 1147 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK EKA LG Sbjct: 404 LEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLG 463 Query: 706 VKIMNEEQFLFLLQ 719 KI++E+ L++ Sbjct: 464 TKIIDEDGLFDLVR 477 >gi|196009297|ref|XP_002114514.1| hypothetical protein TRIADDRAFT_27705 [Trichoplax adhaerens] gi|190583533|gb|EDV23604.1| hypothetical protein TRIADDRAFT_27705 [Trichoplax adhaerens] Length = 716 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 3/70 (4%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVV--SAILSRKTDIIIVGDNPG-SKLEKAQQLGVKI 708 V TG L I+R A E + LG V S +S+KT+ ++VG +PG +KLEKA+ K Sbjct: 11 FVITGVLDTIERETAIELIQSLGGKVNVSGSISKKTNYLVVGRDPGLTKLEKAKNFSTKQ 70 Query: 709 MNEEQFLFLL 718 ++E F L+ Sbjct: 71 LDENSFYDLI 80 >gi|50547051|ref|XP_500995.1| YALI0B16918p [Yarrowia lipolytica] gi|49646861|emb|CAG83248.1| YALI0B16918p [Yarrowia lipolytica] Length = 952 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTGT+ + R + Q V + G V++ +S KT+ +++G++ G K+E+ ++L K ++ Sbjct: 260 FVFTGTMPNLSREEGQAAVKKYGGKVTSSISGKTNCVVLGEDAGPKKIEQIKKLRTKALD 319 Query: 711 EEQFLFLLQ 719 E FL LL+ Sbjct: 320 EAGFLELLR 328 >gi|46105398|ref|XP_380503.1| hypothetical protein FG00327.1 [Gibberella zeae PH-1] Length = 1049 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG LQ I R Q V + G V S KT +++GD+ G SKL K Q L +K ++ Sbjct: 327 FVFTGVLQTISRDDGQALVKRYGGKVVGQPSSKTSFVVLGDDAGPSKLAKIQSLSIKTID 386 Query: 711 EEQFLFLLQQ 720 E L+++ Sbjct: 387 ENGLFDLIRK 396 >gi|189426842|ref|YP_001949941.1| NAD-dependent DNA ligase [Ralstonia phage RSL1] gi|189233154|dbj|BAG41511.1| NAD-dependent DNA ligase [Ralstonia phage RSL1] Length = 625 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 76/313 (24%), Positives = 133/313 (42%), Gaps = 47/313 (15%) Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIE 186 + + K+DGT + + Y G+ RGDG G+D+S + P ++ + IP+ I+ Sbjct: 97 WNVSHKLDGTSLQLAYRGGRPWKLITRGDGALGKDISFFL------PHLVKIGMIPDHIK 150 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYA----NPRNAASGILRR--LNPTDITRYLNFF- 239 V + + + + +AV K +A N R A+G+ R ++P ++ Sbjct: 151 TDALVVVFRCEGIM----PVAVFEKKWAGKYDNARQLANGVFNRQDMHPALADVHMVVLS 206 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 V+G+ + I +AK Q + R L G A +++ E SI Y+ Sbjct: 207 VYGMKQGEGIMYAKRQGFHVVPTRML-----KGRLDAEVLTRLLNKEREA-SI-----YE 255 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKF--AEKQASTRLLDIDIQIGRTGILTPVA 356 +DGL+ + +R P+ + + KF E A + + Q R P Sbjct: 256 MDGLILVPSPRIMSYTSPDR---PKDITAFKFNDEENAAEVPVESVVWQKTRLHRWQPKI 312 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 ++P + G ++TN T HN ++K R I G V V R+G VIPK+V + Sbjct: 313 TIKPTFMDGVMVTNVTAHNPAWMK-----------ERGIGPGAIVKVLRSGGVIPKIVGV 361 Query: 417 IVNER-HPDAQPF 428 + + P P+ Sbjct: 362 VKKGKFQPPPGPY 374 >gi|1335208|emb|CAA49475.1| LLDBP [Homo sapiens] Length = 521 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG KI++ Sbjct: 301 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 360 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 361 EDGLLNLIR 369 >gi|238574191|ref|XP_002387514.1| hypothetical protein MPER_13721 [Moniliophthora perniciosa FA553] gi|215443056|gb|EEB88444.1| hypothetical protein MPER_13721 [Moniliophthora perniciosa FA553] Length = 108 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L R +A + + G V S KTD +I+GDN G SKL ++ G+ +N Sbjct: 5 FVFTGELSAFSREEAVDIAKRFGGRVVGQPSSKTDYVILGDNAGPSKLNAIKKHGLHTLN 64 Query: 711 EEQFLFLL 718 E++FL L+ Sbjct: 65 EDEFLNLI 72 >gi|71027899|ref|XP_763593.1| replication factor C large subunit [Theileria parva strain Muguga] gi|68350546|gb|EAN31310.1| replication factor C large subunit, putative [Theileria parva] Length = 1084 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 15/90 (16%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPG 695 +S IE KK VFTG + I R +A V +LG +V + +S TD ++ GD G Sbjct: 372 TSRIEGKKFVFTGEMG-IDRLEATLRVKKLGGIVVSAVSGVTDYLVYGDRLEDGRPYQSG 430 Query: 696 SKLEKAQQLG------VKIMNEEQFLFLLQ 719 K +KA +L ++++NEEQFL LLQ Sbjct: 431 LKYKKAIELNNKKKRNIQLLNEEQFLQLLQ 460 >gi|254583820|ref|XP_002497478.1| ZYRO0F06446p [Zygosaccharomyces rouxii] gi|238940371|emb|CAR28545.1| ZYRO0F06446p [Zygosaccharomyces rouxii] Length = 841 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 LVFTGTL I+R A+ + GA ++ +S KT +++G+ G K++ ++LG+K ++ Sbjct: 142 LVFTGTLPNIERGVAESIAKRYGARITKSISSKTSAVVLGEEAGPKKVDTIKKLGIKAID 201 Query: 711 EEQFLFLL 718 EE F L+ Sbjct: 202 EEGFKQLI 209 >gi|296122435|ref|YP_003630213.1| hypothetical protein Plim_2188 [Planctomyces limnophilus DSM 3776] gi|296014775|gb|ADG68014.1| Tetratricopeptide TPR_2 repeat protein [Planctomyces limnophilus DSM 3776] Length = 442 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 14/90 (15%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NP 694 ++ ++ +++ FTGTL + +A YV Q G + +S++T +++VGD P Sbjct: 20 TAPLQGERVTFTGTLASMTHREAAGYVEQFGGTFTTQVSQQTTLLVVGDEGWPLEEDGQP 79 Query: 695 GSKLEKAQQL-----GVKIMNEEQFLFLLQ 719 KLE A++L +KI++E ++L L++ Sbjct: 80 SLKLEAARELLERGFPIKILSEPEWLQLIE 109 >gi|224050004|ref|XP_002189560.1| PREDICTED: replication factor C (activator 1) 1, 145kDa [Taeniopygia guttata] Length = 1142 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK EKA LG Sbjct: 397 LEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLG 456 Query: 706 VKIMNEEQFLFLLQ 719 KI++E+ L++ Sbjct: 457 TKIIDEDGLFDLIR 470 >gi|126331819|ref|XP_001374096.1| PREDICTED: similar to Replication factor C (activator 1) 1, 145kDa [Monodelphis domestica] Length = 1347 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 517 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 576 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 +++G + G SK +KA LG KI++E+ L L++ Sbjct: 577 SYLVMGRDSGQSKSDKALALGTKIIDEDGLLDLIR 611 >gi|307690045|ref|ZP_07632491.1| BRCT domain-containing protein [Clostridium cellulovorans 743B] Length = 200 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +E + + FTG R+ QE + GA +S ++ KT +++VG N GSKL+KA + G+ Sbjct: 121 LEGEVVCFTGQ-SDYPRNTMQEIAMKNGAEISNSITLKTTMLVVGLNSGSKLDKAHEKGI 179 Query: 707 KIMNEEQFLFLLQ 719 I+++ +F+ +L Sbjct: 180 SIIDDTEFMKMLH 192 >gi|226286728|gb|EEH42241.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb18] Length = 1066 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G V+ S KT +++GD+ G KLE ++ G+K +N Sbjct: 333 FVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETIKKFGLKTIN 392 Query: 711 EEQFLFLLQQ 720 EE L+++ Sbjct: 393 EEGLFELIRR 402 >gi|291385663|ref|XP_002709319.1| PREDICTED: germ line transcription factor 1-like [Oryctolagus cuniculus] Length = 1152 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 409 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKT 468 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++G + G SK +KA LG I++E+ L L++ Sbjct: 469 NYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIR 503 >gi|225684712|gb|EEH22996.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb03] Length = 1066 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G V+ S KT +++GD+ G KLE ++ G+K +N Sbjct: 333 FVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETIKKFGLKTIN 392 Query: 711 EEQFLFLLQQ 720 EE L+++ Sbjct: 393 EEGLFELIRR 402 >gi|295674213|ref|XP_002797652.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb01] gi|226280302|gb|EEH35868.1| replication factor C subunit 1 [Paracoccidioides brasiliensis Pb01] Length = 1066 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G V+ S KT +++GD+ G KLE ++ G+K +N Sbjct: 333 FVFTGVLSSLGREEGQSLVKRYGGKVTTGPSSKTSYVVLGDDAGPKKLETIKKFGLKTIN 392 Query: 711 EEQFLFLLQQ 720 EE L+++ Sbjct: 393 EEGLFELIRR 402 >gi|302873722|ref|YP_003842355.1| BRCT domain-containing protein [Clostridium cellulovorans 743B] gi|302576579|gb|ADL50591.1| BRCT domain protein [Clostridium cellulovorans 743B] Length = 271 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 +E + + FTG R+ QE + GA +S ++ KT +++VG N GSKL+KA + G+ Sbjct: 192 LEGEVVCFTGQ-SDYPRNTMQEIAMKNGAEISNSITLKTTMLVVGLNSGSKLDKAHEKGI 250 Query: 707 KIMNEEQFLFLLQ 719 I+++ +F+ +L Sbjct: 251 SIIDDTEFMKMLH 263 >gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018] Length = 301 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 14/84 (16%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------PGSKLE 699 N+ +VFTG L+K+ R AQ+ V LG V+ ++++T+ +I+GDN SK + Sbjct: 216 NRHVVFTGKLEKMLRKDAQQIVVNLGGVLDNSVTKQTNYLILGDNDYNAILKGDKSSKHK 275 Query: 700 KAQQL-----GVKIMNEEQFLFLL 718 KA++L ++I++E F LL Sbjct: 276 KAEKLKIEGQDIEIIDEHTFYDLL 299 >gi|118118702|ref|XP_001236329.1| PREDICTED: hypothetical protein, partial [Gallus gallus] Length = 255 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK EKA LG KI++ Sbjct: 171 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLGTKIID 230 Query: 711 EEQFLFLLQ 719 E+ L++ Sbjct: 231 EDGLFDLVR 239 >gi|281342306|gb|EFB17890.1| hypothetical protein PANDA_014667 [Ailuropoda melanoleuca] Length = 1119 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 384 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 443 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++G + G SK +KA LG I++E+ L L++ Sbjct: 444 NYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIR 478 >gi|330921995|ref|XP_003299650.1| hypothetical protein PTT_10692 [Pyrenophora teres f. teres 0-1] gi|311326573|gb|EFQ92247.1| hypothetical protein PTT_10692 [Pyrenophora teres f. teres 0-1] Length = 1085 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG LQK R ++QE V + G V+ S+KT +++G + G SKL K + + +K ++ Sbjct: 360 FVFTGVLQKWGRTESQELVKRHGGKVTTAPSKKTSYVVLGSDAGYSKLAKIRDMNIKTID 419 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 420 EDGLTQLIEK 429 >gi|238764312|ref|ZP_04625263.1| DNA ligase B [Yersinia kristensenii ATCC 33638] gi|238697463|gb|EEP90229.1| DNA ligase B [Yersinia kristensenii ATCC 33638] Length = 318 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 14/154 (9%) Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPR 323 +GFP+ ++ V+++ ++ LP+ DG+V + D+ + A Sbjct: 1 MGFPLTAYYSESVFSGSDVAHWRKL-WFEMPLPFVTDGVVIRQDDEPAGRYW--HATPGN 57 Query: 324 WMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLD 383 W ++ K+ Q T + DI +GRTG +T + ++ PV I ++ +I+ ++ Sbjct: 58 WSVAWKYPPPQQITEIKDIHFTVGRTGKVTAILQVVPVKI-----------DDKWIRRVN 106 Query: 384 ASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 DI GD+V + AG IP++ +++ Sbjct: 107 VGSIARWKQWDIVPGDQVTITLAGLGIPRLDNVV 140 >gi|189200012|ref|XP_001936343.1| replication factor C subunit 1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983442|gb|EDU48930.1| replication factor C subunit 1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1096 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG LQK R ++QE V + G V+ S+KT +++G + G SKL K + + +K ++ Sbjct: 358 FVFTGVLQKWGRTESQELVKRHGGKVTTAPSKKTSYVVLGSDAGPSKLAKIRDMNIKTID 417 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 418 EDGLTQLIEK 427 >gi|73951876|ref|XP_536259.2| PREDICTED: similar to replication factor C large subunit [Canis familiaris] Length = 1145 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 383 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 442 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++G + G SK +KA LG I++E+ L L++ Sbjct: 443 NYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIR 477 >gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019] gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019] Length = 307 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 14/84 (16%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------PGSKLE 699 N+ +VFTG L+K+ R AQ+ V LG V+ ++++T+ +I+GDN SK + Sbjct: 222 NRHVVFTGKLEKMLRKDAQQIVVNLGGVLDNSVTKQTNYLILGDNDYNAILKGDKSSKHK 281 Query: 700 KAQQL-----GVKIMNEEQFLFLL 718 KA++L ++I++E F LL Sbjct: 282 KAEKLKIEGQDIEIIDEHTFYDLL 305 >gi|213402719|ref|XP_002172132.1| replication factor C subunit 1 [Schizosaccharomyces japonicus yFS275] gi|212000179|gb|EEB05839.1| replication factor C subunit 1 [Schizosaccharomyces japonicus yFS275] Length = 930 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710 V TG L+ + R +A + + Q G V+ S KTD +++GDN G K+E + ++ ++ Sbjct: 223 FVITGILETLTRQEAGDLIKQYGGKVTGAPSTKTDFVVLGDNAGPRKVETIKTHNIRAID 282 Query: 711 EEQFLFLLQQ 720 E+ LFL+ Sbjct: 283 EDGLLFLISH 292 >gi|301779603|ref|XP_002925218.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 1-like [Ailuropoda melanoleuca] Length = 1146 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 628 LLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 L +E ++G E K + +E V TG L+ I+R +A+ + + G V+ +S+KT Sbjct: 385 LNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKT 444 Query: 686 DIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + +++G + G SK +KA LG I++E+ L L++ Sbjct: 445 NYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIR 479 >gi|164658055|ref|XP_001730153.1| hypothetical protein MGL_2535 [Malassezia globosa CBS 7966] gi|159104048|gb|EDP42939.1| hypothetical protein MGL_2535 [Malassezia globosa CBS 7966] Length = 850 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710 LVFTG L I R A + + GA V+ S KT +++GD G+ KLE Q+ +K ++ Sbjct: 164 LVFTGELSSISREDAIDLAKRYGAKVTTAPSSKTSYVVLGDGAGAKKLETIQKNKLKTVD 223 Query: 711 EEQFLFLLQQ 720 E+ FL L+ + Sbjct: 224 EDGFLALIAE 233 >gi|321469644|gb|EFX80623.1| hypothetical protein DAPPUDRAFT_318220 [Daphnia pulex] Length = 1045 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 +V TG L+ + R +A+ V + G +S+ T ++ GD+ G SKL KA+ L V +++ Sbjct: 306 IVVTGVLESLHREEAEGLVKKYGGKAPKAVSKNTSYLLAGDDAGPSKLSKAKDLNVPMLS 365 Query: 711 EEQFLFLL 718 E+ FL L+ Sbjct: 366 EDDFLKLI 373 >gi|168050549|ref|XP_001777721.1| predicted protein [Physcomitrella patens subsp. patens] gi|162670941|gb|EDQ57501.1| predicted protein [Physcomitrella patens subsp. patens] Length = 850 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Query: 630 KEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDI 687 +E P G E + + N V +GTL ++R +A+ + G V+ +S+KTD Sbjct: 133 REAPPHKGEKEVPQGADDALANLTFVISGTLDSLEREEAEHLIKSHGGRVTGSVSKKTDY 192 Query: 688 IIVGDN-PGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ ++ G K +KA++LGVK + E+ ++++ Sbjct: 193 LLADEDIGGRKSQKAKELGVKFITEDGLFEMIRK 226 >gi|182626433|ref|ZP_02954185.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721] gi|177908230|gb|EDT70788.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721] Length = 302 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 14/84 (16%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGS-KLEK 700 K +VFTG L + R +A V + G VS+ +S+KT+ +I G +N S KLEK Sbjct: 219 KNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLNKLKENEKSIKLEK 278 Query: 701 AQQL-----GVKIMNEEQFLFLLQ 719 A+ L +KI+NEE+FL +++ Sbjct: 279 AENLIKENFDIKIINEEEFLSIIE 302 >gi|297467831|ref|XP_002705355.1| PREDICTED: germ line transcription factor 1-like, partial [Bos taurus] Length = 183 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V TG L+ I+R +A+ + + G V+ +S+KT+ +++G + G SK +KA LG Sbjct: 6 LEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALG 65 Query: 706 VKIMNEEQFLFLLQ 719 I++E+ L L++ Sbjct: 66 TNIIDEDGLLNLIR 79 >gi|302923420|ref|XP_003053672.1| hypothetical protein NECHADRAFT_30719 [Nectria haematococca mpVI 77-13-4] gi|256734613|gb|EEU47959.1| hypothetical protein NECHADRAFT_30719 [Nectria haematococca mpVI 77-13-4] Length = 1042 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG LQ I R + Q V + G V S KT +++GD+ G SKL K + G+K ++ Sbjct: 320 FVFTGVLQTIGRDEGQALVKRYGGKVVGQPSSKTSFVVLGDDAGPSKLAKIKSHGIKTID 379 Query: 711 EEQFLFLLQQ 720 E L+++ Sbjct: 380 ENGLFDLIRK 389 >gi|1816524|gb|AAB42062.1| DNA ligase [Escherichia coli] Length = 90 Score = 47.8 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIE 105 P ++G + ++ H +P LSL+ +++ E Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEE 89 >gi|170724912|ref|YP_001758938.1| BRCT domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810259|gb|ACA84843.1| BRCT domain protein [Shewanella woodyi ATCC 51908] Length = 209 Score = 47.8 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 641 KNVSSEIENKKLVFTGTLQKIQ-RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKL 698 +N E E++ +V TG + + R + E + LGA + + +S+KT +++ G G SKL Sbjct: 127 ENPVIEWEDQNIVLTGKFENYESRDELAEELEDLGANIRSSISKKTTLLVTGLRVGPSKL 186 Query: 699 EKAQQLGVKIMNEEQFL 715 EKA+ LGV+I+ E + + Sbjct: 187 EKAKSLGVRIITENELM 203 >gi|320179984|gb|EFW54926.1| DNA ligase , LigB [Shigella boydii ATCC 9905] gi|332084828|gb|EGI90011.1| NAD-dependent DNA ligase adenylation domain protein [Shigella boydii 5216-82] Length = 355 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 74/375 (19%), Positives = 134/375 (35%), Gaps = 71/375 (18%) Query: 224 LRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIV 282 + R +D L FV ++ + L+++ GF + R + Sbjct: 1 MMRQGNSDTLNSLAVFVWAWPDGPQLMT----DRLKELATAGFTLTQTYTRAVKNADEVA 56 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP---RWMISHKFAEKQASTRL 339 NE R LP+ DG+V + K+ R P W+++ K+ + Sbjct: 57 HVRNEWWKAR--LPFVTDGVVVRA-----AKEPESRHWLPGQAEWLVAWKYQPVAQVAEV 109 Query: 340 LDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVG 398 I +G++G ++ VA L PV + + + G V R DI G Sbjct: 110 KAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNI------------GSVRRWQEWDIAPG 157 Query: 399 DRVLVKRAGEVIPKVVDIIVN--ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAA 455 D++LV AG+ IP++ D++ ER P + F S S V Sbjct: 158 DQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDV-------------- 203 Query: 456 HRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTL 513 C Q + RL S+ ++G+G+ ++ + FS + Sbjct: 204 --------CQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLL------- 248 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI----RHVGAEIARS 569 + +++N G L+ N R R++ ++GI + A RS Sbjct: 249 -----LTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERS 303 Query: 570 LAKYYLSYQNFAQEI 584 ++ S + F Q++ Sbjct: 304 WSQLLFSTEQFWQQL 318 >gi|224011579|ref|XP_002295564.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209583595|gb|ACI64281.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 649 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 9/81 (11%) Query: 647 IENKKLVFTGTLQKIQ--------RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SK 697 + K++V TGT ++ + + +E + G V+ +S KTD +IVG +PG SK Sbjct: 536 LNGKRVVLTGTFPEVGGGTGLNAGKDRMKEMIESFGGKVTGSVSGKTDYLIVGRDPGASK 595 Query: 698 LEKAQQLGVKIMNEEQFLFLL 718 + KA Q G+ +MN Q LL Sbjct: 596 VGKAHQRGLPLMNILQLQHLL 616 >gi|300939286|ref|ZP_07153960.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 21-1] gi|300455793|gb|EFK19286.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli MS 21-1] Length = 329 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 69/345 (20%), Positives = 128/345 (37%), Gaps = 75/345 (21%) Query: 258 LQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEFSLQ 312 L+++ GF + T+ V +E+ +R + LP+ DG+V + Sbjct: 5 LKELATAGFTLTQ------TYTRAVKNADEVARVRNEWWKAKLPFVTDGVVVRAA----- 53 Query: 313 KQLGERARSP---RWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 K+ R P W+++ K+ + I +G++G ++ VA L PV + + Sbjct: 54 KEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQ 113 Query: 370 NATLHNEDYIKGLDASGKVMRGGR-DIRVGDRVLVKRAGEVIPKVVDIIVN--ERHPDAQ 426 + G V R DI GD++LV AG+ IP++ D++ ER Sbjct: 114 RVNI------------GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTP 161 Query: 427 PFS-FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P + F S S V C Q + RL S+ ++G Sbjct: 162 PENRFNSLTCYFASDV----------------------CQEQFISRLVWLGSKQVLGLDG 199 Query: 486 LGKQQLDFFFKSE--DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +G+ ++ + FS + + +++N G L+ N Sbjct: 200 IGEAGWRALHQTHRFEHIFSWLL------------LTPEQLQNTPGIAKSKSAQLWHQFN 247 Query: 544 KRRNISLERFIFSLGI----RHVGAEIARSLAKYYLSYQNFAQEI 584 R R++ ++GI + A RS ++ S + F Q++ Sbjct: 248 LARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQL 292 >gi|213421635|ref|ZP_03354701.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 325 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 68/333 (20%), Positives = 123/333 (36%), Gaps = 61/333 (18%) Query: 291 IRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTG 350 + S LP+ DG+V ++ + + R W+ + K+ ++ I +G++G Sbjct: 33 LTSALPFVTDGVVIRMAKEPASQYW--RPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSG 90 Query: 351 ILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEV 409 +T VA L PV + + + G V R DI GD++LV AG+ Sbjct: 91 KITVVASLVPVILDDKRVQRVNI------------GSVKRWEAWDIAPGDQILVSLAGQG 138 Query: 410 IPKVVDIIV--NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQ 467 IP++ +++ ER P S N T +A C Q Sbjct: 139 IPRLDEVVWRSRERSKPVPPGS--------------HFNSLTCFYASA-------TCQEQ 177 Query: 468 QLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENI 527 + RL SR A ++G+G+ ++ F IF+ ++ +I N Sbjct: 178 FISRLVWLGSRSALGLDGMGEASWRALHQTHR--FE-----HIFSW---LALTSAQIANT 227 Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 G ++ N R S R+I ++ I A + S + + + Sbjct: 228 PGVAKGKSEQIWRQFNLARRQSFTRWIMAMDIPLTQAALQASGDRSW----------EQL 277 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620 + W L P G+ A ++++ NP+ Sbjct: 278 LMRTEQHWRQL---PATGERRAGRVIDWRNNPQ 307 >gi|253742407|gb|EES99241.1| Replication factor C, subunit 1 [Giardia intestinalis ATCC 50581] Length = 886 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 651 KLVF--TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707 KL+F TG L+ + + Y+ LG V+ +S KT +IVGD+PG +KL A+ V+ Sbjct: 177 KLIFVRTGNLRTMSDTDMKLYIANLGGTVTTSVSGKTSYLIVGDDPGATKLRDAKAKFVR 236 Query: 708 IMNEEQFLFLL 718 I++E++F L+ Sbjct: 237 IISEKEFYDLI 247 >gi|308160758|gb|EFO63231.1| Replication factor C, subunit 1 [Giardia lamblia P15] Length = 887 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 28/159 (17%) Query: 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK 630 A +L A E N IAH I PL+ + A I P N E + Sbjct: 108 ADIFLDVFQSAAESLNPIAH--------IERPLIDEPFANLI------PAN---TEQNKR 150 Query: 631 EVSPSIGRHEKNVSSEI--------ENKKLVF--TGTLQKIQRHKAQEYVTQLGAVVSAI 680 E +P R +V+ E KL+F TG L+ + + YVT LG V+ Sbjct: 151 EANPYNSRTNASVNYETLRPRGLVSSLSKLIFVRTGNLRTMSDTDFKLYVTNLGGTVTTA 210 Query: 681 LSRKTDIIIVGDNPG-SKLEKAQQLGVKIMNEEQFLFLL 718 +S +T ++VGD+PG +K+ A+ V+I++E++F L+ Sbjct: 211 VSGRTSYLVVGDDPGATKIRDAKAKFVRIISEKEFYNLV 249 >gi|332084531|gb|EGI89726.1| NAD-dependent DNA ligase adenylation domain protein [Shigella dysenteriae 155-74] Length = 355 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 74/373 (19%), Positives = 134/373 (35%), Gaps = 67/373 (17%) Query: 224 LRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNG-VRQANTFHGIV 282 + R +D L FV ++ + L+++ GF + R + Sbjct: 1 MMRQGNSDTLNSLAVFVWAWPDGPQLMT----DRLKELATAGFTLTQTYTRAVKNADEVA 56 Query: 283 SYYNEMKSIRSTLPYDIDGLVYKV-DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLD 341 NE R LP+ DG+V + E L +A W+++ K+ + Sbjct: 57 HVRNEWWKAR--LPFVTDGVVVRAAKEPESHHWLPGQAE---WLVAWKYQPVAQVAEVKA 111 Query: 342 IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR-DIRVGDR 400 I +G++G ++ VA L PV + + + G V R DI GD+ Sbjct: 112 IQFAVGKSGKISVVASLAPVMLDDKKVQRVNI------------GSVRRWQEWDIAPGDQ 159 Query: 401 VLVKRAGEVIPKVVDIIVN--ERHPDAQPFS-FPSFCPICQSRVVRDLNPKTGKLVAAHR 457 +LV AG+ IP++ D++ ER P + F S S V Sbjct: 160 ILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDV---------------- 203 Query: 458 CTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE--DPAFSIRIPADIFTLQR 515 C Q + RL S+ ++G+G+ ++ + FS + Sbjct: 204 ------CQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLL--------- 248 Query: 516 RQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGI----RHVGAEIARSLA 571 + +++N G L+ N R R++ ++GI + A RS + Sbjct: 249 ---LTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWS 305 Query: 572 KYYLSYQNFAQEI 584 + S + F Q++ Sbjct: 306 QLLFSTEQFWQQL 318 >gi|149640658|ref|XP_001512744.1| PREDICTED: similar to Replication factor C (activator 1) 1, 145kDa [Ornithorhynchus anatinus] Length = 1233 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V TG L+ I+R +A+ + + G V+ +S++T +++G + G SK +KA LG Sbjct: 490 LEGLTFVITGVLESIERDEAKCLIERHGGKVTGNVSKRTSYLVMGRDSGQSKSDKASALG 549 Query: 706 VKIMNEEQFLFLLQ 719 KI++E+ L L++ Sbjct: 550 TKIIDEDGLLNLIR 563 >gi|241111852|ref|XP_002399407.1| replication factor C large subunit, putative [Ixodes scapularis] gi|215492969|gb|EEC02610.1| replication factor C large subunit, putative [Ixodes scapularis] Length = 706 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 LV TG L+ I+R + + + GA V+ +SR T ++ G + G +KL KA++ VKI++ Sbjct: 11 LVITGVLECIERDDTRALLERCGAKVTQSVSRNTTYLVAGRDSGPAKLRKAEECKVKILD 70 Query: 711 EEQFLFLLQ 719 E+ F L++ Sbjct: 71 EDGFFELIE 79 >gi|169830139|ref|YP_001700297.1| DNA polymerase III [Lysinibacillus sphaericus C3-41] gi|168994627|gb|ACA42167.1| DNA polymerase III [Lysinibacillus sphaericus C3-41] Length = 126 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 8/78 (10%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---GSKLEKAQQL- 704 +K++VFTG L K+ R +A ++V G + ++++TD II+GD +K KA+QL Sbjct: 41 HKQIVFTGALSKMTRSEAAKHVKACGGFLQGTVTQQTDFIILGDKRRGISTKQRKAEQLI 100 Query: 705 ----GVKIMNEEQFLFLL 718 ++I+ E FL+++ Sbjct: 101 NLGQDIQILIESDFLWII 118 >gi|39942248|ref|XP_360661.1| hypothetical protein MGG_03204 [Magnaporthe oryzae 70-15] gi|145015808|gb|EDK00298.1| hypothetical protein MGG_03204 [Magnaporthe oryzae 70-15] Length = 1084 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 5/78 (6%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L+ I R +AQ V + G V+ S KT +++GD+ G SKL K +Q +K ++ Sbjct: 349 FVFTGLLKTIGREEAQALVKRYGGKVTGAPSGKTSFVVLGDDAGPSKLAKIKQHRLKTID 408 Query: 711 EEQFLFLLQQYNTTLRIH 728 E L+ +TL H Sbjct: 409 EVGLFHLI----STLPAH 422 >gi|159477641|ref|XP_001696917.1| DNA replication factor C complex subunit 1 [Chlamydomonas reinhardtii] gi|158274829|gb|EDP00609.1| DNA replication factor C complex subunit 1 [Chlamydomonas reinhardtii] Length = 1182 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + K V +G L + R +A +Y+ + G V+ +S KT ++VG + G SK KA++ G Sbjct: 390 LTGKTFVISGVLDSLGREEATDYIKRHGGRVTGAVSGKTSFLVVGHHTGRSKYRKAREHG 449 Query: 706 VKIMNEEQFLFLLQ 719 K+++E+ L++ Sbjct: 450 TKVIDEDGLFSLIR 463 >gi|319411789|emb|CBQ73832.1| related to replication factor C protein [Sporisorium reilianum] Length = 954 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 LVFTG L I R +A + + GA ++ S KT +IVG+ G KLE ++ ++ ++ Sbjct: 276 LVFTGELTSISRDEATDLAKRYGARITGAPSSKTSYVIVGEGAGPKKLESIKKNKIETLD 335 Query: 711 EEQFLFLLQ 719 E+ FL L++ Sbjct: 336 EDAFLDLIR 344 >gi|257059000|ref|YP_003136888.1| BRCT domain protein [Cyanothece sp. PCC 8802] gi|256589166|gb|ACV00053.1| BRCT domain protein [Cyanothece sp. PCC 8802] Length = 569 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 8/116 (6%) Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTLQKIQRHKA 666 I E + + + E + EV+P E SS EN KK+V G+L ++ R +A Sbjct: 454 TIAEVTEEEKVLPQEETTIAEVTPE----ESQESSAKENPLSGKKVVIAGSLSQMTREEA 509 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + Y+ + G +++ LS KT I++G+ PG K++KA +LGV + E QF+ LL+ N Sbjct: 510 RGYLQKAGGSLTSSLSSKTHYIVIGNAPGDKVKKAHKLGVTQLTETQFMDLLKSAN 565 >gi|168215255|ref|ZP_02640880.1| exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|168216790|ref|ZP_02642415.1| exonuclease family protein [Clostridium perfringens NCTC 8239] gi|170713347|gb|EDT25529.1| exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|182381117|gb|EDT78596.1| exonuclease family protein [Clostridium perfringens NCTC 8239] Length = 302 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 34/204 (16%) Query: 533 VSVTNLYDSI-NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 V N Y S+ N + E F H G E AR+ A L N ++ Sbjct: 116 VMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARACANILL---NICKD-------- 163 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--EN 649 L + V + D +A I Y+N + K S ++ EK EI + Sbjct: 164 ----LDIESVEELSDKLAIRIGAVYENGYKSSGRKGECK-YSSNLRLKEKKKDGEISLKC 218 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGS-KLEK 700 K +VFTG L + R +A V + G VS+ +S+KT+ +I G +N S KL+K Sbjct: 219 KNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLNKLKENEKSIKLKK 278 Query: 701 AQQL-----GVKIMNEEQFLFLLQ 719 A+ L +KI+NEE+FL +++ Sbjct: 279 AENLIKENFDIKIINEEEFLSIIE 302 >gi|168206308|ref|ZP_02632313.1| exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|170662180|gb|EDT14863.1| exonuclease family protein [Clostridium perfringens E str. JGS1987] Length = 302 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 34/204 (16%) Query: 533 VSVTNLYDSI-NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 V N Y S+ N + E F H G E AR+ A L N ++ Sbjct: 116 VMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARACANILL---NICKD-------- 163 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--EN 649 L + V + D +A I Y+N + K S ++ EK EI + Sbjct: 164 ----LDIESVEELSDKLAIRIGAVYENGYKSSGRKGECK-YSSNLRLKEKKKDGEISLKC 218 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGS-KLEK 700 K +VFTG L + R +A V + G VS+ +S+KT+ +I G +N S KL+K Sbjct: 219 KNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLNKLKENEKSIKLKK 278 Query: 701 AQQL-----GVKIMNEEQFLFLLQ 719 A+ L +KI+NEE+FL +++ Sbjct: 279 AENLIKENFDIKIINEEEFLSIIE 302 >gi|218245952|ref|YP_002371323.1| BRCT domain-containing protein [Cyanothece sp. PCC 8801] gi|218166430|gb|ACK65167.1| BRCT domain protein [Cyanothece sp. PCC 8801] Length = 600 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 8/116 (6%) Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIEN----KKLVFTGTLQKIQRHKA 666 I E + + + E + EV+P E SS EN KK+V G+L ++ R +A Sbjct: 485 TIAEVTEEEKVLPQEETAIAEVTPE----ESQESSAKENPLSGKKVVIAGSLSQMTREEA 540 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + Y+ + G +++ LS KT I++G+ PG K++KA +LGV + E QF+ LL+ N Sbjct: 541 RGYLQKAGGSLTSSLSSKTHYIVIGNAPGDKVKKAHKLGVTQLTETQFMDLLKSAN 596 >gi|18310383|ref|NP_562317.1| DNA polymerase III subunit epsilon [Clostridium perfringens str. 13] gi|18145063|dbj|BAB81107.1| probable DNA polymerase III epsilon chain [Clostridium perfringens str. 13] Length = 302 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 14/84 (16%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGS-KLEK 700 K +VFTG L + R +A V + G VS+ +S+KT+ +I G +N S KL+K Sbjct: 219 KNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLNKLKENEKSIKLKK 278 Query: 701 AQQL-----GVKIMNEEQFLFLLQ 719 A+ L +KI+NEE+FL +++ Sbjct: 279 AENLIKENFDIKIINEEEFLSIIE 302 >gi|110799993|ref|YP_696096.1| DNA polymerase III subunit epsilon [Clostridium perfringens ATCC 13124] gi|168209994|ref|ZP_02635619.1| exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|110674640|gb|ABG83627.1| exonuclease family protein [Clostridium perfringens ATCC 13124] gi|170711840|gb|EDT24022.1| exonuclease family protein [Clostridium perfringens B str. ATCC 3626] Length = 302 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 34/204 (16%) Query: 533 VSVTNLYDSI-NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 V N Y S+ N + E F H G E AR+ A L N ++ Sbjct: 116 VMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARACANILL---NICKD-------- 163 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEI--EN 649 L + V + D +A I Y+N + K S ++ EK EI + Sbjct: 164 ----LDIESVEELSDKLAIRIGAVYENGYKSSGRKGECK-YSSNLRLKEKKKEGEISLKC 218 Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGS-KLEK 700 K +VFTG L + R +A V + G VS+ +S+KT+ +I G +N S KL+K Sbjct: 219 KNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLITGIRDLNKLKENEKSIKLKK 278 Query: 701 AQQL-----GVKIMNEEQFLFLLQ 719 A+ L +KI+NEE+FL +++ Sbjct: 279 AENLIKENFDIKIINEEEFLSIIE 302 >gi|33861216|ref|NP_892777.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639948|emb|CAE19118.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 249 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 35/204 (17%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +EPKIDG I ++Y G + R G DV+ I I IP L L + I+++RG Sbjct: 76 IEPKIDGIAIALQYRDGTLEKSISR----KGIDVTNKIAEIQDIP--LKLPVSGILQIRG 129 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL--NPTDITRYLNFFVHGLGKTS 247 E++ R P + R ASG +R +P I+ + F + GK + Sbjct: 130 ELFTP--------------NRSPNFSQR-IASGFVRAAAGSPEGIS-FCGFQIIN-GKLN 172 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 QYE +Q ++ LGF + ++ N + + + + Y DG+V K++ Sbjct: 173 ------QYETIQYLKKLGFNTPD-IKSCNYTSQVQVFRKQWLDKKIFTEYPTDGIVVKIN 225 Query: 308 EFSLQKQLGERAR--SPRWMISHK 329 LQ + E+++ P W I+ K Sbjct: 226 SRKLQ-LIREKSKIDYPHWQIAIK 248 >gi|298252856|ref|ZP_06976650.1| NAD-dependent DNA ligase [Gardnerella vaginalis 5-1] gi|297533220|gb|EFH72104.1| NAD-dependent DNA ligase [Gardnerella vaginalis 5-1] Length = 196 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 14/85 (16%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------PGSKLE 699 N+ +VFTG L+K+ R A + V LG V+ ++++T+ +I+GDN SK + Sbjct: 111 NRHVVFTGKLEKMLRKDAMQIVVNLGGVLDNSVTKQTNYLILGDNDYNAILKDEKSSKHK 170 Query: 700 KAQQL-----GVKIMNEEQFLFLLQ 719 KA++L ++I++E F LL+ Sbjct: 171 KAEKLKLEGQDIEIIDERTFYDLLE 195 >gi|72382264|ref|YP_291619.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. NATL2A] gi|72002114|gb|AAZ57916.1| NAD-dependent DNA ligase N-terminus protein [Prochlorococcus marinus str. NATL2A] Length = 228 Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 28/195 (14%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 LEPKI G++I I+Y G+ + +D++ +R++ TIP+ SL I +E++G Sbjct: 57 LEPKIIGSIIGIQYINGELNKVI----NKNSQDITESVRSLKTIPK--SLAIKNRLEIQG 110 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 +Y KN + R + + N ++ L F + + + Sbjct: 111 VLYDYKN-----------------LSTRKNETEFIDIQNFISKSKRLKFCAFQICQCN-- 151 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ LQ+++ L F + + N I Y + + Y +GLV K++ Sbjct: 152 --INHFQSLQELKHLNFEIPQ-TQFTNFISDIEIYIQCWREGKLFTSYPTNGLVLKINSR 208 Query: 310 SLQKQLGERARSPRW 324 LQK LGE S W Sbjct: 209 KLQKYLGENNLSIPW 223 >gi|213972533|ref|NP_001135428.1| germ line transcription factor 1 [Nasonia vitripennis] Length = 1100 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + N + TG L ++R +A+E +T+ G + +S+K + II+G+ G SKL KA+ L Sbjct: 335 LANLSFLITGVLDSLERGEAEELITKYGGRMLHSVSKKLNYIIIGEEAGPSKLAKAESLN 394 Query: 706 VKIMNEEQFLFLLQ 719 +K ++E+ L L++ Sbjct: 395 IKKISEDGLLELIR 408 >gi|307152927|ref|YP_003888311.1| BRCT domain-containing protein [Cyanothece sp. PCC 7822] gi|306983155|gb|ADN15036.1| BRCT domain protein [Cyanothece sp. PCC 7822] Length = 753 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIM 709 KK V GTL K+ R + + + + G +++ S KTD I+VG PG+K +KAQ+ + Sbjct: 678 KKFVIVGTLSKLNRDQVKSIIQEAGGQLTSSPSSKTDYILVGKAPGTKAKKAQKNRAATL 737 Query: 710 NEEQFLFLL 718 +E QF+ LL Sbjct: 738 SELQFIELL 746 >gi|320179985|gb|EFW54927.1| DNA ligase , LigB [Shigella boydii ATCC 9905] Length = 140 Score = 45.8 bits (107), Expect = 0.027, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + +R I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISK 195 E+++ + Sbjct: 125 EIFLKR 130 >gi|213025273|ref|ZP_03339720.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 266 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 61/281 (21%), Positives = 109/281 (38%), Gaps = 51/281 (18%) Query: 215 NPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQ 274 N R+ A+G+L R + L F+ + G M +++ L G Sbjct: 19 NARSKAAGMLMRQDNASALNSLGIFIWA-------WPDGPANMPERLSQL---AKAGFSL 68 Query: 275 ANTFHGIVSYYNEMKSIR-----STLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 + V +E++ R S LP+ DG+V ++ + + R W+ + K Sbjct: 69 TKKYSLAVKDASEVERARQSWLTSALPFVTDGVVIRMAKEPASQYW--RPGQGDWLAAWK 126 Query: 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVM 389 + ++ I +G++G +T VA L PV + + + + +K +A Sbjct: 127 YPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNIGS---VKRWEA----- 178 Query: 390 RGGRDIRVGDRVLVKRAGEVIPKVVDIIV--NERHPDAQPFSFPSFCPICQSRVVRDLNP 447 DI GD++LV AG+ IP++ +++ ER P S N Sbjct: 179 ---WDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPVPPGS--------------HFNS 221 Query: 448 KTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 T +A C Q + RL SR A ++G+G+ Sbjct: 222 LTCFYASA-------TCQEQFISRLVWLGSRSALGLDGMGE 255 >gi|158302275|ref|XP_321857.4| AGAP001290-PA [Anopheles gambiae str. PEST] gi|157012871|gb|EAA01207.5| AGAP001290-PA [Anopheles gambiae str. PEST] Length = 1016 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709 + V TG L+ ++R + + + LG V +S+K ++VGD+ G K+ +A++LG+ + Sbjct: 245 QFVITGVLESMERDECAQVIKDLGGKVVGAVSKKCTHMVVGDDAGPKKIAQAEELGIVTL 304 Query: 710 NEEQFLFLLQ 719 +E++ L L++ Sbjct: 305 SEDELLDLIR 314 >gi|154281839|ref|XP_001541732.1| hypothetical protein HCAG_03830 [Ajellomyces capsulatus NAm1] gi|150411911|gb|EDN07299.1| hypothetical protein HCAG_03830 [Ajellomyces capsulatus NAm1] Length = 1066 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G V++ S KT+ +++G + G KLE ++ G+K +N Sbjct: 334 FVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFGLKSIN 393 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 394 EDGLFELIRR 403 >gi|169347247|ref|ZP_02866186.1| exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|169296643|gb|EDS78774.1| exonuclease family protein [Clostridium perfringens C str. JGS1495] Length = 302 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 14/84 (16%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGS-KLEK 700 K +VFTG L + R +A V + G VS+ +S+KT+ ++ G +N S KL+K Sbjct: 219 KNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLVTGIRDLSELKENEKSIKLKK 278 Query: 701 AQQL-----GVKIMNEEQFLFLLQ 719 A+ L +KI+NEE+FL +++ Sbjct: 279 AENLIKENFDIKIINEEEFLSIIE 302 >gi|110802120|ref|YP_698713.1| DNA polymerase III subunit epsilon [Clostridium perfringens SM101] gi|110682621|gb|ABG85991.1| exonuclease family protein [Clostridium perfringens SM101] Length = 302 Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 14/84 (16%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--------DNPGS-KLEK 700 K +VFTG L + R +A V + G VS+ +S+KT+ ++ G +N S KL+K Sbjct: 219 KNVVFTGPLSSMSRGEAIGNVIRCGGFVSSSVSKKTNYLVTGIRDLSELKENEKSIKLKK 278 Query: 701 AQQL-----GVKIMNEEQFLFLLQ 719 A+ L +KI+NEE+FL +++ Sbjct: 279 AENLIKENFDIKIINEEEFLSIIE 302 >gi|240275879|gb|EER39392.1| chromosome transmission fidelity factor [Ajellomyces capsulatus H143] Length = 1071 Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G V++ S KT+ +++G + G KLE ++ G+K +N Sbjct: 339 FVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFGLKSIN 398 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 399 EDGLFELIRR 408 >gi|325093242|gb|EGC46552.1| chromosome transmission fidelity protein [Ajellomyces capsulatus H88] Length = 1071 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G V++ S KT+ +++G + G KLE ++ G+K +N Sbjct: 339 FVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFGLKSIN 398 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 399 EDGLFELIRR 408 >gi|225563290|gb|EEH11569.1| chromosome transmission fidelity factor [Ajellomyces capsulatus G186AR] Length = 1071 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G V++ S KT+ +++G + G KLE ++ G+K +N Sbjct: 339 FVFTGVLDTLGREEGQSLVKRYGGKVTSAPSSKTNYVVLGSDAGPKKLETIRKFGLKSIN 398 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 399 EDGLFELIRR 408 >gi|149178535|ref|ZP_01857123.1| probable O-linked GlcNAc transferase [Planctomyces maris DSM 8797] gi|148842650|gb|EDL57025.1| probable O-linked GlcNAc transferase [Planctomyces maris DSM 8797] Length = 421 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 14/90 (15%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD---------NP 694 S ++ +++VFTGTL + KA E+V + G + +SR+T +++VG+ +P Sbjct: 16 SPALQGERVVFTGTLASMTHQKAGEFVEEHGGQAAQHVSRQTTLLVVGEEGWPLEADGSP 75 Query: 695 GSKLEKAQQL-----GVKIMNEEQFLFLLQ 719 L AQ+L ++I+ E +L L++ Sbjct: 76 SVNLTHAQELIAEGVAIQIIKESDWLALIE 105 >gi|312371248|gb|EFR19483.1| hypothetical protein AND_22348 [Anopheles darlingi] Length = 1111 Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E + V TG L+ ++R + + + LG V +S+K ++VGD+ G KL +A+ LG Sbjct: 281 LEGLQFVITGVLESMERDECAQVIKDLGGKVVGAVSKKVTHMVVGDDCGPKKLSQAEDLG 340 Query: 706 VKIMNEEQFLFLLQQ 720 + ++E+ L+++ Sbjct: 341 IPTLSEDALFDLIRE 355 >gi|255078488|ref|XP_002502824.1| predicted protein [Micromonas sp. RCC299] gi|226518090|gb|ACO64082.1| predicted protein [Micromonas sp. RCC299] Length = 917 Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E +V +G L ++R +A++YV + G V++ +S KT ++VG + G SK KA+Q G Sbjct: 207 LEGVTVVVSGVLDSLEREEAEDYVKRHGGKVTSTVSGKTTYLLVGMDCGKSKYNKAKQHG 266 Query: 706 VKIMNEEQFLFLL 718 +++E+ ++ Sbjct: 267 TTLIDEDGLFAMV 279 >gi|124025829|ref|YP_001014945.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. NATL1A] gi|123960897|gb|ABM75680.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. NATL1A] Length = 228 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 28/195 (14%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 LEPKI G++I I+Y G+ + +D++ +R++ TIP+ SL I +E++G Sbjct: 57 LEPKIIGSIIGIQYINGELNKVI----NKNSQDITESVRSLKTIPK--SLAIKNRLEIQG 110 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 +Y +KN + R + + N ++ L F + + + Sbjct: 111 VLYDNKN-----------------LSTRKNETEFIDIQNFISKSKRLKFCAFQICQCN-- 151 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ LQ+++ L F + + N I Y + + Y +GLV K++ Sbjct: 152 --INHFQSLQELKHLNFEIPQ-TQFTNFISDIEIYLQCWREGKLFTSYPTNGLVLKINSR 208 Query: 310 SLQKQLGERARSPRW 324 LQK LG+ S W Sbjct: 209 KLQKYLGKNNLSIPW 223 >gi|218441295|ref|YP_002379624.1| BRCT domain protein [Cyanothece sp. PCC 7424] gi|218174023|gb|ACK72756.1| BRCT domain protein [Cyanothece sp. PCC 7424] Length = 783 Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 636 IGRHEKNVSSE--IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 I EK+ S+ I+ KK V G++ K+ R + + + + G V + KTD I+VG Sbjct: 692 IAEPEKDTKSDHPIQGKKFVILGSIAKLSREQIKSIIQEAGGQVINTPNSKTDYIVVGKA 751 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLL 718 PGSKL+KAQ++ ++E QF+ LL Sbjct: 752 PGSKLKKAQKIKATNLSEAQFINLL 776 >gi|239610551|gb|EEQ87538.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis ER-3] Length = 1068 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G V++ S KT +++G++ G KLE ++ G+K +N Sbjct: 338 FVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKTSYVVLGNDAGPKKLETIRKFGLKTIN 397 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 398 EDGLFELIRR 407 >gi|327349015|gb|EGE77872.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis ATCC 18188] Length = 1065 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G V++ S KT +++G++ G KLE ++ G+K +N Sbjct: 335 FVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKTSYVVLGNDAGPKKLETIRKFGLKTIN 394 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 395 EDGLFELIRR 404 >gi|261195366|ref|XP_002624087.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis SLH14081] gi|239587959|gb|EEQ70602.1| chromosome transmission fidelity factor [Ajellomyces dermatitidis SLH14081] Length = 1065 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G V++ S KT +++G++ G KLE ++ G+K +N Sbjct: 335 FVFTGVLDTLGREEGQSLVKRYGGKVTSGPSSKTSYVVLGNDAGPKKLETIRKFGLKTIN 394 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 395 EDGLFELIRR 404 >gi|309805852|ref|ZP_07699887.1| NAD-dependent DNA ligase adenylation domain protein [Lactobacillus iners LactinV 03V1-b] gi|308167761|gb|EFO69905.1| NAD-dependent DNA ligase adenylation domain protein [Lactobacillus iners LactinV 03V1-b] Length = 109 Score = 45.1 bits (105), Expect = 0.048, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS+ QA+ E+ L +++ YY P++ D+ YD + ++ + +P L Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLI-- 58 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIW 102 DP+ ++GG L KV H P LS+ ++ Sbjct: 59 -DPDSITQRVGGNTKSDLAKVVHEQPMLSMGDVF 91 >gi|19113399|ref|NP_596607.1| DNA replication factor C complex subunit Rfc1 [Schizosaccharomyces pombe 972h-] gi|30913227|sp|O60182|RFC1_SCHPO RecName: Full=Replication factor C subunit 1; Short=Replication factor C1 gi|3116125|emb|CAA18875.1| DNA replication factor C complex subunit Rfc1 [Schizosaccharomyces pombe] Length = 934 Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710 V TG L+ + R +A + + Q G V+ S +TD I++G+N G K+E +Q + +N Sbjct: 246 FVITGILETLTRQEATDLIKQYGGKVTGAPSVRTDFILLGENAGPRKVETIKQHKIPAIN 305 Query: 711 EEQFLFLL 718 E+ +L+ Sbjct: 306 EDGLFYLI 313 >gi|27922874|gb|AAO25527.1| DNA ligase [Paramecium aurelia] Length = 143 Score = 44.7 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 9/102 (8%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 50 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 108 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTD 231 E+++ + + +M + N R +G++ R + +D Sbjct: 109 EIFLQREGH--IQQQMGGI------NARAKVAGLMXRQDDSD 142 >gi|159111709|ref|XP_001706085.1| Replication factor C, subunit 1 [Giardia lamblia ATCC 50803] gi|157434178|gb|EDO78411.1| Replication factor C, subunit 1 [Giardia lamblia ATCC 50803] Length = 890 Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 651 KLVF--TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVK 707 KL+F TG L+ + + YV LG V+ +S +T ++VGD+PG +K+ A+ V+ Sbjct: 179 KLIFVRTGNLRTMSDTDFKLYVANLGGTVTTAVSGRTSYLVVGDDPGVTKIRDAKAKFVR 238 Query: 708 IMNEEQFLFLL 718 I++E++F L+ Sbjct: 239 IISEKEFYDLV 249 >gi|156065801|ref|XP_001598822.1| hypothetical protein SS1G_00911 [Sclerotinia sclerotiorum 1980] gi|154691770|gb|EDN91508.1| hypothetical protein SS1G_00911 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1047 Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L I R + E V + G ++ S KT+ +++G + G SKL K ++L +K ++ Sbjct: 312 FVFTGVLNTISRDEGIELVKKYGGKITGAPSSKTNYVVLGSDAGPSKLRKIRELKIKSVD 371 Query: 711 EEQFLFLLQ 719 EE +++ Sbjct: 372 EEGLFAIIK 380 >gi|213649438|ref|ZP_03379491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 35 Score = 44.7 bits (104), Expect = 0.058, Method: Composition-based stats. Identities = 18/35 (51%), Positives = 27/35 (77%) Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMI 326 R + ++IDG+V KVDE +LQ++LG +R+PRW I Sbjct: 1 RHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAI 35 >gi|227894105|ref|ZP_04011910.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047] gi|227864083|gb|EEJ71504.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047] Length = 183 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 5/107 (4%) Query: 619 PRNICAVEAL-LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVV 677 P+N+ + LK++ ++++ S+ K + TGTL R + + + +G Sbjct: 77 PKNLKKKSSFTLKDIPGDSTKNDE--SNAFYGKNVSATGTLTNYTRKEIGQIINNIGGKF 134 Query: 678 SAILSRKTDIIIVGD--NPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + TD +IVG+ P +K +KA++LG+ I++E FL ++ Y+ Sbjct: 135 QMNPGKSTDYLIVGNLNKPSAKQKKAEKLGIPILSENDFLSMIAGYD 181 >gi|167519801|ref|XP_001744240.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777326|gb|EDQ90943.1| predicted protein [Monosiga brevicollis MX1] Length = 613 Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 626 EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKT 685 EA K S + +K +S ++ +VFTGT R + + G V +S T Sbjct: 233 EAAPKPKSAKVQPGQKKATS-TKSLTVVFTGTFTGGTRKEIEAQAVAAGHHVVGKVSGNT 291 Query: 686 DIIIVGD--NP-GSKLEKAQQLGVKIMNEEQFLFLL 718 D+++VG NP G+K++ AQ GVK+++E Q+ L Sbjct: 292 DVLVVGGAKNPQGAKVDDAQAKGVKVLSEPQWAMRL 327 >gi|303283302|ref|XP_003060942.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457293|gb|EEH54592.1| predicted protein [Micromonas pusilla CCMP1545] Length = 949 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 +E V +G L ++R +A++++ + G V++ +S KT ++VG + G SK KA+ +G Sbjct: 224 LEGCTFVVSGVLDSLERDEAEDFIKRHGGKVTSAVSGKTTYLLVGMDCGKSKYAKAKSVG 283 Query: 706 VKIMNEEQFLFLLQ 719 +M+E+ +++ Sbjct: 284 TPLMDEDGLFAMVE 297 >gi|32396677|gb|AAP49295.1| NAD-dependent DNA ligase [Meiothermus ruber] Length = 99 Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%) Query: 45 DSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK-VTHSIPTLSLEKIWN 103 D+EYD L + A+ A P+L P+ P +G + + F V H SL ++ Sbjct: 1 DAEYDRLLQELRALEEAHPELII---PDSPTQTVGSAILETPFTPVPHPTRMYSLGNAFS 57 Query: 104 IEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKG 146 +D+ F I RF +++ + LE KIDG + + YE+G Sbjct: 58 QDDIADFEASINRFLGREESRE--YVLEYKIDGLSVNLIYEEG 98 >gi|254526714|ref|ZP_05138766.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus marinus str. MIT 9202] gi|221538138|gb|EEE40591.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus marinus str. MIT 9202] Length = 249 Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 +++PKIDG I IRY GKF A + +G DVS+ I+ I +P + I ++ Sbjct: 74 LSIQPKIDGCAIAIRYINGKFNKAITK----TGFDVSSKIKQIKNVPDCIP--IKRDFQI 127 Query: 188 RGEVYIS 194 RGE+Y + Sbjct: 128 RGELYAT 134 >gi|309810273|ref|ZP_07704115.1| exonuclease [Dermacoccus sp. Ellin185] gi|308435765|gb|EFP59555.1| exonuclease [Dermacoccus sp. Ellin185] Length = 534 Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust. Identities = 40/201 (19%), Positives = 81/201 (40%), Gaps = 25/201 (12%) Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 + RR++ L + + GAE+ + L+ A + ++A L + + Sbjct: 121 VAARRHLRLPSYRLPFVLDAYGAEVNDH--HHALADAEAAGRVAVLMAQQ----LGVTSI 174 Query: 602 PL----VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 P+ VG +I + + +I ++ + + S + + +VFTG Sbjct: 175 PILAESVGTVIGHMSADQFTGSVSIATARGGSAALALPDANPDADPSGYLYGRTVVFTGA 234 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-NPGSKLEKAQQLG----------- 705 L + R A + V G + ++KT+++++GD NP S +A G Sbjct: 235 LMSMTRQMAWDAVADAGGQPAPTTTKKTNVLVIGDFNPASLRPRANVSGKAAKAFALQDK 294 Query: 706 ---VKIMNEEQFLFLLQQYNT 723 +++M E FL +L +T Sbjct: 295 GQDIELMTEADFLQVLDGVST 315 >gi|229175172|ref|ZP_04302688.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3] gi|228608308|gb|EEK65614.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3] Length = 280 Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 19/103 (18%) Query: 635 SIGRHEKNVSSEIE------NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 S+ + NV++E+ K +VFTG L R +A + + G + +++ T+ I Sbjct: 178 SLNLKDINVATEVSEDHPFYQKHIVFTGKLNAYTRIEAAQLIANKGGIPQNGINKNTNYI 237 Query: 689 IVGD--------NPGSKLEKAQQL-----GVKIMNEEQFLFLL 718 I+GD N SKLEKA++L ++I++EE+F+ +L Sbjct: 238 IIGDFDNVMIKGNKSSKLEKAEKLIAQGKELEIISEEEFMRML 280 >gi|126651945|ref|ZP_01724137.1| DNA polymerase III subunit epsilon [Bacillus sp. B14905] gi|126591214|gb|EAZ85323.1| DNA polymerase III subunit epsilon [Bacillus sp. B14905] Length = 132 Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 8/78 (10%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---GSKLEKAQQL- 704 +K++VFTG L + R +A + V G + ++++TD +I+GD +K KA+QL Sbjct: 47 HKQIVFTGALSTMTRSEAAKQVKACGGFLQGTVTQQTDFVILGDKRRGISTKQRKAEQLM 106 Query: 705 ----GVKIMNEEQFLFLL 718 ++I+ E+ FL+L+ Sbjct: 107 NYGEDIQILIEDDFLWLI 124 >gi|157413924|ref|YP_001484790.1| hypothetical protein P9215_15911 [Prochlorococcus marinus str. MIT 9215] gi|157388499|gb|ABV51204.1| Hypothetical protein P9215_15911 [Prochlorococcus marinus str. MIT 9215] Length = 249 Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 +++PKIDG I IRY GKF A + +G DVS+ I+ I +P + I ++ Sbjct: 74 LSIQPKIDGCAIAIRYINGKFNKAITK----TGFDVSSKIKQIKNVPDCIP--IKRDFQI 127 Query: 188 RGEVYIS 194 RGE+Y + Sbjct: 128 RGELYAT 134 >gi|331246527|ref|XP_003335896.1| replication factor C subunit 1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309314886|gb|EFP91477.1| replication factor C subunit 1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1470 Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L+ + R AQ + G V+ S KT +++G + G KLE ++ +K + Sbjct: 68 FVFTGELESLSREDAQTLAKRYGGRVTTSPSSKTSFVVLGSDAGPKKLEMIKKHKIKTIT 127 Query: 711 EEQFLFLL 718 E++FL L+ Sbjct: 128 EDEFLNLI 135 >gi|304311282|ref|YP_003810880.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma proteobacterium HdN1] gi|301797015|emb|CBL45228.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma proteobacterium HdN1] Length = 297 Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 16/100 (16%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 PS+ R E N E+ + LVFTG L+ + R +A +G V +++KT I++VGD Sbjct: 194 PSV-RREGNPQGELTGEILVFTGQLE-MSRQEAANIAASVGCEVVPSVTKKTTILVVGDQ 251 Query: 694 PGSKL---------EKAQQ-----LGVKIMNEEQFLFLLQ 719 SKL KA++ L ++I+ E F+ L++ Sbjct: 252 DISKLAGHEKSAKHRKAEELISMGLSIRILGESDFMELVK 291 >gi|326437790|gb|EGD83360.1| hypothetical protein PTSG_03969 [Salpingoeca sp. ATCC 50818] Length = 1046 Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709 K V TG L I+R A+ + G V +S + + I+ G PG SK++KA++L + ++ Sbjct: 342 KFVLTGVLDSIERDTAERLIKDHGGAVQKSVSGRVNYIVAGIEPGPSKMKKAEELKLNVI 401 Query: 710 NEEQFLFLLQ 719 +E+ L++ Sbjct: 402 DEDGLFDLIR 411 >gi|126696079|ref|YP_001090965.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9301] gi|126543122|gb|ABO17364.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9301] Length = 249 Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust. Identities = 72/308 (23%), Positives = 122/308 (39%), Gaps = 66/308 (21%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 LE+ I ++DD Y+ +I D ++D L++ N + N Sbjct: 5 LEERIEWYDD-NYRNGNALISDKQFDQLEK----------------------NLLRTNPN 41 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143 FK + + SLEK +I++ K + R +EPKIDG + ++Y Sbjct: 42 CDYFKKKNKLVLPSLEKD-SIDEFLKGLLADTRL-----------LIEPKIDGCAVALQY 89 Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 G A R G DV++ + I IP L L +++VRGE+Y Sbjct: 90 RDGTLEKAISR----KGTDVTSKLIKIQDIPNNLPLQ--GVLQVRGELY----------- 132 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRC 263 A + P + R ASG LR ++ L+F + ++ QYE + + Sbjct: 133 ---APNQSPNISQR-IASGFLRA--KEGFSQSLSFCAFQILNST----LNQYESKKSLSK 182 Query: 264 LGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR--S 321 LGF + + N + + + Y DG+V K++ LQ + E++ Sbjct: 183 LGFKIPQDI-SCNFTSQVEVFRKRWLEGKLFSEYPTDGIVVKINSRKLQ-LIREKSNLDY 240 Query: 322 PRWMISHK 329 P W ++ K Sbjct: 241 PYWQVAIK 248 >gi|530483|emb|CAA83831.1| DNA ligase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 42 Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 2/44 (4%) Query: 152 ALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 A RG+G GEDV+ +R I +IP L ++ E +EVRGE+Y+SK Sbjct: 1 ATRGNGVIGEDVTTNVRTIKSIP--LKISKKERVEVRGEIYLSK 42 >gi|157117839|ref|XP_001653061.1| replication factor C large subunit, putative [Aedes aegypti] gi|108883325|gb|EAT47550.1| replication factor C large subunit, putative [Aedes aegypti] Length = 1047 Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709 + V TG L+ ++R + + + G V +S+K ++VG++ G SKL KA +LG+ + Sbjct: 285 QFVVTGVLESMERDECAQVIKDFGGKVVGSVSKKLTHMVVGEDAGPSKLAKADELGIPQI 344 Query: 710 NEEQFLFLLQQ 720 +E+ L L+++ Sbjct: 345 SEDDLLDLIRE 355 >gi|85001193|ref|XP_955315.1| replication factor c-related protein [Theileria annulata strain Ankara] gi|65303461|emb|CAI75839.1| replication factor c-related protein, putative [Theileria annulata] Length = 961 Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 15/87 (17%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKL 698 IE KK VFTG + I R +A V +LG +V + +S T+ ++ G+ G K Sbjct: 347 IEGKKFVFTGEMS-IDRLEATFRVKKLGGIVVSAVSGVTNYLVYGEKLEDGRPYQSGVKY 405 Query: 699 EKA------QQLGVKIMNEEQFLFLLQ 719 +KA + L ++++NE+QFL LLQ Sbjct: 406 KKALELNSKKNLNIQLLNEQQFLQLLQ 432 >gi|72382253|ref|YP_291608.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A] gi|72002103|gb|AAZ57905.1| putative NAD-dependent DNA ligase (contains BRCT domain type II) [Prochlorococcus marinus str. NATL2A] Length = 210 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 51/223 (22%) Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176 +W K + S ++PKIDG I +RY+ G+ V A R D E+ IR I +IP Sbjct: 24 WWAKLPEGSTM-VVQPKIDGCAIGLRYKYGQLVDAYTRDDSEIIEN----IRNINSIP-- 76 Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL-----NPTD 231 +S +D L + E+ V P++N + + +L N T Sbjct: 77 ----------------LSIDDSLKVEVELEGVLYTPFSNSKISIEQLLSNSFSEIDNSTS 120 Query: 232 ITRYLNFFVHGLGKTSEIFAKGQYEM--LQKMRCLGFPV-----NNGVRQANTFHGIVSY 284 I L K +IF E+ L +++ GF V + RQ +H Sbjct: 121 I----------LFKAFQIFCSKSDELSDLTQLQNWGFEVPITLRTDDPRQVKRWHS-QWI 169 Query: 285 YNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 NE+ S LP +G+V K + + LG SP W ++ Sbjct: 170 KNEL---FSNLP--TNGIVAKCNSSLTKNFLGSSPSSPNWALA 207 >gi|126696886|ref|YP_001091772.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. MIT 9301] gi|126543929|gb|ABO18171.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. MIT 9301] Length = 249 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 +++PKIDG I IRY GKF A + G DVS+ I+ I +P + I ++ Sbjct: 74 LSIQPKIDGCAIAIRYLDGKFNKAITK----KGFDVSSKIKQIKNVPDYIP--IKRDFQI 127 Query: 188 RGEVYIS 194 RGE+Y + Sbjct: 128 RGELYAT 134 >gi|315050906|ref|XP_003174827.1| hypothetical protein MGYG_02357 [Arthroderma gypseum CBS 118893] gi|311340142|gb|EFQ99344.1| hypothetical protein MGYG_02357 [Arthroderma gypseum CBS 118893] Length = 1055 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G + S KT +++G++ G KLE Q+ +K +N Sbjct: 318 FVFTGVLDSLGREQGQNLVKKFGGKSMSAPSSKTSYVVLGNDAGPKKLETIQKYKLKTIN 377 Query: 711 EEQFLFLLQQ 720 EE L+++ Sbjct: 378 EEGLFELIRK 387 >gi|67611464|ref|XP_667157.1| replication factor C subunit 1 [Cryptosporidium hominis TU502] gi|54658259|gb|EAL36923.1| replication factor C subunit 1 [Cryptosporidium hominis] Length = 854 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 8/78 (10%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--------PGSKLEKAQQ 703 +V TGT R + +++V LG +++ +S +T +I G++ GSK A+ Sbjct: 134 IVVTGTFNSNSRQEIEDFVKILGGKLTSAVSGRTSYLIAGNSLEDGRSIEEGSKYRNAKS 193 Query: 704 LGVKIMNEEQFLFLLQQY 721 GVKI++E++F+ + Y Sbjct: 194 KGVKILSEDEFIEIYTNY 211 >gi|124025816|ref|YP_001014932.1| hypothetical protein NATL1_11091 [Prochlorococcus marinus str. NATL1A] gi|123960884|gb|ABM75667.1| Hypothetical protein NATL1_11091 [Prochlorococcus marinus str. NATL1A] Length = 200 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 51/223 (22%) Query: 117 FWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176 +W K + S ++PKIDG I +RY+ G+ V A R D E+ IR I +IP Sbjct: 14 WWAKLPEGSTM-VVQPKIDGCAIGLRYKYGQLVDAYTRDDSEIIEN----IRNINSIP-- 66 Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL-----NPTD 231 +S +D L + E+ V P++N + + +L N T Sbjct: 67 ----------------LSIDDSLKVEVELEGVLYSPFSNSKISIEQLLSNSFSKIDNSTS 110 Query: 232 ITRYLNFFVHGLGKTSEIFAKGQYEM--LQKMRCLGFPV-----NNGVRQANTFHGIVSY 284 I L K +IF E+ L +++ GF V + RQ +H Sbjct: 111 I----------LFKAFQIFCSKSDELSDLTQLQNWGFEVPITLRTDDPRQVKRWHS-QWI 159 Query: 285 YNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 NE+ S LP +G+V K + + LG SP W ++ Sbjct: 160 KNEL---FSNLP--TNGIVAKCNSSLTKNFLGASPSSPNWALA 197 >gi|123966756|ref|YP_001011837.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. MIT 9515] gi|123201122|gb|ABM72730.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. MIT 9515] Length = 249 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +++PKIDG I I Y GKF A R +G DV++ I+ I +P L I +VR Sbjct: 75 SIQPKIDGCAIAINYINGKFNKAITR----TGFDVTSKIKKIKDVPSRLP--IQRDFQVR 128 Query: 189 GEVY 192 GE+Y Sbjct: 129 GELY 132 >gi|123969095|ref|YP_001009953.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. AS9601] gi|123199205|gb|ABM70846.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. AS9601] Length = 249 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 +++PKIDG I IRY GKF A + G DVS+ I+ I +P + I ++ Sbjct: 74 LSIQPKIDGCAIAIRYIDGKFNKAITK----KGFDVSSKIKQIKNVPDCIP--IKRDFQI 127 Query: 188 RGEVYIS 194 RGE+Y + Sbjct: 128 RGELYAT 134 >gi|154301785|ref|XP_001551304.1| hypothetical protein BC1G_10044 [Botryotinia fuckeliana B05.10] gi|150855706|gb|EDN30898.1| hypothetical protein BC1G_10044 [Botryotinia fuckeliana B05.10] Length = 1054 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L I R + E V + G ++ S KT+ +++G + G SKL K L +K ++ Sbjct: 317 FVFTGMLDTISRDEGIELVKRYGGKITGAPSSKTNFVVLGKDAGPSKLRKIATLKIKTID 376 Query: 711 EEQFLFLLQ 719 E LL+ Sbjct: 377 EHGIFHLLR 385 >gi|406360|gb|AAD12433.1| homology to DNA ligase M36417 [Mycoplasma genitalium] Length = 98 Score = 43.5 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 11/106 (10%) Query: 528 LGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNI 587 L GD L D+I + + R + LGI+HVG +A++LA ++ NI Sbjct: 2 LKIGDKLFNKLVDNIENSKQKGMARLLTGLGIKHVGNVLAKNLANHF----------KNI 51 Query: 588 IAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL-LKEV 632 A + +LI + VG +A+++ ++ +P ++ +E L L++V Sbjct: 52 KALQHASLENLISLNDVGITVAESLYNWFHDPNHLQLIEQLELRQV 97 >gi|299541821|ref|ZP_07052144.1| DNA polymerase III [Lysinibacillus fusiformis ZC1] gi|298725559|gb|EFI66200.1| DNA polymerase III [Lysinibacillus fusiformis ZC1] Length = 110 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 8/86 (9%) Query: 641 KNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---GSK 697 +N++ NK++VFTG L + R +A + V G + +++ TD +++G+ +K Sbjct: 17 ENLTHPFYNKQIVFTGALSTMTRSEAAKQVKAYGGYLQGAVTQHTDFVVLGNKRRGISAK 76 Query: 698 LEKAQQL-----GVKIMNEEQFLFLL 718 KA+QL ++++ E+ FL+L+ Sbjct: 77 QHKAEQLIRQGQDIQMLIEDDFLWLI 102 >gi|170065938|ref|XP_001868075.1| replication factor C large subunit [Culex quinquefasciatus] gi|167862647|gb|EDS26030.1| replication factor C large subunit [Culex quinquefasciatus] Length = 1042 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709 + V TG ++ ++R + + + G V +S+K ++VG++ G SKL KA +LG+ + Sbjct: 277 QFVVTGVMESMERDECAQVIKDFGGKVVTSVSKKLTHMVVGEDAGPSKLAKADELGIPQI 336 Query: 710 NEEQFLFLLQQ 720 +E+Q L+++ Sbjct: 337 SEDQLFDLIRE 347 >gi|309784373|ref|ZP_07679012.1| NAD-dependent DNA ligase adenylation domain protein [Shigella dysenteriae 1617] gi|308927880|gb|EFP73348.1| NAD-dependent DNA ligase adenylation domain protein [Shigella dysenteriae 1617] Length = 153 Score = 43.1 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 ++PK+DG +T+ Y GK A RG+G GED + + I +P+ +S + ++G Sbjct: 66 VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANST-LQG 124 Query: 190 EVYISK 195 E+++ + Sbjct: 125 EIFLQR 130 >gi|123395219|ref|XP_001300705.1| differentiation specific element binding protein [Trichomonas vaginalis G3] gi|121881785|gb|EAX87775.1| differentiation specific element binding protein, putative [Trichomonas vaginalis G3] Length = 876 Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQL 704 +E V TGT+ I R ++ + + G ++ +S KTD++I G + SKL +A++ Sbjct: 52 LEGITFVATGTMPSITRETLKDIIEKYGGRLTTSISGKTDVVIRGCIEVGPSKLAQARER 111 Query: 705 GVKIMNEEQFLFLLQQYN 722 G+ I++EE LQ N Sbjct: 112 GLLIIDEESLFQYLQSTN 129 >gi|118397505|ref|XP_001031085.1| BRCT domain containing protein [Tetrahymena thermophila] gi|89285407|gb|EAR83422.1| BRCT domain containing protein [Tetrahymena thermophila SB210] Length = 1123 Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%) Query: 642 NVSSEI-ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD-------- 692 N+ S+I + +VFTG I R + VT +GA + +S KT +++ G Sbjct: 329 NIDSDILAGQTIVFTGDFDGISRDTMSKIVTDMGAKNTGSVSGKTTLLVHGSVLEDGRPP 388 Query: 693 NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G K + A+Q G KIMN+ QF L+ Sbjct: 389 EQGKKYQTAKQKGTKIMNQSQFSDYLK 415 >gi|299142830|ref|ZP_07035958.1| exonuclease [Prevotella oris C735] gi|298575698|gb|EFI47576.1| exonuclease [Prevotella oris C735] Length = 284 Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 14/91 (15%) Query: 646 EIENK-------KLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-S 696 E+ENK ++V TG L+ R E + GA ++ +S++TDI+IVG G S Sbjct: 191 EVENKETPFFMKRVVLTGNLEMFPARETIAEVLKAYGADINTSISKRTDIVIVGKGAGPS 250 Query: 697 KLEKAQQL-----GVKIMNEEQFLFLLQQYN 722 K++K ++L ++++ E + L +++++N Sbjct: 251 KMQKIEELQAQGHNLRVIEEPELLSIMKEFN 281 >gi|254526990|ref|ZP_05139042.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus marinus str. MIT 9202] gi|221538414|gb|EEE40867.1| NAD-dependent DNA ligase N-terminal domain protein [Prochlorococcus marinus str. MIT 9202] Length = 249 Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust. Identities = 73/310 (23%), Positives = 121/310 (39%), Gaps = 70/310 (22%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 LE+ I ++DD Y+ +I D ++D L++ N + N Sbjct: 5 LEERIEWYDD-NYRNGNALISDKQFDQLEK----------------------NLLRTNPN 41 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 FK + + SLEK E L+ + TR+ +EPKIDG + + Sbjct: 42 CDYFKKKNKLVLPSLEKDSIDEFLKGLLVDTRL--------------LIEPKIDGCAVAL 87 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 +Y G A R G DV+ + I IP L L +++VRGE+Y Sbjct: 88 QYRDGTLEKAISR----KGVDVTTKLIKIQDIPNNLPLR--GVLQVRGELY--------- 132 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 A + P + R ASG LR + L+F + ++ QYE + + Sbjct: 133 -----APNQSPNISQR-IASGFLRA--KEGFSERLSFCAFQILNST----LNQYESKKNL 180 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR- 320 LGF + + N + + + + Y DG+V K++ LQ + E++ Sbjct: 181 SKLGFTITQDI-SCNFTSQVDVFRKQWLEGKLFSKYPTDGIVVKINSRKLQ-LIREKSNL 238 Query: 321 -SPRWMISHK 329 P W ++ K Sbjct: 239 DYPYWQVAIK 248 >gi|198414852|ref|XP_002119468.1| PREDICTED: similar to ISRE-binding protein, partial [Ciona intestinalis] Length = 568 Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 4/88 (4%) Query: 633 SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD 692 S I + EKN +E V TG + R + + V + G V + +S +T +I G Sbjct: 272 SKEIPKGEKNC---MEGLSFVITGVQDSLSREEIKSLVERYGGKVVSAVSGRTSYLITGT 328 Query: 693 NPG-SKLEKAQQLGVKIMNEEQFLFLLQ 719 + G SKL KA+Q KI+ E++FL L++ Sbjct: 329 DAGESKLNKAKQHKTKIIEEDEFLDLIR 356 >gi|213027451|ref|ZP_03341898.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 79 Score = 43.1 bits (100), Expect = 0.19, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P ILD+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIP 94 P ++G + ++ H +P Sbjct: 58 PTQRVGAAPLTAFNQIRHEVP 78 >gi|170106533|ref|XP_001884478.1| predicted protein [Laccaria bicolor S238N-H82] gi|164640824|gb|EDR05088.1| predicted protein [Laccaria bicolor S238N-H82] Length = 950 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L R +A + + G V S KTD +++GDN G SK+ ++ + ++ Sbjct: 293 FVFTGELSSFSRDEAIDLAKRFGGRVVLQPSSKTDYVVLGDNAGPSKIAAIKKHKINTLS 352 Query: 711 EEQFLFLLQQYNTTLRIHD 729 E++FL L+ + ++ D Sbjct: 353 EDEFLGLIATRKGSGKLDD 371 >gi|322778907|gb|EFZ09323.1| hypothetical protein SINV_15414 [Solenopsis invicta] Length = 1027 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 + TG L ++R++A++ + + +S K + +IVGD G +KL KA LG+K ++ Sbjct: 320 FLITGVLDSLERNEAEDLIRKYSGRTVNTVSSKVNYVIVGDEAGPAKLTKANSLGIKQIS 379 Query: 711 EEQFLFLLQ 719 E+ L +++ Sbjct: 380 EDDLLEMIR 388 >gi|330969182|gb|EGH69248.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 68 Score = 42.7 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEK 700 V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL K Sbjct: 21 VLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTK 68 >gi|157311015|ref|YP_001469010.1| gp012 [Lactococcus phage KSY1] gi|108861355|gb|ABG21554.1| gp012 [Lactococcus phage KSY1] Length = 471 Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust. Identities = 77/317 (24%), Positives = 129/317 (40%), Gaps = 77/317 (24%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +PK DG + E GK + RG+G+ G+D+S ++ I V+ +P + + G Sbjct: 76 FQPKFDGVSGELIVEHGKITAISSRGNGNFGQDLSD-LKDILFNDVVI---MPTVRAIYG 131 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E ++ +ND P RN SG YLN VH + Sbjct: 132 E-FVWRND-------------NPSQKDRNLVSG------------YLNKKVHNKEPHLDF 165 Query: 250 FAKGQYEMLQKM-RCLGFP----VNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI--DGL 302 A Y+ + R + F G++ ++ I++ E+ + P DI DG Sbjct: 166 IA---YKAIDSNGRVMDFMQSQLYTTGIKWSDC--AILTDELEIPNFDGRYP-DIKRDGT 219 Query: 303 VYK--VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 + K VD F+L+ + + + K K ++T A+LEP Sbjct: 220 IIKNSVDIFALKPEPEAGITTITGVTWKKCKSKFSAT------------------AQLEP 261 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V IG +++ TL YIK +D + +GD+V++ R G+VIP ++ +V E Sbjct: 262 VTIGAVNVSSVTLP-LSYIKDMD-----------LMIGDKVMISRRGDVIP-CIEFLV-E 307 Query: 421 RHPDAQPFSFPSFCPIC 437 ++ P S C C Sbjct: 308 HTEESSPIINDSKCEYC 324 >gi|9964513|ref|NP_064981.1| putative NAD+ dependent DNA ligase [Amsacta moorei entomopoxvirus 'L'] gi|9944722|gb|AAG02905.1|AF250284_199 AMV199 [Amsacta moorei entomopoxvirus 'L'] Length = 532 Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 15/123 (12%) Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L Y IDG++ + + + + G +P W I K +K T + +I I + I P Sbjct: 256 LSYYIDGIIIRNNNLNPVIKSG----NPPWSICFKETDKIYITTVKEIKWDISKKNIYIP 311 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 A LEP+ I + I HN Y+ +D + I G V + + G VIP + Sbjct: 312 KAILEPIIIDNSTINAVACHNAKYV--ID---------KKINTGSIVEIVKKGGVIPIIN 360 Query: 415 DII 417 ++I Sbjct: 361 NVI 363 >gi|123968278|ref|YP_001009136.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. AS9601] gi|123198388|gb|ABM70029.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. AS9601] Length = 249 Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust. Identities = 72/310 (23%), Positives = 122/310 (39%), Gaps = 70/310 (22%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 LE+ I ++DD Y+ +I D ++D L++ N + N Sbjct: 5 LEERIEWYDD-NYRNGNALISDKQFDQLEK----------------------NLLRTNPN 41 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 FK + I SLEK E L+ + TR+ +EPKIDG + + Sbjct: 42 CDYFKKKNKIVLPSLEKDSIDEFLKGLLVDTRL--------------LIEPKIDGCAVAL 87 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 +Y G A R G DV++ + + IP L L +++VRGE+Y Sbjct: 88 QYRDGTLEKAISR----KGADVTSKLIKVQDIPNNLPLR--GVLQVRGELY--------- 132 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 A + P + + ASG LR + L+F + ++ QYE + + Sbjct: 133 -----APNQSPNISQK-IASGFLRA--KEGFSESLSFCAFQILNST----LNQYESKKSL 180 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR- 320 LGF + + N + + + + Y DG+V K++ LQ + E++ Sbjct: 181 SKLGFTIPQDI-SCNFTSQVEVFRKQWLEGKLFSKYPTDGIVVKINSRKLQ-LIREKSNL 238 Query: 321 -SPRWMISHK 329 P W ++ K Sbjct: 239 DYPYWQVAIK 248 >gi|312282245|dbj|BAJ33988.1| unnamed protein product [Thellungiella halophila] Length = 933 Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMN 710 V +GTL ++R +A++ + + G V+ +S+KT ++ ++ G K EKA++LG K + Sbjct: 185 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTTYLLCDEDIGGRKSEKAKELGTKFLT 244 Query: 711 EEQFLFLLQ 719 E+ +++ Sbjct: 245 EDGLFDMIR 253 >gi|221052935|ref|XP_002257842.1| replication factor C subunit 1 [Plasmodium knowlesi strain H] gi|193807674|emb|CAQ38378.1| replication factor C subunit 1, putative [Plasmodium knowlesi strain H] Length = 900 Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 15/94 (15%) Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEKA- 701 K V TG + R + Q + + G V + +S KT +I G+ N G K +KA Sbjct: 196 KFVLTGVFKNFSRDELQSKIKEHGGNVMSAVSSKTHYLIHGEYLEDGRMYNEGKKYQKAL 255 Query: 702 -----QQLGVKIMNEEQFLFLL-QQYNTTLRIHD 729 + +KI+NEE+FL +L ++ N T + D Sbjct: 256 EVQKMSKCNIKILNEEEFLQMLPEEKNKTSKWED 289 >gi|297812313|ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319877|gb|EFH50299.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] Length = 960 Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMN 710 V +GTL ++R +A++ + + G ++ +S+KT ++ ++ G K EKA++LG K + Sbjct: 216 FVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTTYLLCDEDIGGRKSEKAKELGTKFLT 275 Query: 711 EEQFLFLLQ 719 E+ +++ Sbjct: 276 EDGLFDMIR 284 >gi|205364119|gb|ACI04517.1| replication factor C large subunit [Hydra magnipapillata] Length = 1116 Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ R + + + + G V+ +S KT IIVG +PG +K+EKA + K ++ Sbjct: 365 FVITGVLEAFDRDEIADSIKRYGGKVTTSVSGKTSYIIVGRDPGETKIEKALKHKTKQID 424 Query: 711 EEQFLFLL 718 E+ F+ L+ Sbjct: 425 EDGFIDLI 432 >gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25] gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25] gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni S3] gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 326 Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 14/90 (15%) Query: 639 HEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP---- 694 E ++S + N+ V TG L + R +A + + LG + +++KT+I+I+GDN Sbjct: 232 QEFDISHPLYNQNCVITGILGRFTRSQAMQIIADLGGINQDSVTKKTNILILGDNDYRAM 291 Query: 695 -----GSKLEKAQQL-----GVKIMNEEQF 714 +KL++A++L +KI++E F Sbjct: 292 IKGGISNKLKRARELILKGQDLKIISENVF 321 >gi|22326948|ref|NP_680188.1| AtRFC1 (replication factor C 1); ATP binding / DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|13374860|emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis thaliana] gi|48958527|gb|AAT47816.1| At5g22010 [Arabidopsis thaliana] gi|332005585|gb|AED92968.1| replication factor C1 [Arabidopsis thaliana] Length = 956 Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMN 710 V +GTL ++R +A++ + + G ++ +S+KT ++ ++ G K EKA++LG K + Sbjct: 212 FVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTTYLLCDEDIGGRKSEKAKELGTKFLT 271 Query: 711 EEQFLFLLQ 719 E+ +++ Sbjct: 272 EDGLFDIIR 280 >gi|288923046|ref|ZP_06417199.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f] gi|288345596|gb|EFC79972.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f] Length = 296 Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 18/147 (12%) Query: 589 AHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSP----SIGRHEK--- 641 AH+ +D ++ L+ I+++A +F + P C VE V P + GR Sbjct: 137 AHDAEDDAEVLAA-LLPRILSRAAEQFLELPLTRCGVERDGVAVYPPRYSAAGRPPPCGY 195 Query: 642 -------NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP 694 + ++ ++VFTG + +R + G V+A +SR+T +++ + Sbjct: 196 RNPGPLAPGAPLVQGMRVVFTGP-TRTERGALVDRAAAAGLEVTASVSRRTSLLVTNEKH 254 Query: 695 GS--KLEKAQQLGVKIMNEEQFLFLLQ 719 G+ K A QLG+ +E +FL LL+ Sbjct: 255 GATRKARAAAQLGIPTRDEGEFLALLE 281 >gi|195452278|ref|XP_002073285.1| GK14054 [Drosophila willistoni] gi|194169370|gb|EDW84271.1| GK14054 [Drosophila willistoni] Length = 983 Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ ++R +A+ + + G V ++ +K ++VG++ G KL A++L + I++ Sbjct: 223 FVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVVGEDAGPKKLAVAEELNIPILS 282 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 283 EDGLFDLIRE 292 >gi|157413113|ref|YP_001483979.1| hypothetical protein P9215_07781 [Prochlorococcus marinus str. MIT 9215] gi|157387688|gb|ABV50393.1| Hypothetical protein P9215_07781 [Prochlorococcus marinus str. MIT 9215] Length = 249 Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust. Identities = 71/310 (22%), Positives = 122/310 (39%), Gaps = 70/310 (22%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 LE+ I ++DD Y+ +I D ++D L++ N + N Sbjct: 5 LEERIEWYDD-NYRNGNALISDKQFDQLEK----------------------NLLRTNPN 41 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFI--TRIYRFWQKKDDNSIFFTLEPKIDGTMITI 141 FK + + SLEK E L+ + TR+ +EPKIDG + + Sbjct: 42 CDYFKKKNKLVLPSLEKDSIDEFLKGLLVDTRL--------------LIEPKIDGCAVAL 87 Query: 142 RYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLAL 201 +Y G A R G D+++ + + IP L L +++VRGE+Y Sbjct: 88 QYRDGTLEKAISR----KGVDITSKLIKVQDIPNNLPLR--GVLQVRGELY--------- 132 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKM 261 A + P + R ASG LR + L+F + ++ QYE + + Sbjct: 133 -----APNQSPNISQR-IASGFLRA--KEGFSERLSFCAFQILNST----LNQYESKKNL 180 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR- 320 LGF + + N + + + + Y DG+V K++ LQ + E++ Sbjct: 181 SKLGFTIPQDI-SCNFTSQVEVFRKQWLEGKLFSKYPTDGIVVKINSRKLQ-LIREKSNL 238 Query: 321 -SPRWMISHK 329 P W ++ K Sbjct: 239 DYPYWQVAIK 248 >gi|289679597|ref|ZP_06500487.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae FF5] Length = 102 Score = 42.0 bits (97), Expect = 0.42, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83 L E+ H+ Y+ +P I D EYD L A+ P L P+ P ++G Sbjct: 11 LRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLV---TPDSPTQRVGSAAL 67 Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRI 114 + +V H +P LSL + D+ +F R+ Sbjct: 68 SAFTQVRHEMPMLSLGNAFEENDMLEFDRRV 98 >gi|333030386|ref|ZP_08458447.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] gi|332740983|gb|EGJ71465.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] Length = 279 Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 54/88 (61%), Gaps = 7/88 (7%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKL 698 + N + N+K+V TGT Q+ R + E + QLGA ++ +S +T+ ++ G+ G +KL Sbjct: 191 QANPQNPFYNQKVVITGTFQR-DRMELAEQIQQLGAKINTSISSRTNFVLKGEKAGPAKL 249 Query: 699 EK-----AQQLGVKIMNEEQFLFLLQQY 721 ++ +Q + ++++ EE+ + +L+++ Sbjct: 250 KRIHELQSQGVPIQVVEEEKLMKVLEKW 277 >gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] Length = 328 Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692 P+ GR+E ++ ++ F+G + R ++ + G V+ +SR T +++ D Sbjct: 233 PNPGRYEPG-GQLVQGMRVAFSGD-TSVDRELLEDRAIEAGLHVATSVSRLTSVLVTNDP 290 Query: 693 -NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +P SK KA+ G +++E F+ LLQ Sbjct: 291 DSPTSKTAKARSFGTPVIDEAAFMQLLQ 318 >gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum DSM 5476] gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum DSM 5476] Length = 319 Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 28/45 (62%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 NK VFTG L+K+ R +A + V G L++KT+ +I+G+N Sbjct: 230 NKVCVFTGALEKMTRSEAMQAVVNFGGTCKDNLTKKTNFLILGNN 274 >gi|1772609|emb|CAA71357.1| lysostaphin-like protein [Thermotoga maritima] Length = 311 Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 25/139 (17%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPI----------ILDSEYDALKRRCDAIAHAFP 63 I A E+ +E+SY + KP+ I DS YD ++ R + FP Sbjct: 151 IPHAHFEIRDRNEEVSYDPSTFLNLPKPVDEDIVLEKIKIGDSVYDFVEGRTYPFSGNFP 210 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHS-IPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 DLA G N +G L K++ IP +W + D RK ++ YRF Sbjct: 211 DLAIKAYSKGFNNTLG------LKKISFDQIPWSEFTNVWGVYD-RKSVSAAYRF----- 258 Query: 123 DNSIFFTLEPKIDGTMITI 141 +++ L P+ +MI + Sbjct: 259 --ELWYKLFPETFSSMIKV 275 >gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC 824] gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing BRCT domain [Clostridium acetobutylicum ATCC 824] Length = 306 Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 14/86 (16%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNP 694 + E +N+ +VFTG L + R +A V +LG + +++KT I++ + Sbjct: 218 ADEFKNEVVVFTGRLDSMSRDEAMGLVRRLGGTAGSSVTKKTTILVTNMKNIKNLRREEM 277 Query: 695 GSKLEKAQQL-----GVKIMNEEQFL 715 +KL++A L +K +NEE+FL Sbjct: 278 SNKLKRASDLNARGQNIKFLNEEEFL 303 >gi|221101530|ref|XP_002169845.1| PREDICTED: similar to replication factor C large subunit, partial [Hydra magnipapillata] Length = 932 Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ R + + + + G V+ +S KT IIVG +PG +K+EKA + K ++ Sbjct: 366 FVITGVLEAFDRDEIADSIKRYGGKVTTSVSGKTSYIIVGRDPGETKIEKALKHKTKQID 425 Query: 711 EEQFLFLL 718 E+ F+ L+ Sbjct: 426 EDGFIDLI 433 >gi|156093631|ref|XP_001612854.1| replication factor C subunit 1 [Plasmodium vivax SaI-1] gi|148801728|gb|EDL43127.1| replication factor C subunit 1, putative [Plasmodium vivax] Length = 945 Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 14/86 (16%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEK 700 N K V TG + R + Q + + G V + +S KT +I G+ N G K +K Sbjct: 235 NLKFVLTGVFKNFSRDELQSKIKEHGGSVMSAVSSKTHYLIHGEYLEDGRMYNEGKKYQK 294 Query: 701 AQQLG------VKIMNEEQFLFLLQQ 720 A +L +KI+NEEQ L ++ Q Sbjct: 295 AFELQKMSKSIIKILNEEQLLQMMPQ 320 >gi|123966480|ref|YP_001011561.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. MIT 9515] gi|123200846|gb|ABM72454.1| NAD-dependent DNA ligase N-terminus [Prochlorococcus marinus str. MIT 9515] Length = 251 Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 33/205 (16%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +EPKIDG I I+Y G+ + A R G+DV+ I+ I +P + + +I+VRG Sbjct: 76 IEPKIDGCAIGIQYIDGQLIKAISR----KGDDVTNKIKEILDVPN--EIKVKGLIQVRG 129 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+ F L +E +P + R A + + D + F + G+ +E Sbjct: 130 EL------FAPLENE------RPTYSQRKAGGYLRNEASKNDHLSFCGFQIIN-GRLNE- 175 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 ++ L ++ LGF + + + Y + + Y DG+V K++ Sbjct: 176 -----HDSLVYLKKLGFTIPE-YKSLKYLTQVEMYRKQWAEKKLFTQYPTDGIVVKLNSR 229 Query: 310 SLQ----KQLGERARSPRWMISHKF 330 LQ K +G P W ++ F Sbjct: 230 KLQLIREKSVG---CYPYWQMAINF 251 >gi|330948476|gb|EGH48736.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. pisi str. 1704B] Length = 60 Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +E LGA VS +S KT ++ G GSKL KA +LG+ +++E+ L Sbjct: 1 KEKRESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALL 49 >gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA 2018] Length = 317 Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 14/86 (16%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNP 694 + E +N+ +VFTG L + R +A V +LG + +++KT I++ + Sbjct: 229 ADEFKNEVVVFTGRLDSMSRDEAMGLVRRLGGTAGSSVTKKTTILVTNMKNIKNLRREEM 288 Query: 695 GSKLEKAQQL-----GVKIMNEEQFL 715 +KL++A L +K +NEE+FL Sbjct: 289 SNKLKRASDLNARGQNIKFLNEEEFL 314 >gi|82541068|ref|XP_724804.1| replication factor C, 140 kDa subunit [Plasmodium yoelii yoelii str. 17XNL] gi|23479576|gb|EAA16369.1| replication factor C, 140 kDa subunit [Plasmodium yoelii yoelii] Length = 888 Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 21/109 (19%) Query: 636 IGRHEKNVSSEIE-----NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV 690 + ++E NVS + NKK V TG + R Q + + G V + +S +T ++ Sbjct: 167 LQKNETNVSQNFDYLPFINKKFVLTGVFKTYSRDDLQNKIKEHGGSVMSAVSSRTHYLVH 226 Query: 691 GD--------NPGSKLEKAQQLG------VKIMNEEQFL--FLLQQYNT 723 G+ + G K +KA +L +KI+NEE+ L F QQ NT Sbjct: 227 GEYLEDGRLYSEGKKYQKAYELSKQSKSIIKILNEEELLQMFPNQQSNT 275 >gi|195343531|ref|XP_002038351.1| GM10782 [Drosophila sechellia] gi|194133372|gb|EDW54888.1| GM10782 [Drosophila sechellia] Length = 980 Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust. Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ ++R +A+ + + G V ++ +K ++VG+ G KL A +L + I++ Sbjct: 242 FVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAMADELNIPILS 301 Query: 711 EEQFLFLLQQYNTTLRI 727 E+ L+++ + ++ Sbjct: 302 EDGLFDLIREKSGNAKL 318 >gi|317503610|ref|ZP_07961630.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae DSM 15606] gi|315665271|gb|EFV04918.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae DSM 15606] Length = 284 Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 14/91 (15%) Query: 646 EIENK-------KLVFTGTLQKI-QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-S 696 E+ENK ++V TG L+ R + + GA ++ +S++TDI+IVG G S Sbjct: 191 EVENKETPFFMKRVVLTGNLETFPARETIAKMLKAYGADINTSISKRTDIVIVGKGAGPS 250 Query: 697 KLEKAQQL-----GVKIMNEEQFLFLLQQYN 722 K++K ++L ++++ E + L +++++N Sbjct: 251 KMQKIEELQAQGHNLRVIEEPELLSIMKEFN 281 >gi|17737765|ref|NP_524229.1| germ line transcription factor 1, isoform A [Drosophila melanogaster] gi|12644230|sp|P35600|RFC1_DROME RecName: Full=Replication factor C subunit 1; AltName: Full=Activator 1 140 kDa subunit; AltName: Full=Activator 1 subunit 1; AltName: Full=Germline transcription factor 1; AltName: Full=Replication factor C large subunit gi|2121267|gb|AAB58311.1| replication factor C large subunit [Drosophila melanogaster] gi|7296805|gb|AAF52082.1| germ line transcription factor 1, isoform A [Drosophila melanogaster] gi|28317228|gb|AAO39621.1| GH06471p [Drosophila melanogaster] Length = 986 Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ ++R +A+ + + G V ++ +K ++VG+ G KL A++L + I++ Sbjct: 242 FVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILS 301 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 302 EDGLFDLIRE 311 >gi|304728|gb|AAA28573.1| transcription factor [Drosophila melanogaster] Length = 986 Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ ++R +A+ + + G V ++ +K ++VG+ G KL A++L + I++ Sbjct: 242 FVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILS 301 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 302 EDGLFDLIRE 311 >gi|62472391|ref|NP_001014605.1| germ line transcription factor 1, isoform B [Drosophila melanogaster] gi|21483228|gb|AAM52589.1| AT18625p [Drosophila melanogaster] gi|61679311|gb|AAX52937.1| germ line transcription factor 1, isoform B [Drosophila melanogaster] Length = 1008 Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ ++R +A+ + + G V ++ +K ++VG+ G KL A++L + I++ Sbjct: 242 FVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILS 301 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 302 EDGLFDLIRE 311 >gi|227487575|ref|ZP_03917891.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51867] gi|227092557|gb|EEI27869.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51867] Length = 310 Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 15/87 (17%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIV----------GDN 693 S + + +VFTGTL++ +R Q+ V+ +G + L++KT +++V G + Sbjct: 219 SPALVGEHVVFTGTLKRGKRTDVQQLVSAIGGIADKSLTKKTTLLVVGILDPRRWVEGCS 278 Query: 694 PGSKLEKAQQL-----GVKIMNEEQFL 715 SKL KA +L +++++EE+F Sbjct: 279 GSSKLLKATKLRESGSPIEVISEEEFF 305 >gi|302865843|ref|YP_003834480.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302568702|gb|ADL44904.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] Length = 281 Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 35/170 (20%) Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV--YKVD--EFSLQKQLGERAR 320 G + + N+ +S Y +++ S P + L+ Y VD + + QL + AR Sbjct: 23 GLTLEAAADEINSTRSTLSRYENAQTLVS--PATVRALLTSYGVDPADIAAAVQLAKDAR 80 Query: 321 SPRWMISHKFAEKQASTRLLD-IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 P W +S+ + Q R +D I ++ TGI A EP + G L DYI Sbjct: 81 KPGWWVSYSYLLDQ---RTIDFIALEAEATGI----ANFEPSVVPG------LLQTADYI 127 Query: 380 KGLDASGKVMRGG----RDIRVGDRVLVK-----RAGEVIPKVVDIIVNE 420 +G VMRGG D +V RV ++ R P ++D I++E Sbjct: 128 RG------VMRGGPHTLTDEQVEQRVQLRLDRQQRLSGAEPPILDAIIDE 171 >gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B] gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B] Length = 298 Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 14/85 (16%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------PGSKLE 699 N+ +VFTG L+K+ R A + V LG ++ +++ T+ +I+G+N SK + Sbjct: 213 NRHVVFTGKLEKMIRQDAMQIVVNLGGILDNSVTKSTNYLILGNNDYNAILKGEKSSKHK 272 Query: 700 KAQQL-----GVKIMNEEQFLFLLQ 719 KA++L ++I++E F L++ Sbjct: 273 KAEKLKLEGQDIEIIDEFTFYDLIE 297 >gi|198453986|ref|XP_001359419.2| GA10826 [Drosophila pseudoobscura pseudoobscura] gi|198132600|gb|EAL28565.2| GA10826 [Drosophila pseudoobscura pseudoobscura] Length = 988 Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ ++R +A+ + + G V ++ +K ++VG+ G KL A++L V I++ Sbjct: 252 FVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLMYLVVGEEAGPKKLATAEELNVTILS 311 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 312 EDGLFDLIRE 321 >gi|330884612|gb|EGH18761.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea str. race 4] Length = 52 Score = 41.2 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 29/46 (63%) Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 V TG+L+++ R A+E + LGA VS +S KT ++ G GSKL Sbjct: 4 VLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKL 49 >gi|195152678|ref|XP_002017263.1| GL21622 [Drosophila persimilis] gi|194112320|gb|EDW34363.1| GL21622 [Drosophila persimilis] Length = 979 Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ ++R +A+ + + G V ++ +K ++VG+ G KL A++L V I++ Sbjct: 252 FVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLMYLVVGEEAGPKKLATAEELNVTILS 311 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 312 EDGLFDLIRE 321 >gi|301299722|ref|ZP_07205973.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852696|gb|EFK80329.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 89 Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 14/86 (16%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKL 698 +NK +VFTG+LQ + R A E + G +V +SR+TD +++ + K Sbjct: 4 KNKCVVFTGSLQSMLRKDAIEKINAAGGIVKNYVSRETDYLVIAPRQLDMFEEERKSKKQ 63 Query: 699 EKAQQLG-----VKIMNEEQFLFLLQ 719 A+++ +KI++EE+FL +L+ Sbjct: 64 IAAEKINMNGGEIKIISEEKFLSMLK 89 >gi|222616174|gb|EEE52306.1| hypothetical protein OsJ_34316 [Oryza sativa Japonica Group] Length = 929 Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710 V +GTL ++R +A + + + G V+ +S+KT+ ++ ++ G K KA++LGV + Sbjct: 258 FVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLADEDVGGVKSNKAKELGVPFLT 317 Query: 711 EEQFLFLLQQ 720 E+ ++++ Sbjct: 318 EDGLFDMIRK 327 >gi|194898632|ref|XP_001978873.1| GG12593 [Drosophila erecta] gi|190650576|gb|EDV47831.1| GG12593 [Drosophila erecta] Length = 981 Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ ++R +A+ + + G V ++ +K ++VG+ G KL A++L + I++ Sbjct: 241 FVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILS 300 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 301 EDGLFDLIRE 310 >gi|258565361|ref|XP_002583425.1| hypothetical protein UREG_06392 [Uncinocarpus reesii 1704] gi|237907126|gb|EEP81527.1| hypothetical protein UREG_06392 [Uncinocarpus reesii 1704] Length = 729 Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G V+ S KT +++G + G KLE ++ G+K ++ Sbjct: 31 FVFTGVLDALGREEGQALVKRYGGKVTTAPSSKTSYVVLGGDAGPKKLETIRKHGLKTID 90 Query: 711 EEQFLFLLQQ 720 E L+++ Sbjct: 91 EHGLFELIRK 100 >gi|218185964|gb|EEC68391.1| hypothetical protein OsI_36544 [Oryza sativa Indica Group] Length = 1014 Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710 V +GTL ++R +A + + + G V+ +S+KT+ ++ ++ G K KA++LGV + Sbjct: 260 FVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLADEDVGGVKSNKAKELGVPFLT 319 Query: 711 EEQFLFLLQQ 720 E+ ++++ Sbjct: 320 EDGLFDMIRK 329 >gi|115485959|ref|NP_001068123.1| Os11g0572100 [Oryza sativa Japonica Group] gi|108864532|gb|ABA94349.2| BRCA1 C Terminus domain containing protein, expressed [Oryza sativa Japonica Group] gi|113645345|dbj|BAF28486.1| Os11g0572100 [Oryza sativa Japonica Group] gi|215697840|dbj|BAG92033.1| unnamed protein product [Oryza sativa Japonica Group] Length = 1021 Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710 V +GTL ++R +A + + + G V+ +S+KT+ ++ ++ G K KA++LGV + Sbjct: 267 FVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLADEDVGGVKSNKAKELGVPFLT 326 Query: 711 EEQFLFLLQQ 720 E+ ++++ Sbjct: 327 EDGLFDMIRK 336 >gi|313247250|emb|CBY15541.1| unnamed protein product [Oikopleura dioica] Length = 432 Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG + + R + + + + G + +S KT +IVG+ PG SK++KA++ VK+++ Sbjct: 200 FVATGNGESLGRDEMKSLIQRYGGKFTTSVSGKTSYVIVGEEPGESKIKKAKEKAVKLVD 259 Query: 711 EEQFLFLLQ 719 E+ L L++ Sbjct: 260 EDFILELIR 268 >gi|30314655|dbj|BAC76085.1| replication factor C 110 kDa subunit [Oryza sativa Japonica Group] Length = 1021 Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710 V +GTL ++R +A + + + G V+ +S+KT+ ++ ++ G K KA++LGV + Sbjct: 267 FVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLADEDVGGVKSNKAKELGVPFLT 326 Query: 711 EEQFLFLLQQ 720 E+ ++++ Sbjct: 327 EDGLFDMIRK 336 >gi|195568307|ref|XP_002102159.1| GD19753 [Drosophila simulans] gi|194198086|gb|EDX11662.1| GD19753 [Drosophila simulans] Length = 980 Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ ++R +A+ + + G V ++ +K ++VG+ G KL A +L + I++ Sbjct: 242 FVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAMADELNIPILS 301 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 302 EDGLFDLIRE 311 >gi|302657732|ref|XP_003020581.1| hypothetical protein TRV_05323 [Trichophyton verrucosum HKI 0517] gi|291184429|gb|EFE39963.1| hypothetical protein TRV_05323 [Trichophyton verrucosum HKI 0517] Length = 1069 Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G + S KT +++G++ G KLE Q+ +K +N Sbjct: 331 FVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAGPKKLETIQKYKLKTIN 390 Query: 711 EEQFLFLLQQ 720 E L+++ Sbjct: 391 EGGLFELIRK 400 >gi|302509032|ref|XP_003016476.1| hypothetical protein ARB_04765 [Arthroderma benhamiae CBS 112371] gi|291180046|gb|EFE35831.1| hypothetical protein ARB_04765 [Arthroderma benhamiae CBS 112371] Length = 1073 Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G + S KT +++G++ G KLE Q+ +K +N Sbjct: 332 FVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAGPKKLETIQKYKLKTIN 391 Query: 711 EEQFLFLLQQ 720 E L+++ Sbjct: 392 EGGLFELIRK 401 >gi|294932355|ref|XP_002780231.1| replication factor C subunit, putative [Perkinsus marinus ATCC 50983] gi|239890153|gb|EER12026.1| replication factor C subunit, putative [Perkinsus marinus ATCC 50983] Length = 829 Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 14/86 (16%) Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEK 700 K LVFTG L++++R A GA V+ +S +T ++VG GSK +K Sbjct: 165 GKTLVFTGNLERLERDLAVTKAKLAGAKVTTAVSGRTTYLVVGSVLEDGRPIEEGSKFKK 224 Query: 701 AQQL------GVKIMNEEQFLFLLQQ 720 Q+L G ++ E +F+ LQ+ Sbjct: 225 TQELRAAGKPGPSLLQESEFIEKLQK 250 >gi|296812349|ref|XP_002846512.1| replication factor C subunit 1 [Arthroderma otae CBS 113480] gi|238841768|gb|EEQ31430.1| replication factor C subunit 1 [Arthroderma otae CBS 113480] Length = 1056 Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G S KT +++G++ G KLE ++ +K +N Sbjct: 321 FVFTGVLDSLGREQGQNLVKKYGGKSMTAPSSKTSYVVLGNDAGPKKLETIKKYKLKTIN 380 Query: 711 EEQFLFLLQQ 720 EE L+++ Sbjct: 381 EEGLFELIRK 390 >gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium siraeum 70/3] Length = 361 Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNP-------- 694 V E+ NK + TG + + QE ++++GA V + ++RKTDI+++G+ Sbjct: 274 VDIELSNKSICLTGDFDYGSKQEVQERLSEIGATVVSNVTRKTDILLIGEKGSDSWACGT 333 Query: 695 -GSKLEKAQQL 704 G+K +KA +L Sbjct: 334 YGTKAKKAIEL 344 >gi|195497183|ref|XP_002095995.1| GE25440 [Drosophila yakuba] gi|194182096|gb|EDW95707.1| GE25440 [Drosophila yakuba] Length = 986 Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 V TG L+ ++R +A+ + + G V ++ +K +++G+ G KL A++L + I++ Sbjct: 241 FVVTGVLESMEREEAESVIKEYGGRVMTVVGKKLKYLVIGEEAGPKKLAVAEELNIPILS 300 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 301 EDGLFDLIRE 310 >gi|238063265|ref|ZP_04607974.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149] gi|237885076|gb|EEP73904.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149] Length = 281 Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 35/170 (20%) Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV----YKVDEFSLQKQLGERAR 320 G + + N+ +S Y +++ S P + L+ VDE + QL + AR Sbjct: 23 GLTLEAAADEINSTRSTLSRYENAQTLIS--PATVRALLTLYGVSVDEIAAAVQLAKDAR 80 Query: 321 SPRWMISHKFAEKQASTRLLD-IDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYI 379 P W +S+ + + R +D I ++ TGI A EP + G L DYI Sbjct: 81 KPGWWVSYSYLLDR---RTIDFIALEAEATGI----ANFEPSVVPG------LLQTADYI 127 Query: 380 KGLDASGKVMRGG----RDIRVGDRVLVK-----RAGEVIPKVVDIIVNE 420 +G VMRGG D +V RV ++ R P ++D I++E Sbjct: 128 RG------VMRGGPHTLSDEQVEQRVHLRLDRQQRLTGDAPPILDAIIDE 171 >gi|296100338|ref|YP_003620507.1| hypothetical protein LKI_10796 [Leuconostoc kimchii IMSNU 11154] gi|295831655|gb|ADG39538.1| hypothetical protein LKI_10796 [Leuconostoc kimchii IMSNU 11154] Length = 93 Score = 40.8 bits (94), Expect = 0.91, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 12/90 (13%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS--------K 697 ++ + ++FTG L + R +AQ+ LGA +++K +I G S K Sbjct: 3 DLSQQPIIFTGKLNSLTRLQAQQLAAMLGAFPQTNMNQKIKYVIAGQIEQSMFEILTTKK 62 Query: 698 LEKAQQLGVKIMNEEQFL----FLLQQYNT 723 ++ A+ V+I+NE +FL + LQQ N+ Sbjct: 63 IKYAETHSVEILNESEFLKWCIWRLQQKNS 92 >gi|66395669|ref|YP_240034.1| ORF013 [Staphylococcus phage 47] gi|209363557|ref|YP_002267975.1| hypothetical protein phi2958PVL_gp05 [Staphylococcus phage phi2958PVL] gi|257428268|ref|ZP_05604666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|282905892|ref|ZP_06313747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282919259|ref|ZP_06326994.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus C427] gi|284024544|ref|ZP_06378942.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus 132] gi|62636093|gb|AAX91204.1| ORF013 [Staphylococcus phage 47] gi|208973058|dbj|BAG74374.1| hypothetical protein [Staphylococcus phage phi2958PVL] gi|257275109|gb|EEV06596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|282317069|gb|EFB47443.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus C427] gi|282331184|gb|EFB60698.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Btn1260] Length = 306 Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 15/89 (16%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD----------NPGSKLE 699 K + FTG L+ R++ + VT +G+V + + + T+ ++VG+ SK++ Sbjct: 213 KHVCFTGALKGFTRNEIAQTVTNIGSVYDSSVKKSTNYLVVGNLENLEKTHNYTKSSKIK 272 Query: 700 KAQQLG-----VKIMNEEQFLFLLQQYNT 723 KA++L ++I++E FL LL + + Sbjct: 273 KAEKLSSEGQDIEILSEMDFLKLLTTFTS 301 >gi|312128938|ref|YP_003996278.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella byssophila DSM 17132] gi|311905484|gb|ADQ15925.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella byssophila DSM 17132] Length = 303 Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 14/91 (15%) Query: 642 NVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------D 692 N S + +VFTG L + R +AQ+ + +G ++ ++++TD ++VG D Sbjct: 213 NTESIFYGRTVVFTGALSSMVRAEAQQTIADIGGILGNGVTKETDFLVVGQQDYRVVGED 272 Query: 693 NPGSKLEKAQQL-----GVKIMNEEQFLFLL 718 SK +KA L ++I++E+ FL L Sbjct: 273 GMSSKQKKAISLIEKGSSLEILSEDDFLKCL 303 >gi|326469755|gb|EGD93764.1| replication factor C protein [Trichophyton tonsurans CBS 112818] gi|326485097|gb|EGE09107.1| replication factor C subunit 1 [Trichophyton equinum CBS 127.97] Length = 1060 Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G + S KT +++G++ G KLE Q+ +K +N Sbjct: 323 FVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAGPKKLETIQKYKLKTIN 382 Query: 711 EEQFLFLLQQ 720 E L+++ Sbjct: 383 EGGLFELIRK 392 >gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62] gi|254040873|gb|ACT57669.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62] Length = 119 Score = 40.4 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +LS +A E+ L + +H YY+ P+ D YD + R DA+ FP+L Sbjct: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF-- 108 Query: 69 EDPNGPLNKIG 79 D + P N +G Sbjct: 109 -DEDHPWNTVG 118 >gi|227892034|ref|ZP_04009839.1| possible DNA polymerase III subunit epsilon [Lactobacillus salivarius ATCC 11741] gi|227866144|gb|EEJ73565.1| possible DNA polymerase III subunit epsilon [Lactobacillus salivarius ATCC 11741] Length = 95 Score = 40.4 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 14/86 (16%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKL 698 +NK +VFTG+LQ + R A E + G +V +S++TD +++ + K Sbjct: 10 KNKCVVFTGSLQSMLRKDAIEKINAAGGIVKNYVSKETDYLVIAPRQLDMFEEERKSKKQ 69 Query: 699 EKAQQLG-----VKIMNEEQFLFLLQ 719 A+++ +KI++EE+FL +L+ Sbjct: 70 IAAEKINMNGGEIKIISEEKFLSMLK 95 >gi|269977446|ref|ZP_06184418.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] gi|269934362|gb|EEZ90924.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] Length = 303 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 15/84 (17%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNPGS--------- 696 +E +++VFTGTL+ +R ++ V G L+++T +++VG NP + Sbjct: 215 LEGERVVFTGTLKHGRRADVEQLVLAAGGATDKNLTKQTTLLVVGIPNPSAWKEGTSASR 274 Query: 697 KLEKAQQL-----GVKIMNEEQFL 715 KL KA QL +++++EE+F Sbjct: 275 KLMKASQLRDSGSPIEVISEEEFF 298 >gi|306819092|ref|ZP_07452806.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35239] gi|304648068|gb|EFM45379.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35239] Length = 305 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 15/84 (17%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNPGS--------- 696 +E +++VFTGTL+ +R ++ V G L+++T +++VG NP + Sbjct: 217 LEGERVVFTGTLKHGRRADVEQLVLAAGGATDKNLTKQTTLLVVGIPNPSAWKEGTSASR 276 Query: 697 KLEKAQQL-----GVKIMNEEQFL 715 KL KA QL +++++EE+F Sbjct: 277 KLMKASQLRDSGSPIEVISEEEFF 300 >gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62] gi|254039808|gb|ACT56604.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62] gi|317120701|gb|ADV02524.1| DNA ligase [Liberibacter phage SC1] gi|317120744|gb|ADV02566.1| DNA ligase [Liberibacter phage SC2] gi|317120758|gb|ADV02579.1| DNA ligase [Liberibacter phage SC2] gi|317120805|gb|ADV02626.1| DNA ligase [Liberibacter phage SC1] gi|317120845|gb|ADV02666.1| DNA ligase [Candidatus Liberibacter asiaticus] Length = 119 Score = 40.4 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +LS +A E+ L + +H YY+ P+ D YD + R DA+ FP+L Sbjct: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELF-- 108 Query: 69 EDPNGPLNKIG 79 D + P N +G Sbjct: 109 -DEDHPWNTVG 118 >gi|168490120|ref|ZP_02714319.1| exonuclease family protein [Streptococcus pneumoniae SP195] gi|183571500|gb|EDT92028.1| exonuclease family protein [Streptococcus pneumoniae SP195] Length = 307 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 14/83 (16%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 FTG L+++ R +A + +G + +++ T+I++VG D SK++KAQ Sbjct: 225 FCFTGKLERMTRKEANKATALVGGIPEKGVTKHTNILVVGEQDWRVVGTDGLSSKMKKAQ 284 Query: 703 QL-----GVKIMNEEQFLFLLQQ 720 L ++IM E F+ LL++ Sbjct: 285 TLLEKGQDIEIMTENDFIRLLEE 307 >gi|168494862|ref|ZP_02719005.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|168494874|ref|ZP_02719017.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|168495024|ref|ZP_02719167.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575147|gb|EDT95675.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575215|gb|EDT95743.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575301|gb|EDT95829.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] Length = 307 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 14/83 (16%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 FTG L+++ R +A + +G + +++ T+I++VG D SK++KAQ Sbjct: 225 FCFTGKLERMTRKEANKATALVGGIPEKGVTKHTNILVVGEQDWRVVGTDGLSSKMKKAQ 284 Query: 703 QL-----GVKIMNEEQFLFLLQQ 720 L ++IM E F+ LL++ Sbjct: 285 TLLEKGQDIEIMTENDFIRLLEE 307 >gi|242068901|ref|XP_002449727.1| hypothetical protein SORBIDRAFT_05g022200 [Sorghum bicolor] gi|241935570|gb|EES08715.1| hypothetical protein SORBIDRAFT_05g022200 [Sorghum bicolor] Length = 946 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710 V +GTL ++R +A + + + G V+ +S+KT ++ ++ G K KA+ LGV + Sbjct: 256 FVISGTLDSLEREEATDLIKRYGGRVTGSISKKTSYLLADEDIGGVKSNKAKDLGVPFLT 315 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 316 EDGLFDLIRK 325 >gi|242049958|ref|XP_002462723.1| hypothetical protein SORBIDRAFT_02g030910 [Sorghum bicolor] gi|241926100|gb|EER99244.1| hypothetical protein SORBIDRAFT_02g030910 [Sorghum bicolor] Length = 1025 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGS-KLEKAQQLGVKIMN 710 V +GTL ++R +A + + + G V+ +S+KT ++ ++ G K KA+ LGV + Sbjct: 271 FVISGTLDSLEREEAADLIKRYGGRVTGSISKKTSYLLADEDLGGVKSNKAKDLGVPFLT 330 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 331 EDGLFDLIRK 340 >gi|148986116|ref|ZP_01819102.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP3-BS71] gi|149004079|ref|ZP_01828884.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69] gi|147757891|gb|EDK64900.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69] gi|147921830|gb|EDK72957.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP3-BS71] gi|301799167|emb|CBW31680.1| unnamed protein product [Streptococcus pneumoniae OXC141] Length = 307 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 14/83 (16%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 FTG L+++ R +A + +G + +++ T+I++VG D SK++KAQ Sbjct: 225 FCFTGKLERMTRKEANKAAALVGGIPEKGVTKHTNILVVGEQDWRVVGTDGLSSKMKKAQ 284 Query: 703 QL-----GVKIMNEEQFLFLLQQ 720 L ++IM E F+ LL++ Sbjct: 285 TLLEKGQDIEIMTENDFIRLLEE 307 >gi|328863808|gb|EGG12907.1| hypothetical protein MELLADRAFT_46497 [Melampsora larici-populina 98AG31] Length = 937 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSK-LEKAQQLGVKIMN 710 VFTG L + R +AQ + G V+ S KT +++G + G+K LE + + + Sbjct: 231 FVFTGELDSLSREEAQTLCKRYGGRVTTSPSSKTTYVVLGSDAGAKKLEVIAKHKITTLT 290 Query: 711 EEQFLFLL 718 E++FL L+ Sbjct: 291 EDEFLELI 298 >gi|307166495|gb|EFN60580.1| Replication factor C subunit 1 [Camponotus floridanus] Length = 935 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 + TG ++R +A+ + + +S K + IIVGD G +KL KA LG+K ++ Sbjct: 238 FLLTGVFDSLERDEAEHLIRKYSGRTVNTVSGKVNYIIVGDEAGPAKLAKANSLGIKQIS 297 Query: 711 EEQFLFLLQ 719 E+ L +++ Sbjct: 298 EDDLLEMIR 306 >gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 309 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 14/78 (17%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKLEKAQ 702 +VFTG L + R +A V +LG V + +++KT ++ D +KL KA Sbjct: 226 VVFTGGLASMTRDEAIRLVRKLGGSVGSSVTKKTTYLVTNTKDIDNLHRDEMSTKLRKAV 285 Query: 703 QL-----GVKIMNEEQFL 715 L G+K +NEE FL Sbjct: 286 DLKNKGQGIKCLNEEDFL 303 >gi|296083902|emb|CBI24290.3| unnamed protein product [Vitis vinifera] Length = 941 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMN 710 V +GTL ++R +A++ + + G V+ +S+KT+ ++ ++ G+K KA++LG + Sbjct: 188 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNFLLCDEDIGGNKSAKAKELGTAFLT 247 Query: 711 EEQFLFLLQQYN 722 E+ ++ N Sbjct: 248 EDGLFDMICASN 259 >gi|302853225|ref|XP_002958129.1| DNA replication factor C complex subunit 1 [Volvox carteri f. nagariensis] gi|300256597|gb|EFJ40860.1| DNA replication factor C complex subunit 1 [Volvox carteri f. nagariensis] Length = 963 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLG 705 + + V TG L + R +A++ + + G V+ +S KT ++VG N G K A+Q Sbjct: 219 LTGRTFVITGILDSLMRPEAEDLIKRHGGKVTKSVSGKTAFVVVGHNCGRGKYRDAKQHK 278 Query: 706 VKIMNEEQFLFLLQ 719 K+++E+ LL+ Sbjct: 279 TKLIDEDGLFALLK 292 >gi|325118994|emb|CBZ54546.1| putative replication factor c subunit [Neospora caninum Liverpool] Length = 1128 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 18/92 (19%) Query: 645 SEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGS 696 S K VFTG L + R +A V G ++ +S KTD ++ G GS Sbjct: 444 SSFAGKTFVFTGVLDSMGRDEAVAAVVGNGGRCTSAVSGKTDYLVAGSLLEDGRDVTTGS 503 Query: 697 KLEKAQQL----------GVKIMNEEQFLFLL 718 K KA QL +KI++E++FL +L Sbjct: 504 KYRKALQLMQDGSAKQKASLKILHEQEFLAML 535 >gi|194746572|ref|XP_001955754.1| GF18917 [Drosophila ananassae] gi|190628791|gb|EDV44315.1| GF18917 [Drosophila ananassae] Length = 982 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 + TG L+ ++R +A+ + + G V ++ +K ++VG+ G KL A++L + I++ Sbjct: 255 FLVTGVLESMEREEAESVIKEYGGRVMTVVGKKLQYLVVGEEAGPKKLAVAEELNIPILS 314 Query: 711 EEQFLFLLQQ 720 E+ L+++ Sbjct: 315 EDGLFDLIRE 324 >gi|6739583|gb|AAF27316.1| unknown [Lactococcus lactis] Length = 98 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 14/89 (15%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQL-GAVVSAILSRKTDII--------IVGDNPGSK 697 +EN+ VFTGTL + R +AQ ++ L G S++ + T ++ I G +P K Sbjct: 2 LENEYFVFTGTLTTMTRKQAQAIISGLEGHNQSSVTKKTTRLVTGYFPIDLIKGYSPSQK 61 Query: 698 LEKAQQL-----GVKIMNEEQFLFLLQQY 721 L +A+Q + IM+E++F+ L Q+ Sbjct: 62 LTEAEQAIESGQPLIIMSEKEFVDFLAQF 90 >gi|225435884|ref|XP_002265891.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 921 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMN 710 V +GTL ++R +A++ + + G V+ +S+KT+ ++ ++ G+K KA++LG + Sbjct: 176 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNFLLCDEDIGGNKSAKAKELGTAFLT 235 Query: 711 EEQFLFLLQQYN 722 E+ ++ N Sbjct: 236 EDGLFDMICASN 247 >gi|325109435|ref|YP_004270503.1| BRCT domain protein [Planctomyces brasiliensis DSM 5305] gi|324969703|gb|ADY60481.1| BRCT domain protein [Planctomyces brasiliensis DSM 5305] Length = 465 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 14/87 (16%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN---------PGSK 697 +E + + TGTL + +A E + + G V + +SR+T ++++G+ P K Sbjct: 66 LEGESVAITGTLASMTHDQAAEQIQRHGGVTTTHVSRQTTMLVIGEEGWPLESDGKPSQK 125 Query: 698 LEKAQQL-----GVKIMNEEQFLFLLQ 719 L+ AQ L ++I+ E +L +L+ Sbjct: 126 LQAAQALIDDGHSLRIVPETDWLRMLE 152 >gi|255079352|ref|XP_002503256.1| predicted protein [Micromonas sp. RCC299] gi|226518522|gb|ACO64514.1| predicted protein [Micromonas sp. RCC299] Length = 306 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 36/60 (60%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQ 703 +S I+NK +V GTL + R A+ +T G ++ KT++I++G + S LEKA++ Sbjct: 187 ASRIKNKCVVLVGTLHGMSRADAKTAITAAGGHWRDTITCKTELIVLGLSKPSALEKAEE 246 >gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 345 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692 P+ GR+E ++ ++ F+G +R ++ T+ G V+ LSR T +++ D Sbjct: 252 PNPGRYEPG-GRLVQGMRIAFSGD-TSTERDLLEDRATEAGLHVATSLSRLTSLLVTNDP 309 Query: 693 -NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + SK KA+Q G +++E F LLQ Sbjct: 310 DSGTSKTVKARQFGTPVVDEAAFGQLLQ 337 >gi|254431865|ref|ZP_05045568.1| DNA ligase [Cyanobium sp. PCC 7001] gi|197626318|gb|EDY38877.1| DNA ligase [Cyanobium sp. PCC 7001] Length = 41 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +S+KT ++ G+ GSKL KA+ LGV +++E L LL Sbjct: 1 MSKKTSYVVAGEEAGSKLTKAESLGVAVLDEAGLLALL 38 >gi|71652419|ref|XP_814867.1| proteasome regulatory non-ATPase subunit 11 [Trypanosoma cruzi strain CL Brener] gi|70879876|gb|EAN93016.1| proteasome regulatory non-ATPase subunit 11, putative [Trypanosoma cruzi] Length = 264 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 8/101 (7%) Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 SGEDV PR +S+ I I VRG+V I + F D ++ GR Y PR Sbjct: 124 SGEDVMTAGNYEQLTPRSVSVVIDPIQSVRGKVVI--DAFRTTKDALMG-GRNMYEEPRQ 180 Query: 219 AAS--GILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 S G L R +P +TR L+ + L T F K +E+ Sbjct: 181 TTSNLGWLTRPSPVALTRGLDRDYYSLAIT---FRKKNHEL 218 >gi|242809058|ref|XP_002485290.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC 10500] gi|218715915|gb|EED15337.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC 10500] Length = 1207 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 21/197 (10%) Query: 95 TLSLEKIWNI--EDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAA 152 T+S E +W I + R R F + +L+P++ G I +R KF Sbjct: 584 TISKEVLWRIYRDYPRNAAVRPTVFQVRISGAKGMLSLDPRLKGPTICLRDSMIKF---- 639 Query: 153 LRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKP 212 + ++ C I ++P L+ + +I+E G ++++ FL L E + R Sbjct: 640 ---RAEADHNIEICGSGIHSLPCYLNAPLIKILEDLG---VARDLFLELQREEVQNLRLA 693 Query: 213 YANPRNAASGILRRLNPTDITRYLNFFV-----HGLGKTSEIFAKGQYEM--LQKMRCLG 265 +PR AAS L + + T TR L++ + GL + F K E+ L K+R L Sbjct: 694 IRSPRQAAS-FLDQAHITKSTR-LSWLITVLQSMGLNYNQDKFLKRAVELVILMKLRDLK 751 Query: 266 FPVNNGVRQANTFHGIV 282 + V +A T +GI+ Sbjct: 752 YRARILVPEAVTLYGIM 768 >gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] Length = 282 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIM 709 + V +G Q R + Q+ + Q G ++ +S T+ ++ G G SKL KA+ G K++ Sbjct: 211 RFVISGNFQHFSRIEMQKIIVQNGGRITGSVSGLTNYLVCGSQAGNSKLSKAKLNGTKLI 270 Query: 710 NEEQFLFLL 718 +E Q L +L Sbjct: 271 SENQLLEIL 279 >gi|224372066|ref|YP_002606231.1| predicted type III DNA polymerase PolC [Desulfobacterium autotrophicum HRM2] gi|223694785|gb|ACN18067.1| predicted type III DNA polymerase PolC [Desulfobacterium autotrophicum HRM2] Length = 290 Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKL 698 E N E+ + +VFTG L I R A +G V+ +S+K D ++VGD S+L Sbjct: 192 EGNPEGELYGQSVVFTGALS-IPRKDAAAMAASIGCSVAPTVSKKIDYLVVGDQDASRL 249 >gi|15644408|ref|NP_229460.1| hypothetical protein TM1660 [Thermotoga maritima MSB8] gi|148270261|ref|YP_001244721.1| peptidase M23B [Thermotoga petrophila RKU-1] gi|170288958|ref|YP_001739196.1| peptidase M23 [Thermotoga sp. RQ2] gi|4982235|gb|AAD36727.1|AE001808_2 conserved hypothetical protein [Thermotoga maritima MSB8] gi|147735805|gb|ABQ47145.1| peptidase M23B [Thermotoga petrophila RKU-1] gi|170176461|gb|ACB09513.1| Peptidase M23 [Thermotoga sp. RQ2] Length = 323 Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 25/145 (17%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPI----------ILDSEYDALKRRCDAIAHAFP 63 I A E+ +E+SY + KP+ I DS YD ++ R + FP Sbjct: 151 IPHAHFEIRDRNEEVSYDPSTFLNLPKPVDEDIVLEKIKIGDSVYDFVEGRTYPFSGNFP 210 Query: 64 DLARSEDPNGPLNKIG-GEMNLSL-----FKVTH-SIPTLSLEKIWNIEDLRKFITRIYR 116 DLA G N +G +++L L ++++ IP +W + D RK ++ YR Sbjct: 211 DLAIKAYSKGFNNTLGLKKISLLLEGEEIYQISFDQIPWSEFTNVWGVYD-RKSVSAAYR 269 Query: 117 FWQKKDDNSIFFTLEPKIDGTMITI 141 F +++ L P+ +MI + Sbjct: 270 F-------ELWYKLFPETFSSMIKV 287 >gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 324 Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD- 692 P+ GR+E ++ ++ F+G +R ++ T+ G V+ LSR T +++ D Sbjct: 231 PNPGRYEPG-GRLVQGMRIAFSGD-TSTERDLLEDRATEAGLHVATSLSRLTSLLVTNDP 288 Query: 693 -NPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + SK KA+Q G +++E F LLQ Sbjct: 289 DSGTSKTVKARQFGTPVVDEAAFGQLLQ 316 >gi|239995022|ref|ZP_04715546.1| NAD-dependent DNA ligase [Alteromonas macleodii ATCC 27126] Length = 70 Score = 39.7 bits (91), Expect = 2.0, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 S+EQA++++ +L ++ ++ YY P + D+ YD + A+ +P L + PN Sbjct: 4 SLEQAKQQIETLRNTLNEYNYQYYVMDDPSVPDAVYDRDMQALIALEKQYPTL---QSPN 60 Query: 73 GPLNKIGG 80 P K+GG Sbjct: 61 SPSQKVGG 68 >gi|169865629|ref|XP_001839413.1| purine nucleotide binding protein [Coprinopsis cinerea okayama7#130] gi|116499532|gb|EAU82427.1| purine nucleotide binding protein [Coprinopsis cinerea okayama7#130] Length = 920 Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L R +A + + G V S KTD +++G++ G KLE ++ + ++ Sbjct: 240 FVFTGELTAFSRDEAVDLAKRFGGRVVGQPSSKTDYVVLGEDAGPKKLEAIKKHKLNTLD 299 Query: 711 EEQFLFLL 718 E+ FL L+ Sbjct: 300 EDGFLNLI 307 >gi|71409524|ref|XP_807104.1| proteasome regulatory non-ATPase subunit 11 [Trypanosoma cruzi strain CL Brener] gi|70871027|gb|EAN85253.1| proteasome regulatory non-ATPase subunit 11, putative [Trypanosoma cruzi] Length = 363 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 8/101 (7%) Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 SGEDV PR +S+ I I VRG+V I + F D ++ GR Y PR Sbjct: 177 SGEDVMTAGNYEQLTPRSVSVVIDPIQSVRGKVVI--DAFRTTKDALMG-GRNMYEEPRQ 233 Query: 219 AAS--GILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 S G L R +P +TR L+ + L T F K +E+ Sbjct: 234 TTSNLGWLTRPSPVALTRGLDRDYYSLAIT---FRKKNHEL 271 >gi|328464330|gb|EGF35747.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus MTCC 5462] Length = 47 Score = 39.3 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 18/32 (56%), Positives = 22/32 (68%) Query: 684 KTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 +TD++I GD GSKL KAQ L V IM+E L Sbjct: 11 ETDLVIAGDAAGSKLTKAQDLNVPIMDETALL 42 >gi|322821155|gb|EFZ27559.1| proteasome regulatory non-ATPase subunit 11, putative [Trypanosoma cruzi] Length = 310 Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 8/101 (7%) Query: 159 SGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRN 218 SGEDV PR +S+ I I VRG+V I + F D ++ GR Y PR Sbjct: 124 SGEDVMTAGNYEQLTPRSVSVVIDPIQSVRGKVVI--DAFRTTKDALMG-GRNMYEEPRQ 180 Query: 219 AAS--GILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEM 257 S G L R +P +TR L+ + L T F K +E+ Sbjct: 181 TTSNLGWLTRPSPVALTRGLDRDYYSLAIT---FRKKNHEL 218 >gi|327303742|ref|XP_003236563.1| chromosome transmission fidelity factor [Trichophyton rubrum CBS 118892] gi|326461905|gb|EGD87358.1| chromosome transmission fidelity factor [Trichophyton rubrum CBS 118892] Length = 1058 Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G + S KT +++G++ G KLE Q+ ++ +N Sbjct: 321 FVFTGVLDSLGREQGQNLVKKYGGKCMSAPSSKTSYVVLGNDAGPKKLETIQKYKLRTIN 380 Query: 711 EEQFLFLLQQ 720 E L+++ Sbjct: 381 EGGLFELIRK 390 >gi|158336878|ref|YP_001518053.1| hypothetical protein AM1_3746 [Acaryochloris marina MBIC11017] gi|158307119|gb|ABW28736.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 1187 Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 40/66 (60%) Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG L ++ + + + + G ++ S KT ++VG +PG+KL+KA++ + ++E+ Sbjct: 1116 VITGKLAQLSYEQVKTIIQEAGGTINTHPSSKTSYVVVGKDPGNKLKKAEKYSIPQLSEQ 1175 Query: 713 QFLFLL 718 Q + LL Sbjct: 1176 QLMELL 1181 >gi|281412567|ref|YP_003346646.1| Peptidase M23 [Thermotoga naphthophila RKU-10] gi|281373670|gb|ADA67232.1| Peptidase M23 [Thermotoga naphthophila RKU-10] Length = 323 Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 31/148 (20%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPI----------ILDSEYDALKRRCDAIAHAFP 63 I A E+ +E+SY + KP+ I DS YD ++ R + FP Sbjct: 151 IPHAHFEIRDRNEEVSYDPSTFLNLPKPVDEDIVLEKIKIGDSVYDFVEGRTYPFSGNFP 210 Query: 64 DLARSEDPNGPLNKIG---------GEMNLSLFKVTH-SIPTLSLEKIWNIEDLRKFITR 113 DLA G N +G GE +++++ IP +W + D RK ++ Sbjct: 211 DLAIKAYSKGFNNTLGLKRITLLLEGE---EIYQISFDQIPWSEFTNVWGVYD-RKSVSA 266 Query: 114 IYRFWQKKDDNSIFFTLEPKIDGTMITI 141 YRF +++ L P+ +MI + Sbjct: 267 AYRF-------ELWYRLFPETFSSMIKV 287 >gi|224054238|ref|XP_002298160.1| predicted protein [Populus trichocarpa] gi|222845418|gb|EEE82965.1| predicted protein [Populus trichocarpa] Length = 550 Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN-PGSKLEKAQQLGVKIMN 710 V +GTL ++R +A++ + + G V+ +S+KT ++ ++ G K KA++LG + Sbjct: 209 FVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTSYLLCDEDIEGRKSSKAKELGTPFLT 268 Query: 711 EEQ-FLFLLQQYNTTLRIHDD 730 E+ F +L N+ +D Sbjct: 269 EDGLFDKILSSKNSKAPARED 289 >gi|320035705|gb|EFW17646.1| chromosome transmission fidelity factor [Coccidioides posadasii str. Silveira] Length = 1045 Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G V+ S KT +++G + G KLE ++ +K +N Sbjct: 305 FVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDAGPKKLETIRKHNLKTIN 364 Query: 711 EEQFLFLLQQ 720 E L+++ Sbjct: 365 EYGLFELIRK 374 >gi|119190369|ref|XP_001245791.1| hypothetical protein CIMG_05232 [Coccidioides immitis RS] Length = 1068 Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G V+ S KT +++G + G KLE ++ +K +N Sbjct: 328 FVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDAGPKKLETIRKHNLKTIN 387 Query: 711 EEQFLFLLQQ 720 E L+++ Sbjct: 388 EYGLFELIRK 397 >gi|303315067|ref|XP_003067541.1| BRCA1 C Terminus domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240107211|gb|EER25396.1| BRCA1 C Terminus domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 1068 Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 VFTG L + R + Q V + G V+ S KT +++G + G KLE ++ +K +N Sbjct: 328 FVFTGVLDSLGRDEGQALVKRYGGKVTGAPSSKTSYVVLGSDAGPKKLETIRKHNLKTIN 387 Query: 711 EEQFLFLLQQ 720 E L+++ Sbjct: 388 EYGLFELIRK 397 >gi|295133972|ref|YP_003584648.1| NAD-dependent DNA ligase [Zunongwangia profunda SM-A87] gi|294981987|gb|ADF52452.1| NAD-dependent DNA ligase [Zunongwangia profunda SM-A87] Length = 148 Score = 38.9 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 5/91 (5%) Query: 640 EKNVSSEIEN----KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG 695 + SEIEN KK+VF G L + + A+V ++ T+ +I G NP Sbjct: 39 DTKADSEIENGFEGKKVVFDGELDAYIEENIKNELRNKHAIVEDKMAEDTNFLITGKNPD 98 Query: 696 -SKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 +E+A+ LGV I NE + + + T L Sbjct: 99 WLVVEEAKDLGVTIFNEMDWQNTVHKIETNL 129 >gi|306824811|ref|ZP_07458155.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433022|gb|EFM35994.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 93 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 7/81 (8%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD------NPGSKLE 699 ++ K +V TG+L+ + R ++ ++ GAVV + +S KTDI+++G +P K Sbjct: 2 DLTGKNIVITGSLRPLTREESIRFLESKGAVVQSYVSNKTDILVLGHKQLNLFDP-DKRS 60 Query: 700 KAQQLGVKIMNEEQFLFLLQQ 720 K ++ ++E QF+ L + Sbjct: 61 KKHDAALRRISEGQFITFLSE 81 >gi|237839249|ref|XP_002368922.1| replication factor C subunit, putative [Toxoplasma gondii ME49] gi|211966586|gb|EEB01782.1| replication factor C subunit, putative [Toxoplasma gondii ME49] Length = 1260 Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 18/89 (20%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEKA 701 K VFTG L + R +A V G ++ +S +TD ++ G GSK KA Sbjct: 470 KTFVFTGVLDSMAREEAVSAVVGNGGRCTSAVSGRTDYLVAGALLEDGRDVTTGSKYRKA 529 Query: 702 QQL----------GVKIMNEEQFLFLLQQ 720 QL +KI++E++FL +L + Sbjct: 530 LQLMHDGKGKQKTSLKILHEQEFLAMLPE 558 >gi|301111033|ref|XP_002904596.1| replication factor C subunit 1 [Phytophthora infestans T30-4] gi|262095913|gb|EEY53965.1| replication factor C subunit 1 [Phytophthora infestans T30-4] Length = 770 Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 15/116 (12%) Query: 629 LKEVSPSIGRHE---KNV----SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681 + EV P + E K V S ++ K F+G L+ + R A V G V+ + Sbjct: 64 MPEVKPEAKKEEGALKKVPAPCSGCLDGKTFAFSGVLESLSREDAVHLVKSCGGSVANSI 123 Query: 682 SRKTDIIIVGD--------NPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729 +R T +++G GSK ++A V+I+ + +F L+ + T + D Sbjct: 124 TRSTKYLVIGSTLEQGGNVTDGSKYKEAVAKNVRILTQNEFYNLITEAATAQQTQD 179 >gi|221507917|gb|EEE33504.1| replication factor C subunit, putative [Toxoplasma gondii VEG] Length = 1260 Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 18/89 (20%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEKA 701 K VFTG L + R +A V G ++ +S +TD ++ G GSK KA Sbjct: 470 KTFVFTGVLDSMAREEAVSAVVGNGGRCTSAVSGRTDYLVAGALLEDGRDVTTGSKYRKA 529 Query: 702 QQL----------GVKIMNEEQFLFLLQQ 720 QL +KI++E++FL +L + Sbjct: 530 LQLMHDGKGKQKTSLKILHEQEFLAMLPE 558 >gi|221483441|gb|EEE21760.1| replication factor C subunit, putative [Toxoplasma gondii GT1] Length = 1260 Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 18/89 (20%) Query: 650 KKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKLEKA 701 K VFTG L + R +A V G ++ +S +TD ++ G GSK KA Sbjct: 470 KTFVFTGVLDSMAREEAVSAVVGNGGRCTSAVSGRTDYLVAGALLEDGRDVTTGSKYRKA 529 Query: 702 QQL----------GVKIMNEEQFLFLLQQ 720 QL +KI++E++FL +L + Sbjct: 530 LQLMHDGKGKQKTSLKILHEQEFLAMLPE 558 >gi|239629265|ref|ZP_04672296.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239528470|gb|EEQ67471.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 94 Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 8/82 (9%) Query: 646 EIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQ 703 ++ K+++FTG L+ +R +AQ+ T LGA + +K DI++VG P +L Q+ Sbjct: 3 DLRGKRILFTGRLRSFRRFQAQQLATILGAKPVNGIDKKVDILVVGIISKPYDQLLTTQK 62 Query: 704 L------GVKIMNEEQFLFLLQ 719 L G+ ++E F+ Q Sbjct: 63 LTYARTYGIPKIDELAFISWCQ 84 >gi|320590089|gb|EFX02534.1| nucleoporin [Grosmannia clavigera kw1407] Length = 1320 Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 4/134 (2%) Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL-GKQQLDFFFKSED 499 + RD +P TG +V + TG L + LERL+ F+ +A +I+GL G L + E+ Sbjct: 677 ITRDFSP-TGVVVKSTVPTGELTIVQENLERLRTFLKVNAGSIQGLSGPADLRRTTRHEE 735 Query: 500 PAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF-SLG 558 A A + LQ+ ++ + I +L D V+++Y ++ L + SL Sbjct: 736 IALQAEHQA-LHALQKLMESISEGISFVLMLFDERVSDIYVRMDDSTRQELRSLTYESLF 794 Query: 559 IRHVGAEIARSLAK 572 + G ++A+ L K Sbjct: 795 SKPEGKQLAKLLVK 808 >gi|307197038|gb|EFN78410.1| Replication factor C subunit 1 [Harpegnathos saltator] Length = 1045 Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 + TG + ++R++ ++ + G + +S K + I+VGD G +KL KA L +K + Sbjct: 338 FLTTGVFESLERNEVEDLIKNYGGRIVNSVSSKVNYIMVGDEAGPAKLAKANTLSIKQIT 397 Query: 711 EEQFLFLLQ 719 E+ L +++ Sbjct: 398 EDDLLEMIR 406 >gi|189490483|ref|YP_001957053.1| putative DNA ligase [Pseudomonas phage 201phi2-1] gi|164609548|gb|ABY63157.1| putative DNA ligase [Pseudomonas phage 201phi2-1] Length = 308 Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust. Identities = 49/244 (20%), Positives = 93/244 (38%), Gaps = 34/244 (13%) Query: 91 HSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVY 150 H P L + + +R ++ ++ ++I + P +G + + Y+ G Sbjct: 80 HDFPVLDYKPATTLMHVRNWLAKV----DCDYTDNIDIIMTPYYNGCRVELVYQGGSLHK 135 Query: 151 AALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGR 210 A +G G G D + + IP+ + N E I +RG + + N +++ + Sbjct: 136 AITKGGGIMGTDFTMNAYLVEGIPQQILDN--ERISIRGVITSTLNHVWGEDEKRVI--- 190 Query: 211 KPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNN 270 S L PT+I LN+ V + G + +R + + Sbjct: 191 ----------SASLMSTEPTNIN--LNYLVF---VPDDWHVPGAMLNTKDLRSISLAWDM 235 Query: 271 GVRQANTFHGI---VSYYNEM-----KSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSP 322 ++F G + Y E K I+S +PY G+++ VD + +LG + P Sbjct: 236 EPAGMDSFPGQYKEIGYLEEKIETFRKEIKSKIPYS--GILFTVDSLGRKMELGYTSIHP 293 Query: 323 RWMI 326 W I Sbjct: 294 EWAI 297 >gi|303290318|ref|XP_003064446.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454044|gb|EEH51351.1| predicted protein [Micromonas pusilla CCMP1545] Length = 370 Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 10/87 (11%) Query: 646 EIENKKLVFTGTLQKIQ--------RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-S 696 ++ K +V TG ++ + KA+ Q G V+ +S +TD+++VG PG S Sbjct: 223 QLAGKTIVLTGVFPELGGGCGLNLGKDKARRLCEQFGGRVTTAVSGRTDLLLVGSEPGAS 282 Query: 697 KLEKAQQL-GVKIMNEEQFLFLLQQYN 722 K+ KA+ G +MN +Q L N Sbjct: 283 KVAKARSTPGCMLMNIDQLREQLTAGN 309 >gi|33322833|gb|AAQ07152.1|AF496462_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis] Length = 69 Score = 38.1 bits (87), Expect = 5.0, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 28/41 (68%) Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 LGA V+ +S+KTD ++ G++ GSKL KA+ L + + E + Sbjct: 4 LGAKVTGSVSKKTDCLVYGEDAGSKLAKAEALDIPRLTEAE 44 >gi|302887488|ref|XP_003042632.1| hypothetical protein NECHADRAFT_42353 [Nectria haematococca mpVI 77-13-4] gi|256723544|gb|EEU36919.1| hypothetical protein NECHADRAFT_42353 [Nectria haematococca mpVI 77-13-4] Length = 2515 Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 14/103 (13%) Query: 381 GLDASGKVMRGG---RDIRVGDRVLVKRAGEVIPKVVDIIVNERH----PDAQPFSFPSF 433 GL+A+G V R G +D+RVGDRV++ G II +E+ PD F + Sbjct: 1851 GLEATGVVTRLGPDVKDLRVGDRVILFSRGSF---STSIITSEKLCEVIPDELSFEEGAT 1907 Query: 434 CPICQSRVVRDL----NPKTGKLVAAHRCTGGLACSAQQLERL 472 P + + L K G+ V H GG+ +A Q+ R+ Sbjct: 1908 MPCVYATAIYSLIDIGGLKRGQSVLIHSACGGVGIAAIQVARM 1950 >gi|78779078|ref|YP_397190.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9312] gi|78712577|gb|ABB49754.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9312] Length = 249 Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 84/207 (40%), Gaps = 41/207 (19%) Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 +EPKIDG + ++Y G A R G DV+ + + IP L L +++VRG Sbjct: 76 IEPKIDGCAVALQYRDGILEKAISR----KGTDVTTKLIKVQDIPNHLPLR--GVLQVRG 129 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 E+Y A + P + R ASG LR L+F + ++ Sbjct: 130 ELY--------------ASNQTPNISQR-MASGYLR--AKEGFPERLSFCAFQILNST-- 170 Query: 250 FAKGQYEMLQKMRCLGFPV-----NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 QYE + + LGF + N Q F + E K R Y DG+V Sbjct: 171 --LNQYESKKSLSELGFTIPQDISCNFTSQVQVFR---KQWIEGKLFRE---YPTDGIVV 222 Query: 305 KVDEFSLQKQLGERAR--SPRWMISHK 329 K++ LQ + E++ P W ++ K Sbjct: 223 KINSRKLQ-LIREKSNLDYPYWQVAIK 248 >gi|301093002|ref|XP_002997350.1| replication factor C subunit, putative [Phytophthora infestans T30-4] gi|262110748|gb|EEY68800.1| replication factor C subunit, putative [Phytophthora infestans T30-4] Length = 893 Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 8/91 (8%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGD--------NPGSKL 698 ++ K F+G L+ + R A V G ++ ++R T +++G GSK Sbjct: 212 LDGKTFAFSGVLESLSREDAVHLVKSCGGSIAISITRSTKYLVIGSTLEQGGNVTDGSKY 271 Query: 699 EKAQQLGVKIMNEEQFLFLLQQYNTTLRIHD 729 ++A V+I+ + +F L+ + T + D Sbjct: 272 KEAVAKNVRILTQNEFYNLITEAATAQQTQD 302 >gi|319654072|ref|ZP_08008164.1| hypothetical protein HMPREF1013_04784 [Bacillus sp. 2_A_57_CT2] gi|317394265|gb|EFV75011.1| hypothetical protein HMPREF1013_04784 [Bacillus sp. 2_A_57_CT2] Length = 91 Score = 37.7 bits (86), Expect = 6.8, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 13/86 (15%) Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG-DNP-------GSKL 698 ++ + VF+G + + R +A + V G + +++ T ++VG +NP +KL Sbjct: 6 LKGEVFVFSGKMHTLLRKEAIKEVLIRGGICEENVTKNTTYLVVGIENPEAIKRNVSTKL 65 Query: 699 EKAQQ-----LGVKIMNEEQFLFLLQ 719 KA++ + +KI+NEE+FL LL+ Sbjct: 66 GKAEEYNAAGISIKIINEEEFLNLLR 91 >gi|255524855|ref|ZP_05391804.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|255511425|gb|EET87716.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] Length = 306 Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 14/82 (17%) Query: 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG---------DNPGSKL 698 +N+ +VFTG L + R +A V LG + ++RKT I++ + +KL Sbjct: 222 KNEVVVFTGRLDSMPRDEAMGLVRVLGGTTGSSVTRKTTILVTNMKDAKDLRREEMSTKL 281 Query: 699 EKAQQLGVK-----IMNEEQFL 715 ++A L +K +NE++FL Sbjct: 282 KRAVDLNIKGQNIRFLNEDEFL 303 >gi|163735140|ref|ZP_02142576.1| Exonuclease [Roseobacter litoralis Och 149] gi|161391598|gb|EDQ15931.1| Exonuclease [Roseobacter litoralis Och 149] Length = 287 Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 15/94 (15%) Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN------ 693 + N + + +VFTG L+ I R +A + +G V A +++KT +++VGD Sbjct: 191 DGNPDGALAGEVVVFTGALE-IPRREAADLAASIGCSVGASVTKKTTLLVVGDTDVARLA 249 Query: 694 ---PGSKLEKAQQLGVK-----IMNEEQFLFLLQ 719 SK KA+ L K I+ E F L++ Sbjct: 250 GHAKSSKHRKAEDLAAKGVPIRIIRETDFRELVE 283 >gi|153816808|ref|ZP_01969475.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126512611|gb|EAZ75205.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] Length = 166 Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 644 SSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQ 702 +SE ++ ++ FTG K+ + +E +V ++ DI+ G N G KLEKA Sbjct: 83 ASEQDSLQVCFTG-FNKLDKAALKELAANNNMIVRKEVTVYLDILCYGINAGPKKLEKAM 141 Query: 703 QLGVKIMNEEQF 714 + GV I+N EQF Sbjct: 142 EQGVMILNREQF 153 >gi|145483437|ref|XP_001427741.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124394824|emb|CAK60343.1| unnamed protein product [Paramecium tetraurelia] Length = 807 Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN--------PGSKLEKAQQ 703 +V +G L R K ++++ GA V+ +S KT+ +IVGD G+K ++A + Sbjct: 112 IVLSGILNVCSRDKFEQFLKNNGAKVTGSVSGKTNYLIVGDKLEDGRKGEEGNKFKEATK 171 Query: 704 LGVKIMNEEQF 714 G KI+ E + Sbjct: 172 KGTKIIRENEL 182 >gi|294656132|ref|XP_458382.2| DEHA2C15994p [Debaryomyces hansenii CBS767] gi|199430883|emb|CAG86464.2| DEHA2C15994p [Debaryomyces hansenii] Length = 915 Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPG-SKLEKAQQLGVKIMN 710 ++FTG L +++R A+ + GA V+ +S KT ++++G+ G SK++K ++ +K + Sbjct: 222 MIFTGILPRLERTVAENLAKKYGAKVTKSISGKTSLVVIGEEAGPSKVQKIKKNKIKAIT 281 Query: 711 EEQFLFLLQ 719 E+ F+ LLQ Sbjct: 282 EDGFIQLLQ 290 >gi|154416257|ref|XP_001581151.1| transcription factor [Trichomonas vaginalis G3] gi|121915376|gb|EAY20165.1| transcription factor, putative [Trichomonas vaginalis G3] Length = 687 Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust. Identities = 17/69 (24%), Positives = 41/69 (59%), Gaps = 2/69 (2%) Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVG--DNPGSKLEKAQQLGVKIM 709 V TGT+ ++R + ++ +T+ G V++ +S KTD ++VG + K++ ++ + + Sbjct: 55 FVPTGTMVSLKREQVKDLITKYGGKVTSSISGKTDCVVVGCIEVGPKKIQTCREKNIPTI 114 Query: 710 NEEQFLFLL 718 +E+ +L+ Sbjct: 115 DEDGLFYLI 123 Searching..................................................done Results from round 2 >gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] gi|254040849|gb|ACT57645.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 949 bits (2454), Expect = 0.0, Method: Composition-based stats. Identities = 731/731 (100%), Positives = 731/731 (100%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH Sbjct: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK Sbjct: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN Sbjct: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV Sbjct: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID Sbjct: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP Sbjct: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE Sbjct: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA Sbjct: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD Sbjct: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR Sbjct: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK Sbjct: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ Sbjct: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 Query: 721 YNTTLRIHDDD 731 YNTTLRIHDDD Sbjct: 721 YNTTLRIHDDD 731 >gi|86358438|ref|YP_470330.1| NAD-dependent DNA ligase LigA [Rhizobium etli CFN 42] gi|123738303|sp|Q2K6D3|DNLJ_RHIEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86282540|gb|ABC91603.1| DNA ligase (NAD+) protein [Rhizobium etli CFN 42] Length = 718 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 339/712 (47%), Positives = 492/712 (69%), Gaps = 5/712 (0%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ FP+L R Sbjct: 8 VETLTIEEAAAELERLAREIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P ++G +++ V H+ P LSL+ ++ ED++ F+ +YRF + D SI F Sbjct: 68 ---DSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRMPDQSIAF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG ++IRYE G+ AA RGDG +GE+V+A IR I IP L +P ++E+R Sbjct: 125 TAEPKIDGLSMSIRYENGRLTTAATRGDGTTGENVTANIRTIAEIPNQLPKGVPAVVEIR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G+ S Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 ++ A Q+ M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD Sbjct: 245 DMPADTQFAMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLKRPDLDYDIDGVVYKVD 304 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ++LG R+RSPRW +HKF +QA T + I+IQ+GRTG LTPVARL+P+ +GG + Sbjct: 305 SLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364 Query: 368 ITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TNATLHNEDYIKG+ SG+ +R DIR GD V+V+RAG+VIP+++D+++ +R + + Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRLAEVK 424 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP+C S VR++N KTGK+ + RCTGG C AQ E LKHFVSR+AF+IEGL Sbjct: 425 PYEFPKICPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+DFFF++EDP+ IR +IFTL++RQQ S TK+ENI GFG VSV LY +IN+RR Sbjct: 485 GSKQIDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYAAINERR 544 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I+L RFI++LGIRHVG A+ LA+ Y +Y+ FA + + D W L + +G+ Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNAIEGIGE 604 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+A+VEFY+ PRN+ + LL EV+P+ S + K +VFTG+L+K R +A Sbjct: 605 VVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFTRDEA 664 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716 >gi|222149123|ref|YP_002550080.1| NAD-dependent DNA ligase LigA [Agrobacterium vitis S4] gi|254781248|sp|B9JY41|DNLJ_AGRVS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221736108|gb|ACM37071.1| DNA ligase [Agrobacterium vitis S4] Length = 719 Score = 870 bits (2249), Expect = 0.0, Method: Composition-based stats. Identities = 344/716 (48%), Positives = 478/716 (66%), Gaps = 6/716 (0%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 LIP+E LS EQA +EL L I++HD Y+ +P I D++YDALKRR DAI FP L Sbjct: 5 LIPVEDLSEEQAGQELIRLAAAIAHHDALYHGKDQPEISDADYDALKRRNDAIEARFPTL 64 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 RS + P ++G ++TH+ P LSL+ ++ ED+ F+ +YRF DNS Sbjct: 65 VRS---DSPSQRVGAAPAGIFSQITHARPMLSLDNTFSDEDVADFVASVYRFLGVMPDNS 121 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE K AA RGDG +GE+V+A I I IP L + P+++ Sbjct: 122 IAFTAEPKIDGLSMSIRYEHRKLKTAATRGDGTTGENVTANILTIKEIPTELPADAPDVV 181 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFLALN +M A GR+ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 182 EVRGEVYMAKSDFLALNAQMEAEGRQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWG 241 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S + A+ Q M++ + GFPVN R+ + I+++Y E+ R+ L YDIDG+VY Sbjct: 242 EMSTMPAETQSGMVEAFKRWGFPVNPLTRRLTSVEEIIAHYREIGLQRADLDYDIDGVVY 301 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW +HKF +QA T + IDIQ+GRTG LTPVARLEP+ +G Sbjct: 302 KVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTTVEAIDIQVGRTGALTPVARLEPITVG 361 Query: 365 GALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 G ++TNATLHN DYI+G+ G+ +R G DIR+GD V+V+RAG+VIP+V+D+++ +R Sbjct: 362 GVVVTNATLHNADYIEGIGNGGERIRPEGHDIRIGDTVIVQRAGDVIPQVLDVVLEKRPE 421 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 + + FP CP+C S VR+ N KTGKL + RCTGG CSAQ E +KHFVSR+AF+I Sbjct: 422 TSVKYEFPKTCPVCGSHAVREKNEKTGKLDSVTRCTGGFVCSAQAKEHIKHFVSRNAFDI 481 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGDVSVTNLYDSI 542 EGLG +Q+DFFF+SEDPA IR DIFTL++RQ+ S T++ENI GFG VSV L+D+I Sbjct: 482 EGLGTKQVDFFFESEDPALMIRTAPDIFTLKQRQEASSLTRLENIDGFGRVSVRKLFDAI 541 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 + RR I+L RFIF+LGIRHVG A+ LA+ Y SY FA + + W L + Sbjct: 542 DARREIALNRFIFALGIRHVGETTAKLLARSYGSYAAFADAMQEAAPKFGEAWNELNSID 601 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G+++A ++VEF++ PRN+ V LLKEV+P S + K +VFTG+L++ Sbjct: 602 GIGEVVAASMVEFFKEPRNLEVVSRLLKEVTPLDAEAVTASDSPVAGKTVVFTGSLERFT 661 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V+ +S+KTD ++ G GSKL+KA+++GV +M E+++L L+ Sbjct: 662 RDEAKARAESLGAKVAGSVSKKTDYLVAGPGAGSKLDKAREVGVTVMTEDEWLALI 717 >gi|227822641|ref|YP_002826613.1| NAD-dependent DNA ligase LigA [Sinorhizobium fredii NGR234] gi|254781400|sp|C3MEL9|DNLJ_RHISN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|227341642|gb|ACP25860.1| DNA ligase [Sinorhizobium fredii NGR234] Length = 717 Score = 870 bits (2249), Expect = 0.0, Method: Composition-based stats. Identities = 353/715 (49%), Positives = 493/715 (68%), Gaps = 4/715 (0%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + P+E L+ +A +EL+ L E++ HD Y+ P I D++YDALKRR D I FP Sbjct: 4 EKKPVEQLTETEAAEELAFLVTELARHDALYHGQDAPEISDADYDALKRRNDLIEELFPA 63 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L R + P KIG +L+ V H+ P LSL+ ++ ED R F+ IYRF K D+ Sbjct: 64 LIRE---DSPSRKIGAAPSLTFQPVLHARPMLSLDNTFSDEDARDFVAGIYRFLGKLPDH 120 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 SI FT EPKIDG +++RYE K V AA RGDG +GE+V+A IR I IP+ L + P++ Sbjct: 121 SIAFTAEPKIDGLSMSLRYENRKLVTAATRGDGTTGENVTANIRTIRMIPQTLPADAPDV 180 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +EVRGE+Y++K+DF ALN EM A GR Y NPRN ASG LR+L+ +R L FF + Sbjct: 181 VEVRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRKLRFFAYAW 240 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G+ S + + Q+ M++ + GFPVN +++ ++ ++ +Y+ ++ R L YDIDG+V Sbjct: 241 GEISAMPSDTQFGMVETFKAWGFPVNPLMQRLSSADELLQHYHHIERERPDLDYDIDGVV 300 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD LQ +LG R+RSPRW +HKF +QA TRL IDIQ+GRTG LTPVARLEP+ + Sbjct: 301 YKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITV 360 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++TNATLHNEDYI+G+ SG+ +R GRDIR+GD V+V+RAG+VIP++VD++++ER Sbjct: 361 GGVVVTNATLHNEDYIRGIGNSGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERAE 420 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 A+P+ FP+ CP+C S VRD+N KTGK+ A RCTGG C AQ +E LKHFVSR AF+I Sbjct: 421 GAEPYRFPTTCPVCGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAIEHLKHFVSRHAFDI 480 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG +Q++FFF+SEDP SIR DIFTL+RRQ+ S TK+ENI GFG VSV LY++IN Sbjct: 481 EGLGSKQIEFFFESEDPTLSIRTAPDIFTLERRQEASLTKLENIEGFGKVSVRKLYEAIN 540 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 RR I+L RFI++LGIRHVG A+ LA+ Y +Y++F + + + D W L + Sbjct: 541 ARREIALHRFIYALGIRHVGETTAKLLARSYGTYEHFRAAMVDAGSLAGDAWNELNSIEG 600 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G+++A+AIVEFY+ PRN+ V LL+EV P + S + K +VFTG+L+K+ R Sbjct: 601 IGEVVARAIVEFYKEPRNLKVVSDLLEEVRPESAETRVSTDSPVAGKTVVFTGSLEKMTR 660 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 661 DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 715 >gi|209550159|ref|YP_002282076.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|254781399|sp|B5ZWH9|DNLJ_RHILW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|209535915|gb|ACI55850.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 718 Score = 869 bits (2246), Expect = 0.0, Method: Composition-based stats. Identities = 339/712 (47%), Positives = 491/712 (68%), Gaps = 5/712 (0%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ FP+L R Sbjct: 8 VDTLTIEEAAAELERLAKEIAHHDALYHGKDRPQISDADYDALKRRNDALEVQFPELIRE 67 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P ++G +++ V H+ P LSL+ ++ ED++ F+ +YRF + D SI F Sbjct: 68 ---DSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRLPDQSIAF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P ++E+R Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G+ S Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A Q++M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD Sbjct: 245 EMPADTQFDMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +LG R+RSPRW +HKF +QA T + I+IQ+GRTG LTPVARL+P+ +GG + Sbjct: 305 SLELQARLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364 Query: 368 ITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TNATLHNEDYIKG+ SG+ +R DIR GD V+V+RAG+VIP+++D+++ +R DA+ Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEDHDIREGDTVIVQRAGDVIPQILDVVMEKRTADAR 424 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + FP CP+C S VR++N KTGK+ + RCTGG C AQ E LKHFVSR+AF+IEGL Sbjct: 425 SYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+DFFF+ ED + IR +IFTL++RQQ S TK+ENI GFG VSV LY +IN+RR Sbjct: 485 GSKQIDFFFEHEDASLQIRTAPEIFTLEKRQQASLTKLENIDGFGKVSVGKLYTAINERR 544 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I+L RFI++LGIRHVG A+ LA+ Y +Y+ FA + + D W L + +G+ Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFAMAMKEAAPLSGDAWNDLNAIEGIGE 604 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+A+VEFY+ PRN+ + L++EV+P S + K +VFTG+L+K R +A Sbjct: 605 VVARAMVEFYKEPRNVEVITRLIEEVTPQQAEQPVTTGSPVAGKTVVFTGSLEKFTRDEA 664 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716 >gi|190892570|ref|YP_001979112.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652] gi|254781398|sp|B3PTU7|DNLJ_RHIE6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190697849|gb|ACE91934.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652] Length = 718 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 339/712 (47%), Positives = 491/712 (68%), Gaps = 5/712 (0%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ FP+L R Sbjct: 8 VDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +G +++ V H+ P LSL+ ++ ED++ F+ +YRF + D SI F Sbjct: 68 ---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P ++E+R Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G+ + Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMA 244 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A Q+ M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD Sbjct: 245 EMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ++LG R+RSPRW +HKF +QA T + I+IQ+GRTG LTPVARL+P+ +GG + Sbjct: 305 SLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364 Query: 368 ITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TNATLHNEDYIKG+ SG+ +R DIR GD V+V+RAG+VIP+++D+++ +R DA+ Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRAADAR 424 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + FP CP+C S VR++N KTGK + RCTGG C AQ E LKHFVSR+AF+IEGL Sbjct: 425 SYEFPKTCPVCGSHAVREVNEKTGKTDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+DFFF++EDP+ IR +IFTL++RQQ S TK+ENI GFG VSV LY +IN+RR Sbjct: 485 GSKQVDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYAAINERR 544 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I+L RFI++LGIRHVG A+ LA+ Y +Y+ FA + + + W L + +G+ Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGEAWTDLNAIEGIGE 604 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+A+VEFY+ PRN+ + LL EV+P+ S + K +VFTG+L+K R +A Sbjct: 605 VVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFTRDEA 664 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716 >gi|241205543|ref|YP_002976639.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859433|gb|ACS57100.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 718 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 341/716 (47%), Positives = 489/716 (68%), Gaps = 5/716 (0%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ FP+ Sbjct: 4 ESSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDRPEISDADYDALKRRNDALEVRFPE 63 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L R + P +G +++ V H+ P LSL+ ++ ED++ F+ +YRF + D Sbjct: 64 LIRE---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQ 120 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 SI FT EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P + Sbjct: 121 SIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAV 180 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + Sbjct: 181 VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW 240 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G+ SE+ A Q+ M+Q + GFPVN V++ N+ I+++Y+E+ R L YDIDG+V Sbjct: 241 GEMSEMPADTQFGMVQTFKDWGFPVNPLVKRLNSVADILTHYDEIGLERPDLDYDIDGVV 300 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD LQ +LG R+RSPRW +HKF +QA T + +IDIQ+GRTG LTPVARL P+ + Sbjct: 301 YKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLTPITV 360 Query: 364 GGALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 GG ++TNATLHN DYI+G+ SG+ +R DIR+GD V+V+RAG+VIP+V+D+++ +R Sbjct: 361 GGVVVTNATLHNADYIRGIGNSGERIRADEHDIRIGDTVIVQRAGDVIPQVLDVVMEKRS 420 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 +A+P+ FP CP+C S VR+ + KTGKL + RCTGG C AQ E LKHFVSR+AF+ Sbjct: 421 AEARPYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQATEHLKHFVSRNAFD 480 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG +Q+DFFF++ED + IR DIFTL++RQQ S TK+ENI GFG VSV LY +I Sbjct: 481 IEGLGSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYAAI 540 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 +RR+I+L RFI++LGIRHVG A+ LA+ Y +Y F + A + D W L + Sbjct: 541 TERRSIALHRFIYALGIRHVGETTAKLLARSYGTYAAFETAMREAEALSGDAWNDLNAIE 600 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G+++A+AIVEFY+ PRN+ + L++EV+P K S + K +VFTG+L+K Sbjct: 601 GIGEVVARAIVEFYKEPRNVEVITRLIEEVTPEEAEQPKTAGSPVAGKTVVFTGSLEKFT 660 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA V+ +S+KTDI++ G GSKL+KA++ GV+ M+E+++L L+ Sbjct: 661 RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKAREFGVQTMDEDEWLALI 716 >gi|327194610|gb|EGE61460.1| DNA ligase (NAD+) protein [Rhizobium etli CNPAF512] Length = 718 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 340/712 (47%), Positives = 492/712 (69%), Gaps = 5/712 (0%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+IE+A EL L +EI++HD Y+ +P I D++YDALKRR DA+ FP+L R Sbjct: 8 VDTLTIEEAAAELERLAKEIAHHDSLYHGKDQPEISDADYDALKRRNDALEVRFPELIRE 67 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +G +++ V H+ P LSL+ ++ ED++ F+ +YRF + D SI F Sbjct: 68 ---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P ++E+R Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G+ + Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMA 244 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A Q+ M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD Sbjct: 245 EMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ++LG R+RSPRW +HKF +QA T + I+IQ+GRTG LTPVARL+P+ +GG + Sbjct: 305 SLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITVGGVV 364 Query: 368 ITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TNATLHNEDYIKG+ SG+ +R DIR GD V+V+RAG+VIP+++D+++ +R DA+ Sbjct: 365 VTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRAADAR 424 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 + FP CP+C S VR++N KTGK+ + RCTGG C AQ E LKHFVSR+AF+IEGL Sbjct: 425 SYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+DFFF++EDP+ IR +IFTL++RQQ S TK+ENI GFG VSV LY +IN+RR Sbjct: 485 GAKQVDFFFENEDPSLQIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYAAINERR 544 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I+L RFI++LGIRHVG A+ LA+ Y +Y+ FA + + D W L + +G+ Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNAIEGIGE 604 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+A+VEFY+ PRN+ + LL EV+P+ S + K +VFTG+L+K R +A Sbjct: 605 VVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTGSLEKFTRDEA 664 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALI 716 >gi|307944884|ref|ZP_07660221.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4] gi|307771808|gb|EFO31032.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4] Length = 721 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 323/720 (44%), Positives = 465/720 (64%), Gaps = 9/720 (1%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 + + + +EAL+ EQA EL L I+ HD Y+Q P I D++YDAL+RR AI Sbjct: 7 VSAFEKLDVEALTSEQAETELERLANAIAKHDKLYHQDDAPAISDADYDALRRRNTAIEA 66 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FPDL R + P +G + + K+ H +P LSL+ +N ED++ F+ R+ RF + Sbjct: 67 RFPDLVRD---DSPSRNVGAAPSEAFSKIEHKVPMLSLDNAFNDEDVQDFVGRVRRFLKF 123 Query: 121 KDD-NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 ++ T EPKIDG +++RYE G VYAA RGDG +GE+V+A + I IP+ LS Sbjct: 124 DPLMGALAVTAEPKIDGLSLSLRYEAGALVYAATRGDGTTGENVTANAKTISDIPQKLSG 183 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 + P+++E+RGEVY++ DF LN M A G K +ANPRNAA+G LR+L +R L F Sbjct: 184 DAPDVVEIRGEVYMAHADFQVLNQRMEANGGKVFANPRNAAAGSLRQLKSEITASRPLKF 243 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + G S + A Q M+++M+ GF +N +++ T +++ Y+ ++ R+TL YD Sbjct: 244 FAYAWGDMSALPADTQMGMVEQMKVWGFQINPLMKRCETVEELLAVYHGIEEDRATLGYD 303 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD LQ++LG +RSPRW I+HKF ++A T L +IDIQ+GRTG LTPVA+L Sbjct: 304 IDGVVYKVDRLDLQQRLGFVSRSPRWAIAHKFPAEKAYTILNEIDIQVGRTGALTPVAKL 363 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GG +++NATLHNEDYIKG+ G+ +RGG+D+R GD V V+RAG+VIP++VD+ + Sbjct: 364 EPVTVGGVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRPGDTVQVQRAGDVIPQIVDVDL 423 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ++R A+PF FPS CP C S VR+ NPKTG+L A RCTG L C AQ ERLKHFVSR Sbjct: 424 SKRKEGAEPFEFPSVCPRCGSHAVREENPKTGRLDAVRRCTGALICPAQATERLKHFVSR 483 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +AF+IEG G +Q+D FF ++ ADIFTL+ R + S TK+ N G+G VS NL Sbjct: 484 NAFDIEGFGDKQVDAFFAD----GLVKTAADIFTLEERDKQSLTKLRNREGWGTVSAKNL 539 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +++IN +RNI L R IF LGIRHVG A+ LA+ Y S+Q F + N + W L Sbjct: 540 FEAINAKRNIDLHRLIFGLGIRHVGEGNAKLLARAYGSWQAFYDAMVKAHDKNGEAWEDL 599 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + +G I+A+A+ EF+ N ++ALL ++SP + S + K +VFTG L Sbjct: 600 NAIDGIGHIVAEALTEFFAEEHNREQLDALLAQISPKQVEQIDSSGSPVAGKTVVFTGAL 659 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R +A+ +LGA VS +S+KTD+++ G GSKL+KAQ L ++++ E+ + L+ Sbjct: 660 ERMTRDEAKAMAERLGAKVSGSVSKKTDLLVAGPGAGSKLKKAQGLQIEVITEDVWFDLV 719 >gi|254470147|ref|ZP_05083551.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062] gi|211960458|gb|EEA95654.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062] Length = 722 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 317/713 (44%), Positives = 466/713 (65%), Gaps = 5/713 (0%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 IEAL+ E+A EL L + I+ +D+ Y+ PI+ D+ YD L+RR A+ FP+L R Sbjct: 10 DIEALNAEEAALELERLARLIAEYDEAYHTQDAPIVDDATYDGLRRRNAALEAKFPELVR 69 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NSI 126 + + P N++GG + K+TH++P LSL+ ++ ED++ FI ++ RF + ++ Sbjct: 70 A---DSPSNRVGGAVAEGFGKITHAVPMLSLDNAFSDEDVQDFIGKVRRFLKYDPLMGAL 126 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 T EPKIDG +++RYE GK VYAA RGDG +GE+V+A I IP+ L +P+++E Sbjct: 127 AVTAEPKIDGLSLSLRYESGKLVYAATRGDGATGENVTANALTIQDIPQELPAGVPDVVE 186 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245 VRGEVY+S DF ALN M A G K +ANPRNAA+G LR+LNP TR L FF + G Sbjct: 187 VRGEVYMSHADFAALNARMEANGGKVFANPRNAAAGSLRQLNPEITKTRPLKFFAYAWGD 246 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE+ A Q M++ GF +N +++ T ++ Y+ ++ RS L YDIDG+VYK Sbjct: 247 MSEVPADTQMGMVELFGAWGFQINPLMKRCETVEALLKVYHGIEEDRSGLGYDIDGVVYK 306 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD LQ +LG +RSPRW I+HKF ++A T L I+IQ+GRTG LTPVA+LEPV +GG Sbjct: 307 VDRLDLQGRLGFVSRSPRWAIAHKFPAERAFTTLNAIEIQVGRTGALTPVAKLEPVTVGG 366 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYIKG+ G+ +R +D+RVGD V+++RAG+VIP++VD+ +++R D Sbjct: 367 VVVSNATLHNEDYIKGIGQDGESIRDSKDLRVGDTVIIQRAGDVIPQIVDVDLSKRAEDV 426 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 QP+ FP+ CP+C S +R+ NP +GK+ A RCTGGL C AQ +E+LKHFVSR+AF+IEG Sbjct: 427 QPYEFPTECPVCNSHAIRETNPNSGKVDAVRRCTGGLICPAQAVEKLKHFVSRNAFDIEG 486 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++Q++ F++ + IR PADIFTL R + S K+ + GFG VS L+++I+ + Sbjct: 487 LGEKQMEAFYEYDMDKGGIRTPADIFTLAERDKVSLNKLRSREGFGAVSARKLFEAIDSK 546 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I L R IF LGIRHVG A+ LA+ Y S+Q F + ++ + L + +G Sbjct: 547 RQIELNRVIFGLGIRHVGEGNAKLLARAYSSWQGFYDAMIAATDTTSEAYRELNDIDGIG 606 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +A A+VEF+ N+ A+ AL+++++P S + K LVFTG+L+++ R + Sbjct: 607 GTVANALVEFFAEEHNLTALAALMEQITPLDVVVADTSGSPVAGKTLVFTGSLERMSRDE 666 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ LGA VS +S+KTD++I G GSKL KAQ LG+ +++E+ + L+ Sbjct: 667 AKARAESLGAKVSGSVSKKTDLVIAGPKAGSKLTKAQSLGIDVISEDDWFELV 719 >gi|254502790|ref|ZP_05114941.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11] gi|222438861|gb|EEE45540.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11] Length = 725 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 313/715 (43%), Positives = 466/715 (65%), Gaps = 9/715 (1%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I + L+ E A+ EL L EI+ HD Y+Q P I D++YDAL+RR AI FPDL Sbjct: 16 IAVLDLTPEAAKAELERLASEIAEHDRRYHQEDAPTISDADYDALRRRNSAIEARFPDLI 75 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NS 125 ++ P+ ++G K+TH +P LSL+ ++ +D+R F+ R+ RF + + Sbjct: 76 LADGPSA---QVGAAPASGFGKITHRVPMLSLDNAFSDDDVRDFVGRVRRFLKFDPLMGA 132 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + T EPKIDG +++RYE GK VYAA RGDG +GE+V+A + I IP L+ ++ +++ Sbjct: 133 LAVTAEPKIDGLSLSLRYEDGKLVYAATRGDGTTGENVTANAKTITDIPHTLAGSVLDVV 192 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++ DF ALN M+A G K +ANPRNAA+G LR+L +R L FF + G Sbjct: 193 EVRGEVYMAHKDFEALNARMVANGGKVFANPRNAAAGSLRQLKSEITASRPLRFFAYAWG 252 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S + Q M+ ++ GF +N +++ T +++ Y+ ++ R+ L YDIDG+VY Sbjct: 253 EMSTLPKDTQDGMVAQLAAWGFQINPLMKRCETVEELLAVYHGIEENRAQLDYDIDGVVY 312 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ++LG +RSPRW I+HKF +QA T L DI+IQ+GRTG LTPVA+LEP+ +G Sbjct: 313 KVDRLDLQERLGFVSRSPRWAIAHKFPAEQAWTVLNDIEIQVGRTGALTPVAKLEPITVG 372 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYIKG+ G+ +RGG+D+R GD V ++RAG+VIP++VD+ +++R Sbjct: 373 GVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRKGDAVKIQRAGDVIPQIVDVDLDKRLDG 432 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+P+ FP+ CP C S VR+ N KTG+ A RCTGGL C AQ E+LKHFVSR+AF+IE Sbjct: 433 AEPYEFPTRCPRCNSHAVREENEKTGRKDAVRRCTGGLICPAQATEKLKHFVSRNAFDIE 492 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G G +Q+D F++ + + ADIFTL R + S TK+ N G+G VS NL+++I+ Sbjct: 493 GFGDKQVDAFYQDD----LVMTAADIFTLAERDKQSLTKLRNREGWGAVSAKNLFEAIDA 548 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RR I L RFIF+LGIRHVG A+ LA+ Y S+ NF + + H ++ W L + + Sbjct: 549 RREIDLHRFIFALGIRHVGEGNAKLLARAYGSWANFYKAMTEASDHGSEAWAELNDIDGI 608 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G I+A A+VEF+ N ++ALL+EV+P+ S + K +VFTG+L+++ R Sbjct: 609 GHIVADALVEFFAENHNREQLDALLQEVTPTDAEKIDASGSPVAGKTVVFTGSLERMTRD 668 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ + GA VS +S+KTD+++ G GSKL+KA +L +++++E+ + L+ Sbjct: 669 EAKAMAERFGAKVSGSVSKKTDLVVAGPGAGSKLKKASELEIEVISEDDWFDLVD 723 >gi|254719452|ref|ZP_05181263.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13] gi|265984457|ref|ZP_06097192.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13] gi|306839229|ref|ZP_07472046.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653] gi|264663049|gb|EEZ33310.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13] gi|306405776|gb|EFM62038.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653] Length = 719 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 340/724 (46%), Positives = 477/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYEDGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPSVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ +R D Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDVVLEKRSAD 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A PF FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 AVPFQFPHECPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA SIR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALSIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|325293451|ref|YP_004279315.1| DNA ligase [Agrobacterium sp. H13-3] gi|325061304|gb|ADY64995.1| DNA ligase [Agrobacterium sp. H13-3] Length = 724 Score = 852 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 343/726 (47%), Positives = 486/726 (66%), Gaps = 12/726 (1%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K Q IP+E L+ +A EL+ L E++ HD Y+ P I D++YDALKRR DAI Sbjct: 1 MSKDQ-IPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEA 59 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFP L R+ + P K+G + + H+ P LSL+ ++ DLR F++ +YRF Sbjct: 60 AFPALVRA---DSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSEGDLRDFVSSVYRFLGH 116 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D+SI FT EPKIDG ++IRYE GK AA RGDG +GE+V+A I+ I IP L + Sbjct: 117 LPDDSIAFTAEPKIDGLSMSIRYENGKLKTAATRGDGTTGENVTANIKTIKEIPNQLPAD 176 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P+++EVRGEVY++K+DF+ALN +M A G++ Y NPRN ASG LR+ + R L FF Sbjct: 177 VPDVVEVRGEVYMAKSDFMALNAQMEADGKQTYVNPRNTASGSLRQFDANVTAKRKLRFF 236 Query: 240 VHGLGKTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + LG+ S A QY +++K R GFPVN +++ + ++ +YNE+ R Sbjct: 237 AYALGEVSNGGQPTRIADTQYGIVEKFREWGFPVNPLMKRFTSAEQLLEHYNEIGVARPD 296 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDG+VYKVD LQ++LG R+RSPRW +HKF +QA T + +I+IQ+GRTG LTP Sbjct: 297 LDYDIDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTP 356 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKV 413 VARL P+ +GG ++TNATLHN DYI+G+ SG+ +R DIR+GD V+V+RAG+VIP+V Sbjct: 357 VARLTPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQV 416 Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 +D+++ +R +A ++FP CP+C S VR+ N KTGKL + RCTGG C AQ +E LK Sbjct: 417 LDVLLEKRPAEAVKYAFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLK 476 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGD 532 HFVSR+AF+IEGLG +Q+DFFF+SEDPA SI+ DIFTL+ RQ+ S TK+ENI GFG Sbjct: 477 HFVSRNAFDIEGLGSKQIDFFFESEDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGK 536 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 VSV L+D+I+ RR I L R IF+LGIRHVG A+ LA+ Y +Y++F + + + Sbjct: 537 VSVKKLFDAIDARREIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEEAMKAAADPAS 596 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 D W L + +G+++A+AI+EFY+ PRN+ ++ L++E+ P S + K + Sbjct: 597 DAWAELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELRPKEAEKPSTEGSPVAGKTV 656 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTG+L+K R +A+ LGA V+ +S+KTDI++ G GSKL KA +LGV+ M+E+ Sbjct: 657 VFTGSLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKAAELGVQTMDED 716 Query: 713 QFLFLL 718 ++L L+ Sbjct: 717 EWLALI 722 >gi|150397271|ref|YP_001327738.1| NAD-dependent DNA ligase LigA [Sinorhizobium medicae WSM419] gi|166216245|sp|A6UB73|DNLJ_SINMW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150028786|gb|ABR60903.1| DNA ligase, NAD-dependent [Sinorhizobium medicae WSM419] Length = 717 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 344/715 (48%), Positives = 489/715 (68%), Gaps = 4/715 (0%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 Q P+E ++ +A +EL+ L E+S HD Y+ P I D++YDALKRR D I FP Sbjct: 4 QRKPVEQMTEAEAAEELAFLAAELSRHDMLYHGKDDPEISDADYDALKRRNDLIEERFPA 63 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L R + P K+G +L+ V H+ P LSL+ ++ ED R F+ IYRF + D Sbjct: 64 LIRE---DSPSQKVGAAPSLTFAPVVHARPMLSLDNSFSDEDARAFVAGIYRFLGRLPDG 120 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 SI FT+EPKIDG +++RYE + V AA RGDG +GE+V+A +R I IP+ L P++ Sbjct: 121 SIAFTVEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANVRTIGMIPQRLPAEAPDV 180 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGE+Y++K+DF ALN EM A GR Y NPRN ASG LR+L+ +R L FF + Sbjct: 181 VEIRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRRLRFFAYAW 240 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G+ S + A Q M++ + GFPVN +++ + ++ +Y+ ++ R L YDIDG+V Sbjct: 241 GEMSAMPADTQLGMVETFKAWGFPVNPLMQRFFSADELLEHYHHIERERPELDYDIDGVV 300 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD+ LQ +LG R+RSPRW +HKF ++A TRL IDIQ+GRTG LTPVARLEP+ + Sbjct: 301 YKVDQLDLQARLGFRSRSPRWATAHKFPAERAFTRLKGIDIQVGRTGALTPVARLEPITV 360 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG ++TNATLHNEDYI+G+ +G+ +R GRDIR+GD V+V+RAG+VIP++VD++++ER Sbjct: 361 GGVVVTNATLHNEDYIRGIGNTGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERPE 420 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 +P+ FP+ CPIC S VRD+N KTGK+ A RCTGG C AQ +E LKHFVSR+AF+I Sbjct: 421 GTEPYRFPTSCPICGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDI 480 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG +Q++FFF+SED IR DIFTL+RRQ++S TK+ENI GFG VSV LY++IN Sbjct: 481 EGLGSKQIEFFFESEDETLRIRTAPDIFTLERRQESSLTKLENIDGFGKVSVRKLYEAIN 540 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 RR+I L RFI++LGIRHVG A+ LA+ Y +Y++F + + D W L + Sbjct: 541 ARRSIGLHRFIYALGIRHVGETTAKLLARSYGTYEHFGAAMTEAGGFSGDAWNELNSIDG 600 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 +G+++A+AIVEFY+ PRN+ + LL+EV+P S + K +VFTG+L+K+ R Sbjct: 601 IGEVVARAIVEFYKEPRNLKVLSDLLEEVTPERAEMPVATDSPVAGKTVVFTGSLEKMTR 660 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ LGA V+ +S+KTDI++ G GSKL+KA++LG++ M+E+++L L+ Sbjct: 661 DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGLQTMDEDEWLALI 715 >gi|116253034|ref|YP_768872.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. viciae 3841] gi|123261370|sp|Q1ME47|DNLJ_RHIL3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115257682|emb|CAK08780.1| putative DNA ligase [Rhizobium leguminosarum bv. viciae 3841] Length = 718 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 343/712 (48%), Positives = 493/712 (69%), Gaps = 5/712 (0%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+IE+A EL+ L +EI++HD Y+ +P I D++YDALKRR DA+ FP+L R Sbjct: 8 VDTLTIEEAAAELARLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVRFPELIRE 67 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +G +++ V H+ P LSL+ ++ ED++ F+ +YRF + D SI F Sbjct: 68 ---DSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAF 124 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG ++IRYE G+ V AA RGDG +GE+V+A IR I IP L +P ++E+R Sbjct: 125 TAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAVVEIR 184 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G+ S Sbjct: 185 GEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMS 244 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A Q+ M+Q + GFPVN +++ N+ I+++Y+E+ R L YDIDG+VYKVD Sbjct: 245 EMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVVYKVD 304 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 LQ +LG R+RSPRW +HKF +QA T + +IDIQ+GRTG LTPVARL P+ +GG + Sbjct: 305 SLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLTPITVGGVV 364 Query: 368 ITNATLHNEDYIKGLDASGKVMRG-GRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +TNATLHN DYI+G+ SG+ +R DIR+GD V+V+RAG+VIP+V+D+++ +R +A+ Sbjct: 365 VTNATLHNADYIQGIGNSGERIRDDEHDIRIGDTVIVQRAGDVIPQVLDVVMEKRPAEAR 424 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP+C S VR+ + KTGKL + RCTGG C AQ E LKHFVSR+AF+IEGL Sbjct: 425 PYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQATEHLKHFVSRNAFDIEGL 484 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+DFFF++ED + IR DIFTL++RQQ S TK+ENI GFG VSV LY +I++RR Sbjct: 485 GSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYGAIDERR 544 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I+L RFI++LGIRHVG A+ LA+ Y +Y+ F + A + D W L + +G+ Sbjct: 545 SIALHRFIYALGIRHVGETTAKLLARSYGTYEAFETAMREAEALSGDAWNDLNAIEGIGE 604 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+AIVEFY+ PRN+ + LL+EV+P K S + K +VFTG+L+K+ R +A Sbjct: 605 VVARAIVEFYKEPRNVEVITRLLEEVTPEEAEQPKTAGSPVAGKTVVFTGSLEKLTRDEA 664 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTDI++ G GSKL+KA++LGV+ M+E+Q+L L+ Sbjct: 665 KARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDQWLALI 716 >gi|15889366|ref|NP_355047.1| NAD-dependent DNA ligase LigA [Agrobacterium tumefaciens str. C58] gi|166215388|sp|A9CIB3|DNLJ_AGRT5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|15157212|gb|AAK87832.1| DNA ligase [Agrobacterium tumefaciens str. C58] Length = 724 Score = 850 bits (2196), Expect = 0.0, Method: Composition-based stats. Identities = 345/726 (47%), Positives = 484/726 (66%), Gaps = 12/726 (1%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K Q IP+E L+ +A EL+ L E++ HD Y+ P I D++YDALKRR DAI Sbjct: 1 MSKDQ-IPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEA 59 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFP L R+ + P K+G + + H+ P LSL+ ++ EDLR F++ +YRF Sbjct: 60 AFPALVRA---DSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGH 116 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D+SI FT EPKIDG ++IRYE K AA RGDG +GE+V+A IR I IP L + Sbjct: 117 LPDDSIAFTAEPKIDGLSMSIRYENRKLKTAATRGDGTTGENVTANIRTIKEIPNELPAD 176 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P+++EVRGEVY++K+DFLALN +M A G++ Y NPRN ASG LR+L+ R L FF Sbjct: 177 APDVVEVRGEVYMAKSDFLALNAQMEADGKQTYVNPRNTASGSLRQLDANVTAKRKLRFF 236 Query: 240 VHGLGKTSE-----IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 + LG+ S A QY +++K R GFPVN +++ + ++ +YNE+ R Sbjct: 237 AYALGEVSNGGQPARIADTQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARPD 296 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 L YDIDG+VYKVD LQ++LG R+RSPRW +HKF +QA T + +I+IQ+GRTG LTP Sbjct: 297 LDYDIDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTP 356 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGG-RDIRVGDRVLVKRAGEVIPKV 413 VARL P+ +GG ++TNATLHN DYI+G+ SG+ +R DIR+GD V+V+RAG+VIP+V Sbjct: 357 VARLTPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQV 416 Query: 414 VDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLK 473 +D+++ +R A + FP CP+C S VR+ N KTGKL + RCTGG C AQ +E LK Sbjct: 417 LDVLLEKRAAGAAKYVFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLK 476 Query: 474 HFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGD 532 HFVSR+AF+IEGLG +Q+DFFF+S+DPA SI+ DIFTL+ RQ+ S TK+ENI GFG Sbjct: 477 HFVSRNAFDIEGLGTKQIDFFFESDDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGK 536 Query: 533 VSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN 592 VSV L+D+I+ RR I L R IF+LGIRHVG A+ LA+ Y +Y++F + + + Sbjct: 537 VSVKKLFDAIDARRAIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEKAMKAAADPAS 596 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 D W L + +G+++A+AI+EFY+ PRN+ ++ L++E+ P S + K + Sbjct: 597 DAWAELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELQPKEAEKPSTEGSPVAGKTV 656 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTG+L+K R +A+ LGA V+ +S+KTDI++ G GSKL KA +LGV+ M+E+ Sbjct: 657 VFTGSLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKATELGVQTMDED 716 Query: 713 QFLFLL 718 ++L L+ Sbjct: 717 EWLALI 722 >gi|118590881|ref|ZP_01548281.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614] gi|118436403|gb|EAV43044.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614] Length = 750 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 314/714 (43%), Positives = 463/714 (64%), Gaps = 9/714 (1%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I+AL+ E+A+ EL L EI+ HD Y+Q P+I D++YDAL+RR +I FP+L Sbjct: 42 TDIDALTQEEAQVELKRLAAEIAEHDRRYHQEDAPVISDADYDALRRRNASIEARFPNLI 101 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD-NS 125 + P+ ++G K+TH +P LSL+ +N +D+R F+ R+ RF + + Sbjct: 102 LDDGPSA---QVGAAPASGFGKITHRVPMLSLDNAFNDDDVRDFVGRVRRFLKYDPLMGA 158 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + T EPKIDG +++RYE G VYAA RGDG +GE+V+ + I IP LS +P+++ Sbjct: 159 LAVTAEPKIDGLSLSLRYENGTLVYAATRGDGTTGENVTENAKTIKDIPEKLSGTVPDVV 218 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++ DF ALN+ M A G K +ANPRNAA+G LR+L +R L FF + G Sbjct: 219 EVRGEVYMAHKDFQALNERMAANGGKVFANPRNAAAGSLRQLKSEITASRPLRFFAYAWG 278 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S + Q+ M++++ GF +N +R+ T ++ Y+ ++ R+ L YDIDG+VY Sbjct: 279 EMSALPEDTQFGMVKQLEAWGFQINPLMRRCETVEELLGVYHGIEESRAQLDYDIDGVVY 338 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ++LG +RSPRW I+HKF +QA T L DI+IQ+GRTG LTPVA+LEP+ +G Sbjct: 339 KVDRLDLQERLGFVSRSPRWAIAHKFPAEQAYTVLNDIEIQVGRTGALTPVAKLEPITVG 398 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYIKG+ G+ +RGG+D+R+GD V ++RAG+VIP++VDI +++R Sbjct: 399 GVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRIGDTVKIQRAGDVIPQIVDIDLDKRPEG 458 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+ F FP+ CP C S VR+ KTG+ A RCTGGL C AQ E+LKHFVSR+AF+IE Sbjct: 459 AEAFEFPTICPACGSHAVREEKEKTGRRDAVRRCTGGLICPAQATEKLKHFVSRNAFDIE 518 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G G +Q+D F+K + PADIFTL+ R + S TK+ N G+G VS NL+++IN Sbjct: 519 GFGDKQVDAFYKE----GLVMAPADIFTLEERDKRSLTKLRNREGWGAVSAKNLFEAINA 574 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RR I L RFIF+LGIRHVG A+ LA+ Y S+ F + ++ W L + + Sbjct: 575 RREIDLHRFIFALGIRHVGEGNAKLLARAYGSWAAFYAAMKAAHDTESEAWAELNDIDGI 634 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G I+A+A+ EF+ N+ ++ALL EVSP S + K +VFTG+L+++ R Sbjct: 635 GHIVAEALAEFFAEQHNLDQLDALLVEVSPKDAEKINASGSPVAGKTVVFTGSLERMTRD 694 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ + GA + +S+KTD+++ G GSKL+KAQ+L +++++E+ + L+ Sbjct: 695 EAKAMAERFGAKTAGSVSKKTDLVVAGPGAGSKLKKAQELEIEVISEDDWFDLV 748 >gi|222086432|ref|YP_002544966.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84] gi|254781247|sp|B9JH39|DNLJ_AGRRK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|221723880|gb|ACM27036.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84] Length = 717 Score = 849 bits (2193), Expect = 0.0, Method: Composition-based stats. Identities = 339/690 (49%), Positives = 471/690 (68%), Gaps = 4/690 (0%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 +D Y+ P I D+EYDALKRR DAI FP L R+ + P ++G + + V Sbjct: 29 RNDALYHGNDAPEISDAEYDALKRRNDAIEARFPALVRA---DSPSRRVGAAPSETFMPV 85 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H+ P LSL+ ++ ED++ F+ +YRF + D SI FT EPKIDG ++IRYE G+ V Sbjct: 86 VHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQSIAFTAEPKIDGLSMSIRYENGRMV 145 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 AA RGDG +GE+V+A IR I IP+ L P ++E+RGEVY++K+DFLALN +M A G Sbjct: 146 SAATRGDGTTGENVTANIRTIKEIPQTLPAGAPAVVEIRGEVYMAKSDFLALNAQMEAEG 205 Query: 210 RKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 ++ Y NPRN A+G LR+L+ +R L FF + G+ S++ A Q+ M+Q GFPV Sbjct: 206 KQSYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMSDMPADTQFGMVQAFGEWGFPV 265 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 N +++ N+ I+++Y+E+ R L YDIDG+VYKVD LQ +LG R+RSPRW +H Sbjct: 266 NPLMKRLNSVADILAHYDEIGLQRPDLDYDIDGVVYKVDSLELQARLGFRSRSPRWATAH 325 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 KF +QA TRLLDIDIQ+GRTG LTPVARLEP+ +GG ++TNATLHN DYIKG+ G+ Sbjct: 326 KFPAEQALTRLLDIDIQVGRTGALTPVARLEPITVGGVVVTNATLHNADYIKGIGNKGEP 385 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 +R GRDIR+GD V+V+RAG+VIP++VD+++ +R + + FP CP+C S VRD+N K Sbjct: 386 IRDGRDIRIGDMVIVQRAGDVIPQIVDVVLEKREASSVAYEFPKTCPVCGSHAVRDINEK 445 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 TGK+ A RCTGG C AQ E LKHFVSR+A++IEGLG +Q+DFFF+S+DPA +R Sbjct: 446 TGKVDAVTRCTGGFICRAQATEHLKHFVSRNAYDIEGLGSKQIDFFFESDDPALQVRTAP 505 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 DIFTL+RRQQ+S +K+ENI GFG VSV+ LY +IN+RR+I+L RFIF+LGIRHVG A+ Sbjct: 506 DIFTLERRQQSSLSKLENIDGFGKVSVSKLYAAINERRDIALHRFIFALGIRHVGETTAK 565 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 LA+ Y +Y+ F + D W L + VG+++A+A+VEFY+ PRN+ + L Sbjct: 566 LLARSYGTYEAFEAGMKEAAPLAGDAWNDLNNIEGVGEVVARAVVEFYKEPRNVEVISKL 625 Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 L EV P S + K +VFTG+L+K R +A+ LGA VS +S+KTDI+ Sbjct: 626 LDEVRPQEAEQPTTSGSPVVGKTVVFTGSLEKFTRDEAKAKAESLGAKVSGSVSKKTDIV 685 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G GSKL+KA++ V++M E+++L L+ Sbjct: 686 VAGPGAGSKLDKAREFNVQVMTEDEWLELI 715 >gi|15965917|ref|NP_386270.1| NAD-dependent DNA ligase LigA [Sinorhizobium meliloti 1021] gi|307308227|ref|ZP_07587936.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C] gi|307319694|ref|ZP_07599119.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83] gi|81634276|sp|Q92NM8|DNLJ_RHIME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|15075186|emb|CAC46743.1| Probable DNA ligase [Sinorhizobium meliloti 1021] gi|306894625|gb|EFN25386.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83] gi|306901225|gb|EFN31831.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C] Length = 717 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 335/690 (48%), Positives = 469/690 (67%), Gaps = 4/690 (0%) Query: 30 YHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKV 89 HD Y+ P I D++YDALKRR D I FP L R + P K+G +L+ V Sbjct: 29 RHDMLYHGKDAPEISDADYDALKRRNDLIEERFPVLVRE---DSPSRKVGAAPSLTFAPV 85 Query: 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFV 149 H+ P LSL+ ++ ED R F+ +YRF K D SI FT EPKIDG +++RYE + V Sbjct: 86 VHARPMLSLDNTFSDEDARAFVAGVYRFLGKLPDGSIAFTAEPKIDGLSMSLRYENRRLV 145 Query: 150 YAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVG 209 AA RGDG +GE+V+A +R I IP+ L + P+++E+RGE+Y++K+DF ALN EM A G Sbjct: 146 TAATRGDGTTGENVTANVRTIGMIPQTLPADAPDVVEIRGEIYMAKSDFAALNAEMAAQG 205 Query: 210 RKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPV 268 R Y NPRN ASG LR+L+ R L FF + G+ S + A Q M++ + GFPV Sbjct: 206 RPLYVNPRNTASGSLRQLDAKVTANRKLRFFAYAWGEMSAMPADTQLGMVETFKAWGFPV 265 Query: 269 NNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISH 328 N +++ + ++ +Y+ ++ R L YDIDG+VYKVD LQ +LG R+RSPRW +H Sbjct: 266 NPLMQRFFSADELLEHYHHIERERPDLDYDIDGVVYKVDRLDLQARLGFRSRSPRWATAH 325 Query: 329 KFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKV 388 KF +QA TRL IDIQ+GRTG LTPVARLEP+ +GG ++TNATLHNEDYI+G+ +G+ Sbjct: 326 KFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITVGGVVVTNATLHNEDYIRGVGNTGEP 385 Query: 389 MRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPK 448 +R GRD+R+GD V+V+RAG+VIP++VD++++ER A+P+ FP+ CPIC S VRD+N K Sbjct: 386 IRDGRDVRIGDMVIVQRAGDVIPQIVDVVMDERPEGAEPYRFPTTCPICGSHAVRDINEK 445 Query: 449 TGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPA 508 TGK+ A RCTGG C AQ +E LKHFVSR+AF+IEGLG +Q++FFF+SED IR Sbjct: 446 TGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDIEGLGSKQIEFFFESEDENLRIRTAP 505 Query: 509 DIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIAR 568 +IFTL+RRQ+ S K+EN GFG VSV LY++IN RR+I+L R I++LGIRHVG A+ Sbjct: 506 EIFTLERRQEASLNKLENTDGFGKVSVRKLYEAINARRSIALHRLIYALGIRHVGETTAK 565 Query: 569 SLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEAL 628 LA+ Y SY++F + + D W L + +G+++A+AIVEFY+ PRN+ V L Sbjct: 566 LLARSYGSYEHFGAAMTEAAGFSGDAWNELNSIDGIGEVVARAIVEFYKEPRNLKVVSEL 625 Query: 629 LKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDII 688 L+EV+P S + K +VFTG+L+K+ R +A+ LGA V+ +S+KTDI+ Sbjct: 626 LQEVTPESAELPVATDSPVAGKTVVFTGSLEKMTREEAKAKAESLGAKVAGSVSKKTDIV 685 Query: 689 IVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + G GSKL+KA++LGV+ M+E+++L L+ Sbjct: 686 VAGPGAGSKLDKARELGVQTMDEDEWLALI 715 >gi|239832299|ref|ZP_04680628.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301] gi|239824566|gb|EEQ96134.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301] Length = 734 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 342/725 (47%), Positives = 475/725 (65%), Gaps = 19/725 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP+E L+ +A EL L +EI++HD+ Y+ +P I D+EYDALKRR DAI FP L Sbjct: 19 IPVEKLTEPEAVSELGRLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLV 78 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R+ + P ++G V H+ P LSL ++ ED+R F+ +YRF + DNSI Sbjct: 79 RT---DSPSLRVGTAPVSKFAPVVHARPMLSLGNAFSDEDVRDFVGSVYRFLGQLPDNSI 135 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++E Sbjct: 136 AFTAEPKIDGLSMSIRYENGVLVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPSVVE 195 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY++K+DFLALN++M A G++ Y NPRN A+G LR+L+ +R L FF + G+ Sbjct: 196 VRGEVYMAKSDFLALNEQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGE 255 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S++ A Q M++ R GFPVN ++ + ++++Y + R TL YDIDG+VYK Sbjct: 256 MSDMPADTQMGMVEMFREWGFPVNPLTKRLHGADELLAHYRAIGLERPTLDYDIDGVVYK 315 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD LQ +LG R+RSPRW I+HKF +QA+T L IDIQ+GRTG LTPVARLEP+ +GG Sbjct: 316 VDRLDLQTRLGFRSRSPRWAIAHKFPAEQATTILRGIDIQVGRTGALTPVARLEPITVGG 375 Query: 366 ALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 ++TNATLHNEDYIKG+ G+ +R DIR+GD V+V+RAG+VIP++VD+I+ +R D Sbjct: 376 VVVTNATLHNEDYIKGIGLKGERIRADEHDIRLGDTVIVQRAGDVIPQIVDVILEKRPVD 435 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A PF FP CP+C S VR+ A +RCTGGL C+AQ +ER++HFVSR+AF+IE Sbjct: 436 AVPFHFPHECPVCGSHAVREEGE------AVYRCTGGLTCAAQAVERIRHFVSRNAFDIE 489 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +ED + I+ PADIFTLQ+RQ S K+ENI GFG SV LYD+IN Sbjct: 490 GLGEKQVEFFFHAEDDSLKIKSPADIFTLQKRQAGSLKKLENIEGFGATSVKKLYDAIND 549 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596 RR I+L RF+F LGIRHVG A+ A+ YLSY F + + N+ W Sbjct: 550 RREIALNRFLFGLGIRHVGEVNAKRFARSYLSYAAFEKAALEAVPPKEGDRTDKGNEAWQ 609 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 LI V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 610 DLIAVEGIGSIVAEAVVDFYAEPHNREVLAALLAEVTPLDEAARVATGSPVEGKTVVFTG 669 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +SRKTD+++ G GSKL KA +LG+++++E+ + Sbjct: 670 SLERMSRDEAKAMAERYGAKTAGSVSRKTDLVVAGPGAGSKLAKASELGIEVIDEDAWFK 729 Query: 717 LLQQY 721 L+ + Sbjct: 730 LVGEE 734 >gi|306844319|ref|ZP_07476911.1| DNA ligase, NAD-dependent [Brucella sp. BO1] gi|306275391|gb|EFM57132.1| DNA ligase, NAD-dependent [Brucella sp. BO1] Length = 719 Score = 845 bits (2182), Expect = 0.0, Method: Composition-based stats. Identities = 337/724 (46%), Positives = 475/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEARFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFLALN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L DIDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRDIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYEFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDVVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|237815820|ref|ZP_04594817.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A] gi|237789118|gb|EEP63329.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A] Length = 725 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 336/730 (46%), Positives = 475/730 (65%), Gaps = 19/730 (2%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI Sbjct: 4 MLYMSDISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEA 63 Query: 61 AFPDLARSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 FP L R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF Sbjct: 64 HFPALVRD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLG 120 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 + D+SI FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L Sbjct: 121 QLPDDSIAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPA 180 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 P ++EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L F Sbjct: 181 GAPAVVEVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRF 240 Query: 239 FVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 F + G+ S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YD Sbjct: 241 FAYAWGEMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARL Sbjct: 301 IDGVVYKVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EP+ +GG ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ Sbjct: 361 EPITVGGVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVL 420 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 E +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR Sbjct: 421 EEGKKRGEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSR 474 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +AF+IEGLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV L Sbjct: 475 NAFDIEGLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKL 534 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AH 590 YD+I+ RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + Sbjct: 535 YDAIDARREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDK 594 Query: 591 NNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 ++ W ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K Sbjct: 595 GSEAWQDMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGK 654 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +VFTG+L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++N Sbjct: 655 TVVFTGSLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVIN 714 Query: 711 EEQFLFLLQQ 720 E+ + L+ + Sbjct: 715 EDDWFKLVGE 724 >gi|306843233|ref|ZP_07475843.1| DNA ligase, NAD-dependent [Brucella sp. BO2] gi|306286556|gb|EFM58135.1| DNA ligase, NAD-dependent [Brucella sp. BO2] Length = 719 Score = 843 bits (2179), Expect = 0.0, Method: Composition-based stats. Identities = 334/724 (46%), Positives = 473/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLVLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LY++I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYEAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|217979603|ref|YP_002363750.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2] gi|254781370|sp|B8ETN6|DNLJ_METSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|217504979|gb|ACK52388.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2] Length = 700 Score = 843 bits (2179), Expect = 0.0, Method: Composition-based stats. Identities = 301/720 (41%), Positives = 449/720 (62%), Gaps = 25/720 (3%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + PI+A+++ QAR+E S L EI+ HD YY+ P + D+EYD L+RR + Sbjct: 1 MSAK---PIDAMTLAQARREHSRLGAEIAAHDARYYREDAPTVSDAEYDRLRRRYGELES 57 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFP+LA P+ K+G + K+ H IP LSL +++ ++ F+ R+ RF Sbjct: 58 AFPELA---SPDSLTKKVGAAPSEKFAKIRHRIPMLSLGNVFSEAEVEDFVARVRRFLGL 114 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + S+ T EPKIDG ++R+E G+FV AA RGDG GEDV+A +R I IP L Sbjct: 115 PTEASLAITAEPKIDGLSCSLRFENGEFVQAATRGDGFEGEDVTANVRTIAEIPARLKGE 174 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFF 239 PE++EVRGEVY++ DF A+N G+ +ANPRNAA+G LR+L+P R L+FF Sbjct: 175 PPEVLEVRGEVYMTHADFAAMNVRQQEAGKPLFANPRNAAAGSLRQLDPNITAGRPLHFF 234 Query: 240 VHGLGKT-SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + G+ A Q M+ + G PVN + ++ +++ Y ++ R+ L YD Sbjct: 235 AYAWGEILPAPPAGTQMGMVAAFKSYGLPVNPLMVLCHSAEELIAKYRSIEEKRAALGYD 294 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD LQ++LG +RSPRW ++HKF +QA+T L DI+IQ+GRTG LTPVARL Sbjct: 295 IDGVVYKVDSLVLQERLGFVSRSPRWAVAHKFPAEQATTVLRDIEIQVGRTGALTPVARL 354 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 +PV +GG + NATLHNED I +D+R+GD V ++RAG+VIP+V+ +++ Sbjct: 355 DPVTVGGVTVANATLHNEDEIAR-----------KDVRIGDTVRIQRAGDVIPQVLGVVL 403 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 N+R +A+P+ FP CPIC S +R+++ KTG RCTGGL C AQ +ERLKHF SR Sbjct: 404 NKRPAEAKPYVFPDHCPICGSAAIREIDEKTGVADVVRRCTGGLICPAQAIERLKHFASR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 +A +IEGLG +Q++ F+ I PADIFTL+ R + + K+++ G+G+ S NL Sbjct: 464 NALDIEGLGDKQIEQFYHD----GLITKPADIFTLEARDKAALKKLKDREGYGETSTRNL 519 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 + +I +RR +L RFI++LGIRHVG AR LA+++ S+ +E A ++ + Sbjct: 520 FRAIEQRRAPALNRFIYALGIRHVGETNARRLARHFGSFSAL-RETGRAAAPGSEARAEI 578 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + VG+++A+A+ +F+ P N A++ALL V+P E + + K +VFTG L Sbjct: 579 NNIEGVGEVVAEAVADFFAEPHNEEALDALLAHVNPQ-PMEEIVSDTPVAGKTVVFTGAL 637 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +++ R +A+ +LGA V+A +S+KTD++I G GSKL KA +LGV+ ++EE +L L+ Sbjct: 638 ERMTRDEAKAMAERLGAKVAASVSKKTDLVIAGPGAGSKLAKAAELGVETISEEDWLKLV 697 >gi|23502291|ref|NP_698418.1| NAD-dependent DNA ligase LigA [Brucella suis 1330] gi|62290313|ref|YP_222106.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 1 str. 9-941] gi|82700237|ref|YP_414811.1| NAD-dependent DNA ligase LigA [Brucella melitensis biovar Abortus 2308] gi|161619368|ref|YP_001593255.1| NAD-dependent DNA ligase LigA [Brucella canis ATCC 23365] gi|163843675|ref|YP_001628079.1| NAD-dependent DNA ligase LigA [Brucella suis ATCC 23445] gi|189024547|ref|YP_001935315.1| NAD-dependent DNA ligase LigA [Brucella abortus S19] gi|225627871|ref|ZP_03785908.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo] gi|254689615|ref|ZP_05152869.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870] gi|254694105|ref|ZP_05155933.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya] gi|254697757|ref|ZP_05159585.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59] gi|254704678|ref|ZP_05166506.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686] gi|254708093|ref|ZP_05169921.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10] gi|254710462|ref|ZP_05172273.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94] gi|254730646|ref|ZP_05189224.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292] gi|256031956|ref|ZP_05445570.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1] gi|256113974|ref|ZP_05454757.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str. Ether] gi|256160155|ref|ZP_05457849.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1] gi|256257864|ref|ZP_05463400.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68] gi|256369836|ref|YP_003107347.1| DNA ligase [Brucella microti CCM 4915] gi|260169093|ref|ZP_05755904.1| NAD-dependent DNA ligase LigA [Brucella sp. F5/99] gi|260546856|ref|ZP_05822595.1| DNA ligase [Brucella abortus NCTC 8038] gi|260566074|ref|ZP_05836544.1| DNA ligase [Brucella suis bv. 4 str. 40] gi|260755142|ref|ZP_05867490.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870] gi|260758361|ref|ZP_05870709.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292] gi|260762187|ref|ZP_05874530.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59] gi|260884154|ref|ZP_05895768.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68] gi|261214403|ref|ZP_05928684.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya] gi|261315595|ref|ZP_05954792.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10] gi|261318033|ref|ZP_05957230.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94] gi|261755371|ref|ZP_05999080.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686] gi|261758598|ref|ZP_06002307.1| DNA ligase [Brucella sp. F5/99] gi|265989064|ref|ZP_06101621.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1] gi|265995315|ref|ZP_06107872.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str. Ether] gi|265998527|ref|ZP_06111084.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1] gi|297248700|ref|ZP_06932418.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196] gi|75496544|sp|Q57C89|DNLJ_BRUAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81752355|sp|Q8FZQ3|DNLJ_BRUSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123768412|sp|Q2YLZ6|DNLJ_BRUA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359236|sp|A9M679|DNLJ_BRUC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|190359237|sp|B0CHK8|DNLJ_BRUSI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781269|sp|B2S6P4|DNLJ_BRUA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|23348266|gb|AAN30333.1| DNA ligase, NAD-dependent [Brucella suis 1330] gi|62196445|gb|AAX74745.1| LigA, DNA ligase, NAD-dependent [Brucella abortus bv. 1 str. 9-941] gi|82616338|emb|CAJ11395.1| BRCT domain:NAD-dependent DNA ligase:ATP/GTP-binding site motif A (P-loop):Zn-finger in NAD-dependent DNA ligase, C4 type:NAD [Brucella melitensis biovar Abortus 2308] gi|161336179|gb|ABX62484.1| DNA ligase, NAD-dependent [Brucella canis ATCC 23365] gi|163674398|gb|ABY38509.1| DNA ligase, NAD-dependent [Brucella suis ATCC 23445] gi|189020119|gb|ACD72841.1| DNA ligase [Brucella abortus S19] gi|225617876|gb|EEH14921.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo] gi|255999999|gb|ACU48398.1| DNA ligase [Brucella microti CCM 4915] gi|260095906|gb|EEW79783.1| DNA ligase [Brucella abortus NCTC 8038] gi|260155592|gb|EEW90672.1| DNA ligase [Brucella suis bv. 4 str. 40] gi|260668679|gb|EEX55619.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292] gi|260672619|gb|EEX59440.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59] gi|260675250|gb|EEX62071.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870] gi|260873682|gb|EEX80751.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68] gi|260916010|gb|EEX82871.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya] gi|261297256|gb|EEY00753.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94] gi|261304621|gb|EEY08118.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10] gi|261738582|gb|EEY26578.1| DNA ligase [Brucella sp. F5/99] gi|261745124|gb|EEY33050.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686] gi|262553151|gb|EEZ08985.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1] gi|262766428|gb|EEZ12217.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str. Ether] gi|264661261|gb|EEZ31522.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1] gi|297175869|gb|EFH35216.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196] Length = 719 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 335/724 (46%), Positives = 474/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|254702142|ref|ZP_05163970.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513] gi|261752711|ref|ZP_05996420.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513] gi|261742464|gb|EEY30390.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513] Length = 719 Score = 843 bits (2177), Expect = 0.0, Method: Composition-based stats. Identities = 335/724 (46%), Positives = 473/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTVGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|225852902|ref|YP_002733135.1| NAD-dependent DNA ligase LigA [Brucella melitensis ATCC 23457] gi|256263616|ref|ZP_05466148.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9] gi|254781270|sp|C0RE59|DNLJ_BRUMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|225641267|gb|ACO01181.1| DNA ligase, NAD-dependent [Brucella melitensis ATCC 23457] gi|263093668|gb|EEZ17673.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9] gi|326409444|gb|ADZ66509.1| NAD-dependent DNA ligase LigA [Brucella melitensis M28] gi|326539150|gb|ADZ87365.1| DNA ligase, NAD-dependent [Brucella melitensis M5-90] Length = 719 Score = 843 bits (2177), Expect = 0.0, Method: Composition-based stats. Identities = 335/724 (46%), Positives = 474/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|256255361|ref|ZP_05460897.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94] gi|261222562|ref|ZP_05936843.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94] gi|260921146|gb|EEX87799.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94] Length = 719 Score = 843 bits (2177), Expect = 0.0, Method: Composition-based stats. Identities = 334/724 (46%), Positives = 473/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ + RF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVCRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|17986872|ref|NP_539506.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. 16M] gi|256045051|ref|ZP_05447952.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. Rev.1] gi|260565350|ref|ZP_05835834.1| DNA ligase [Brucella melitensis bv. 1 str. 16M] gi|265991477|ref|ZP_06104034.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. Rev.1] gi|81852173|sp|Q8YI56|DNLJ_BRUME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|17982511|gb|AAL51770.1| nad-dependent DNA ligase [Brucella melitensis bv. 1 str. 16M] gi|260151418|gb|EEW86512.1| DNA ligase [Brucella melitensis bv. 1 str. 16M] gi|263002261|gb|EEZ14836.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. Rev.1] Length = 719 Score = 843 bits (2177), Expect = 0.0, Method: Composition-based stats. Identities = 336/724 (46%), Positives = 475/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEMNLS-LFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G L+ V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALAIFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFKKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|316933200|ref|YP_004108182.1| NAD-dependent DNA ligase [Rhodopseudomonas palustris DX-1] gi|315600914|gb|ADU43449.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris DX-1] Length = 715 Score = 842 bits (2176), Expect = 0.0, Method: Composition-based stats. Identities = 307/728 (42%), Positives = 453/728 (62%), Gaps = 27/728 (3%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 +KK I L+ +A+ EL L I HD YYQ P I D++YDAL+RR +AI Sbjct: 3 VKKNPAPDIATLTKAKAKVELMRLRLVIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQ 62 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP+L + P +G KV H++P LSL + +++ +F R+ RF + Sbjct: 63 KFPELV---SASSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKL 119 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 D +I EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L Sbjct: 120 DDVPAI--VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGK 177 Query: 181 -IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNF 238 IP E+RGEVY+ K DFLALN G +ANPRN+A+G LR+ + +R L F Sbjct: 178 HIPAACELRGEVYMLKQDFLALNKRQEEAGETVFANPRNSAAGSLRQKDVAVTASRPLKF 237 Query: 239 FVHGLGKTSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 F + G+ S+ + Q++MLQ + +GF VN +R +T I+++Y E+ R++LP Sbjct: 238 FAYAWGEMSDYPMEEPTQHKMLQWLDHVGFVVNPLIRPCHTVEEILAFYREIGEQRASLP 297 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 YDIDG+VYKVD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG +TPVA Sbjct: 298 YDIDGVVYKVDRLDYQERLGFISRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVA 357 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 RL+PV +GG ++ NATLHNEDYIKG+ G +R G DIR GD V+V+RAG+VIP++V + Sbjct: 358 RLQPVTVGGVVVQNATLHNEDYIKGIGNDGSPLRDGVDIREGDTVVVQRAGDVIPQIVSV 417 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 ++++R A+P+ FP CP+C S VR+ A RCTG L C AQ +ERLKHFV Sbjct: 418 VLDKRPAGAEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFV 471 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR AF+I+GLG++Q++ F + ++ PADIFTL+ R + K+E + G+G+ SV Sbjct: 472 SRLAFDIDGLGEKQIELFHER----GWVQEPADIFTLKARN--AELKLEQLEGYGETSVR 525 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD-- 594 NL+ +I+ RR I L R +F+LGIRHVG A+ LA++Y + F + ++ Sbjct: 526 NLFAAIDARRTIELHRLVFALGIRHVGEGNAKLLARHYGTLDAFLTAMRAAADAQTEEGN 585 Query: 595 ----WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENK 650 + L + +GD++A+A+VEF+ RN+ A++ALL E++ + + + + K Sbjct: 586 TSEAYQDLDNIAGIGDVVAEAVVEFFAEERNVKALDALLAELTEVLPAEQARRDTAVAGK 645 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +VFTG+L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ Sbjct: 646 TVVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLT 705 Query: 711 EEQFLFLL 718 E+++L L+ Sbjct: 706 EDEWLALI 713 >gi|148560656|ref|YP_001259312.1| NAD-dependent DNA ligase LigA [Brucella ovis ATCC 25840] gi|166215401|sp|A5VRG5|DNLJ_BRUO2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148371913|gb|ABQ61892.1| DNA ligase, NAD-dependent [Brucella ovis ATCC 25840] Length = 719 Score = 842 bits (2176), Expect = 0.0, Method: Composition-based stats. Identities = 334/724 (46%), Positives = 473/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPVDTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|75675255|ref|YP_317676.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255] gi|123773282|sp|Q3STR7|DNLJ_NITWN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|74420125|gb|ABA04324.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255] Length = 716 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 310/726 (42%), Positives = 459/726 (63%), Gaps = 22/726 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + P+++L+ QAR E L EI H++ YYQ P + D+ YDAL+RR +AI Sbjct: 4 KSKTPPPVDSLTRSQARVEHKRLALEIETHNERYYQQDAPTVSDATYDALQRRLEAIEAR 63 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FPDL + + P +G KV H++P LSL ++ ++ +F+ RI RF + Sbjct: 64 FPDLVTA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDAEVAEFVERIRRFLKLG 120 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 D+ EPKIDG +++RYE G V AA RGDG +GEDV+A +R I +P L N Sbjct: 121 ADDMPAIVAEPKIDGLSLSLRYENGDLVRAATRGDGFTGEDVTANVRTIADVPHKLNGHN 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IP E+RGEVY+ K DFLALN + G +ANPRN+A+G LR+ + + +R L FF Sbjct: 181 IPTACELRGEVYMLKEDFLALNKKQQEAGDTVFANPRNSAAGSLRQKDVSITASRPLKFF 240 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ ++ A+ Q +ML+ +R +GF VN ++ ++ ++++Y + R+TL YDI Sbjct: 241 AYAWGEMTDRPAETQNDMLEWLRDVGFIVNPLIQLCHSVDEVLAFYRRIGEQRATLGYDI 300 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +RSPRW I+HKFA +QA T L IDIQ+GRTG +TPVARLE Sbjct: 301 DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQAMTILRGIDIQVGRTGAMTPVARLE 360 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ NATLHNEDYI+GL G+ +R G D+R+GD V+V+RAG+VIP+VV +I+ Sbjct: 361 PVTVGGVVVQNATLHNEDYIRGLGNDGQPIRDGIDLRIGDTVVVQRAGDVIPQVVSVIIE 420 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R +A+ + FP CPIC S VR+ A RCTG L C AQ +ERLKHFVSR Sbjct: 421 KRPANAKRYEFPDRCPICGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRL 474 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG++Q+ F+ + P DIFTLQ R + K+ + G+GDVSV NL+ Sbjct: 475 AFDIDGLGEKQIQEFYDD----GLVMHPVDIFTLQERDARAENKLRDRDGYGDVSVRNLF 530 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH------NND 593 +I+ RR I L R IF+LGIRHVG A+ LA++Y S ++F + A +++ Sbjct: 531 AAIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGSIESFRSAMTEAAAAQTEAGNDSE 590 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 + L + +GDI+A A+VEF+ PRN+ A+ LL+E+ + + S + K +V Sbjct: 591 AYADLTNIGGIGDIVADAVVEFFAEPRNVKALNDLLEEIEV-LPVAQARSDSAVAGKTVV 649 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTG+L+K R +A+ ++GA S+ +S+KTD+++ G GSKL+ A++ GVK+++E++ Sbjct: 650 FTGSLEKFTRDEAKASAERVGAKTSSSVSKKTDLVVAGPGAGSKLKDAEKFGVKVISEDE 709 Query: 714 FLFLLQ 719 +L L++ Sbjct: 710 WLKLIE 715 >gi|323136604|ref|ZP_08071685.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242] gi|322397921|gb|EFY00442.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242] Length = 705 Score = 841 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 299/719 (41%), Positives = 464/719 (64%), Gaps = 24/719 (3%) Query: 1 MKKR---QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDA 57 M K+ + + ++ LS +AR E + L ++I+ +D+ YY+ P++ D+EYDA +RR +A Sbjct: 1 MTKKPASRPLSVDELSPAEARAEHARLGEDIARYDEAYYREDAPLVPDAEYDAARRRYEA 60 Query: 58 IAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRF 117 + AFP+L P K+G + + KV H++P LSL +++ E++ F+ R+ RF Sbjct: 61 LEKAFPELV---TPESLTRKVGAKPSEKFAKVKHAVPMLSLGNVFSDEEVFDFVARVRRF 117 Query: 118 WQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL 177 + + FT EPKIDG ++RYE G+ AA RGDG+ GEDV+A IR + IP L Sbjct: 118 LGLGERARLAFTAEPKIDGLSCSLRYEGGRLAQAATRGDGYEGEDVTANIRTLREIPHKL 177 Query: 178 SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYL 236 + P+++EVRGEVY++ DF ALN+ A G+ P+ANPRNAA+G LR+L+P R L Sbjct: 178 HGDAPDVLEVRGEVYMTHADFAALNERQTAAGKPPFANPRNAAAGSLRQLDPKITAGRPL 237 Query: 237 NFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLP 296 +FF +G G+ SE+ + Q+ +L+ LG VN R + ++++Y +++ R+TL Sbjct: 238 HFFAYGWGEASELPGETQWSVLEAFGRLGLKVNPLTRLCDGAEEMLAHYRAIEARRATLG 297 Query: 297 YDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVA 356 YDIDG+VYKVD+ SLQ++LG +R+PRW +HKF ++A+T L DI+IQ+GRTG LTPVA Sbjct: 298 YDIDGVVYKVDDISLQERLGFVSRAPRWAAAHKFPAERATTILRDIEIQVGRTGALTPVA 357 Query: 357 RLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDI 416 RLEPV +GG +++NATLHNED I +DIRVGD V+V+RAG+VIP++V++ Sbjct: 358 RLEPVTVGGVVVSNATLHNEDEIAR-----------KDIRVGDTVVVQRAGDVIPQIVEV 406 Query: 417 IVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFV 476 + +R A+P+ FP CP C S +R+++ KTG+ RCTG L C AQ +ERLKHF Sbjct: 407 VTEKRPHGAKPYHFPHVCPRCGSAALREIDEKTGEADVVRRCTGSLVCPAQAVERLKHFA 466 Query: 477 SRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVT 536 SR+AF+IEGLG +Q+++F+ I+ +DIFTL+ R + S TKI+N GFG+ SV Sbjct: 467 SRNAFDIEGLGDRQIEYFYDE----GLIKTASDIFTLEERDRASLTKIKNREGFGETSVR 522 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL+ +I RR I + RF+++LGIRHVG AR LA+++ +++ + + Sbjct: 523 NLFAAIEARRTIPINRFLYALGIRHVGETNARRLARHFGDFESLRETAREADPGT-EARA 581 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 + + VG ++A+A+ +F+ P N ++ALL +V+ E SS + K +VFTG Sbjct: 582 RIDSIDGVGPVVAEALHDFFAEPHNEKELDALLSQVTLE-PMPEIASSSPVAGKTVVFTG 640 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 L+++ R +A+ + GA V+A +S+KTD+++ G GSKL KAQ+LG+++++E+++ Sbjct: 641 ALERLTRDEAKAQAERFGAKVAASVSKKTDLVVAGPGAGSKLAKAQELGIEVISEDEWF 699 >gi|256061478|ref|ZP_05451622.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33] gi|261325484|ref|ZP_05964681.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33] gi|261301464|gb|EEY04961.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33] Length = 719 Score = 841 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 334/724 (46%), Positives = 472/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY+ K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMVKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +ED A IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDSALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|192292401|ref|YP_001993006.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1] gi|254781404|sp|B3QFL8|DNLJ_RHOPT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|192286150|gb|ACF02531.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1] Length = 715 Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 305/727 (41%), Positives = 448/727 (61%), Gaps = 27/727 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + I L+ +A+ EL L EI HD YYQ P I D++YDAL+RR +AI Sbjct: 4 KTKPAPDIATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQK 63 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L + + P +G KV H++P LSL + +++ +F+ R+ RF + Sbjct: 64 FPELVNA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFVERVQRFLRLD 120 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 D +I EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L Sbjct: 121 DVPAI--VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKH 178 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNP-TDITRYLNFF 239 IP E+RGEVY+ K DFLALN G +ANPRN+A+G LR+ + +R L FF Sbjct: 179 IPAACELRGEVYMLKQDFLALNKRQEEAGETVFANPRNSAAGSLRQKDVLVTASRPLKFF 238 Query: 240 VHGLGKTSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + G+ S Q++MLQ + GF VN + ++ +++Y + R++LPY Sbjct: 239 AYAWGEMSTYPMDEPTQHKMLQWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPY 298 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKVD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG LTPVAR Sbjct: 299 DIDGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVAR 358 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L+PV +GG ++ NATLHNEDYI+G+ G+ +R G DIR GD V+V+RAG+VIP++V ++ Sbjct: 359 LQPVTVGGVVVQNATLHNEDYIRGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVV 418 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R A+P+ FP CP+C S VR+ A RCTG L C AQ +ERLKHFVS Sbjct: 419 MQKRPAGAEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFVS 472 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R AF+I+GLG++Q++ F + ++ PADIFTL+ R K+E + G+G+ SV N Sbjct: 473 RLAFDIDGLGEKQIELFHER----GWVQEPADIFTLKARNDQ--LKLEQLEGYGETSVRN 526 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--- 594 L+ +I+ RR I L R IF+LGIRHVG A+ LA++Y + F + ++ Sbjct: 527 LFAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNT 586 Query: 595 ---WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 + L + +GD++A+A+VEF+ RNI A++ALL E++ + + + + K Sbjct: 587 SEAYQDLDNIAGIGDVVAEAVVEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKT 646 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +VFTG+L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ E Sbjct: 647 VVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTE 706 Query: 712 EQFLFLL 718 +++L L+ Sbjct: 707 DEWLALI 713 >gi|254714455|ref|ZP_05176266.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1] gi|254717353|ref|ZP_05179164.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1] gi|261219183|ref|ZP_05933464.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1] gi|261322244|ref|ZP_05961441.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1] gi|260924272|gb|EEX90840.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1] gi|261294934|gb|EEX98430.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1] Length = 719 Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 333/724 (45%), Positives = 474/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GFPVN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF +QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG S+ LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSMKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596 RR I+L RF+F LGIR+VG A+ LA+ YLSY F + + ++ W Sbjct: 535 RREIALHRFLFGLGIRYVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|92116846|ref|YP_576575.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14] gi|123083742|sp|Q1QNT2|DNLJ_NITHX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91799740|gb|ABE62115.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14] Length = 714 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 314/726 (43%), Positives = 460/726 (63%), Gaps = 24/726 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + P+++L+ QA+ E L EI H++ YYQ P + D+ YDAL++R +AI Sbjct: 4 KPKTPPPVDSLTRAQAKIEHKRLALEIETHNERYYQKDAPTVSDAAYDALRQRLEAIEAR 63 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FPDL + N P +G KV H++P LSL ++ E++ +F+ RI RF + Sbjct: 64 FPDLITA---NSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDEEVAEFVERIQRFLKLG 120 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180 D+ EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L N Sbjct: 121 PDDIPAIVAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPHNLRGRN 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239 IP E+RGEVY+ K DFLALN + G +ANPRN+A+G LR+ + +R L FF Sbjct: 181 IPTACELRGEVYMLKTDFLALNKKQEDAGDTVFANPRNSAAGSLRQKDVAITASRPLKFF 240 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ ++ A Q++ML+ ++ +GF VN + N+ ++ +Y ++ R++L YDI Sbjct: 241 AYAWGEMTDRPADTQHDMLEWLKDVGFKVNPLIELCNSVEKVLKFYRKIGEQRASLGYDI 300 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG +TPVARLE Sbjct: 301 DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQATTILKGIDIQVGRTGAMTPVARLE 360 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV IGG ++ NATLHNEDYIKG+ G+ +R G D+RVGD V+V+RAG+VIP+VV ++++ Sbjct: 361 PVTIGGVVVQNATLHNEDYIKGIGNDGQPIRDGVDLRVGDTVVVQRAGDVIPQVVSVVID 420 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R AQP++FP CPIC S VR+ A RCTG L C AQ +ERLKHFVSR Sbjct: 421 KRPNSAQPYAFPHTCPICGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRL 474 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG++Q+ F + I+ PADIFTL+ R K+E + GFG+VSV NL+ Sbjct: 475 AFDIDGLGEKQIQEFHER----GWIKEPADIFTLRERN--PKIKLEELEGFGEVSVRNLF 528 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----- 594 +I+ RR I L R IF+LGIRHVG A+ LA++Y F ++ A DD Sbjct: 529 AAIDARRTIELNRLIFALGIRHVGEGNAKLLARHYGGIDAFRAAMSEAAAAQTDDGNASE 588 Query: 595 -WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 + L + +GDI+A A+VEF+ RN+ A+ LL+E+ + + S + K +V Sbjct: 589 AYADLNNISGIGDIVADAVVEFFAETRNVKALNDLLEEIEV-LPVAQARNDSAVAGKTVV 647 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTG+L+K R +A+ ++GA VS +S+KTD+++ G GSKL+ A++ GV++++E++ Sbjct: 648 FTGSLEKFTRDEAKASAERMGAKVSGSVSKKTDLVVAGPGAGSKLKDAEKHGVQVISEDE 707 Query: 714 FLFLLQ 719 +L L++ Sbjct: 708 WLKLIE 713 >gi|166216284|sp|Q6N423|DNLJ_RHOPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 715 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 304/727 (41%), Positives = 451/727 (62%), Gaps = 27/727 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + I L+ +A+ EL L EI HD YYQ P I D++YDAL+RR +AI Sbjct: 4 KTKPAPDIATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQK 63 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L + + P +G KV H++P LSL + +++ +F R+ RF + Sbjct: 64 FPELVNA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLD 120 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 D +I EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L Sbjct: 121 DVPAI--VAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKH 178 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IP E+RGEVY+ K DFLALN +ANPRN+A+G LR+ + T +R L FF Sbjct: 179 IPATCELRGEVYMLKQDFLALNKRQEEANETVFANPRNSAAGSLRQKDVTVTASRPLKFF 238 Query: 240 VHGLGKTSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + G+ S+ + Q++MLQ + GF VN + ++ +++Y + R++LPY Sbjct: 239 AYAWGEMSDYPMEEPTQHKMLQWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPY 298 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKVD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG +TPVAR Sbjct: 299 DIDGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVAR 358 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L+PV +GG ++ NATLHNEDYIKG+ G+ +R G DIR GD V+V+RAG+VIP++V ++ Sbjct: 359 LQPVTVGGVVVQNATLHNEDYIKGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVV 418 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R A+P+ FP CP+C S VR+ A RCTG L C AQ +ERLKHFVS Sbjct: 419 MEKRPAGAEPYHFPHKCPVCGSHAVREEGE------AVWRCTGALICPAQAVERLKHFVS 472 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R AF+I+GLG++Q++ F + ++ PADIFTL+ R + K+E + G+G+ SV N Sbjct: 473 RLAFDIDGLGEKQIELFHER----GWVQEPADIFTLKARN--AELKLEQLEGYGETSVRN 526 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD--- 594 L+ +I+ RR+I L R +F+LGIRHVG A+ LA++Y + F + ++ Sbjct: 527 LFAAIDARRSIELHRLVFALGIRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNT 586 Query: 595 ---WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 + L + +GD++A+A+VEF+ RNI A++ALL E++ + + + + K Sbjct: 587 SEAYQDLDNIAGIGDVVAEAVVEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKT 646 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +VFTG+L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ E Sbjct: 647 VVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTE 706 Query: 712 EQFLFLL 718 +++L L+ Sbjct: 707 DEWLALI 713 >gi|182677699|ref|YP_001831845.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC 9039] gi|254781257|sp|B2IGH4|DNLJ_BEII9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|182633582|gb|ACB94356.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC 9039] Length = 699 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 300/714 (42%), Positives = 453/714 (63%), Gaps = 21/714 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 PIE+LS QA++E L ++I+ HD YYQ P + D+EYDAL+RR +A+ AFP+L Sbjct: 6 PIESLSPAQAKREHRRLGEQITEHDRLYYQEDAPRVSDAEYDALRRRYEALETAFPELVS 65 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 +E KIG K+ H +P LSL I++ E++ +F+ R+ RF D + Sbjct: 66 AE---SLTKKIGAAPAEKFAKIIHKVPMLSLANIFSDEEVGEFVARVRRFLGLGADAPLA 122 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 + EPKIDG ++RYE G V AA RGDG+ GEDV+A +R I IP L + PEI+EV Sbjct: 123 ISAEPKIDGLSCSLRYEGGYLVQAATRGDGYEGEDVTANVRTIQEIPHQLQGHAPEILEV 182 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKT 246 RGEVY++ DF ALN+ A G+ +ANPRN+A+G LR+L+P R L+FF + G+ Sbjct: 183 RGEVYMTHADFAALNERQEAAGKTIFANPRNSAAGSLRQLDPKVTAGRPLHFFAYAWGEA 242 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE A Q M+ + G PVN ++ ++ ++++Y+++++ R+ L YDIDG+VYKV Sbjct: 243 SEEPADTQMGMVTAFKAFGLPVNPLMQLCHSAEDLIAHYHDIEARRALLDYDIDGVVYKV 302 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 + +LQK+LG +R+PRW +HKF ++A T L DI+IQ+GRTG LTPVARLEP+ +GG Sbjct: 303 NSIALQKRLGFVSRAPRWATAHKFPAEKAVTLLRDIEIQVGRTGALTPVARLEPITVGGV 362 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 +++NATLHNED I +DIR+GD V+++RAG+VIP+++ I+++R DAQ Sbjct: 363 VVSNATLHNEDEIAR-----------KDIRIGDMVMIQRAGDVIPQILGPILDKRPQDAQ 411 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP CP+C S +R+++PKTG RCTGGL C+AQ +ERLKHF SR+AF+IEGL Sbjct: 412 PYEFPQVCPVCGSAAIREIDPKTGTADVVRRCTGGLVCAAQVVERLKHFASRNAFDIEGL 471 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q++ F+ I P DIFTLQ R S K+++ G+G+ SV NL+ +I RR Sbjct: 472 GDKQIEQFYHD----GLIHTPVDIFTLQERDARSLKKLKDREGYGETSVRNLFQAIEARR 527 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 +I + RFI++LGIRHVG AR A+ + ++ + + + +++ L V G Sbjct: 528 HIPVNRFIYALGIRHVGETNARRAARAFGTFDAL-RAVASRAEEGSEERSELTNVEGFGP 586 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 ++A+AI +F+ N ++ LL++V+P S + K +VFTG L+ + R +A Sbjct: 587 VVAEAIFDFFHEQHNQDVLDGLLEQVTPE-PMEAVAKESPVAGKTVVFTGALEHMTREEA 645 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + +LGA V+ +S+KTD+++ G GSKL KA +L ++ ++EE +L L+ + Sbjct: 646 KAQAERLGAKVAGSVSKKTDLVVAGPGAGSKLAKAAELNIETISEEDWLKLVGE 699 >gi|294852747|ref|ZP_06793420.1| DNA ligase [Brucella sp. NVSL 07-0026] gi|294821336|gb|EFG38335.1| DNA ligase [Brucella sp. NVSL 07-0026] Length = 719 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 334/724 (46%), Positives = 472/724 (65%), Gaps = 19/724 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 I +E L+ +A EL L + I++HD+ Y+ +P I D+ YDALKRR +AI FP L Sbjct: 4 ISVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALV 63 Query: 67 RSEDPNGPLNKIGGEM-NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P ++G + V H+ P LSL+ ++ ED+R F+ +YRF + D+S Sbjct: 64 RD---DSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 I FT EPKIDG ++IRYE G V A RGDG +GE+V+A IR I IP L P ++ Sbjct: 121 IAFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY++K+DFL LN +M A G++ Y NPRN A+G LR+L+ +R L FF + G Sbjct: 181 EVRGEVYMAKSDFLTLNAQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + S++ A Q M++ R GF VN +++ N+ G++++Y + R TL YDIDG+VY Sbjct: 241 EMSDMPADTQLGMVEVFRQWGFLVNPLMKRFNSVDGLLAHYRAIGMERPTLDYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD LQ +LG R+RSPRW I+HKF QA T L IDIQ+GRTG LTPVARLEP+ +G Sbjct: 301 KVDRLDLQTRLGFRSRSPRWAIAHKFPAGQALTILRGIDIQVGRTGALTPVARLEPITVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VD+++ E Sbjct: 361 GVVVTNATLHNEDYIKGIGQKGEPIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEEGKKR 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 +P+ FP CP C S VR+ A RCTGGL C AQ +ER++HFVSR+AF+IE Sbjct: 421 GEPYQFPHVCPACGSHAVREEGE------AVRRCTGGLICPAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG++Q++FFF +EDPA IR PADIFTL++RQ+ S TK++NI GFG SV LYD+I+ Sbjct: 475 GLGEKQVEFFFNAEDPALCIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDA 534 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDWL 596 RR I+L RF+F LGIRHVG A+ LA+ YLSY F + + ++ W Sbjct: 535 RREIALHRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGSEAWQ 594 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 ++ V +G I+A+A+V+FY P N + ALL EV+P S +E K +VFTG Sbjct: 595 DMLAVEGIGSIVAEAVVDFYGEPHNREVLAALLAEVTPLDEEARVATGSPVEGKTVVFTG 654 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG++++NE+ + Sbjct: 655 SLERMSRDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFK 714 Query: 717 LLQQ 720 L+ + Sbjct: 715 LVGE 718 >gi|115524134|ref|YP_781045.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53] gi|115518081|gb|ABJ06065.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53] Length = 730 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 309/727 (42%), Positives = 452/727 (62%), Gaps = 25/727 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + + + L+ +A+ EL L EI HD YYQ P + D++YDAL+RR + I H Sbjct: 19 KSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEIEHK 78 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L P K+G KV H++P LSL ++ +++ +F+ R+ RF Sbjct: 79 FPELVSGA---SPSQKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLQRVRRFLNL- 134 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 D EPKIDG +++RYE+G+ V AA RGDG GEDV+A +R + IP L N Sbjct: 135 GDEIPAIVAEPKIDGLSLSLRYEQGELVRAATRGDGSVGEDVTANVRTLKDIPHTLKGNR 194 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239 IP E+RGEVY+ K+DFLALN + G P+ANPRN+A+G LR+ + +R L FF Sbjct: 195 IPAACELRGEVYMLKSDFLALNKKQEEAGEAPFANPRNSAAGSLRQKDVAITASRPLKFF 254 Query: 240 VHGLGKTSEIFAK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + G+ S + Q++ML + GF VN + ++ + +Y + R+ LPYD Sbjct: 255 AYAWGEFSGETPERTQHDMLGWLDHAGFVVNPEITLCHSVDDALVFYRRIGEERAALPYD 314 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD Q +LG R+PRW I+HKFA +QA+T L I+IQ+GRTG LTPVARL Sbjct: 315 IDGVVYKVDRLDWQARLGFAGRAPRWAIAHKFAAEQATTILEKIEIQVGRTGALTPVARL 374 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV +GG ++ NATLHNEDYIKG+ G+ +R GRDIRVGD V+++RAG+VIP+VVD+++ Sbjct: 375 APVTVGGVVVQNATLHNEDYIKGVGNDGQPLREGRDIRVGDTVIIQRAGDVIPQVVDVVL 434 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ++R DA P+ FP CP+C S VR+ RCTG L C AQ +ERLKHFVSR Sbjct: 435 DKRPADAVPYEFPQACPVCGSHAVREDGE------VVRRCTGALICPAQAVERLKHFVSR 488 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 AF+I+GLG++Q++ F + ++ P DIFTL+ R +T K+E + G+G+ SV NL Sbjct: 489 LAFDIDGLGEKQIELFHER----GWVKEPVDIFTLKTRN--ATLKLEELEGYGETSVRNL 542 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---- 594 + +I+ RR I L R IF+LGIRHVG A+ LA++Y + F + A ++ Sbjct: 543 FAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTIDAFLGAMRAAAAGQTEEGNTS 602 Query: 595 --WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 + L + +GDI+A+A+VEF+ RN+ A++ALL E+ + + S + K + Sbjct: 603 EAYQDLDNIGGIGDIVAEAVVEFFAEERNVEALDALLGELDEVLPAAQVKRDSAVAGKTV 662 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTG+L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA++LGV +++E+ Sbjct: 663 VFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDFVVAGEDAGSKLTKARELGVSVLSED 722 Query: 713 QFLFLLQ 719 ++L L+Q Sbjct: 723 EWLALIQ 729 >gi|166216283|sp|Q07PR9|DNLJ_RHOP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 715 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 309/727 (42%), Positives = 452/727 (62%), Gaps = 25/727 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + + + L+ +A+ EL L EI HD YYQ P + D++YDAL+RR + I H Sbjct: 4 KSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEIEHK 63 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L P K+G KV H++P LSL ++ +++ +F+ R+ RF Sbjct: 64 FPELVSGA---SPSQKVGAAPARGFAKVQHAVPMLSLGNAFSDDEVAEFLQRVRRFLNL- 119 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 D EPKIDG +++RYE+G+ V AA RGDG GEDV+A +R + IP L N Sbjct: 120 GDEIPAIVAEPKIDGLSLSLRYEQGELVRAATRGDGSVGEDVTANVRTLKDIPHTLKGNR 179 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239 IP E+RGEVY+ K+DFLALN + G P+ANPRN+A+G LR+ + +R L FF Sbjct: 180 IPAACELRGEVYMLKSDFLALNKKQEEAGEAPFANPRNSAAGSLRQKDVAITASRPLKFF 239 Query: 240 VHGLGKTSEIFAK-GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + G+ S + Q++ML + GF VN + ++ + +Y + R+ LPYD Sbjct: 240 AYAWGEFSGETPERTQHDMLGWLDHAGFVVNPEITLCHSVDDALVFYRRIGEERAALPYD 299 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD Q +LG R+PRW I+HKFA +QA+T L I+IQ+GRTG LTPVARL Sbjct: 300 IDGVVYKVDRLDWQARLGFAGRAPRWAIAHKFAAEQATTILEKIEIQVGRTGALTPVARL 359 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 PV +GG ++ NATLHNEDYIKG+ G+ +R GRDIRVGD V+++RAG+VIP+VVD+++ Sbjct: 360 APVTVGGVVVQNATLHNEDYIKGVGNDGQPLREGRDIRVGDTVIIQRAGDVIPQVVDVVL 419 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ++R DA P+ FP CP+C S VR+ RCTG L C AQ +ERLKHFVSR Sbjct: 420 DKRPADAVPYEFPQACPVCGSHAVREDGE------VVRRCTGALICPAQAVERLKHFVSR 473 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 AF+I+GLG++Q++ F + ++ P DIFTL+ R +T K+E + G+G+ SV NL Sbjct: 474 LAFDIDGLGEKQIELFHER----GWVKEPVDIFTLKTRN--ATLKLEELEGYGETSVRNL 527 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD---- 594 + +I+ RR I L R IF+LGIRHVG A+ LA++Y + F + A ++ Sbjct: 528 FAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTIDAFLGAMRAAAAGQTEEGNTS 587 Query: 595 --WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 + L + +GDI+A+A+VEF+ RN+ A++ALL E+ + + S + K + Sbjct: 588 EAYQDLDNIGGIGDIVAEAVVEFFAEERNVEALDALLGELDEVLPAAQVKRDSAVAGKTV 647 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTG+L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA++LGV +++E+ Sbjct: 648 VFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDFVVAGEDAGSKLTKARELGVSVLSED 707 Query: 713 QFLFLLQ 719 ++L L+Q Sbjct: 708 EWLALIQ 714 >gi|49475845|ref|YP_033886.1| NAD-dependent DNA ligase LigA [Bartonella henselae str. Houston-1] gi|81647763|sp|Q6G2R5|DNLJ_BARHE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49238653|emb|CAF27899.1| DNA ligase [Bartonella henselae str. Houston-1] Length = 716 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 332/719 (46%), Positives = 470/719 (65%), Gaps = 17/719 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD Y + +P I D+EYDAL+RR I FP+L R Sbjct: 6 IQNLTALEAASELEWLAKEITRHDVLYNRNDQPEISDAEYDALRRRNAEIEALFPELIR- 64 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P +KIG ++ K HS P LSL+ ++ ED+ +F+ R+ RF + + + Sbjct: 65 --PDSPSHKIGAPISEKFEKSVHSQPMLSLDNAFSSEDVSEFMERVRRFLRLPETQMLEI 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE+G+ V AA RGDG+ GE+V+A R I IP+VL P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYEQGRLVCAATRGDGYVGENVTANARTISDIPQVLQGKFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ + DF ALN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMRRADFQALNVNQQEKGKLAFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 EIFA+ Q M++K++ GF +N +++ + ++SYY++++ R L YDIDG+VYKV+ Sbjct: 243 EIFAESQMGMMEKLKEYGFVINPLIKKIKSLEELISYYHDIEERRHALSYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG +RSPRW I+HKF ++A T L IDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLMLQMRLGFVSRSPRWAIAHKFPAEKAMTVLEGIDIQVGRTGALTPVARLAPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ITNA+LHNEDYIKG+ + G+ +R G DIRVGD V+V+RAG+VIP+++DI+ +R DA Sbjct: 363 ITNASLHNEDYIKGIGSKGEPIREGNDIRVGDTVIVQRAGDVIPQIIDIVAEKRSKDASA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP C S VR++ A RCTGGL C AQ +ER++HFVSR+AF+IEGLG Sbjct: 423 FVFPYLCPACGSYAVREIGE------AVRRCTGGLICPAQAIERIRHFVSRNAFDIEGLG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 K+Q++FFF+ +D I PADIFTLQRRQ+ S +EN+ GFG VSV LYD+IN RR Sbjct: 477 KKQVEFFFQIQDETLCIHTPADIFTLQRRQEKSLVHLENMEGFGTVSVRKLYDAINARRK 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEI-------NNIIAHNNDDWLSLIR 600 I L RF+F+LGIR+VG AR LA+ Y +Y F + + N+ W+ L Sbjct: 537 IPLSRFLFALGIRYVGEVNARRLARAYQNYTAFETAAMAATMPDDKVGKEGNEAWMELTN 596 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G + +AI++FY+ N + LL EV+P SS I K +VFTGTL + Sbjct: 597 IEGIGPQVGEAIIDFYKEVHNREVLSGLLCEVTPLDEESVMTASSPIAGKIIVFTGTLTR 656 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + R +A+ +LGA S LS+KT++++ G GSKL KAQ+LGV++++EE +L L++ Sbjct: 657 MSRDEAKALAERLGAKTSGSLSKKTNLLVAGVGGGSKLTKAQELGVEVIDEEAWLQLIE 715 >gi|163868703|ref|YP_001609915.1| NAD-dependent DNA ligase LigA [Bartonella tribocorum CIP 105476] gi|190359235|sp|A9IW95|DNLJ_BART1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161018362|emb|CAK01920.1| DNA ligase [Bartonella tribocorum CIP 105476] Length = 719 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 337/723 (46%), Positives = 472/723 (65%), Gaps = 17/723 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L++ +A +EL L +EI+ HD Y + +P I D+EYDAL+RR I FP+L R Sbjct: 6 IKNLTVVEAERELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRV 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P +KIG ++ K H+ P LSL+ ++ ED+ +F+ RI RF + + + Sbjct: 66 ---DSPSHKIGAAISEKFEKSVHAQPMLSLDNAFSAEDVYEFVERIRRFLRLPETQVLEI 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYEKG+ V AA RGDG GE+V+A R I IP+VL + P++IEVR Sbjct: 123 TAEPKIDGLSLSLRYEKGRLVRAATRGDGTVGENVTANARTIADIPQVLQGDFPDVIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ + DF ALN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 EIFA+ Q EM+ K++ GF +N + T I+SYY +++ R +L YDIDG+VYKV+ Sbjct: 243 EIFAESQMEMMTKLKEYGFVINPLTKVFKTVEDIISYYRDIEERRYSLNYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQK+LG +RSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ IGG + Sbjct: 303 DLMLQKRLGFVSRSPRWAIAHKFPAEKAMALLEDIDIQVGRTGALTPVARLTPITIGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNA+LHNEDYIKG+ G+ +R GRDIR+GD V+++RAG+VIP+VVDI++ +R D+ Sbjct: 363 VTNASLHNEDYIKGIGHKGEPIREGRDIRIGDTVIIQRAGDVIPQVVDIVLEKRQKDSSA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP C S VR++ A RCTGGL C AQ +ER++HFV+R+AF+IEGLG Sbjct: 423 FVFPDLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVARNAFDIEGLG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 K+Q++FFF ++D A I PADIFTL+RRQ+ S ++ENI GFG VSV LYD+IN RR Sbjct: 477 KKQVEFFFHAQDEALCIHTPADIFTLERRQEKSLIRLENIEGFGTVSVRKLYDAINARRE 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII-------AHNNDDWLSLIR 600 I L RF+F+LGIRHVG AR LA+ Y +Y F + N+ W+ L Sbjct: 537 IPLSRFLFALGIRHVGEVNARRLARAYQTYTAFETAAMEALMPCKQDNKEGNEAWMELTN 596 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G + AIV+FYQ N + LL+E++P SS I K +VFTGTL Sbjct: 597 IEGIGPQVGSAIVDFYQEAHNREVLAVLLEEITPLDEVPIMTASSPIAEKIIVFTGTLAH 656 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R +A+ +LGA S LS+KTD+++ G GSKL KAQ+ GV++++EE ++ L++ Sbjct: 657 MSRDEAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLTKAQEFGVQVIDEEAWMRLIKG 716 Query: 721 YNT 723 +N Sbjct: 717 HNI 719 >gi|240850882|ref|YP_002972282.1| DNA ligase [Bartonella grahamii as4aup] gi|240268005|gb|ACS51593.1| DNA ligase [Bartonella grahamii as4aup] Length = 719 Score = 831 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 338/722 (46%), Positives = 472/722 (65%), Gaps = 17/722 (2%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 + L+ +A EL L +EI+ HD Y + +P I D+EYDAL+RR I FP+L R Sbjct: 7 KNLTAVEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRV- 65 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P +KIG ++ K H+ P LSL+ ++ ED+ +F+ RI RF + + + T Sbjct: 66 --DSPSHKIGAPISEKFEKSVHAQPMLSLDNAFSSEDVTEFVERIRRFLRLPETQVLEIT 123 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRG 189 EPKIDG +++RYEKG+ V AA RGDG GE+V+A R I IP+VL + P+IIEVRG Sbjct: 124 AEPKIDGLSLSLRYEKGRLVGAATRGDGTVGENVTANARTIADIPQVLQGDFPDIIEVRG 183 Query: 190 EVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE 248 EVY+ + DF ALN G+ +ANPRNAA+G LR+L+ +R L FF + G+ SE Sbjct: 184 EVYMGREDFQALNISQQEKGKLTFANPRNAAAGSLRQLDSRITASRKLQFFAYACGEVSE 243 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 I A+ Q EM++K++ GF +N + T I+SYY++++ R +L YDIDG+VYKV++ Sbjct: 244 ILAESQMEMMKKLKEYGFVINPLTKAFKTLEEIISYYHDIEECRHSLSYDIDGIVYKVND 303 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQK+LG +RSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ +GG ++ Sbjct: 304 LMLQKRLGFVSRSPRWAIAHKFPAEKAIALLKDIDIQVGRTGALTPVARLTPITVGGVVV 363 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 TNA+LHNEDYIKG+ G+ +R GRDIRVGD V+V+RAG+VIP+V+D+I+ +R DA F Sbjct: 364 TNASLHNEDYIKGIGHKGEPIREGRDIRVGDSVIVQRAGDVIPQVIDVIIEKRPKDAAVF 423 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP CP C S VR++ A RCTGGL C AQ +ER++HFV+R+AF+IEGLGK Sbjct: 424 IFPHLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVARNAFDIEGLGK 477 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 +Q++FFF ++D A I PADIFTL+RRQ+ S ++ENI GFG VSV LYD+IN RR I Sbjct: 478 KQVEFFFYAQDEALCIHTPADIFTLERRQEKSLIRLENIEGFGTVSVRKLYDAINARREI 537 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE-------INNIIAHNNDDWLSLIRV 601 L RF+F+LGIRHVG AR LA+ Y +Y F + N+ W+ L + Sbjct: 538 PLSRFLFALGIRHVGEVNARRLARTYKNYTAFETTAMGALMPCDKANEKGNEAWMELTNI 597 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G + AIV+FYQ N + LL+EV+P SS I K +VFTGTL + Sbjct: 598 EGIGPQVGSAIVDFYQEAHNREVLSVLLEEVTPLDEEPITTASSPIAEKTIVFTGTLAHM 657 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+ +LGA S LS+KTD+++ G GSKL KA++LGV++++EE +L L++++ Sbjct: 658 SRDEAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLAKAEELGVEVIDEETWLQLIEEH 717 Query: 722 NT 723 + Sbjct: 718 DV 719 >gi|49474446|ref|YP_032488.1| NAD-dependent DNA ligase LigA [Bartonella quintana str. Toulouse] gi|81646941|sp|Q6FZ81|DNLJ_BARQU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49239950|emb|CAF26355.1| DNA ligase [Bartonella quintana str. Toulouse] Length = 719 Score = 831 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 338/727 (46%), Positives = 471/727 (64%), Gaps = 20/727 (2%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M K + I+ L+ +A EL L +EI+ HD Y + +P I D+EYDAL+RR I Sbjct: 1 MNKDE---IKNLTALEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEA 57 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP+L RS + P +KIG ++ K H+ LSL+ ++ ED+ +FI RI RF + Sbjct: 58 LFPELIRS---DSPSHKIGAPVSEKFEKSVHAQAMLSLDNAFSSEDICEFIVRIRRFLRL 114 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + T EPKIDG +++RYEKG+ V AA RGDG+ GE+V+A R I IP+VL Sbjct: 115 PATQILEMTAEPKIDGLSLSLRYEKGRLVCAATRGDGYIGENVTANARTISDIPKVLRGE 174 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P+IIEVRGEVY+ + +F ALN G+ +ANPRNAA+G LR+L+P +R L+FF Sbjct: 175 FPDIIEVRGEVYMRRENFQALNMSQQEKGKFVFANPRNAAAGSLRQLDPRITASRKLHFF 234 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ SE FA Q EM++K++ GF +N + T I+SYY++++ R +L YDI Sbjct: 235 AYACGEVSETFAASQMEMMKKLKEYGFFINPLTKSFKTLEEIISYYHDIEECRHSLSYDI 294 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKV++ LQ +LG +RSPRW ++HKF ++A L IDIQ+GRTG LTPVARL Sbjct: 295 DGIVYKVNDLKLQMRLGFVSRSPRWAVAHKFPAEKAMALLEGIDIQVGRTGALTPVARLA 354 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 P+ IGG ++TNA+LHNEDYIKG+ G+ +R GRDIRVGD V+V+RAG+VIP++VDII Sbjct: 355 PITIGGVVVTNASLHNEDYIKGIGHKGESIREGRDIRVGDTVIVQRAGDVIPQIVDIIAE 414 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R A F FP CP C S VR++ + RCTGGL C AQ +ER++HFVSR+ Sbjct: 415 KRPKGASAFVFPHLCPACGSHAVREVGE------SVRRCTGGLICPAQAIERIRHFVSRN 468 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+IEGLGK+Q++FFF +D A I PADIFTLQRRQ+ + ++EN+ GFG VSV LY Sbjct: 469 AFDIEGLGKKQVEFFFHIQDEALCIHTPADIFTLQRRQEKALVRLENMEGFGTVSVRKLY 528 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA-------QEINNIIAHNN 592 ++IN RR + L RF+F+LGIRH+G AR LA Y +Y F + + N Sbjct: 529 NAINMRRKVPLSRFLFALGIRHIGEVNARRLAHAYQNYTAFETVAMAATMPYDKVGEEGN 588 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKL 652 + WL L + +G + +AI++FYQ N + ALL+EV+P + SS I K + Sbjct: 589 EAWLELTNIEGIGPQVGEAIIDFYQEAHNREVLAALLREVTPLDEENVMTASSPIAGKTI 648 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 VFTGTL ++ R +A+ +LGA S LS+KTD+++ G GSKL KAQ LGV++++EE Sbjct: 649 VFTGTLARMSRDEAKALAERLGAKTSGSLSKKTDLLVAGSAVGSKLAKAQGLGVEVIDEE 708 Query: 713 QFLFLLQ 719 +L L++ Sbjct: 709 AWLQLIE 715 >gi|153009084|ref|YP_001370299.1| NAD-dependent DNA ligase LigA [Ochrobactrum anthropi ATCC 49188] gi|166216221|sp|A6WZR6|DNLJ_OCHA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|151560972|gb|ABS14470.1| DNA ligase, NAD-dependent [Ochrobactrum anthropi ATCC 49188] Length = 721 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 334/727 (45%), Positives = 472/727 (64%), Gaps = 21/727 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P+E L+ +A EL L +EI++HD+ Y+ +P I D+EYDALKRR DAI FP L Sbjct: 4 TPVEKLTEPEAVSELERLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLV 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R+ + P ++G +V H+ P LSL ++ +D+R F+ +YRF DNSI Sbjct: 64 RT---DSPSLRVGTAPVSKFAQVVHARPMLSLGNAFSDDDVRDFVGSVYRFLGPLPDNSI 120 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG ++IRYE G + A RGDG +GE+V+ IR I IP L P ++E Sbjct: 121 AFTAEPKIDGLSMSIRYENGILISGATRGDGTTGENVTTNIRTIAEIPNRLPAGAPSVVE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY++K+DFLALN++M A G++ Y NPRN A+G LR+L+ +R L FF + G+ Sbjct: 181 VRGEVYMAKSDFLALNEQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGE 240 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S++ A Q M++ R GFPVN ++ + ++++Y + R+ L YDIDG+VYK Sbjct: 241 MSDMPADTQMGMVEIFREWGFPVNPLTKRLHGADELLAHYRAIGLERAQLDYDIDGVVYK 300 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD LQ +LG R+RSPRW I+HKF +QA+T L IDIQ+GRTG LTPVARLEP+ +GG Sbjct: 301 VDRLDLQTRLGFRSRSPRWAIAHKFPAEQATTILRGIDIQVGRTGALTPVARLEPITVGG 360 Query: 366 ALITNATLHNEDYIKGLDASGKVMR-GGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 ++TNATLHNEDYIKG+ G+ +R DIRVGD V+V+RAG+VIP++VD+++ +R D Sbjct: 361 VVVTNATLHNEDYIKGIGLKGERIRADEHDIRVGDTVIVQRAGDVIPQIVDVVLEKRKAD 420 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A PF FP CP+C S VR+ A +RCTGGL C+AQ +ER++HFVSR+AF+IE Sbjct: 421 ATPFVFPHECPVCHSHAVREEGE------AVYRCTGGLTCAAQAVERIRHFVSRNAFDIE 474 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGDVSVTNLYDSIN 543 GLG++Q++FFF +ED I+ PADIFTLQ+RQ S K+ENI GFG SV LYD+IN Sbjct: 475 GLGEKQVEFFFHAEDDKLKIKSPADIFTLQQRQAESPLKKLENIEGFGATSVKKLYDAIN 534 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII--------AHNNDDW 595 RR I+L RF+F LGIRHVG A+ A+ YLSY F + + N+ W Sbjct: 535 DRREIALHRFLFGLGIRHVGEVNAKRFARAYLSYAAFEEAALEAVPPKEGDRTDKGNEAW 594 Query: 596 LSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVF 654 LI V +G I+A+A+V+FY P N ++ L K V+P + S +E K +VF Sbjct: 595 QELIAVEGIGSIVAEAVVDFYAEPHNREVLDNLFKAGVTPVDEVALVSTGSPVEGKTVVF 654 Query: 655 TGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714 TG+L+++ R +A+ + GA + +S+KTD+++ G GSKL KA +LG+++++E+ + Sbjct: 655 TGSLERMSRDEAKAMAERYGAKTAGSVSKKTDLVVAGPGAGSKLAKASELGIEVIDEDAW 714 Query: 715 LFLLQQY 721 L+ + Sbjct: 715 FTLVGEE 721 >gi|85714986|ref|ZP_01045971.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A] gi|85698183|gb|EAQ36055.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A] Length = 705 Score = 829 bits (2142), Expect = 0.0, Method: Composition-based stats. Identities = 306/726 (42%), Positives = 450/726 (61%), Gaps = 33/726 (4%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + P+++L+ QAR E L EI H++ YYQ P + D+ YDA++RR +AI Sbjct: 4 KSKVPPPVDSLTRSQARVEHKRLVLEIEAHNERYYQQDAPTVSDAAYDAMQRRLEAIEAR 63 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FPDL + + P +G KV H++P LSL ++ ++ +F+ RI RF + Sbjct: 64 FPDLVTA---SSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDAEVAEFVERIRRFLKLG 120 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180 D+ EPKIDG +++RYE G+ V AA RGDG +GEDV+A +R I +P L + Sbjct: 121 ADDIPAIVAEPKIDGLSLSLRYEHGELVRAATRGDGFTGEDVTANVRTIRDVPHTLRGRD 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239 IP E+RGEVY+ K DFLALN + A G +ANPRN+A+G LR+ + +R L FF Sbjct: 181 IPAACELRGEVYMLKEDFLALNKKQEAAGDTVFANPRNSAAGSLRQKDVAITASRPLKFF 240 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ ++ A+ Q++ML+ +R +GF VN + ++ ++ +Y + R+TL YDI Sbjct: 241 AYAWGEMTDRPAETQHDMLKWLRDVGFMVNPLIELCSSVEQVLQFYRRIGEQRATLGYDI 300 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +RSPRW I+HKFA +QA T L IDIQ+GRTG +TPVARLE Sbjct: 301 DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQAMTILRGIDIQVGRTGAMTPVARLE 360 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ NATLHNED I +DI VGD V+V+RAG+VIP+VV +I+ Sbjct: 361 PVTVGGVVVQNATLHNEDEITR-----------KDIHVGDTVVVQRAGDVIPQVVSVIIG 409 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R +AQP+ FP CP+C S VR+ A RCTG L C AQ +ERLKHFVSR Sbjct: 410 KRPRNAQPYVFPHKCPVCGSHAVREEGE------AVRRCTGTLICPAQAVERLKHFVSRL 463 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG++Q+ F+ I P DIFTLQ+R +T K+ + G+GDVSV NL+ Sbjct: 464 AFDIDGLGEKQIQEFYDD----GLIMHPVDIFTLQKRDARATKKLRDREGYGDVSVRNLF 519 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----- 594 +I+ RR I L R IF+LGIRHVG A+ LA++Y +NF + D+ Sbjct: 520 AAIDARRKIELNRLIFALGIRHVGEGNAKLLARHYGGIENFRSAMAEAAGAQTDEGNASE 579 Query: 595 -WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 + L + +G+I+A A+VEF+ PRN+ A+ LL+E+ + + S + K +V Sbjct: 580 AYADLNNIGGIGEIVANAVVEFFAEPRNVKALNDLLEEIEV-LPVAQTRSDSAVAGKTVV 638 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTG+L+K R +A+ ++GA VS +S+KTD+++ G GSKL+ A++ GV++++E++ Sbjct: 639 FTGSLEKFTRDEAKASAERMGARVSGSVSKKTDLVVAGPGAGSKLKDAEKFGVRVISEDE 698 Query: 714 FLFLLQ 719 +L L++ Sbjct: 699 WLKLIE 704 >gi|83942325|ref|ZP_00954786.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36] gi|83846418|gb|EAP84294.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36] Length = 706 Score = 828 bits (2139), Expect = 0.0, Method: Composition-based stats. Identities = 296/714 (41%), Positives = 434/714 (60%), Gaps = 15/714 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 ++ LS E+A+ EL+ L + + Y+ P + D+EYD LKRR AI FP L Sbjct: 5 TALQELSEEEAKAELARLADLLGRANTAYHTQDAPDLSDAEYDRLKRRNQAIEERFPGLK 64 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R+ + P +K+G KV H + LSL + ED+ F RI ++ + Sbjct: 65 RA---DSPSDKVGATPAEGFGKVRHDVAMLSLGNAFEDEDVVDFDARIRKYLGLPSGTPL 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG +++RYE G+ V AA RGDG GE+V+A R I TIP + P ++E Sbjct: 122 AFTAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDTIPTRIK-GAPALLE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245 VRGEVY+ +DF ALN A G K +ANPRNAA+G LR+L+P R L FF + G Sbjct: 181 VRGEVYMRHDDFDALNARQTANGGKTFANPRNAAAGSLRQLDPEITRARPLAFFAYAWGA 240 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A+ Q++ +++++ GF N + ++++Y +++ R+TL YDIDG+VYK Sbjct: 241 LSAPLAESQFQAIERLKAFGFDTNPLTTLCDGPQEMIAHYRKIEEQRATLGYDIDGVVYK 300 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ LQ +LG R+ +PRW I+HKF + A TRL DI IQ+GRTG L+PVARL PV +GG Sbjct: 301 VNDLGLQDRLGFRSTTPRWAIAHKFPAELAWTRLEDITIQVGRTGALSPVARLHPVTVGG 360 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYIKGLD+ G +R G+DIRVGD V V RAG+VIPK+ D+ + +R DA Sbjct: 361 VVVSNATLHNEDYIKGLDSKGARIREGKDIRVGDWVQVYRAGDVIPKIADVDLGKRPEDA 420 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + + +P+ CP C S +R+ + A RCTGGL C AQ +E+LKHFVSR AF+I+G Sbjct: 421 RAYVYPTTCPECGSDAIRE------EGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIDG 474 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F+ I PADIFTL+ R + +++N G+G+ S L+ +I + Sbjct: 475 LGAKQVEQFYGD----GWIAEPADIFTLKTRYGSGMQQLKNREGWGEKSADKLFQAIEDK 530 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R ISL R IF+LGIRHVG + +A++Y S+ F + + + + W LI V VG Sbjct: 531 RKISLSRLIFALGIRHVGEAASNLIAQHYGSWTAFEAAMGHAKSGDGPAWDDLIGVDGVG 590 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++AQ++V + +++ L+ E+S S + K +VFTGTL+K+ R + Sbjct: 591 QVMAQSLVSTFAQEAERASIDRLVTELSVQDVALPDTEGSPVAGKTVVFTGTLEKMTRAE 650 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+ +LGA VS +S KTDI++ G GSK +KA LG++ ++E+ +L L+ Sbjct: 651 AKARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAADLGIQTLDEDGWLALID 704 >gi|254488738|ref|ZP_05101943.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101] gi|214045607|gb|EEB86245.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101] Length = 706 Score = 828 bits (2138), Expect = 0.0, Method: Composition-based stats. Identities = 303/716 (42%), Positives = 442/716 (61%), Gaps = 15/716 (2%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + I ++ LS +QA +EL L ++ + YY P I D+EYD LKRR I FP Sbjct: 3 EHIAVQDLSKDQAAEELRRLSGLLAQANRQYYAEDAPQISDAEYDCLKRRNTEIETRFPS 62 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L R+ + P +IG + KV H +P LSL + ED+ +F RI ++ D Sbjct: 63 LKRA---DSPTEQIGATPSEGFSKVRHEVPMLSLGNAFEDEDVVEFDGRIRKYLGLPSDA 119 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + FT EPKIDG +++RYE G V AA RGDG GE+V+A R I TIP+ L + P++ Sbjct: 120 DLDFTAEPKIDGLSLSLRYENGLLVQAATRGDGAVGENVTANARTIQTIPKKL-DSAPDV 178 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGL 243 IE+RGEVY+S +DF ALN G K +ANPRNAA+G LR+L+ +R L FF + Sbjct: 179 IEIRGEVYMSHDDFDALNARQGERGGKLFANPRNAAAGSLRQLDAEITRSRPLKFFAYAW 238 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G SE + Q E +++M +GF N ++ ++ Y ++++ R+TL YDIDG+V Sbjct: 239 GALSEPLGQTQSEAIKRMENMGFCTNPLTELCSSVAEMIDQYRKIEAQRATLGYDIDGVV 298 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKV++ +LQ++LG R+ +PRW I+HKF + A T L DI IQ+GRTG L+PVARL+PV + Sbjct: 299 YKVNDLALQERLGFRSTTPRWAIAHKFPAELAWTTLEDITIQVGRTGALSPVARLKPVTV 358 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +++NATLHNEDYIKG+D+ G +R G+DIRVGD V V RAG+VIPK+ D+ ++ R Sbjct: 359 GGVVVSNATLHNEDYIKGVDSKGNQIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSRRPS 418 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 D+ PF FP+ CP C S +R+ + A RC GGL C AQ +E+LKHFVSR AF+I Sbjct: 419 DSVPFDFPTICPECGSDAIRE------EGDAVRRCMGGLVCPAQAVEKLKHFVSRAAFDI 472 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 +GLG +Q++ F+ I PADIFTLQ R + +++N G+G+ S T L+ +I+ Sbjct: 473 DGLGAKQVEQFYTD----GWIAEPADIFTLQARYGSGVQQLKNREGWGEKSATKLFQAID 528 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPL 603 +R I L R IF+LGIRHVG + +A +Y ++ F + N + W LI V Sbjct: 529 DKRTIPLARLIFALGIRHVGEAASNLIALHYGTWSAFITAMENAREASGPAWDDLISVDG 588 Query: 604 VGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 VG ++AQ++V + +++ L+ E+S S ++ K +VFTGTL+K+ R Sbjct: 589 VGQVMAQSLVSTFAQEAERASIDRLVAELSIQDATRPDTQGSPVDGKTVVFTGTLEKMTR 648 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ +LGA VS +S KTDI++ G GSK +KA +LG++I++E+ +L L+ Sbjct: 649 AEAKARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAAELGIEILDEDAWLDLIA 704 >gi|83953544|ref|ZP_00962265.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1] gi|83841489|gb|EAP80658.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1] Length = 706 Score = 826 bits (2135), Expect = 0.0, Method: Composition-based stats. Identities = 293/714 (41%), Positives = 431/714 (60%), Gaps = 15/714 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 ++ LS E+A+ EL+ L + + Y+ P + D+EYD LKRR AI FP L Sbjct: 5 TALQELSEEEAKAELARLADLLGRANAAYHTQDAPDLSDAEYDRLKRRNQAIEERFPRLK 64 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R+ + P +K+G KV H + LSL + ED+ F RI ++ + Sbjct: 65 RA---DSPSDKVGAAPAEGFGKVRHDVAMLSLGNAFEDEDVVDFDARIRKYLGLPSGTPL 121 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG +++RYE G+ V AA RGDG GE+V+A R I TIP + P ++E Sbjct: 122 AFTAEPKIDGLSLSLRYENGELVQAATRGDGAVGENVTANARTIDTIPTRIQ-GAPALLE 180 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245 VRGEVY+ +DF ALN A G K +ANPRNAA+G LR+L+ R L FF + G Sbjct: 181 VRGEVYMRHHDFDALNARQTANGGKTFANPRNAAAGSLRQLDAEITRARPLAFFAYAWGA 240 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A Q+ ++++ GF N + ++++Y +++ R+TL YDIDG+VYK Sbjct: 241 LSAPLADTQFHAIERLSAFGFDTNPLTTLCDGPQEMIAHYRKIEEQRATLGYDIDGVVYK 300 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V++ +LQ +LG R+ +PRW I+HKF + A TRL DI IQ+GRTG L+PVARL+PV +GG Sbjct: 301 VNDLALQDRLGFRSTTPRWAIAHKFPAELAWTRLEDITIQVGRTGALSPVARLKPVTVGG 360 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYIKGLD+ G +R G+DIRVGD V V RAG+VIPK+ D+ + +R D+ Sbjct: 361 VVVSNATLHNEDYIKGLDSKGASIRDGKDIRVGDWVQVYRAGDVIPKIADVDLGKRPEDS 420 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + + +P+ CP C S +R+ + A RCTGGL C AQ +E+LKHFVSR AF+I+G Sbjct: 421 EAYVYPTTCPECGSDAIRE------EGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIDG 474 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F+ I PADIFTL+ R + +++N G+G+ S L+ +I + Sbjct: 475 LGAKQVEQFYAD----GWIAEPADIFTLKARYGSGMQQLKNREGWGEKSADKLFQAIEDK 530 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I L R IF+LGIRHVG + +A++Y S+ F + + + + W LI V VG Sbjct: 531 RKIPLSRLIFALGIRHVGEAASNLIAQHYGSWTAFEAAMGHAKSGDGPAWDDLIGVDGVG 590 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++AQ++V + +++ L+ E+S S + K +VFTGTL+K+ R + Sbjct: 591 QVMAQSLVSTFAQEAERASIDRLVTELSVQDVARPDTEGSPVAGKTVVFTGTLEKMTRAE 650 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A+ +LGA VS +S KTDI++ G GSK +KA LG++ ++E+ +L L+ Sbjct: 651 AKARAERLGAKVSGSVSAKTDILVAGPGAGSKAKKAADLGIQTLDEDGWLALID 704 >gi|39936579|ref|NP_948855.1| DNA ligase [Rhodopseudomonas palustris CGA009] gi|39650435|emb|CAE28958.1| DNA ligase [Rhodopseudomonas palustris CGA009] Length = 692 Score = 826 bits (2133), Expect = 0.0, Method: Composition-based stats. Identities = 298/706 (42%), Positives = 441/706 (62%), Gaps = 27/706 (3%) Query: 23 SLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEM 82 L EI HD YYQ P I D++YDAL+RR +AI FP+L + + P +G Sbjct: 2 RLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPELVNA---SSPTQTVGAAP 58 Query: 83 NLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIR 142 KV H++P LSL + +++ +F R+ RF + D +I EPKIDG +++R Sbjct: 59 ARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLDDVPAI--VAEPKIDGLSLSLR 116 Query: 143 YEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISKNDFLAL 201 YE G+ V AA RGDG +GEDV+A +R I +P L IP E+RGEVY+ K DFLAL Sbjct: 117 YENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKHIPATCELRGEVYMLKQDFLAL 176 Query: 202 NDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAK--GQYEML 258 N +ANPRN+A+G LR+ + T +R L FF + G+ S+ + Q++ML Sbjct: 177 NKRQEEANETVFANPRNSAAGSLRQKDVTVTASRPLKFFAYAWGEMSDYPMEEPTQHKML 236 Query: 259 QKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGER 318 Q + GF VN + ++ +++Y + R++LPYDIDG+VYKVD Q++LG Sbjct: 237 QWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPYDIDGVVYKVDRLDYQERLGFV 296 Query: 319 ARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDY 378 +RSPRW I+HKFA +QA+T L IDIQ+GRTG +TPVARL+PV +GG ++ NATLHNEDY Sbjct: 297 SRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVARLQPVTVGGVVVQNATLHNEDY 356 Query: 379 IKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQ 438 IKG+ G+ +R G DIR GD V+V+RAG+VIP++V +++ +R A+P+ FP CP+C Sbjct: 357 IKGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVVMEKRPAGAEPYHFPHKCPVCG 416 Query: 439 SRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSE 498 S VR+ A RCTG L C AQ +ERLKHFVSR AF+I+GLG++Q++ F + Sbjct: 417 SHAVREEGE------AVWRCTGALICPAQAVERLKHFVSRLAFDIDGLGEKQIELFHER- 469 Query: 499 DPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLG 558 ++ PADIFTL+ R + K+E + G+G+ SV NL+ +I+ RR+I L R +F+LG Sbjct: 470 ---GWVQEPADIFTLKARN--AELKLEQLEGYGETSVRNLFAAIDARRSIELHRLVFALG 524 Query: 559 IRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD------WLSLIRVPLVGDIIAQAI 612 IRHVG A+ LA++Y + F + ++ + L + +GD++A+A+ Sbjct: 525 IRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNTSEAYQDLDNIAGIGDVVAEAV 584 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 VEF+ RNI A++ALL E++ + + + + K +VFTG+L K R +A+ + Sbjct: 585 VEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKTVVFTGSLSKFTRDEAKAAAER 644 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ E+++L L+ Sbjct: 645 LGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTEDEWLALI 690 >gi|319899147|ref|YP_004159240.1| DNA ligase [Bartonella clarridgeiae 73] gi|319403111|emb|CBI76669.1| DNA ligase [Bartonella clarridgeiae 73] Length = 718 Score = 825 bits (2132), Expect = 0.0, Method: Composition-based stats. Identities = 324/720 (45%), Positives = 464/720 (64%), Gaps = 16/720 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD YY+ +P I D+EYDAL+RR AI + FP+L R+ Sbjct: 6 IKNLTALEAASELEWLAKEIARHDVLYYRDDQPEISDAEYDALRRRNGAIENLFPELIRA 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P KIG ++ K H+ P LSL+ +N +D+ +F+ RI RF + + I Sbjct: 66 ---DSPTFKIGAPISEKFEKSVHAQPMLSLDNAFNFKDVSEFVERIRRFLRFPETQIIKM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE GK V A RG+G+ GE+V+ R I IP+VL P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYETGKLVRAVTRGNGYIGENVTTNARTIADIPQVLQGKFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGQKDFQLLNISQQKEGKLAFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEMS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ + Q EM+++++ GF +N + ++SYY+ ++ R +L YDIDG+VYKV+ Sbjct: 243 EMPVESQMEMMERLKEYGFIINPLTKVFEKLEDLISYYHFIEECRQSLDYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG +RSPRW I+HKF ++A L IDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLVLQTRLGFVSRSPRWAIAHKFPAEKAIALLESIDIQVGRTGALTPVARLTPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNA+LHNEDYIKG+ + +R GRDIRVGD V+++RAG+VIP++VD++V +R D Sbjct: 363 VTNASLHNEDYIKGIGYKNEPIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPRDTPA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C S VR+ A RCTGGL CSAQ +ER+ HFVSR+AF+IEG G Sbjct: 423 FVFPHLCPVCGSHAVREKGE------AVRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++FFF ++D I PADIFTLQRRQ+ S ++EN+ GFG VSV LY++IN RR Sbjct: 477 RKQVEFFFHAQDETLCIHSPADIFTLQRRQENSLKRLENMEGFGVVSVRKLYNAINARRK 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601 +SL RF+F+LGIRHVG A+ LA+ Y +Y F + I + N+ W+ L + Sbjct: 537 VSLSRFLFALGIRHVGEVNAQRLARAYQNYTAFETAAMSAIMPSDKFSKGNEIWVELTNI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G + +AI++FYQ N + ALLKEV+P + S + K +VFTGTL+ + Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRDVLLALLKEVTPFHEVPVEIDYSPLAGKIIVFTGTLEHM 656 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+ +LGA S +S+K D ++ G GSKL KAQQLGV++++E+ +L L+ + Sbjct: 657 SRDEAKALAERLGAKTSNSISKKVDFLVSGFGAGSKLAKAQQLGVEVLDEKSWLKLIDGH 716 >gi|328542977|ref|YP_004303086.1| DNA ligase, NAD(+)-dependent [polymorphum gilvum SL003B-26A1] gi|326412723|gb|ADZ69786.1| DNA ligase, NAD(+)-dependent [Polymorphum gilvum SL003B-26A1] Length = 721 Score = 824 bits (2128), Expect = 0.0, Method: Composition-based stats. Identities = 326/722 (45%), Positives = 471/722 (65%), Gaps = 7/722 (0%) Query: 1 MKKRQLIP-IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 M ++ +E+LS ++A EL+ L EI+ HD Y+ P + D+EYDAL+RR AI Sbjct: 1 MNEKSAAAAVESLSRQEAEAELARLAAEIAAHDQRYFAEDAPTVSDAEYDALRRRNAAIE 60 Query: 60 HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 FPDL R + P+ +IG + KVTH+IP LSL+ ++ +D+R F+ R+ RF + Sbjct: 61 ERFPDLVREDSPSA---RIGAAPSEGFGKVTHAIPMLSLDNAFSDDDVRDFVARVRRFLR 117 Query: 120 KKDD-NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS 178 ++ T EPKIDG +++RYE G+ V AA RGDG GE+V+A R I IP L Sbjct: 118 LDPLMGALGVTAEPKIDGLSLSLRYEGGRLVSAATRGDGTVGENVTANARTIADIPHRLP 177 Query: 179 LNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237 +PE++EVRGEVY++ DF ALN M A G K +ANPRNAA+G LR+LNP R L Sbjct: 178 AGVPEVVEVRGEVYMAHADFAALNARMAANGGKVFANPRNAAAGSLRQLNPDITAARPLK 237 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 FF + G+ SE+ Q EM+ + GFPVN + + ++ Y+ ++ R+TL Y Sbjct: 238 FFAYAWGEMSEVPRATQMEMVSLIGAWGFPVNPRMVLCRSVEELIDVYHAIEEERATLGY 297 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKVD LQ +LG +RSPRW I+HKF ++A T L DI+IQ+GRTG LTPVA+ Sbjct: 298 DIDGVVYKVDRLDLQARLGFVSRSPRWAIAHKFPAEKAFTILRDIEIQVGRTGALTPVAK 357 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV +GG +++NATLHNEDYI+G+ G+ +RGG+D+R+GD V ++RAG+VIP+V+D+ Sbjct: 358 LEPVTVGGVVVSNATLHNEDYIRGIGQDGEPIRGGKDLRIGDTVQIQRAGDVIPQVIDVD 417 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R DA PF+FP+ CP+C S VR++N KTG+ A RCTGGL C+AQ E+LKHFVS Sbjct: 418 LAKRPADAVPFAFPTVCPVCGSHAVREINAKTGRPDAVRRCTGGLVCAAQAKEKLKHFVS 477 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI-ENILGFGDVSVT 536 R+AF+IEGLG +Q++FF+ IR PADIFTL+ R S + +N G+G+ S Sbjct: 478 RNAFDIEGLGDKQVEFFYDLPPEEGGIRTPADIFTLEARDAASPIRKLKNRDGWGETSAR 537 Query: 537 NLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWL 596 NL+ +I+ RR + L RFIF+LGIRHVG A+ LA+ Y S+ FA + H +D W Sbjct: 538 NLFAAIDARRRVDLNRFIFALGIRHVGEGNAKLLARAYGSWDAFAAAMRAAADHGSDAWA 597 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 L + VG+++A+A+V+F+ P N A++ALL EV+P S + K +VFTG Sbjct: 598 ELNAIDGVGEVVAEAVVQFFAEPHNREALDALLAEVTPLDAEKVAAEGSPVAGKTVVFTG 657 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 L+++ R +A+ +LGA V+ +S+KT +++ G GSKL+ AQ+L ++++ E+ + Sbjct: 658 ALERMTRDEAKAMAERLGAKVAGSVSKKTSLVVAGPGAGSKLKTAQELDIEVITEDDWFD 717 Query: 717 LL 718 L+ Sbjct: 718 LV 719 >gi|86749131|ref|YP_485627.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2] gi|123004307|sp|Q2IYJ4|DNLJ_RHOP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|86572159|gb|ABD06716.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2] Length = 714 Score = 823 bits (2127), Expect = 0.0, Method: Composition-based stats. Identities = 305/725 (42%), Positives = 443/725 (61%), Gaps = 27/725 (3%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 + I L+ +A+ E L EI H+ YYQ+ P + D+EYDAL+RR +AI FP Sbjct: 6 KPAPDIATLTKAKAKVEAMRLRLEIERHNSAYYQHDAPTVSDAEYDALRRRLEAIEAKFP 65 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 +L + P +G KV H++P LSL + +++ +F+ R+ RF + Sbjct: 66 ELV---SASSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVTEFVERVQRFLRLDAV 122 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IP 182 SI EPKIDG +++RYE G+ + AA RGDG +GEDV+A +R I IP L IP Sbjct: 123 PSI--VAEPKIDGLSLSLRYEHGELMRAATRGDGFTGEDVTANVRTIADIPTTLKAKTIP 180 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFFVH 241 E+RGEVY+ K DFLALN G +ANPRN+A+G LR+ + +R L FF + Sbjct: 181 AACELRGEVYMLKQDFLALNKRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAY 240 Query: 242 GLGKTSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 G+ S+ Q++ML ++ GF VN + + +++Y + R+ LPYDI Sbjct: 241 AWGEMSDYPMDEPTQFKMLGWLKQAGFVVNPEITLCTSVDDALAFYRRIGEQRAALPYDI 300 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG LTPVARL+ Sbjct: 301 DGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLQ 360 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ NATLHNEDYIKGL G +R G DIR GD V+V+RAG+VIP++V ++++ Sbjct: 361 PVTVGGVVVQNATLHNEDYIKGLGNDGSPLRDGVDIREGDTVVVQRAGDVIPQIVSVVLD 420 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DA P+ FP CP+C S R+ A RCTG L C AQ +ERLKHFVSR Sbjct: 421 KRPADATPYHFPHKCPVCGSHAAREEGE------AVWRCTGALICPAQAVERLKHFVSRL 474 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG++Q+ F + ++ PADIFTLQ R + K+E+I G+G+ SV NL+ Sbjct: 475 AFDIDGLGEKQIVLFHER----GWVKEPADIFTLQARN--AALKLEDIEGYGETSVRNLF 528 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQ------NFAQEINNIIAHNND 593 +I+ RR I L R IF+LGIRHVG A+ LA++Y + A E + ++ Sbjct: 529 AAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTLDAFLAAMRAAAEGQTEEGNTSE 588 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 + L + +G+++A A+VEF+ PRN+ A++ALL E+ + + + + K +V Sbjct: 589 AYQDLDNIAGIGEVVAAAVVEFFAEPRNVAALDALLAELKDVLPAEQARRDTAVAGKTVV 648 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTG+L K R +A+ +LGA V+ +S+KTD ++ G + GSKL KA+ LGV ++ E++ Sbjct: 649 FTGSLTKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGADAGSKLTKAKDLGVAVLTEDE 708 Query: 714 FLFLL 718 +L L+ Sbjct: 709 WLALI 713 >gi|91977847|ref|YP_570506.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5] gi|123735250|sp|Q133Y4|DNLJ_RHOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91684303|gb|ABE40605.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5] Length = 714 Score = 823 bits (2127), Expect = 0.0, Method: Composition-based stats. Identities = 306/727 (42%), Positives = 445/727 (61%), Gaps = 28/727 (3%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K I+ L+ +A+ EL L I HD YYQ P I D++YDAL+RR +AI Sbjct: 5 SKTAAPDIDKLTKPKAKVELMRLRLAIEGHDKAYYQDDAPKIPDADYDALRRRLEAIEAK 64 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L + P +G KV H++P LSL ++ +++ +F+ R+ RF + + Sbjct: 65 FPELL---SASSPSQTVGAAPARGFSKVQHAVPMLSLGNAFSDDEVGEFVERVQRFLKLE 121 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 D +I EPKIDG +++RYE G V AA RGDG +GEDV+A +R I IP L Sbjct: 122 DIPAI--VAEPKIDGLSLSLRYENGTLVRAATRGDGFTGEDVTANVRTIADIPTTLKAKT 179 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239 IP E+RGEVY+ K+DFLALN G +ANPRN+A+G LR+ + +R L FF Sbjct: 180 IPAACELRGEVYMLKHDFLALNKRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFF 239 Query: 240 VHGLGKTSEIFAK--GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + G+ S+ + Q+ ML + GF VN + ++ +++Y + R+ LPY Sbjct: 240 AYAWGEMSDYPMESPTQHAMLAWLGDAGFTVNPEITLCHSVDDALAFYRRIGEQRAALPY 299 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKVD Q +LG +RSPRW I+HKFA +QA T L IDIQ+GRTG LTPVAR Sbjct: 300 DIDGVVYKVDRLDYQARLGFVSRSPRWAIAHKFAAEQAVTVLEKIDIQVGRTGALTPVAR 359 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 L+PV +GG ++ NATLHNEDYIKG+ + G +R G DIR GD V+V+RAG+VIP++V ++ Sbjct: 360 LQPVTVGGVVVQNATLHNEDYIKGVGSDGSPLRDGVDIREGDTVVVQRAGDVIPQIVTVV 419 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +++R D + FP CP+C S R+ A RCTG L C AQ +ERLKHFVS Sbjct: 420 LDKRPADLPAYKFPHKCPVCGSHAAREEGE------AVWRCTGALICPAQAVERLKHFVS 473 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R AF+I+GLG++Q+ F + +R PADIFTL+ R + K+E++ G+G+ SV N Sbjct: 474 RLAFDIDGLGEKQIVLFHER----GWVREPADIFTLKARN--AELKLEDLEGYGETSVRN 527 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH------N 591 L+ +I+ RRNI L R IF+LGIRHVG A+ LA++Y S F + Sbjct: 528 LFAAIDARRNIELNRLIFALGIRHVGEGNAKLLARHYGSIDVFLAAMRAAAEGQTPEGNT 587 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKK 651 ++ + L + +GD++A+A+VEF+ PRN+ A++ALL+E+ + + + + K Sbjct: 588 SEAYQDLDNIAGIGDVVAEAVVEFFAEPRNVGALDALLREIEV-LPVEQAKQDTAVAGKT 646 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +VFTG L K R +A+ +LGA V+ +S+KTD ++ G++ GSKL KA+ LGV ++ E Sbjct: 647 VVFTGALTKFTRDEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKARDLGVAVLTE 706 Query: 712 EQFLFLL 718 +++L L+ Sbjct: 707 DEWLALI 713 >gi|298293088|ref|YP_003695027.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506] gi|296929599|gb|ADH90408.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506] Length = 725 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 299/735 (40%), Positives = 451/735 (61%), Gaps = 32/735 (4%) Query: 1 MKKRQL-IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIA 59 M R I +E L+ ++A KE + L EI+ HD YYQ P + D++YDAL+RR +AI Sbjct: 1 MSARTPDIDVEKLTADEAAKEHARLGDEIAGHDRRYYQDDAPSVSDADYDALRRRYEAIE 60 Query: 60 HAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQ 119 FP+L + K+G + KV H +P LSL + E++ +F+ R+ RF Sbjct: 61 AQFPELKGI---DSLSEKVGAAPSSKFAKVRHRVPMLSLGNAFADEEVEEFVARVRRFLG 117 Query: 120 KKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL 179 D + FT EPKIDG ++RYE G+FV AA RGDG GEDV+ +R I IP L Sbjct: 118 LSADAEVAFTAEPKIDGLSCSLRYENGQFVQAATRGDGFEGEDVTNNVRTIGEIPERLKG 177 Query: 180 N-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLN 237 N +P I EVRGEVY+ DF A+N+ A G+ +ANPRNAA+G LR+L+P +R L Sbjct: 178 NDVPGIFEVRGEVYMGHADFAAINERQSASGKPLFANPRNAAAGSLRQLDPKITASRPLR 237 Query: 238 FFVHGLGKTSE--IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTL 295 FF + G+ ++ + + Q+ +++ G P N + ++++Y+ ++ R++L Sbjct: 238 FFAYAWGEVADGALPSDTQFGVIEAFSRWGLPTNPLTVLCRSAQELLAHYHAIEEQRASL 297 Query: 296 PYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV 355 YDIDG+VYKVD +LQ++LG +RSPRW ++HKF ++A T+L I+IQ+GRTG LTPV Sbjct: 298 GYDIDGVVYKVDSLALQQRLGFVSRSPRWALAHKFPAQRAITQLERIEIQVGRTGALTPV 357 Query: 356 ARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRG-----GRDIRVGDRVLVKRAGEVI 410 A+L P+ +GG +++NA+LHNEDYIKG+ G +RG DIR GD V+++RAG+VI Sbjct: 358 AKLTPITVGGVVVSNASLHNEDYIKGIGGDGLPIRGTFNDEPVDIREGDWVVIQRAGDVI 417 Query: 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLE 470 P+VV + + R DA+P+ FP+ CP C S VR+ A RCTGGL C AQ +E Sbjct: 418 PQVVSVELERRPKDAKPYQFPTICPACGSHAVREDGE------AVRRCTGGLICPAQAVE 471 Query: 471 RLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQT--STTKIENIL 528 R++HFVSRDAF+IEGLG++Q+ FF ++ PADIFTL+ R S T+++N Sbjct: 472 RIRHFVSRDAFDIEGLGEKQVQAFFD----WGLVKQPADIFTLEARDSAPDSLTRLKNRD 527 Query: 529 GFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN--- 585 G+G+ S NL+ +I RR + + RF+++LGIRH+G A+ L ++Y + + + Sbjct: 528 GWGETSAKNLFAAIAARRKVPVNRFLYALGIRHIGETNAKRLMRHYPTIEALREAALAAE 587 Query: 586 ---NIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKN 642 N+ W + + +G ++A+A+V+F+ P N A++ALLKEV+P Sbjct: 588 MPGEAYPKGNEAWAEMNAIEGIGAVVAEAVVDFFHEPNNEAALDALLKEVTPE-PMEAVA 646 Query: 643 VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQ 702 + K +VFTG L+K+ R +A+ +LGA V+ +S+KTD ++ G + GSKL KA+ Sbjct: 647 GGGAVAGKTVVFTGALEKMTRDEAKAMAERLGAKVAGSVSKKTDYVVAGADAGSKLAKAR 706 Query: 703 QLGVKIMNEEQFLFL 717 +LGV ++ E+++L L Sbjct: 707 ELGVSVLTEDEWLEL 721 >gi|110679832|ref|YP_682839.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114] gi|123172419|sp|Q166E0|DNLJ_ROSDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|109455948|gb|ABG32153.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114] Length = 705 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 298/715 (41%), Positives = 440/715 (61%), Gaps = 15/715 (2%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 P+++L+ + A+KELS L + + Y+ PII D+++DA KRR AI FP L Sbjct: 3 FAPLDSLTEKAAKKELSKLADLLDQANTAYHANDAPIISDADFDAYKRRNLAIEERFPHL 62 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R+ + P +++G + KV HSI LSL ++ D+ F+ RI + D + Sbjct: 63 KRA---DSPTDRVGAAPSAGFSKVVHSIAMLSLANAFDEADVSDFVQRIRKHLGLSDIEA 119 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + FT EPKIDG +++RYE G V AA RGDG GE+V+ R IP IP +S N P+++ Sbjct: 120 LSFTSEPKIDGLSLSLRYENGTLVQAATRGDGAIGENVTENARTIPDIPEQIS-NAPDVL 178 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG 244 EVRGEVY+S DF ALN + G K +ANPRNAA+G LR+L+ +R L FF + G Sbjct: 179 EVRGEVYMSHADFEALNARQASAGAKLFANPRNAAAGSLRQLDARITQSRPLRFFAYAWG 238 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 SE K Q + +++++ GF N+ + N +++ Y ++ R++L YDIDG+VY Sbjct: 239 TLSEPLGKTQMQSIERLQSFGFQTNDLTEKCNGPEELLAQYRRIEERRASLDYDIDGVVY 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD+ LQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL+PV +G Sbjct: 299 KVDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTELQGIDIQVGRTGALSPVARLKPVTVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYI G D G V+RGG+DIRVGD V V RAG+VIPKV D+ + +R D Sbjct: 359 GVVVSNATLHNEDYIAGRDNKGDVIRGGKDIRVGDFVQVYRAGDVIPKVADVDLKKRPAD 418 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A P+ FP+ CP C S +R+ A RCTGGL C AQ +ERLKHFVSR AF+I+ Sbjct: 419 AIPYVFPATCPECGSDALREAG------DAVRRCTGGLICPAQAVERLKHFVSRAAFDID 472 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +Q++ F+K I PADIFTL+ R + +++N G+G+ S NL+D+I+ Sbjct: 473 GLGAKQIEQFYKD----GWISEPADIFTLRDRFGSGIQQLKNRDGWGEKSANNLFDAIDD 528 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +R I L R IF+LGIRHVG + +A++Y ++ F + + + + W L+ + V Sbjct: 529 KRQIPLARLIFALGIRHVGEAASNLIAQHYSTFDAFEKSMLAAQDKDGEAWDDLLSIDGV 588 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G ++AQ+++ +++ L+ ++ S + K +VFTGTL K+ R Sbjct: 589 GTVMAQSVIHAMGQAAERASIDRLVAQLDVQPSEAVVTDGSPVAGKTVVFTGTLSKMTRA 648 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ LGA V+ +S KTD ++ G GSK +KA +LGV+ ++E+ +L L++ Sbjct: 649 EAKSRAESLGARVAGSVSAKTDFLVAGPGAGSKAKKAAELGVQTLDEDGWLALIE 703 >gi|319408814|emb|CBI82471.1| DNA ligase [Bartonella schoenbuchensis R1] Length = 718 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 331/720 (45%), Positives = 470/720 (65%), Gaps = 16/720 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 ++ L+ +A EL L +EI+ HD Y +P I D++YDAL+RR I FP+L R+ Sbjct: 6 VKNLTALEAASELEWLAKEIARHDVLYNNNDQPEISDAQYDALRRRNTEIEALFPELIRT 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ KIG ++ K H+ LSL+ ++ ED+ +F+ R+ RF + ++ Sbjct: 66 DSPSY---KIGAPVSEKFEKSVHAQAMLSLDNAFSAEDVSEFVERVRRFLRLPSTQTLEM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE+GK V AA RGDG++GE+V+ R I IP+VL P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYEQGKLVRAATRGDGYTGENVTTNARTISDIPKVLQGEFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVYI + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYIRQEDFQVLNINQQKEGKIAFANPRNAAAGSLRQLDSRITASRKLKFFAYAWGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ AK Q EM+ K++ GF VN + ++SYY+ ++ R +L YDIDG+VYKV+ Sbjct: 243 EMPAKSQMEMVNKLKEYGFIVNPFTKVFEKVEDLISYYHFIEEQRQSLSYDIDGVVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG +RSPRW I+HKF ++A+ L IDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLGLQMRLGFVSRSPRWAIAHKFPAEKATALLEGIDIQVGRTGALTPVARLAPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNATLHNEDYIKG+ G+ +R GRDIR+GD V+V+RAG+VIP++VDII ++R DA P Sbjct: 363 VTNATLHNEDYIKGVGRKGEPIREGRDIRIGDTVIVQRAGDVIPQIVDIISSKRPKDAVP 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP C S VR++ A +RCTGGL CSAQ +ER++HFVSR+AF+IEGLG Sbjct: 423 FVFPHHCPACGSHAVREVGE------AVYRCTGGLICSAQAIERIRHFVSRNAFDIEGLG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 K+Q++FFF +D IR P DIFTL++RQ+ + T++ENI GFG +SV L+D+IN RR Sbjct: 477 KKQVEFFFNIQDETLCIRSPVDIFTLEKRQKKALTRLENIEGFGSLSVRKLFDAINARRE 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601 I L RF+F+LGIRHVG A+ LA+ Y +Y F + I N++W LI + Sbjct: 537 IPLSRFLFALGIRHVGEVNAQRLARVYRNYTAFEAAVMAAIVPHDKTDEGNEEWTDLISI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G + +AI++FYQ N + ALL+EV+P S I K +VFTGTL + Sbjct: 597 EGIGVRVGRAIIDFYQEAHNRDVLSALLQEVTPLPEEAIATDYSPIAGKIIVFTGTLMSM 656 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+ +LGA S +S+KTD++I G GSKL KA++LGV+I++E+ + L+++Y Sbjct: 657 SRDEAKALAERLGAKTSGSISKKTDLLIAGLGAGSKLTKAKELGVEIIDEDSWSQLIKEY 716 >gi|260433791|ref|ZP_05787762.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157] gi|260417619|gb|EEX10878.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157] Length = 708 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 298/714 (41%), Positives = 445/714 (62%), Gaps = 13/714 (1%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 IP++ L+ +QA++EL+ L + ++ Y+ P I D+EYDALKRR I FP L Sbjct: 4 PIPVQELTEDQAKEELARLASALLRANELYHGQDAPEISDAEYDALKRRNLEIEARFPHL 63 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R P+ P ++G + KV HS+ +SL ++ D+R F+ I ++ +D+ Sbjct: 64 KR---PDSPTEQVGARPSEGFDKVRHSVRMMSLGNAFDETDVRDFVRSIQKYLGLSEDDV 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 FT EPKIDG +++RYE G V AA RGDG GE+V+A + IP+ L+ P+I+ Sbjct: 121 PEFTAEPKIDGLSLSLRYENGTLVQAATRGDGEVGENVTANALTVGDIPKALT-GAPKIL 179 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG 244 EVRGEVY+S DF LN + G K +ANPRNAA+G LR+L+P +R L FF + G Sbjct: 180 EVRGEVYMSHEDFARLNQKQSESGGKLFANPRNAAAGSLRQLDPEVTRSRPLRFFAYAWG 239 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + SE + Q E L ++ LGF N R + ++++Y ++ R+TL YDIDG+VY Sbjct: 240 ELSEPLGQTQIEGLARLASLGFATNGLTRLCRSVEDMLAHYRTIEEQRATLGYDIDGVVY 299 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +G Sbjct: 300 KVNDLALQARLGYRSTTPRWAIAHKFPAETAWTRLEAIDIQVGRTGALSPVARLHPVTVG 359 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYI G DA G V+R G+DIRVGD V V RAG+VIPK+ D+ +++R Sbjct: 360 GVVVSNATLHNEDYIAGRDAKGNVIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSKRPDW 419 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A PF FP+ CP C S +R+ + + RCTGG+ C AQ +E+LKHFVSR AF+IE Sbjct: 420 AVPFEFPTKCPECGSDAIRE------EGDSVRRCTGGIICPAQAVEKLKHFVSRKAFDIE 473 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +Q++ F+ P ++ P DIFTLQ+R + + K+ N G+G SV L+ +I++ Sbjct: 474 GLGTKQIEMFYDD--PDLPVKTPVDIFTLQQRDEANLNKLANRKGWGRQSVAKLWAAIDE 531 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +R + L R +F+LGIRHVG + LA +Y S++ F + + +W L+ + V Sbjct: 532 KRTVPLARLLFALGIRHVGEAASNLLANHYGSWEAFEKAMTAAADFEGPEWQELLSIDGV 591 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G+++A+ +V + ++ L+ +++ S + K +VFTGTL+K+ R Sbjct: 592 GEVMARTLVSTFAQEAERKTIDDLVAQLNVLDAERPDTSDSPVAGKTIVFTGTLEKMTRA 651 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ LGA VS +S+KTDI++ G GSK +KA +LGVK+++E+++L L+ Sbjct: 652 EAKARAEALGAKVSGSVSKKTDIVVAGPGAGSKAKKAAELGVKVLDEDEWLHLI 705 >gi|319405996|emb|CBI79627.1| DNA ligase [Bartonella sp. AR 15-3] Length = 718 Score = 820 bits (2117), Expect = 0.0, Method: Composition-based stats. Identities = 326/720 (45%), Positives = 465/720 (64%), Gaps = 16/720 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD Y++ +P I D+EYDAL+RR + I FP+L R Sbjct: 6 IKNLTALEAEGELEWLAKEIARHDVLYHRDDQPEISDAEYDALRRRNEEIEALFPELVRV 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ KIG ++ K H+ P LSL+ +N +D+ +FI RI RF + + I Sbjct: 66 DSPSS---KIGAPISEKFEKSIHAQPMLSLDNAFNFKDVSEFIERIRRFLRFPETQIIEM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE GK V A RG+G+ GE+V+ R I IP++L P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVCAITRGNGYIGENVTTNARTIADIPQILQGKFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGQKDFQLLNISQQKEGKLAFANPRNAAAGSLRQLDSQITASRNLKFFAYAWGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A+ Q EM++K++ GF +N + ++SYY+ ++ R +L YDIDG+VYKV+ Sbjct: 243 EMPAESQIEMMEKLKEYGFIINPLTKVFEKVEDLISYYHSIEKCRQSLNYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG +RSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLMLQTRLGFVSRSPRWAIAHKFPAEKAIALLEDIDIQVGRTGALTPVARLTPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNA+LHNEDYIKG+ G+++R GRDIRVGD V+++RAG+VIP++VD++V +R Sbjct: 363 VTNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPKGTPT 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C S VR+ A RCTGGL CSAQ +ER+ HFVSR+AF+IEG G Sbjct: 423 FIFPRVCPVCGSHAVREEGE------AIRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++FFF +D I PADIFTLQRRQ+ S ++EN+ GFG VSV LY++IN RR Sbjct: 477 RKQVEFFFHIQDKTLCIHSPADIFTLQRRQENSLRRLENMEGFGVVSVRKLYNAINARRK 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601 ISL RF+F+LGIRH+G A+ LA+ Y +Y F + I N+ W+ L + Sbjct: 537 ISLSRFLFALGIRHIGEVNAQRLARAYQNYAAFETAAMSAIMPSGKNIEGNEIWMELTNI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G + +AI++FYQ N + ALLKEV+P S + K +VFTGTLQ + Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRNVLLALLKEVTPLHEMPVAIDYSPVVGKTIVFTGTLQHM 656 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+ +LGA S +S+KTD+++ G GSKL KAQQLG+++++E+ +L L+ + Sbjct: 657 SRDEAKSLAERLGAKTSNSISKKTDLLVAGSGAGSKLIKAQQLGIEVLDEKSWLKLIDGH 716 >gi|156933031|ref|YP_001436947.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ATCC BAA-894] gi|166215403|sp|A7MKW4|DNLJ_ENTS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|156531285|gb|ABU76111.1| hypothetical protein ESA_00834 [Cronobacter sakazakii ATCC BAA-894] Length = 672 Score = 818 bits (2112), Expect = 0.0, Method: Composition-based stats. Identities = 255/714 (35%), Positives = 403/714 (56%), Gaps = 49/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R A+ A P+L P+ Sbjct: 1 MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +V H +P LSL+ +++ F R+ + D ++ + E K Sbjct: 58 PTQRVGAAPLTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRLKSTD--ALVYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GED++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLRGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + E LQ+ + G PV++ +R T ++++Y+++++ R TL +DIDG+V KVD Sbjct: 236 PRSHMERLQQFKAWGLPVSDRIRLVKTPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PAQCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S NL +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNLVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + A N L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLE----------ALINASIDDLQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666 + F++ N + L +EV + + + S K +V TGTL ++ R A Sbjct: 559 HVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFAGKTVVLTGTLSQMSRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL + Sbjct: 619 KARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 672 >gi|293395040|ref|ZP_06639327.1| DNA ligase [Serratia odorifera DSM 4582] gi|291422447|gb|EFE95689.1| DNA ligase [Serratia odorifera DSM 4582] Length = 673 Score = 817 bits (2111), Expect = 0.0, Method: Composition-based stats. Identities = 247/715 (34%), Positives = 397/715 (55%), Gaps = 50/715 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E K+++ L + +H+ Y+ P I D+EYD L R + A P+L + + Sbjct: 1 MEPNNKKINQLRTSLRHHEYLYHVLDAPEIPDAEYDRLMRELRTLEEAHPELITA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ + F R+ + + + F E K Sbjct: 58 PTQRVGAAPLTAFDQVRHEVPMLSLDNVFDEDSYLAFYKRVQDRLKSSE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLIGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +NDE K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEKMNDEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + Y+ L + + G PV++ VR ++++Y +++ RS L +DIDG+V K+D+ Sbjct: 236 PRSHYQRLMQFKAWGLPVSDRVRLCTGSDQVLAFYRQVEQDRSQLGFDIDGVVVKIDDID 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW + KF ++ T + +++ Q+GRTG +TPVARLEPV + G ++N Sbjct: 296 LQERLGFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV ++ + R PDA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVEDRRPPDAREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PQHCPVCGSDVERVEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E ++ PA +F L T ++ G S NL ++ K + + Sbjct: 459 IEQLVEKE----YVKNPAGLFRLTAGMLTGLDRM------GPKSAQNLASALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ S D +L +VP VG+++A+ Sbjct: 509 ARFLYALGIREVGESTAANLAAHFGSLDKLRAA----------DVEALKQVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEA-----LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +V F+ N ++ + + + + S K +V TG+L ++ R + Sbjct: 559 HVVNFFAEALNQQVIDELVSDDIGIHWPAPVVVAVEEIDSPFAGKTVVLTGSLSQLSRDE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Q Sbjct: 619 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEAEMIRLLGQ 673 >gi|73541575|ref|YP_296095.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134] gi|123732913|sp|Q470D2|DNLJ_RALEJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|72118988|gb|AAZ61251.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134] Length = 711 Score = 817 bits (2110), Expect = 0.0, Method: Composition-based stats. Identities = 259/730 (35%), Positives = 385/730 (52%), Gaps = 54/730 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P L A + + L E+ H+ YY P I D+EYDAL A+ P+L Sbjct: 15 PAGGLPPATAAERVQWLRDELDRHNYQYYVLDAPTIPDAEYDALFTELQALEAEHPELL- 73 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GG + V H +P LSL ++ ED+ F R + + Sbjct: 74 --TPDSPTQRVGGAPLSAFDTVRHRVPMLSLNNGFSDEDVTGFDRRCAQGLGRSAAAGGE 131 Query: 124 -------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176 + + E K DG +++RYE G+ V AA RGDG +GEDV+ +R I IP Sbjct: 132 QDLFSAAEGVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLK 191 Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235 L P ++EVRGEV++ + DF LN G K + NPRNAA+G LR+L+P R Sbjct: 192 LRGAAPAVLEVRGEVFMYRRDFDKLNARQAEAGDKTFVNPRNAAAGSLRQLDPRITAKRP 251 Query: 236 LNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L+FF +GLG+ I ML +G PV N G++ +Y ++ R Sbjct: 252 LSFFAYGLGELQGIERPATHSAMLDGFATMGLPVCNERAVVKGAQGLLDFYRKVGEKRDQ 311 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LPYDIDG+VYKV+ + Q+QLG +R+PR+ ++HKF ++ +T + DI++Q+GRTG +TP Sbjct: 312 LPYDIDGVVYKVNALAEQEQLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITP 371 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +TNATLHNED ++ +D+ +GD V+V+RAG+VIP+VV Sbjct: 372 VARLQPVFVGGVTVTNATLHNEDEVRR-----------KDVHIGDTVIVRRAGDVIPEVV 420 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 +++ R DA+ F P+ CP+C S + R + A RCTGGL C+AQ+ + L H Sbjct: 421 AVVLERRPDDARAFVMPTACPVCGSHIERLEDE------AIARCTGGLICAAQRKQALLH 474 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F R A +IEGLG + ++ +R PAD++ L + + ++ D S Sbjct: 475 FAQRRAMDIEGLGDKVVEQLVDQ----GIVRTPADLYKLGVAKLAALDRMA------DKS 524 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 NL +I R+ + RFIFSLGIRHVG A+ LA+++ D Sbjct: 525 AGNLVAAIEASRSTTFNRFIFSLGIRHVGEATAKDLARHFGKLDGLMVA----------D 574 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLV 653 +L+ V VG ++AQ+IV F+ P N+ +E V + + K V Sbjct: 575 EAALLEVNDVGPVVAQSIVNFFGEPHNVEVIEQLRAAGVHWPESEPVARAPAPLAGKTFV 634 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGTL + R A+E + GA V+ +S+KTD ++ G GSKL+KA+ LGV +++E Sbjct: 635 LTGTLPSLSREAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAG 694 Query: 714 FLFLLQQYNT 723 L LL+ Sbjct: 695 MLALLESVGA 704 >gi|283786048|ref|YP_003365913.1| DNA ligase [Citrobacter rodentium ICC168] gi|282949502|emb|CBG89116.1| DNA ligase [Citrobacter rodentium ICC168] Length = 671 Score = 817 bits (2110), Expect = 0.0, Method: Composition-based stats. Identities = 248/711 (34%), Positives = 396/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G S ++ H +P LSL+ +++ E F R+ + D + + E K Sbjct: 58 PTQRVGAAPLTSFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSD--KLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED++A +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITANVRTIRAIPLRLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV+N V ++ ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSNRVTLCDSPEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGYVARAPRWAVAFKFPAQEQMTSVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPAETRPVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PAQCPVCGSDVERVEGE------AVTRCTGGLICAAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ D++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVDALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAFFGTLE----------ALEAASIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIRQLLAEGVHWPAPVAIKAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|121602535|ref|YP_989218.1| NAD-dependent DNA ligase LigA [Bartonella bacilliformis KC583] gi|166215397|sp|A1UTB5|DNLJ_BARBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|120614712|gb|ABM45313.1| DNA ligase, NAD-dependent [Bartonella bacilliformis KC583] Length = 717 Score = 816 bits (2109), Expect = 0.0, Method: Composition-based stats. Identities = 323/723 (44%), Positives = 472/723 (65%), Gaps = 16/723 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 + L+ +A +EL L +EI+ HD Y + +P I D+ YDAL+RR I FP+L R Sbjct: 4 DAKNLTALEAERELEWLAKEIARHDVLYNNHDQPEISDARYDALRRRNIEIETLFPELVR 63 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 ++ P+ K+G ++ K H+ LSL+ ++ ED+ +F+ R+ RF + ++ Sbjct: 64 ADSPSY---KVGAPISERFEKSVHAQAMLSLDNAFSSEDVHEFVERVRRFLRLPVTKTLE 120 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEV 187 T EPKIDG +++RYEKGK V AA RGDG+ GE+V+ R + IP+VL + P+I+EV Sbjct: 121 MTAEPKIDGLSLSLRYEKGKLVCAATRGDGYVGENVTVNARTLSDIPQVLQGDFPDILEV 180 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKT 246 RGEVY+ +DF LN + G+ +ANPRNAA+G LR+L+ R L FF +G G+ Sbjct: 181 RGEVYMRHSDFQDLNVDQQEKGKLVFANPRNAAAGSLRQLDTRMTARRKLKFFAYGWGEV 240 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 SE+ AK Q EM++K++ GF +N + ++SYY+ ++ R L YDIDG+VYKV Sbjct: 241 SEMPAKSQMEMVKKLKEYGFVINPLTKVFKAVEDLISYYHFIEEGRQHLDYDIDGVVYKV 300 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 ++ LQ +LG +RSPRW I+HKF ++A L +IDIQIGRTG LTPVARL P+ +GG Sbjct: 301 NDLLLQTRLGNVSRSPRWAIAHKFPAEKAMALLENIDIQIGRTGALTPVARLAPITVGGV 360 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++TNA+LHNEDYIKGL + + +R GRDIR+GD V+V+RAG+VIP+++D+I+ +R A Sbjct: 361 VVTNASLHNEDYIKGLGSKSESIREGRDIRIGDTVIVQRAGDVIPQIIDVIIEKRPKGAS 420 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 PF FPS CP C S VR++ A RCTGGL C AQ +ER++HFVSR+AF+IEGL Sbjct: 421 PFVFPSLCPACGSHAVREVGE------AVRRCTGGLICPAQAIERIRHFVSRNAFDIEGL 474 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++Q++FFF ++D I PADIFTLQ+RQ+ S T++EN+ GFG +SV LYD+IN RR Sbjct: 475 GEKQVEFFFHAQDETLRIHSPADIFTLQKRQEKSLTRLENMEGFGTLSVRKLYDAINARR 534 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQ-EINNII-----AHNNDDWLSLIR 600 I L RF+F+LGIRHVG AR LA+ Y +Y F + ++ N++WL L Sbjct: 535 KIPLSRFLFALGIRHVGEVNARRLARAYQNYNAFETVAMTALMPCNKEDKGNEEWLELTS 594 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G + +AI++FYQ N + +LL+EV+P S + K +VFTGTL Sbjct: 595 IEGIGVRVGKAIIDFYQETHNRDVLSSLLQEVTPLPEEAAVADYSPVAGKTIVFTGTLVH 654 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + R + + +LGA S+ +S+KTD+++ G GSKL KA++LG++IM+EE +L L+ + Sbjct: 655 MSRDEVKALAERLGAKASSSISKKTDLLVAGIGAGSKLTKAKELGIEIMDEESWLQLINE 714 Query: 721 YNT 723 ++ Sbjct: 715 HHI 717 >gi|163731899|ref|ZP_02139346.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149] gi|161395353|gb|EDQ19675.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149] Length = 705 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 290/715 (40%), Positives = 443/715 (61%), Gaps = 15/715 (2%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 +P+++L+ + A +ELS L + + + Y+ P + D+EYDA KRR A+ FP L Sbjct: 3 FVPLDSLNEKAAEEELSRLAELLEQANTAYHTKDAPFMSDAEYDAYKRRNLALEDRFPHL 62 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R+ + P + +G + KV+HS+ LSL ++ ED+ F+ RI + D Sbjct: 63 KRA---DSPTDVVGAAPSAGFAKVSHSMAMLSLANAFDDEDVFDFVQRIRKHLGLSDAEP 119 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + FT EPKIDG +++RYE G V AA RGDG GE+V+A I IP+ + N P+++ Sbjct: 120 LHFTSEPKIDGLSLSLRYENGALVQAATRGDGAVGENVTANALTINDIPQRVP-NAPDVL 178 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG 244 EVRGEVY+S DF ALN++ A G K +ANPRNAA+G LR+L+ R L FF + G Sbjct: 179 EVRGEVYMSHTDFEALNEKQNAAGAKAFANPRNAAAGSLRQLDARITQNRPLRFFAYAWG 238 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + K Q + +++++ LGF N + + +++ Y ++ R++L YDIDG+VY Sbjct: 239 TLTAPLGKTQSDSIERLKNLGFQTNELTDRCDGPEALLAQYRRIEERRASLDYDIDGVVY 298 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD+ LQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL+P+ +G Sbjct: 299 KVDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTELQSIDIQVGRTGALSPVARLKPITVG 358 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHNEDYI G D G V+R G+DIR GD V V RAG+VIPKV D+ +++R + Sbjct: 359 GVVVSNATLHNEDYIAGRDNKGGVIRDGKDIRAGDYVQVYRAGDVIPKVADVDLDKRPAE 418 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A PF FP+ CP C S +R+ A RCTGGL C AQ +ERLKHFVSR AF+I+ Sbjct: 419 AIPFVFPTTCPECGSDALREAG------DAVRRCTGGLICPAQAVERLKHFVSRAAFDID 472 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 GLG +Q++ F+K + PADIFTL+ R ++ +++N G+G+ S TNL+D+I++ Sbjct: 473 GLGAKQIEQFYKD----GWVSEPADIFTLRDRYESGMQQLKNRDGWGEKSATNLFDAIDE 528 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 +R I L R +F+LGIRHVG + +A++Y ++ F + D W L+ + V Sbjct: 529 KREIPLARLLFALGIRHVGEAASNLIAQHYSTFDAFEKSTLAAQIEEGDAWDDLLSIDGV 588 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G ++AQ++V P +++ L+ ++ + + S + K +VFTGTL+++ R Sbjct: 589 GTVMAQSLVHTMGQPAERASIDRLVAQLKVQPSKPIVSDGSPVAGKTVVFTGTLERMTRA 648 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 +A+ LGA V+ +S KTD ++ G GSK +KA +LG++ ++E+ +L L++ Sbjct: 649 EAKSRAESLGAKVAGSVSAKTDFLVAGPGAGSKAKKAVELGIRTLDEDGWLALIE 703 >gi|154252874|ref|YP_001413698.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1] gi|190359267|sp|A7HVV8|DNLJ_PARL1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|154156824|gb|ABS64041.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1] Length = 710 Score = 816 bits (2107), Expect = 0.0, Method: Composition-based stats. Identities = 306/712 (42%), Positives = 450/712 (63%), Gaps = 21/712 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 ++ L++E+A +EL L EI HD YYQ P I D+EYD L+RR +AI +P+L R Sbjct: 16 DVDHLTLEEAPEELERLAAEIEKHDKLYYQKDAPRISDAEYDTLRRRNEAIEARYPELVR 75 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P +++G + KV H +P LSL ++ ED+R F RI RF K+++ + Sbjct: 76 E---DSPSHRVGAQPADGFGKVVHKVPMLSLSNAFDDEDVRDFALRIRRFLNLKEEDILP 132 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186 T EPKIDG +RYEKGKFV A RGDG GE+V+ ++ I IP L NIP+++E Sbjct: 133 ITAEPKIDGLSAALRYEKGKFVMGATRGDGREGENVTENLKTIGDIPAELKGKNIPDVVE 192 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+S DF ALN+ G+ +ANPRNAA+G LR+L+ +R L FF + G+ Sbjct: 193 VRGEVYMSHEDFAALNERQREAGKPVFANPRNAAAGSLRQLDAKITASRPLRFFAYTWGE 252 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S++ A Q ++ R GF VN + +T ++ +Y++++ R+TL YDIDG+VYK Sbjct: 253 MSDLPADTQSGVMDAFRKWGFTVNPLFGRCDTVEALIDFYHDIEERRATLGYDIDGVVYK 312 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD Q +LG +RSPRW ++HKF +QA T L I+IQ+GRTG LTPVARL PV +GG Sbjct: 313 VDRLDWQNRLGFVSRSPRWALAHKFPAEQAMTVLEKIEIQVGRTGALTPVARLTPVTVGG 372 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHN D I+ L +R GD V+V+RAG+VIP++V ++ + R Sbjct: 373 VVVSNATLHNADEIERLG-----------VRPGDTVVVQRAGDVIPQIVRVVED-RPRGK 420 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + F FP CP C S VR++NPKTGKL A RCTGGL C AQ +ERL+HFVSR+AF+IEG Sbjct: 421 KKFVFPDTCPECGSHAVREVNPKTGKLDAVARCTGGLVCPAQAVERLRHFVSRNAFDIEG 480 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++Q+ FF+ I+ P DIFTL R S K+++ G+G S L+D+I+ R Sbjct: 481 LGEKQIAAFFED----GLIKKPDDIFTLAARDAKSLKKLKDREGWGATSARKLFDAIDAR 536 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R + L+RFIF LGIRHVG AR LA+ Y + +F +++ ++ + L+ + VG Sbjct: 537 REVELDRFIFGLGIRHVGETNARLLARSYGTLDHFEEQMRAAADREDEAYAELLSIDGVG 596 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +++A++IV+F+ N ++ L + + ++ SS + K +VFTG+L+K+ R + Sbjct: 597 EVLAESIVDFFAEKHNREVLDGLREAGVKGVPLPKQETSSPVAGKTVVFTGSLEKMTRSE 656 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 A+ QLGA V+ +S KTDI++ G + GSKL KA++LG++I++E+Q++ L Sbjct: 657 AKARAEQLGAKVAGSVSAKTDILVAGADAGSKLAKARELGIEILDEDQWIEL 708 >gi|301155433|emb|CBW14899.1| DNA ligase, NAD(+)-dependent [Haemophilus parainfluenzae T3T1] Length = 667 Score = 815 bits (2106), Expect = 0.0, Method: Composition-based stats. Identities = 260/705 (36%), Positives = 410/705 (58%), Gaps = 45/705 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ +L Q++ ++ Y+ P I D+EYD L + A+ A P+L + + P + Sbjct: 4 QQQIDTLRQDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELITA---DSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + ++ H IP LSL+ ++ E+ F+ RI + D + F EPK+DG Sbjct: 61 VGAKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLPD-PLTFCCEPKLDGL 119 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 ++I Y G AA RGDG +GED++A IR I IP ++L N P +EVRGEV++ Sbjct: 120 AVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLQLLMDNPPARLEVRGEVFMPHE 179 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQ 254 F LN + + G K +ANPRNAA+G LR+L+P + R L +G+G + Sbjct: 180 GFERLNQQALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGIAEGVDLPNTH 239 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ +LQ++ Sbjct: 240 YDRLQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQEK 299 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +++PRW I++KF ++ TRL D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 300 LGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 359 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L DI +GD V+++RAG+VIP+++ ++ + R DA+P FP C Sbjct: 360 NGDEIERL-----------DIAIGDMVVIRRAGDVIPQIIGVLHDRRPADARPIVFPETC 408 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S +VR A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 409 PVCDSAIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQL 462 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E I PAD+F L T+ T+ + G S N S+ K +N +L RF+ Sbjct: 463 VDRE----LIHTPADLFKLD---LTALTR---LERMGTKSAENALASLEKAKNTTLARFV 512 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A +LA ++ + + A N D +L +VP VG+++A I+ Sbjct: 513 FALGIREVGEATALNLANHFKTLE----------ALQNADLEALQQVPDVGEVVANRILA 562 Query: 615 FYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+ P N+ V L+ + V ++ + + + K +V TGTL ++ R++A+ + + Sbjct: 563 FWHEPHNVAVVNDLIAQGVHWETVEAKEVIENRFKGKTVVLTGTLTQMGRNEAKALLQDM 622 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 GA VS +S KTD +I GD GSKL KAQ+LGV ++ EE+FL + Sbjct: 623 GAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEEEFLAQI 667 >gi|319407493|emb|CBI81141.1| DNA ligase [Bartonella sp. 1-1C] Length = 725 Score = 815 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 327/720 (45%), Positives = 463/720 (64%), Gaps = 16/720 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD Y++ +P I D+EYDAL RR + I FP+L R+ Sbjct: 6 IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ KIG ++ K H+ P LSL+ +N ED+ +FI RI RF + + I Sbjct: 66 DSPSS---KIGAPISEKFEKSIHAQPMLSLDNAFNFEDVSEFIERIRRFLRLPETQIIEM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE GK V A RG+G GE+V+ R I IP++L N P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVRAITRGNGSIGENVTTNARTIADIPQILQANFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGQKDFQLLNINQQKEGKLVFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A+ Q M++K++ GF +N + ++SYY+ ++ R +L YDIDG+VYKV+ Sbjct: 243 EMPAESQIGMMKKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG ARSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLMLQTRLGFVARSPRWAIAHKFPAEKAIAFLEDIDIQVGRTGALTPVARLTPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 +TNA+LHNEDYIKG+ G+ +R GRDIRVGD V+++RAG+VIP++VD++V +R D Sbjct: 363 VTNASLHNEDYIKGIGHKGEPIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRPKDTPA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C S VR+ RCTGGL CSAQ +ER+ HFVSR+AF+IEG G Sbjct: 423 FIFPHVCPVCGSHAVREEGET------VRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++FFF ++D IR P DIFTLQRRQ+ S ++EN+ GFG VSV LY++IN RR Sbjct: 477 RKQVEFFFHAQDKMLCIRSPVDIFTLQRRQENSLKRLENMEGFGVVSVRKLYNAINARRE 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIA------HNNDDWLSLIRV 601 ISL RF+F+LGIRH+G A+ LA+ Y +Y F + I N+ W+ L + Sbjct: 537 ISLSRFLFALGIRHIGEVKAQRLARAYQNYTAFETAAMSAIMPPDKNNEGNEIWVELTNI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G + +AI++FYQ N + ALLKEV+P S I K + FTGTL+ + Sbjct: 597 EGIGFRVGKAIIDFYQEVHNRDILSALLKEVTPLHEAPVTIDYSPIVGKIITFTGTLEHM 656 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+ +LGA S +S+KTD+++ G GSKL KAQQLG+++++E+ +L L+ + Sbjct: 657 SRDEAKSLAERLGAKTSNSISKKTDLLVAGFGAGSKLTKAQQLGIEVLDEKNWLKLIDGH 716 >gi|22125389|ref|NP_668812.1| NAD-dependent DNA ligase LigA [Yersinia pestis KIM 10] gi|45442391|ref|NP_993930.1| NAD-dependent DNA ligase LigA [Yersinia pestis biovar Microtus str. 91001] gi|108808172|ref|YP_652088.1| NAD-dependent DNA ligase LigA [Yersinia pestis Antiqua] gi|108811556|ref|YP_647323.1| NAD-dependent DNA ligase LigA [Yersinia pestis Nepal516] gi|145599373|ref|YP_001163449.1| NAD-dependent DNA ligase LigA [Yersinia pestis Pestoides F] gi|149365146|ref|ZP_01887181.1| DNA ligase [Yersinia pestis CA88-4125] gi|162420672|ref|YP_001607138.1| NAD-dependent DNA ligase LigA [Yersinia pestis Angola] gi|165926903|ref|ZP_02222735.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. F1991016] gi|165940356|ref|ZP_02228875.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. IP275] gi|166011271|ref|ZP_02232169.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. E1979001] gi|166212520|ref|ZP_02238555.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. B42003004] gi|167398917|ref|ZP_02304441.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421338|ref|ZP_02313091.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424444|ref|ZP_02316197.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470665|ref|ZP_02335369.1| DNA ligase, NAD-dependent [Yersinia pestis FV-1] gi|218930038|ref|YP_002347913.1| NAD-dependent DNA ligase LigA [Yersinia pestis CO92] gi|229838581|ref|ZP_04458740.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895648|ref|ZP_04510819.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A] gi|229899147|ref|ZP_04514290.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. India 195] gi|229901826|ref|ZP_04516947.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516] gi|270490015|ref|ZP_06207089.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27] gi|122980211|sp|Q1CJV7|DNLJ_YERPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123372308|sp|Q1C5X9|DNLJ_YERPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|123776939|sp|Q7CJF3|DNLJ_YERPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166216255|sp|A4TMG4|DNLJ_YERPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781914|sp|A9QZH0|DNLJ_YERPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|21958274|gb|AAM85063.1|AE013752_4 DNA ligase [Yersinia pestis KIM 10] gi|45437255|gb|AAS62807.1| DNA ligase [Yersinia pestis biovar Microtus str. 91001] gi|108775204|gb|ABG17723.1| DNA ligase [Yersinia pestis Nepal516] gi|108780085|gb|ABG14143.1| DNA ligase [Yersinia pestis Antiqua] gi|115348649|emb|CAL21593.1| DNA ligase [Yersinia pestis CO92] gi|145211069|gb|ABP40476.1| DNA ligase [Yersinia pestis Pestoides F] gi|149291559|gb|EDM41633.1| DNA ligase [Yersinia pestis CA88-4125] gi|162353487|gb|ABX87435.1| DNA ligase, NAD-dependent [Yersinia pestis Angola] gi|165911711|gb|EDR30369.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. IP275] gi|165921254|gb|EDR38478.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. F1991016] gi|165989949|gb|EDR42250.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. E1979001] gi|166206451|gb|EDR50931.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. B42003004] gi|166960827|gb|EDR56848.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051421|gb|EDR62829.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056326|gb|EDR66095.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680722|gb|EEO76817.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516] gi|229687549|gb|EEO79622.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. India 195] gi|229694947|gb|EEO84994.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701454|gb|EEO89482.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A] gi|270338519|gb|EFA49296.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27] Length = 670 Score = 815 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 244/712 (34%), Positives = 403/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD + ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ + + + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L N+P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ + Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D + +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSQCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L + T ++ G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFQLTAGKLTGLDRM------GPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +E L K VS + + S K +V TG+L + R +A++ Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEESDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KT ++I G+ GSKL KAQ+LG+K+++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670 >gi|159044058|ref|YP_001532852.1| DNA ligase [Dinoroseobacter shibae DFL 12] gi|190359252|sp|A8LK52|DNLJ_DINSH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157911818|gb|ABV93251.1| DNA ligase [Dinoroseobacter shibae DFL 12] Length = 741 Score = 815 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 298/716 (41%), Positives = 433/716 (60%), Gaps = 15/716 (2%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 + +EALS ARKEL+ L + ++ + Y++ P + D++YDALK+R AI F Sbjct: 36 NDTYVAVEALSEAAARKELARLSELLARANAEYHRDDAPSLSDADYDALKQRNAAIEARF 95 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 PDL R + P +++G + + KVTH++ LSL ++ ED+R F TRI RF + Sbjct: 96 PDLKRG---DSPSDQVGAAPSDTFSKVTHAVRMLSLANAFSDEDIRDFDTRIRRFLGLAE 152 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIP 182 D + +T EPKIDG +++RYE G V AA RGDG GE+V+A R I IP L P Sbjct: 153 DAPLAYTAEPKIDGLSLSLRYEHGTLVQAATRGDGAVGENVTANARTIDDIPHRL-DGAP 211 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVH 241 E++EVRGEVY+S DF LN G K +ANPRNAA+G LR+L+ R L FF + Sbjct: 212 EVLEVRGEVYMSHADFAELNARQAETGGKTFANPRNAAAGSLRQLDAEITRARPLKFFAY 271 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+ S A+ Q E L + R GF +N + T +++ Y +++ R+TL YDIDG Sbjct: 272 AWGEISAPLAETQTETLARFREFGFTINPLTVRCETPEDMLAQYRAIEAQRATLGYDIDG 331 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYK+D+ LQ++LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV Sbjct: 332 VVYKLDDLDLQRRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLAPV 391 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG +++NATLHNEDYI+G D +G +R G DIRVGD V V RAG+VIPK+ D+ ++ R Sbjct: 392 TVGGVVVSNATLHNEDYIQGRDNTGAPIRWGTDIRVGDWVQVYRAGDVIPKIRDVDLSRR 451 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 A PF FP+ CP C S R+ A RC+GGL C AQ +E+LKHFVSR A Sbjct: 452 PEGAAPFDFPTTCPECGSDAPREPG------DAVRRCSGGLICPAQAVEKLKHFVSRGAL 505 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I+GLG +Q++ F++ I PADIFTL+ R +++N G+GD S NL+ + Sbjct: 506 DIDGLGAKQVEQFYRD----GWIAEPADIFTLRARFGQGLQQLKNREGWGDKSAENLFRA 561 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I+ R + +F LGIRH+G + LA +YL+ + ++ + +D W L+ + Sbjct: 562 IDTARTAPFAKVLFGLGIRHIGESASSLLANHYLTMEALLAAVDAAVDETSDAWADLLNI 621 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 VG+++A+A+V +V LL ++ P+ + S + K LVFTGTL+ + Sbjct: 622 DGVGEVMARALVTTLTQEAERASVNRLLAQIDPAPATPPQVGDSPVAGKTLVFTGTLETM 681 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 R +A+ LGA V+ +S KTD++I G GSK KA+ LG+++++E+ + L Sbjct: 682 SRAEAKATAEALGAKVAGSVSAKTDLLIAGPGAGSKATKAEALGIEVIDEDAWRVL 737 >gi|268593162|ref|ZP_06127383.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131] gi|291311208|gb|EFE51661.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131] Length = 671 Score = 815 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 246/709 (34%), Positives = 402/709 (56%), Gaps = 49/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++E+ L++++ +H+ Y+ P I D EYD L +R I P+L S + P + Sbjct: 4 KQEIDELKKQLRHHEYQYHVLDAPEIPDVEYDKLMQRLKEIEAQHPELVTS---DSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V H IP LSL+ +++ E F R+ + + + F E K+DG Sbjct: 61 VGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRDRLK--NHQELTFCCELKLDGL 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKN 196 +++ YE G+ V AA RGDG GE+++A +R I IP L NIP+ +E+RGEV++ + Sbjct: 119 AVSLLYENGELVQAATRGDGTVGENITANVRTIRAIPLRLRGSNIPDRVEIRGEVFMPQK 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQ 254 F ALN++ K +ANPRNAA+G LR+L+P R L F+ +G+G Sbjct: 179 GFEALNEQARKTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGGSLPDTH 238 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 Y+ L + + G PV++ V+ ++ +Y+E++ +R L +DIDG+V KV+ ++Q++ Sbjct: 239 YDRLMQFKAWGLPVSDYVQLRVGHQAVLDFYHEIEQVRPDLGFDIDGVVIKVNSIAIQEE 298 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW + KF ++ T L D++ Q+GRTG +TPVARLEPV + G +++NATLH Sbjct: 299 LGFVSRAPRWATAFKFPAQEQVTLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLH 358 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L + +GD V+++RAG+VIP++V ++V++R D++ FP+ C Sbjct: 359 NADEIERL-----------GVHIGDTVIIRRAGDVIPQIVSVVVDKRPTDSREIVFPTHC 407 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S + R A RCTGGL C AQ+ E LKHFVSR A +++G+G + +D Sbjct: 408 PVCGSDIERVEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQL 461 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E ++ PAD++ L T ++ G S NL D++NK + +L RFI Sbjct: 462 VEKE----YVKTPADLYQLSAGILTGLDRM------GPKSAQNLVDALNKSKQTTLARFI 511 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG A +LA +Y + + A D SL V +G ++A+ +V Sbjct: 512 YALGIREVGEATAANLAAHYTTLE----------AVMTADEESLKTVQDIGHVVAKHVVN 561 Query: 615 FYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F++ P N +E LL + + + + S K +V TG++ + R +A++ + Sbjct: 562 FFREPHNQAVIEDLLTKANIHWPEVKVVNSAEIDSPFAGKTVVLTGSMSVLTRDEAKDKL 621 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA VS +S+KTD++I G+ GSKL KA +LG+++++E + + LL Sbjct: 622 VALGAKVSGSVSKKTDLVIAGEAAGSKLAKANELGIRVIDENELVRLLN 670 >gi|332162521|ref|YP_004299098.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606605|emb|CBY28103.1| DNA ligase [Yersinia enterocolitica subsp. palearctica Y11] gi|325666751|gb|ADZ43395.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860741|emb|CBX71032.1| DNA ligase [Yersinia enterocolitica W22703] Length = 672 Score = 815 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 248/714 (34%), Positives = 406/714 (56%), Gaps = 47/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ ++ D + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAD--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPLAGFEQLNNEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + R G PV++ V+ ++++Y +++ R L +DIDG+V KVD Sbjct: 236 PRSHIQRLMQFRAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++++R DA+ +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+FTL + T ++ G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFTLTAGKLTGLDRM------GPKSAQNLIVALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + +N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLENLRAA----------DIEALKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +V F N +EAL K ++ + + + S K +V TG+L + R +A++ Sbjct: 559 HVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + + Sbjct: 619 RLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLGESS 672 >gi|209963935|ref|YP_002296850.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW] gi|254781401|sp|B6IRF1|DNLJ_RHOCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|209957401|gb|ACI98037.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW] Length = 719 Score = 814 bits (2103), Expect = 0.0, Method: Composition-based stats. Identities = 302/732 (41%), Positives = 431/732 (58%), Gaps = 40/732 (5%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IP+E L+++QA E ++L +EI++H YY P I DS YDAL+ R + FP+L Sbjct: 10 IPVETLTLDQAAAEHAALVREIAHHRALYYGKDAPEIADSAYDALEHRLAGLEARFPELV 69 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 P+ P +G + KV H +P LSL+ + ED+ F+ +I RF K+ + + Sbjct: 70 ---TPDSPTQTVGAAPSAGFGKVRHRVPMLSLDNAFTAEDVDGFVEQIARFLNLKEVDGL 126 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 F EPKIDG +++RYE G AA RGDG GEDV+A +R I IP L P ++E Sbjct: 127 EFVAEPKIDGLSLSLRYENGALAQAATRGDGAEGEDVTANVRTIREIPDRLPAGAPSVLE 186 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK 245 VRGEVY+ + +F ALN G K +ANPRNAA+G LR+L+P+ R L FF + G Sbjct: 187 VRGEVYMVREEFFALNRRQAEAGEKVFANPRNAAAGSLRQLDPSVTAKRPLCFFAYSWGD 246 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE Q+E LQ+++ LGF V R + ++ YY + + R+ LP+DIDG+VYK Sbjct: 247 LSEPLGATQWEALQRLKALGFRVPAQSRLCRSKAELLDYYAGIGAGRAALPFDIDGVVYK 306 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+ LQ++LG R R+PRW +HKF ++A T L I IQ+GRTG LTPVA LEPV +GG Sbjct: 307 VNRLDLQERLGFRTRTPRWATAHKFPAERAQTLLRAITIQVGRTGALTPVAELEPVTVGG 366 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++ ATLHN D I +DIRVGD V+V+RAG+VIP+VV+++ R D+ Sbjct: 367 VVVSRATLHNADEIAR-----------KDIRVGDTVVVQRAGDVIPQVVEVVTERRPADS 415 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 PF FP CP C S VR+ + A RCTGGL C AQ +ERL+HFVSR+AF+IEG Sbjct: 416 APFVFPDHCPECGSAAVREED------GAVSRCTGGLVCPAQAVERLRHFVSRNAFDIEG 469 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +++ F+ + IR PADIFTL+RR+ ++ + GFG SV NL+ +I+ R Sbjct: 470 LGIERIQLFYDQDR----IRSPADIFTLERREAQRLDRLVAMTGFGRKSVENLFRAIDAR 525 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNN------------- 592 R I L+RFIF+LGIR VG A+ LA+ Y S + + + A + Sbjct: 526 RRIPLDRFIFALGIRQVGEATAKLLARTYRSVGPWTERMAAAAAERSANPDEAKKPELVG 585 Query: 593 DDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIG--RHEKNVSSEIENK 650 + + L + +G +A I F+ P N A++ALLKE+ + S + K Sbjct: 586 EAYAELCAIEQIGMSVADDICAFFAEPHNRDALDALLKELEAVEDHVPPPRADGSPVAGK 645 Query: 651 KLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 +VFTGTL+ + R +A+ LGA V+ +S KTD ++VG + GSK KA++LG+ I+ Sbjct: 646 TVVFTGTLETMGRSEAKARAEALGAKVAGSVSGKTDYVVVGADAGSKAAKARELGLTILT 705 Query: 711 EEQFLFLLQQYN 722 E+++L L+ Q Sbjct: 706 EQEWLDLISQPG 717 >gi|123441550|ref|YP_001005536.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166216254|sp|A1JLA4|DNLJ_YERE8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|122088511|emb|CAL11304.1| DNA ligase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 672 Score = 814 bits (2102), Expect = 0.0, Method: Composition-based stats. Identities = 248/714 (34%), Positives = 405/714 (56%), Gaps = 47/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ ++ D + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAD--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPLAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+ V+ ++++Y +++ R L +DIDG+V KVD Sbjct: 236 PRSHIQRLMQFKAWGLPVSERVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++++R DA+ +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+FTL + T ++ G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFTLTAGKLTGLDRM------GPKSAQNLIVALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + +N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLENLRAA----------DIEALKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 +V F N +EAL K ++ + + + S K +V TG+L + R +A++ Sbjct: 559 HVVNFLGEEHNQKVIEALEKVITWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + + Sbjct: 619 RLAALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGESS 672 >gi|261340751|ref|ZP_05968609.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316] gi|288317173|gb|EFC56111.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316] Length = 671 Score = 813 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 246/713 (34%), Positives = 395/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E + +V H +P LSL+ +++ E F R+ + D ++ + E K Sbjct: 58 PTQRVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSD--ALTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV+N V+ ++ ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER D + F Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPDDTRAIEF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLDRM------GPKSAQNVVNALETAKKTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALEKA----------SIDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNREVIGKLLAEGISWPAPVVVNAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL + Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 671 >gi|296104078|ref|YP_003614224.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058537|gb|ADF63275.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 671 Score = 813 bits (2100), Expect = 0.0, Method: Composition-based stats. Identities = 246/714 (34%), Positives = 398/714 (55%), Gaps = 50/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++++ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MDSIEQQITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRDLEAQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E + +V H +P LSL+ +++ E F R+ + D ++ + E K Sbjct: 58 PTQRVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSD--ALTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV+N V+ ++ ++++Y +++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSNRVQLCDSPEAVLAFYRKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER D + F Sbjct: 356 ATLHNADEIDRL-----------GLRIGDKVVIRRAGDVIPQVVNVVQSERPDDTRAIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLDRM------GPKSAQNVVNALEAAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLDALEKA----------SIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F+ N + E +K +P + E+ + S K +V TG+L ++ R A Sbjct: 559 HVFNFFAEESNRDVIGKLLEQGIKWPAPVVVNAEE-IDSPFAGKTVVLTGSLSQLSRDDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 618 KARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|332089820|gb|EGI94921.1| DNA ligase, NAD-dependent [Shigella dysenteriae 155-74] Length = 671 Score = 813 bits (2100), Expect = 0.0, Method: Composition-based stats. Identities = 245/711 (34%), Positives = 397/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P+ R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPSITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVKGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A S I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|51597030|ref|YP_071221.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP 32953] gi|186896113|ref|YP_001873225.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis PB1/+] gi|81638946|sp|Q668M6|DNLJ_YERPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781913|sp|B2K917|DNLJ_YERPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|51590312|emb|CAH21949.1| DNA ligase [Yersinia pseudotuberculosis IP 32953] gi|186699139|gb|ACC89768.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis PB1/+] Length = 670 Score = 813 bits (2100), Expect = 0.0, Method: Composition-based stats. Identities = 244/712 (34%), Positives = 403/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD + ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ + + + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L N+P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLV 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D + +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSQCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L + T ++ G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFQLTAGKLTGLDRM------GPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +E L K VS + + + S K +V TG+L + R +A++ Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KT ++I G+ GSKL KAQ+LG+K+++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670 >gi|183599716|ref|ZP_02961209.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827] gi|188021975|gb|EDU60015.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827] Length = 671 Score = 813 bits (2099), Expect = 0.0, Method: Composition-based stats. Identities = 246/709 (34%), Positives = 394/709 (55%), Gaps = 49/709 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++ L +L+Q++ +H+ Y+ P I D+EYD L AI P+ S + P + Sbjct: 4 KQHLDTLKQQLRHHEYQYHVLDAPEIPDAEYDKLMEELKAIEAEHPEWITS---DSPTQR 60 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + V H IP LSL+ +++ E F R+ + D F E K+DG Sbjct: 61 VGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRDRLK--DQQEQTFCCELKLDGL 118 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 +++ YE G+ V AA RGDG GE++++ +R I IP L NIP +E+RGEV++ + Sbjct: 119 AVSLLYENGELVQAATRGDGTVGENITSNVRTIRAIPLRLTGENIPARVEIRGEVFMPQK 178 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS-EIFAKGQ 254 F ALN+E G K +ANPRNAA+G LR+L+P R L F+ +G+G E Sbjct: 179 GFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGETLPDTH 238 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 YE L + + G PV+ V+ ++ +Y+E++ R TL +DIDG+V K+++ + Q++ Sbjct: 239 YERLMQFKKWGLPVSEYVQLRTGAQAVLDFYHEIEKARPTLGFDIDGVVIKINDIATQEE 298 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +R+PRW + KF ++ T L D++ Q+GRTG +TPVARLEPV + G ++NATLH Sbjct: 299 LGFVSRAPRWATAFKFPAQEQMTLLKDVEFQVGRTGAITPVARLEPVQVAGVTVSNATLH 358 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L + +GD V+++RAG+VIP++V ++ +ER D++ FP+ C Sbjct: 359 NADEIERL-----------GVHIGDTVVIRRAGDVIPQIVSVVESERPADSREIVFPTHC 407 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + +D Sbjct: 408 PVCGSDVERVEGE------AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQL 461 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E ++ PAD++ L T ++ G S NL +++NK ++ +L RFI Sbjct: 462 VEKE----YVKNPADLYQLSAGILTGLDRM------GPKSAQNLVEALNKSKSTTLARFI 511 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 ++LGIR VG A +LA +Y + + D SL V VG ++A+ +V Sbjct: 512 YALGIREVGEATAANLAAHYGTLEALMAA----------DEESLKTVQDVGHVVAKHVVN 561 Query: 615 FYQNPRN----ICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 F++ N ++ ++ + S K +V TG+L ++ R +A++ + Sbjct: 562 FFREEHNQTVIQALIDKANIHWPEAVAVDVSTIDSPFAGKTVVLTGSLSQLTRDEAKDKL 621 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA VS +S+KT ++I G+ GSKL KA +LG+ +++E + + LL+ Sbjct: 622 VALGAKVSGSVSKKTHLVIAGEAAGSKLAKANELGIPVIDENELIRLLE 670 >gi|320014458|gb|ADV98029.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 670 Score = 813 bits (2099), Expect = 0.0, Method: Composition-based stats. Identities = 244/712 (34%), Positives = 403/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD + ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ + + + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L N+P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ + Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D + +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSQCPVCSSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L + T ++ G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFQLTAGKLTGLDRM------GPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +E L K VS + + S K +V TG+L + R +A++ Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEESDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KT ++I G+ GSKL KAQ+LG+K+++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670 >gi|262276434|ref|ZP_06054243.1| DNA ligase [Grimontia hollisae CIP 101886] gi|262220242|gb|EEY71558.1| DNA ligase [Grimontia hollisae CIP 101886] Length = 670 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 262/707 (37%), Positives = 410/707 (57%), Gaps = 46/707 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 +++L SL+ +++YH YY KP + D+EYD + + AI P+L + + P Sbjct: 4 DIQQKLQSLKTQLNYHGHLYYVEDKPELPDAEYDRMMQELLAIEAKHPELVTA---DSPS 60 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + +V H IP LSL+ ++ +L F R+ + F+ EPK+D Sbjct: 61 QRVGGAPLGAFEQVRHEIPMLSLDNAFDDGELEAFEKRLRDRLNTTER--FVFSCEPKLD 118 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194 G +++ YE G V AA RGDG GE+++ +R I +P +L P +EVRGEV++ Sbjct: 119 GLAVSLMYENGVLVQAATRGDGTVGENITHNVRTIRNVPLLLQGEGWPVRLEVRGEVFMP 178 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFAKG 253 K+ F ALN++ I G K +ANPRNAA+G LR+L+P TR L F+ + +G SE F Sbjct: 179 KDGFEALNEKNIKKGEKTFANPRNAAAGSLRQLDPKITATRPLRFYAYSVGVMSEAFGDS 238 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 L++++ G P++ V++ + + +YY ++ + R+ LPY+IDG+V KVD Q+ Sbjct: 239 HVGRLEQLKQWGIPLSPEVKKVDGLENVKAYYQDIAARRNDLPYEIDGVVIKVDNIDTQE 298 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG ++NATL Sbjct: 299 RLGFVARAPRWAIAYKFPAQEEITVLQDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL 358 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I L +++GD V+++RAG+VIP++V ++ + R DA+ FP Sbjct: 359 HNADEIARL-----------GVKIGDTVIIRRAGDVIPQIVSVVESRRPDDAKEVVFPHE 407 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+CQS+V R A RCTGGL C AQ+ E +KHF SR A +I+GLG + ++ Sbjct: 408 CPVCQSQVERVEGE------AVARCTGGLICRAQRKEAIKHFSSRKALDIDGLGDKIVEQ 461 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + E I+ PAD+F L Q T ++ G S NL D+++K + +L RF Sbjct: 462 LIEKE----LIKTPADLFKLTAGQVTMLDRM------GPKSAQNLVDALSKAKETTLPRF 511 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 I+SLGIR VG A +LA ++ +++ + LI V VG I+A+ +V Sbjct: 512 IYSLGIREVGEATAANLANHFFTFEAIREATEE----------QLIEVQDVGVIVAKHVV 561 Query: 614 EFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 F+ N ++ALL P+I + ++N + K +V TGTL ++ R+ A+ + Sbjct: 562 NFFNEEHNKTVIDALLACGITWPAIEQPDENKPQPLAGKTVVLTGTLSQMSRNDAKAALQ 621 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 LGA V+ +S KTD++I G+ GSKL KAQQLG++I++E+ + LL Sbjct: 622 ALGAKVTGSVSAKTDLLIAGEAAGSKLTKAQQLGIEIVDEDGMMRLL 668 >gi|153948204|ref|YP_001400300.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP 31758] gi|170023674|ref|YP_001720179.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis YPIII] gi|190359300|sp|A7FGC2|DNLJ_YERP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781915|sp|B1JFZ0|DNLJ_YERPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|152959699|gb|ABS47160.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758] gi|169750208|gb|ACA67726.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis YPIII] Length = 670 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 244/712 (34%), Positives = 403/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD + ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ + + + F E K Sbjct: 58 PTQRVGAAPLDAFEQVEHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L N+P +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ Sbjct: 236 PRSHIQCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLV 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D + +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSQCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L + T ++ G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFQLTAGKLTGLDRM------GPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +E L K VS + + + S K +V TG+L + R +A++ Sbjct: 559 HVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KT ++I G+ GSKL KAQ+LG+K+++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 670 >gi|238895883|ref|YP_002920619.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae NTUH-K2044] gi|238548201|dbj|BAH64552.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 671 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 247/713 (34%), Positives = 397/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R+ + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + D + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V +T +++YY +++ R L +DIDG+V KVD + Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + Q L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQAT----------IEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N + A + + + S K +V TG+L ++ R A+ Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 E + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 ERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|260598800|ref|YP_003211371.1| NAD-dependent DNA ligase LigA [Cronobacter turicensis z3032] gi|260217977|emb|CBA32625.1| DNA ligase [Cronobacter turicensis z3032] Length = 672 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 253/714 (35%), Positives = 401/714 (56%), Gaps = 49/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R A+ A P+L P+ Sbjct: 1 MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ F R+ + D ++ + E K Sbjct: 58 PTQRVGAAPLTAFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRLKNTD--ALVYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GED++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQTGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + LQ+ + G PV++ +R T ++++Y ++++ R TL +DIDG+V KVD Sbjct: 236 PRSHMARLQQFKAWGLPVSDRIRLVKTPEDVLAFYRQVEADRPTLGFDIDGVVIKVDSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQLTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTQCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S NL ++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNLVTALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + A N L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLE----------ALINASIDDLQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666 + F++ N + L +EV + + + S K +V TG+L ++ R A Sbjct: 559 HVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFAGKTVVLTGSLSQMSRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL + Sbjct: 619 KARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGE 672 >gi|158421773|ref|YP_001523065.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571] gi|190359227|sp|A8IGY0|DNLJ_AZOC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|158328662|dbj|BAF86147.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571] Length = 739 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 314/732 (42%), Positives = 460/732 (62%), Gaps = 30/732 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS +A E ++L QEI+ HD YYQ P+I D++YD L+RR + I FP L Sbjct: 15 VSDLSATEASDEHAALSQEIASHDARYYQEDAPVISDADYDRLRRRYEDIEARFPALKND 74 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + K+G + KV H +P LSL+ ++ E++ +F+ R+ RF + + F Sbjct: 75 ---DSLSRKVGAAPSAKFAKVVHQVPMLSLQNAFSDEEVEEFVARVRRFLNLAESAELAF 131 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEV 187 T EPKIDG ++RYE G V AA RGDG GEDV+A +R I IP L+ +P+II++ Sbjct: 132 TAEPKIDGLSCSLRYEGGVLVRAATRGDGTQGEDVTANVRTIAEIPHRLTGAGVPDIIDI 191 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKT 246 RGEVY+ K DFLALN G+ +ANPRNAA+G LR+L+P +R L FF + G+ Sbjct: 192 RGEVYMGKADFLALNARQEEAGKPVFANPRNAAAGSLRQLDPEITRSRPLRFFAYAWGQA 251 Query: 247 SEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 Q+E++ R G P N + G++++Y ++ + R++L YDIDG+VYK Sbjct: 252 EPGPPGASQHEVVDAFRRFGLPTNPLTIRVTDAAGLLAHYRKIGAERASLGYDIDGVVYK 311 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD +LQ++LG +RSPRW I+HKFA +QA+T + I+IQ+GRTG LTPVA+L PV +GG Sbjct: 312 VDSLALQERLGFVSRSPRWAIAHKFAAEQATTVIEAIEIQVGRTGALTPVAKLTPVTVGG 371 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYI+ + +G+ +R G DIRVGD V+V+RAG+VIP+VV +++++R A Sbjct: 372 VVVSNATLHNEDYIRAIGGNGEEIREGIDIRVGDTVVVQRAGDVIPQVVSVVLDKRPAGA 431 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 + FP CP+C S+ VR+++PKTGK A RCTGGL C AQ +ERL+HFVSR+AF+IEG Sbjct: 432 TAYQFPHHCPVCNSQAVREVDPKTGKQDAVRRCTGGLICPAQAVERLRHFVSRNAFDIEG 491 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG++Q F++ + I PADIF LQ R + S +K+EN G+G S NL+ +I R Sbjct: 492 LGEKQAHAFYEWK----LIAEPADIFRLQARNEQSLSKLENREGWGRTSAQNLFAAIEAR 547 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQE---------INNIIAHN----- 591 R I+L+RFIF+LGIRHVG A+ LA++Y S + + Sbjct: 548 RTIALDRFIFALGIRHVGETNAKRLARHYGSVEALRDAAIGAEMPTEMEEASEETPPTRR 607 Query: 592 -----NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE 646 N+ W + + +G ++A+A+VEF++ P N VE LLKEV+P +S Sbjct: 608 RKPQGNEVWQEMTDIDGIGAVVAEAVVEFFREPHNRQVVEELLKEVTPQ-PLEAVASTSP 666 Query: 647 IENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGV 706 + K +VFTG+L+++ R +A+ +LGA V+ +S KTD+++ G GSKLEKA+ LGV Sbjct: 667 VSGKTVVFTGSLERMTRDEAKAMAERLGAKVAGSVSGKTDLLVAGPGAGSKLEKARSLGV 726 Query: 707 KIMNEEQFLFLL 718 K + E+++ L+ Sbjct: 727 KTITEDEWFDLV 738 >gi|322831833|ref|YP_004211860.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602] gi|321167034|gb|ADW72733.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602] Length = 673 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 251/715 (35%), Positives = 402/715 (56%), Gaps = 50/715 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + +++S L ++ +H+ Y+ P + D+EYD L R + A P+L + + Sbjct: 1 MATIEEQISQLRTQLRHHEYQYHVLDAPEVPDAEYDRLMRELRELETAHPELVTA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R+ + + ++ F E K Sbjct: 58 PTQRVGAAPLSAFEQVRHRVPMLSLDNVFDEESYLAFYKRVQDRLKTAE--ALTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L NIPE +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVQAATRGDGTTGENITANVRTIRAIPLRLHGDNIPERLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F A+NDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEAMNDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + LQ+ + G PV++ VR ++++Y ++++ R +L +DIDG+V K+D Sbjct: 236 PRSHFARLQQFKAWGLPVSDRVRLCTGSEEVLAFYRQVEADRPSLGFDIDGVVVKIDSLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 +Q+ LG AR+PRW + KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 IQETLGFVARAPRWATAFKFPAQEQITLVKDVEFQVGRTGAITPVARLEPVLVAGVMVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV ++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVLDERPEDAREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCT GL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCHSDVERVEGE------AVARCTAGLICGAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E ++ PAD+F L + T ++ G S N+ ++ K + +L Sbjct: 459 IDQLVEKE----YVKTPADLFRLTAGKLTGLDRM------GPKSAQNVVRALEKAKETTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA +Y S + A D SL V VGD++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHYGSVE----------ALKAADIESLKGVQDVGDVVAK 558 Query: 611 AIVEFYQNPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 +V F N ++ + + + S K +V TG+L + R Sbjct: 559 HVVNFLSEEHNQQVIDELLSPEINIHWPEVQVIVPEEIDSPFAGKTVVLTGSLSILSRDD 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMIRLLGE 673 >gi|325576592|ref|ZP_08147310.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC 33392] gi|325161155|gb|EGC73270.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC 33392] Length = 675 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 258/705 (36%), Positives = 406/705 (57%), Gaps = 45/705 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 ++++ +L ++ ++ Y+ P I D+EYD L + A+ A P+L + + P + Sbjct: 12 QQQIDTLRHDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELITA---DSPTQR 68 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 +G + ++ H IP LSL+ ++ E+ F+ RI + + F EPK+DG Sbjct: 69 VGAKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLP-EPLTFCCEPKLDGL 127 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISKN 196 ++I Y G AA RGDG +GED++A IR I IP ++L N P +EVRGEV++ Sbjct: 128 AVSILYVNGILTQAATRGDGATGEDITANIRTIRNIPLQLLMDNPPARLEVRGEVFMPHA 187 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKGQ 254 F LN + + G K +ANPRNAA+G LR+L+P + R L +G+G + Sbjct: 188 GFERLNQQALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGIAEGVDLPNTH 247 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS L YDIDG V K+++ +LQ++ Sbjct: 248 YDRLQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSALGYDIDGTVLKINDIALQEK 307 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +++PRW I++KF ++ TRL D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 308 LGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 367 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L DI +GD V+++RAG+VIP+++ ++ + R DA+P FP C Sbjct: 368 NGDEIERL-----------DIAIGDTVVIRRAGDVIPQIIGVLHDRRPADARPIVFPKTC 416 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C S +VR A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 417 PVCDSAIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQL 470 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 E + PAD+F L T+ T+ + G S N S+ K +N +L RFI Sbjct: 471 VDRE----LVHTPADLFKLD---LTTLTR---LERMGAKSAENALASLEKAKNTTLARFI 520 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A +LA ++ + + A N D +L +VP VG+++A I+ Sbjct: 521 FALGIREVGEATALNLANHFKTLE----------ALQNADLEALQQVPDVGEVVANRILA 570 Query: 615 FYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+ P N+ V L+ + V ++ + + K +V TGTL ++ R++A+ + + Sbjct: 571 FWHEPHNVAVVNDLIAQGVRWETVETKEVAENRFKGKTVVLTGTLTQMGRNEAKALLQDM 630 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 GA VS +S KTD +I GD GSKL KAQ+LGV ++ EE+FL + Sbjct: 631 GAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEEEFLAQI 675 >gi|152971289|ref|YP_001336398.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166215815|sp|A6TC47|DNLJ_KLEP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150956138|gb|ABR78168.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 671 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 246/713 (34%), Positives = 396/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R+ + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + D + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V +T +++YY +++ R L +DIDG+V KVD + Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + Q L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N + A + + + S K +V TG+L ++ R A+ Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|262042032|ref|ZP_06015211.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040623|gb|EEW41715.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 671 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 246/713 (34%), Positives = 396/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R+ + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + D + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V +T +++YY +++ R L +DIDG+V KVD + Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + Q L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVAA 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N + A + + + S K +V TG+L ++ R A+ Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|331653837|ref|ZP_08354838.1| DNA ligase, NAD-dependent [Escherichia coli M718] gi|331048686|gb|EGI20762.1| DNA ligase, NAD-dependent [Escherichia coli M718] Length = 671 Score = 811 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKSKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVYNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669 >gi|237732406|ref|ZP_04562887.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2] gi|226907945|gb|EEH93863.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2] Length = 671 Score = 811 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMCELRELEAQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + D + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTD--KLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGVL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ +++YY++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKEWGLPVSDRVTLCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMV 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIEF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCNSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+FTL + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFTLTAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLE----------ALEAASIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L + R A+ Sbjct: 559 HVFNFFAEESNREVIVQLLAQGIHWPAPVVINAEEIDSPFAGKTVVLTGSLSLMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +T+LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 669 >gi|238792031|ref|ZP_04635667.1| DNA ligase [Yersinia intermedia ATCC 29909] gi|238728662|gb|EEQ20180.1| DNA ligase [Yersinia intermedia ATCC 29909] Length = 670 Score = 811 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 244/712 (34%), Positives = 401/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ ++ P+L + Sbjct: 1 MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRSLEAQHPELITH---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ + F R++ + + + F E K Sbjct: 58 PTQRVGAAPLDAFEQVRHEVPMLSLDNVFDEDSYLAFDKRVHDRLKSAE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L NIP+ +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGENIPQRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLMFFCYGVGLLDGGDL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+N V+ ++++Y +++ R++L +DIDG+V KVD Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVKLCTGSDEVIAFYRQVEQDRTSLGFDIDGVVIKVDSLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFQAQEQITQVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L IR+GD V+++RAG+VIP+VV +++ +R D + F Sbjct: 356 ATLHNADEIERL-----------GIRIGDTVIIRRAGDVIPQVVGVVMEQRPQDTKEIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PQHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L + T ++ G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFELTAGKLTGLDRM------GPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFCNLDNLRAA----------DIDALKSVPDVGEVVAR 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 + F N + AL K +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVRNFLSEEHNQKVIAALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 RLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLGE 670 >gi|324009590|gb|EGB78809.1| DNA ligase, NAD-dependent [Escherichia coli MS 57-2] Length = 671 Score = 811 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 245/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y+E++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|319404500|emb|CBI78105.1| DNA ligase [Bartonella rochalimae ATCC BAA-1498] Length = 725 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 329/720 (45%), Positives = 465/720 (64%), Gaps = 16/720 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 I+ L+ +A EL L +EI+ HD Y++ +P I D+EYDAL RR + I FP+L R+ Sbjct: 6 IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ KIG ++ K H+ P LSL+ +N ED+ +FI RI RF + + +I Sbjct: 66 DSPSS---KIGAPISEKFEKSIHAQPMLSLDNAFNFEDVSEFIERIRRFLRLPETQTIEM 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYE GK V A RG+G GE+V+ R I IP +L N P+IIEVR Sbjct: 123 TAEPKIDGLSLSLRYEAGKLVRAITRGNGSIGENVTTNARTIADIPEILQGNFPDIIEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ + DF LN G+ +ANPRNAA+G LR+L+ +R L FF + G+ S Sbjct: 183 GEVYMGQKDFQLLNINQQKEGKLVFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGEVS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ A+ Q M++K++ GF +N + ++SYY+ ++ R +L YDIDG+VYKV+ Sbjct: 243 EMPAESQIGMMKKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYKVN 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + LQ +LG ARSPRW I+HKF ++A L DIDIQ+GRTG LTPVARL P+ +GG + Sbjct: 303 DLMLQTRLGFVARSPRWAIAHKFPAEKAIAFLEDIDIQVGRTGALTPVARLTPITVGGVV 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ITNA+LHNEDYIKG+ G+++R GRDIRVGD V+++RAG+VIP++VD++V +R D Sbjct: 363 ITNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRSKDTPA 422 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F FP CP+C S VR+ RCTGGL CSAQ +ER+ HFVSR+AF+IEG G Sbjct: 423 FIFPHVCPVCGSHAVREEGET------VRRCTGGLICSAQAIERICHFVSRNAFDIEGFG 476 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 ++Q++FFF ++D IR P DIFTLQRRQ+ S ++EN+ GFG VSV LY++IN RR Sbjct: 477 RKQVEFFFHAQDKTLCIRSPVDIFTLQRRQENSLRRLENMEGFGVVSVRKLYNAINARRE 536 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNII------AHNNDDWLSLIRV 601 ISL RF+F+LGIRH+G A+ LA+ Y +Y F I + N+ W L + Sbjct: 537 ISLSRFLFALGIRHIGEVKAQRLARAYQNYIAFETAAMTAIMPPDKNSEGNEIWKELTNI 596 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 +G + +AI++FYQ N + ALLKEV+P S I K +VFTGTL+ + Sbjct: 597 EGIGSRVGEAIIDFYQEVHNRDVLSALLKEVTPLHEAPIAIDYSPIVEKIIVFTGTLEHM 656 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 R +A+ +LGA S +S+KTD+++ G GSKL KAQQLG+++++E+ +L L+ ++ Sbjct: 657 SRDEAKSLAERLGAKTSNSISKKTDLLVAGFGAGSKLVKAQQLGIEVLDEKNWLKLIDEH 716 >gi|260892973|ref|YP_003239070.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4] gi|260865114|gb|ACX52220.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4] Length = 672 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 256/708 (36%), Positives = 383/708 (54%), Gaps = 45/708 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 LS E+A++ + L +EI+YHD YY P+I D+EYD L A+ AFP+ P Sbjct: 5 LSKEEAKRRIEELRREIAYHDYRYYVLDSPVISDAEYDRLVLELMALEEAFPEFI---TP 61 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 N P ++GG V H +P LSL + EDLR F R+ + + +E Sbjct: 62 NSPTQRVGGAPREGFPTVRHLVPMLSLANAFEPEDLRDFDRRVREALP---GEKVEYVVE 118 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 PKIDG +++ Y G+FV A RGDG GEDV+ +R I +IP + P +IEVRGE Sbjct: 119 PKIDGLAVSLLYRDGEFVQGATRGDGEVGEDVTPNLRTIRSIPLRFLKDAPPLIEVRGEA 178 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 ++ K F+ LN+ G P+ANPRNAA+G +R+L+P R L+FF +G+G I Sbjct: 179 FMPKEAFVKLNERREEAGEPPFANPRNAAAGSIRQLDPRVTAGRKLDFFAYGIGHYEGIS 238 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +E+L + GF VN R ++ ++ Y +S R LPY IDG+V KV+ Sbjct: 239 FSTHWEVLDWLAEQGFRVNEHRRLFSSIDEVIDYVLSWQSKRFDLPYVIDGMVVKVNSLE 298 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG +SPRW ++ KF ++A T+L I+I +GRTG+LTPVA +PV I G ++ Sbjct: 299 SQARLGATMKSPRWAVAFKFPPEEAVTKLRRIEISVGRTGVLTPVAVFDPVQIAGTTVSR 358 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED I+ +DIRVGD ++V +AG+VIP+VV + R + Q F Sbjct: 359 ATLHNEDLIR-----------EKDIRVGDYIVVHKAGDVIPEVVRSLPERRTGNEQIFRM 407 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C ++ +R+ A RC ++C A+ E + HF SR+A +I GLGK Sbjct: 408 PDHCPACGAKTIREEGE------VAVRCPN-ISCPARLKESIFHFASRNAMDIRGLGKVL 460 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ ++ ADI+ L+R ++ G S NL I + ++ L Sbjct: 461 VEQLVDR----GLVKNVADIYFLRREDLLRLERM------GPKSTANLLREIEESKSRGL 510 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R IF LGIRHVG A+ LA+++ S AQ + +P +G IA Sbjct: 511 NRLIFGLGIRHVGERAAKLLAEHFGSIDRLAQATEEEL----------TEIPEIGPKIAA 560 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ F+ PRN+ +E L + E ++ K VFTG L+ R +A+ + Sbjct: 561 SVRAFFAEPRNLEVIERLREAGVRLETTKEVREEGPLKGKVFVFTGALKSFTREEAKALI 620 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +LG V++ +SR+TD ++VG+NPGSK ++A++LG+K++NEE+F LL Sbjct: 621 ERLGGRVASSVSRRTDYVVVGENPGSKYDRARELGIKMLNEEEFKRLL 668 >gi|227356188|ref|ZP_03840577.1| DNA ligase [Proteus mirabilis ATCC 29906] gi|227163652|gb|EEI48568.1| DNA ligase [Proteus mirabilis ATCC 29906] Length = 675 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 246/713 (34%), Positives = 404/713 (56%), Gaps = 49/713 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + ++++ L + +H+ Y+ P I D+EYD L + A+ P+L P+ P Sbjct: 3 QNIQQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELI---TPDSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G + +V H IP LSL+ ++ F R+ + ++ I F E K+ Sbjct: 60 TQRVGALPLTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRERLK--NNEEITFCCELKL 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193 DG +++ YE G+ V AA RGDG +GE+++ +R I IP L NIP IE+RGEV++ Sbjct: 118 DGLAVSLLYENGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251 ++ F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 178 TEKGFEHLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP 237 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Y LQ+ + G PV++ ++ ++ +Y+ + IR L +DIDG+V KVD+ +L Sbjct: 238 TSHYARLQQFKKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIAL 297 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++KF ++ T + D++ Q+GRTG +TPVARL+PV + G +++NA Sbjct: 298 QEELGFVSRAPRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNA 357 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L +R+GD V+++RAG+VIP+VV +I +R +AQ FP Sbjct: 358 TLHNADEIERL-----------GLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFP 406 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CPICQS + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + + Sbjct: 407 TQCPICQSDIERIEGE------AVARCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKII 460 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D + E ++ PAD+F L + + ++ G+ S L +++ K ++ + Sbjct: 461 DQLVEKE----YVKTPADLFRLDEKILSGLERM------GEKSAKKLLNALEKAKSTTFA 510 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI++LGIR VG A L +++S + + + VP VGDI+A+ Sbjct: 511 RFIYALGIREVGEATANGLTAHFVSLEALREANIEALKA----------VPDVGDIVAKH 560 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +V F+Q N ++ L+ ++ + + + K +V TG+L ++ R +A+ Sbjct: 561 VVNFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAGDNPFAGKTVVLTGSLSQLTRDEAK 620 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA VS +S+KTD++I G+ GSKL KA +LG+ +++E++ + LL+Q Sbjct: 621 DRLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGITVIDEDEMIRLLEQ 673 >gi|320180401|gb|EFW55332.1| DNA ligase [Shigella boydii ATCC 9905] Length = 671 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 245/711 (34%), Positives = 396/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A S I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|84686905|ref|ZP_01014789.1| DNA ligase, NAD-dependent [Maritimibacter alkaliphilus HTCC2654] gi|84665102|gb|EAQ11582.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2654] Length = 710 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 294/720 (40%), Positives = 429/720 (59%), Gaps = 13/720 (1%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +E L AR EL+ L ++ + Y+ P + D+ YDA KRR I Sbjct: 1 MTGHSETAVEKLDEAGARAELARLADLLASANTAYHTEDAPEMSDAAYDAAKRRNAEIEA 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FP+L R + P +++G KV H + LSL ++ + + F ++ F Sbjct: 61 RFPELKRD---DSPTDQVGAAPAEGFSKVRHRVRMLSLANAFDDDHVIDFDRQVRAFLGF 117 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 + + FT EPKIDG +++RYE G+ + AA RGDG GE+V+A R I IP+ LS Sbjct: 118 SAEEPLAFTAEPKIDGLSLSLRYENGELMQAATRGDGGEGENVTANARTIDDIPQRLS-G 176 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFF 239 P+++EVRGEVY+S +DF LN+ A G K +ANPRNAA+G LR+L+ R L F+ Sbjct: 177 APDVLEVRGEVYMSHDDFARLNESQSAKGGKTFANPRNAAAGSLRQLDSRITEARPLRFY 236 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ S+ A Q ++K+ LGF N + T + +Y+ ++ R+TL YDI Sbjct: 237 AYAWGELSDPLADTQMGAIEKLADLGFSTNPLTKIVETPEAMFDHYHAIEEQRATLGYDI 296 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKV++ +LQK+LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL Sbjct: 297 DGVVYKVNDLALQKRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLS 356 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +++NATLHNEDYI G D+ G +RGG+DIRVGD V V RAG+VIPKV D+ + Sbjct: 357 PVTVGGVVVSNATLHNEDYIAGRDSKGGDIRGGKDIRVGDWVQVYRAGDVIPKVADVDLT 416 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DA+P+ FP CP C S +R+ + A RCTGG+ C AQ +E+LKHFVSR Sbjct: 417 KRPDDAEPYVFPDTCPECGSEAIRE------EGDAVRRCTGGMICPAQAVEKLKHFVSRS 470 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+IEGLG +Q++ F+ E IR PADIFT RR + K++N G+G+ S L+ Sbjct: 471 AFDIEGLGAKQVEAFYFDE--GLPIREPADIFTFARRDGAALAKLKNRDGWGEKSAAKLF 528 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 ++I +RR I L R IF+LGIRHVG A LA++Y + F + W L+ Sbjct: 529 EAIEERRRIPLNRVIFALGIRHVGENSANLLARHYGDWPTFEAAMTGASPEGGAAWEELL 588 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + VG+ +A ++V + +++ L+ E+ + S + K +VFTGTL+ Sbjct: 589 SIDGVGETMATSLVTTFHQEAERASIDRLVAELDIEPVEAPQTEGSPVAGKTVVFTGTLE 648 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 K+ R +A+ LGA VS +S KTD+++ G GSK +KA +LG++ ++E+ +L L+ Sbjct: 649 KMTRAEAKARAEALGAKVSGSVSAKTDLLVAGPGAGSKAKKAAELGIETIDEDGWLDLIN 708 >gi|146312580|ref|YP_001177654.1| NAD-dependent DNA ligase LigA [Enterobacter sp. 638] gi|190359255|sp|A4WD23|DNLJ_ENT38 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145319456|gb|ABP61603.1| DNA ligase, NAD-dependent [Enterobacter sp. 638] Length = 671 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 244/714 (34%), Positives = 398/714 (55%), Gaps = 50/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MDSIEQQLTQLRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G S +V H +P LSL+ +++ E F R+ + D ++ + E K Sbjct: 58 PTQRVGAAPLASFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSAD--TLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED++A +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGLLVRAATRGDGTTGEDITANVRTIRAIPLTLRGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +NDE G K +ANPRNAA+G LR+L+P R L FF +G+G + Sbjct: 176 LPQKGFEKINDEARRTGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGVL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV+N V+ ++ ++++Y++++ R +L +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPSLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER D + F Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPDDTREIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PAHCPVCGSDVERVEGE------VVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLSAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEQLEKATIDDLQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F+ N + E + +P + E+ + S K +V TG+L ++ R A Sbjct: 559 HVFNFFAEESNRDVIGKLLEEGIHWPAPVVINVEE-IDSPFAGKTVVLTGSLSQMSRDDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + +GA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L L + Sbjct: 618 KARLVAIGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLFGE 671 >gi|157161876|ref|YP_001459194.1| NAD-dependent DNA ligase LigA [Escherichia coli HS] gi|253772690|ref|YP_003035521.1| NAD-dependent DNA ligase LigA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162394|ref|YP_003045502.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606] gi|297517308|ref|ZP_06935694.1| NAD-dependent DNA ligase LigA [Escherichia coli OP50] gi|300928569|ref|ZP_07144093.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1] gi|190359254|sp|A8A2Q7|DNLJ_ECOHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157067556|gb|ABV06811.1| DNA ligase, NAD-dependent [Escherichia coli HS] gi|242378018|emb|CAQ32789.1| DNA ligase [Escherichia coli BL21(DE3)] gi|253323734|gb|ACT28336.1| DNA ligase, NAD-dependent [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974295|gb|ACT39966.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606] gi|253978462|gb|ACT44132.1| NAD-dependent DNA ligase LigA [Escherichia coli BL21(DE3)] gi|300463441|gb|EFK26934.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1] gi|323961212|gb|EGB56824.1| DNA ligase [Escherichia coli H489] gi|323970900|gb|EGB66151.1| DNA ligase [Escherichia coli TA007] gi|332344237|gb|AEE57571.1| DNA ligase, NAD-dependent LigA [Escherichia coli UMNK88] Length = 671 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|238752012|ref|ZP_04613496.1| DNA ligase [Yersinia rohdei ATCC 43380] gi|238709712|gb|EEQ01946.1| DNA ligase [Yersinia rohdei ATCC 43380] Length = 670 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 247/712 (34%), Positives = 408/712 (57%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L+ + +H+ YY P I D+EYD + ++ + P+L + + Sbjct: 1 MESIIQQINQLKTSLRHHEHQYYVLDAPEIPDAEYDRMMQQLRELEAQHPELITN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + +V H +P LSL+ +++ E F R++ + + + F E K Sbjct: 58 PTQRVGGAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV++ V+ ++++Y +++ R+ L +DIDG+V KVD + Sbjct: 236 PRSHIQRLMQFKDWGLPVSDRVKLCTGSDQVIAFYRQVEQDRAELGFDIDGVVIKVDSLN 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R PDA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPPDAKEILF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PDHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+FTL + T ++ G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFTLTAGKLTGLDRM------GPKSAQNLIVALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLANLRAA----------DIDALKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +EAL + ++ + + + S K +V TG+L + R +A++ Sbjct: 559 HVLNFLNEEHNQKVIEALEQVITWPEPQRIITEEIDSPFAGKTVVLTGSLTVLSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+K+++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLIKAQELGIKVIDEAEMILLLGE 670 >gi|332290231|ref|YP_004421083.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179] gi|330433127|gb|AEC18186.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179] Length = 671 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 259/711 (36%), Positives = 398/711 (55%), Gaps = 45/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++ + L ++ YH+ Y+ P+I D+EYD + + + P+L + Sbjct: 1 MDDLQQHIEQLRNDLRYHEYQYHVLDNPVIPDAEYDRMMNQLKRLEAEHPELITD---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ ++ E+ FI RI D F EPK Sbjct: 58 PTQRVGAKPANGFQQIRHELPMLSLDNAFSDEEFFAFIRRIEDRLGVLPD-PFTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG ++I Y GK AA RGDG +GED++A IR I IP L P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGKLTQAATRGDGVTGEDITANIRTIRNIPLQLRTATPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI-F 250 + + F LN+ + G K +ANPRNAA+G LR+L+P R L +G+G + Sbjct: 177 MPHDGFERLNNHALEHGEKTFANPRNAAAGSLRQLDPQVTYHRPLMLNAYGIGIAEGVEL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ LQ ++ +G PVN +R N ++ +Y + RS+L YDIDG V KV+ Sbjct: 237 PNTHYDRLQWLKSIGIPVNKEIRLCNGTTEVLDFYRSIAEKRSSLGYDIDGTVLKVNSIP 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG +R+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQEQLGFISRAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLEPVYVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L DI +GD V+++RAG+VIP+++ ++ + R PDA+P F Sbjct: 357 ATLHNGDEIARL-----------DIAIGDTVIIRRAGDVIPQIIGVVHDRRPPDAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S +VR A RCTGGL C AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTRCPVCDSAIVRIDGE------AVARCTGGLVCEAQRKEGLKHFVSRKAMDIDGVGDKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E + P D+FTL + ++ G+ S SI K + +L Sbjct: 460 IEQLVDRE----YLHTPVDLFTLSKETLMGLERM------GEKSAEKALASIEKAKKTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+F+LGIR VG AR+LA ++ + +N N + L +V +G+++A Sbjct: 510 ARFLFALGIREVGEATARNLANHFHTLENIK----------NATFEQLQQVQDIGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I+ F+Q N VE L+++ V+ + + ++ K +V TGTL ++ R +A+ Sbjct: 560 RIILFWQEQHNRNVVEKLIEQGVTWDDVNATEIADNPLKEKTVVLTGTLTQMTRDQAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + QLG V+ +S KTD +I GDN GSKL+KA+ LGVK++ E+QFL L+ Q Sbjct: 620 LLQLGCKVAGSVSSKTDFVIAGDNAGSKLQKAESLGVKVLTEQQFLDLIPQ 670 >gi|16130337|ref|NP_416906.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. MG1655] gi|89109225|ref|AP_003005.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. W3110] gi|170019306|ref|YP_001724260.1| NAD-dependent DNA ligase LigA [Escherichia coli ATCC 8739] gi|170082020|ref|YP_001731340.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. DH10B] gi|188495579|ref|ZP_03002849.1| DNA ligase, NAD-dependent [Escherichia coli 53638] gi|238901574|ref|YP_002927370.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952] gi|256021895|ref|ZP_05435760.1| NAD-dependent DNA ligase LigA [Escherichia sp. 4_1_40B] gi|300951893|ref|ZP_07165701.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1] gi|300957240|ref|ZP_07169472.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1] gi|301023745|ref|ZP_07187485.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1] gi|312973347|ref|ZP_07787519.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70] gi|2506362|sp|P15042|DNLJ_ECOLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781324|sp|B1XA82|DNLJ_ECODH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781325|sp|B1IX60|DNLJ_ECOLC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149242732|pdb|2OWO|A Chain A, Last Stop On The Road To Repair: Structure Of E.Coli Dna Ligase Bound To Nicked Dna-Adenylate gi|146613|gb|AAA24070.1| DNA ligase (EC 6.5.1.2) [Escherichia coli] gi|1788750|gb|AAC75464.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. MG1655] gi|85675396|dbj|BAA16282.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr. W3110] gi|169754234|gb|ACA76933.1| DNA ligase, NAD-dependent [Escherichia coli ATCC 8739] gi|169889855|gb|ACB03562.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. DH10B] gi|188490778|gb|EDU65881.1| DNA ligase, NAD-dependent [Escherichia coli 53638] gi|238860822|gb|ACR62820.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952] gi|260448502|gb|ACX38924.1| DNA ligase, NAD-dependent [Escherichia coli DH1] gi|299880716|gb|EFI88927.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1] gi|300315993|gb|EFJ65777.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1] gi|300448878|gb|EFK12498.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1] gi|309702699|emb|CBJ02028.1| DNA ligase [Escherichia coli ETEC H10407] gi|310331942|gb|EFP99177.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70] gi|315137042|dbj|BAJ44201.1| NAD-dependent DNA ligase LigA [Escherichia coli DH1] gi|315615662|gb|EFU96294.1| DNA ligase, NAD-dependent [Escherichia coli 3431] gi|323936436|gb|EGB32725.1| DNA ligase [Escherichia coli E1520] gi|323941344|gb|EGB37529.1| DNA ligase [Escherichia coli E482] Length = 671 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 396/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|293410811|ref|ZP_06654387.1| DNA ligase [Escherichia coli B354] gi|291471279|gb|EFF13763.1| DNA ligase [Escherichia coli B354] Length = 671 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|323967844|gb|EGB63256.1| DNA ligase [Escherichia coli M863] gi|327252066|gb|EGE63738.1| DNA ligase, NAD-dependent [Escherichia coli STEC_7v] Length = 671 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|331673883|ref|ZP_08374646.1| DNA ligase, NAD-dependent [Escherichia coli TA280] gi|331069156|gb|EGI40548.1| DNA ligase, NAD-dependent [Escherichia coli TA280] Length = 671 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPTPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|293415682|ref|ZP_06658325.1| DNA ligase [Escherichia coli B185] gi|291433330|gb|EFF06309.1| DNA ligase [Escherichia coli B185] Length = 671 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|325496534|gb|EGC94393.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ECD227] Length = 671 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|332088205|gb|EGI93327.1| DNA ligase, NAD-dependent [Shigella boydii 5216-82] Length = 671 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 396/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +S+ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLKRM------GPKSAQNVVNSLEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A S I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|218700877|ref|YP_002408506.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI39] gi|254781321|sp|B7NPU7|DNLJ_ECO7I RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218370863|emb|CAR18680.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39] Length = 671 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V K++ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKINSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|301022290|ref|ZP_07186186.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1] gi|300397609|gb|EFJ81147.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1] Length = 671 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|197285679|ref|YP_002151551.1| NAD-dependent DNA ligase LigA [Proteus mirabilis HI4320] gi|254781393|sp|B4EZR2|DNLJ_PROMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194683166|emb|CAR43788.1| DNA ligase [Proteus mirabilis HI4320] Length = 675 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 246/713 (34%), Positives = 403/713 (56%), Gaps = 49/713 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 + ++++ L + +H+ Y+ P I D+EYD L + A+ P+L P+ P Sbjct: 3 QNIQQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELI---TPDSP 59 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G + +V H IP LSL+ ++ F R+ + ++ I F E K+ Sbjct: 60 TQRVGALPLTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRERLK--NNEEITFCCELKL 117 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYI 193 DG +++ YE G+ V AA RGDG +GE+++ +R I IP L NIP IE+RGEV++ Sbjct: 118 DGLAVSLLYENGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFM 177 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFA 251 ++ F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 178 TEKGFEHLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP 237 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Y LQ+ + G PV++ ++ ++ +Y+ + IR L +DIDG+V KVD+ +L Sbjct: 238 TSHYARLQQFKKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIAL 297 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I++KF ++ T + D++ Q+GRTG +TPVARL+PV + G +++NA Sbjct: 298 QEELGFVSRAPRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNA 357 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L +R+GD V+++RAG+VIP+VV +I +R +AQ FP Sbjct: 358 TLHNADEIERL-----------GLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFP 406 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CPICQS + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + + Sbjct: 407 TQCPICQSDIERIEGE------AVARCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKII 460 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D + E ++ PAD+F L + + ++ G+ S L +++ K ++ + Sbjct: 461 DQLVEKE----YVKTPADLFRLDEKILSGLERM------GEKSAKKLLNALEKAKSTTFA 510 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI++LGIR VG A L +++S + + + VP VGDI+A+ Sbjct: 511 RFIYALGIREVGEATANGLTAHFVSLEALREANIEALKA----------VPDVGDIVAKH 560 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRH----EKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +V F+Q N ++ L+ ++ + + + K +V TG+L ++ R +A+ Sbjct: 561 VVNFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAGDNPFAGKTVVLTGSLSQLTRDEAK 620 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA VS +S+KTD++I G+ GSKL KA +LG+ +++E++ + LL Q Sbjct: 621 DRLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGITVIDEDEMIRLLDQ 673 >gi|154245706|ref|YP_001416664.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2] gi|254782313|sp|A7IG64|DNLJ_XANP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|154159791|gb|ABS67007.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2] Length = 720 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 302/722 (41%), Positives = 456/722 (63%), Gaps = 27/722 (3%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + IP++ LS +A E +L QEI+ HD YY+ P++ D+EYDAL+ R +AI FP Sbjct: 17 RAIPVDDLSPAEAASEHKALAQEITGHDAAYYREDAPVVSDAEYDALRHRYEAIEERFPG 76 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 L + K+G + KV H +P LSL ++ E++ +F+ R+ RF D+ Sbjct: 77 LRGE---DSLSEKVGAAPSEKFGKVAHKVPMLSLANCFSDEEVVEFVARVKRFLNLGPDD 133 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPE 183 + FT EPKIDG ++ YE G+ AA RGDG GEDV+ +R I IP L +P+ Sbjct: 134 EVAFTCEPKIDGLSCSLHYENGRLTVAATRGDGSQGEDVTQNVRTIADIPERLAGKGVPQ 193 Query: 184 IIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHG 242 I+VRGEVY++K DF ALN A K +ANPRNAA+G LR+L+ + +R L FF + Sbjct: 194 TIDVRGEVYMAKADFEALNARQAAAEEKVFANPRNAAAGSLRQLDSSITASRPLKFFAYA 253 Query: 243 LGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGL 302 G+ S++ A+ Q+ +++ GF N + A G++++Y +++ R+ L YDIDG+ Sbjct: 254 WGEASDLPAETQFGVVEAFARWGFTTNPLMVVAKDAAGLIAHYRSIEAQRALLGYDIDGV 313 Query: 303 VYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVN 362 VYKV+ LQ++LG +RSPRW I+HKF +QA+T L DI+IQ+GRTG LTPVA+L PV Sbjct: 314 VYKVNSLELQRRLGFVSRSPRWAIAHKFPAEQATTVLEDIEIQVGRTGALTPVAKLTPVT 373 Query: 363 IGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERH 422 +GG ++++ATLHNED I +D+R+GD V+V+RAG+VIP+VV +I +R Sbjct: 374 VGGVVVSSATLHNEDEIAR-----------KDVRIGDTVVVQRAGDVIPQVVRVIEEKRP 422 Query: 423 PDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFN 482 ++P+ FP+ CP C S VR+++ K+GK+ A RCTGGL C AQ +ERL+HFVSR+AF+ Sbjct: 423 AGSKPYEFPTHCPACGSHAVREVDTKSGKVDAVRRCTGGLICPAQMVERLRHFVSRNAFD 482 Query: 483 IEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSI 542 IEGLG++Q+ F++ I PADIFTL+ R S ++EN G+G S NL+ +I Sbjct: 483 IEGLGEKQVRAFYE----WGLIASPADIFTLETRNARSLQRLENRDGWGKTSAANLFAAI 538 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEIN------NIIAHNNDDWL 596 +RR ++++RF+F+LGIRHVG A+ L ++Y + + N+ W Sbjct: 539 AERRTVAVDRFVFALGIRHVGETNAKRLMRHYGTVEALEAGALAAVIPGEEHPKGNEAWQ 598 Query: 597 SLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTG 656 +I + +GD++A+A++EF+ PRN V ALLKEV+P + +S + K +VFTG Sbjct: 599 EMIGIDGIGDVVAEAVIEFFGEPRNREVVTALLKEVTPE-PMEQVAAASPVSGKTVVFTG 657 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 +L+K+ R +A+ +LGA V+ +S KT++++ G GSKLEKAQ LGV+++ E+++ Sbjct: 658 SLEKMTRDEAKAMAERLGAKVAGSVSAKTNLVVAGPGAGSKLEKAQALGVQVITEDEWFE 717 Query: 717 LL 718 L+ Sbjct: 718 LV 719 >gi|218548148|ref|YP_002381939.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ATCC 35469] gi|331684067|ref|ZP_08384663.1| DNA ligase, NAD-dependent [Escherichia coli H299] gi|254781331|sp|B7LL73|DNLJ_ESCF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218355689|emb|CAQ88301.1| DNA ligase, NAD(+)-dependent [Escherichia fergusonii ATCC 35469] gi|315298233|gb|EFU57493.1| DNA ligase, NAD-dependent [Escherichia coli MS 16-3] gi|331079019|gb|EGI50221.1| DNA ligase, NAD-dependent [Escherichia coli H299] Length = 671 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|300940348|ref|ZP_07154941.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1] gi|300454839|gb|EFK18332.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1] Length = 671 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISALLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|301648064|ref|ZP_07247828.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1] gi|307139053|ref|ZP_07498409.1| NAD-dependent DNA ligase LigA [Escherichia coli H736] gi|331643032|ref|ZP_08344167.1| DNA ligase, NAD-dependent [Escherichia coli H736] gi|301073835|gb|EFK88641.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1] gi|331039830|gb|EGI12050.1| DNA ligase, NAD-dependent [Escherichia coli H736] Length = 671 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 396/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K ++NPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFSNPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|330013648|ref|ZP_08307732.1| DNA ligase [Klebsiella sp. MS 92-3] gi|328533421|gb|EGF60158.1| DNA ligase [Klebsiella sp. MS 92-3] Length = 671 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 246/713 (34%), Positives = 395/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R+ + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + D + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDH--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V +T +++YY +++ R L +DIDG+V KVD Sbjct: 236 PASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGELTGLDRM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + + Q L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N + A + + + S K +V TG+L ++ R A+ Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|238790828|ref|ZP_04634584.1| DNA ligase [Yersinia frederiksenii ATCC 33641] gi|238721075|gb|EEQ12759.1| DNA ligase [Yersinia frederiksenii ATCC 33641] Length = 670 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 246/712 (34%), Positives = 406/712 (57%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ + + + F E K Sbjct: 58 PTQRVGAAPLDAFDQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+N V+ ++++Y +++ R++L +DIDG+V KVD Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVKLCTGSDQVIAFYRQVEQDRASLGFDIDGVVIKVDSLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++++R DA+ +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PDHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+FTL + T ++ G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFTLTAGKLTGLDRM------GPKSAQNLIVALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRTLDNLRAA----------DIEALKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +E L K +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVLNFLSEEHNQKVIETLEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670 >gi|218690549|ref|YP_002398761.1| NAD-dependent DNA ligase LigA [Escherichia coli ED1a] gi|254781322|sp|B7MY64|DNLJ_ECO81 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218428113|emb|CAR09030.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a] Length = 671 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 245/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y+E++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GLKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|238756322|ref|ZP_04617636.1| DNA ligase [Yersinia ruckeri ATCC 29473] gi|238705475|gb|EEP97878.1| DNA ligase [Yersinia ruckeri ATCC 29473] Length = 674 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 244/715 (34%), Positives = 402/715 (56%), Gaps = 47/715 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L + P+L + + Sbjct: 1 MESIIQQINQLRASLRHHEHQYHVLDAPEIPDAEYDRLMGELRELEAQHPELITA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + V H +P LSL+ +++ E F R++ + + + F E K Sbjct: 58 PTQRVGAAPLDAFEPVRHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ + AA RGDG +GE+++A +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGELIRAATRGDGTTGENITANVRTIHAIPLRLQGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LND+ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNDDARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +E LQ+ + G PV+ V++ ++++Y++++ R+ L +DIDG+V KVD Sbjct: 236 PSSHFERLQQFKAWGLPVSERVQRCTGVDQVIAFYHQVEQDRAHLGFDIDGVVIKVDALD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQMTQVREVEFQVGRTGAITPVARLEPVLVAGVMVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP++V ++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVMVRRAGDVIPQIVGVVIDERPADAREIIF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RC+GGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PEHCPVCGSDIERIEGE------AVARCSGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E + PAD+F L T ++ G S NL ++ K + + Sbjct: 459 IEQLVEKE----YVHNPADLFNLSAGILTGLDRM------GPKSAQNLVAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA ++ + +N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAAHLAAHFRTLENLRAA----------DVEALKAVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR--HEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N ++ L + +S + + S K +V TG+L + R +A++ Sbjct: 559 HVLNFLSEEHNQQVIQQLEQVISWPEPQLIIATEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + + Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIQVIDEAEMIRLLGESES 673 >gi|281179485|dbj|BAI55815.1| DNA ligase [Escherichia coli SE15] Length = 671 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|146615|gb|AAA24071.1| lig peptide [Escherichia coli] Length = 671 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLARFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|157156100|ref|YP_001463741.1| NAD-dependent DNA ligase LigA [Escherichia coli E24377A] gi|193066723|ref|ZP_03047750.1| DNA ligase, NAD-dependent [Escherichia coli E22] gi|194430461|ref|ZP_03062941.1| DNA ligase, NAD-dependent [Escherichia coli B171] gi|209919893|ref|YP_002293977.1| NAD-dependent DNA ligase LigA [Escherichia coli SE11] gi|218554944|ref|YP_002387857.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI1] gi|218696047|ref|YP_002403714.1| NAD-dependent DNA ligase LigA [Escherichia coli 55989] gi|256017438|ref|ZP_05431303.1| NAD-dependent DNA ligase LigA [Shigella sp. D9] gi|260845052|ref|YP_003222830.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str. 12009] gi|260856513|ref|YP_003230404.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str. 11368] gi|260869108|ref|YP_003235510.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str. 11128] gi|293446772|ref|ZP_06663194.1| DNA ligase [Escherichia coli B088] gi|300817349|ref|ZP_07097566.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1] gi|300820921|ref|ZP_07101071.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7] gi|300903139|ref|ZP_07121073.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1] gi|300921341|ref|ZP_07137704.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1] gi|301306250|ref|ZP_07212323.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1] gi|301328910|ref|ZP_07221944.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1] gi|307312589|ref|ZP_07592222.1| DNA ligase, NAD-dependent [Escherichia coli W] gi|309794543|ref|ZP_07688966.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7] gi|331669152|ref|ZP_08370000.1| DNA ligase, NAD-dependent [Escherichia coli TA271] gi|331678399|ref|ZP_08379074.1| DNA ligase, NAD-dependent [Escherichia coli H591] gi|332278439|ref|ZP_08390852.1| NAD-dependent DNA ligase LigA [Shigella sp. D9] gi|190359253|sp|A7ZPL2|DNLJ_ECO24 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781319|sp|B7LCF6|DNLJ_ECO55 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781323|sp|B7M6S1|DNLJ_ECO8A RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781327|sp|B6I4Y8|DNLJ_ECOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157078130|gb|ABV17838.1| DNA ligase, NAD-dependent [Escherichia coli E24377A] gi|192925627|gb|EDV80294.1| DNA ligase, NAD-dependent [Escherichia coli E22] gi|194411494|gb|EDX27836.1| DNA ligase, NAD-dependent [Escherichia coli B171] gi|209913152|dbj|BAG78226.1| DNA ligase [Escherichia coli SE11] gi|218352779|emb|CAU98567.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989] gi|218361712|emb|CAQ99309.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1] gi|257755162|dbj|BAI26664.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str. 11368] gi|257760199|dbj|BAI31696.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str. 12009] gi|257765464|dbj|BAI36959.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str. 11128] gi|291323602|gb|EFE63030.1| DNA ligase [Escherichia coli B088] gi|300404835|gb|EFJ88373.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1] gi|300411729|gb|EFJ95039.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1] gi|300526674|gb|EFK47743.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7] gi|300529975|gb|EFK51037.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1] gi|300838493|gb|EFK66253.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1] gi|300844712|gb|EFK72472.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1] gi|306907512|gb|EFN38016.1| DNA ligase, NAD-dependent [Escherichia coli W] gi|308121999|gb|EFO59261.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7] gi|315061736|gb|ADT76063.1| DNA ligase, NAD(+)-dependent [Escherichia coli W] gi|315256427|gb|EFU36395.1| DNA ligase, NAD-dependent [Escherichia coli MS 85-1] gi|320199974|gb|EFW74563.1| DNA ligase [Escherichia coli EC4100B] gi|323156318|gb|EFZ42476.1| DNA ligase, NAD-dependent [Escherichia coli EPECa14] gi|323159458|gb|EFZ45441.1| DNA ligase, NAD-dependent [Escherichia coli E128010] gi|323177463|gb|EFZ63051.1| DNA ligase, NAD-dependent [Escherichia coli 1180] gi|323184284|gb|EFZ69660.1| DNA ligase, NAD-dependent [Escherichia coli 1357] gi|323377683|gb|ADX49951.1| DNA ligase, NAD-dependent [Escherichia coli KO11] gi|323944634|gb|EGB40701.1| DNA ligase [Escherichia coli H120] gi|324020175|gb|EGB89394.1| DNA ligase, NAD-dependent [Escherichia coli MS 117-3] gi|324118125|gb|EGC12023.1| DNA ligase [Escherichia coli E1167] gi|331064346|gb|EGI36257.1| DNA ligase, NAD-dependent [Escherichia coli TA271] gi|331074859|gb|EGI46179.1| DNA ligase, NAD-dependent [Escherichia coli H591] gi|332100791|gb|EGJ04137.1| NAD-dependent DNA ligase LigA [Shigella sp. D9] Length = 671 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|300717845|ref|YP_003742648.1| DNA ligase [Erwinia billingiae Eb661] gi|299063681|emb|CAX60801.1| DNA ligase [Erwinia billingiae Eb661] Length = 672 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 259/714 (36%), Positives = 404/714 (56%), Gaps = 49/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E + ++++L+ + +H+ Y+ P + D+EYD L R + A P+L + + Sbjct: 1 MESVQDKITALQTTLRHHEYQYHVMDDPEVPDAEYDRLMRELRELEQAHPELVTA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ ++ E F R+ + DD I F E K Sbjct: 58 PTQRVGAAPLGAFEQVRHEVPMLSLDNAFDEESYLAFYKRVQDRLKNTDD--ITFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++A +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGLLVRAATRGDGTTGENITANVRTIRAIPLRLHGENIPSRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + F ALN+E G K +ANPRNAA+G LR+L+P R L FF +G G Sbjct: 176 MPLAGFEALNNEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + LQ+ + G PV++ ++ +T ++++Y +++ R TL +DIDG+V KVD Sbjct: 236 PRSHMARLQQFKAWGLPVSDRIKLCHTAEEVLAFYRQVEQDRPTLGFDIDGVVIKVDSQD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GDRV+++RAG+VIP+VV +I +ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVIIRRAGDVIPQVVGVIESERPDDAREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R G++VA RCTGGL C AQ+ LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVER----VEGEVVA--RCTGGLICGAQRKGALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +S+ K + +L Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNSLEKAKTTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF++SLGI VG A +LA ++ S + D +LI V VG ++A Sbjct: 509 ARFLYSLGISEVGEATAANLAAHFGSLEKIMAA----------DLDALIAVQDVGTVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666 + F N + L++E + E + S K +V TG+L + R +A Sbjct: 559 HLRNFMDEESNREVIRQLVEEAGINWPAVEVVNAAEIDSPFAGKTVVLTGSLTILSRDEA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 KDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMIRLLGE 672 >gi|320196260|gb|EFW70884.1| DNA ligase [Escherichia coli WV_060327] Length = 671 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAVKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|300923365|ref|ZP_07139409.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1] gi|300420362|gb|EFK03673.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1] Length = 671 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKGFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|26248787|ref|NP_754827.1| NAD-dependent DNA ligase LigA [Escherichia coli CFT073] gi|170680446|ref|YP_001744602.1| NAD-dependent DNA ligase LigA [Escherichia coli SMS-3-5] gi|227887457|ref|ZP_04005262.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972] gi|300981618|ref|ZP_07175608.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1] gi|301046300|ref|ZP_07193464.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1] gi|81475373|sp|Q8FFC1|DNLJ_ECOL6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781328|sp|B1LMK5|DNLJ_ECOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|26109193|gb|AAN81395.1|AE016764_77 DNA ligase [Escherichia coli CFT073] gi|170518164|gb|ACB16342.1| DNA ligase, NAD-dependent [Escherichia coli SMS-3-5] gi|227835807|gb|EEJ46273.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972] gi|300301715|gb|EFJ58100.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1] gi|300408962|gb|EFJ92500.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1] gi|307554453|gb|ADN47228.1| DNA ligase [Escherichia coli ABU 83972] gi|315293473|gb|EFU52825.1| DNA ligase, NAD-dependent [Escherichia coli MS 153-1] gi|323977408|gb|EGB72494.1| DNA ligase [Escherichia coli TW10509] Length = 671 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|320185101|gb|EFW59881.1| DNA ligase [Shigella flexneri CDC 796-83] Length = 671 Score = 810 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 245/711 (34%), Positives = 396/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++IVG+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIVGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|209764254|gb|ACI80439.1| DNA ligase [Escherichia coli] Length = 671 Score = 810 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P++CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IEQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|323170330|gb|EFZ55983.1| DNA ligase, NAD-dependent [Escherichia coli LT-68] Length = 671 Score = 810 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 245/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +S+ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNSLEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|15832537|ref|NP_311310.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. Sakai] gi|168768500|ref|ZP_02793507.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486] gi|168778374|ref|ZP_02803381.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076] gi|208813694|ref|ZP_03255023.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045] gi|208821178|ref|ZP_03261498.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042] gi|209399429|ref|YP_002271890.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115] gi|217326968|ref|ZP_03443051.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588] gi|254794365|ref|YP_003079202.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. TW14359] gi|261223146|ref|ZP_05937427.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. FRIK2000] gi|261259301|ref|ZP_05951834.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. FRIK966] gi|291283640|ref|YP_003500458.1| DNA ligase [Escherichia coli O55:H7 str. CB9615] gi|166215595|sp|Q8XBL5|DNLJ_ECO57 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781320|sp|B5YZV8|DNLJ_ECO5E RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|13362753|dbj|BAB36706.1| DNA ligase [Escherichia coli O157:H7 str. Sakai] gi|189003243|gb|EDU72229.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076] gi|189362250|gb|EDU80669.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486] gi|208734971|gb|EDZ83658.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045] gi|208741301|gb|EDZ88983.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042] gi|209160829|gb|ACI38262.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115] gi|209764248|gb|ACI80436.1| DNA ligase [Escherichia coli] gi|209764250|gb|ACI80437.1| DNA ligase [Escherichia coli] gi|209764252|gb|ACI80438.1| DNA ligase [Escherichia coli] gi|209764256|gb|ACI80440.1| DNA ligase [Escherichia coli] gi|217319335|gb|EEC27760.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588] gi|254593765|gb|ACT73126.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. TW14359] gi|290763513|gb|ADD57474.1| DNA ligase [Escherichia coli O55:H7 str. CB9615] gi|320188751|gb|EFW63410.1| DNA ligase [Escherichia coli O157:H7 str. EC1212] gi|320640925|gb|EFX10409.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. G5101] gi|320646206|gb|EFX15133.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. 493-89] gi|320651712|gb|EFX20092.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. H 2687] gi|320657097|gb|EFX24906.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662857|gb|EFX30185.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. USDA 5905] gi|320667743|gb|EFX34654.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. LSU-61] gi|326340214|gb|EGD64018.1| DNA ligase [Escherichia coli O157:H7 str. 1125] gi|326344216|gb|EGD67977.1| DNA ligase [Escherichia coli O157:H7 str. 1044] Length = 671 Score = 810 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P++CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|215487666|ref|YP_002330097.1| NAD-dependent DNA ligase LigA [Escherichia coli O127:H6 str. E2348/69] gi|312967700|ref|ZP_07781915.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75] gi|254781317|sp|B7UGB2|DNLJ_ECO27 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|215265738|emb|CAS10145.1| DNA ligase, NAD(+)-dependent [Escherichia coli O127:H6 str. E2348/69] gi|312287897|gb|EFR15802.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75] Length = 671 Score = 810 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 245/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y+E++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAVKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|324112923|gb|EGC06899.1| DNA ligase [Escherichia fergusonii B253] Length = 671 Score = 810 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HAHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|311278661|ref|YP_003940892.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1] gi|308747856|gb|ADO47608.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1] Length = 671 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 256/713 (35%), Positives = 399/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L++L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MEPIEQQLTALRATLRHHEYLYHVMDAPELPDAEYDRLMRELRELEAKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G E + +V H IP LSL+ +++ E F R+ + D + + E K Sbjct: 58 PTQRVGAEPLGAFSQVRHEIPMLSLDNVFDEESFLAFNKRVQDRLKSSD--KLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED++A +R I IP L ++P +EVRGEV+ Sbjct: 116 LDGLAVSILYENGLLVRAATRGDGTTGEDITANVRTIRAIPLKLRGDDVPARVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +NDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L++ + G PV++ V N+ +++YY +++ R TL +DIDG+V KVD Sbjct: 236 PASHLGRLRQFKSWGLPVSSRVTLCNSPEEVLAYYRKVEEDRPTLGFDIDGVVIKVDSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIEF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A ++EG+G + Sbjct: 405 PAHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVEGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + S Sbjct: 459 IDQLVEKE----YVLTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKETSF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA +Y S + +IA + DD + VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAHYGSLE-------ALIAASIDDLQT---VPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N ++ A + + + S K +V TG+L + R A+ Sbjct: 559 HVFNFFAEESNREVIQQLLAEGIHWPAPVVVKAEEIDSPFAGKTVVLTGSLSLMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L LL + Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEMLRLLGE 671 >gi|323188282|gb|EFZ73575.1| DNA ligase, NAD-dependent [Escherichia coli RN587/1] Length = 671 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|332092973|gb|EGI98039.1| DNA ligase, NAD-dependent [Shigella boydii 3594-74] Length = 671 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|300021787|ref|YP_003754398.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888] gi|299523608|gb|ADJ22077.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888] Length = 712 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 289/708 (40%), Positives = 442/708 (62%), Gaps = 23/708 (3%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 E++ L EI HD+ YY+ P I D++YDAL+RR + A P+L R+ P Sbjct: 23 VEDEIARLSAEIERHDELYYRNDAPEISDADYDALRRRLTQLEDAHPELKRA---GSPSE 79 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 K+G + K+ H +P LSL ++ +D+ F+ R+ RF + + + T EPKIDG Sbjct: 80 KVGSAPVAAFGKIAHDVPMLSLGNAFDDQDVVDFVQRVRRFLNLGESDELEITAEPKIDG 139 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195 I+IRYE G+ V AA RGDG GE+V+A ++ I IP +L ++P++I++RGE+Y+ Sbjct: 140 LSISIRYEGGRLVQAATRGDGAEGENVTANVKTIKDIPHLLVGKDVPDVIDIRGEIYLGH 199 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 DF LN A G K +ANPRNAA+G LR+L+ + R L FF + G S++ + Q Sbjct: 200 KDFEKLNAAQAASGGKVFANPRNAAAGSLRQLDSSITAQRPLQFFAYAWGAASKLPSDTQ 259 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 ++ + G PVN + + ++ YY ++S R+ L YDIDG+VYKV+ Q++ Sbjct: 260 RGVVAAFKSWGLPVNPLMEITRSPDELLDYYRGIESKRAKLDYDIDGVVYKVNRLDYQER 319 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I+HKFA ++A+T L IDIQ+GRTG LTPVA+LEPV +GG +++NATLH Sbjct: 320 LGFVSRSPRWAIAHKFAAERATTVLNKIDIQVGRTGALTPVAKLEPVTVGGVVVSNATLH 379 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NED I +DIR GD V+V+RAG+VIP++V++++++R A P+ FP+ C Sbjct: 380 NEDEISR-----------KDIREGDTVVVQRAGDVIPQIVEVVLDKRPQHAAPYKFPAVC 428 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 PIC S VR+ + + RCTGGL C AQ ERLKHFVSR+AF+IEGLG ++++FF Sbjct: 429 PICGSHAVRESDEEGNAADVVRRCTGGLVCGAQLKERLKHFVSRNAFDIEGLGGEKIEFF 488 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F++ I+ ADIFTL++R Q S + + GF + SV L+ +IN RR + L+RF+ Sbjct: 489 FETGR----IKSAADIFTLEKRDQKSDEPLTKVRGFKETSVNKLFAAINARRTVPLDRFL 544 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAH--NNDDWLSLIRVPLVGDIIAQAI 612 F+LGIRH+G A+ LAK Y +++ ++ I ++ + + + +G+ + A+ Sbjct: 545 FALGIRHIGETTAKDLAKAYGTFEALRAAVDAAIQGGKGSEAYQDIDNIEGIGETVVDAL 604 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 ++F+ N ++ALLKEV+ + + VSS + K +VFTGTL K+ R++A+ + Sbjct: 605 IDFFSEQHNQEQLDALLKEVNVTAFKR-VQVSSPVTGKTVVFTGTLTKLTRNEAKAQAER 663 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LGA VS +S+KTD ++ G GSKL+ A+ LGV +++E+ +L L+ + Sbjct: 664 LGAKVSGSVSKKTDYVVAGAEAGSKLDNARALGVIVLDEDGWLELIGK 711 >gi|74312947|ref|YP_311366.1| NAD-dependent DNA ligase LigA [Shigella sonnei Ss046] gi|123732314|sp|Q3YZD1|DNLJ_SHISS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|73856424|gb|AAZ89131.1| DNA ligase [Shigella sonnei Ss046] gi|323169148|gb|EFZ54825.1| DNA ligase, NAD-dependent [Shigella sonnei 53G] Length = 671 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEVLEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|331648073|ref|ZP_08349163.1| DNA ligase, NAD-dependent [Escherichia coli M605] gi|331042933|gb|EGI15073.1| DNA ligase, NAD-dependent [Escherichia coli M605] Length = 671 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIIINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|91211748|ref|YP_541734.1| NAD-dependent DNA ligase LigA [Escherichia coli UTI89] gi|117624619|ref|YP_853532.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1] gi|218559359|ref|YP_002392272.1| NAD-dependent DNA ligase LigA [Escherichia coli S88] gi|237704934|ref|ZP_04535415.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA] gi|331658566|ref|ZP_08359510.1| DNA ligase, NAD-dependent [Escherichia coli TA206] gi|123084405|sp|Q1R8W1|DNLJ_ECOUT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215402|sp|A1ADS8|DNLJ_ECOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781318|sp|B7MHR5|DNLJ_ECO45 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91073322|gb|ABE08203.1| DNA ligase [Escherichia coli UTI89] gi|115513743|gb|ABJ01818.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1] gi|218366128|emb|CAR03873.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88] gi|226901300|gb|EEH87559.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA] gi|294491726|gb|ADE90482.1| DNA ligase, NAD-dependent [Escherichia coli IHE3034] gi|307626016|gb|ADN70320.1| NAD-dependent DNA ligase LigA [Escherichia coli UM146] gi|315288164|gb|EFU47564.1| DNA ligase, NAD-dependent [Escherichia coli MS 110-3] gi|323949546|gb|EGB45434.1| DNA ligase [Escherichia coli H252] gi|323955668|gb|EGB51426.1| DNA ligase [Escherichia coli H263] gi|331054231|gb|EGI26258.1| DNA ligase, NAD-dependent [Escherichia coli TA206] Length = 671 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LG+R VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGVREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|110642595|ref|YP_670325.1| NAD-dependent DNA ligase LigA [Escherichia coli 536] gi|191174600|ref|ZP_03036093.1| DNA ligase, NAD-dependent [Escherichia coli F11] gi|300997757|ref|ZP_07181842.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1] gi|306814500|ref|ZP_07448662.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101] gi|122958158|sp|Q0TF55|DNLJ_ECOL5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|110344187|gb|ABG70424.1| DNA ligase [Escherichia coli 536] gi|190905126|gb|EDV64772.1| DNA ligase, NAD-dependent [Escherichia coli F11] gi|222034142|emb|CAP76883.1| DNA ligase [Escherichia coli LF82] gi|300304141|gb|EFJ58661.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1] gi|305851894|gb|EFM52346.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101] gi|312947007|gb|ADR27834.1| NAD-dependent DNA ligase LigA [Escherichia coli O83:H1 str. NRG 857C] gi|324011127|gb|EGB80346.1| DNA ligase, NAD-dependent [Escherichia coli MS 60-1] Length = 671 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLHLL 669 >gi|82777805|ref|YP_404154.1| NAD-dependent DNA ligase LigA [Shigella dysenteriae Sd197] gi|309784866|ref|ZP_07679499.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617] gi|123728534|sp|Q32DE2|DNLJ_SHIDS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81241953|gb|ABB62663.1| DNA ligase [Shigella dysenteriae Sd197] gi|308927236|gb|EFP72710.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617] Length = 671 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTILAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGSEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++ +Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLVFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D++ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDSREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|330912204|gb|EGH40714.1| DNA ligase [Escherichia coli AA86] Length = 671 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPEPIIINVEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|170767420|ref|ZP_02901873.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627] gi|170123754|gb|EDS92685.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627] Length = 671 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 241/711 (33%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQKLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y +++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLMQFKEWGLPVSDRVTLCESAEEVLAFYRKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEELGFVARAPRWAVAFKFPAQEQMTYVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATATGLAAYFGTLETLEAA----------SIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLIELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRLL 669 >gi|331663971|ref|ZP_08364881.1| DNA ligase, NAD-dependent [Escherichia coli TA143] gi|331059770|gb|EGI31747.1| DNA ligase, NAD-dependent [Escherichia coli TA143] Length = 671 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|238765534|ref|ZP_04626449.1| DNA ligase [Yersinia kristensenii ATCC 33638] gi|238696249|gb|EEP89051.1| DNA ligase [Yersinia kristensenii ATCC 33638] Length = 670 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 251/712 (35%), Positives = 406/712 (57%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ + + + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKSAE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++A +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNDEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+N V+ ++++Y +++ R+ L +DIDG+V KVD Sbjct: 236 PRSHIQRLMQFKHWGLPVSNRVKLCTGSEQVITFYRQVEQDRAGLGFDIDGVVIKVDSLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R DA+ +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A ++EG+G + Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVEGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+FTL + T ++ G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFTLTAGKLTGLDRM------GPKSAQNLIAALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+I+A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLTNLRAA----------DIEALKSVPDVGEIVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +EAL K +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVLNFLGEEHNQKVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670 >gi|16765747|ref|NP_461362.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167991721|ref|ZP_02572820.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262860|ref|ZP_03162934.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|81522316|sp|Q8ZN89|DNLJ_SALTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|16420966|gb|AAL21321.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241115|gb|EDY23735.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329843|gb|EDZ16607.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247627|emb|CBG25454.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994529|gb|ACY89414.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158979|emb|CBW18492.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913414|dbj|BAJ37388.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222873|gb|EFX47944.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130756|gb|ADX18186.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989355|gb|AEF08338.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 671 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 241/711 (33%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQELLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKSKTTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|218705919|ref|YP_002413438.1| NAD-dependent DNA ligase LigA [Escherichia coli UMN026] gi|293405854|ref|ZP_06649846.1| DNA ligase [Escherichia coli FVEC1412] gi|298381604|ref|ZP_06991203.1| DNA ligase [Escherichia coli FVEC1302] gi|254781326|sp|B7N602|DNLJ_ECOLU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|218433016|emb|CAR13911.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026] gi|284922366|emb|CBG35453.1| DNA ligase [Escherichia coli 042] gi|291428062|gb|EFF01089.1| DNA ligase [Escherichia coli FVEC1412] gi|298279046|gb|EFI20560.1| DNA ligase [Escherichia coli FVEC1302] Length = 671 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|239825842|ref|YP_002948466.1| NAD-dependent DNA ligase LigA [Geobacillus sp. WCH70] gi|239806135|gb|ACS23200.1| DNA ligase, NAD-dependent [Geobacillus sp. WCH70] Length = 670 Score = 808 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 251/717 (35%), Positives = 389/717 (54%), Gaps = 53/717 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A K + L + ++ ++ YY +P + D+EYD L + A+ +PDL Sbjct: 1 MDRQAAMKRIEELRELLNKYNYEYYVLDRPSVPDAEYDRLMQELIALEEQYPDLKTK--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ + KV H P LSL +N DLR F R+ + + + + E Sbjct: 58 DSPSQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVRQEVG----DDVAYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I ++P L LN P +E RGE Sbjct: 114 LKIDGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLP--LRLNEPVTLEARGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 Y+ K F LN++ G + +ANPRNAA+G LR+L+P R+L+ FV+ L E+ Sbjct: 172 YMPKASFERLNEQRRNRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYSLANAEELG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L ++ LGF N R+ ++ + NE RS LPY+IDG+V KVD F Sbjct: 232 IDSHSAALDYLQQLGFKTNPERRRCANIDEVIQFVNEWHEKRSHLPYEIDGIVVKVDSFE 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 QKQLG A+SPRW +++KF ++ T+L+ I++ +GRTG++TP A LEPV + G + Sbjct: 292 QQKQLGATAKSPRWAVAYKFPAEEVVTKLIGIELSVGRTGVVTPTAILEPVRVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED+I+ +DIR+GD V++K+AG++IP+VV+++ + R + PF Sbjct: 352 ATLHNEDFIR-----------QKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR A NIEGLG++ Sbjct: 401 PTHCPECASELVRFDGE------VALRCINP-KCPAQIREGLIHFVSRQAMNIEGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ I AD++ L + Q ++ G+ S TNL +I + SL Sbjct: 454 ISQLFRE----GLIHDVADLYRLTKEQLIRLERM------GEKSATNLLRAIEASKQNSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ A+ LA+++ + + + + +G+ +A Sbjct: 504 ERLLFGLGIRHVGAKAAKVLAEHFGTMDRLQTATKEEL----------MAIHEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 +IV ++ P + L + +V S K +V TG L+ + R++ Sbjct: 554 SIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTVVLTGKLESLSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A+E + QLG V+ +S+ TD++I G + GSKL KAQQL ++I +EE+FL ++Q Sbjct: 614 AKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLNIEIWDEERFLQEIEQNK 670 >gi|161612830|ref|YP_001586795.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|190359282|sp|A9N362|DNLJ_SALPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|161362194|gb|ABX65962.1| hypothetical protein SPAB_00529 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 671 Score = 808 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL CSAQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICSAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|304392246|ref|ZP_07374188.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130] gi|303296475|gb|EFL90833.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130] Length = 716 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 310/718 (43%), Positives = 455/718 (63%), Gaps = 12/718 (1%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 R+++P L+ EQA +EL++L EI+ HD Y+ P I D YD L++R AI FP Sbjct: 7 REIVP-RKLTDEQAAEELAALASEIAEHDARYHNDDAPTISDGAYDTLRKRNTAIEERFP 65 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 DL R + P N +G + K+TH +P LSL+ ++ D+ F + RF K+ Sbjct: 66 DLVRE---DSPSNNVGSPVQSKFDKITHKVPMLSLDNAFDDGDVADFSASVRRFLNWKEG 122 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIP 182 + + FT EPKIDG + +RYE+G+ V AA RGDG GE+V+A R + IPR L N+P Sbjct: 123 DPLTFTAEPKIDGLSLALRYERGELVSAATRGDGQVGENVTANARTVKDIPRKLSGGNVP 182 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 +I+E+RGEVYI K DF ALN EM A G++ Y NPRN A+G LR+L+ +R L FF + Sbjct: 183 DIVEIRGEVYIGKADFAALNVEMEAAGKQLYVNPRNTAAGSLRQLDSRITASRPLKFFAY 242 Query: 242 GLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 G+ S++ A Q+ M+++M GF N + + +V++Y ++ R+ L YDIDG Sbjct: 243 AWGEMSKLPADTQFAMIEQMAAWGFSTNPLTARLESVEALVAHYRTIEESRAGLDYDIDG 302 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKVD+ LQ +LG +R PRW I+HKF + A+T L +I+IQIGRTG L+PVARL+PV Sbjct: 303 VVYKVDDLGLQGRLGFASRVPRWAIAHKFPAELATTILREIEIQIGRTGALSPVARLDPV 362 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG +++NATLHNEDYI G+ ++G+ +R GRD+R+GD V + RAG+VIPKV+D+ +++R Sbjct: 363 TVGGVVVSNATLHNEDYIAGVGSNGEPIREGRDLRIGDTVTIFRAGDVIPKVMDVDLSKR 422 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 PF FP+ CP C S VR ++ KTG+ + RCTGG C AQ +E +KHFVSR+AF Sbjct: 423 TAKE-PFEFPTVCPACGSPAVRPIDEKTGRADSVRRCTGGFICPAQAVEGIKHFVSRNAF 481 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +I+G G +Q + F + + PADIFTL+ R + S ++EN G+G S L+D+ Sbjct: 482 DIDGFGDKQAELFHELGM----VMNPADIFTLRERDKRSLKRLENRDGYGKTSANKLFDA 537 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRV 601 I+ RR I L RFIF+LGIRHVG A+ LA++Y I+ + W+ ++ + Sbjct: 538 IDDRRKIDLHRFIFALGIRHVGEGNAKLLARHYRDADTLLAAIDAAQDREGEAWVEMLDI 597 Query: 602 PLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKI 661 G+ A A+++F +P V+ALL EV+P+ + SS I K +VFTGTL++ Sbjct: 598 DGFGETAATALLDFMADPNRRGVVDALLTEVTPN-PVEQVASSSPIAGKTIVFTGTLEQT 656 Query: 662 QRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 R +A+ +LGA VS +S KTD+++ G+ GSKL+KA +LGV ++E+ +L L+ Sbjct: 657 TRSEAKAVAERLGAKVSGSVSAKTDLLVAGEKAGSKLKKAAELGVDTLDEQGWLDLVA 714 >gi|15802944|ref|NP_288973.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 EDL933] gi|12516784|gb|AAG57530.1|AE005471_7 DNA ligase [Escherichia coli O157:H7 str. EDL933] Length = 671 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y + R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYXXXEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P++CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTYCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWXAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|168238909|ref|ZP_02663967.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734182|ref|YP_002115493.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|254781415|sp|B4TQF8|DNLJ_SALSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194709684|gb|ACF88905.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288317|gb|EDY27698.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 671 Score = 808 bits (2086), Expect = 0.0, Method: Composition-based stats. Identities = 242/712 (33%), Positives = 394/712 (55%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEMIRLLD 670 >gi|238759468|ref|ZP_04620632.1| DNA ligase [Yersinia aldovae ATCC 35236] gi|238702365|gb|EEP94918.1| DNA ligase [Yersinia aldovae ATCC 35236] Length = 670 Score = 808 bits (2086), Expect = 0.0, Method: Composition-based stats. Identities = 246/710 (34%), Positives = 401/710 (56%), Gaps = 47/710 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELVTN---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ + + + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKSVE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++A +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPLAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + L + + G PV++ V+ ++++Y +++ R+ L +DIDG+V KVD+ Sbjct: 236 PRSHIARLMQFKAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R D Q F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDTQEIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PEHCPVCGSDIERIEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+FTL + T ++ G S NL ++ K + + Sbjct: 459 IEQLVEKQ----YVENPADLFTLTAGKLTGLDRM------GPKSAQNLIVALEKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L V VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNLANLRAA----------DIDALKSVQDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +EAL + +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVMNFLNEEHNQKVIEALEQVISWPEPQQIVVEEIDSPFAGKTVVLTGSLTMLSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLL 668 >gi|238912842|ref|ZP_04656679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 671 Score = 808 bits (2086), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 E L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLERLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGINVIDEAEMIRLL 669 >gi|293391716|ref|ZP_06636050.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952250|gb|EFE02369.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans D7S-1] Length = 671 Score = 808 bits (2086), Expect = 0.0, Method: Composition-based stats. Identities = 251/707 (35%), Positives = 399/707 (56%), Gaps = 45/707 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L + + +H+ Y+ P I DSEYD L + A+ P+L + + P Sbjct: 5 IQQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTA---DSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++ H IP LSL+ ++ E+ F+ RI + F EPK+DG Sbjct: 62 RVGARPLSEFAQIRHEIPMLSLDNAFSNEEFFAFVKRIQDRLALVP-EPLTFCCEPKLDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 ++I Y G AA RGDG +GED++ IR I IP ++L+ N P +EVRGEV++ Sbjct: 121 LAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPH 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKG 253 F LN+ + G K +ANPRNAA+G LR+L+P + R L + +G + Sbjct: 181 AGFERLNERALQHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVELPPT 240 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E LQ ++ +G PVNN ++ + ++++Y + + RS+L YDIDG V K+++ +LQ+ Sbjct: 241 HFERLQWLKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQQ 300 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +++PRW I++KF ++ T L +++ Q+GRTG +TPVA+L+PV + G ++NATL Sbjct: 301 RLGFISKAPRWAIAYKFPAQEELTELNEVEFQVGRTGAITPVAKLKPVFVAGVTVSNATL 360 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L+ I +GD V+++RAG+VIP+++ ++ + R DA+ FP+ Sbjct: 361 HNGDEIERLN-----------IAIGDTVIIRRAGDVIPQIIGVVHDRRPADARQIVFPTE 409 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S +VR A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 410 CPVCGSLIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQ 463 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E I PAD+F L T + + G S N S+ K +N +L RF Sbjct: 464 LVDRE----LIHTPADLFKL------DLTTLSRLERMGPKSAENALTSLEKAKNTTLARF 513 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG A +LA ++ + + A N D L +VP VG+++A I Sbjct: 514 IFALGIRDVGEATALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVVANRIF 563 Query: 614 EFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ N+ VE L+ + V ++ + + K +V TGTL ++ R+ A+ + Q Sbjct: 564 VFWHEAHNVAVVEDLIAQGVHWETVDVQEVKENPFKGKTVVLTGTLSQMGRNDAKALLQQ 623 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA VS +S KTD +I G+ GSKL KA +LGV++++EE+FL + Sbjct: 624 LGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFLGWIN 670 >gi|204929538|ref|ZP_03220612.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321257|gb|EDZ06457.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 671 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEMIRLL 669 >gi|148257407|ref|YP_001241992.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+)) [Bradyrhizobium sp. BTAi1] gi|166215399|sp|A5EPJ2|DNLJ_BRASB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146409580|gb|ABQ38086.1| DNA ligase (Polydeoxyribonucleotide synthase (NAD+)) [Bradyrhizobium sp. BTAi1] Length = 716 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 303/722 (41%), Positives = 452/722 (62%), Gaps = 14/722 (1%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K ++ + + L+ QA+ E L E+ HD YYQ P I D+EYD L+RR +AI Sbjct: 6 KPKKPVDVAELTKAQAKVEWKRLALELEVHDRLYYQDDAPKISDAEYDELRRRFNAIETR 65 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L SE P K+G + KV H++P LSL+ + ED+R F+ RI RF + Sbjct: 66 FPELVSSE---SPSQKVGASPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIARFLKLA 122 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 DD I F+ EPKIDG +++RYE G+ V AA RGDG GEDV+A IR + +P+ L N Sbjct: 123 DDR-IDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLKDVPQKLHGRN 181 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P++ EVRGEVY++K FLALN+ G +ANPRN+A+G LR+ +P +R L FF Sbjct: 182 WPDVCEVRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPAITASRPLGFF 241 Query: 240 VHGLGKTSEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 + G+ S + Q M++ GF N R ++ +++++ ++ R+ L YD Sbjct: 242 AYAWGEISGTPPAETQTGMIKWFEQCGFTTNPLTRLCHSVEELIAFHRSIEEQRAELDYD 301 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKVD Q++LG +R+PRW I+HKF ++A T L DI+IQ+GRTG LTPV +L Sbjct: 302 IDGVVYKVDRIDWQERLGFVSRTPRWAIAHKFPAERAMTVLKDIEIQVGRTGSLTPVGKL 361 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GG ++ N TLHNEDYIKG+ G+V+R GRDIR+GD V+++RAG+VIP+VVD+++ Sbjct: 362 EPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVI 421 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 ++R A+PF P CP V TG+ + RCTG AC Q++E LK F SR Sbjct: 422 DKRPAQARPFHLPKTCPCPLHTDVVREETATGEEGSRARCTGEFACPYQKIEHLKLFASR 481 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 AF+I+GLG++Q+ FFF+ ++ PADIFTLQ+R + K+E I G+G+ SV NL Sbjct: 482 RAFDIDGLGEKQIAFFFEQ----GWVKEPADIFTLQKRN--AGLKLEEIEGYGETSVRNL 535 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 +++I+ RR I+LERFI++LG+RHVG A +LA+ Y S+ F + + A + + + Sbjct: 536 FNAIDARREIALERFIYALGMRHVGETTALALARGYGSWDAFHEACLKVAAGDEEAIAEM 595 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 + +GD + +++ ++ N VE L +EV + + S I K +VFTGTL Sbjct: 596 DALDQIGDTVIKSVAAYFAEDHNRGIVERLTQEVKI-LDAEKPKRHSPIATKTVVFTGTL 654 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +K+ R +A+ +LGA VS +S+KTD ++ G GSKL++AQ+ GV+++ E+++L L+ Sbjct: 655 EKMTRDEAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKEAQKHGVQVLTEDEWLQLI 714 Query: 719 QQ 720 + Sbjct: 715 AE 716 >gi|296445905|ref|ZP_06887856.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b] gi|296256573|gb|EFH03649.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b] Length = 713 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 288/715 (40%), Positives = 447/715 (62%), Gaps = 23/715 (3%) Query: 3 KRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAF 62 +R+ P+ LS +A+ E S L +EI+ +D YYQ P I D+EYDAL++R +A+ AF Sbjct: 15 ERERPPVAELSPRRAKLEHSRLAEEIAEYDRRYYQEDDPAISDAEYDALRQRYEALEKAF 74 Query: 63 PDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKD 122 P+L +G K+ H + LSL ++ E++ +F+ R+ RF D Sbjct: 75 PELGGDA---SLTKTVGAAPAEKFAKIRHVVRMLSLGNVFADEEVHEFVARVRRFLNFSD 131 Query: 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-I 181 + FT EPKIDG ++RYEKG+ V AA RGDG GED++A IR + IP+ L + I Sbjct: 132 AAPLLFTAEPKIDGLSCSLRYEKGELVSAATRGDGEEGEDITANIRTLEEIPQRLRGDVI 191 Query: 182 PEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFV 240 PE++E+RGEVY+ + DF ALN G+ +ANPRN+A+G LR+L+P +R L FF Sbjct: 192 PEVLEIRGEVYMRREDFFALNQRQAEAGKPLFANPRNSAAGSLRQLDPNVTASRPLRFFA 251 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 +G G+ S + A Q M+Q G N + + ++++Y ++++R+TL YDID Sbjct: 252 YGWGEVSVMPADTQLGMVQAFASFGLATNPLTQLCGSAEELLAHYRNIEALRATLGYDID 311 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKVD+ LQ +LG +R+PRW ++HKF +QA T + DI+I +GRTG LTP+ARLEP Sbjct: 312 GVVYKVDDIGLQIRLGFVSRAPRWAVAHKFPAEQAKTIVRDIEINVGRTGALTPIARLEP 371 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GG +++NATLHNED I +DIR+GD V+V+RAG+VIP++V++++++ Sbjct: 372 VTVGGVVVSNATLHNEDEIAR-----------KDIRIGDTVVVQRAGDVIPQIVEVVLDK 420 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R A P+ FP CP C S +R+++ K G RCTG L C AQ +ERLKHF SR+A Sbjct: 421 RPEGATPYVFPHECPACGSAALREIDEK-GVEDVVRRCTGSLVCPAQAIERLKHFASRNA 479 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +IEGLG +Q+++FF +R ++IFTL R + S TK+EN G+G+ SV NL+ Sbjct: 480 MDIEGLGDKQIEYFFTD----GLVRTASEIFTLAERDRASLTKLENKEGYGETSVRNLFA 535 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 +I+ RR + + RF+++LGIRHVG AR LA+++ + + ++ A ++ + Sbjct: 536 AIDARRTVPINRFLYALGIRHVGETNARRLARHFPDFASL-RDTAREAAPGSEARERIES 594 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 + +G ++A+A+ +F+ P N ++ALL VS +N S + K +VFTG L++ Sbjct: 595 IEGIGGVVAEALHDFFAEPHNEREIDALLAHVSLEPMPTIENA-SPVAGKTVVFTGALER 653 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 + R +A+ + GA +S +S+KTD+++ G GSKL KA++LGV++++EE++ Sbjct: 654 LTREEAKAQAERFGAKISGSVSKKTDLVVAGPGAGSKLAKAKELGVEVISEEEWF 708 >gi|197247622|ref|YP_002147380.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|254781407|sp|B5F0F5|DNLJ_SALA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|197211325|gb|ACH48722.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 671 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 242/712 (33%), Positives = 393/712 (55%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLD 670 >gi|168261543|ref|ZP_02683516.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349337|gb|EDZ35968.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 671 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|161502427|ref|YP_001569539.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|190359281|sp|A9MIG0|DNLJ_SALAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160863774|gb|ABX20397.1| hypothetical protein SARI_00461 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 671 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 247/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R A+ PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRALEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVRAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++++Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLAFYHNVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIDRL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATIF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALQAASIDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNREVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669 >gi|207857840|ref|YP_002244491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|254781409|sp|B5R3V4|DNLJ_SALEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206709643|emb|CAR33993.1| DNA ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 671 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + V S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEVDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|315634861|ref|ZP_07890143.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393] gi|315476413|gb|EFU67163.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393] Length = 671 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 253/707 (35%), Positives = 400/707 (56%), Gaps = 45/707 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L + + YH+ Y+ P I DSEYD L + A+ P+L + + P Sbjct: 5 IQQQIDDLRKTLRYHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELITA---DSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++ H +P LSL+ ++ E+ F+ RI + F EPK+DG Sbjct: 62 RVGARPLSEFAQIKHELPMLSLDNAFSDEEFLAFVKRIQDRLVLVP-EPLTFCCEPKLDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 ++I Y G AA RGDG +GED++ IR I IP ++L+ N P +EVRGEV++ Sbjct: 121 LAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPH 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKG 253 + F LN+ + G K +ANPRNAA+G LR+L+P + R L F + +G I Sbjct: 181 DGFERLNERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQGIDLPPT 240 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E LQ ++ +G PVN+ +R + ++++Y M RS+L YDIDG V KV++ LQ+ Sbjct: 241 HFERLQWLKSIGVPVNSEIRLCDGVENVLNFYRTMMEKRSSLGYDIDGTVLKVNDIELQQ 300 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+L+PV + G ++NATL Sbjct: 301 RLGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNATL 360 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L+ I +GD V+++RAG+VIP+++ ++ + R +A+ FP+ Sbjct: 361 HNGDEIERLN-----------IAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQIVFPTR 409 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S +VR A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 410 CPVCDSLIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGAKLIEQ 463 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L T+ T+ + G S N S+ K ++ +L RF Sbjct: 464 LVDRE----LVHTPADLFKLD---LTTLTR---LERMGPKSAENALASLEKAKHTTLARF 513 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG A +LA ++ + + A N D L +VP VG+++A I Sbjct: 514 IFALGIRDVGEATALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVVANRIF 563 Query: 614 EFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ N+ V L+ + V + + + K +V TGTL ++ R+ A+ + Q Sbjct: 564 VFWREEHNVAVVNDLIAQGVHWETVEVQDVKENPFKGKTVVLTGTLSQMGRNDAKALLQQ 623 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA VS +S KTD +I G+ GSKL KA +LGV++++EE+FL + Sbjct: 624 LGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFLAWVN 670 >gi|317491275|ref|ZP_07949711.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920822|gb|EFV42145.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 678 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 246/703 (34%), Positives = 387/703 (55%), Gaps = 52/703 (7%) Query: 25 EQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNL 84 + +H+ Y+ P I D+EYD L R A+ P+L P+ P ++G Sbjct: 17 RTALRHHEYQYHVLDAPEIPDAEYDRLMRELRALEEQHPELI---TPDSPTQRVGAAPLS 73 Query: 85 SLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYE 144 + +V H +P LSL+ +++ E F R++ + + + F E K+DG +++ YE Sbjct: 74 AFSQVRHEVPMLSLDNVFDDESYLAFDKRVHDRLKTAE--PLTFCCELKLDGLAVSLLYE 131 Query: 145 KGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALND 203 G V A RGDG +GED++A ++ I IP L NIP +EVRGEV++ F A+N+ Sbjct: 132 DGVLVRGATRGDGTTGEDITANVKTIRAIPLRLQGDNIPRRVEVRGEVFMPLAGFEAMNE 191 Query: 204 EMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEMLQKM 261 E K +ANPRNAA+G LR+L+P R L FF +G+G Y LQ+ Sbjct: 192 EARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLMDGGELPASHYARLQQF 251 Query: 262 RCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 + G PV++ V++ ++ +Y +++ R TL +DIDG+V KVD +Q+QLG AR+ Sbjct: 252 KAWGLPVSDRVKRCTGSDEVLKFYRQVEQERPTLGFDIDGVVIKVDSIEIQEQLGFVARA 311 Query: 322 PRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKG 381 PRW + KF ++ T + ++ Q+GRTG +TPVARLEPV + G +++NATLHN D I Sbjct: 312 PRWATAFKFPAQEQMTVVNGVEFQVGRTGAITPVARLEPVLVAGVIVSNATLHNADEIDR 371 Query: 382 LDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRV 441 L +R+GD V+V+RAG+VIP+VV ++ +R +AQ FP CP+C S V Sbjct: 372 L-----------GLRIGDTVIVRRAGDVIPQVVGVVEAQRPENAQEIVFPQHCPVCGSDV 420 Query: 442 VRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPA 501 R A RCTGGL C AQ+ E LKHFVSR A +++G+G + ++ + E Sbjct: 421 ERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIEQLVEKE--- 471 Query: 502 FSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRH 561 ++ PAD++ L T ++ G S TNL +++ K + +L RF+++LGIR Sbjct: 472 -YVKTPADLYRLTAGILTGLDRM------GPKSATNLVNALAKSKETTLARFLYALGIRE 524 Query: 562 VGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRN 621 VG A +LA ++ S + A D +L V VG+++A+ + F N Sbjct: 525 VGEATAANLAAHFGSLE----------ALREADVEALKSVQDVGEVVAKHVRHFLGEEHN 574 Query: 622 ICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGA 675 ++ + +P + E+ + S K +V TG+L + R +A++ + LGA Sbjct: 575 QKVIDELISDEIGIHWPAPQVIVAEE-IDSPFAGKTVVLTGSLSLMPRDEAKDRLAALGA 633 Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 634 KVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLL 676 >gi|302390293|ref|YP_003826114.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646] gi|302200921|gb|ADL08491.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646] Length = 672 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 251/716 (35%), Positives = 387/716 (54%), Gaps = 48/716 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + +A + L + I+YH+ YY Y P+I D+EYD L R+ + + FP+L P Sbjct: 1 MDRSEAEARIKELRELINYHNRQYYVYDNPVISDAEYDKLMRQLEKLEKQFPELI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE +V H +P +SL ++ +L+ F R+ + + + +E Sbjct: 58 DSPSQRVGGEPLPYFTQVVHRVPMMSLANAFDSGELKDFHRRVTEAVG----SEVQYVVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188 PKIDG ++I YE G F AA RGDG GEDV+ ++ I ++P L P ++EVR Sbjct: 114 PKIDGLAVSITYENGIFKTAATRGDGEVGEDVTQNVKTIKSVPLSLDFPPDKRPAVLEVR 173 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+ K DF LN+E G +ANPRNAA+G LR+L+P R L +++GLG Sbjct: 174 GEVYLPKEDFRKLNEEREEQGLPLFANPRNAAAGSLRQLDPKVTAKRPLAVYIYGLGYAE 233 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 I + YE+LQ + +G VN V + F ++ Y R LPY+IDG+V KV+ Sbjct: 234 GIEFETHYEVLQFFKRIGLRVNPHVVLFDRFQDVIDYCMSWNEKRHDLPYEIDGMVIKVN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q LG A+SPRW I++KF +Q T + DI +++GRTG+LTP A LEPV + G+ Sbjct: 294 SLKQQGILGATAKSPRWAIAYKFPAEQKKTVIKDIIVRVGRTGVLTPTAILEPVRVAGST 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNEDYI+ +DI++GD V++ +AG+VIP+VV+++ +R + Sbjct: 354 VSKATLHNEDYIR-----------EKDIKIGDTVIIHKAGDVIPEVVEVVKEKRTGKERD 402 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP C S VR AA+RCT C AQ ++HF SRDA +I GLG Sbjct: 403 FEMPHRCPECGSEAVRLPGE------AAYRCTNSTGCPAQIRRSIEHFASRDAMDIRGLG 456 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + I+ AD++ L+R ++ G+ S NL +I + + Sbjct: 457 SAIVSLLISQ----GLIKDAADLYYLKREDLVPLERM------GEKSAANLLAAIEESKK 506 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L+R I++LGI VG+ A LA+ + S + + + LI+VP +GD Sbjct: 507 RPLDRLIYALGIPFVGSRTASLLAEAFSSIDDLQKA----------KYEDLIKVPEIGDK 556 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 IAQ+I+ F++ + + L + + ++ V TGTL+K R +A Sbjct: 557 IAQSILAFFRQEQTNDLISRLRAAGVNMEAQKKAEGPRPLDGLTFVLTGTLEKYTRQQAT 616 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 E + +LG V+ +S+KTD ++VG +PGSK E A +LG+KI+NE +F L++++ Sbjct: 617 ELIEKLGGRVTGSVSKKTDYVVVGKDPGSKYENALKLGIKILNEGEFEELIEKWKA 672 >gi|168466836|ref|ZP_02700690.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630762|gb|EDX49354.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 671 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAVKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|82544871|ref|YP_408818.1| NAD-dependent DNA ligase LigA [Shigella boydii Sb227] gi|123741957|sp|Q31Y68|DNLJ_SHIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|81246282|gb|ABB66990.1| DNA ligase [Shigella boydii Sb227] Length = 671 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKLAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|329297490|ref|ZP_08254826.1| NAD-dependent DNA ligase LigA [Plautia stali symbiont] Length = 672 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 252/712 (35%), Positives = 401/712 (56%), Gaps = 49/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + ++++++L + +H+ Y+ P I D+EYD L R + A PDL P+ Sbjct: 1 MTSVQEQITALRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELESAHPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ ++ F R+ + D+ + + E K Sbjct: 58 PTQRVGAAPLATFEQVRHEVPMLSLDNTFDEAGFLAFNKRMQDRLKSTDN--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++A +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYENGLLVRAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 ++++ F LN+E G K +ANPRNAA+G LR+L+P R L FF +G G Sbjct: 176 MTESGFEKLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 ++ LQ+ + G PV++ +R +T ++++Y +++ R +L +DIDG+V KVD + Sbjct: 236 PASHWQRLQQFKAWGLPVSDRIRLVHTADEVLAFYRQVEQDRPSLGFDIDGVVIKVDSQA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER DA+ F Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPADAREIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S V A RCTGGL C AQ+ E LKHFVS A +++G+G + Sbjct: 405 PSHCPVCGSDVESVEGE------AVTRCTGGLICGAQRKEALKHFVSHRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E ++ PAD+F L + T ++ G S N+ D++ K + +L Sbjct: 459 IDQLVEKE----YVKTPADLFRLTAGKLTGLDRM------GPKSAQNVVDALEKAKLTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +LI V VG ++A Sbjct: 509 PRFLYALGIREVGEATAANLANHFGELEKVM----------NADLDALIAVQDVGKVVAA 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F + N + L EV + + S K +V TG+L ++ R A Sbjct: 559 HVRNFMEEESNREVIRQLTDEVGVHWPAVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 619 KARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670 >gi|157144662|ref|YP_001451981.1| NAD-dependent DNA ligase LigA [Citrobacter koseri ATCC BAA-895] gi|166215574|sp|A8ADI2|DNLJ_CITK8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157081867|gb|ABV11545.1| hypothetical protein CKO_00382 [Citrobacter koseri ATCC BAA-895] Length = 671 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 247/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + D + + E K Sbjct: 58 PSQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSGD--KLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G + AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLISAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPEAVLDFYHKVEEDRPTLGFDIDGVVIKVNSMA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVEF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIDELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + S K +V TG+L + R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGIHWPAPIVVNADEIDSPFAGKTIVLTGSLSLMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + L LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRLL 669 >gi|238799224|ref|ZP_04642672.1| DNA ligase [Yersinia mollaretii ATCC 43969] gi|238716921|gb|EEQ08789.1| DNA ligase [Yersinia mollaretii ATCC 43969] Length = 670 Score = 806 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 250/712 (35%), Positives = 408/712 (57%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L S + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ ++ + + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++A +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV++ V+ ++++Y +++ R++L +DIDG+V KVD+ Sbjct: 236 PRSHIQRLMQFKAWGLPVSHRVKLCTGSEQVIAFYRQVEQDRASLGFDIDGVVIKVDDLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R DAQ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAQEILF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A ++EG+G + Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVEGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L + T ++ G S NL +++K + + Sbjct: 459 IEQLVEKQ----YVENPADLFELTAGKLTGLDRM------GPKSAQNLIVALDKAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D +L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNMANLRAA----------DIDALKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +EAL K +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVLNFLSEEHNQKVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 RLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670 >gi|168243193|ref|ZP_02668125.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449589|ref|YP_002046491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|254781411|sp|B4TCF6|DNLJ_SALHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194407893|gb|ACF68112.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337689|gb|EDZ24453.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 671 Score = 806 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|113868039|ref|YP_726528.1| NAD-dependent DNA ligase [Ralstonia eutropha H16] gi|123133949|sp|Q0KA11|DNLJ_RALEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|113526815|emb|CAJ93160.1| NAD-dependent DNA ligase [Ralstonia eutropha H16] Length = 709 Score = 806 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 256/721 (35%), Positives = 387/721 (53%), Gaps = 54/721 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P L E A K ++ L E+ H+ YY P I D+EYDAL A+ P+L Sbjct: 15 PAGPLPPEAAAKRVAWLRDELDRHNYQYYVLDAPTIPDAEYDALFSELQALELEHPEL-- 72 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 + P+ P ++GGE + V H +P LSL + +D+ F R + + Sbjct: 73 -QTPDSPTQRVGGEPLSAFDSVRHRVPMLSLNNGFADDDVLNFDRRCAQGLGRTAPAAGE 131 Query: 124 -------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRV 176 +++ + E K DG +++RYE G+ V AA RGDG +GEDV+ +R I IP Sbjct: 132 QDLFSAADAVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLK 191 Query: 177 LSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRY 235 L P ++EVRGEV++ + DF LN+ G K + NPRNAA+G LR+L+P R Sbjct: 192 LRGQAPAVLEVRGEVFMYRGDFDKLNERQAEAGEKTFVNPRNAAAGSLRQLDPRITAKRP 251 Query: 236 LNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRST 294 L+FF +GLG+ + ML LG PV G++ +Y ++ R Sbjct: 252 LSFFAYGLGELQGVDRPPTHSAMLDGFAALGLPVCKDRAVVKGAQGLLDFYRDIGQRRDA 311 Query: 295 LPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTP 354 LPYDIDG+VYKV+ + Q++LG +R+PR+ ++HKF ++ +T + DI++Q+GRTG +TP Sbjct: 312 LPYDIDGVVYKVNALAEQERLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITP 371 Query: 355 VARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVV 414 VARL+PV +GG +TNATLHNED I+ +D+ +GD V+V+RAG+VIP+VV Sbjct: 372 VARLKPVFVGGVTVTNATLHNEDEIRR-----------KDVHIGDTVIVRRAGDVIPEVV 420 Query: 415 DIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKH 474 ++ R DA+ F P+ CP+C S + + + A RCTGGL C+AQ+ + L H Sbjct: 421 AVVTERRPDDARAFVMPTACPVCGSHIEKLEDE------AIARCTGGLICAAQRKQALLH 474 Query: 475 FVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVS 534 F R A +IEGLG + ++ +R PAD+F L + + ++ D S Sbjct: 475 FAQRRAMDIEGLGDKLVEQLVDQ----GIVRTPADLFKLGVAKLAALERMA------DKS 524 Query: 535 VTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD 594 NL +I+ R ++ RFIF+LGIRHVG A+ LA+++ D Sbjct: 525 AANLVAAIDASRETTMNRFIFALGIRHVGEATAKDLARHFGKLDALMAA----------D 574 Query: 595 WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLV 653 +L+ V VG ++AQ+I F+ P N+ +E L V + + + K V Sbjct: 575 EAALLEVNDVGPVVAQSIAHFFAEPHNVEVIEQLRAAGVHWTESEPVAKAPAPLSGKTFV 634 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TGTL + R A+E + GA V+ +S+KTD ++ G GSKL+KA+ LGV +++E Sbjct: 635 LTGTLPTMSREDAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAG 694 Query: 714 F 714 Sbjct: 695 M 695 >gi|200388789|ref|ZP_03215401.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605887|gb|EDZ04432.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 671 Score = 806 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 242/712 (33%), Positives = 393/712 (55%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAVKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLD 670 >gi|168817829|ref|ZP_02829829.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205345161|gb|EDZ31925.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086917|emb|CBY96687.1| DNA ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 671 Score = 806 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 243/712 (34%), Positives = 395/712 (55%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLNQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 E + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLLD 670 >gi|146342488|ref|YP_001207536.1| DNA ligase [Bradyrhizobium sp. ORS278] gi|166215400|sp|A4YZJ3|DNLJ_BRASO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|146195294|emb|CAL79319.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Bradyrhizobium sp. ORS278] Length = 716 Score = 806 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 294/721 (40%), Positives = 450/721 (62%), Gaps = 12/721 (1%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K +Q + + L+ QA+ E L E+ HD YYQ P I D+ YD L+RR +AI Sbjct: 6 KSKQSVDVADLTKAQAKVEWKRLALELETHDRLYYQEDAPKISDAAYDELRRRFNAIEKR 65 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L + P +G + KV H++P LSL+ + ED+R F+ RI RF + Sbjct: 66 FPELVSR---DSPSQTVGAAPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIARFLKLA 122 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLN 180 +D+ I F+ EPKIDG +++RYE G+ V AA RGDG GEDV+A IR + +P+ L N Sbjct: 123 EDDRIAFSAEPKIDGLSMSLRYEGGQLVTAATRGDGAEGEDVTANIRTLKDVPQKLHGRN 182 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P+I E+RGEVY++K FLALN+ G +ANPRN+A+G LR+ +PT +R L FF Sbjct: 183 LPDICEIRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPTITASRPLGFF 242 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G S + A+ Q M++ GF N + ++ +++++ ++ R+ L YDI Sbjct: 243 AYAWGDMSAMPAETQSGMIKWFEHCGFTTNPLTKLCHSVEELIAFHRAIEEQRAELDYDI 302 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +R+PRW I+HKF ++A T L DI+IQ+GRTG TPV +LE Sbjct: 303 DGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAMTVLKDIEIQVGRTGSFTPVGKLE 362 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ N TLHNEDYIKG+ G+V+R GRDIR+GD V+++RAG+VIP+VVD++++ Sbjct: 363 PVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVLID 422 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R DA+ F+FP CP V G+ + RCTG AC Q++E LK F SR Sbjct: 423 KRPADAEVFAFPRKCPCPLHTDVVREETAAGEEGSRARCTGEFACPYQKIEHLKLFASRR 482 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG++Q+ FFF ++ PADIFTLQ+R + K+E + G+G+ SV NL+ Sbjct: 483 AFDIDGLGEKQIQFFFDE----GWVKEPADIFTLQKRN--AKLKLEEVEGYGETSVRNLF 536 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 ++I RR ++LERFI++LG+R+VG A +LA+ Y S++ F + + + + Sbjct: 537 NAIEARREMALERFIYALGMRYVGETTALALARGYGSWEAFHDACLKVANGDEEAIAEMD 596 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + +G+ + +++ ++ N VE L +EV + + +S I K +VFTGTL+ Sbjct: 597 ALDQIGETVIKSVAAYFGEDHNRGIVERLTREVKI-LDAEKPKRNSPIATKTVVFTGTLE 655 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 K+ R +A+ +LGA VS +S+KTD ++ G GSKL+ A++ GVK++ E+++L L+ Sbjct: 656 KMTRDEAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVKVLTEDEWLQLIG 715 Query: 720 Q 720 + Sbjct: 716 E 716 >gi|224583040|ref|YP_002636838.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|254781413|sp|C0PZB4|DNLJ_SALPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|224467567|gb|ACN45397.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 671 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|194444893|ref|YP_002041687.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|254781412|sp|B4SZU5|DNLJ_SALNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|194403556|gb|ACF63778.1| DNA ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 671 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669 >gi|168231967|ref|ZP_02657025.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471791|ref|ZP_03077775.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458155|gb|EDX46994.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333574|gb|EDZ20338.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 671 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 242/712 (33%), Positives = 393/712 (55%), Gaps = 48/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLLD 670 >gi|167549563|ref|ZP_02343322.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325268|gb|EDZ13107.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 671 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLETLQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669 >gi|62180995|ref|YP_217412.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75481868|sp|Q57LT1|DNLJ_SALCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|62128628|gb|AAX66331.1| DNA ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715476|gb|EFZ07047.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 671 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAEGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|205353534|ref|YP_002227335.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|254781410|sp|B5RCP9|DNLJ_SALG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|205273315|emb|CAR38285.1| DNA ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628629|gb|EGE34972.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 671 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIEQL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|299131914|ref|ZP_07025109.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2] gi|298592051|gb|EFI52251.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2] Length = 706 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 311/726 (42%), Positives = 448/726 (61%), Gaps = 33/726 (4%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K+ + P+E L+ QA+ EL+ L EIS HD+ YYQ P + D++YD L++R AI Sbjct: 5 AKKAVTPVENLTKAQAKVELTRLALEISMHDERYYQKDAPTVSDADYDKLRQRLSAIEER 64 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L + P K+G + + + K+ H++P LSL ++ ED+ +F TR+ RF Sbjct: 65 FPELVAK---DSPSQKVGAQPSRAFAKIRHAVPMLSLGNAFSDEDVAEFATRVRRFLNLG 121 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 D + EPKIDG +++RYE G+ V AA RGDG GEDV+A +R I +P L Sbjct: 122 ADEPLVIVAEPKIDGLSLSLRYENGELVSAATRGDGFEGEDVTANVRTIKDVPHTLRGKG 181 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P I EVRGEVY+ + DFLALN + +ANPRN+A+G LR+ N +R L FF Sbjct: 182 VPAICEVRGEVYMMREDFLALNKKQAEADDTIFANPRNSAAGSLRQKNVEVTASRPLKFF 241 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ SE+ A Q+EM++ + GF VN + +++YY E+++ R++LPYDI Sbjct: 242 AYAWGEMSEMPAPTQFEMVKWLHKAGFVVNPRMTLCRDVEALLTYYREIETERASLPYDI 301 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q +LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG LTPVARL Sbjct: 302 DGVVYKVDRLDWQNRLGFISRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLT 361 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ NATLHNED I +DIR GD V+++RAG+VIP+VV ++ Sbjct: 362 PVTVGGVVVQNATLHNEDEIAR-----------KDIREGDTVVIQRAGDVIPQVVSVVTE 410 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R +A+ +SFP CPIC S VR+ + A RCTG L C AQ +ERLKHFVSR Sbjct: 411 KRRKNAKSYSFPHKCPICGSHAVREEDE------AVRRCTGALICPAQAVERLKHFVSRL 464 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+IEGLG +Q+ F+ I P DIFTLQ+R + K+++ G+GDVSV NL+ Sbjct: 465 AFDIEGLGDKQIQEFYDD----GLIMHPVDIFTLQKRDARAVKKLKDREGYGDVSVNNLF 520 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFA------QEINNIIAHNND 593 +I+ RR I L R IF+LGIRHVG A+ LA++Y S +N + ++ Sbjct: 521 AAIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGSIENLRAAMAEAAAAQTEEGNTSE 580 Query: 594 DWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 + L + +GDI+A A+VEF+ RN+ A++ LL E+ + + S + K +V Sbjct: 581 AYADLNNIGGIGDIVADAVVEFFAEKRNVKALDELLAEIEV-LPAEQVRTDSAVAGKTVV 639 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTG+L K R +A+ +LGA VS +S+KTD ++ G+ GSKL KA++LGV ++ E++ Sbjct: 640 FTGSLTKFTRDEAKAQAERLGAKVSGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDE 699 Query: 714 FLFLLQ 719 +L L++ Sbjct: 700 WLKLIE 705 >gi|333016518|gb|EGK35849.1| DNA ligase, NAD-dependent [Shigella flexneri K-304] Length = 671 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARCTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKLAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|56412686|ref|YP_149761.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361620|ref|YP_002141256.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81362021|sp|Q5PNE2|DNLJ_SALPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781414|sp|B5BB72|DNLJ_SALPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|56126943|gb|AAV76449.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093096|emb|CAR58535.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 671 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAV---EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 669 >gi|300897228|ref|ZP_07115672.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1] gi|300358986|gb|EFJ74856.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1] Length = 671 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + + + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNE--KVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q++LG AR+PRW ++ KF ++ T + D++ ++GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQERLGFVARAPRWAVAFKFPAQEQMTFVRDVEFKVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|24113756|ref|NP_708266.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 301] gi|30063805|ref|NP_837976.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 2457T] gi|110806352|ref|YP_689872.1| NAD-dependent DNA ligase LigA [Shigella flexneri 5 str. 8401] gi|81723177|sp|Q83K81|DNLJ_SHIFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|122366427|sp|Q0T298|DNLJ_SHIF8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|24052834|gb|AAN43973.1| DNA ligase [Shigella flexneri 2a str. 301] gi|30042060|gb|AAP17786.1| DNA ligase [Shigella flexneri 2a str. 2457T] gi|110615900|gb|ABF04567.1| DNA ligase [Shigella flexneri 5 str. 8401] gi|281601828|gb|ADA74812.1| DNA ligase, NAD-dependent [Shigella flexneri 2002017] gi|313650866|gb|EFS15266.1| DNA ligase, NAD-dependent [Shigella flexneri 2a str. 2457T] gi|332755453|gb|EGJ85817.1| DNA ligase, NAD-dependent [Shigella flexneri K-671] gi|332756263|gb|EGJ86614.1| DNA ligase, NAD-dependent [Shigella flexneri 2747-71] gi|333002064|gb|EGK21630.1| DNA ligase, NAD-dependent [Shigella flexneri K-218] Length = 671 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKLAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|254252054|ref|ZP_04945372.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158] gi|124894663|gb|EAY68543.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158] Length = 691 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 262/731 (35%), Positives = 394/731 (53%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L + Sbjct: 1 MARTQAEPPASQPDARA----AWLRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQLEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L P+ P ++GG + V H P LSL + +D+ F R+ K Sbjct: 57 DHPELV---TPDSPTQRVGGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALAK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE G FV AA RGDG +GEDV+ +R I +IP Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L +P +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+P Sbjct: 174 LKLKGRTVPAVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L LG PVN + G+++++ + Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYEALGLPVNRERAVVHGADGLLAFFRRVGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RDALPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGAVLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLVCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFSTLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI+ LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 L+ V VG I+A++I +F+ N +E L P K + Sbjct: 559 --SIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD +I G GSKL KA++LG+ + Sbjct: 617 GKTIVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 677 LDEDGLHQLLE 687 >gi|317049042|ref|YP_004116690.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b] gi|316950659|gb|ADU70134.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b] Length = 672 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 253/712 (35%), Positives = 401/712 (56%), Gaps = 49/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++++++L + +H+ Y+ P + D+EYD L + + A P+L P+ Sbjct: 1 MKSVQEQITALRTTLRHHEYLYHVMDTPEVPDAEYDRLMAQLRELESAHPELV---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ ++ F R+ + DD + + E K Sbjct: 58 PTQRVGAAPLAAFEQVRHEVPMLSLDNTFDEAGFLAFNKRVQDRLKSSDD--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++A +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGLLVSAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 ++++ F LN++ G K +ANPRNAA+G LR+L+P R L FF +GLG Sbjct: 176 MTESGFEKLNEDARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 LQ+ + G PV++ +R AN ++++Y E++ R TL +DIDG+V KVD + Sbjct: 236 PASHLGRLQQFKAWGLPVSDRIRLANNADDVLAFYREVEEARPTLGFDIDGVVIKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVVVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L +R+GD+V+++RAG+VIP+VV+++ +ER D + F Sbjct: 356 ATLHNADEIARL-----------GLRIGDKVVIRRAGDVIPQVVNVVESERPEDTREIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 PS CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PSHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E ++ PAD+F L + T ++ G S N+ D++ K + +L Sbjct: 459 IDQLVEKE----YVKTPADLFRLTAGKLTGLDRM------GPKSAQNVVDALEKAKFTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + D +LI V VG ++A Sbjct: 509 PRFLYALGIREVGEATAANLANHFGELEKVMDA----------DLDALIAVQDVGQVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666 + F N + L +E+ + E + S K +V TG+L ++ R A Sbjct: 559 HVRNFMDEESNREVIRELTQEMGVHWPQVEVVNAAEIDSPFAGKTVVLTGSLSQMNRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 KARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIAVIDEAEMIRLL 670 >gi|333001543|gb|EGK21111.1| DNA ligase, NAD-dependent [Shigella flexneri VA-6] gi|333002206|gb|EGK21770.1| DNA ligase, NAD-dependent [Shigella flexneri K-272] gi|333016032|gb|EGK35364.1| DNA ligase, NAD-dependent [Shigella flexneri K-227] Length = 671 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + P+L P+ Sbjct: 1 MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKLAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLE----------ALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|322613832|gb|EFY10771.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617441|gb|EFY14340.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624929|gb|EFY21758.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629628|gb|EFY26404.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633942|gb|EFY30679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635621|gb|EFY32332.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639981|gb|EFY36651.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644326|gb|EFY40867.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322655311|gb|EFY51620.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658357|gb|EFY54623.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664357|gb|EFY60554.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668412|gb|EFY64568.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673252|gb|EFY69358.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676644|gb|EFY72712.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683394|gb|EFY79408.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685720|gb|EFY81713.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192602|gb|EFZ77831.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196835|gb|EFZ81978.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202141|gb|EFZ87199.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208024|gb|EFZ92969.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212850|gb|EFZ97659.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217119|gb|EGA01841.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219619|gb|EGA04102.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323229192|gb|EGA13316.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235493|gb|EGA19577.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237321|gb|EGA21384.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245552|gb|EGA29550.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248968|gb|EGA32891.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253065|gb|EGA36897.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255865|gb|EGA39610.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261411|gb|EGA44996.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266454|gb|EGA49942.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269716|gb|EGA53166.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 671 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +GA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|223041748|ref|ZP_03611941.1| DNA ligase [Actinobacillus minor 202] gi|223017432|gb|EEF15850.1| DNA ligase [Actinobacillus minor 202] Length = 680 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 262/706 (37%), Positives = 402/706 (56%), Gaps = 46/706 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ +L ++ ++ Y+ P++ D+EYD L + P+L P+ P ++G Sbjct: 15 EIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELI---TPDSPTQRVG 71 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH +P LSL+ ++ EDL F+ R+ + +S+ F EPK+DG + Sbjct: 72 AKPLDGFSQVTHELPMLSLDNAFSDEDLDGFLRRMESYI-SVAPSSLAFCCEPKLDGLAV 130 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED++A IR I IP L N P +EVRGEV++ + F Sbjct: 131 SILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTDNPPLRLEVRGEVFMPQKGF 190 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG--KTSEIFAKGQY 255 ALN + + G K +ANPRNAA+G LR+L+P R L + +G + + + Sbjct: 191 EALNQKALEKGEKTFANPRNAAAGSLRQLDPKITAQRPLMLNAYSIGIYDSDDELPSTHF 250 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ ++ LG PVNN +R ++ +Y ++++ R TL YDIDG V KV++ +LQ+QL Sbjct: 251 ERLQWLKSLGIPVNNEIRLEKGRENLLKFYADIQTKRPTLGYDIDGTVLKVNDIALQEQL 310 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLHN Sbjct: 311 GFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 370 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L I +GD V+++RAG+VIP+++ I+ R +A+ +FP+ CP Sbjct: 371 GDEIERL-----------GIAIGDTVIIRRAGDVIPQIIGIVAERRPKNAKKITFPTACP 419 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 IC S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 420 ICGSAVVRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQLM 473 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + E + PAD+F L + ++ G+ S N +SI K +N +L RF+F Sbjct: 474 ERE----LVHTPADLFKLDQVTLMRLERM------GEKSAQNALNSIEKAKNTTLPRFLF 523 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A +LA ++ S + L V VG+++A IV F Sbjct: 524 ALGIRDVGEATALNLANHFGSLDAIRAAT----------FEQLQEVQDVGEVVANRIVRF 573 Query: 616 YQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +Q P N+ VE L+++ V + + +++K +V TGTL + R +A+ + LG Sbjct: 574 WQEPHNVEVVEDLIQQGVVWQNIEQVEIADNPLKDKNVVLTGTLSVLTRDQAKALLQGLG 633 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 VS +S KTD +I G+ GSKL KAQ+LGVK+++E+ FL ++ Q Sbjct: 634 CKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLSEQDFLAIVGQ 679 >gi|332798609|ref|YP_004460108.1| DNA ligase [Tepidanaerobacter sp. Re1] gi|332696344|gb|AEE90801.1| DNA ligase [Tepidanaerobacter sp. Re1] Length = 675 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 255/720 (35%), Positives = 388/720 (53%), Gaps = 49/720 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + I QA + L + I YH+ YY P I D+EYD L R ++ FP L P Sbjct: 1 MDIVQAENRIKELRESIDYHNYRYYVLDNPEITDAEYDKLMRELISLESQFPQLI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GGE + KVTH P +SL ++ E+LR F R+ N + + +E Sbjct: 58 DSPSQRVGGEPLEAFKKVTHREPMISLADAFSEEELRDFNRRVTENVG----NQVEYVVE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL---SLNIPEIIEVR 188 KIDG +++ YE G V AA RGDG GEDV+ ++ I ++P L IP +IEVR Sbjct: 114 LKIDGLAVSLTYENGLLVTAATRGDGVVGEDVTQNVKTIKSVPLRLNIQKDKIPMVIEVR 173 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE+Y+SK F LN+E +G +ANPRNAA+G +R+L+ R L+ F++ LG Sbjct: 174 GEIYLSKEGFKKLNEEREEMGLPTFANPRNAAAGSIRQLDSKITAKRPLSTFMYALGYVE 233 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 I E+L+ + GF VN ++ N F ++ Y K R +LPY+IDG+V KV+ Sbjct: 234 GIEFNTHLEVLEFYKACGFKVNPHIKSFNNFDDVIDYCMSWKEKRHSLPYEIDGMVIKVN 293 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 QK LG A++PRW I++KF +Q + + DI + +GRTG+LTP A L PV I G+ Sbjct: 294 SLHFQKILGSTAKTPRWAIAYKFPAEQKISVIEDIVVSVGRTGVLTPNAVLTPVQIAGST 353 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNEDYIK +DI +GD V+V++AG++IP+VV +I +R + + Sbjct: 354 VSRATLHNEDYIK-----------EKDIHIGDSVIVQKAGDIIPEVVAVIKEKRTGNEKE 402 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP C S V+R A+RCTG ++C AQ R+ HF SRDA +I GLG Sbjct: 403 FKMPHRCPECGSEVIRLPGE------VAYRCTG-VSCPAQIRRRIIHFASRDAMDIRGLG 455 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + I+ +DI+ L++ ++ G+ S NL +I + Sbjct: 456 PAIVSLLLSEN----LIKDVSDIYFLKKEALIPLERM------GEKSANNLIKAIENSKK 505 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 L R +++LGI +G++ + +LA+ + S N + LI++P +GD Sbjct: 506 QPLNRLVYALGIPLIGSKASLTLAQEFKSMDRLQ----------NATYEELIKIPEIGDK 555 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 +A++I+ F++ + + L + + E+ +EN V TG L+K R KAQ Sbjct: 556 MAESIIAFFKQEQTKALITRLKEAGVNMLYAKEEIGPKPLENLTFVLTGALEKYSRSKAQ 615 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRI 727 E + LG V+ +S+KTD ++VG +PGSK KA +LGVKI++E+QF ++ I Sbjct: 616 ELIENLGGKVTGSVSKKTDYVVVGKDPGSKYNKALELGVKILDEQQFEEMISNAQAETSI 675 >gi|270262950|ref|ZP_06191221.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13] gi|270043634|gb|EFA16727.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13] Length = 673 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 238/713 (33%), Positives = 395/713 (55%), Gaps = 50/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P + D+EYD L + +A P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMNELRELENAHPELITA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R+ + + + F E K Sbjct: 58 PTQRVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE++++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLSGDNIPRRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E K +ANPRNAA+G +R+L+P R L FF +G+G Sbjct: 176 MPQAGFEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + ++ L + + G PV++ + ++++Y +++ R+ L +DIDG+V K+D+ Sbjct: 236 PRSHWQRLMQFKNWGLPVSDRAKCCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDDID 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG AR+PRW + KF ++ T + +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQETLGFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIPKVV +I + R DA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPKVVGVIEDRRPQDAREIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S V R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PLHCPVCGSDVERVEGE------AVTRCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E ++ PAD+F L T ++ G S NL +++ K + + Sbjct: 459 IEQLVEKE----YVKNPADLFRLSAGILTGLDRM------GPKSAQNLVNALEKSKRTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ D +L +VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGELPKLYAA----------DIDALKQVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALL-----KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 + F N ++ L+ + + + S K +V TG+L ++ R + Sbjct: 559 HVRHFLDEELNQKVIDELIGAEIGINWPEVVVVAAEEIDSPFAGKTVVLTGSLSQLSRDE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEAEMIRLL 671 >gi|323702801|ref|ZP_08114460.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574] gi|323532189|gb|EGB22069.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574] Length = 669 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 254/715 (35%), Positives = 395/715 (55%), Gaps = 49/715 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + A++ E + + L +EI+YH+ YY P I D +YD L + + +A+P+L Sbjct: 1 MSAVTPE-IKARVEELRREINYHNHQYYVLDNPTITDGQYDQLVQELLRLENAYPELV-- 57 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P ++GGE+ V H +P LSL ++ DLR+F R+ + + Sbjct: 58 -SPDSPTQRVGGEIQKGFTAVQHRVPMLSLSNAFSENDLREFDRRVRSNLP---GEEVEY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 LE KIDG I++ YE+G FV A RGDG GED++A +R I IP + +IP +EVR Sbjct: 114 VLELKIDGLAISLWYEQGVFVRGATRGDGELGEDITANLRTIKAIPLRIKESIP-FLEVR 172 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE Y+ K F+ LN+ G +ANPRNAA+G LR+L+P +R L+ F++ +G Sbjct: 173 GEAYMPKESFVRLNEAREEAGEPLFANPRNAAAGSLRQLDPRVTASRNLSVFMYAIGHLE 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 +L ++ LGF VN + ++ ++ + R LPY IDGLV KV+ Sbjct: 233 GANPGTHARLLGWLKDLGFRVNQHYKLCKDIEEVIRQIDKWQEQRFELPYAIDGLVIKVN 292 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q++LG +SPRW I++KF +QA + + DI I++GRTG+LTP A LEPV + G Sbjct: 293 SLDQQQRLGATLKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTT 352 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNED I+ +DIR+GD+ LV++AG++IP+VV + R +P Sbjct: 353 VSKATLHNEDIIR-----------QKDIRIGDQALVQKAGDIIPEVVLVFPERRTGQEKP 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F+ PS CP C + VVR AAHRCT C A E + HFVSR A +I GLG Sbjct: 402 FTMPSTCPECNAPVVRLPGE------AAHRCTNK-NCPAISREGIIHFVSRGAMDIMGLG 454 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ A ++ PAD++ L+ ++ S NL ++I ++ Sbjct: 455 ESIVNQLI----MAGLVQDPADLYDLKYEDLIKLERMGA------RSSQNLLNAIAASKH 504 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL + + +LGIRHVG A+ LA+++ S ++ ++A +D +P +G Sbjct: 505 NSLAQLLVALGIRHVGERAAKILARHFGS-------MSALMAATVEDLTV---IPEIGPK 554 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS--EIENKKLVFTGTLQKIQRHK 665 IA++IV+++ P N ++ L + +++ + K V TGTL+ R + Sbjct: 555 IAESIVDYFARPENKTLIQRLDRAGVNMEEANQQAEPGQQPLAGKTFVITGTLEGFSRQE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 AQ + +LG VS +S+KTD ++VG+NPGSK +KAQQLG+ I+NE++F+ LL+Q Sbjct: 615 AQRAIEELGGKVSGSVSKKTDYVVVGENPGSKYDKAQQLGIPILNEQEFVALLKQ 669 >gi|163845839|ref|YP_001633883.1| DNA ligase [Chloroflexus aurantiacus J-10-fl] gi|222523550|ref|YP_002568020.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl] gi|190359243|sp|A9WCA1|DNLJ_CHLAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|254781286|sp|B9LHI6|DNLJ_CHLSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|163667128|gb|ABY33494.1| DNA ligase, NAD-dependent [Chloroflexus aurantiacus J-10-fl] gi|222447429|gb|ACM51695.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl] Length = 709 Score = 805 bits (2078), Expect = 0.0, Method: Composition-based stats. Identities = 267/720 (37%), Positives = 380/720 (52%), Gaps = 55/720 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S ++ L I +D YY PI+ D+EYDAL A+ A P+L P Sbjct: 1 MSHTTVADRINELRSLIRRYDYHYYVLDDPIVSDAEYDALMTELRALEAAHPELI---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++ G KV H P LSL + DL + R+ R D + + +E Sbjct: 58 DSPTQRVSGTPASQFAKVQHPQPMLSLGNAFTKADLLAWRDRVLRLLG--PDAIVAYVVE 115 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-----------SLN 180 PKIDG + + Y G+ V A RGDG GEDV+A +R I +IP L Sbjct: 116 PKIDGLAVALTYRDGRLVQGATRGDGEVGEDVTANLRTIGSIPLTLQATSTPQDDDLPTT 175 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P IEVRGEVY+ DF LND + A G K +ANPRNAA+G LR+ +PT R L FF Sbjct: 176 LPTTIEVRGEVYMRTADFETLNDRLAAAGEKIFANPRNAAAGSLRQKDPTITAARPLRFF 235 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 +G+G I Q++ L+ +R LGFPVN VR+ F +++Y + R LPY+ Sbjct: 236 AYGVGVVEGISLSSQWQTLRYLRALGFPVNQDVRRFTDFAEVLAYCEAWMAKRDDLPYEA 295 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+V K+D+F+ Q++LG R PRW I+ KF ++A TRLLDI + +GRTG++TP A LE Sbjct: 296 DGVVIKIDDFAQQRELGVVGRDPRWAIAFKFPAREAITRLLDITVNVGRTGVVTPNAELE 355 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV IGG + NA+LHN DYI RDIR+GD V+VKRAG+VIP VV ++ Sbjct: 356 PVQIGGVTVRNASLHNADYI-----------AQRDIRIGDYVIVKRAGDVIPYVVGPVIA 404 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R +P+ FP+ CP C S + R+ AA RC C AQ + R++HFVSR Sbjct: 405 RRDGSERPWQFPTHCPACGSPLEREEGE------AAWRCNNFSICPAQLVRRVEHFVSRS 458 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +I G+G++Q + F + IR ADIF L+ Q + GFG + NL Sbjct: 459 ALDIVGMGERQAELFVQR----GLIRDVADIFFLKADQLA------ELEGFGPKRIANLL 508 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I+ R L+R + LGIR+VG A++L S + I+A ++ Sbjct: 509 AAIDAARQRPLDRLLVGLGIRYVGTVAAQTLVAALGSL-------DAIMAARQEELE--- 558 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTL 658 ++P +G ++A +IV+F+ P N +E L G S + K V TGTL Sbjct: 559 QIPGIGPVVAASIVDFFSRPANRALIEKLRAAGVQMGGVSGPTRQSDTLAGKTFVLTGTL 618 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + R +A + G V+ +S+KT ++ G N GSKL KA QLG+ +++E L L+ Sbjct: 619 PSLSREQASALIVAHGGKVTDSVSKKTSYVVAGANAGSKLAKALQLGIPVIDEAGLLALI 678 >gi|198243638|ref|YP_002216496.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|254781408|sp|B5FQB9|DNLJ_SALDC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|197938154|gb|ACH75487.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624250|gb|EGE30595.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 671 Score = 805 bits (2078), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 392/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y ++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLV 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|238785571|ref|ZP_04629551.1| DNA ligase [Yersinia bercovieri ATCC 43970] gi|238713506|gb|EEQ05538.1| DNA ligase [Yersinia bercovieri ATCC 43970] Length = 670 Score = 805 bits (2078), Expect = 0.0, Method: Composition-based stats. Identities = 249/712 (34%), Positives = 405/712 (56%), Gaps = 47/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L ++ + P+L S + Sbjct: 1 MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLESQHPELITS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R++ ++ + + F E K Sbjct: 58 PTQRVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRTE--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++A +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LNDE G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQAGFEQLNDEARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L + + G PV+N V+ ++++Y +++ R+ L +DIDG+V KVD+ Sbjct: 236 PRSHIQRLMQFKAWGLPVSNRVQLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDLD 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +++ +R DA+ +F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PEHCPVCGSDIERVEGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + + + PAD+F L + T ++ G S NL ++ + + + Sbjct: 459 IEQLVEKQ----YVENPADLFELTAGKLTGLDRM------GPKSAQNLIVALERAKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + N D L VP VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFRNMANLRAA----------DIDELKSVPDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 ++ F N +EAL K +S + + + S K +V TG+L + R +A++ Sbjct: 559 HVLNFLGEEHNQRVIEALEKVISWPEPQQIIAEEIDSPFAGKTVVLTGSLTILSRDEAKD 618 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +T LGA VS +SRKTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 619 RLTALGAKVSGSVSRKTDLVIAGEAAGSKLVKAQELGITVIDEAEMIRLLGE 670 >gi|283832193|ref|ZP_06351934.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220] gi|291071830|gb|EFE09939.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220] Length = 671 Score = 805 bits (2078), Expect = 0.0, Method: Composition-based stats. Identities = 246/711 (34%), Positives = 393/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D EYD L + + P+L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDLLMHKLQWLEALHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + D + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTD--KLTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPTRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGAL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ +++YY++++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVALCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PQHCPVCNSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+FTL + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFTLTAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLD----------ALEAASIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L + R A+ Sbjct: 559 HVFNFFAEESNREVIGQLLAQGIHWPAPVVINAEEIDSPFAGKTVVLTGSLSLMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +T+LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|320173862|gb|EFW49042.1| DNA ligase [Shigella dysenteriae CDC 74-1112] Length = 671 Score = 805 bits (2078), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 394/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P I D+EYD L R + +L P+ Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHLELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLK--NNEKVTWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V + ++++Y++++ R TL +DIDG+V KV+ Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 QQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFKLTAGKLTGLERM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + A L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGT----------LKALEAASIEELQKVPDVGIVVAS 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A I + + + S K +V TG+L ++ R A+ Sbjct: 559 HVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + L LL Sbjct: 619 ARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 >gi|295401729|ref|ZP_06811695.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius C56-YS93] gi|294976216|gb|EFG51828.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius C56-YS93] Length = 670 Score = 805 bits (2078), Expect = 0.0, Method: Composition-based stats. Identities = 253/715 (35%), Positives = 391/715 (54%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A K + L + ++ ++ YY +P + DSEYD L + A+ +PDL Sbjct: 1 MERQAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTK--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ + KV H P LSL +N DLR F R+ + + + + E Sbjct: 58 DSPSQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVRQEVG----DDVAYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I ++P L LN P +E RGE Sbjct: 114 LKIDGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLP--LRLNEPVTLEARGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 Y+ K F LN++ G + +ANPRNAA+G LR+L+P R+L+ FV+GL E+ Sbjct: 172 YMPKASFERLNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L ++ LGF N R+ ++ + NE + R LPY+IDG+V KVD F+ Sbjct: 232 IASHSAALDYLQQLGFKTNPERRRCANMDEVMQFVNEWQEKRPQLPYEIDGIVIKVDSFA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG A+SPRW I++KF ++ T+L+DI++ +GRTG++TP A LEPV + G + Sbjct: 292 QQEQLGATAKSPRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED+I+ +DIR+GD V++K+AG++IP+VV+++ + R + PF Sbjct: 352 ATLHNEDFIR-----------EKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR A NIEGLG++ Sbjct: 401 PTHCPECASELVRIEGE------VALRCINP-KCPAQIREGLIHFVSRQAMNIEGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ I ADI+ L + Q ++ G+ S TNL +I + SL Sbjct: 454 ISQLFRE----GLIHDVADIYRLTKDQLIDLERM------GEKSATNLLHAIEASKQNSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ A+ LA+++ + + + + +G+ +A Sbjct: 504 ERLLFGLGIRHVGAKAAKVLAEHFETMDRLQNATKEEL----------MAIHEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 +IV ++ P + L + +V S K +V TG L+ + R++ Sbjct: 554 SIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTVVLTGKLESLSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+E + QLG V+ +S+ TD++I G + GSKL KAQQL ++I +E +FL ++Q Sbjct: 614 AKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDETRFLEEIEQ 668 >gi|212638096|ref|YP_002314616.1| NAD-dependent DNA ligase LigA [Anoxybacillus flavithermus WK1] gi|254781544|sp|B7GFV1|DNLJ_ANOFW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|212559576|gb|ACJ32631.1| NAD-dependent DNA ligase [Anoxybacillus flavithermus WK1] Length = 672 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 253/709 (35%), Positives = 395/709 (55%), Gaps = 52/709 (7%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 K+++ L ++I H+ YY +P I D+EYD L R+ + +P + P+ P Sbjct: 8 DVEKQIAELREQIEKHNYAYYVLDQPSISDAEYDELMRKLMELEEQYPQY---KTPDSPS 64 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GG + KVTH +P LSL +N DLR F R+ ++ + + E KID Sbjct: 65 QRVGGAPLEAFRKVTHRVPMLSLSNAFNEGDLRDFDRRVR-----QEVGDVRYVCELKID 119 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISK 195 G +++RYE G FV A RGDG +GED++ ++ I ++P L + IEVRGE Y+ + Sbjct: 120 GLAVSLRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLRQQV--TIEVRGEAYMPR 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIFAKGQ 254 F LN++ G + +ANPRNAA+G LR+L+P R L+ F + + E+ Sbjct: 178 KSFEKLNEKRKMNGEELFANPRNAAAGSLRQLDPKVAASRQLDIFAYHVVNAEELGILSH 237 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 L + LGF N + T ++SY + R++LPYDIDG+V KVD F+ QKQ Sbjct: 238 SAALNYLDELGFKTNPARQVCETIDDVLSYIEQWHERRASLPYDIDGIVIKVDAFAQQKQ 297 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG A+SPRW I++KF ++ T+L+DI++ +GRTG++TP A L+PV + G ++ A+LH Sbjct: 298 LGATAKSPRWAIAYKFPAEEVVTQLVDIELSVGRTGVVTPTAILQPVRVAGTIVQRASLH 357 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 NEDYI+ +DIR+GD V++K+AG++IP+VV + R +PF P+ C Sbjct: 358 NEDYIR-----------EKDIRLGDYVVIKKAGDIIPEVVCSLPERRTGKEEPFDMPTHC 406 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P C S +VR + A RC C AQ E L HFVSR A NI+GLG++ + Sbjct: 407 PACASELVRLDDE------VALRCVNP-QCPAQIREGLIHFVSRQAMNIDGLGEKVIAQL 459 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 F+ +R AD++TL + + + ++ G+ S TNL +I + SLER + Sbjct: 460 FEHR----LVRSVADLYTLTKDELVALERM------GEKSATNLLQAIEASKQNSLERLL 509 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F LGIRHVGA+ A++LA+++ + + Q + + + +G+ +A +IV Sbjct: 510 FGLGIRHVGAKAAKTLAEHFETMERLQQATKEEL----------MAIHEIGEKMADSIVT 559 Query: 615 FYQNPRNICAVEALLKEVSPSI---GRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 ++ +E L + ++SS K V TGTLQ + R +A+E + Sbjct: 560 YFSKEEVKQLLERLRAYGVNMTYKGAKQTIDISSTFAGKTFVLTGTLQSMSRSEAKEKIE 619 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 LG V+ +S+KTD+++VG++ GSKLEKA+QLG+ I +E +FL +QQ Sbjct: 620 TLGGKVTGSVSKKTDVVVVGEDAGSKLEKAKQLGITIWDEARFLQEIQQ 668 >gi|29140957|ref|NP_804299.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213160907|ref|ZP_03346617.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424270|ref|ZP_03357114.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213583650|ref|ZP_03365476.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650852|ref|ZP_03380905.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|29136582|gb|AAO68148.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 671 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P ILD+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|312112463|ref|YP_003990779.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1] gi|311217564|gb|ADP76168.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1] Length = 670 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 253/715 (35%), Positives = 391/715 (54%), Gaps = 53/715 (7%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + + A K + L + ++ ++ YY +P + DSEYD L + A+ +PDL Sbjct: 1 MERQAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTK--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG+ + KV H P LSL +N DLR F R+ + + + + E Sbjct: 58 DSPSQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVRQEVG----DDVAYVCE 113 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++RYE G FV A RGDG +GED++ ++ I ++P L LN P +E RGE Sbjct: 114 LKIDGLAVSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLP--LRLNEPVTLEARGEA 171 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 Y+ K F LN++ G + +ANPRNAA+G LR+L+P R+L+ FV+GL E+ Sbjct: 172 YMPKASFERLNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELG 231 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L ++ LGF N R+ ++ + NE + R LPY+IDG+V KVD F+ Sbjct: 232 IASHSAALDYLQQLGFKTNPERRRCANMDEVIQFVNEWQEKRPQLPYEIDGIVIKVDSFA 291 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q+QLG A+SPRW I++KF ++ T+L+DI++ +GRTG++TP A LEPV + G + Sbjct: 292 QQEQLGATAKSPRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQR 351 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNED+I+ +DIR+GD V++K+AG++IP+VV+++ + R + PF Sbjct: 352 ATLHNEDFIR-----------EKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVM 400 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP C S +VR A RC C AQ E L HFVSR A NIEGLG++ Sbjct: 401 PTHCPECASELVRIEGE------VALRCINP-KCPAQIREGLIHFVSRQAMNIEGLGEKV 453 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + F+ I ADI+ L + Q ++ G+ S TNL +I + SL Sbjct: 454 ISQLFRE----GLIHDVADIYRLTKDQLIDLERM------GEKSATNLLHAIEASKQNSL 503 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 ER +F LGIRHVGA+ A+ LA+++ + + + + +G+ +A Sbjct: 504 ERLLFGLGIRHVGAKAAKVLAEHFETMDRLQNATKEEL----------MAIHEIGEKMAD 553 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR-----HEKNVSSEIENKKLVFTGTLQKIQRHK 665 +IV ++ P + L + +V S K +V TG L+ + R++ Sbjct: 554 SIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTVVLTGKLESLSRNE 613 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+E + QLG V+ +S+ TD++I G + GSKL KAQQL ++I +E +FL ++Q Sbjct: 614 AKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDETRFLEEIEQ 668 >gi|206579402|ref|YP_002237241.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342] gi|288934177|ref|YP_003438236.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22] gi|254781350|sp|B5XVT4|DNLJ_KLEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|206568460|gb|ACI10236.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342] gi|288888906|gb|ADC57224.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22] Length = 671 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 248/713 (34%), Positives = 399/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + DD + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDD--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G + AA RGDG +GED+++ +R I TIP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 LQ+ + G PV++ V +T +++YY +++ R L +DIDG+V KVD + Sbjct: 236 PASHSARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLSAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + + Q L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAALAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N + A + + + S K +V TG+L ++ R A+ Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|307248328|ref|ZP_07530352.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306855149|gb|EFM87328.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 682 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 255/707 (36%), Positives = 404/707 (57%), Gaps = 46/707 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR I IP L+ N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254 F ALN+ + G K +ANPRNAA+G LR+L+P R L +G+G ++ + Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L ++ G+ S N +SI K +N +L RF+ Sbjct: 475 MECE----LVHTPADLFKLDHTTLMRLERM------GEKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + + + + ++ K +V TGTL ++ R +A+ + Sbjct: 575 FWQEPHNVAVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGE 681 >gi|157371681|ref|YP_001479670.1| NAD-dependent DNA ligase LigA [Serratia proteamaculans 568] gi|190359284|sp|A8GHF2|DNLJ_SERP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|157323445|gb|ABV42542.1| DNA ligase, NAD-dependent [Serratia proteamaculans 568] Length = 673 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 239/713 (33%), Positives = 395/713 (55%), Gaps = 50/713 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P + D+EYD L A+ A P+L + + Sbjct: 1 MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMGELRALESAHPELITA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H +P LSL+ +++ E F R+ + D + F E K Sbjct: 58 PTQRVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSD--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE++++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E K +ANPRNAA+G +R+L+P R L FF +G+G Sbjct: 176 MPQAGFEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + ++ L + + G PV++ ++ ++++Y +++ R+ L +DIDG+V K+D+ Sbjct: 236 PRSHWQRLMQFKDWGLPVSDRAKRCTGSDEVLAFYRQVEQDRTQLGFDIDGVVVKIDDID 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG AR+PRW + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQETLGFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVLVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIP+VV +I R DA+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVIAERRPADAREILF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S V R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PQHCPVCGSDVERVEGE------AVARCTGGLICAAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E ++ PAD+F L T ++ G S NL +++ K + + Sbjct: 459 IEQLVEKE----YVKNPADLFRLSAGILTGLDRM------GPKSAQNLVNALEKSKQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + D +L VP VG+I+A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGTLDKLLAA----------DIEALKEVPEVGEIVAK 558 Query: 611 AIVEFYQNPRNICAV-----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 F N + + + + + + S K +V TG+L ++ R + Sbjct: 559 HTRHFLDEELNQQVIQELVSDEIGINWPAPVVIVAEEIDSPFAGKTVVLTGSLSQLSRDE 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 619 AKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIEVIDEAEMIRLL 671 >gi|240948595|ref|ZP_04752968.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305] gi|240297103|gb|EER47674.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305] Length = 679 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 262/704 (37%), Positives = 403/704 (57%), Gaps = 46/704 (6%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 E+ +L ++ ++ Y+ P++ D+EYD L + P+L P+ P ++G Sbjct: 15 EIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELI---TPDSPTQRVG 71 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +VTH +P LSL+ ++ EDL F+ R+ + +S+ F EPK+DG + Sbjct: 72 AKPLDGFSQVTHELPMLSLDNAFSDEDLDGFLRRMESYISVTP-SSLDFCCEPKLDGLAV 130 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDF 198 +I Y G AA RGDG +GED++A IR I IP L N P +EVRGEV++ + F Sbjct: 131 SILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLRLKTDNPPLRLEVRGEVFMPQKGF 190 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG--KTSEIFAKGQY 255 ALN + + G K +ANPRNAA+G LR+L+P R L + +G + + + Sbjct: 191 EALNQKALEKGEKTFANPRNAAAGSLRQLDPKITAQRPLMLNAYSIGIYDSDDELPNTHF 250 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E LQ ++ LG PVNN +R ++ +Y ++++ R TL YDIDG V KV++ +LQ+QL Sbjct: 251 ERLQWLKSLGIPVNNEIRLEKGRENLLKFYADIQTKRPTLGYDIDGTVLKVNDIALQEQL 310 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLHN Sbjct: 311 GFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 370 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D I+ L I +GD V+++RAG+VIP+++ I+ R +A+ +FP+ CP Sbjct: 371 GDEIERL-----------GIAIGDTVIIRRAGDVIPQIIGIVAERRPENAKKITFPTACP 419 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 IC S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 420 ICGSAVVRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLIEQLM 473 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + E + PAD+F L + ++ G+ S N +SI K +N +L RF+F Sbjct: 474 ERE----LVHTPADLFKLDQVTLMRLERM------GEKSAQNALNSIEKAKNTTLPRFLF 523 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGIR VG A +LA ++ S + A + L V VG+++A IV F Sbjct: 524 ALGIRDVGEATALNLANHFGSLE----------AIRTATFEQLQEVQDVGEVVANRIVRF 573 Query: 616 YQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 +Q P N+ VE L+++ V + + +++K +V TGTL + R +A+ + LG Sbjct: 574 WQEPHNVEVVEDLIQQGVVWQNIEQVEIADNPLKDKNVVLTGTLSVLTRDQAKALLQGLG 633 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 VS +S KTD +I G+ GSKL KAQ+LGVK+++E+ FL ++ Sbjct: 634 CKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLSEQDFLEIV 677 >gi|290508381|ref|ZP_06547752.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55] gi|289777775|gb|EFD85772.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55] Length = 671 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 248/713 (34%), Positives = 399/713 (55%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P + D+EYD L R + P+L P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + DD + + E K Sbjct: 58 PTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDD--LTYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G + AA RGDG +GED+++ +R I TIP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 LQ+ + G PV++ V +T +++YY +++ R L +DIDG+V KVD + Sbjct: 236 PASHSARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV++ G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQITFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +++GD+V+++RAG+VIP+VV+++++ER DA+ F Sbjct: 356 ATLHNADEIERL-----------GLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+CQS V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCQSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVEKE----YVHTPADLFRLSAGKLTGLDRM------GPKSAQNVVNALEKAKETTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + + Q L +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAALAAHFGTLEALEQA----------SIEELQKVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F+ N + A + + + S K +V TG+L ++ R A+ Sbjct: 559 HTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL + Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE 671 >gi|16761347|ref|NP_456964.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|81513487|sp|Q8Z4W4|DNLJ_SALTI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|25294013|pir||AI0809 DNA ligase (NAD) (EC 6.5.1.2) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503646|emb|CAD07659.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi] Length = 671 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 243/711 (34%), Positives = 395/711 (55%), Gaps = 48/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++L+ L + +H+ Y+ P ILD+EYD L R + PDL P+ Sbjct: 1 MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H +P LSL+ +++ E F R+ + ++ + + E K Sbjct: 58 PTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTEN--VIWCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG ++I YE G V AA RGDG +GED+++ +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F +N++ G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 LPQTGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 L + + G PV++ V ++ ++ +Y+ ++ R TL +DIDG+V KV+ + Sbjct: 236 PDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G L++N Sbjct: 296 LQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD+V+++RAG+VIP+VV+++++ER + +P F Sbjct: 356 ATLHNADEIERL-----------GLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R A RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PTHCPVCGSDVERVEGE------AVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ +++ K + + Sbjct: 459 IDQLVERE----YVHTPADLFRLTAGKLTGLDRM------GPKSAQNVVNALEKAKATTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A LA Y+ + + + + +VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQ----------KVPDVGIVVAT 558 Query: 611 AIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 + F+ N + A + + + + S K +V TG+L ++ R A+ Sbjct: 559 HVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAK 618 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL Sbjct: 619 ARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 669 >gi|121533514|ref|ZP_01665342.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1] gi|121308073|gb|EAX48987.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1] Length = 673 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 258/709 (36%), Positives = 384/709 (54%), Gaps = 46/709 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 ++EQA +E L ++I YH+ YY P I D+E+DAL RR AI A+P L P+ Sbjct: 8 TLEQAAREAEQLRRQIHYHNHRYYVLDAPEISDAEFDALMRRLIAIEEAYPSLI---TPD 64 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++GG + H P LSL ++ EDLR F R+ + + +E Sbjct: 65 SPTQRVGGAPAEGFDRTLHLTPMLSLANAFSAEDLRAFDNRVRSGLG---VDKAEYVVEL 121 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEV 191 KIDG + + YE G+ V A RGDG GEDV+A +R I ++P VL +N P ++EVRGEV Sbjct: 122 KIDGLAVNLVYEAGRLVRGATRGDGQYGEDVTANVRTIRSVPLVLPVNDPPALLEVRGEV 181 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEIF 250 Y+ + +F LN+E A G +ANPRNAA+G LR+L+P R L+ FV+ G+ + Sbjct: 182 YMPRREFDRLNEERQAAGEALFANPRNAAAGSLRQLDPRVTAQRALDIFVYATGRREGLN 241 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + + L+ + LGF VN R + ++ Y R LPYDIDGLV K++ + Sbjct: 242 METHAQTLETLAALGFKVNPHYRVFGSIEEVIDYCYSWNERRVDLPYDIDGLVIKLNSLA 301 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 Q +LG A+ PRW I+ KF +QA+T + DI +++GRTG+LTP A+L PV + G+ ++ Sbjct: 302 GQARLGATAKDPRWAIAFKFPAEQATTIVEDIFVRVGRTGVLTPTAQLRPVRLAGSTVSR 361 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHNEDYI+ +DIR+GD V++ +AGEVIP+VV ++ + R+ +PF Sbjct: 362 ATLHNEDYIRD-----------KDIRIGDTVIIHKAGEVIPEVVAVVASRRNGSERPFVM 410 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP C S VVR+ AAH+C AC A E L HFVSRDA NIEGLG Sbjct: 411 PDRCPECGSPVVREPGE------AAHKCVNS-ACPAMLREGLIHFVSRDAMNIEGLGPAV 463 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 + A +R AD++ L+ T ++ G S NL +I + L Sbjct: 464 IGSLLD----AGLVRDAADLYALRFDDLTKLDRM------GPKSAQNLLQAIEASKEAGL 513 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 R +F+LGIR VGA+ A +LA+++ S + L+ + +G IA+ Sbjct: 514 ARLLFALGIRFVGAKAAGTLARHFGSIHALERAT----------VEELMALEEIGPKIAE 563 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 ++ ++ +P+NI V L + V TGTL + R +A E + Sbjct: 564 SVANYFADPQNIALVRKLEAAGVKVTEERPAAKRQTLAGITFVLTGTLATMTRAEATELI 623 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 G VS+ +S+KT+ ++ G+ GSKL+KA++LG+ ++ E +F LL+ Sbjct: 624 ESRGGKVSSSVSKKTNYVVAGEEAGSKLDKARELGIPVLTEGEFKKLLE 672 >gi|303250616|ref|ZP_07336813.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252937|ref|ZP_07534825.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650604|gb|EFL80763.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859575|gb|EFM91600.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 682 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 255/707 (36%), Positives = 405/707 (57%), Gaps = 46/707 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR I IP L+ N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254 F ALN+ + G K +ANPRNAA+G LR+L+P R L +G+G ++ + Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L+ ++ G+ S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKLEHTTLMRLERM------GEKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + + + + ++ K +V TGTL ++ R +A+ + Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIALTGE 681 >gi|294635487|ref|ZP_06713972.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685] gi|291091145|gb|EFE23706.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685] Length = 675 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 253/715 (35%), Positives = 402/715 (56%), Gaps = 55/715 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++L L + +H+ YY +P + D+EYD L + A+ +P L + + P Sbjct: 5 IEQQLEQLRAALRHHEYQYYVLDEPQVTDAEYDRLMMQLKALESDYPQLVTA---DSPSQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + +V H +P LSL+ +++ E R F R++ + D ++ F E K+DG Sbjct: 62 RVGGAPLAAFGQVHHEVPMLSLDNVFDEESYRAFDKRLHERLKS--DAALTFCCELKLDG 119 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195 +++ YE+G V AA RGDG +GED+++ ++ I IP L +IP+ IEVRGEV++ + Sbjct: 120 LAVSLLYEQGVLVRAATRGDGSTGEDITSNVKTIRAIPLRLQGEDIPDRIEVRGEVFMPQ 179 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSE-IFAKG 253 F A+N+E G K +ANPRNAA+G LR+L+P R L F+ +G G Sbjct: 180 AGFEAMNEEARRRGGKIFANPRNAAAGSLRQLDPRITARRPLTFYCYGAGLLEGGTLPGS 239 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ LQ+ + G PV+ V++ + +++YY + + R TL +DIDG+V KVD+ + Q+ Sbjct: 240 HYQCLQRFKSWGLPVSERVKRCHGSDEVLAYYRQTEQDRPTLGFDIDGVVIKVDDIATQE 299 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 LG AR+PRW + KF ++ T+L ++ Q+GRTG +TPVARLEPV + G ++NATL Sbjct: 300 ALGFVARAPRWATAFKFPAQEQMTQLNGVEFQVGRTGAITPVARLEPVQVAGVTVSNATL 359 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L +R+GD V+V+RAG+VIP+VV ++ ++R DA FP+ Sbjct: 360 HNADEIERL-----------GLRIGDTVIVRRAGDVIPQVVGVVESQRPADATEILFPTH 408 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S V R A RC+GGL C+AQ+ E LKHFVSR A ++EG+G + ++ Sbjct: 409 CPVCGSEVERIEGE------AVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQ 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + E + PAD++ L + T ++ G S L ++++ R+ +L RF Sbjct: 463 LVERE----YVTTPADLYRLSAGKLTGLERM------GPKSANKLIAALDRSRSTTLARF 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VG A +LA ++ S A D SL VP VG+++A+ I Sbjct: 513 LFALGIREVGEATAANLASHFGSLS----------ALRGADLESLKSVPEVGEVVARHIR 562 Query: 614 EFYQNPRNICAVEA--------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 F N ++ +V+P++ E + S K +V TG+L + R + Sbjct: 563 HFLSEAHNCQVIDELISAEIGIHWPDVTPALQAAE--IDSPFAGKTVVLTGSLSVLSRDE 620 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A++ + LGA VS +S+KTD++I G+ GSKL KA LG+ +++E Q L +L + Sbjct: 621 AKDRLVALGAKVSGSVSKKTDLVIAGEAAGSKLVKANTLGITVIDEAQLLQMLGE 675 >gi|304398312|ref|ZP_07380186.1| DNA ligase, NAD-dependent [Pantoea sp. aB] gi|304354178|gb|EFM18551.1| DNA ligase, NAD-dependent [Pantoea sp. aB] Length = 672 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 247/712 (34%), Positives = 392/712 (55%), Gaps = 49/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + ++ L + +H+ Y+ P + D+EYD L R + PDL P+ Sbjct: 1 MKSVQDHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +V H +P LSL+ ++ F R+ + +D I + E K Sbjct: 58 PTQRVGAAPLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKNSED--ITYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++A +R I IP L NIP +EVRGEV+ Sbjct: 116 LDGAAVSLMYENGLLVQAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 +++ F LN+E K +ANPRNAA+G LR+L+P R L FF +G G Sbjct: 176 MTQRGFEKLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 LQ+ + G PV++ +++ + +++Y E++ R L +DIDG+V KVD + Sbjct: 236 PHSHMARLQQFKAWGLPVSDRIKRVHNAEEALAFYREIEQQRPNLGFDIDGVVIKVDSQA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW I+ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GDRV+++RAG+VIP+VV++++ ER + + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R + RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PAHCPVCGSEVERVEGE------SVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ D++ K ++ +L Sbjct: 459 IDQLVEKE----YVSTPADLFRLTAGKLTGLDRM------GPKSAQNVVDALEKAKSTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ Q D +LI VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAANLANHFGELQKVMDA----------DLEALIAVPDVGKVVAT 558 Query: 611 AIVEFYQNPRNICAV----EALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F + N + E + + + + S K +V TG+L ++ R A Sbjct: 559 HVRNFMEEESNREVIRQLTEEIGIHWPQVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 619 KAQLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670 >gi|261345310|ref|ZP_05972954.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541] gi|282566645|gb|EFB72180.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541] Length = 678 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 244/726 (33%), Positives = 401/726 (55%), Gaps = 56/726 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +Q P +AL ++++ SL+Q++ +H+ Y+ P I D EYD L + + Sbjct: 1 MTTKQ--PQDAL-----KQKIDSLKQQLRHHEYLYHVLDAPEIPDVEYDKLMQELKGLEA 53 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L + + P ++G + V H +P LSL+ +++ E F R+ Sbjct: 54 ENPELITT---DSPTQRVGAAPLTAFGTVRHEVPMLSLDNVFDEESYLAFDKRVKDRLN- 109 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179 + + F E K+DG +++ YE G+ V AA RGDG GE+++ +R I IP L Sbjct: 110 -NHTELTFCCELKLDGLAVSLLYENGELVQAATRGDGSVGENITVNVRTIKAIPLRLRGD 168 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 NIP +E+RGEV++ + F A+N+E K +ANPRNAA+G LR+L+P R L F Sbjct: 169 NIPARVEIRGEVFMPQKGFEAMNEEARRTDGKIFANPRNAAAGSLRQLDPRITAKRPLTF 228 Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 + +G+G YE L + + G PV+ V+ ++ +Y+ ++ IR TL + Sbjct: 229 YCYGVGLVEGNTLPDTHYERLMQFKAWGLPVSEHVQLRVGCQQVLDFYHHVEKIRPTLGF 288 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+V KV++ + Q++LG +R+PRW + KF ++ T L D++ Q+GRTG +TPVAR Sbjct: 289 DIDGVVIKVNDIATQEKLGFVSRAPRWATAFKFPAQEQLTLLKDVEFQVGRTGAITPVAR 348 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV + G +++NATLHN D I+ L +R+GD V+++RAG+VIP++V ++ Sbjct: 349 LEPVQVAGVVVSNATLHNADEIERL-----------GVRIGDTVVIRRAGDVIPQIVSVV 397 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +++R D++ +FP+ CP+C S + R A RCTGGL C AQ E LKHFVS Sbjct: 398 MDKRPADSREITFPTQCPVCHSDIERVEGE------AVARCTGGLTCGAQLKESLKHFVS 451 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A +++G+G + ++ +E ++ A ++ L + T ++ G S Sbjct: 452 RRAMDVDGMGDKIIEQLVDAE----YVKNAAQLYQLSAGKLTGLERM------GPKSAQK 501 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L D++ K + +L RFI++LGIR VG A +LA +Y S A D S Sbjct: 502 LIDALEKSKQTTLARFIYALGIREVGEATAANLASHYASLD----------AVMAADEES 551 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLV 653 L V +G+++A+ +V F+ N + LL + + + S K +V Sbjct: 552 LKAVQDIGEVVAKHVVNFFHEEHNRQVIHDLLTIANIHWPEVKVVNSDEIDSPFAGKTVV 611 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 TG++ ++ R +A++ + LGA V+ +S+KTD++I G+ GSKL KA +LGVK+++E++ Sbjct: 612 LTGSMSRLTRDEAKDQLVALGAKVAGSVSKKTDMVIAGEAAGSKLAKAIELGVKVIDEDE 671 Query: 714 FLFLLQ 719 + LL Sbjct: 672 LVRLLN 677 >gi|209884394|ref|YP_002288251.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5] gi|254781382|sp|B6JB45|DNLJ_OLICO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|209872590|gb|ACI92386.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5] Length = 706 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 305/726 (42%), Positives = 445/726 (61%), Gaps = 33/726 (4%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K+ L ++ L+ QA+ E L EI+ HD+ YYQ P + D+ YD+L++R +A+ Sbjct: 5 SKKPLPSVDQLTKAQAKVEHKRLALEIAMHDERYYQKDAPTVSDAAYDSLRQRLNAVEAR 64 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+L + + P K+G + + + K+ H++P LSL ++ E++ +F+ R+ RF Sbjct: 65 FPELVTT---DSPSQKVGAQPSRAFAKIRHAVPMLSLGNAFSDEEVAEFVARVRRFLNLG 121 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180 D + EPKIDG +++RYE G+ V AA RGDG GEDV+A +R I +P L N Sbjct: 122 ADEPLAVVAEPKIDGLSLSLRYENGELVNAATRGDGFEGEDVTANVRTIKDVPHKLKGKN 181 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLN-PTDITRYLNFF 239 IP + EVRGEVY+ + DFL LN + G +ANPRN+A+G LR+ N +R L FF Sbjct: 182 IPAVCEVRGEVYMLREDFLTLNKKQADSGDTIFANPRNSAAGSLRQKNVAITASRPLKFF 241 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ S + A Q+EM++ GF VN + ++ YY E+++ R+ L YDI Sbjct: 242 AYAWGEMSAMPATTQFEMVKWFEKAGFAVNPRMILCRDVEALLRYYREIETERAQLSYDI 301 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q +LG +RSPRW I+HKFA +QA+T L IDIQ+GRTG LTPVARL Sbjct: 302 DGVVYKVDRLDWQTRLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLA 361 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 V +GG ++ NATLHNED I +DIR GD V+++RAG+VIP+VV ++ + Sbjct: 362 AVTVGGVVVQNATLHNEDEIAR-----------KDIREGDTVVIQRAGDVIPQVVSVVTD 410 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R A+P+SFP CP+C S VR+ A RCTG L C AQ +ERLKHFVSR Sbjct: 411 KRPKHAKPYSFPHVCPVCGSHAVREEGE------AVRRCTGALICPAQAVERLKHFVSRL 464 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+IEGLG +Q+ F+ ++ I P DIFTL +R +T K+++ G+GDVSV NL+ Sbjct: 465 AFDIEGLGDKQIHEFYDAK----LIMHPVDIFTLAKRDAHATDKLKDREGYGDVSVRNLF 520 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDD----- 594 +I+ RR I L R IF+LGIRHVG A+ LA++Y + +NF + A ++ Sbjct: 521 AAIDARRRIELNRLIFALGIRHVGEGNAKLLARHYGTIENFRAAMAEAAAAQTEEGNPSE 580 Query: 595 -WLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLV 653 + L + VGDI+A A+VEF+ RN+ A+ LL E+ + + S + K +V Sbjct: 581 AYADLNAIGGVGDIVADAVVEFFAEERNVKALNELLHEIEV-LPAEQVRADSAVAGKTVV 639 Query: 654 FTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQ 713 FTG+L K R +A+ +LGA VS +S+KTD ++ G+ GSKL KA++LGV ++ E++ Sbjct: 640 FTGSLTKFTREEAKAQAERLGAKVSGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDE 699 Query: 714 FLFLLQ 719 +L L++ Sbjct: 700 WLKLIE 705 >gi|212710592|ref|ZP_03318720.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM 30120] gi|212686673|gb|EEB46201.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM 30120] Length = 678 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 241/714 (33%), Positives = 394/714 (55%), Gaps = 49/714 (6%) Query: 13 SIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPN 72 + + +++ +L+Q++ +H+ Y+ P I D EYD L + A+ P+L + + Sbjct: 6 NPDALTQKIDALKQQLRHHEYLYHVMDAPEIPDVEYDKLMQELKALEAEHPELITT---D 62 Query: 73 GPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEP 132 P ++G + V H IP LSL+ +++ E F R+ + + F E Sbjct: 63 SPTQRVGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVKDRL--HNHTELTFCCEL 120 Query: 133 KIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEV 191 K+DG +++ YE G+ V AA RGDG GE+++A +R I IP L NIP +E+RGEV Sbjct: 121 KLDGLAVSLLYENGELVQAATRGDGTVGENITANVRTIKAIPLRLRGDNIPARVEIRGEV 180 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-I 249 ++ + F A+N+E K +ANPRNAA+G LR+L+P R L F+ +G+G Sbjct: 181 FMPQKGFEAMNEEARKTDGKIFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGKT 240 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 YE L + + G PV+ V+ ++ +Y+ ++ IR TL +DIDG+V KV++ Sbjct: 241 LPDTHYERLMQFKAWGLPVSEHVQLRVGCQQVLDFYHHVEKIRPTLGFDIDGVVIKVNDI 300 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 ++Q++LG +R+PRW + KF ++ T L D++ Q+GRTG +TPVARLEPV + G +++ Sbjct: 301 AIQEELGFVSRAPRWATAFKFPAQEQITLLKDVEFQVGRTGAITPVARLEPVQVAGVVVS 360 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHN D I L +R+GD V+++RAG+VIP++V +++++R D++ Sbjct: 361 NATLHNADEIDRL-----------GVRIGDTVVIRRAGDVIPQIVSVVMDKRPADSREII 409 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP+C S + R A RCTGGL C AQ E LKHFVSR A +++G+G + Sbjct: 410 FPTHCPVCNSDIERVEGE------AVARCTGGLTCGAQLKESLKHFVSRRAMDVDGMGDK 463 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 ++ +E + A ++ L + T ++ G S L D++ K + + Sbjct: 464 IIEQLVDAE----YVANAAQLYQLSAGKLTGLERM------GPKSAQKLIDALEKSKQTT 513 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L RFI++LGIR VG A +LA +Y S A D SL V +G+++A Sbjct: 514 LARFIYALGIREVGEATAANLAAHYASLD----------AVMAADEDSLKTVQDIGEVVA 563 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHK 665 + +V F++ N + LL + + + S K +V TG++ + R Sbjct: 564 KHVVHFFREEHNRQVIHDLLTIANIHWPEVKVINSAEIDSPFAGKTVVLTGSMSTLSRDD 623 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A++ + LGA V+ +S+KTD++I G+ GSKL KA +LG+K+++EE+ + LL Sbjct: 624 AKDKLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKATELGIKVIDEEELIRLLN 677 >gi|315122567|ref|YP_004063056.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495969|gb|ADR52568.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 739 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 483/725 (66%), Positives = 583/725 (80%), Gaps = 5/725 (0%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M R+ IPIE LS EQA+KELS L+ EISYHDD YYQ+S+P ILD EYD LK RCDAIA Sbjct: 1 MANRKFIPIEELSPEQAKKELSFLQHEISYHDDLYYQHSQPKILDFEYDQLKERCDAIAR 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFP+ A D NGPLNKIGGE N SLFK+THS P SLEK IED+ F+T+IYR +K Sbjct: 61 AFPEFASLADSNGPLNKIGGEKNFSLFKITHSPPMRSLEKSHQIEDINYFMTKIYRDLKK 120 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 NSI FTLEPKIDG ++IRYE+GKFV+A LRGDG+ GEDVSA I + IP+VLS Sbjct: 121 DCYNSIVFTLEPKIDGASLSIRYEQGKFVHAGLRGDGYIGEDVSANISMMSIIPQVLSFK 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILR---RLNPTDITRYLN 237 +PEI EVRGE+YISK DF LN+EM +K Y+NPRN +G+LR + + + I+RYL Sbjct: 181 VPEIFEVRGEIYISKKDFFVLNEEMRTTKKKLYSNPRNTVAGLLRSRNQTSKSRISRYLK 240 Query: 238 FFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 FFVHG+G SE FA GQYEMLQKMR LGFPVN ++QA+T GIVSYY+E IRS+LPY Sbjct: 241 FFVHGIGTISEKFADGQYEMLQKMRALGFPVNERIQQAHTLEGIVSYYDETALIRSSLPY 300 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKVD F+LQ+QLGER+RSP W ISHKF++++ ST LL IDIQIGRTG+LTP+AR Sbjct: 301 DIDGIVYKVDSFTLQQQLGERSRSPIWAISHKFSDEEFSTPLLGIDIQIGRTGMLTPIAR 360 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 E +N+GG ++NATLHNE+YIKGLD+SGK++RGGRDIR+GD +LVKRAG+VIPKV D+I Sbjct: 361 FESINMGGVFVSNATLHNENYIKGLDSSGKIIRGGRDIRIGDMILVKRAGDVIPKVTDVI 420 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + ER D+Q FSFPS CP+CQS+VVR +NPKTGKL ++H CTGGL C AQQLE LK+FVS Sbjct: 421 MEERPIDSQMFSFPSSCPVCQSKVVRAVNPKTGKLGSSHYCTGGLMCPAQQLEYLKYFVS 480 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 RDAFNIEGLG++QLDFFFKSEDP+FSIRIPADIFTLQ RQQTS K+ENI GF VSVTN Sbjct: 481 RDAFNIEGLGEKQLDFFFKSEDPSFSIRIPADIFTLQHRQQTSFKKLENIPGFAHVSVTN 540 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 LYDSINKRRNISL+RFIFSLGI HVG EIARSLA++Y SYQNF EI NI+ ND +S Sbjct: 541 LYDSINKRRNISLQRFIFSLGIHHVGIEIARSLAQFYRSYQNFETEIKNILDKKNDADVS 600 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSI--GRHEKNVSSEIENKKLVFT 655 L +V LVGD++AQ+I+ FYQNP N A+ ALL E+S S+ + + + +S + NK+LVFT Sbjct: 601 LKKVALVGDMVAQSIIAFYQNPENNRAIAALLNEISLSVWDSQEDNSRNSILANKRLVFT 660 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTLQKI RH+AQE V QLGA+VS+ +S KT I++VGDN GSKL KA+QLG++I+NEEQFL Sbjct: 661 GTLQKITRHQAQEAVKQLGAIVSSTISHKTHIVVVGDNAGSKLNKARQLGIEIVNEEQFL 720 Query: 716 FLLQQ 720 L+ + Sbjct: 721 SLISE 725 >gi|149915267|ref|ZP_01903795.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b] gi|149810988|gb|EDM70827.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b] Length = 720 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 304/714 (42%), Positives = 441/714 (61%), Gaps = 16/714 (2%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P++ LS +QA +EL+ L ++ D Y+ PI+ D+ YDAL +R AI FPDL R Sbjct: 17 PVDKLSADQAAQELARLADLVAQADAAYHGQDAPIMSDAAYDALVQRNAAIEARFPDLMR 76 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIF 127 + P ++G + KVTH++ LSL + +++R+F RI R+ + ++ Sbjct: 77 E---DSPSRRVGFTPSEGFGKVTHAVRMLSLGNAFEDDEIREFDARIRRYLGLSPEAALT 133 Query: 128 FTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIE 186 +T EPKIDG +++RYE+G+ V AA RGDG GE+V+A R I IP L +PE++E Sbjct: 134 YTSEPKIDGLSLSLRYEQGRLVQAATRGDGAEGENVTANARTIADIPHDLGGAGVPELLE 193 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGK 245 VRGEVY+S DF ALN K +ANPRNAA+G LR+L+P R L FF + G Sbjct: 194 VRGEVYMSHADFEALNTRQTERSDKTFANPRNAAAGSLRQLDPKITARRPLKFFAYAWGA 253 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 SE A Q E + ++ GF N + +++ Y ++ +R+ L YDIDG+VYK Sbjct: 254 HSEPLAPSQMEAIARLAGFGFQTNPLTALCDGPDEMLAQYRRIEQLRAELGYDIDGVVYK 313 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 V+E +LQ +LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL PV +GG Sbjct: 314 VNEIALQHRLGYRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLHPVTVGG 373 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYI G DA G +RGG+DIRVGD V V RAG+VIPKV D+ +++R D+ Sbjct: 374 VVVSNATLHNEDYIAGRDAKGNKIRGGKDIRVGDWVQVYRAGDVIPKVADVDLSKRPEDS 433 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P++FP CP C S +R+ + A RCTGGL C AQ +E+LKHFVSR AF+IEG Sbjct: 434 APYTFPKVCPECGSDAIRE------EGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIEG 487 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTS-TTKIENILGFGDVSVTNLYDSINK 544 LG +Q++ F IR PADIFTL+ R T+++N G+G+ S NL+D+I++ Sbjct: 488 LGAKQVEQFHAD----GWIREPADIFTLKDRYGPGCLTQLKNRDGWGEKSAANLFDAIDE 543 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 RR I+L R +F+LGIRHVG + LA++Y ++ F ++ A DW L+ + V Sbjct: 544 RRRIALGRLLFALGIRHVGEAASMMLARFYGTWDEFTAAMDGAAAGEGPDWDRLLGIDGV 603 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRH 664 G ++AQ++V + +++ L+ + S + K +VFTGTL+K+ R Sbjct: 604 GKVMAQSLVTTFAQDEERASIDRLVAHLEIERAERPDTDGSPVAGKTVVFTGTLEKMTRA 663 Query: 665 KAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 +A+ LGA VS +S KTD++I G GSK + A+QLGV++++E+ +L L+ Sbjct: 664 EAKARAEALGAKVSGSVSAKTDLVIAGPGAGSKAKAAEQLGVEMIDEDGWLALI 717 >gi|167586849|ref|ZP_02379237.1| DNA ligase, NAD-dependent [Burkholderia ubonensis Bu] Length = 691 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 263/733 (35%), Positives = 394/733 (53%), Gaps = 56/733 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L I Sbjct: 1 MARTQAEPPASQPDARA----AWLRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQIEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L P+ P ++GG + V H P LSL + ED+ F RI K Sbjct: 57 DHPELV---TPDSPTQRVGGAVAGGFTPVVHDAPMLSLNNGFEDEDIVAFDKRIADALDK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE G FV A+ RGDG +GEDV+ +R I ++P Sbjct: 114 AVDLAGSVTDPVEYACELKFDGLAISLRYENGVFVQASTRGDGTTGEDVTQNVRTIRSLP 173 Query: 175 RVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L N+P +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+P Sbjct: 174 LKLKGRNLPAVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G +L LG PVN +G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGAPMPDTHSALLDWYETLGLPVNRERAVVRGANGLLGFFRKIGEQ 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q++LG +R+PR+ ++HKF ++A T L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTTLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R A F P+ CP+C SR+ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGAVLDRRPDPAPEFVMPTECPVCGSRIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI+ LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLNPIMDAT------- 559 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 L+ V VG I+A++I +F+ N +E L P K + Sbjct: 560 ---VEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQQY 721 ++E+ LL+ + Sbjct: 677 LDEDGLHQLLEGH 689 >gi|269138493|ref|YP_003295193.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202] gi|267984153|gb|ACY83982.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202] gi|304558517|gb|ADM41181.1| DNA ligase [Edwardsiella tarda FL6-60] Length = 675 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 255/711 (35%), Positives = 394/711 (55%), Gaps = 51/711 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++L L + +H+ YY +P + D+EYD L + + P L + + P Sbjct: 5 IEQQLEQLRDALRHHEYQYYVLDEPQVTDAEYDRLMAQLKQLEAEHPALVTA---DSPSQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + +V H +P LSL+ +++ E + F R++ + + F EPK+DG Sbjct: 62 RVGGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHERLKS--GEPLTFCCEPKLDG 119 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISK 195 +++ YE+G V AA RGDG +GED++A ++ I IP L IP IEVRGEV++ + Sbjct: 120 LAVSLLYEQGMLVRAATRGDGSTGEDITANVKTIRAIPLRLQGVAIPARIEVRGEVFMPQ 179 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKG 253 + F A+N+E G K +ANPRNAA+G LR+L+P R L F+ +G G Sbjct: 180 DGFEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGSGLLEGGTLPDS 239 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ LQ+ + G PV+ V+ +++YY + + R L +DIDG+V KVD+ ++Q+ Sbjct: 240 HYQCLQRFKSWGLPVSERVKLCCGSAEVLAYYRQTEQDRPGLGFDIDGVVIKVDDIAIQE 299 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW + KF ++ TRL ++ Q+GRTG +TPVARLEPV + G ++NATL Sbjct: 300 RLGFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVQVAGVTVSNATL 359 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L D+R+GD V+V+RAG+VIP+VV ++ R DA FP+ Sbjct: 360 HNADEIERL-----------DLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDALEIGFPTH 408 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S V R A RC+GGL C+AQ+ E LKHFVSR A ++EG+G + ++ Sbjct: 409 CPVCGSEVERTEGE------AVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQ 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD++ L + T ++ G S T L ++ + R +L RF Sbjct: 463 LVDKE----YVATPADLYRLSAGKLTGLERM------GPKSATKLIAALERSRETTLARF 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VG A +LA ++ S Q A D SL RVP VG+++A IV Sbjct: 513 LFALGIREVGEATAANLASHFGSLQ----------ALRAADLESLKRVPEVGEVVASHIV 562 Query: 614 EFYQNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F N ++ ++ + + + S K +V TG+L + R +A+ Sbjct: 563 HFLSEAHNRQVIDELISDEVGIRWPEGAPAQSAPAIDSPFAGKTVVLTGSLSVLSRDEAK 622 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T LGA VS +S+KTD++I G+ GSKL KA LG+++++E Q L +L Sbjct: 623 DRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKANALGIEVIDEAQMLRML 673 >gi|167581473|ref|ZP_02374347.1| DNA ligase, NAD-dependent [Burkholderia thailandensis TXDOH] Length = 691 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 265/726 (36%), Positives = 399/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E S Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE+ V H P LSL ++ +D+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLVGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + +IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++ +++ + + R +LPYD Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C SRV R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S L Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIDEL 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E L + P + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 KLLEGH 689 >gi|238919178|ref|YP_002932692.1| NAD-dependent DNA ligase LigA [Edwardsiella ictaluri 93-146] gi|238868746|gb|ACR68457.1| DNA ligase, NAD-dependent, putative [Edwardsiella ictaluri 93-146] Length = 672 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 260/711 (36%), Positives = 396/711 (55%), Gaps = 51/711 (7%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++L L + +H+ YY P I D+EYD L + + P L + P Sbjct: 2 IEQQLEQLRDALRHHEYQYYVLDDPQITDAEYDRLMMQLKQLEAVHPALVTV---DSPSQ 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++GG + +V H +P LSL+ +++ E + F R++ + D + F EPK+DG Sbjct: 59 RVGGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHERLKS--DEPLTFCCEPKLDG 116 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISK 195 +++ YE+G V AA RGDG +GED+++ ++ I IP L IP IEVRGEV++ + Sbjct: 117 LAVSLLYEQGVLVRAATRGDGTTGEDITSNVKTIRAIPLRLQGEAIPARIEVRGEVFMPQ 176 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IFAKG 253 + F A+N+E G K +ANPRNAA+G LR+L+P R L F+ +G G+ Sbjct: 177 DGFEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGTGQLEGGALPDS 236 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 Y+ LQ+ + G PV+ VR +++YY ++ R TL +DIDG+V KVD+ ++Q+ Sbjct: 237 HYQCLQRFKSWGLPVSERVRLCCGSAEVLAYYRQIGQARPTLGFDIDGVVIKVDDIAIQE 296 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG AR+PRW + KF ++ TRL ++ Q+GRTG +TPVARLEPV + G ++NATL Sbjct: 297 RLGFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVLVAGVTVSNATL 356 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L D+R+GD V+V+RAG+VIP+VV ++ R DA FP+ Sbjct: 357 HNADEIERL-----------DLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDAHEIGFPTH 405 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S V R A RC+GGL C+AQ+ E LKHFVSR A ++EG+G + ++ Sbjct: 406 CPVCGSEVERTEGE------AVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQ 459 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD++ L + T ++ G S T L ++++ R +L RF Sbjct: 460 LVDKE----YVATPADLYRLSAGKLTGLERM------GPKSATKLIAALDRSRETTLARF 509 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 +F+LGIR VG A +LA ++ S Q A D SL RVP VG+++A IV Sbjct: 510 LFALGIREVGEATAANLASHFGSLQ----------ALRAADLESLKRVPEVGEVVASHIV 559 Query: 614 EFYQNPRNICAVEA------LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 F N ++ ++ + + V S K +V TG+L + R +A+ Sbjct: 560 HFLSEEHNRQVIDELISDEVGIRWPEGAPAQSAPAVDSPFAGKTVVLTGSLSVLSRDEAK 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + +T LGA VS +S+KTD++I GD GSKL KA LG+++++E Q L +L Sbjct: 620 DRLTALGARVSGSVSKKTDLVIAGDAAGSKLAKANILGIEVIDEAQMLRML 670 >gi|83647417|ref|YP_435852.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396] gi|123767368|sp|Q2SD47|DNLJ_HAHCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83635460|gb|ABC31427.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396] Length = 683 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 248/715 (34%), Positives = 391/715 (54%), Gaps = 43/715 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++EL++L + I+ H+ YY P I D+EYD L RR I FP P+ Sbjct: 5 PAAIQEELNTLRETINDHNYRYYTLDDPSIPDAEYDRLMRRLREIEAEFPQTI---TPDS 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G V+H +P LSL+ + +DL F R+ ++ +D I + EPK Sbjct: 62 PTQRVGAAPAEGFETVSHRLPMLSLDNAFEEQDLLDFDRRVRERLKEAEDARIDYCCEPK 121 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG I++ Y G V RGDG +GED++A ++ + IP L P +EVRGE+Y Sbjct: 122 LDGIAISLLYRDGYLVRGVTRGDGSAGEDITANVKTVKNIPLKLRGEGYPAELEVRGEIY 181 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIFA 251 + K F A+N + A G K + NPRNAA+G LR+L+P R L + +G Sbjct: 182 LPKAAFDAINKDAAAKGEKTFVNPRNAAAGSLRQLDPRITAKRALEMCCYSVGYFEGELP 241 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 Q+++L +++ G +N+ ++ A+ + YY + S+R LPY+IDG+V+KV+ L Sbjct: 242 GTQHDILTQLQQWGLKINSQMKLASGAQECLDYYRHIMSVRDQLPYEIDGVVFKVNRIDL 301 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q++LG +R+PRW I+HKF + T LL +D Q+GRTG +TPVARL+PV +GG ++NA Sbjct: 302 QQELGFVSRAPRWAIAHKFPAHEEMTELLAVDFQVGRTGAVTPVARLKPVFVGGVTVSNA 361 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L D+ +GD V+++RAG+VIP+VV ++ + R +A P P Sbjct: 362 TLHNMDEIRRL-----------DVHIGDTVIIRRAGDVIPQVVSVVQDRRPENAVPVDRP 410 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S V++ A RC+GGL CSAQ+ E +KHF SR A +I+GLG + + Sbjct: 411 EHCPVCGSDVLQLEGE------AVARCSGGLYCSAQRKEAIKHFASRKAMDIDGLGDRLV 464 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + + E I PA +++L+ ++ G+ S NL ++I + + Sbjct: 465 ELLVEKE----LIDSPASLYSLKAPDVAGLERM------GEKSAQNLINAIEASKQTTFA 514 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RFI++LGIR VG A+ LA+++ + Q + + P +G I A Sbjct: 515 RFIYALGIREVGEATAKVLAQHFPTLDLLKQATEEDL----------VEAPDIGPISAGH 564 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS-EIENKKLVFTGTLQKIQRHKAQEYV 670 I F+Q N+ ++ALL + ++ + + + V TG L R +A++ + Sbjct: 565 IRSFFQQEHNLETIDALLNQGVSWPEVVVRSTETLPLSGQTAVVTGVLADYSRDEAKDLL 624 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTL 725 T+LGA VS +S KT ++ G+ GSKL KAQ LGVK+++E+ F LL+++ L Sbjct: 625 TRLGAKVSGSVSAKTGFVVAGEKAGSKLTKAQDLGVKVLDEDAFKQLLEEHQAHL 679 >gi|52425821|ref|YP_088958.1| NAD-dependent DNA ligase LigA [Mannheimia succiniciproducens MBEL55E] gi|81386743|sp|Q65RN7|DNLJ_MANSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52307873|gb|AAU38373.1| Lig protein [Mannheimia succiniciproducens MBEL55E] Length = 675 Score = 801 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 254/715 (35%), Positives = 396/715 (55%), Gaps = 45/715 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 ++I +++ L + YH+ Y+ P I D+EYD L + A+ P+L + Sbjct: 1 MTIMDINQQIKQLRDTLRYHEYQYHVLDDPKIPDAEYDRLFHQLKALEQQHPELITA--- 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++G + ++TH +P LSL+ ++ E+ F+ RI + F E Sbjct: 58 DSPTQRVGAKPLAGFAQITHELPMLSLDNAFSDEEFNAFVKRIQDRLIVLP-QPLTFCCE 116 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGE 190 PK+DG ++I Y G AA RGDG +GED++ IR I IP ++L+ N P +EVRGE Sbjct: 117 PKLDGLAVSIFYVNGVLTQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPARLEVRGE 176 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITR-YLNFFVHGLGKTSEI 249 V++ F LN+ + G K +ANPRNAA+G LR+L+P +R L F + +G + Sbjct: 177 VFMPHEGFNRLNERALEHGEKTFANPRNAAAGSLRQLDPKITSRRPLVFNAYSVGIAEGV 236 Query: 250 -FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 YE LQ ++ +G PVN+ V+ + ++ +Y M+ R TL YDIDG V K+++ Sbjct: 237 ELPATHYERLQWLKSVGIPVNSEVQLCDGSEKVLEFYRSMQQKRPTLGYDIDGTVLKIND 296 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 LQ++LG +++PRW I++KF ++ TRL D++ Q+GRTG +TPVA+L PV + G + Sbjct: 297 IGLQRELGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLAPVFVAGVTV 356 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I L DI +GD V+++RAG+VIP+++ ++ R +AQ Sbjct: 357 SNATLHNGDEIARL-----------DIAIGDTVVIRRAGDVIPQIIGVLHERRPANAQAI 405 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+C S++VR A RCTGGL C AQ+ E LKHFVSR A +I+G+G Sbjct: 406 VFPTQCPVCGSKIVRIEGE------AVARCTGGLFCDAQRKEALKHFVSRRAMDIDGVGA 459 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E IR PAD+F L ++ G+ S N DS+ K +N Sbjct: 460 KLIEQLVDKE----LIRTPADLFKLDLITLMRLERM------GEKSAQNALDSLEKAKNT 509 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RFIF+LGIR VG A +LA ++ + + V VG+++ Sbjct: 510 TLARFIFALGIREVGEATALNLANHFKNLDALQAASPEQLQ----------EVADVGEVV 559 Query: 609 AQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQ 667 A I F++ NI AV L+ + + ++ + + K +V TGTL ++ R++ + Sbjct: 560 ANRIYVFWREQHNIDAVNDLIAQGIHWETVETKEAGENPFKGKTVVLTGTLTQMGRNETK 619 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + + QLGA + +S KT +I GDN GSKL KAQ+LGV +M+E +FL ++ Y Sbjct: 620 DLLQQLGAKAAGSVSAKTHFVIAGDNAGSKLTKAQELGVAVMSEAEFLAIVNAYK 674 >gi|167619582|ref|ZP_02388213.1| DNA ligase, NAD-dependent [Burkholderia thailandensis Bt4] Length = 691 Score = 801 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 264/726 (36%), Positives = 399/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E S Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE+ V H P LSL ++ +D+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + +IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +++VRGEV + + DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRMLDVRGEVLMFRRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++ +++ + + R +LPYD Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C SRV R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S L Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIDEL 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E L + P + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 KLLEGH 689 >gi|221198328|ref|ZP_03571374.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M] gi|221208267|ref|ZP_03581271.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2] gi|221171915|gb|EEE04358.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2] gi|221182260|gb|EEE14661.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M] Length = 691 Score = 801 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 260/731 (35%), Positives = 394/731 (53%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L R + Sbjct: 1 MARTQAEPPASQPDARA----AWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLES 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P+ P ++GG + V H P LSL + +D+ F R+ K Sbjct: 57 DHPDLV---TPDSPTQRVGGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L + +P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+P Sbjct: 174 LKLKGDRVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L LG PVN G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGMPIPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ I +Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGAVLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S + + Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMNATIDEL--- 563 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 + V VG I+A++I +F+ N +E L P K + Sbjct: 564 -------LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD +I G GSKL KA+ LG+ + Sbjct: 617 GKTVVLTGTLPNLTRDDAKEMLEAAGAKVAGSVSKKTDYVIAGIEAGSKLAKAEALGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 677 LDEDGLHQLLE 687 >gi|37525354|ref|NP_928698.1| NAD-dependent DNA ligase LigA [Photorhabdus luminescens subsp. laumondii TTO1] gi|81416713|sp|Q7MBH2|DNLJ_PHOLL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|36784781|emb|CAE13691.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 672 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 240/714 (33%), Positives = 392/714 (54%), Gaps = 49/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +++ L + +H+ Y+ P I D+EYD L + + +P+L S + Sbjct: 1 MKSTAQQIEKLRTTLRHHEYLYHVMDAPEIPDAEYDRLMQELQDLEEQYPELITS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P +IG + +V H IP LSL+ +++ E F R+ ++ D + E K Sbjct: 58 PTQRIGAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKETQD--LVVCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE++++ IR I IP L NIP IE+RGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITSNIRTIGAIPLRLFGENIPARIEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G Sbjct: 176 MPQKGFEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFFCYGVGILEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 YE L + + G PV++ V+ ++ +Y+++ + RS L +DIDG+V K++ Sbjct: 236 PASHYERLIQFKKWGLPVSDKVKVCTDSQQVIDFYHDIVNQRSALGFDIDGVVVKINSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG AR+PRW + KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEILGFVARAPRWATAFKFPAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVSGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+++RAG+VIP+VV ++ R D+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIIRRAGDVIPQVVGVLEERRPQDSNVVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C + + R A RCTGGL C AQ+ E L+HFVSR A +++G+G++ Sbjct: 405 PEHCPVCGADIERIEGE------AVARCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D E ++ PAD+F L + T ++ G S N+ D++ K + + Sbjct: 459 IDQLVDKE----YVKTPADLFRLTAGKLTGLDRM------GPKSAQNVVDALEKAKKTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ + D +L V VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGELDKLR----------SADEEALKEVQDVGEVVAK 558 Query: 611 AIVEFYQNPRNICA----VEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +V F+ P N ++ + P + + + S K +V TG+L ++ R +A Sbjct: 559 HVVNFFIEPHNQTVIDDLIDDIGINWEPVVVTRAEKIDSPFSGKTVVLTGSLHQLSRDEA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA V+ +S+KTD++I G+ GSKL KA +L + +++EE+ + LL + Sbjct: 619 KAKLVALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIPVIDEEEMIRLLGE 672 >gi|294677201|ref|YP_003577816.1| DNA ligase [Rhodobacter capsulatus SB 1003] gi|294476021|gb|ADE85409.1| DNA ligase (NAD(+)) [Rhodobacter capsulatus SB 1003] Length = 707 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 294/719 (40%), Positives = 433/719 (60%), Gaps = 17/719 (2%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +++L+ +A E+ L I + Y+ P I D++YDALKRR AI Sbjct: 2 MSAAPFSDLDSLTRAEAEAEVPELVARIEAANHAYHTLDAPKISDADYDALKRRLAAIEA 61 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 FPDLAR+ + P ++G + KV H I LSLE + D+ F R+ + Sbjct: 62 RFPDLARA---DSPTMRVGAAVAEGFGKVAHEIRMLSLENAFLDADVADFDGRMRSYLGL 118 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 ++++ T EPKIDG +++RYE G V AA RGDG GE+V+ R I IP+ L+ Sbjct: 119 GPESALPCTAEPKIDGLSLSLRYEDGLLVQAATRGDGEVGENVTENARTIADIPQRLT-G 177 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 P ++EVRGEVY+S DF ALN G K +ANPRNAA+G +R+L+ +R L FF Sbjct: 178 APAVLEVRGEVYMSHADFAALNARQAERGDKTFANPRNAAAGSVRQLDARITASRPLKFF 237 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G SE + Q +++++ LGF N R ++++Y +++ R+TL YDI Sbjct: 238 AYSWGVLSEPLSDTQLGAIERLKALGFQTNPLTRLCADTAEMLAHYRAIEAQRATLGYDI 297 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKV++ +LQ +LG R+ +PRW I+HKF + A TRL I+IQ+GRTG L+PVARL Sbjct: 298 DGVVYKVNDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVARLA 357 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG +++NATLHNEDYI GL + G+V+R G+DIR GD V V RAG+VIPKV D+ ++ Sbjct: 358 PVTVGGVVVSNATLHNEDYIAGLSSKGEVIRDGKDIREGDWVQVYRAGDVIPKVADVDLS 417 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R P AQPF FP CP C S +R+ + A RCTGGL C AQ +E+LKHFVSR Sbjct: 418 RRDPAAQPFVFPHLCPECGSEALRE------EGDAVRRCTGGLICPAQAVEKLKHFVSRA 471 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+IEGLG +Q++ F+K IR PA+IFTLQ R +++N G+G+ S NL+ Sbjct: 472 AFDIEGLGAKQVEAFYKD----GWIREPAEIFTLQARFGAGLQQLKNREGWGEKSAQNLF 527 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I ++R I L R IF+LGIRHVG A A +YL+++ F + + + +W L+ Sbjct: 528 QAIEEKRKIPLARLIFALGIRHVGESSAALFATHYLTWERFEAAMRAAVPGS-AEWQELL 586 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + VG+ +A ++ + A++ L+ ++ + S + +VFTGTL+ Sbjct: 587 SIDGVGETLAASVTAAFHPGAERDAIDRLVTHLTVEPAVP-RASDSPVAGLTVVFTGTLE 645 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ R +A+ LGA V+ +S KTDI++ G GSK +KA LGV++++EE ++ L+ Sbjct: 646 RMTRAEAKARAEALGAKVAGSVSAKTDILVAGPGAGSKAKKAADLGVRVIDEEAWIRLI 704 >gi|308187689|ref|YP_003931820.1| DNA ligase [Pantoea vagans C9-1] gi|308058199|gb|ADO10371.1| DNA ligase [Pantoea vagans C9-1] Length = 672 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 246/713 (34%), Positives = 392/713 (54%), Gaps = 49/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + ++ L + +H+ Y+ P + D+EYD L R + PDL P+ Sbjct: 1 MKSVQDHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLI---TPDS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G +V H +P LSL+ ++ F R+ + DD I + E K Sbjct: 58 PTQRVGAAPLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKSSDD--ITYCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G V AA RGDG +GE+++A +R I IP L NIP +EVRGE++ Sbjct: 116 LDGAAVSLMYENGLLVRAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEIF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 +++ F LN+E K +ANPRNAA+G LR+L+P R L FF +G G Sbjct: 176 MTQRGFEKLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEM 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 LQ+ + G PV++ ++ + +++Y +++ R L +DIDG+V KVD + Sbjct: 236 PHSHMGRLQQFKAWGLPVSDRIKLVHNAEEALAFYRDIEQQRPNLGFDIDGVVIKVDSQA 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+QLG AR+PRW I+ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++N Sbjct: 296 LQEQLGFVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GDRV+++RAG+VIP+VV++++ ER + + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S V R + RCTGGL C AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PAHCPVCGSEVERVEGE------SVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D + E + PAD+F L + T ++ G S N+ D++ K ++ +L Sbjct: 459 IDQLVEKE----YVDTPADLFRLTAGKLTGLDRM------GPKSAQNIVDALEKAKSTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ Q D +LI VP VG ++A Sbjct: 509 ARFLYALGIREVGEATAANLANHFGELQKVMDA----------DLEALIAVPDVGKVVAA 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGR----HEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + F + N + L ++ + + + S K +V TG+L ++ R A Sbjct: 559 HVRNFMEEESNREVIRQLTDDIGIHWPQVVVVKAEEIDSPFAGKTVVLTGSLSQMNRDDA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + + LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E + + LL Sbjct: 619 KAQLIALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLLD 671 >gi|219870289|ref|YP_002474664.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165] gi|254781340|sp|B8F314|DNLJ_HAEPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219690493|gb|ACL31716.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165] Length = 675 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 258/704 (36%), Positives = 406/704 (57%), Gaps = 46/704 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +L L +++ ++ Y+ P++ D+EYD L + P+L S + P Sbjct: 5 IETQLEHLREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITS---DSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G + ++TH IP LSL+ ++ +DL F+ RI + N I F EPK+DG Sbjct: 62 RVGAKPLDGFAQITHEIPMLSLDNAFSDDDLTGFLRRIEDRI-AINSNQIEFCCEPKLDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 ++I Y G AA RGDG +GED++A IR I IP L N P +EVRGEV++ + Sbjct: 121 LAVSILYVDGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLEVRGEVFMPQ 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG--KTSEIFAK 252 F LN++ +A G K +ANPRNAA+G LR+L+P + R L + +G ++ + Sbjct: 181 QGFEQLNEKALAKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGVYESDDELPT 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++ LQ ++ LG PVN + A + ++Y ++++ RS+L YDIDG V KV+E +LQ Sbjct: 241 THFDRLQWLKTLGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTVLKVNEITLQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NAT Sbjct: 301 EQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L I +GD V+++RAG+VIP++V ++ R +A+ +FP+ Sbjct: 361 LHNGDEIERL-----------GIAIGDTVIIRRAGDVIPQIVGVVAERRPDNAKKIAFPT 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 410 ACPVCNSAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIE 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + E I PAD+F L ++ G+ S N SI K +N +L R Sbjct: 464 QLMERE----LIHTPADLFKLDHTTLMRLDRM------GEKSANNALQSIEKAKNTTLAR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+F+LGIR VG A++LA ++ + Q D +L +V VG+++A + Sbjct: 514 FLFALGIRDVGESTAQNLANHFGTLDAIRQA----------DLDTLKQVQDVGEVVANRL 563 Query: 613 VEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +F+Q P N+ VE L+ + V+ ++ + +++K +V TGTL ++ R +A+ + Sbjct: 564 FQFWQEPHNVEVVEDLIAQGVTWQDVVPQEIADNPLKDKTVVLTGTLTQLTRDQAKALLQ 623 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 QLG VS +S KTD +I G+ GSKL KAQ+LGVKI++E++ + Sbjct: 624 QLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELI 667 >gi|161524425|ref|YP_001579437.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616] gi|189350820|ref|YP_001946448.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616] gi|254781276|sp|A9AIK9|DNLJ_BURM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|160341854|gb|ABX14940.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616] gi|189334842|dbj|BAG43912.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616] Length = 691 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 260/731 (35%), Positives = 394/731 (53%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L R + Sbjct: 1 MARTQAEPPASQPDVRA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLES 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P+ P ++GG + V H P LSL + +D+ F R+ K Sbjct: 57 DHPDLV---TPDSPTQRVGGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L + +P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+P Sbjct: 174 LKLKGDRVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L LG PVN G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ I +Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGAVLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S + + Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMNATIDEL--- 563 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 + V VG I+A++I +F+ N +E L P K + Sbjct: 564 -------LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD +I G GSKL KA+ LG+ + Sbjct: 617 GKTVVLTGTLPNLTRDDAKEMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEALGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 677 LDEDGLHQLLE 687 >gi|294504743|ref|YP_003568805.1| DNA ligase [Yersinia pestis Z176003] gi|262362805|gb|ACY59526.1| DNA ligase [Yersinia pestis D106004] gi|262366729|gb|ACY63286.1| DNA ligase [Yersinia pestis D182038] gi|294355202|gb|ADE65543.1| DNA ligase [Yersinia pestis Z176003] Length = 656 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 242/698 (34%), Positives = 396/698 (56%), Gaps = 47/698 (6%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 + +H+ Y+ P I D+EYD + ++ + P+L + + P ++G + Sbjct: 1 MRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTN---DSPTQRVGAAPLDAFE 57 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 +V H +P LSL+ +++ E F R++ + + + F E K+DG +++ YE G+ Sbjct: 58 QVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAE--PLTFCCELKLDGLAVSLLYENGE 115 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMI 206 V AA RGDG +GE+++A +R I IP L N+P +EVRGEV++ + F LN+E Sbjct: 116 LVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAGFEQLNEEAR 175 Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCL 264 G K +ANPRNAA+G LR+L+P R L FF +G+G + + L + + Sbjct: 176 RKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHIQCLMQFKAW 235 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 G PV+ V+ ++++Y +++ R+ L +DIDG+V KVD+ +LQ+QLG AR+PRW Sbjct: 236 GLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLALQEQLGFVARAPRW 295 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 + KF ++ T++ +++ Q+GRTG +TPVARLEPV + G +++NATLHN D I+ L Sbjct: 296 ATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIERL-- 353 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 +R+GD V+V+RAG+VIP+VV +++ +R D + +FPS CP+C S + R Sbjct: 354 ---------GLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGSDIERV 404 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 A RCTGGL C+AQ+ E LKHFVSR A +++G+G + ++ + + + Sbjct: 405 EGE------AVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQ----YV 454 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 PAD+F L + T ++ G S NL ++ K + + RF+++LGIR VG Sbjct: 455 ENPADLFQLTAGKLTGLDRM------GPKSAQNLIAALEKAKQTTFARFLYALGIREVGE 508 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 A +LA ++ + N D +L VP VG+++A+ ++ F N Sbjct: 509 ATAANLAAHFRTLDNLRAA----------DIETLKSVPDVGEVVAKHVMNFLSEEHNQKV 558 Query: 625 VEALLKEVSPSIGRH--EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILS 682 +E L K VS + + S K +V TG+L + R +A++ +T LGA VS +S Sbjct: 559 IEELEKVVSWPEPQQIVVEESDSPFAGKTVVLTGSLTILSRDEAKDRLTALGAKVSGSVS 618 Query: 683 RKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +KT ++I G+ GSKL KAQ+LG+K+++E + + LL + Sbjct: 619 KKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLLGE 656 >gi|307261779|ref|ZP_07543445.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868597|gb|EFN00408.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 676 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 255/707 (36%), Positives = 404/707 (57%), Gaps = 46/707 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 10 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 66 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 67 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 125 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR I IP L+ N P +EVRGEV++ + Sbjct: 126 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 185 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254 F LN+ + G K +ANPRNAA+G LR+L+P R L +G+G ++ + Sbjct: 186 FETLNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 245 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 246 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 305 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 306 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 365 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 366 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 414 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 415 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 468 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L+ ++ G+ S N +SI K +N +L RF+ Sbjct: 469 MERE----LVHTPADLFKLEHTTLMRLERM------GEKSAQNALNSIEKAKNTTLARFL 518 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 519 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 568 Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + V + + ++ K +V TGTL ++ R +A+ + Sbjct: 569 FWQEPHNVAVVEDLISQGVHWQNVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 628 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 629 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGE 675 >gi|186476101|ref|YP_001857571.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815] gi|254781277|sp|B2JID1|DNLJ_BURP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|184192560|gb|ACC70525.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815] Length = 683 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 259/722 (35%), Positives = 393/722 (54%), Gaps = 51/722 (7%) Query: 4 RQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 R +P A S + L E+ + YY +P + D+EYD L + I P Sbjct: 3 RTQVPDPATSAP--AERALWLRDELERANYAYYVLDQPDLPDAEYDRLFKELQQIESEHP 60 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 DL P+ P ++GGE+ V H +P LSL ++ ED+ F R+ Sbjct: 61 DLI---TPDSPTQRVGGEVASGFRPVVHDMPMLSLNNGFSDEDIAAFDKRVSDTLH---H 114 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IP 182 + + E K DG I++RY G+F AA RGDG +GEDV+ +R I +IP L +P Sbjct: 115 TPVDYACELKFDGLAISLRYVDGQFTQAATRGDGATGEDVTENVRTIRSIPLKLKGKRVP 174 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVH 241 ++++VRGEV + + DF LN G++ +ANPRNAA+G LR+L+P R L+FF + Sbjct: 175 KLVDVRGEVLMFRRDFDKLNQRQRDAGQREFANPRNAAAGSLRQLDPKMTAQRPLSFFAY 234 Query: 242 GLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G+G I E+L +G PVN+ G++ +++++ R LPYDID Sbjct: 235 GIGVLDGIEMPGTHSELLDWYHEMGLPVNSERAVVQGAEGVLGFFHKVGEKRDKLPYDID 294 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKV+ Q LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARLEP Sbjct: 295 GVVYKVNRRDEQDALGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARLEP 354 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 355 VFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVGALLER 403 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R PDA+ F P+ CP+C S + R + A RC+GGL C AQ+ + L HF R A Sbjct: 404 RPPDAREFVMPTQCPVCGSAIERLPDE------AIARCSGGLFCPAQRKQALWHFAQRRA 457 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+GLG++ +D + +R PAD+F L + + F + S NL D Sbjct: 458 LDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLID 507 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 S+ K ++ +L RFI++LGIRHVG A+ LA+++ S L+ Sbjct: 508 SLEKAKHTTLARFIYALGIRHVGESTAKDLARHFGSLDPIMSAT----------VEELLE 557 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IENKKLVFTGT 657 V VG I+A+AI +F+ N +E L + + + K +V TGT Sbjct: 558 VNDVGPIVAEAIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAPKAPQGVLAGKTVVLTGT 617 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L + R +A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ L Sbjct: 618 LPNMGRDEAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 677 Query: 718 LQ 719 L+ Sbjct: 678 LE 679 >gi|254247879|ref|ZP_04941200.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184] gi|124872655|gb|EAY64371.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184] Length = 691 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 262/731 (35%), Positives = 395/731 (54%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L R + Sbjct: 1 MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLET 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 57 DHPELV---TPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE+G FV AA RGDG +GEDV+ +R I +IP Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L +P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+ Sbjct: 174 LKLKGKHVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L LG PVN + G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGALLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI+ LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 L+ V VG I+A++I +F+ N +E L P K + Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 677 LDEDGLHQLLE 687 >gi|134296034|ref|YP_001119769.1| DNA ligase [Burkholderia vietnamiensis G4] gi|166215568|sp|A4JF81|DNLJ_BURVG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|134139191|gb|ABO54934.1| DNA ligase, NAD-dependent [Burkholderia vietnamiensis G4] Length = 691 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 258/731 (35%), Positives = 394/731 (53%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L + Sbjct: 1 MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L P+ P ++GG + V H P LSL ++ +D+ F R+ K Sbjct: 57 DHPELV---TPDSPTQRVGGAVASGFTPVVHDAPMLSLNNGFSDDDIVAFDKRVADALDK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE+G FV A+ RGDG +GEDV+ +R I +IP Sbjct: 114 PTDLAGSVTDPVEYACELKFDGLAISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L ++P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+P Sbjct: 174 LKLKGAHVPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L LG PVN G++ ++ ++ Sbjct: 234 QRPLSFFSYGIGVLDGMPMPDTHSALLDWYEALGLPVNRERAVVRGAQGLLEFFRKVGER 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV ++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGALLERRPVDAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI+ LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLDPIMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 L+ V VG I+A++I +F+ N ++ L P K + Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIDQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 677 LDEDGLHQLLE 687 >gi|307257368|ref|ZP_07539138.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864218|gb|EFM96131.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 682 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 255/707 (36%), Positives = 403/707 (57%), Gaps = 46/707 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR I IP L+ N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254 F ALN+ + G K +ANPRNAA+G LR+L+P R L +G+G ++ + Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L+ ++ S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKLEHTTLMRLERMGG------KSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + V + + ++ K +V TGTL ++ R +A+ + Sbjct: 575 FWQEPHNVAVVEDLISQGVHWQNVIQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLVKAQELGVKVLTEQEFIALTGE 681 >gi|83720010|ref|YP_442546.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264] gi|257138755|ref|ZP_05587017.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264] gi|123753789|sp|Q2SX03|DNLJ_BURTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|83653835|gb|ABC37898.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264] Length = 691 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 264/726 (36%), Positives = 398/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E S Q K + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEP-SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE+ V H P LSL ++ +D+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + +IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +++VRGEV + + DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRMLDVRGEVLMFRRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++ +++ + + R +LPYD Sbjct: 241 AYGIGVLDGVEMPDTHSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV + Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVF 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C SRV R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTECPECGSRVERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S L Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIDEL 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E L + P + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 KLLEGH 689 >gi|206560458|ref|YP_002231222.1| DNA ligase [Burkholderia cenocepacia J2315] gi|254781275|sp|B4ECN6|DNLJ_BURCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|198036499|emb|CAR52396.1| DNA ligase [Burkholderia cenocepacia J2315] Length = 691 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 261/731 (35%), Positives = 393/731 (53%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L R + Sbjct: 1 MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLET 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 57 DHPELV---TPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE G FV AA RGDG +GEDV+ +R I +IP Sbjct: 114 ATDLAGSVTDPVEYACELKFDGLAISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L +P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+ Sbjct: 174 LKLKGKHVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L G PVN + G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHTALLDWYEAFGLPVNRERAVVHGAEGLLDFFRKVGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGALLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI+ LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 L+ V VG I+A++I +F+ N +E L P K + Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 677 LDEDGLHQLLE 687 >gi|126736446|ref|ZP_01752187.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2] gi|126713984|gb|EBA10854.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2] Length = 715 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 305/713 (42%), Positives = 437/713 (61%), Gaps = 16/713 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 +P+ +LS EQA KELS L +++ + Y++ P I D+ YDALKRR AI FPDL Sbjct: 15 VPVASLSPEQATKELSWLATQLNAANTAYHRDDAPDISDATYDALKRRNAAIEAQFPDLK 74 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R + P +GG++ KV H + LSL ++ +D+ +F RI ++ D + Sbjct: 75 RQ---DSPSETVGGQIAEGFGKVKHVVRMLSLGNAFDDDDVHEFDQRIRKYLGLAADALL 131 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 +T EPKIDG +++RYE GK + AA RGDG +GE+V+ R I IP ++ P+++E Sbjct: 132 TYTAEPKIDGLSLSLRYEDGKLIQAATRGDGETGENVTNNARTIADIPAKVN-GAPDVLE 190 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245 VRGEVY+S +DF ALN VG K +ANPRNAA+G LR+L+ +R L FF + G Sbjct: 191 VRGEVYMSHDDFTALNARQAEVGGKTFANPRNAAAGSLRQLDAEITKSRPLRFFAYAWGD 250 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A+ Q + K++ LGF N + ++++Y +++ R+ L YDIDG+VYK Sbjct: 251 LSARLAQTQSGAIAKLKTLGFSTNPLTEACDGPAAMIAHYKGIEAQRANLGYDIDGVVYK 310 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ +LQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL PV +GG Sbjct: 311 VDDLTLQRRLGFRSTTPRWAIAHKFPAELAWTVLEAIDIQVGRTGALSPVARLRPVTVGG 370 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 +++NATLHNEDYI G D +G +R GRDIRVGD V V RAG+VIPKV DI + R DA Sbjct: 371 VVVSNATLHNEDYIAGRDGNGDPIREGRDIRVGDWVQVYRAGDVIPKVKDIDLARRPKDA 430 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 P+ P+ CP C S +R+ + A RCTGG+ C AQ +E+LKHF+SR AF+IEG Sbjct: 431 MPYQMPARCPECGSDAIRE------EGDAVRRCTGGIICPAQAVEKLKHFISRTAFDIEG 484 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F+ I PADIFTL+ R +++N G+GD S NL+D+I+++ Sbjct: 485 LGAKQVEQFYAD----GWIATPADIFTLRVRFSEGLQQLKNREGWGDKSAANLFDAIDEK 540 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R ISL R I+SLGIRHVG A LA +Y S+ F Q + W L + VG Sbjct: 541 REISLARVIYSLGIRHVGENSAALLANHYTSWTAFEQAMTAAQIGEGHAWDELNNIDGVG 600 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++A +++ Q +++ L+KE+ + S + K +VFTGTL+++ R + Sbjct: 601 AVMATSLITTMQQEAERASIDQLIKELDVQ-DAEARATDSPVAGKTVVFTGTLERMTRAE 659 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 A+ LGA VS +S KTDI+I G GSK +KA LG++ M+E+ +L L+ Sbjct: 660 AKARAETLGAKVSGSVSAKTDILIAGPGAGSKAKKAADLGIETMDEDAWLSLI 712 >gi|307132386|ref|YP_003884402.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937] gi|306529915|gb|ADM99845.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937] Length = 683 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 257/726 (35%), Positives = 406/726 (55%), Gaps = 52/726 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +++ P + +S + + +L ++ YH+ Y+ P I D+EYD L + Sbjct: 1 MLEKESKPADDISTVSVQ--IEALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKTLEQ 58 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 A P+L P+ P ++G + + H +P LSL+ +++ F RI + Sbjct: 59 AHPELV---TPDSPTQRVGATPLDAFDTIAHEVPMLSLDNVFDETSFLAFSKRINDRLK- 114 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179 +D + F E K+DG +++ YE G V AA RGDG +GE+++A IR + IP L Sbjct: 115 -NDGELTFCCELKLDGLAVSLLYENGLLVRAATRGDGTTGENITANIRTVGAIPLRLRGD 173 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 NIP+ +EVRGEV++ F ALN+E G K +ANPRNAA+G LR+L+P TR L F Sbjct: 174 NIPQRLEVRGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTF 233 Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 +G+G ++ L + R G PV++ +R ++ +Y +++ R TL + Sbjct: 234 LCYGVGLVEGGALPDTHWQRLMQFRDWGLPVSDRIRLCTGSDAVLDFYRQVEQERETLGF 293 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+V KV+E +LQ++LG AR+PRW ++ KF ++ T L D++ Q+GRTG +TPVAR Sbjct: 294 DIDGVVIKVNELTLQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVAR 353 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV + G +++NATLHN D I+ L I++GDRV V+RAG+VIP++V ++ Sbjct: 354 LEPVAVAGVVVSNATLHNADEIERL-----------GIQIGDRVAVRRAGDVIPQIVSVV 402 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ++ER DA+P FP CP+C S + R A RCTGGL C AQ+ E LKHFVS Sbjct: 403 LSERPADARPVVFPEQCPVCGSELERVDGE------AVTRCTGGLFCGAQRKEALKHFVS 456 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A ++EG+G + +D + E ++ PAD+F L T ++ G S N Sbjct: 457 RRALDVEGMGDKIIDQLVEKE----YVKTPADLFRLSAGILTGLDRM------GPKSAQN 506 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +++NK ++ + RF+++LGIR VG A SLA ++ + + A + D + Sbjct: 507 LVNALNKAKSTTFARFLYALGIRDVGEATAASLASHFGTLE----------ALQSADLEA 556 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-----KEVSPSIGRHEKNVSSEIENKKL 652 L +V VG ++A + F N ++ L+ + + S K + Sbjct: 557 LQQVQDVGIVVATHVRNFLDEAHNQQVIQELISENIGIHWPAPVVVDVEASDSPFAGKTV 616 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG+L + R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+++++E Sbjct: 617 VLTGSLTLLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLTKAQELGIEVIDEA 676 Query: 713 QFLFLL 718 + + LL Sbjct: 677 EMMRLL 682 >gi|107028796|ref|YP_625891.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054] gi|105897960|gb|ABF80918.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054] Length = 746 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 261/731 (35%), Positives = 395/731 (54%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L R + Sbjct: 56 MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLET 111 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 112 DHPELV---TPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAK 168 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE+G FV AA RGDG +GEDV+ +R I +IP Sbjct: 169 TTDLAGSVTDPVEYACELKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIP 228 Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L +P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+ Sbjct: 229 LKLKGKHVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITA 288 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L LG PVN + G++ ++ ++ Sbjct: 289 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEK 348 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 349 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 408 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 409 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 457 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 458 EVVGALLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 511 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 512 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 561 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI+ LGIRHVG A+ LAK++ S Sbjct: 562 EKSAQNLIDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 613 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 L+ V VG I+A+++ +F+ N +E L P K + Sbjct: 614 --SIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 671 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ + Sbjct: 672 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 731 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 732 LDEDGLHQLLE 742 >gi|190150622|ref|YP_001969147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263969|ref|ZP_07545570.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|254781246|sp|B3H275|DNLJ_ACTP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|189915753|gb|ACE62005.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870658|gb|EFN02401.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 682 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 254/707 (35%), Positives = 403/707 (57%), Gaps = 46/707 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR I IP L+ N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLNQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254 F ALN+ + G K +ANPRNAA+G LR+L+P R L +G+G ++ + Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L+ ++ S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKLEHTTLMRLERMGG------KSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + + + + ++ K +V TGTL ++ R +A+ + Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIALTGE 681 >gi|307250556|ref|ZP_07532498.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857372|gb|EFM89486.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 682 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 254/707 (35%), Positives = 404/707 (57%), Gaps = 46/707 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR + IP L+ N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254 F LN+ + G K +ANPRNAA+G LR+L+P R L +G+G ++ + Sbjct: 192 FETLNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L+ ++ G+ S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKLEHTTLMRLERM------GEKSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + V + + ++ K +V TGTL ++ R +A+ + Sbjct: 575 FWQEPHNVAVVEDLISQGVHWQNVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIALTGE 681 >gi|167855687|ref|ZP_02478444.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755] gi|167853205|gb|EDS24462.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755] Length = 675 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 258/704 (36%), Positives = 405/704 (57%), Gaps = 46/704 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 +L L +++ ++ Y+ P++ D+EYD L + P+L S + P Sbjct: 5 IETQLEHLREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITS---DSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G + ++TH IP LSL+ ++ +DL F+ RI + N I F EPK+DG Sbjct: 62 RVGAKPLDGFAQITHEIPMLSLDNAFSDDDLIGFLRRIEDRI-AINSNQIEFCCEPKLDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYISK 195 ++I Y G AA RGDG +GED++A IR I IP L N P +EVRGEV++ + Sbjct: 121 LAVSILYVDGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLEVRGEVFMPQ 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLG--KTSEIFAK 252 F LN++ +A G K +ANPRNAA+G LR+L+P + R L + +G ++ + Sbjct: 181 QGFEQLNEKALAKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGVYESDDELPT 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 ++ LQ ++ LG PVN + A + ++Y ++++ RS+L YDIDG V KV+E +LQ Sbjct: 241 THFDRLQWLKTLGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTVLKVNEITLQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 +QLG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NAT Sbjct: 301 EQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHN D I+ L I +GD V+++RAG+VIP++V ++ R +A+ +FP+ Sbjct: 361 LHNGDEIERL-----------GIAIGDTVIIRRAGDVIPQIVGVVAERRPDNAKKIAFPT 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 410 ACPVCNSAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIE 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 + E I PAD+F L ++ G+ S N SI K +N +L R Sbjct: 464 QLMERE----LIHTPADLFKLDHTTLMRLERM------GEKSANNALQSIEKAKNTTLAR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+F+LGIR VG A++LA ++ + Q D +L +V VG+++A + Sbjct: 514 FLFALGIRDVGESTAQNLANHFGTLDAIRQA----------DLDTLKQVQDVGEVVANRL 563 Query: 613 VEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +F+Q P N+ VE L+ + V ++ + +++K +V TGTL ++ R +A+ + Sbjct: 564 FQFWQEPHNVEVVEDLIAQGVKWQDVVPQEIADNPLKDKTVVLTGTLTQLTRDQAKALLQ 623 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 QLG VS +S KTD +I G+ GSKL KAQ+LGVKI++E++ + Sbjct: 624 QLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELI 667 >gi|46143448|ref|ZP_00135242.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208768|ref|YP_001053993.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae L20] gi|166215385|sp|A3N1V2|DNLJ_ACTP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126097560|gb|ABN74388.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 683 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 258/707 (36%), Positives = 405/707 (57%), Gaps = 46/707 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + P ++ Sbjct: 17 AQLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITV---DSPTQRV 73 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 74 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 132 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR I IP L+ N P +EVRGEV++ + Sbjct: 133 VSILYVDGVLSQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKG 192 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254 F LN+ + G K +ANPRNAA+G LR+L+P R L +G+G ++ + Sbjct: 193 FEELNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 252 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y +++ R TL YDIDG V KV++ LQ+Q Sbjct: 253 FERLQWLKSIGIPVNNEIRLATGREQLLAFYANIQAKRPTLGYDIDGTVLKVNDIGLQEQ 312 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 313 LGFISRSPRWAIAYKFPSQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 372 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V ++++ R +A+ FP+ C Sbjct: 373 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMDRRPENAKKIEFPTAC 421 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 422 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 475 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L ++ G+ S N +SI K +N +L RF+ Sbjct: 476 MERE----LVHTPADLFKLDHTTLMRLERM------GEKSAQNALNSIEKAKNTTLARFL 525 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ +N+ A + L V VG+++A IV Sbjct: 526 FALGIRDVGEATAQNLANHF----------HNLAAIRTATFEQLQAVQDVGEVVANRIVR 575 Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + V + + ++ K +V TGTL ++ R +A+ + Sbjct: 576 FWQEPHNVAVVEDLISQGVHWQDVIQVEIADNPLKGKNVVLTGTLTQLTRDQAKALLQSF 635 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +S KTD +I G+ GSKL KAQ+LGVKI+ E++F+ L + Sbjct: 636 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILTEQEFIALTGE 682 >gi|290476106|ref|YP_003469005.1| DNA ligase [Xenorhabdus bovienii SS-2004] gi|289175438|emb|CBJ82241.1| DNA ligase [Xenorhabdus bovienii SS-2004] Length = 672 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 246/714 (34%), Positives = 398/714 (55%), Gaps = 49/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +E ++++ L + +H+ Y+ P I D+EYD L R + P+L + + Sbjct: 1 MESIIEKINKLRATLRHHEYLYHVMDAPEIPDAEYDRLLRELKVLEEQHPELITA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H IP LSL+ +++ E F R+ + D + F E K Sbjct: 58 PTQRVGAAPLTAFGQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLK--DSRDLVFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE+++ +R I IP L N IP +E+RGEV+ Sbjct: 116 LDGLAVSLLYEDGELVQAATRGDGTTGENITVNVRTIHAIPLRLKGNNIPARVEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F LNDE G K +ANPRNAA+G LR+L+P R L F+ +G+G Sbjct: 176 MKQGGFEKLNDEARRKGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 YE L + + G PV++ V+ ++ +Y+ ++ R L +DIDG+V KVD Sbjct: 236 PASHYERLMQFKQWGLPVSDNVKLCQGTQQVIDFYHNIEQQRPILGFDIDGIVIKVDSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG A++PRW + KFA ++ T + D++ Q+GRTG +TPVARL+PV + G +++N Sbjct: 296 LQETLGFVAKAPRWATAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLKPVQVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+++RAG+VIPKVV ++ ++R ++Q F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVVIRRAGDVIPKVVGVVQDKRPAESQEVIF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P +CP+C+S + R + RCTGGL C AQ+ E LKHFVSR A +++G+G++ Sbjct: 405 PEYCPVCRSDIERVEGE------SVARCTGGLFCGAQRKEALKHFVSRRAMDVDGMGEKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E ++ PAD+F L + T ++ G S N D++ K + + Sbjct: 459 IEQLVDKE----YVKTPADLFRLSAGKLTGLERM------GPKSAQNTIDALEKSKKTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI+SLGIR VG A +L ++++ + D +LI V VG ++A Sbjct: 509 ARFIYSLGIREVGEATAANLVAHFVTLEKLRAA----------DTEALIAVQDVGGVVAS 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE----KNVSSEIENKKLVFTGTLQKIQRHKA 666 +V F+ P N ++ L+ + E V + K +V TG+L ++ R +A Sbjct: 559 HVVNFFNEPHNQTVIDDLIDNIGIYWESVETLQSDTVGNSFAGKTVVLTGSLNRLSRDEA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ +T LGA V+ +S+KTD++I G+ GSKL KA +LG+++++EE+ L LL + Sbjct: 619 KDKLTALGAKVTGSVSKKTDLVIAGEAAGSKLAKATELGIEVIDEEEMLRLLGE 672 >gi|116690045|ref|YP_835668.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424] gi|166215562|sp|A0K8E8|DNLJ_BURCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215593|sp|Q1BHI7|DNLJ_BURCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|116648134|gb|ABK08775.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424] Length = 691 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 261/731 (35%), Positives = 395/731 (54%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L R + Sbjct: 1 MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLET 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 57 DHPELV---TPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE+G FV AA RGDG +GEDV+ +R I +IP Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L +P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+ Sbjct: 174 LKLKGKHVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L LG PVN + G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGALLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI+ LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLIDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 L+ V VG I+A+++ +F+ N +E L P K + Sbjct: 559 --SIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 677 LDEDGLHQLLE 687 >gi|113460523|ref|YP_718587.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 129PT] gi|122945214|sp|Q0I2H6|DNLJ_HAES1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|112822566|gb|ABI24655.1| DNA ligase (NAD+) [Haemophilus somnus 129PT] Length = 673 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 259/707 (36%), Positives = 404/707 (57%), Gaps = 45/707 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L Q + +H+ Y+ P I DSEYD L + A+ +P+ A N P Sbjct: 8 IKQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYA---SENSPTQ 64 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G + + +V H IP LSL+ ++ ED F+ RI +S+ F EPK+DG Sbjct: 65 RVGAKPLSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRL-IHVHHSLTFCCEPKLDG 123 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 ++I Y G+ V AA RGDG +GED++A IR I IP ++L+ N P +EVRGEV++S+ Sbjct: 124 LAVSILYINGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVFMSQ 183 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI-FAKG 253 F LN +A G K +ANPRNAA+G LR+L+P R L +G+G + Sbjct: 184 AGFEKLNKTALAKGEKTFANPRNAAAGSLRQLDPKITGQRPLMLNAYGIGIAEGVELPDT 243 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + LQ ++ +G PVNN ++ + ++ +Y +K RS+L YDIDG V K+++ LQ+ Sbjct: 244 HFARLQWLKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQQ 303 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG +++PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV + G ++NATL Sbjct: 304 QLGFISKAPRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNATL 363 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I L DI +GD V+V+RAG+VIP+++ ++ R +A+ FPS Sbjct: 364 HNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPSN 412 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S + + A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 413 CPVCDSVISKIEGE------AVARCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIEQ 466 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + E + PAD+F L + ++ S N S+ K + +L RF Sbjct: 467 LVERE----LVHTPADLFKLDQVTLMRLERMGA------KSAENALASLAKAKKTTLARF 516 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG A +LA ++ + + F N + L +V VG+++A+ I Sbjct: 517 IFALGIREVGETTALNLATHFKTLEAF----------ENATFEQLQKVQDVGEVVAKRIR 566 Query: 614 EFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ P N+ V+ L+ + + ++ + ++ K +V TGTL K+ R +A+EY+ Q Sbjct: 567 SFWSEPHNVAVVKDLIAQGIHWDDVEVKEVRDNPLKGKTVVLTGTLTKMGRSEAKEYLLQ 626 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LG VS +S KTD +I G++ GSKL KA +LG+ I++E +FL LL Sbjct: 627 LGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSENEFLALLA 673 >gi|172060972|ref|YP_001808624.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6] gi|254781273|sp|B1YSH2|DNLJ_BURA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|171993489|gb|ACB64408.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6] Length = 691 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 262/731 (35%), Positives = 393/731 (53%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L + Sbjct: 1 MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLET 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P+ P ++GGE+ V H P LSL + ED+ F R+ K Sbjct: 57 DHPDLV---TPDSPTQRVGGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L ++P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+P Sbjct: 174 LKLKGAHVPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L G PVN G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A TRL+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV ++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGALLERRPDDAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI+ LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 L+ V VG I+A++I +F+ N +E L P K + Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 677 LDEDGLHQLLE 687 >gi|312114833|ref|YP_004012429.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100] gi|311219962|gb|ADP71330.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100] Length = 777 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 301/739 (40%), Positives = 441/739 (59%), Gaps = 51/739 (6%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 E LS E A+ E +L EI+ HD Y Q + P I D+EYD L+ R +A+ AFP L Sbjct: 57 EHLSAEDAKDEHDALAAEIARHDLLY-QDAAPEISDAEYDRLRLRLNALEAAFPSLI--- 112 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 P P +G + KV H++ LSL +++ ED+ F R+ RF + D ++ T Sbjct: 113 TPESPSQTVGATPSEKFAKVRHTVRMLSLGNVFSDEDVADFAGRVRRFLKFAPDEALDVT 172 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVR 188 E KIDG +++RYE G+ AA RGDG GEDV+A +R I IP+V+ N +P + EVR Sbjct: 173 AEMKIDGLSVSLRYENGRLAVAATRGDGSEGEDVTANVRTIADIPQVIRANDVPAVFEVR 232 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GEVY+S DF ALN+ + G + +ANPRNAA+G LR+L+P R L FF G G+ Sbjct: 233 GEVYMSHADFQALNERQVGKGGRMFANPRNAAAGSLRQLDPAITAARPLRFFAWGWGEVR 292 Query: 248 EI------FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDG 301 A + +LQ + GFP+ V + +++ Y ++ R++L YDIDG Sbjct: 293 GWGEASALPADTNFGVLQAIHGWGFPLPP-VEICRSVEEMLAVYRAIEMKRASLGYDIDG 351 Query: 302 LVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPV 361 +VYKV+ LQ++LG +R+PRW +HKF+ ++A+T L IDIQ+GRTG LTPVA+L PV Sbjct: 352 VVYKVNRLDLQERLGFISRTPRWATAHKFSAEKATTVLNGIDIQVGRTGALTPVAKLAPV 411 Query: 362 NIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNER 421 +GG ++ NATLHNED I+ +D+R+GD V+V+RAG+VIP+++ ++ +R Sbjct: 412 TVGGVVVQNATLHNEDEIRR-----------KDVRIGDTVIVQRAGDVIPQILGPVLEQR 460 Query: 422 HPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAF 481 DA F FP+ CP+C S VR+ +PKTGK+ A RCTGGL C+AQ +ERL+HFVSR AF Sbjct: 461 PADAVEFVFPTLCPVCGSHAVRETHPKTGKVDAVRRCTGGLICAAQAVERLRHFVSRHAF 520 Query: 482 NIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDS 541 +IEGLG++ + FF I+ PADIFT+ R K+ G+G S NL+ + Sbjct: 521 DIEGLGEKNIQAFFDEGR----IKAPADIFTMAARDGVDLPKLSEKEGWGAQSAANLFAA 576 Query: 542 INKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINN-------------II 588 I RR ISLERFIF+LGIRHVG A+ LAK + S + + Sbjct: 577 IEARRTISLERFIFALGIRHVGETTAKLLAKTFGSLDALRAAMAEPDAAELRPGDELLLE 636 Query: 589 AHNNDDWLS---------LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRH 639 + + +D S L + +GD++AQ+IV+F+ P N AV+AL +E++ + Sbjct: 637 SASGEDKRSLHRAIILAKLNEIDGIGDVVAQSIVDFFDEPHNREAVDALRRELTIEAYKP 696 Query: 640 EKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE 699 ++ VSS + +VFTG L++ R +A+ + GA V+ +S+ T ++ G GSKL+ Sbjct: 697 DQ-VSSLLAGATVVFTGKLERFTRDEAKAQAERFGAKVAGSVSKATTYLVAGPGAGSKLK 755 Query: 700 KAQQLGVKIMNEEQFLFLL 718 KA+ LGVK+M E+++L ++ Sbjct: 756 KAEDLGVKVMTEDEWLEMI 774 >gi|221215451|ref|ZP_03588415.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1] gi|221164635|gb|EED97117.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1] Length = 691 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 260/731 (35%), Positives = 393/731 (53%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L R + Sbjct: 1 MARTQAEPPASQPDARA----AWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLES 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P+ P ++GG + V H P LSL + +D+ F R+ K Sbjct: 57 DHPDLV---TPDSPTQRVGGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVL-SLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L +P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+P Sbjct: 174 LKLKGERVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L LG PVN G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ I +Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGAVLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S + + Sbjct: 507 EKSAQNLLDSLKKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMNATIDEL--- 563 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 + V VG I+A++I +F+ N +E L P K + Sbjct: 564 -------LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD +I G GSKL KA+ LG+ + Sbjct: 617 GKTVVLTGTLPNLTRDDAKEMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKAEALGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 677 LDEDGLHQLLE 687 >gi|171322051|ref|ZP_02910925.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5] gi|171092642|gb|EDT37943.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5] Length = 691 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 260/731 (35%), Positives = 393/731 (53%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L + Sbjct: 1 MARTQAEPPASQPEARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLET 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L P+ P ++GGE+ V H P LSL + ED+ F R+ K Sbjct: 57 DHPELV---TPDSPTQRVGGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALNK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + E K DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP Sbjct: 114 TTDLAGSVTEPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L ++P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+P Sbjct: 174 LKLKGAHVPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L G PVN G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGVPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGALLDRRPDDAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELS----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI+ LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 L+ V VG I+A++I +F+ N +E L P K + Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 677 LDEDGLHQLLE 687 >gi|163747147|ref|ZP_02154503.1| DNA ligase, NAD-dependent [Oceanibulbus indolifex HEL-45] gi|161379708|gb|EDQ04121.1| DNA ligase, NAD-dependent [Oceanibulbus indolifex HEL-45] Length = 685 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 290/686 (42%), Positives = 419/686 (61%), Gaps = 15/686 (2%) Query: 35 YYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 Y+ P I D+EYDALKRR AI +PDL R + P ++G + KV H++ Sbjct: 12 YHTEDAPEISDAEYDALKRRNAAIEARYPDLKRD---DSPTEQVGAPVAEGFGKVRHAVS 68 Query: 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALR 154 LSL ++ E++ F RI ++ + D + +T EPKIDG +++RYE G V AA R Sbjct: 69 MLSLANAFDAEEVTDFDARIRKYLGVEADAPLAYTAEPKIDGLSLSLRYENGLLVQAATR 128 Query: 155 GDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYA 214 GDG GE+V+A R I IP + P+++EVRGEVY+S DF ALN+ G K +A Sbjct: 129 GDGAVGENVTANARTIQDIPHQIDE-APDLLEVRGEVYMSHADFAALNERQAERGGKTFA 187 Query: 215 NPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVR 273 NPRNAA+G LR+L+ R L FF + G S A+ Q + ++ LGF N Sbjct: 188 NPRNAAAGSLRQLDAEITRARPLRFFAYAWGALSAPLAETQKGAIDRLAKLGFVTNPLTA 247 Query: 274 QANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK 333 + +V++Y ++++ R+TL YDIDG+VYKVD+ +LQ++LG R+ +PRW I+HKFA + Sbjct: 248 LCDGPSDMVAHYAKIEAQRATLGYDIDGVVYKVDDLALQERLGFRSTTPRWAIAHKFAAE 307 Query: 334 QASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGR 393 A TRL IDIQ+GRTG L+PVARL+PV +GG +++NATLHNEDYIKGLD+ G +RGG+ Sbjct: 308 LAWTRLEGIDIQVGRTGALSPVARLQPVTVGGVVVSNATLHNEDYIKGLDSKGAEIRGGK 367 Query: 394 DIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLV 453 DIRVGD V + RAG+VIPKV D+ +++R DA PF FPS CP C S +R+ Sbjct: 368 DIRVGDWVQIYRAGDVIPKVADVDLSKRPKDAAPFVFPSVCPECGSDAIREPG------D 421 Query: 454 AAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTL 513 A RCTGGL C AQ +E+LKHFV+R AF+I+GLG +Q++ F+ I PADIFTL Sbjct: 422 AVRRCTGGLICPAQAVEKLKHFVARGAFDIDGLGAKQVEQFYHD----GWIAEPADIFTL 477 Query: 514 QRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKY 573 + R +++N G+G S NL+ +I +R I + R IF+LGIRHVG + +A + Sbjct: 478 KERFGNGVQQLKNREGWGPKSADNLFQAIKDKRKIPMSRLIFALGIRHVGDAASNLIALH 537 Query: 574 YLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVS 633 Y + +F + W LI V VG ++A ++V + +++ L+ ++ Sbjct: 538 YGDWDSFETAMAEARGLEGPAWDDLIAVDGVGSVMAGSLVSAFAQEAERASIDRLVAHLT 597 Query: 634 PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDN 693 S + K +VFTGTL+K+ R +A+ +LGA VS +S KTDI++ G Sbjct: 598 VVPTERPDTEGSPVAGKTVVFTGTLEKMSRAEAKARAERLGAKVSGSVSAKTDILVAGPG 657 Query: 694 PGSKLEKAQQLGVKIMNEEQFLFLLQ 719 GSK +KA LG++ ++E+ +L L++ Sbjct: 658 AGSKAKKAADLGIETLDEDGWLALIE 683 >gi|307246220|ref|ZP_07528301.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255203|ref|ZP_07537019.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259638|ref|ZP_07541362.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852829|gb|EFM85053.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861831|gb|EFM93809.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866283|gb|EFM98147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 682 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 253/707 (35%), Positives = 403/707 (57%), Gaps = 46/707 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR + IP L+ N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254 F ALN+ + G K +ANPRNAA+G LR+L+P R L +G+G ++ + Sbjct: 192 FEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L+ ++ S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKLEHTTLMRLERMGG------KSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + + + + ++ K +V TGTL ++ R +A+ + Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGE 681 >gi|165976722|ref|YP_001652315.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190359223|sp|B0BQN6|DNLJ_ACTPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|165876823|gb|ABY69871.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 682 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 252/707 (35%), Positives = 402/707 (56%), Gaps = 46/707 (6%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 +L +L Q++ ++ Y+ P++ D+EYD L + P+ + + P ++ Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITA---DSPTQRV 72 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G + +VTH IP LSL+ ++ E+L F+ R+ + + ++ F EPK+DG Sbjct: 73 GAKPLDGFAQVTHEIPMLSLDNAFSDEELDGFLRRMESYITEDPH-TLAFCCEPKLDGLA 131 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKND 197 ++I Y G AA RGDG +GED+++ IR + IP L+ N P +EVRGEV++ + Sbjct: 132 VSILYVDGVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKG 191 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFAKGQ 254 F LN+ + G K +ANPRNAA+G LR+L+P R L +G+G ++ + Sbjct: 192 FETLNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATH 251 Query: 255 YEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQ 314 +E LQ ++ +G PVNN +R A ++++Y ++++ R TL YDIDG V KV++ LQ+Q Sbjct: 252 FERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQ 311 Query: 315 LGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLH 374 LG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++NATLH Sbjct: 312 LGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 371 Query: 375 NEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFC 434 N D I+ L I +GD V+++RAG+VIP++V +++ R +A+ FP+ C Sbjct: 372 NGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC 420 Query: 435 PICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFF 494 P+C+S VVR A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ ++ Sbjct: 421 PVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQL 474 Query: 495 FKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFI 554 + E + PAD+F L+ ++ S N +SI K +N +L RF+ Sbjct: 475 MERE----LVHTPADLFKLEHTTLMRLERMGG------KSAQNALNSIEKAKNTTLARFL 524 Query: 555 FSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVE 614 F+LGIR VG A++LA ++ + + L V VG+++A IV Sbjct: 525 FALGIRDVGEATAQNLANHFHNLDAIRAAT----------FEQLQEVQDVGEVVANRIVR 574 Query: 615 FYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQL 673 F+Q P N+ VE L+ + + + + ++ K +V TGTL ++ R +A+ + Sbjct: 575 FWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSF 634 Query: 674 GAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++F+ L + Sbjct: 635 GCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIALTGE 681 >gi|284006788|emb|CBA72055.1| DNA ligase [Arsenophonus nasoniae] Length = 670 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 251/712 (35%), Positives = 401/712 (56%), Gaps = 46/712 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 +++ + L+ L+Q++ +H+ Y+ P I D+EYD L + + P+ + + Sbjct: 1 MKEQQNYLARLKQQLRHHEYLYHVLDTPEIPDAEYDRLMQELKKLEAEHPEWITA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H IP LSL+ +++ E F R++ + +++ + F E K Sbjct: 58 PTQRVGAAPLTAFEQVRHEIPMLSLDNVFDEESYLAFDKRVHDRLK--NNSQLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE+G+ V AA RGDG +GE+++A IR I IP L NIPE IE+RGEV+ Sbjct: 116 LDGLAVSLLYEQGELVQAATRGDGTTGENITANIRTIRAIPLRLTGDNIPERIEIRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGK-TSEIF 250 ++ F LN+E K +ANPRNAA+G LR+L+P R L FF +G G Sbjct: 176 MTHRGFEKLNEEARRNDGKIFANPRNAAAGSLRQLDPRITAKRPLAFFCYGFGLLAGGQL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ L + + G PV++ + +++YY++++ R L +DIDG+V KVD Sbjct: 236 PASHYQCLMQFKKWGLPVSDKIALCQNSQQVLAYYHQIEHARLGLGFDIDGVVIKVDPLQ 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW + KF ++ T L D++ Q+GRTG +TPVARL PV + G +++N Sbjct: 296 LQEELGFVARAPRWATAFKFPAQEQITLLHDVEFQVGRTGAITPVARLAPVLVAGVIVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+++RAG+VIP++V+++ + R D++ F Sbjct: 356 ATLHNADEIERL-----------GVRIGDTVVIRRAGDVIPQIVNVLTDRRPIDSREIRF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S + R A RCTGGL C+AQ+ LKHFVSR A +I+G+G + Sbjct: 405 PIHCPVCGSAIERIEGE------AVIRCTGGLICAAQRKGALKHFVSRRAMDIDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D E + AD++ L ++ G S NL ++++K + +L Sbjct: 459 IDQLVAKE----YVTTAADLYRLNLDILARLERM------GPKSAQNLINALDKSKQTTL 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFI++LGIR VG A +LA +Y + + D SL +V VG+I+A+ Sbjct: 509 ARFIYALGIREVGEATASNLAAHYTTLTSLMAA----------DIESLKKVQDVGEIVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHE-KNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 IV F+ N V L+ E+ S R K S K +V TGTL ++ R + ++ Sbjct: 559 HIVNFFHEQHNRDVVNQLVNEIGISWPRMPAKKTDSPFTGKTIVLTGTLNRLTRDELKDK 618 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 + LGA V+ +S+KTD++I G+ GSKL KA +LG+KI+NE++ + LL+ + Sbjct: 619 LILLGAKVTGSVSKKTDLVIAGEAAGSKLTKANELGIKIINEDELIALLEDH 670 >gi|170733380|ref|YP_001765327.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3] gi|254781274|sp|B1JUF5|DNLJ_BURCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|169816622|gb|ACA91205.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3] Length = 691 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 261/731 (35%), Positives = 395/731 (54%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L R + Sbjct: 1 MARTQAEPPASQPDARA----AWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLET 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 57 DHPELV---TPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE+G FV AA RGDG +GEDV+ +R I +IP Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L +P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+ Sbjct: 174 LKLKGKHVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L LG PVN + G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGALLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI+ LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLIDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 L+ V VG I+A+++ +F+ N +E L P K + Sbjct: 559 --SIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 677 LDEDGLHQLLE 687 >gi|170718864|ref|YP_001784038.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 2336] gi|254781341|sp|B0USD9|DNLJ_HAES2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|168826993|gb|ACA32364.1| DNA ligase, NAD-dependent [Haemophilus somnus 2336] Length = 667 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 258/707 (36%), Positives = 404/707 (57%), Gaps = 45/707 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L Q + +H+ Y+ P I DSEYD L + A+ +P+ A N P Sbjct: 2 IKQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYA---SENSPTQ 58 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G + + +V H IP LSL+ ++ ED F+ RI +S+ F EPK+DG Sbjct: 59 RVGAKPLSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRL-IHVHHSLTFCCEPKLDG 117 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 ++I Y G+ V AA RGDG +GED++A IR I IP ++L+ N P +EVRGEV++S+ Sbjct: 118 LAVSILYINGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPTRLEVRGEVFMSQ 177 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI-FAKG 253 F LN +A G K +ANPRNAA+G LR+L+P R L +G+G + Sbjct: 178 AGFEKLNKTALAKGEKTFANPRNAAAGSLRQLDPKITGQRPLMLNAYGIGIAEGVELPDT 237 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 + LQ ++ +G PVNN ++ + ++ +Y +K RS+L YDIDG V K+++ LQ+ Sbjct: 238 HFARLQWLKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQQ 297 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 QLG +++PRW I++KF ++ T L +++ Q+GRTG +TPVA+LEPV + G ++NATL Sbjct: 298 QLGFISKAPRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNATL 357 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I L DI +GD V+V+RAG+VIP+++ ++ R +A+ FP+ Sbjct: 358 HNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPTN 406 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S + + A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + ++ Sbjct: 407 CPVCDSVISKIEGE------AVARCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIEQ 460 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 + E + PAD+F L + ++ S N S+ K + +L RF Sbjct: 461 LVERE----LVHTPADLFKLDQVTLMRLERMGA------KSAENALASLAKAKKTTLARF 510 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG A +LA ++ + + F N + L +V VG+++A+ I Sbjct: 511 IFALGIREVGETTALNLATHFKTLEAF----------ENATFEQLQKVQDVGEVVAKRIR 560 Query: 614 EFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+ P N+ V+ L+ + + ++ + ++ K +V TGTL K+ R +A+EY+ Q Sbjct: 561 SFWSEPHNVAVVKDLIAQGIHWDNVEVKEVRDNPLKGKTVVLTGTLTKMGRSEAKEYLLQ 620 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LG VS +S KTD +I G++ GSKL KA +LG+ I++E +FL LL Sbjct: 621 LGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSENEFLALLA 667 >gi|89900985|ref|YP_523456.1| DNA ligase [Rhodoferax ferrireducens T118] gi|123397178|sp|Q21WC8|DNLJ_RHOFD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|89345722|gb|ABD69925.1| DNA ligase, NAD-dependent [Rhodoferax ferrireducens T118] Length = 690 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 261/712 (36%), Positives = 389/712 (54%), Gaps = 50/712 (7%) Query: 21 LSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGG 80 ++ L + + H YY P I D+EYD + + AI P+L P+ P ++GG Sbjct: 19 VAQLRRALHEHAHHYYVEDAPTIPDAEYDRMFQELQAIEAQHPELI---TPDSPTQRVGG 75 Query: 81 EMNLSLFKVTHSIPTLSLEKIWNIED--LRKFITRIYRFWQKKDDNS-IFFTLEPKIDGT 137 V H++P LS+ + E R F TR+ R + + + EPK DG Sbjct: 76 RALEQFASVRHAVPMLSIRTETDTEASGARNFDTRVRRELGLDEAAPAVAYVAEPKFDGL 135 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKND 197 + +RYE G V AA RGDG GEDV+ +R I IP L + P I+EVRGEVY+ ++D Sbjct: 136 AMNLRYESGILVQAATRGDGEVGEDVTQNVRTIGQIPLRLPADAPSILEVRGEVYMRRDD 195 Query: 198 FLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGK-----TSEIFA 251 F LN++ A G+K + NPRNAA+G +R+L+P R L+FF +GLG+ Sbjct: 196 FEKLNEQQRARGQKTFVNPRNAAAGAVRQLDPAIAAQRPLSFFAYGLGEVTPEQAGGPAF 255 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 YE+LQ ++ GFPV+ V A +V+YY + R LP+DIDG+VYKV+ +L Sbjct: 256 GTHYELLQALKTWGFPVSALVGLAQGATELVAYYESIARQRDALPFDIDGVVYKVNSLAL 315 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+++G R PRW ++HKF ++ T +LDID+Q+GRTG LTPVA+L PV +GG +TNA Sbjct: 316 QRRMGFVTREPRWAVAHKFPAQEQFTTVLDIDVQVGRTGKLTPVAKLAPVFVGGVTVTNA 375 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED + +D+RVGD V+V+RAG+VIP+VV +++++R P A F+ P Sbjct: 376 TLHNEDEARR-----------KDVRVGDTVIVRRAGDVIPEVVSVLLDKRQPGATEFTMP 424 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 CP+C S VR+ +RCTGGL CSAQ+ + + HF R A +EGLG++ + Sbjct: 425 RQCPVCGSAAVREEGE------VDYRCTGGLFCSAQRKQAILHFAQRRAVEVEGLGEKLV 478 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D IRI D++ L T + ++ D S N+ ++ K + +L Sbjct: 479 DQLVD----GHVIRILPDLYRL------GLTALASLDRMADKSAQNILQALEKSKQTTLP 528 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+F LGIRHVG A+ LA+++ S A + L++V +G I+AQ+ Sbjct: 529 RFLFGLGIRHVGEATAKELARHFGSLD----------AVMDASLEQLLQVNDIGPIVAQS 578 Query: 612 IVEFYQNPRNICAVEA-LLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + F+ P N VE V+ G + + K V TGTL + R +A++ + Sbjct: 579 LRTFFDQPHNREVVEQLRACGVTWQEGPPAPVTPTPLSGKTFVITGTLPSMSRDEAKDLI 638 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 G V+ +S+KT ++ G GSKL KAQ+LGV +++E LL ++ Sbjct: 639 EAAGGKVAGSVSKKTTFVVAGTEAGSKLTKAQELGVAVLDEAGLKELLDGHS 690 >gi|219850499|ref|YP_002464932.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485] gi|254781282|sp|B8GAC1|DNLJ_CHLAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219544758|gb|ACL26496.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485] Length = 681 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 264/715 (36%), Positives = 387/715 (54%), Gaps = 55/715 (7%) Query: 19 KELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKI 78 + ++ L I +D YY PI+ D+EYDAL A+ A P+L P+ P ++ Sbjct: 8 QRINELRTLIRRYDYHYYVLDDPIVSDAEYDALMNELRALEAAHPELI---TPDSPTQRV 64 Query: 79 GGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTM 138 G KV H P LSL + DL + R+ R + D ++ + +EPKIDG Sbjct: 65 SGTPASQFAKVQHPQPMLSLGNAFTTTDLLAWRDRVLRLLGQ--DTAVAYVVEPKIDGLA 122 Query: 139 ITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-----------IPEIIEV 187 + + Y G+FV A RGDG GEDV+A +R I +IP +L +P +IEV Sbjct: 123 VALTYHDGQFVQGATRGDGEVGEDVTANLRTISSIPLLLHPPDGGHDRDVPTALPSLIEV 182 Query: 188 RGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKT 246 RGEVY+ DF ALND + A G K +ANPRNAA+G LR+ +P R L FF +G+G Sbjct: 183 RGEVYMRTADFEALNDRLAAAGEKIFANPRNAAAGSLRQKDPAITAARPLRFFAYGVGPV 242 Query: 247 SEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKV 306 + GQ++ L+ +R LGFPVN VR+ F +++Y + + R L Y+ DG+V K+ Sbjct: 243 EGVELTGQWQTLRYLRMLGFPVNQDVRRFTDFDEVLAYCEQWMARRDELTYEADGMVIKI 302 Query: 307 DEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGA 366 D+F+ Q++LG R PRW I+ KF ++A TRLL+I + +GRTG++TP A LEPV IGG Sbjct: 303 DDFAQQRELGVVGRDPRWAIAFKFPPREAITRLLNITVNVGRTGVVTPNAELEPVQIGGV 362 Query: 367 LITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQ 426 ++ NA+LHN DYI RDIR+GD V+VKRAG+VIP VV +V R + Sbjct: 363 IVRNASLHNADYI-----------AQRDIRIGDYVIVKRAGDVIPYVVGPVVARRDGSER 411 Query: 427 PFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 P+ FP+ CP C S + R+ AA RC C AQ + RL+HF SR A +I GL Sbjct: 412 PWQFPTHCPACGSPLEREPGE------AAWRCNNFGICPAQLVRRLEHFASRAALDIVGL 465 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G++Q + F + +R AD+F L+ GFG + NL ++I+ R Sbjct: 466 GERQAELFVQR----GLVRDVADLFYLKAEDFAGLE------GFGPKRIANLLNAIDAAR 515 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 L+R I LGIR+VG+ A++L S + ++P +G Sbjct: 516 QRPLDRLIVGLGIRYVGSVAAQALVNSLGSLDAIMNARQEELE----------QIPGIGP 565 Query: 607 IIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++A +IV+F+ +P N +E L V + G + S + + V TGTL + R + Sbjct: 566 VVAASIVDFFAHPENRQLIEKLRAAGVQMNAGPQRERKSDVLAGQTFVLTGTLPSLTREQ 625 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A + G V+ +S+KT+ ++ G N GSKL KAQQLG+ +++E L L+ + Sbjct: 626 ASALIIAHGGKVTDSVSKKTNYVVAGVNAGSKLAKAQQLGIPVLDEAALLALIGE 680 >gi|27381702|ref|NP_773231.1| DNA ligase [Bradyrhizobium japonicum USDA 110] gi|81735382|sp|Q89FV8|DNLJ_BRAJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|27354871|dbj|BAC51856.1| DNA ligase [Bradyrhizobium japonicum USDA 110] Length = 716 Score = 798 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 303/721 (42%), Positives = 451/721 (62%), Gaps = 13/721 (1%) Query: 2 KKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHA 61 K + L + L+ QA+ EL L E+ HD YYQ P + D+EYDAL++R +AI Sbjct: 7 KSKPLRDVAELTKAQAKVELMRLALELEGHDKRYYQDDAPTVTDAEYDALRQRFNAIEKR 66 Query: 62 FPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKK 121 FP+ +E P K+G + KV H++P LSL+ + ED+R F+ RI RF K Sbjct: 67 FPEFVSAE---SPSQKVGAAPSGRFRKVRHAVPMLSLDNAFAEEDVRDFVGRIVRFL-KL 122 Query: 122 DDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180 DD+ I F+ EPKIDG +++RYE G+ V AA RGDG GEDV+A IR + +P+ L N Sbjct: 123 DDDKIDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLEDVPQKLKGRN 182 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P+I EVRGEVY++K FLALN+ A G +ANPRN+A+G LR+ +PT +R L FF Sbjct: 183 VPDICEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPTITASRPLGFF 242 Query: 240 VHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 + G+ S + + Q M+ GF N R ++ +++++ ++ R+ L YDI Sbjct: 243 AYAWGEMSAMPEETQTGMIHWFERCGFKTNPLTRLCHSVEELIAFHQRIEEERAELDYDI 302 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG+VYKVD Q++LG +R+PRW I+HKF +QA T L DI+IQ+GRTG TPV +LE Sbjct: 303 DGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAEQAMTVLRDIEIQVGRTGSFTPVGKLE 362 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV +GG ++ N TLHNEDYIKG+ G+V+R GRDIR+GD V+++RAG+VIP+VVD++++ Sbjct: 363 PVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVLD 422 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 +R A+ F FP CP V G+ + RCTG AC Q++E LK FVSR Sbjct: 423 KRPKTAKEFHFPKTCPCPLHTDVTREETAAGEEGSRARCTGEFACPYQKIEHLKLFVSRR 482 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 AF+I+GLG++QL +FF ++ PADIFTL++R + K+E I G+G SV NL+ Sbjct: 483 AFDIDGLGEKQLQYFFDE----GFVKEPADIFTLEKRN--AKLKLEEIEGYGATSVRNLF 536 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +I RR I+LERF+++LG+RHVG A +LA+ Y S++ F + + + + Sbjct: 537 AAIESRRRIALERFVYALGMRHVGETTALALARGYGSWEAFHDACLKVAKGDEEAMADMD 596 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQ 659 + +GD + ++I +++ N VE L KEV + + +S + K +VFTG+L+ Sbjct: 597 ALDQIGDTVIKSIADYFGESHNRGIVERLTKEVEI-VDAEKPKSNSAVAGKTVVFTGSLE 655 Query: 660 KIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 K+ R +A+ +LGA VS +S+KTD+++ G GSKL +A + GVK++ E+++L L+ Sbjct: 656 KMTRDEAKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLKLIG 715 Query: 720 Q 720 + Sbjct: 716 E 716 >gi|170703080|ref|ZP_02893902.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10] gi|170132009|gb|EDT00515.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10] Length = 691 Score = 798 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 259/731 (35%), Positives = 395/731 (54%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L + Sbjct: 1 MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLET 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P+ P ++GGE+ V H P LSL + ED+ F R+ K Sbjct: 57 DHPDLV---TPDSPTQRVGGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L ++P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+P Sbjct: 174 LKLKGAHVPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L G PVN G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGALLDRRPDDAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI+ LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSE---IE 648 L+ V VG I+A++I +F+ N +E L + + + Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E++ LL+ Sbjct: 677 LDEDELHQLLE 687 >gi|152979719|ref|YP_001345348.1| NAD-dependent DNA ligase LigA [Actinobacillus succinogenes 130Z] gi|190359224|sp|A6VR16|DNLJ_ACTSZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|150841442|gb|ABR75413.1| DNA ligase, NAD-dependent [Actinobacillus succinogenes 130Z] Length = 672 Score = 798 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 263/713 (36%), Positives = 403/713 (56%), Gaps = 45/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +++ L + +H+ Y+ P I DSEYD L R A+ P+L + Sbjct: 1 MTDIQNQINQLRNTLRHHEYQYHVLDNPEIPDSEYDRLFHRLKALEQQHPELI---SADS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++TH +P LSL+ +++ E+ F+ RI DN + F EPK Sbjct: 58 PTQRVGAKPLAGFAQITHELPMLSLDNVFSDEEFYAFVKRIQERLITLPDN-LEFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I YE G+ V AA RGDG +GED++ IR I IP ++L+ N P +EVRGEV+ Sbjct: 117 LDGLAVSILYENGRLVQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPVRLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250 + + F LN+ +A G K +ANPRNAA+G LR+L+P + R L + + +G Sbjct: 177 MPQEGFDRLNEAALARGEKTFANPRNAAAGSLRQLDPKITSQRPLVWNAYSIGIAEGADL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 YE LQ ++ +G PVN +R ++ +Y ++ R L YDIDG V KV+E + Sbjct: 237 PPTHYERLQWLKSIGIPVNGEIRLCRGAENVLKFYRTIQEKRPELGYDIDGTVLKVNEIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+L+PV + G ++N Sbjct: 297 LQERLGFISKAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I L DI +GD V+V+RAG+VIP+++ ++ + R P+A+P F Sbjct: 357 ATLHNGDEIARL-----------DIAIGDTVIVRRAGDVIPQIIGVVHDRRPPNAEPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S +VR A RCTGGL C AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTLCPVCHSAIVRIEGE------AVARCTGGLFCDAQRKESLKHFVSRRAMDIDGVGAKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E IR PAD+F L ++ G+ S DS+ K + +L Sbjct: 460 IEQLVDRE----LIRTPADLFKLDLITLMRLERM------GEKSAQKALDSLEKAKKTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ N+ A D L V VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANFF----------KNLTALQTADLEQLQAVSDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ NI V L+ + EK V + + K +V TGTL ++ R++A+ Sbjct: 560 RIYVFWREQHNIDVVNDLIAQGVHWDDVEEKQVNENPFKEKTVVLTGTLSQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 + Q+GA V+ +S KT I+I GD+ GSKL KAQ LGV +M+E +FL ++ ++ Sbjct: 620 LQQMGAKVAGSVSAKTHIVIAGDSAGSKLSKAQDLGVAVMSEAEFLEIVNSFS 672 >gi|292491548|ref|YP_003526987.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4] gi|291580143|gb|ADE14600.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4] Length = 675 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 257/712 (36%), Positives = 395/712 (55%), Gaps = 47/712 (6%) Query: 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGP 74 QAR+ + +L + I+ ++ YY P++ DSEYD L R + +P+L P+ P Sbjct: 5 AQARERVETLRKLINDYNYNYYVLDSPVVPDSEYDRLMRELQNLEAQYPELVV---PDSP 61 Query: 75 LNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKI 134 ++G E +L +V H IP LSL ++ E+L F R+ + + EPK+ Sbjct: 62 TQRVGAEPLKALGEVKHEIPMLSLNNAFSEEELADFHRRVKERLG---IEQVEYAAEPKL 118 Query: 135 DGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IPEIIEVRGEVYI 193 DG +++ Y++G V A RGDG +GEDV+ +R IPT+ L + IP ++EVRGEVY+ Sbjct: 119 DGLAVSLLYQEGILVQGATRGDGVTGEDVTHNVRTIPTVSLHLRGDKIPSLLEVRGEVYM 178 Query: 194 SKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTS-EIFA 251 K F LN E +A G K + NPRNAA+G LR+L+P R L F +G+GK Sbjct: 179 PKEGFERLNREHLAKGEKTFVNPRNAAAGSLRQLDPRIAASRPLAIFCYGVGKVEQGTLP 238 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 + E+L +++ G V G YY + R LPY+IDG+V+KVD F Sbjct: 239 QRHSEVLARLKQWGLRTPPHVEVVAGLAGCQEYYQRLLERRDGLPYEIDGVVFKVDRFDQ 298 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 ++ LG AR+PRW I++KF ++ T++LDI++Q+GRTG LTPVARL+PV +GG ++NA Sbjct: 299 RQALGFVARAPRWAIAYKFPAQEELTQILDIEVQVGRTGALTPVARLQPVFVGGVTVSNA 358 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHNED I+ +D+R+GD V V+RAG+VIP+VV +I++ R PDA+ F P Sbjct: 359 TLHNEDEIRR-----------KDVRIGDTVYVRRAGDVIPEVVKVILDHRPPDARFFQMP 407 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CPIC S V++D + A RC+GGL C AQ+ E +KHF SR A +I GLG + + Sbjct: 408 TQCPICGSEVIKD------EGGAIARCSGGLYCPAQRKEAIKHFASRRAMDINGLGDKLV 461 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 D + E + AD++ L Q ++ S NL +I ++ +L Sbjct: 462 DQLIERE----LVEDVADLYHLTAEQLAGLERMGQ------KSAANLMHAIEASKHTTLP 511 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+++LGIR VG A++LA+ + S + + V +G ++A Sbjct: 512 RFLYALGIREVGEATAQALAEEFNSLEALEGASEERLQ----------EVTDIGPVVATH 561 Query: 612 IVEFYQNPRNICAVEALLKEVSPSIGRH-EKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 I F++ P N ++ L + + +K + + K V TGTL+ + R +A+E + Sbjct: 562 IAAFFRQPHNRQVIQRLREAGVCWPEKEGKKPIPQPLSGKTFVLTGTLESMTREQAKERL 621 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LG V++ +S TD ++VG NPGSKL KA+ L + +++E F LL + + Sbjct: 622 QALGGKVTSSVSSNTDYLVVGTNPGSKLTKAKDLHITLLDEGNFRNLLDEAS 673 >gi|90418183|ref|ZP_01226095.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1] gi|90337855|gb|EAS51506.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1] Length = 703 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 298/712 (41%), Positives = 441/712 (61%), Gaps = 20/712 (2%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 +E L ++A EL L EI+ HD YY+ P + D+EYD L+RR AI FP+L R Sbjct: 6 VETLDRDEAAAELERLAGEIAAHDRAYYREDAPTVTDAEYDTLRRRNAAIEARFPELIRE 65 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 + P+ ++G E++ K+ H++P LSL+ ++ ED+ F R+ RF + DD + Sbjct: 66 DSPSA---RVGTEVSEKFGKIRHAVPMLSLDNAFSDEDVADFAKRVRRFLKLDDDAPLAI 122 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 T EPKIDG +++RYEKG+ V AA RGDG +GEDV+ R I IP L PE+ EVR Sbjct: 123 TAEPKIDGLSLSLRYEKGELVSAATRGDGATGEDVTRNARTIDDIPNRLKGKAPEVFEVR 182 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS 247 GEVY+S F LN G+ YANPRNAA+G LR+L+ R L FF + G+ S Sbjct: 183 GEVYMSHAAFTDLNARQAEEGKPVYANPRNAAAGSLRQLDAGITRARKLQFFAYAWGEAS 242 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E+ + Q E++ + GFPVN +++ T G++++Y+ ++ R+ L YDIDG+VYKVD Sbjct: 243 EVPGETQTEVVAAIAGFGFPVNERMKRFETIEGLIAHYHAIEENRAGLGYDIDGVVYKVD 302 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 + +LQK+LG +RSPRW I+HKF +QA+T L I+IQ+GRTG LTPVA+L+PVN+GG + Sbjct: 303 DLALQKRLGFVSRSPRWAIAHKFPAEQATTVLRAIEIQVGRTGALTPVAKLDPVNVGGVM 362 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 + NATLHN + I+ L D+RVGD V ++RAG+VIP+V+ I+ ++R DA+P Sbjct: 363 VANATLHNAEEIERL-----------DVRVGDTVQIQRAGDVIPQVLGIVADKRPEDAEP 411 Query: 428 FSFPSFCP-ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGL 486 F+FPS CP ++ VVR+ +G RCTG AC Q+ E LK FVSR AF+IEGL Sbjct: 412 FAFPSVCPCELKTDVVREET-ASGAQSVVRRCTGEFACPFQRREHLKLFVSRKAFDIEGL 470 Query: 487 GKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR 546 G +Q+D F+ P F +R PADIF + R Q K+++ GFG+VS NL+ +I RR Sbjct: 471 GDKQIDLFYDD--PDFQVRTPADIFRMHGRNQEGLKKLKDKEGFGEVSAKNLFAAIEARR 528 Query: 547 NISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGD 606 I L+R IFSLGIRHVG A++LA+ Y +++ F + + A + + + + +G Sbjct: 529 TIPLDRLIFSLGIRHVGETTAKTLARAYGTFEAFHEAALKVAAGDEEASGEMDALDDIGG 588 Query: 607 IIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 + A F+ N+ VE L+ E+ +S + + +VFTG+L+K+ R +A Sbjct: 589 AVITATARFFSEDHNLKLVEDLVAELDVQPAEQPA-ATSPVSGQTIVFTGSLEKMTRDEA 647 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + LGA V+ +S+KTD+++ G GSKL+KA +LGV++++E+ + + Sbjct: 648 KAMAEGLGAKVAGSVSKKTDLVVAGPGAGSKLKKAAELGVEVIDEDAWFVRI 699 >gi|251793989|ref|YP_003008721.1| NAD-dependent DNA ligase LigA [Aggregatibacter aphrophilus NJ8700] gi|247535388|gb|ACS98634.1| DNA ligase, NAD-dependent [Aggregatibacter aphrophilus NJ8700] Length = 671 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 254/707 (35%), Positives = 400/707 (56%), Gaps = 45/707 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L + + YH+ Y+ +P I DSEYD L + A+ P L + + P Sbjct: 5 IQQQIDDLRKTLRYHEYQYHVLDEPQIPDSEYDRLFHQLKALEQQHPALITA---DSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++ H +P LSL+ ++ E+ F+ RI + F EPK+DG Sbjct: 62 RVGARPLSEFAQIKHELPMLSLDNAFSDEEFLAFVKRIQDRL-VFAPEPLTFCCEPKLDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 ++I Y G AA RGDG +GED++ IR I IP ++L+ N P +EVRGEV++ Sbjct: 121 LAVSILYVNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPH 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKG 253 + F LN+ + G K +ANPRNAA+G LR+L+P + R L F + +G I Sbjct: 181 DGFERLNERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQRIDLPPT 240 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E LQ ++ +G PVN+ +R + ++++Y M RS+L YDIDG V KV++ LQ+ Sbjct: 241 HFERLQWLKSIGVPVNSEIRLCDGIENVLNFYRTMMEKRSSLGYDIDGTVLKVNDIELQQ 300 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+L+PV + G ++NATL Sbjct: 301 RLGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNATL 360 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D I+ L+ I +GD V+++RAG+VIP+++ ++ + R +A+ FP+ Sbjct: 361 HNGDEIERLN-----------IAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQIVFPTH 409 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S +VR A RCTGGL C+AQ+ E LKHFVSR A NI+G+G + ++ Sbjct: 410 CPVCDSLIVRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMNIDGVGAKLIEQ 463 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E + PAD+F L T I + G S N S+ K ++ +L RF Sbjct: 464 LVDRE----LVHTPADLFKL------DLTTITRLERMGPKSAENALASLEKAKHTTLARF 513 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG IA +LA ++ + + A N D L +VP VG+++A I Sbjct: 514 IFALGIRDVGEAIALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVVANRIF 563 Query: 614 EFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ N+ V L+ + V ++ + ++K +V TGTL ++ R+ A+ + Q Sbjct: 564 VFWREEHNVAVVNDLIAQGVHWETVEVQEVKENPFKDKTVVLTGTLSQMGRNDAKVLLQQ 623 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA VS +S KTD +I G+ GSKL KA +LGV++++EE+F + Sbjct: 624 LGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFWAWVN 670 >gi|253988889|ref|YP_003040245.1| NAD-dependent DNA ligase LigA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780339|emb|CAQ83500.1| DNA ligase [Photorhabdus asymbiotica] Length = 672 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 243/714 (34%), Positives = 394/714 (55%), Gaps = 49/714 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ +++ +L + + +H+ Y+ P I D+EYD L + + P+L S + Sbjct: 1 MKSTAQQIENLRKTLRHHEYLYHVMDAPEISDAEYDRLMQELKTLEGQHPELITS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + +V H IP LSL+ +++ E F R+ + D + E K Sbjct: 58 PTQRVGAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLK--DTQDLVVCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE++++ +R I +P L NIP IEVRGEV+ Sbjct: 116 LDGLAVSLLYENGELVRAATRGDGTTGENITSNVRTINAVPLRLIGENIPARIEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + +N F LN+E G K +ANPRNAA+G LR+L+P R L F +G+G Sbjct: 176 MPQNGFEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFLCYGVGVLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 YE L + + G PV++ VR + ++ +Y +++ RSTL +DIDG+V KV+ Sbjct: 236 PASHYERLMQFKKWGLPVSDKVRVCTDSNQVIDFYRNIENQRSTLGFDIDGVVIKVNSLE 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ+ LG AR+PRW + KF ++ T + DI+ Q+GRTG +TPVARLEPV + G ++N Sbjct: 296 LQETLGFVARAPRWATAFKFPAQEQMTIVRDIEFQVGRTGAITPVARLEPVQVSGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+++RAG+VIP+VV ++ + R D+ F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIIRRAGDVIPQVVGVVEDRRPQDSDEVIF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P +CP+C + + + A RCTGGL C AQ+ E L+HFVSR A +++G+G++ Sbjct: 405 PEYCPVCGADIEKIEGE------AVARCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 +D E + PAD+F L + T ++ G S N+ D++ K + + Sbjct: 459 IDQLVDKE----YVETPADLFRLTAGKLTGLDRM------GPKSAQNVVDALEKAKKTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA Y+ D +L V VG+++A+ Sbjct: 509 ARFLYALGIREVGEATAANLAAYFGDLNKLRAA----------DEEALKEVQDVGEVVAK 558 Query: 611 AIVEFYQNPRNICAVEALLKEVS----PSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 +V F+ P N ++ L+ + P + + S K +V TG+L ++ R +A Sbjct: 559 HVVHFFNEPHNQKVIDDLIDNIGINWEPIAVTKAEKIDSPFAGKTIVLTGSLHQLSRDEA 618 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 ++ + LGA V+ +S+KTD++I G+ GSKL KA +L + +++EE+ + LL + Sbjct: 619 KDKLIALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIAVIDEEEMIRLLGE 672 >gi|300724062|ref|YP_003713378.1| DNA ligase [Xenorhabdus nematophila ATCC 19061] gi|297630595|emb|CBJ91260.1| DNA ligase [Xenorhabdus nematophila ATCC 19061] Length = 658 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 242/700 (34%), Positives = 384/700 (54%), Gaps = 49/700 (7%) Query: 28 ISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLF 87 + +H+ Y+ P I D+EYD L R A+ P+ + + P +IG + Sbjct: 1 MRHHEYLYHVMDAPEIPDAEYDRLMRELKALEEQHPEWVTA---DSPTQRIGATPLSAFE 57 Query: 88 KVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGK 147 +V H IP LSL+ +++ E F R+ + D F E K+DG +++ YE G+ Sbjct: 58 QVRHEIPMLSLDNVFDEESYLAFDKRVRDRLK--DSQDWVFCCELKLDGLAVSLLYENGE 115 Query: 148 FVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDFLALNDEMI 206 V AA RGDG +GE+++A +R I IP L NIP +E+RGEV+I + F LN+E Sbjct: 116 LVQAATRGDGTTGENITANVRTIHAIPLRLKGENIPARVEIRGEVFIKQTGFEKLNEEAR 175 Query: 207 AVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYEMLQKMRCL 264 G K +ANPRNAA+G LR+L+P R L F+ +G+G Y L + + Sbjct: 176 RTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGIGVQEGGALPASHYARLMQFKEW 235 Query: 265 GFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 G PV++ V+ ++ +Y +++ R TL +DIDG+V KVD LQ++LG A++PRW Sbjct: 236 GLPVSDKVKLCLGTQQVIDFYQDIEQQRPTLGFDIDGVVVKVDSLELQERLGFVAKAPRW 295 Query: 325 MISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDA 384 + KF ++ T + D++ Q+GRTG +TPVARLEPV++ G ++NATLHN D I+ L Sbjct: 296 ATAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVSVAGVTVSNATLHNADEIERL-- 353 Query: 385 SGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRD 444 +R+GD V+++RAG+VIP+VV +I R ++ FP CP+C S + R Sbjct: 354 ---------GLRIGDTVIIRRAGDVIPQVVGVIHERRPAESLEVIFPQHCPVCGSDIERV 404 Query: 445 LNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSI 504 A RCTGGL C AQ+ E L+HFVSR A +++G+G++ ++ E + Sbjct: 405 EGE------AVARCTGGLFCGAQRKEALRHFVSRRAMDVDGMGEKIIEQLVDKE----YV 454 Query: 505 RIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGA 564 + PAD+F L + T ++ G S N+ +++ K R + RFI+SLGIR VG Sbjct: 455 KTPADLFRLTAGKLTGLERM------GPKSAQNVINALEKARKTTFARFIYSLGIREVGE 508 Query: 565 EIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICA 624 A +L ++ + + D +LI V VG I+A +V F+ P N Sbjct: 509 TTAANLVSHFGTLEKLQAA----------DTEALIAVQDVGGIVASHVVNFFNEPHNQAV 558 Query: 625 VEALLKEVSPSIGRHEKN----VSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAI 680 ++ L+ + E + K +V TG+L ++ R +A++ + LGA V+ Sbjct: 559 IDDLVNNIGIHWESAESPNLGEIDGPFAGKTVVLTGSLNRLSRDEAKDKLAALGAKVTGS 618 Query: 681 LSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 +S+KTD++I G+ GSKL KA +LG+ +++E++ + LL++ Sbjct: 619 VSKKTDLVIAGEAAGSKLAKANELGIPVIDEDEMIRLLRE 658 >gi|240142614|ref|YP_002967127.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1] gi|240012561|gb|ACS43786.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1] Length = 712 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 307/716 (42%), Positives = 447/716 (62%), Gaps = 16/716 (2%) Query: 5 QLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPD 64 + +P+ LS E AR E ++L EI+ HD+ Y+ PI+ D+EYDAL+RR I A P Sbjct: 8 RAVPVAELSNEDARIEHAALASEIAEHDERYHGQDAPIVTDAEYDALRRRAAEIEAAHPA 67 Query: 65 LARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN 124 LA + K+G + + K+ H+IP LSLE + ED+ +F RI RF Sbjct: 68 LAAESEVA---KKVGAKPSSRFGKIVHAIPMLSLENAFVDEDVAEFAVRIRRFLDLPGGA 124 Query: 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEI 184 + FT EPKIDG ++IRYE + V+AA RGDG +GE+V+A I IP L + P++ Sbjct: 125 PLAFTAEPKIDGLSLSIRYENRRLVHAATRGDGAAGENVTANALTIQDIPDDLPRDAPDV 184 Query: 185 IEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGL 243 +E+RGEVY+SK+ F A+N A G+ +ANPRNAA+G LR+L+P +R L FF + Sbjct: 185 VEIRGEVYLSKSAFAAINARQEAAGKPLFANPRNAAAGSLRQLDPKITASRPLKFFAYSW 244 Query: 244 GKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLV 303 G+TS A+ Q+ L + GF VN + +T ++ Y + ++R+ L YDIDG+V Sbjct: 245 GETSAPIAEAQHAALARFDDWGFYVNPLTKLCSTVEEMLEVYRAIGAMRADLEYDIDGVV 304 Query: 304 YKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNI 363 YKVD+ +LQ++LG +R+PRW ++HKF +QA T L I+IQ+GRTG LTPVA+L P+ + Sbjct: 305 YKVDDLALQRRLGFVSRAPRWAVAHKFPAQQAETVLEAIEIQVGRTGSLTPVAKLRPLTV 364 Query: 364 GGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHP 423 GG +++NATLHNEDYIKGLD+ G+ +R GRD+RVGD V+V+RAG+VIP++VD+ ++R Sbjct: 365 GGVVVSNATLHNEDYIKGLDSDGQPIREGRDLRVGDHVIVQRAGDVIPQIVDVDPSKRSE 424 Query: 424 DAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNI 483 P+ FP CP+C S VR+ NPK+G+ + RCTGGL C AQ +ER+KHF SR A +I Sbjct: 425 GTAPYEFPKLCPVCGSHAVREANPKSGREDSVRRCTGGLICQAQAVERIKHFASRGAMDI 484 Query: 484 EGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSIN 543 EGLG ++++ F + + +R P+DIFTL+RRQ + G G SV NL+ +I+ Sbjct: 485 EGLGDERIEDFHRDD----LLRTPSDIFTLRRRQDAGEIDLTAREGMGPTSVANLFAAID 540 Query: 544 KRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR-VP 602 RR + LER I LGIRHVG A+ LAK Y S + A D ++ + Sbjct: 541 ARRKVPLERLIHGLGIRHVGETNAKLLAKAYRSLPAVREA-----AQVPDALKRMVDLIN 595 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G ++A A+VEF+ P N V+ LL EV + K S + K +VFTG+L ++ Sbjct: 596 GIGPVVAAAVVEFFLEPHNSEEVDRLLAEVGTTAPAAAK--ESPVTGKTIVFTGSLVRMS 653 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA + +S+KTD+++ G GSKL KA+Q GV++++E + L+ Sbjct: 654 RDEAEAMAEGLGARTAGTVSKKTDLVVAGPGAGSKLAKAEQFGVRVIDENGWFDLV 709 >gi|322513636|ref|ZP_08066733.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976] gi|322120561|gb|EFX92462.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976] Length = 681 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 258/720 (35%), Positives = 405/720 (56%), Gaps = 51/720 (7%) Query: 9 IEALSIEQARK-----ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFP 63 + LS QA+ +L +L Q++ ++ Y+ P++ D+EYD L + P Sbjct: 1 MPLLSQMQAQADTTFAQLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHP 60 Query: 64 DLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD 123 + + + P ++G + +VTH IP LSL+ ++ EDL F+ R+ + + Sbjct: 61 EWITA---DSPTQRVGAKPLDGFAQVTHEIPMLSLDNAFSDEDLDSFLRRMESYISENPL 117 Query: 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIP 182 S+ F EPK+DG ++I Y G AA RGDG +GED+++ IR I IP L+ N P Sbjct: 118 -SLAFCCEPKLDGLAVSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPP 176 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVH 241 +EVRGEV++ + F LN+ + K +ANPRNAA+G LR+L+P R L + Sbjct: 177 ARLEVRGEVFMPQKGFEELNERALEKSEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAY 236 Query: 242 GLG--KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDI 299 G+G ++ + +E LQ ++ +G PVNN +R ++++Y ++++ R TL YDI Sbjct: 237 GIGVYESDDELPATHFERLQWLKSIGIPVNNEIRLVTGHEQLLAFYADIQAKRPTLGYDI 296 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLE 359 DG V KV++ LQ+QLG +RSPRW I++KF ++ T L D++ Q+GRTG +TPVA+LE Sbjct: 297 DGTVLKVNDIGLQEQLGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLE 356 Query: 360 PVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVN 419 PV + G ++NATLHN D I+ L I +GD V+++RAG+VIP++V +++ Sbjct: 357 PVFVAGVTVSNATLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQIVGVVME 405 Query: 420 ERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRD 479 R +A+ FP+ CP+C+S VVR A RCTGGL C AQ+ E LKHFVSR Sbjct: 406 RRPENAEKIEFPTACPVCESAVVRVEGE------AVARCTGGLFCGAQRKEALKHFVSRK 459 Query: 480 AFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLY 539 A +I+G+G++ ++ E + PAD+F L ++ G S N Sbjct: 460 AMDIDGVGEKLIEQLMDRE----LVHTPADLFKLDHTTLMRLDRM------GKKSAQNAL 509 Query: 540 DSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLI 599 +SI K +N +L RF+F+LGIR VG A++LA ++ + + + L Sbjct: 510 NSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLEAIRMAT----------FEQLQ 559 Query: 600 RVPLVGDIIAQAIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTL 658 V VG+++A IV F+Q P N+ VE L+ + V + + ++ K +V TGTL Sbjct: 560 EVQDVGEVVANRIVRFWQEPHNVAVVEDLIAQGVYWQDVVQVEIADNPLKGKNVVLTGTL 619 Query: 659 QKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 ++ R +A+ + G VS +S KTD +I G+ GSKL KAQ+LGVK++ E++ + L+ Sbjct: 620 TQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQELVDLM 679 >gi|78066803|ref|YP_369572.1| DNA ligase (NAD+) [Burkholderia sp. 383] gi|123742568|sp|Q39F38|DNLJ_BURS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|77967548|gb|ABB08928.1| DNA ligase (NAD+) [Burkholderia sp. 383] Length = 691 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 260/731 (35%), Positives = 393/731 (53%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L R + Sbjct: 1 MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLET 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 57 DHPELV---TPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALDK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + E K DG I++RYE+G FV A+ RGDG +GEDV+ +R I +IP Sbjct: 114 TTDLAGSVTEPVEYACELKFDGLAISLRYEQGVFVQASTRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSLN-IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L +P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+ Sbjct: 174 LKLKGKHVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L LG PVN G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGMPMLDTHSALLDWYESLGLPVNREREVVQGAEGLLGFFRKIGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGALLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI+ LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 L+ V VG I+A+++ +F+ N +E L P K + Sbjct: 559 --SIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLVKAEELGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 677 LDEDGLHQLLE 687 >gi|115352108|ref|YP_773947.1| DNA ligase [Burkholderia ambifaria AMMD] gi|122322835|sp|Q0BE10|DNLJ_BURCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|115282096|gb|ABI87613.1| DNA ligase, NAD-dependent [Burkholderia ambifaria AMMD] Length = 691 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 260/731 (35%), Positives = 394/731 (53%), Gaps = 56/731 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + Q P + +A + L ++ + YY +P + D+EYD L + Sbjct: 1 MARTQAEPPASQPDARA----AWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLET 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 PDL P+ P ++GGE+ V H P LSL + ED+ F R+ K Sbjct: 57 DHPDLV---TPDSPTQRVGGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE G FV A+ RGDG +GEDV+ +R I +IP Sbjct: 114 TTDLAGSVTDPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L ++P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+P Sbjct: 174 LKLKGAHVPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L G PVN G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R +LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A TRL+ ID+Q+GRTG Sbjct: 294 RESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGALLDRRPDDAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ +L RFI+ LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDA-------- 558 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEIE 648 L+ V VG I+A++I +F+ N +E L + + + Sbjct: 559 --SIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAPRAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQ 719 ++E+ LL+ Sbjct: 677 LDEDGLHQLLE 687 >gi|260581847|ref|ZP_05849643.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127] gi|260095040|gb|EEW78932.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127] Length = 679 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 250/709 (35%), Positives = 400/709 (56%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 10 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 67 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGEV+ Sbjct: 126 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250 + F LN + K +ANPRNAA+G LR+L+P + R L +G+G + Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 245 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 246 PTTHYACLQWLKSIGIPVNPEIRLCNGADEVLDFYRDIQNKRSSLGYDIDGTVLKINDIA 305 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L+ I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 366 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 415 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T+ T+ + G S N +S+ K ++ +L Sbjct: 469 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGVKSAENALNSLEKAKSTTL 518 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + A D L +VP VG+++A Sbjct: 519 ARFIFALGIREVGEATALNLANHFKTLD----------ALKAADLDQLQQVPDVGEVVAN 568 Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + V ++ + ++K +V TGTL ++ R++A+ Sbjct: 569 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 629 LQQLGAKVSGSVSNKTDFVIAGDAAGSKLAKAQELNIAVLTEEEFLAQI 677 >gi|68057854|gb|AAX88107.1| DNA ligase [Haemophilus influenzae 86-028NP] Length = 679 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 249/709 (35%), Positives = 402/709 (56%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 10 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 67 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGEV+ Sbjct: 126 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250 + F LN + K +ANPRNAA+G LR+L+P + R L +G+G I Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGIDL 245 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 246 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 305 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L+ I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 366 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 415 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T+ T+ + G S N +S+ ++ +L Sbjct: 469 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 518 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +RFIF+LGIR VG A +LA ++ + A + + L +VP VG+++A Sbjct: 519 DRFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 568 Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + V ++ + ++K +V TGTL ++ R++A+ Sbjct: 569 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 629 LQQLGAKVSGSVSSKTDFVIAGDGAGSKLAKAQELNITVLTEEEFLAQI 677 >gi|229843861|ref|ZP_04464002.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1] gi|229812855|gb|EEP48543.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1] Length = 670 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 250/711 (35%), Positives = 400/711 (56%), Gaps = 45/711 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + ++++L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTKINNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIHHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I Y G AA RGDG GED++A IR I IP ++L+ N P +EVRGEV+ Sbjct: 117 LDGLAVSILYINGVLTQAATRGDGTIGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250 + F LN + K +ANPRNAA+G LR+L+P + R L +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L+ I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T+ T+ + G S N +S+ K ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGVKSAENALNSLEKAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + A D L +VP VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLD----------ALKEADLDQLQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + V ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLVKAQELNITVLTEEEFLAQITK 670 >gi|242238286|ref|YP_002986467.1| NAD-dependent DNA ligase LigA [Dickeya dadantii Ech703] gi|242130343|gb|ACS84645.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech703] Length = 684 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 256/728 (35%), Positives = 404/728 (55%), Gaps = 52/728 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +++ +P+ S A ++ +L ++ YH+ Y+ P I D+EYD L + Sbjct: 1 MSEKKPMPMNDTSA--AAVQIDALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKLLEQ 58 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 A P+ S + P ++G V H +P LSL+ +++ E + F+ RI + Sbjct: 59 AHPEWVTS---DSPTQRVGATPLAGFDNVQHEVPMLSLDNVFDAESFQAFVKRIGDRLKS 115 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179 D ++ F E K+DG +++ YE G V AA RGDG +GE++++ IR I IP L Sbjct: 116 --DEALRFCCELKLDGLAVSLLYEDGVLVRAATRGDGSTGENITSNIRTIGAIPLRLRGD 173 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 NIP +EVRGEV++ F ALN+E G K +ANPRNAA+G LR+L+P R L F Sbjct: 174 NIPRRLEVRGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTF 233 Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F +G+G ++ L + R G PV++ +R ++++Y ++++R TL + Sbjct: 234 FCYGVGLMEGGSLPDSHWQRLMQFREWGLPVSDRIRLCTGGDEVLAFYQHVEAVRDTLGF 293 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+V KVD+ +LQ++LG AR+PRW ++ KF ++ T L D++ Q+GRTG +TPVAR Sbjct: 294 DIDGVVIKVDDLALQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVAR 353 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV + G +++NATLHN D I L I++GDRV V+RAG+VIP++V ++ Sbjct: 354 LEPVAVAGVIVSNATLHNADEIDRL-----------GIQIGDRVAVRRAGDVIPQIVSVV 402 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 + +R DA+P FP+ CP+C S V R RCTGGL C+AQ+ E LKHFVS Sbjct: 403 LPDRPADARPVVFPTQCPVCGSDVERVDGE------VVTRCTGGLFCAAQRKEALKHFVS 456 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A ++EG+G + +D + E ++ PA++F L T ++ G S N Sbjct: 457 RRALDVEGMGDKIIDQLVEKE----YVKTPAELFRLDIGILTRLERM------GPKSAQN 506 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L ++++K ++ + RF+++LGIR VG A LA ++ + A D + Sbjct: 507 LVNALDKAKSTTFARFLYALGIRDVGEATAAGLAAHFGTLD----------ALMTADVDT 556 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKE-----VSPSIGRHEKNVSSEIENKKL 652 L +VP VG ++A + F N + L+ + + + K + Sbjct: 557 LQQVPDVGIVVATHVRHFLDEEHNQQIIRELIGPEVGLRWPDPVVVDAGALDNPFAGKTV 616 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG+L + R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ LG+ +++E Sbjct: 617 VLTGSLSLLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQALGIDVIDEV 676 Query: 713 QFLFLLQQ 720 + + LL Q Sbjct: 677 EMMRLLGQ 684 >gi|53719773|ref|YP_108759.1| DNA ligase [Burkholderia pseudomallei K96243] gi|167816389|ref|ZP_02448069.1| DNA ligase [Burkholderia pseudomallei 91] gi|81379503|sp|Q63T07|DNLJ_BURPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52210187|emb|CAH36166.1| DNA ligase [Burkholderia pseudomallei K96243] Length = 691 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 265/726 (36%), Positives = 394/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + + A+ + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE V H P LSL + ED+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IP +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G +L LG PVN G++++++ + R +LPYD Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNLGFSTLVGLDR------FAEKSARNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S + + Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL---------- 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E L P + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 TLLEGH 689 >gi|167570377|ref|ZP_02363251.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis C6786] Length = 691 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 262/726 (36%), Positives = 403/726 (55%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + + A+ + L E+ + YY +P + D+EYD L + PDL Sbjct: 5 PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P P ++GGE+ V H P LSL ++ ED+ F R+ K D Sbjct: 63 --TPESPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 + + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + ++P L Sbjct: 121 VTDPVEYACELKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVPLKLKGKH 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++ +++ + R +LPYD Sbjct: 241 AYGIGVLDGVDMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C SR+ R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTACPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS++K ++ +L RFI++LGIRHVG A+ LAK++ S +L Sbjct: 514 IDSLDKAKHTTLSRFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIEAL 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E A + P + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++EE Sbjct: 624 GTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEEGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 KLLEGH 689 >gi|325529285|gb|EGD06234.1| NAD-dependent DNA ligase [Burkholderia sp. TJI49] Length = 691 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 259/733 (35%), Positives = 394/733 (53%), Gaps = 56/733 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M + P + +A + L ++ + YY +P + D+EYD L + Sbjct: 1 MARTPAEPPASQPDARA----AWLRDQLQQANYAYYVLDQPDLPDAEYDRLFAELQQLEA 56 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+ P+ P ++GGE+ V H P LSL + +D+ F R+ K Sbjct: 57 DHPEFV---TPDSPTQRVGGEVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGK 113 Query: 121 KDD------NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 D + + + E K DG I++RYE+G FV A+ RGDG +GEDV+ +R I +IP Sbjct: 114 AVDLAGSVTDPVEYACELKFDGLAISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIP 173 Query: 175 RVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT 233 L ++P +++VRGEV + K DF LN+ A ++ +ANPRNAA+G LR+L+P Sbjct: 174 LKLKGADVPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITA 233 Query: 234 -RYLNFFVHGLGKTSEIF-AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSI 291 R L+FF +G+G + +L LG PVN + G++ ++ ++ Sbjct: 234 QRPLSFFAYGIGVLDGMPMPDTHSGLLDWYETLGLPVNRERAVVHGADGLLGFFRKVGEK 293 Query: 292 RSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGI 351 R LPYDIDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG Sbjct: 294 RDGLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGA 353 Query: 352 LTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIP 411 +TPVARLEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP Sbjct: 354 ITPVARLEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIP 402 Query: 412 KVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLER 471 +VV +++ R DA F P+ CP+C S++ R + A RCTGGL C AQ+ + Sbjct: 403 EVVGAVLDRRPADAAEFVMPTECPVCGSKIERLPDE------AIARCTGGLFCPAQRKQA 456 Query: 472 LKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFG 531 L HF R A +I+GLG++ +D + +R PAD+F L + + F Sbjct: 457 LWHFAQRRALDIDGLGEKIIDQLVELN----LVRTPADLFNL------GFATLAELDRFA 506 Query: 532 DVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHN 591 + S NL DS+ K ++ + RFI+ LGIRHVG A+ LAK++ S Sbjct: 507 EKSAQNLLDSLEKAKHTTRARFIYGLGIRHVGESTAKDLAKHFGSLDPIM---------- 556 Query: 592 NDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIE 648 N L+ V VG I+A++I +F+ N +E L P K + Sbjct: 557 NASIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLA 616 Query: 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKI 708 K +V TGTL + R A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ + Sbjct: 617 GKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPV 676 Query: 709 MNEEQFLFLLQQY 721 ++EE LL+ + Sbjct: 677 LDEEGLHQLLEGH 689 >gi|114047080|ref|YP_737630.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7] gi|113888522|gb|ABI42573.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7] Length = 690 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 249/716 (34%), Positives = 394/716 (55%), Gaps = 51/716 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +A++ + A+ + +L Q ++ H+ YY P I DSEYD L +R + +P + Sbjct: 18 QAVTPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA- 76 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++GG ++TH P LSL+ ++ D F R+ + F Sbjct: 77 --DSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDR-----VGEVSFC 129 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVR Sbjct: 130 CEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVR 189 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG Sbjct: 190 GEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVE 249 Query: 248 EI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 AK YE LQ+++ G PV++ ++ + + +YY ++ + R+ LP++IDG+V Sbjct: 250 PTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVM 309 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +G Sbjct: 310 KVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 369 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D I+ L + VGD V+++RAG+VIP++V I+ R D Sbjct: 370 GVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPED 418 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+ +FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+ Sbjct: 419 AKAIAFPQHCPVCGSLVERLEGE------AVTRCSGGLFCEAQRKEAIKHFASRKALDID 472 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + ++ E ++ PAD+F L T ++ G S TNL +I Sbjct: 473 GMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAQAIEA 522 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L RF+++LGIR VG A +LA ++ S + A LI+V + Sbjct: 523 AKTTTLPRFLYALGIREVGEATAANLATHFGSLE----------ALRVATIEQLIQVEDI 572 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 G+++AQ + F+ P N+ ++AL+ V+ ++ + V TGTL ++ R Sbjct: 573 GEVVAQHVAHFFAQPHNLEVIDALITAGVNWPTIAAPSADEQPLKGQTWVLTGTLNQLNR 632 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 633 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 688 >gi|167563194|ref|ZP_02356110.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis EO147] Length = 691 Score = 796 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 261/726 (35%), Positives = 402/726 (55%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + + A+ + L E+ + YY +P + D+EYD L + PDL Sbjct: 5 PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P P ++GGE+ V H P LSL ++ ED+ F R+ K D Sbjct: 63 --TPESPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 + + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + ++P L Sbjct: 121 VTDPVEYACELKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVPLKLKGKH 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++ +++ + R +LPYD Sbjct: 241 AYGIGVLDGVDMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q++LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C S + R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTACPECGSGIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS++K ++ +L RFI++LGIRHVG A+ LAK++ S +L Sbjct: 514 IDSLDKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SIEAL 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E A + P + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++EE Sbjct: 624 GTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEEGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 KLLEGH 689 >gi|53723744|ref|YP_103200.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344] gi|67639492|ref|ZP_00438344.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4] gi|121600643|ref|YP_993378.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1] gi|124385135|ref|YP_001029185.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10229] gi|126450807|ref|YP_001080885.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10247] gi|167004074|ref|ZP_02269848.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20] gi|254178005|ref|ZP_04884660.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399] gi|254206491|ref|ZP_04912843.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU] gi|254358100|ref|ZP_04974373.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280] gi|81604820|sp|Q62JB9|DNLJ_BURMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215563|sp|A3MKU9|DNLJ_BURM7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215564|sp|A2SB66|DNLJ_BURM9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|166215565|sp|A1V575|DNLJ_BURMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|52427167|gb|AAU47760.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344] gi|121229453|gb|ABM51971.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1] gi|124293155|gb|ABN02424.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10229] gi|126243677|gb|ABO06770.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10247] gi|147753934|gb|EDK60999.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU] gi|148027227|gb|EDK85248.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280] gi|160699044|gb|EDP89014.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399] gi|238520039|gb|EEP83503.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4] gi|243060513|gb|EES42699.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20] Length = 691 Score = 796 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 265/726 (36%), Positives = 394/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + + A+ + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE V H P LSL + ED+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IP +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G +L LG PVN G++++++ + R +LPYD Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLTAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNLGFSTLVALDR------FAEKSARNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S + + Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL---------- 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E L P + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 TLLEGH 689 >gi|126453906|ref|YP_001066758.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a] gi|134277579|ref|ZP_01764294.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305] gi|167739178|ref|ZP_02411952.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 14] gi|167824768|ref|ZP_02456239.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 9] gi|167846299|ref|ZP_02471807.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei B7210] gi|167894881|ref|ZP_02482283.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 7894] gi|167903270|ref|ZP_02490475.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei NCTC 13177] gi|167919520|ref|ZP_02506611.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei BCC215] gi|217421846|ref|ZP_03453350.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576] gi|226198948|ref|ZP_03794511.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9] gi|237812814|ref|YP_002897265.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346] gi|242317106|ref|ZP_04816122.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b] gi|254179316|ref|ZP_04885915.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655] gi|254198094|ref|ZP_04904516.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13] gi|166215566|sp|A3NWN7|DNLJ_BURP0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126227548|gb|ABN91088.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a] gi|134251229|gb|EBA51308.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305] gi|169654835|gb|EDS87528.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13] gi|184209856|gb|EDU06899.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655] gi|217395588|gb|EEC35606.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576] gi|225929048|gb|EEH25072.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9] gi|237506455|gb|ACQ98773.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346] gi|242140345|gb|EES26747.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b] Length = 691 Score = 796 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 265/726 (36%), Positives = 395/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + + A+ + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE V H P LSL + ED+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IP +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G +L LG PVN G++++++ + R +LPYD Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNLGFSTLVALDR------FAEKSARNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S + + Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL---------- 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E L P + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 TLLEGH 689 >gi|166216288|sp|Q0HWD2|DNLJ_SHESR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] Length = 688 Score = 796 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 249/716 (34%), Positives = 394/716 (55%), Gaps = 51/716 (7%) Query: 10 EALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSE 69 +A++ + A+ + +L Q ++ H+ YY P I DSEYD L +R + +P + Sbjct: 16 QAVTPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAA- 74 Query: 70 DPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFT 129 + P ++GG ++TH P LSL+ ++ D F R+ + F Sbjct: 75 --DSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDR-----VGEVSFC 127 Query: 130 LEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVR 188 EPK+DG ++I Y G AA RGDG GED++ ++ I +IP L N PE++EVR Sbjct: 128 CEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVR 187 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE ++ K F ALN+ K + NPRNAA+G LR+L+ +R L+F+ + LG Sbjct: 188 GEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVE 247 Query: 248 EI---FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 AK YE LQ+++ G PV++ ++ + + +YY ++ + R+ LP++IDG+V Sbjct: 248 PTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVM 307 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KV++ + Q+ LG A+SPRW I++KF ++ T L +D Q+GRTG +TPVARL+PV +G Sbjct: 308 KVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVG 367 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G ++NATLHN D I+ L + VGD V+++RAG+VIP++V I+ R D Sbjct: 368 GVTVSNATLHNADEIERL-----------GVMVGDTVIIRRAGDVIPQIVAIVPERRPED 416 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+ +FP CP+C S V R A RC+GGL C AQ+ E +KHF SR A +I+ Sbjct: 417 AKAIAFPQHCPVCGSLVERLEGE------AVTRCSGGLFCEAQRKEAIKHFASRKALDID 470 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINK 544 G+G + ++ E ++ PAD+F L T ++ G S TNL +I Sbjct: 471 GMGDKIVEQLIDKE----LVQSPADLFKLTASMMTMLDRM------GMKSATNLAQAIEA 520 Query: 545 RRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLV 604 + +L RF+++LGIR VG A +LA ++ S + A LI+V + Sbjct: 521 AKTTTLPRFLYALGIREVGEATAANLATHFGSLE----------ALRVATIEQLIQVEDI 570 Query: 605 GDIIAQAIVEFYQNPRNICAVEALLK-EVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQR 663 G+++AQ + F+ P N+ ++AL+ V+ ++ + V TGTL ++ R Sbjct: 571 GEVVAQHVAHFFAQPHNLEVIDALITAGVNWPTIAAPSADEQPLKGQTWVLTGTLNQLNR 630 Query: 664 HKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + A+ + LGA V+ +S+ TD ++ G+ GSKL KAQ+LGVK++ E++ L LL Sbjct: 631 NDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALLA 686 >gi|126441747|ref|YP_001059474.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 668] gi|166215567|sp|A3NAV3|DNLJ_BURP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|126221240|gb|ABN84746.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 668] Length = 691 Score = 796 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 264/726 (36%), Positives = 395/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + + A+ + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE V H P LSL + ED+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 LPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G +L LG PVN G++++++ + R +LPYD Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNLGFSTLVALDR------FAEKSARNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S + + Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL---------- 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E L P + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 TLLEGH 689 >gi|76810783|ref|YP_333980.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b] gi|167720173|ref|ZP_02403409.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei DM98] gi|167911510|ref|ZP_02498601.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 112] gi|254189298|ref|ZP_04895809.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237] gi|254259109|ref|ZP_04950163.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a] gi|254297202|ref|ZP_04964655.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e] gi|123771899|sp|Q3JR23|DNLJ_BURP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|76580236|gb|ABA49711.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b] gi|157807762|gb|EDO84932.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e] gi|157936977|gb|EDO92647.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237] gi|254217798|gb|EET07182.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a] Length = 691 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 265/726 (36%), Positives = 395/726 (54%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + + A+ + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE V H P LSL + ED+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN- 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR I IP L Sbjct: 121 VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 IP +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G +L LG PVN G++++++ + R +LPYD Sbjct: 241 AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DAQ F P+ CP C SR+ R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAQEFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNLGFSTLVALDR------FAEKSARNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S + + Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMHAPIDAL---------- 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E L P + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 TLLEGH 689 >gi|161761269|ref|YP_248767.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae 86-028NP] gi|166215835|sp|Q4QLJ0|DNLJ_HAEI8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|309973429|gb|ADO96630.1| NAD-dependent DNA ligase [Haemophilus influenzae R2846] Length = 670 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 249/709 (35%), Positives = 402/709 (56%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250 + F LN + K +ANPRNAA+G LR+L+P + R L +G+G I Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGIDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L+ I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T+ T+ + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 +RFIF+LGIR VG A +LA ++ + A + + L +VP VG+++A Sbjct: 510 DRFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + V ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDGAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|148828262|ref|YP_001293015.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG] gi|166215779|sp|A5UIM6|DNLJ_HAEIG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|148719504|gb|ABR00632.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG] Length = 670 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 248/709 (34%), Positives = 400/709 (56%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDTEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I Y G AA RGDG +GED++A IR I +P ++L+ N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGVLTQAATRGDGSTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250 + F LN + K +ANPRNAA+G LR+L+P + R L +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L+ I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T+ T+ + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + A + + L +VP VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + V ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|167837047|ref|ZP_02463930.1| DNA ligase, NAD-dependent [Burkholderia thailandensis MSMB43] Length = 691 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 262/726 (36%), Positives = 400/726 (55%), Gaps = 53/726 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E + + A+ + L E+ + YY +P + D+EYD L I PDL Sbjct: 5 PVEPPASQPAK-RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQQIEAEHPDLV- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDD---- 123 P+ P ++GGE+ V H P LSL ++ +D+ F R+ K D Sbjct: 63 --TPDSPTQRVGGEVAGGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKATDLAGT 120 Query: 124 --NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-N 180 + + E K DG I++RYE G+FV A+ RGDG +GEDV+ IR + +IP L + Sbjct: 121 VTEPVEYACELKFDGLAISLRYEGGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGRH 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFF 239 +P +++VRGEV + K DF LN+ A G++ +ANPRNAA+G LR+L+ +R L+FF Sbjct: 181 VPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF 240 Query: 240 VHGLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYD 298 +G+G + +L LG PVN G++ +++ + R +LPYD Sbjct: 241 AYGIGVLDGVEMPGTHSGLLDWYETLGLPVNRERAVVRGAAGLLGFFHSVGERRESLPYD 300 Query: 299 IDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARL 358 IDG+VYKV+ Q +LG +R+PR+ ++HKF ++A T+L+ ID+Q+GRTG +TPVARL Sbjct: 301 IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL 360 Query: 359 EPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIV 418 EPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV ++ Sbjct: 361 EPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAVL 409 Query: 419 NERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSR 478 + R DA+ F P+ CP C SR+ R + A RCTGGL C AQ+ + L HF R Sbjct: 410 DRRPADAREFVMPTECPECGSRIERLPDE------AIARCTGGLFCPAQRKQALWHFAQR 463 Query: 479 DAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNL 538 A +I+GLG++ +D + +R PAD+F L + + + F + S NL Sbjct: 464 RALDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFSTLVELDRFAEKSAQNL 513 Query: 539 YDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSL 598 DS+ K ++ +L RFI++LGIRHVG A+ LAK++ S L Sbjct: 514 IDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPVMDA----------SIDEL 563 Query: 599 IRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV---SPSIGRHEKNVSSEIENKKLVFT 655 + V VG I+A++I +F+ N +E L + P + + K +V T Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVVLT 623 Query: 656 GTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFL 715 GTL + R A+E + GA V+ +S+KTD ++ G + GSKL KA++LG+ +++E Sbjct: 624 GTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGIPVLDEAGMH 683 Query: 716 FLLQQY 721 LL+ + Sbjct: 684 KLLEGH 689 >gi|320540519|ref|ZP_08040169.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson] gi|320029450|gb|EFW11479.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson] Length = 685 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 240/714 (33%), Positives = 393/714 (55%), Gaps = 50/714 (7%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ ++++ L + +H+ Y+ P + D+EYD L + A P+L + + Sbjct: 1 MKSITEQINQLRASLRHHEYQYHVLDAPEVPDAEYDRLMCELRELESAHPELITA---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + + +V H + LSL+ +++ E F R+ + D + F E K Sbjct: 58 PTQRVGAALLAAFDQVRHELLMLSLDNVFDEESFLAFYKRVQERLKISD--PLTFCCELK 115 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVY 192 +DG +++ YE G+ V AA RGDG +GE++++ +R I IP L+ NIP +EVRGEV+ Sbjct: 116 LDGLAVSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGANIPRRLEVRGEVF 175 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSE-IF 250 + + F +N E K +ANPRNAA+G +R+L+P R L FF +G+G Sbjct: 176 MPQAGFEQMNTEARRKNGKIFANPRNAAAGSIRQLDPRITANRPLTFFCYGVGLLEGGEL 235 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 + +E L + R G PVN+G R ++++Y++++ R+ L +DIDG+V K+D+ Sbjct: 236 PRSHFERLMQFRAWGLPVNDGARCCTGSDEVLAFYHQVEQDRAQLGFDIDGVVVKIDDID 295 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG AR+PRW + KF ++ T + +I+ Q+GRTG +TPVARLEPV + G ++N Sbjct: 296 LQEKLGFVARAPRWATAFKFPAQEQITLVREIEFQVGRTGAITPVARLEPVLVAGVTVSN 355 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L +R+GD V+V+RAG+VIPKVV ++ + R D + F Sbjct: 356 ATLHNADEIERL-----------GLRIGDTVIVRRAGDVIPKVVGVLEDRRPQDTRAVVF 404 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P CP+C S V R A RCTGGL C+AQ+ E LKHFVSR A +++G+G + Sbjct: 405 PQHCPVCGSDVERLEGE------AVARCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKI 458 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ + E ++ PAD+F L + ++ G S NL +++ K R + Sbjct: 459 IEQLVEKE----YVKNPADLFRLSANMLSGLDRM------GPKSAQNLVNALEKSRQTTF 508 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RF+++LGIR VG A +LA ++ S + D +L VP VG+++AQ Sbjct: 509 ARFLYALGIREVGEATAANLAAHFGSLEKLYAA----------DIAALKEVPDVGEVVAQ 558 Query: 611 AIVEFYQNPRNICAVE-----ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 F N + + + + + S K +V TG+L ++ R Sbjct: 559 HTRHFLDEALNQKVIAELVSVEIGINWPVPVVVATEEIDSPFAGKTVVLTGSLSQLSRDD 618 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 A++ + LGA +S +S+KTD++I G+ GSKL KAQ+LG+++++E + L L++ Sbjct: 619 AKDRLKVLGAKISGSVSKKTDLVIAGEAAGSKLVKAQELGIEVIDEAELLRLIE 672 >gi|271501855|ref|YP_003334881.1| DNA ligase [Dickeya dadantii Ech586] gi|270345410|gb|ACZ78175.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech586] Length = 683 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 257/726 (35%), Positives = 405/726 (55%), Gaps = 52/726 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 M +++ + I ++ +L ++ YH+ Y+ P I D+EYD L + Sbjct: 1 MLEKESKTADD--IAAVAAQVEALRAQLRYHEYKYHVEDAPEIPDAEYDTLMNTLKVLEQ 58 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 A P+L P+ P ++G + V H +P LSL+ +++ F RI + Sbjct: 59 AHPELV---TPDSPTQRVGAAPLDAFDTVAHDVPMLSLDNVFDEASFLAFCKRINDRLK- 114 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179 +D + F E K+DG +++ YE+G V AA RGDG +GE+++A IR I IP L Sbjct: 115 -NDAELTFCCELKLDGLAVSLLYEQGVLVRAATRGDGTTGENITANIRTIGAIPLRLHGD 173 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 NIP +EVRGEV++ F ALN+E G K +ANPRNAA+G LR+L+P TR L F Sbjct: 174 NIPTRLEVRGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTF 233 Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 +G+G ++ L + R G PV++ +R ++++Y +++ R TL + Sbjct: 234 LCYGVGLVEGGTLPDTHWQRLMQFRDWGLPVSDRIRLCTGSEAVLNFYRQVEQERETLGF 293 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+V KV+E +LQ++LG AR+PRW ++ KF ++ T L D++ Q+GRTG +TPVAR Sbjct: 294 DIDGVVIKVNELALQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVAR 353 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV + G +++NATLHN D I+ L I++GDRV V+RAG+VIP++V ++ Sbjct: 354 LEPVAVAGVVVSNATLHNADEIERL-----------GIQIGDRVAVRRAGDVIPQIVSVV 402 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ++ER DA+P FP CP+C S + R A RCTGGL C+AQ+ E LKHFVS Sbjct: 403 LSERPSDARPIVFPEHCPVCGSELERVEGE------AVTRCTGGLFCAAQRKEALKHFVS 456 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A ++EG+G + +D + E ++ PAD+ L T ++ G S N Sbjct: 457 RRALDVEGMGDKIIDQLVEKE----YVKTPADLLRLDIGILTRLDRM------GPKSAQN 506 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +++K ++ + RF+++LGIR VG A +LA ++ + A D + Sbjct: 507 LVSALDKAKSTTFARFLYALGIRDVGEATAANLASHFGTLD----------ALQAADLEA 556 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALL-----KEVSPSIGRHEKNVSSEIENKKL 652 L +VP VG ++A + F N ++AL+ + + +S K + Sbjct: 557 LQQVPDVGIVVATHVRHFLDEAHNQQVIQALISDEVGIHWPDPVRVDVEASTSPFAGKTV 616 Query: 653 VFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEE 712 V TG+L ++ R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E Sbjct: 617 VLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEA 676 Query: 713 QFLFLL 718 + + LL Sbjct: 677 EMMRLL 682 >gi|260580185|ref|ZP_05848015.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW] gi|1574651|gb|AAC22753.1| DNA ligase (lig) [Haemophilus influenzae Rd KW20] gi|260093469|gb|EEW77402.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW] Length = 679 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 248/709 (34%), Positives = 400/709 (56%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 10 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 66 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 67 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 125 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGEV+ Sbjct: 126 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 185 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250 + F LN + K +ANPRNAA+G LR+L+P + R L +G+G + Sbjct: 186 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 245 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 246 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 305 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 306 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 365 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L+ I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 366 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 414 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 415 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 468 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T+ T+ + G S N +S+ ++ +L Sbjct: 469 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 518 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + A + + L +VP VG+++A Sbjct: 519 ARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 568 Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + V ++ + ++K +V TGTL ++ R++A+ Sbjct: 569 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 628 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 629 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 677 >gi|83858905|ref|ZP_00952427.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633] gi|83853728|gb|EAP91580.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633] Length = 695 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 300/716 (41%), Positives = 449/716 (62%), Gaps = 30/716 (4%) Query: 6 LIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDL 65 L + AL+ ++A EL L +EIS HD YY+ P I D+ YDAL+ R AI FP+L Sbjct: 5 LKDVNALTSDEAASELERLAREISRHDKAYYEKDAPKISDAAYDALRARNSAIEARFPEL 64 Query: 66 ARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS 125 R + P +++G + + +V H++P LSL + +D+R F RI RF K D Sbjct: 65 KRK---DSPSDRVGAKPSEQFGEVVHAVPMLSLGNAFEDQDVRDFADRIRRFLNLK-DEK 120 Query: 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEII 185 + FT EPKIDG +RYE+G+ V A RGDG +GE+V+A ++ I IP L ++P+++ Sbjct: 121 LVFTAEPKIDGLSANLRYEQGELVIGATRGDGRTGENVTANLKTIADIPHRLEGDVPDVL 180 Query: 186 EVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLG 244 EVRGEVY+S DF LN G+ Y NPRNAA+G LR+++P R L FF + G Sbjct: 181 EVRGEVYMSHADFAQLNAMQEERGKPAYKNPRNAAAGSLRQIDPNVTAERPLRFFAYAWG 240 Query: 245 KTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVY 304 + SE A+ QY+ ++++ LGF +N+ + + + ++++Y +++ R+ L YDIDG+VY Sbjct: 241 ELSEPLAETQYDAVKRLGQLGFVINDDMVRVESVEDVLAHYRALEAKRADLGYDIDGVVY 300 Query: 305 KVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIG 364 KVD Q++LG AR+PRW I+HKF+ ++A TRL I+IQ+GRTG LTPVA+LEPV +G Sbjct: 301 KVDRLDWQERLGFVARAPRWAIAHKFSPEKAVTRLNAIEIQVGRTGALTPVAKLEPVTVG 360 Query: 365 GALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPD 424 G +++NATLHN+D I+ +D+RVGD V+++RAG+VIP+VV++++++R Sbjct: 361 GVVVSNATLHNQDEIER-----------KDVRVGDTVIIQRAGDVIPQVVEVVLDKRPEA 409 Query: 425 AQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIE 484 A+PF+FP+ CP+C S VR+ RCTGGL C AQ +ERLKHFVSR AF+IE Sbjct: 410 AEPFAFPTLCPVCGSHAVREEGE------VVRRCTGGLICDAQAVERLKHFVSRKAFDIE 463 Query: 485 GLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKI--ENILGFGDVSVTNLYDSI 542 GLG +Q++ FF ++ PADIFTL+ R + + G+G+ S NL+ SI Sbjct: 464 GLGAKQIEAFFHE----GLVKQPADIFTLRARNEAGEINPPIQTREGWGERSAANLFGSI 519 Query: 543 NKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVP 602 ++RRNI L RF+F+LGIRHVG E AR +A+ + S+Q +E + + + + + Sbjct: 520 DQRRNIGLARFLFALGIRHVGEETARLIARSFTSWQ-VVRETAEAANEPGEAFAAFMDID 578 Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 +G+ +A+ EF+ N A+ ALL V+ + S + K +VFTG+L++ Sbjct: 579 GIGETAVKALAEFFAESHNQDALNALLAHVTVE-DAEQVAAESPVAGKTVVFTGSLERFT 637 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 R +A+ LGA VS +S KTDI++ G GSKL+KAQ+LGV+ M E+++L L+ Sbjct: 638 RDEAKAKAQSLGAKVSGSVSGKTDILVAGPGAGSKLKKAQELGVQTMTEDEWLALI 693 >gi|323499974|ref|ZP_08104932.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326] gi|323314991|gb|EGA68044.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326] Length = 669 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 255/712 (35%), Positives = 395/712 (55%), Gaps = 48/712 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 +S E +++L+ L + + YH YY P I D+EYD L R + PDL Sbjct: 1 MSKE-IQEKLNQLRETLHYHGVKYYVEDSPEIPDAEYDRLMRELMELESQHPDLM---SL 56 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG V H IP LSL+ ++ +L F R+ + F E Sbjct: 57 DSPSQRVGGAALDGFGSVNHEIPMLSLDNAFDDAELESFNKRMADRIPSAKFD--VFCCE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGE 190 PK+DG +++ YE G V AA RGDG +GE+++ +R I IP L PE IEVRGE Sbjct: 115 PKLDGLAVSLLYENGVLVQAATRGDGTTGENITENVRTIKAIPLKLQGQGWPERIEVRGE 174 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE- 248 V++ K F LN++ + G K + NPRNAA+G LR+L+ TR L+F+ + +G Sbjct: 175 VFMPKAGFDKLNEQALKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVQGA 234 Query: 249 IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDE 308 + YE +++ G P+ ++ + + +YY ++ R LPY+IDG+V KVD+ Sbjct: 235 TLSSSHYERFLQLKGWGLPMCPETKRVSGLDEVKAYYQDILQRREALPYEIDGVVIKVDD 294 Query: 309 FSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALI 368 +LQ+QLG AR+PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV +GG + Sbjct: 295 IALQEQLGFVARAPRWAIAYKFPAQEELTTLNDVEFQVGRTGAITPVAKLEPVFVGGVTV 354 Query: 369 TNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPF 428 +NATLHN D I+ L + +GD V+++RAG+VIP++V ++V+ R A+ Sbjct: 355 SNATLHNADEIERLS-----------VMIGDTVVIRRAGDVIPQIVSVVVDRRPDSAREI 403 Query: 429 SFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGK 488 FP+ CP+CQS+V R A RC+GGL C AQ+ E LKHFVSR A +++GLG+ Sbjct: 404 VFPALCPVCQSQVERIEGE------AVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGE 457 Query: 489 QQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 + ++ E + PAD+F L T ++ G S N+ D++N+ + Sbjct: 458 KVIEQLVDREM----VETPADLFKLSAGVITVLDRM------GPKSAQNVVDALNQSKQT 507 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 +L RF++SLGIR VG A +LA+++ S Q + + + I V +G+I+ Sbjct: 508 TLPRFLYSLGIREVGEATAANLAQHFKSLQAVTKATHEEL----------IAVSDIGEIV 557 Query: 609 AQAIVEFYQNPRNICAVEALLKEV--SPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKA 666 A I F+ N + LL++ P I +++ + K +V TG+L ++ R A Sbjct: 558 ASHITAFFAQESNQQVIGQLLEQGINWPEIEERDESTPQPLAGKTVVLTGSLSQLSRSDA 617 Query: 667 QEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + + LGA V+ +S+KTDI+ G+N GSKL KAQ LGV+I E+ + L+ Sbjct: 618 KAALQDLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGVEIRTEQDLIDLI 669 >gi|296132371|ref|YP_003639618.1| DNA ligase, NAD-dependent [Thermincola sp. JR] gi|296030949|gb|ADG81717.1| DNA ligase, NAD-dependent [Thermincola potens JR] Length = 665 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 239/710 (33%), Positives = 377/710 (53%), Gaps = 47/710 (6%) Query: 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDP 71 + A K ++ L ++I H+ YY +P I D+EYD L R + +PDL P Sbjct: 1 MDKAAAAKRINELRKQIEEHNYYYYVLDRPRITDAEYDRLMRELTELEQQYPDLV---TP 57 Query: 72 NGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLE 131 + P ++GG V H P LSL ++ DL F R+ + + +E Sbjct: 58 DSPTQRVGGAPAQGFQSVRHLAPMLSLSNAFSAADLLDFDKRVRNGL---AGARVEYVVE 114 Query: 132 PKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEV 191 KIDG +++ YE G+FV A RGDG GED++ ++ I +IP L ++ E++EVRGE Sbjct: 115 LKIDGLAVSLLYENGRFVRGATRGDGEVGEDITQNLKTIKSIPLRLRQDL-ELLEVRGEA 173 Query: 192 YISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF 250 Y+ K +F +N+ G +ANPRNAA+G LR+L+P R L+ F++ LG Sbjct: 174 YMPKKEFARVNEAREEAGEPLFANPRNAAAGSLRQLDPAVTAERSLDIFLYALGAVQGQA 233 Query: 251 A-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 K E L ++ LGF +N + + ++ Y R LPY+IDG+V KV+ Sbjct: 234 PVKTHLEGLHLLKDLGFRINPNIVLLPNINEVIDYCQNWTEKRHDLPYEIDGMVIKVNSL 293 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 + Q LG ++SPRW I++KF +QA T++ I +++GRTG+LTP A LEPV + G+ I+ Sbjct: 294 AQQAALGFTSKSPRWAIAYKFPAEQAVTKVKRIYVRVGRTGVLTPTAELEPVRVAGSTIS 353 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 +ATLHNED I+ +DIR+GD V++ +AG+VIP++++++ +R Q F Sbjct: 354 SATLHNEDIIR-----------EKDIRIGDTVIIHKAGDVIPEIIEVVKEKRTGQEQEFF 402 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 P+ CP+C V + A RC C + E L HFVSRDA +IEGLG Sbjct: 403 MPAECPVCHGPVRKPAGE------VAVRCVNK-DCPGRGREGLIHFVSRDAMDIEGLGPA 455 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNIS 549 +D A ++ AD++ L ++ G SV NL ++I + + Sbjct: 456 VIDQLL----TAGLVKDAADLYYLNAEDLIKLERM------GKKSVENLLNAIERSKQKD 505 Query: 550 LERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIA 609 L IF+LGIRHVGA + LA ++ S + + +P +G +A Sbjct: 506 LASLIFALGIRHVGARAGKILAAHFGSMDRLKEARQEELTA----------IPEIGPKMA 555 Query: 610 QAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 ++IV ++++P ++ +E L + +E K V TG L+K R +AQE Sbjct: 556 ESIVAYFRDPAHLRLIERLRGAGVKMTQDIPERGERPLEGKTFVLTGALEKYSRKEAQEL 615 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 + +LG VS+ +S+KTD ++ G +PGSKLEKA+QLG+ +++E+ F +++ Sbjct: 616 IEKLGGKVSSSVSKKTDYVLAGADPGSKLEKARQLGITVISEDDFERMIK 665 >gi|220935192|ref|YP_002514091.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7] gi|254781444|sp|B8GTL0|DNLJ_THISH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|219996502|gb|ACL73104.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7] Length = 675 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 256/713 (35%), Positives = 385/713 (53%), Gaps = 48/713 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 E+ RK ++SL E+ YH+ YY P I D+ YDAL R + +P+L P+ Sbjct: 5 PEKVRKRVASLRDELDYHNHRYYVLDDPEIPDAAYDALMRELQDLEAKYPELV---TPDS 61 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++GG + + H +P LSL+ + D+ F RI +++ I F +EPK Sbjct: 62 PTQRVGGAPLKAFEEARHLLPMLSLDNAFEEADVLAFEKRIRDRLG--EESEIEFAVEPK 119 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVY 192 +DG I++ YE G V A RGDG +GEDV+A +R I IP L P+++EVRGEVY Sbjct: 120 LDGLAISLLYEDGHLVRGATRGDGATGEDVTANVRTIRAIPLRLQGRGWPKLLEVRGEVY 179 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IF 250 + + F A N E + G K + NPRNAA+G LR+L+ R L FF +G G Sbjct: 180 MDRAGFEAFNREAASRGEKVFVNPRNAAAGSLRQLDSRITAKRPLTFFAYGAGHVEGGEL 239 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 +L + G V G + YY + R LPYDIDG+VYKV+ F Sbjct: 240 PDTHAAVLDALAEWGQRVCPERDVVTGAAGCLEYYRRIGERRDGLPYDIDGVVYKVNRFE 299 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ++LG +R+PRW I+HK+ ++ T L D++ Q+GRTG LTPVARLEPV +GG ++N Sbjct: 300 LQQRLGFVSRAPRWAIAHKYPAQEQMTLLRDVEFQVGRTGALTPVARLEPVFVGGVTVSN 359 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D ++ +D+R+GD V+V+RAG+VIP+V ++++ R +A+ Sbjct: 360 ATLHNMDEVER-----------KDVRIGDTVIVRRAGDVIPEVAAVVLSRRPHNARHVVM 408 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S +VR A RC+GGL C+AQ+ E +KHF SR A +IEGLG + Sbjct: 409 PTHCPVCGSEIVRSEGE------AVARCSGGLYCAAQRREAIKHFASRRAMDIEGLGDKL 462 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ A + ++ L Q ++ G+ S NL D++ K ++ L Sbjct: 463 VEQLVD----AGLVDHVDGLYRLTAEQLAGLERM------GEKSAHNLVDALEKSKHTQL 512 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG AR+LA ++ D +L++VP VG ++A Sbjct: 513 ARFIFALGIREVGEATARALAIHFGGLDALMAA----------DEEALMQVPDVGPVVAH 562 Query: 611 AIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSS---EIENKKLVFTGTLQKIQRHKAQ 667 + F+Q P N ++AL + + + + V TG L+ + R +A Sbjct: 563 HVATFFQQPHNREVIDALREAGVHWEESEPAALQAEDLPLSGNTYVLTGALESMTREEAG 622 Query: 668 EYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 + + LGA VS +S+KT +I G+ GSKL KA++LGV +++E +FL L+ + Sbjct: 623 DRLMALGAKVSGSVSKKTTAVIAGEAAGSKLAKAEKLGVPVLSEAEFLELIGE 675 >gi|313201136|ref|YP_004039794.1| DNA ligase, nad-dependent [Methylovorus sp. MP688] gi|312440452|gb|ADQ84558.1| DNA ligase, NAD-dependent [Methylovorus sp. MP688] Length = 689 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 263/719 (36%), Positives = 385/719 (53%), Gaps = 54/719 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L ++I+ ++ YY P + DSEYD L R A+ HA P+L P+ P ++G Sbjct: 17 QIRQLREQINLYNYQYYVLDDPSVPDSEYDKLFRELQALEHAHPELL---TPDSPTQRVG 73 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + V H LSL + +L F RI + + +EPK DG I Sbjct: 74 ASPLKAFASVQHRQAMLSLNNAFEESELTAFDKRIRDALG---IAQVEYAVEPKFDGLAI 130 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDF 198 T+ YE G FV A RGDG++GEDVS+ +R I IP L N P +IEVRGEV + K DF Sbjct: 131 TLTYENGLFVQGATRGDGYTGEDVSSNLRTIRAIPMRLPVENPPALIEVRGEVLMLKRDF 190 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQYE 256 LN + G K +ANPRNAA+G LR+L+P TR L FF +GLG + Sbjct: 191 DKLNRQQAERGEKLFANPRNAAAGSLRQLDPAITATRPLMFFAYGLGIAEGVPQLSTHAA 250 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + + L PV++ G++ YY + + R LP+DIDG+VYKV+ + Q +LG Sbjct: 251 AMDYLASLRLPVSDQRDTVQGLAGLLDYYARIGAARPNLPFDIDGVVYKVNSIAQQNELG 310 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW ++HKF ++A T + ID+Q+GRTG +TPVARL+PV +GG +TNATLHN+ Sbjct: 311 FVSRAPRWAVAHKFPAQEALTEIQAIDVQVGRTGAITPVARLKPVFVGGVTVTNATLHNQ 370 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS----FPS 432 D I +D+RVGD V V+RAG+VIP+VV +++ +R D + Sbjct: 371 DEIDR-----------KDVRVGDTVSVRRAGDVIPEVVAVVLEKRPADTVAYRLLEAINH 419 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S V+R + A RCTGGL CSAQ+ + + HF SR A +IEGLG++ +D Sbjct: 420 QCPVCGSHVIRQEDE------AVARCTGGLFCSAQRKQAVLHFASRRAIDIEGLGEKLVD 473 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 I ADI+ L +S ++ + S N+ D++ + +L R Sbjct: 474 QLVD----GAHIHTLADIYRLDLATLSSLDRMA------EKSAQNILDALQASKATTLAR 523 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI++LGIR+VG A+ LA+Y+ S Q D L +VP VG I+A++I Sbjct: 524 FIYALGIRNVGEATAKDLARYFGSLQALLAA----------DIEQLQQVPDVGPIVAESI 573 Query: 613 VEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +F P N ++ L + + + K LV TGTL + R +A+ + Sbjct: 574 RQFLSEPHNQQVIQDLQDVGLHWTESDGAGTQQGVLTGKTLVLTGTLPTMSRDQAKALIE 633 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730 G V+ +S+KTD ++ G+ GSKL KAQ+LGV +++E L LL+ + HDD Sbjct: 634 AAGGKVAGSVSKKTDFVVAGEEAGSKLTKAQELGVAVIDENGLLALLEDKQAS---HDD 689 >gi|145630192|ref|ZP_01785974.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] gi|144984473|gb|EDJ91896.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021] Length = 670 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 247/709 (34%), Positives = 400/709 (56%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250 + F LN + K +ANPRNAA+G LR+L+P + R L +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y+ LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L+ I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T+ T+ + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + + L +VP VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLDTLKDA----------NLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+++ V ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIEQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|261496584|ref|ZP_05992964.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307787|gb|EEY09110.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. OVINE] Length = 685 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 263/707 (37%), Positives = 404/707 (57%), Gaps = 46/707 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + +++ ++ Q + ++ Y+ P + D+EYD L + P+L + P Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELI---SADSPT 73 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + +VTH IP LSL+ ++ EDL F+ R+ + + F EPK+D Sbjct: 74 QRVGAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQ-LEFCCEPKLD 132 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194 G ++I YE G AA RGDG +GE+++A IR I IP L + N P +EVRGEV++ Sbjct: 133 GLAVSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMP 192 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFA 251 ++ F LN++ +A G K +ANPRNAA+G LR+L+P R L +G+G ++ + Sbjct: 193 QSGFNELNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELP 252 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +E LQ ++ LG PVNN +R +++YY E+++ R TL YDIDG V KV++ +L Sbjct: 253 ATHFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIAL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG +RS RW I++KF ++ T L ++D Q+GRTG +TPVA+LEPV + G ++NA Sbjct: 313 QEQLGFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNA 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L I +GD V+++RAG+VIP++ +++ R +A+ FP Sbjct: 373 TLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVVLERRPENAKKIEFP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CPIC S V R A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ + Sbjct: 422 TACPICHSAVTRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLI 475 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + E I PAD+F L ++ G+ S N +SI K +N +L Sbjct: 476 EQLMARE----LIETPADLFKLDHTTLMRLERM------GEKSAQNALNSIEKAKNTTLP 525 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+FSLGIR VG A +LA ++ S + Q + L V VG+++A Sbjct: 526 RFLFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANR 575 Query: 612 IVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 IV F+Q P N+ VE L+ + V + V + +++K +V TGTL ++ R +A+ + Sbjct: 576 IVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKALL 635 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LG VS +S KTD +I G+ GSKL KAQ+LG++I++E+QF+ L Sbjct: 636 QSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL 682 >gi|319776649|ref|YP_004139137.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047] gi|329124164|ref|ZP_08252711.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116] gi|317451240|emb|CBY87473.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047] gi|327467589|gb|EGF13087.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116] Length = 670 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 248/709 (34%), Positives = 401/709 (56%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 ++ + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MKNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250 + F LN + K +ANPRNAA+G LR+L+P + R L +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGTITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L+ I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T+ T+ + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + A + + L +VP VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + V ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|261868202|ref|YP_003256124.1| NAD-dependent DNA ligase LigA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413534|gb|ACX82905.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans D11S-1] Length = 670 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 257/707 (36%), Positives = 403/707 (57%), Gaps = 46/707 (6%) Query: 17 ARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLN 76 ++++ L + + +H+ Y+ P I DSEYD L + A+ P+L + + P Sbjct: 5 IQQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTA---DSPTQ 61 Query: 77 KIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDG 136 ++G ++ H IP LSL+ ++ E+ F+ RI + F EPK+DG Sbjct: 62 RVGARPLSEFAQIRHEIPMLSLDNAFSNEEFFSFVKRIQDRLALVP-EPLTFCCEPKLDG 120 Query: 137 TMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVYISK 195 ++I Y G AA RGDG +GED++ IR I IP ++L+ N P +EVRGEV++ Sbjct: 121 LAVSILYVNGVLSQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPH 180 Query: 196 NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-FAKG 253 F LN+ + G K +ANPRNAA+G LR+L+P + R L + +G + Sbjct: 181 AGFERLNERALEHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVELPPT 240 Query: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQK 313 +E LQ ++ +G PVNN ++ + ++++Y + + RS+L YDIDG V K+++ +LQ+ Sbjct: 241 HFERLQWLKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQQ 300 Query: 314 QLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATL 373 +LG +++PRW I++KF ++ TRLLD++ QIGRTG +TPVA+LEPV++GG ++NATL Sbjct: 301 RLGFISKAPRWAIAYKFPAEEVRTRLLDVEFQIGRTGAVTPVAKLEPVSVGGVTVSNATL 360 Query: 374 HNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSF 433 HN D IK L I +GD VL++RAG+VIP+V+ ++ + + +P FP+ Sbjct: 361 HNNDEIKRL-----------GISIGDIVLIRRAGDVIPQVIKLVHKAKKGN-KPIVFPTH 408 Query: 434 CPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDF 493 CP+C S ++R A RCTGGL C+AQ+ E LKHFVSR A +I+ +G + ++ Sbjct: 409 CPVCDSLIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDSVGGKLIEQ 462 Query: 494 FFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERF 553 E I PAD+F L T+ T+ + G S N S+ K +N +L RF Sbjct: 463 LVDRE----LIHTPADLFKLD---LTTLTR---LERMGPKSAENALASLEKAKNTTLARF 512 Query: 554 IFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIV 613 IF+LGIR VG A +LA ++ + + A N D L +VP VG+++A I Sbjct: 513 IFALGIRDVGEATALNLANHFKTLE----------ALQNADLEQLQQVPDVGEVVANRIF 562 Query: 614 EFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F++ N+ VE L+ + V ++ + + K +V TGTL ++ R+ A+ + Q Sbjct: 563 VFWREAHNVAVVEDLIAQGVHWETVDVQEVKENPFKGKTVVLTGTLSQMGRNDAKALLQQ 622 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 LGA VS +S KTD +I G+ GSKL KA +LGV++++EE+FL + Sbjct: 623 LGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFLGWIN 669 >gi|330817444|ref|YP_004361149.1| DNA ligase [Burkholderia gladioli BSR3] gi|327369837|gb|AEA61193.1| DNA ligase [Burkholderia gladioli BSR3] Length = 691 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 263/723 (36%), Positives = 392/723 (54%), Gaps = 52/723 (7%) Query: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67 P+E Q + + L E+ + YY +P + D+EYD L R I PDL Sbjct: 5 PVEP-PASQPSERAAWLRNELERANHAYYVLDQPDLPDAEYDRLFRELQQIEAEHPDLI- 62 Query: 68 SEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDN--- 124 P+ P ++GGE V H P LSL ++ ED+ F R+ K + Sbjct: 63 --TPDSPTQRVGGEAATGFTPVVHDAPMLSLNNGFSDEDIAAFDKRVADALDKAPADLAG 120 Query: 125 ----SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL- 179 + + E K DG I++RYE G+FV AA RGDG +GEDV+ +R I +IP L Sbjct: 121 TAIDPVEYACELKFDGLAISLRYEHGRFVQAATRGDGTTGEDVTENVRTIRSIPLTLKGK 180 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNF 238 N P +++VRGEV + K DF LN ++ +ANPRNAA+G LR+L+ R L+F Sbjct: 181 NPPALLDVRGEVLMYKRDFARLNQRQREAEQREFANPRNAAAGSLRQLDSKITAQRPLSF 240 Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F +G+G +L G PVN G++++++++ R LPY Sbjct: 241 FAYGIGVLEGATMPDTHSGLLDWYAGFGLPVNRERAVVKGAEGLLAFFHKVGEQREALPY 300 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+VYKV+ Q++LG +R+PR+ ++HKF ++A TRLL I++Q+GRTG +TPVAR Sbjct: 301 DIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTRLLAIEVQVGRTGAITPVAR 360 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV + Sbjct: 361 LEPVFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSAL 409 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 ++ R DA F P+ CP+C SR+ R A RCTGGL C AQ+ + L HF Sbjct: 410 LDRRPADAAEFVMPTECPVCGSRIERLPEE------AIARCTGGLFCPAQRKQALWHFAQ 463 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A +I+GLG++ +D + +R PAD+F L + + F D S N Sbjct: 464 RRALDIDGLGEKIIDQLVEQN----LVRTPADLFHLGFATLAALDR------FADKSAQN 513 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L DS+ K R+ +L RFI++LGIRHVG A+ LAK++ S Q Sbjct: 514 LLDSLEKARHTTLGRFIYALGIRHVGESTAKDLAKHFGSLQPIMDATTE----------Q 563 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEV-SPSIGRHEKNVSSEIENKKLVFTG 656 L+ V VG ++A+++ +F+ N + L ++V P + + K +V TG Sbjct: 564 LLEVNDVGPVVAESLHQFFAEEHNRTVIAQLREKVDWPEGPPAPREPQGVLAGKTVVLTG 623 Query: 657 TLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLF 716 TL + R +A+ + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ Sbjct: 624 TLPTLGRDEAKALLEAAGAKVTGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMHL 683 Query: 717 LLQ 719 LL+ Sbjct: 684 LLK 686 >gi|227114832|ref|ZP_03828488.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 684 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 259/727 (35%), Positives = 404/727 (55%), Gaps = 54/727 (7%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MK + P E + A ++ L + + +H+ Y+ P I D EYD L + A+ Sbjct: 1 MKPVKKEPAE---VNAAALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEA 57 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 P+L S + P ++G + +V H +P LSL+ +++ E F RI + Sbjct: 58 DHPELVTS---DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKN 114 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SL 179 DD + F E K+DG +++ YE G V AA RGDG +GE++++ IR + IP L Sbjct: 115 GDD--LTFCCELKLDGLAVSLLYENGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGD 172 Query: 180 NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNF 238 NIP +EVRGEV++ + F LN+E G K +ANPRNAA+G LR+L+P R L F Sbjct: 173 NIPRRVEVRGEVFMKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTF 232 Query: 239 FVHGLGKTSE-IFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPY 297 F +G+G +E L + + G PV++ ++ ++ +Y +++ RS+L + Sbjct: 233 FCYGVGLLEGGELPASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGF 292 Query: 298 DIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVAR 357 DIDG+V KVD LQ++LG AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVAR Sbjct: 293 DIDGVVVKVDSLELQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVAR 352 Query: 358 LEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDII 417 LEPV + G +++NATLHN D I+ L +++GDRV+V+RAG+VIP++V I+ Sbjct: 353 LEPVAVAGVIVSNATLHNADEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIV 401 Query: 418 VNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVS 477 +ER +P FP+ CP+C S V R A RCTGGL C AQ+ E LKHFVS Sbjct: 402 ESERPETVRPIVFPAACPVCGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVS 455 Query: 478 RDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTN 537 R A ++EG+G + +D + E ++ PAD+F L T ++ G S TN Sbjct: 456 RRALDVEGMGDKIIDQLVEKE----YVKTPADLFRLSAGIMTGLDRM------GPKSATN 505 Query: 538 LYDSINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLS 597 L +++ K ++ +L RF+++LGIR VG A +LA ++ S + D + Sbjct: 506 LVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGSLEALFAA----------DEDA 555 Query: 598 LIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKK 651 L+ VP VG ++A + F + N + L +I E + + S K Sbjct: 556 LLEVPDVGKVVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNAEEIDSPFAGKT 615 Query: 652 LVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNE 711 +V TG+L + R +A++ +T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E Sbjct: 616 VVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDE 675 Query: 712 EQFLFLL 718 + + LL Sbjct: 676 AEMIRLL 682 >gi|91784125|ref|YP_559331.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400] gi|123358676|sp|Q13XB0|DNLJ_BURXL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|91688079|gb|ABE31279.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400] Length = 688 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 259/722 (35%), Positives = 394/722 (54%), Gaps = 49/722 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P+ + + + L E+ + YY +P + D+EYD L + ++I PDL Sbjct: 4 TPVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLI 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS- 125 P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 64 V---PDSPTQRVGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPP 120 Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IP 182 + + E K DG I++RY G FV A+ RGDG +GE+V+ +R I +IP L +P Sbjct: 121 VPVEYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVP 180 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241 +++VRGEV + K DF LN+ A +K +ANPRNAA+G LR+L+ R L+FF + Sbjct: 181 HVLDVRGEVLMFKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFSY 240 Query: 242 GLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G+G + E+L + LG PVN + G++ +++ + R LPYDID Sbjct: 241 GIGVLEGMDMPATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDID 300 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKV+ Q+ LG +R+PR+ ++HKF ++A TRL+ ID+Q+GRTG +TPVARLEP Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAVTPVARLEP 360 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ Sbjct: 361 VFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDR 409 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R DA+ F P+ CP+C S + R + A RCTGGL C AQ+ + L HF R A Sbjct: 410 RPDDAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRA 463 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+GLG++ +D + +R PAD+F L + + F + S NL D Sbjct: 464 LDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLD 513 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 S+ K ++ +L RFI++LGIRHVG A+ LAK++ S +L+ Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDA----------SVEALLE 563 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 V VG ++A++I +F+ N +E A + P K + K +V TGT Sbjct: 564 VNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPKAPQGVLAGKTVVLTGT 623 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L + R +A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ L Sbjct: 624 LPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 683 Query: 718 LQ 719 L+ Sbjct: 684 LE 685 >gi|114319842|ref|YP_741525.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1] gi|122312282|sp|Q0AAV2|DNLJ_ALHEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|114226236|gb|ABI56035.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1] Length = 673 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 256/708 (36%), Positives = 392/708 (55%), Gaps = 47/708 (6%) Query: 18 RKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNK 77 + + +L +EI HD YY P+I D+EYDAL A+ P+L P+ P + Sbjct: 9 QARIEALRREIREHDHRYYVLDAPVIADAEYDALMAELQALEAEHPELI---TPDSPSQR 65 Query: 78 IGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGT 137 + G +VTH+ P LSL+ + DL +F R+ + + + + EPK+DG Sbjct: 66 VAGRPAEGFGEVTHAEPMLSLDNAFEEADLAEFDRRVRQALGL---DPVVYVAEPKLDGL 122 Query: 138 MITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKN 196 ++IRYE G+ V A RGDG GE ++ +R I ++P L P ++EVRGEV I + Sbjct: 123 SVSIRYEDGRLVRAGTRGDGRVGEAITENVRTIRSVPLRLRGEGWPPVMEVRGEVVIRRA 182 Query: 197 DFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRY-LNFFVHGLGKTSEIFAKGQY 255 DF LN++ +A G +P+ANPRNAA+G LR+L+P R L FF G+ A + Sbjct: 183 DFERLNEQRLADGERPFANPRNAAAGSLRQLDPRITARRRLTFFTFGVAAA-GRLAASHH 241 Query: 256 EMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQL 315 E+L K+ GF VN V + G YY + + R L ++IDG+VYKVD+ +++L Sbjct: 242 EVLDKLAGWGFRVNERVERVRGLDGCREYYQRLLADRDELSFEIDGVVYKVDDLDAREEL 301 Query: 316 GERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHN 375 G AR+PRW I+ K ++A+T + I +GRTG +TPVA LEPV +GG ++ ATLHN Sbjct: 302 GFTARAPRWAIAWKLPAQEATTVVRRILPSVGRTGAITPVAELEPVGVGGVTVSRATLHN 361 Query: 376 EDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCP 435 D ++ +D+R GD V+V+RAG+VIP++ ++ +R A+P++ P+ CP Sbjct: 362 LDEVRR-----------KDVRKGDTVMVRRAGDVIPEITAVVTEKRPEGAEPWAMPAECP 410 Query: 436 ICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFF 495 +C S V+R + A HRC GGL C AQ+ L HF SR A +I+GLG++ + Sbjct: 411 VCGSEVLRLDDE------AVHRCMGGLYCPAQREGALLHFASRKALDIDGLGEKVVSQLV 464 Query: 496 KSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIF 555 + +R PAD+FTL+ Q ++ GD S NL +++K R +L RF++ Sbjct: 465 ERGM----VRSPADLFTLEHCQLAGLERM------GDKSADNLVAALDKARRTTLPRFLY 514 Query: 556 SLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 +LGI+HVG AR LA+++ S + + +A P VG ++AQAI F Sbjct: 515 ALGIQHVGEVTARRLAEHFGSLEAIMNADESALAET----------PDVGPVVAQAIAHF 564 Query: 616 YQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLG 674 + P N V+AL V+ + + + V TGTL + R +A+ + LG Sbjct: 565 FAEPHNREVVQALRAAGVTWEEVDPAERGEQPLAGRTFVLTGTLSGMTRDEAKAALEALG 624 Query: 675 AVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 A VS +S+KTD ++ G+ GSKL KA+ LGV++++E+ LLQ++ Sbjct: 625 ARVSGSVSKKTDYLVAGEKAGSKLAKAESLGVEVLDEQALQALLQEHG 672 >gi|254440003|ref|ZP_05053497.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307] gi|198255449|gb|EDY79763.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307] Length = 706 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 294/715 (41%), Positives = 434/715 (60%), Gaps = 15/715 (2%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 IE L+ ++A +EL+ L ++ + Y+Q P I D++YDALK R I F DL Sbjct: 5 TSIENLTKDEAAQELARLSALLAQANAEYHQADAPRIPDADYDALKLRNAMIEARFSDLK 64 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSI 126 R + P +G KV H++ LSL + +D+ +F + +F + + Sbjct: 65 RR---DSPSETVGATPADGFGKVPHALRMLSLGNAFTDDDVTEFDKSVRKFLGL-ETGDL 120 Query: 127 FFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIE 186 FT EPKIDG +++RYE GK V AA RGDG GE+V+A R I +P+VL L+ P+I+E Sbjct: 121 AFTAEPKIDGLSLSLRYENGKLVQAATRGDGAVGENVTANARTIKDVPQVL-LDAPKILE 179 Query: 187 VRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGK 245 VRGEVY+S +DF ALN VG K +ANPRNAA+G LR+L+ + +R L FF + G+ Sbjct: 180 VRGEVYMSHSDFAALNTRQSNVGSKTFANPRNAAAGSLRQLDASITKSRPLKFFAYAWGE 239 Query: 246 TSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 S A Q + +++ LGF N + + ++++Y +++ R+TL YDIDG+VYK Sbjct: 240 VSAPLADTQSGAIARLKTLGFQTNPLTKICASPSEMIAHYRDIEMQRATLGYDIDGVVYK 299 Query: 306 VDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGG 365 VD+ SLQ++LG R+ +PRW I+HKF + A T L IDIQ+GRTG L+PVARL PV +GG Sbjct: 300 VDDLSLQRRLGFRSTTPRWAIAHKFPAELAWTTLDAIDIQVGRTGALSPVARLSPVTVGG 359 Query: 366 ALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDA 425 ++ NATLHNEDYI G G +RGG+DIRVGD V + RAG+VIPKV D+ +++R + Sbjct: 360 VVVANATLHNEDYIAGRGNKGDDIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSKRLGET 419 Query: 426 QPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEG 485 PF FP+ CP C S VR+ + RCTGGL C AQ +E+LKHFVSR AF+I+G Sbjct: 420 APFDFPTTCPKCGSDAVRE------EGDVVRRCTGGLICPAQAVEKLKHFVSRAAFDIDG 473 Query: 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKR 545 LG +Q++ F+ + +++ PADIFTL R S TK+ N G+GD SV L+ +++++ Sbjct: 474 LGAKQIEAFYNDDQ--LAVKEPADIFTLGARDMGSLTKLANRDGWGDTSVKKLWQAVDEK 531 Query: 546 RNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVG 605 R I + R IF+LGIRHVG + LA +Y ++ F + W L+ + VG Sbjct: 532 REIPVARLIFALGIRHVGENASNLLAIHYGTWSTFEDAMTQASVGEGAGWDDLLGIDGVG 591 Query: 606 DIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHK 665 ++A ++V + +++ L+ ++ P +S + K +VFTG+L+K+ R + Sbjct: 592 AVMAASVVTTFHQSAERASIDRLVAQLRPQDSARP-RSNSPVAGKTVVFTGSLEKMTRAE 650 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 A+ LGA VS +S KTD++I G GSK +KA LG++ M+E+ +L L + Sbjct: 651 AKARAESLGAKVSGSVSAKTDLLIAGPGAGSKAKKATDLGIETMDEDGWLALTKD 705 >gi|30995424|ref|NP_439257.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae Rd KW20] gi|145638086|ref|ZP_01793696.1| DNA ligase [Haemophilus influenzae PittII] gi|166214918|sp|P43813|DNLJ_HAEIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|145272415|gb|EDK12322.1| DNA ligase [Haemophilus influenzae PittII] gi|309751252|gb|ADO81236.1| NAD-dependent DNA ligase [Haemophilus influenzae R2866] Length = 670 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 248/709 (34%), Positives = 400/709 (56%), Gaps = 45/709 (6%) Query: 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNG 73 + + +L +L + + ++ Y+ P + DSEYD L + A+ P+ S + Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTS---DS 57 Query: 74 PLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPK 133 P ++G + ++ H IP LSL+ ++ + F+ RI + F EPK Sbjct: 58 PTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLP-KPLTFCCEPK 116 Query: 134 IDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP-RVLSLNIPEIIEVRGEVY 192 +DG ++I Y G+ AA RGDG +GED++A IR I +P ++L+ N P +EVRGEV+ Sbjct: 117 LDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVF 176 Query: 193 ISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVHGLGKTSEI-F 250 + F LN + K +ANPRNAA+G LR+L+P + R L +G+G + Sbjct: 177 MPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL 236 Query: 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFS 310 Y LQ ++ +G PVN +R N ++ +Y ++++ RS+L YDIDG V K+++ + Sbjct: 237 PTTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 296 Query: 311 LQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITN 370 LQ +LG +++PRW I++KF ++ T L D++ Q+GRTG +TPVA+LEPV + G ++N Sbjct: 297 LQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSN 356 Query: 371 ATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSF 430 ATLHN D I+ L+ I +GD V+++RAG+VIP+++ ++ R +A+P F Sbjct: 357 ATLHNGDEIERLN-----------IAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIF 405 Query: 431 PSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 P+ CP+C S+++R A RCTGGL C+AQ+ E LKHFVSR A +I+G+G + Sbjct: 406 PTNCPVCDSQIIRIEGE------AVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKL 459 Query: 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISL 550 ++ E I PAD+F L T+ T+ + G S N +S+ ++ +L Sbjct: 460 IEQLVDRE----LIHTPADLFKLD---LTTLTR---LERMGAKSAENALNSLENAKSTTL 509 Query: 551 ERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQ 610 RFIF+LGIR VG A +LA ++ + A + + L +VP VG+++A Sbjct: 510 ARFIFALGIREVGEATALNLANHFKTLD----------ALKDANLEELQQVPDVGEVVAN 559 Query: 611 AIVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEY 669 I F++ N+ VE L+ + V ++ + ++K +V TGTL ++ R++A+ Sbjct: 560 RIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKAL 619 Query: 670 VTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLL 718 + QLGA VS +S KTD +I GD GSKL KAQ+L + ++ EE+FL + Sbjct: 620 LQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFLAQI 668 >gi|296158912|ref|ZP_06841740.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1] gi|295890787|gb|EFG70577.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1] Length = 688 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 258/722 (35%), Positives = 396/722 (54%), Gaps = 49/722 (6%) Query: 7 IPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLA 66 P+ + + + L E+ + YY +P + D+EYD L + ++I PDL Sbjct: 4 TPVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLI 63 Query: 67 RSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNS- 125 P+ P ++GGE V H P LSL + ED+ F R+ K Sbjct: 64 V---PDSPTQRVGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPP 120 Query: 126 --IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN-IP 182 + + E K DG I++RY G FV A+ RGDG +GE+V+ +R I +IP L +P Sbjct: 121 VPVEYAAELKFDGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVP 180 Query: 183 EIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDIT-RYLNFFVH 241 ++++VRGEV + K DF LN+ A +K +ANPRNAA+G LR+L+ R L+FF + Sbjct: 181 QVLDVRGEVLMFKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFSY 240 Query: 242 GLGKTSEI-FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 G+G + E+L + LG PVN + G++ +++ + R LPYDID Sbjct: 241 GIGVLEGMDMPATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDID 300 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 G+VYKV+ Q+ LG +R+PR+ ++HKF ++A TRL+ ID+Q+GRTG +TPVARLEP Sbjct: 301 GVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEP 360 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 V +GGA +TNATLHNED ++ +DIR+GD V+V+RAG+VIP+VV +++ Sbjct: 361 VFVGGATVTNATLHNEDEVRR-----------KDIRIGDTVIVRRAGDVIPEVVSALLDR 409 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 R DA+ F P+ CP+C S + R + A RCTGGL C AQ+ + L HF R A Sbjct: 410 RPDDAREFVMPTHCPVCGSNIERLPDE------AIARCTGGLFCPAQRKQALWHFAQRRA 463 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 +I+GLG++ +D + +R PAD+F L + + F + S NL D Sbjct: 464 LDIDGLGEKIIDQLVEQN----LVRTPADLFNL------GFATLAELDRFAEKSAQNLLD 513 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 S+ K ++ +L RFI++LGIRHVG A+ LAK++ S + +L+ Sbjct: 514 SLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMEA----------SVEALLE 563 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVE---ALLKEVSPSIGRHEKNVSSEIENKKLVFTGT 657 V VG ++A++I +F+ N +E A + P + + K +V TGT Sbjct: 564 VNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQGVLAGKTVVLTGT 623 Query: 658 LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 L + R +A+E + GA V+ +S+KTD ++ G GSKL KA++LG+ +++E+ L Sbjct: 624 LPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMRKL 683 Query: 718 LQ 719 L+ Sbjct: 684 LE 685 >gi|261493319|ref|ZP_05989845.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310963|gb|EEY12140.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 685 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 262/707 (37%), Positives = 404/707 (57%), Gaps = 46/707 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + +++ ++ Q + ++ Y+ P + D+EYD L + P+L + P Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELI---SADSPT 73 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++G + +VTH IP LSL+ ++ EDL F+ R+ + + F EPK+D Sbjct: 74 QRVGAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQ-LEFCCEPKLD 132 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194 G ++I YE G AA RGDG +GE+++A IR I IP L + N P +EVRGEV++ Sbjct: 133 GLAVSILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMP 192 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLG--KTSEIFA 251 ++ F LN++ +A G K ++NPRNAA+G LR+L+P R L +G+G ++ + Sbjct: 193 QSGFNELNEKALAKGEKTFSNPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELP 252 Query: 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 +E LQ ++ LG PVNN +R +++YY E+++ R TL YDIDG V KV++ +L Sbjct: 253 ATHFERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIAL 312 Query: 312 QKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNA 371 Q+QLG +RS RW I++KF ++ T L ++D Q+GRTG +TPVA+LEPV + G ++NA Sbjct: 313 QEQLGFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNA 372 Query: 372 TLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFP 431 TLHN D I+ L I +GD V+++RAG+VIP++ +++ R +A+ FP Sbjct: 373 TLHNGDEIERL-----------GIVIGDTVIIRRAGDVIPQITGVVLERRPENAKKIEFP 421 Query: 432 SFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQL 491 + CPIC S V R A RCTGGL C AQ+ E LKHFVSR A +I+G+G++ + Sbjct: 422 TACPICHSAVTRVEGE------AVARCTGGLFCEAQRKEALKHFVSRKAMDIDGVGEKLI 475 Query: 492 DFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLE 551 + E I PAD+F L ++ G+ S N +SI K +N +L Sbjct: 476 EQLMARE----LIETPADLFKLDHTTLMRLERM------GEKSAQNALNSIEKAKNTTLP 525 Query: 552 RFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQA 611 RF+FSLGIR VG A +LA ++ S + Q + L V VG+++A Sbjct: 526 RFLFSLGIREVGEATALNLANHFGSLEAIRQAT----------FEQLKEVQDVGEVVANR 575 Query: 612 IVEFYQNPRNICAVEALL-KEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 IV F+Q P N+ VE L+ + V + V + +++K +V TGTL ++ R +A+ + Sbjct: 576 IVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLTQLTRDEAKALL 635 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFL 717 LG VS +S KTD +I G+ GSKL KAQ+LG++I++E+QF+ L Sbjct: 636 QSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL 682 >gi|134300185|ref|YP_001113681.1| NAD-dependent DNA ligase [Desulfotomaculum reducens MI-1] gi|190359251|sp|A4J703|DNLJ_DESRM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|134052885|gb|ABO50856.1| DNA ligase, NAD-dependent [Desulfotomaculum reducens MI-1] Length = 670 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 246/715 (34%), Positives = 386/715 (53%), Gaps = 49/715 (6%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + LS +Q++ + +L +EI++H+ YY +P I D++YD L + + P+L Sbjct: 1 MADLS-QQSKARVEALRREINHHNYQYYVLDQPTITDAQYDQLMQELLRLEERHPELV-- 57 Query: 69 EDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFF 128 P+ P ++GG++ V H IP LSL + DLR+F R+ + + + Sbjct: 58 -TPDSPTQRVGGQVQRGFSSVPHKIPMLSLGNAFGEGDLREFDRRVRSYLP---GEEVKY 113 Query: 129 TLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVR 188 +E KIDG I++ YEKG V A RGDG GED++ ++ I IP L+ +P +EVR Sbjct: 114 VVELKIDGLAISLWYEKGLLVRGATRGDGELGEDITINLKTIRAIPLRLTQEVP-FLEVR 172 Query: 189 GEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTS 247 GE Y+ K+ F+ LN+ G +ANPRNAA+G LR+L+P R L+ F++ +G Sbjct: 173 GEAYMPKDSFVRLNEAREEAGEPLFANPRNAAAGSLRQLDPKITAARNLSVFMYAIGYIE 232 Query: 248 EIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVD 307 E L ++ LG +N + + ++ + ++ ++ R LPY IDG+V KV+ Sbjct: 233 GAKPPSHAESLAWLKELGIRINPDHQVCGSIDEVIDFISQWQAKRYQLPYAIDGMVIKVN 292 Query: 308 EFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGAL 367 Q++LG +SPRW I++KF +QA + + DI I++GRTG+LTP A LEPV + G Sbjct: 293 SLEQQQRLGTTMKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTT 352 Query: 368 ITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQP 427 ++ ATLHNED I+ +DIR+GD+ LV++AG++IP++V + +R + P Sbjct: 353 VSKATLHNEDIIR-----------QKDIRIGDKALVQKAGDIIPEIVQVYPEKRTGNEVP 401 Query: 428 FSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLG 487 F P CP C + VVR AAHRCT CSA+ E + HFVSR A +I GLG Sbjct: 402 FILPVTCPECGAEVVRVAGE------AAHRCTNE-NCSAKSREGIIHFVSRSAMDIMGLG 454 Query: 488 KQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRN 547 + ++ K ++ PAD++ L+ ++ S L +I +N Sbjct: 455 EGIVNQLIK----GGLVKDPADLYDLKYEDLIRQERMGA------RSSQKLLAAIEASKN 504 Query: 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDI 607 SL + +F LGIRHVG A+ LA+ + S Q Q + + +G Sbjct: 505 NSLGQLLFGLGIRHVGERAAKILARQFGSMQALMQATAEDLTG----------ISEIGPR 554 Query: 608 IAQAIVEFYQNPRNICAVEALLKEVSPSIGRHE--KNVSSEIENKKLVFTGTLQKIQRHK 665 IA++I+E++ N +E L K + E ++ + K V TGTL+ R + Sbjct: 555 IAESIMEYFSRQENQGLIERLSKAGVNMLEEVEQTESTDQTLSGKTFVVTGTLEGFSRQE 614 Query: 666 AQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 AQ + + G VS +S+KT+ ++VG+NPGSK +KA+QLG+ I+ E+ F+ LLQQ Sbjct: 615 AQRAIEERGGKVSGSVSKKTNYVVVGENPGSKHDKARQLGITILTEQDFVKLLQQ 669 >gi|126726435|ref|ZP_01742276.1| DNA ligase [Rhodobacterales bacterium HTCC2150] gi|126704298|gb|EBA03390.1| DNA ligase [Rhodobacterales bacterium HTCC2150] Length = 705 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 295/713 (41%), Positives = 435/713 (61%), Gaps = 16/713 (2%) Query: 11 ALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSED 70 +++ +AR EL L + I+ + Y+ P I D+EYD L+R I AFPDL R+ Sbjct: 7 DMTMAEARSELKRLAKVIAAANSSYHTADAPEISDAEYDRLRRLNSEIEAAFPDLKRA-- 64 Query: 71 PNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTL 130 + P + +G E+ + KV H + LSL + ++ F+ R+ + + FT Sbjct: 65 -DSPSDNVGAEVAEAFSKVKHDVRMLSLGNAFEDTEVDDFVGRVRSYLGH--VGPLAFTA 121 Query: 131 EPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGE 190 EPKIDG +++RYE G+ V AA RGDG +GE+V+ R I IP L N P+++EVRGE Sbjct: 122 EPKIDGLSLSLRYENGELVQAATRGDGETGENVTHSARTISNIPHHL-DNAPDLLEVRGE 180 Query: 191 VYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEI 249 VY+ +DF ALN+ I G K +ANPRNAA+G LR+L+ +R L FF + G SE Sbjct: 181 VYMRHDDFAALNERQIEKGEKTFANPRNAAAGSLRQLDANITRSRPLAFFAYAWGALSEP 240 Query: 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEF 309 A Q + ++R LGF N+ + + ++++Y ++ RSTL YDIDG+VYKVD+ Sbjct: 241 LATTQLAAVNRLRSLGFQTNDLTKLCASAQELITHYKSIEEQRSTLGYDIDGVVYKVDDL 300 Query: 310 SLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALIT 369 LQ++LG R+ +PRW I+HKF + A TRL IDIQ+GRTG L+PVARL+PV +GG +++ Sbjct: 301 ELQRRLGFRSTTPRWAIAHKFPAELAWTRLRGIDIQVGRTGALSPVARLDPVTVGGVVVS 360 Query: 370 NATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS 429 NATLHNEDYI+G G+ +R G+D RVGD V V RAG+VIPK+ D+ + ER DA P+ Sbjct: 361 NATLHNEDYIQGRGNKGEEIRDGKDFRVGDWVQVYRAGDVIPKLADVNLAERPDDAAPYE 420 Query: 430 FPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 FP+ CP CQS +RD A RC+GGL C AQ +E+LKHFVSR F+I+GLG + Sbjct: 421 FPTICPECQSPAIRD------DGDAVRRCSGGLICPAQAIEKLKHFVSRGCFDIDGLGNK 474 Query: 490 QLDFFFKSEDPAFSIRIPADIFTLQ-RRQQTSTTKIENILGFGDVSVTNLYDSINKRRNI 548 Q++ FF DP ++ PADIFTLQ R +++N G+GD S L+ +I+++RNI Sbjct: 475 QVEAFF--GDPELPVKEPADIFTLQVRDADNGLKRLKNRDGWGDKSTQKLFAAIDEKRNI 532 Query: 549 SLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDII 608 L R IFSLGIRHVG A LA+++ SY F ++ +++ + LI + VG++ Sbjct: 533 PLNRLIFSLGIRHVGEAAANLLARHFSSYDKFIIAMDEATDRDSNAYQDLIAIDGVGEVF 592 Query: 609 AQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQE 668 A ++V + +++ L + ++ +S + K +VFTGTL+++ R +A+ Sbjct: 593 ANSLVTAFSATSERASIDRLTQHLNIQDVVQADTGNSAVAGKIVVFTGTLEQMSRAEAKA 652 Query: 669 YVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQY 721 GA VS +S+KTDI++ G GSK KA LG+ +++E +L L+ + Sbjct: 653 QAEAAGAKVSGSVSKKTDILVAGPGAGSKATKAAALGITVIDEAAWLALIAEE 705 >gi|50122504|ref|YP_051671.1| NAD-dependent DNA ligase LigA [Pectobacterium atrosepticum SCRI1043] gi|81644069|sp|Q6D165|DNLJ_ERWCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|49613030|emb|CAG76481.1| DNA ligase [Pectobacterium atrosepticum SCRI1043] Length = 681 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 255/713 (35%), Positives = 398/713 (55%), Gaps = 51/713 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L + + +H+ Y+ P I D EYD L + A+ P+L S + P ++G Sbjct: 7 RVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTS---DSPTQRVG 63 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + +V H +P LSL+ +++ E F RI + DD + F E K+DG + Sbjct: 64 AAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDD--LTFCCELKLDGLAV 121 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYISKNDF 198 ++ YE+G V AA RGDG +GE++++ IR + IP L NIP +EVRGEV++ F Sbjct: 122 SLLYEEGILVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEVRGEVFMKHGGF 181 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSE-IFAKGQYE 256 LN+E G K +ANPRNAA+G LR+L+P R L FF +G+G +E Sbjct: 182 EKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPASHWE 241 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 L + + G PV++ ++ ++ +Y +++ RS+L +DIDG+V KVD +LQ++LG Sbjct: 242 RLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGFDIDGVVVKVDSLALQERLG 301 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 AR+PRW ++ KF ++ T + D++ Q+GRTG +TPVARLEPV + G +++NATLHN Sbjct: 302 FVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHNA 361 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPI 436 D I+ L +++GDRV+V+RAG+VIP++V I+ +ER QP FP+ CP+ Sbjct: 362 DEIERL-----------GLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPAACPV 410 Query: 437 CQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFK 496 C S V R A RCTGGL C AQ+ E LKHFVSR A ++EG+G + +D + Sbjct: 411 CGSDVERVEGE------AVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVE 464 Query: 497 SEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFS 556 E ++ PAD+F L T ++ G S NL +++ K ++ +L RF+++ Sbjct: 465 KE----YVKTPADLFRLSAGIMTGLDRM------GPKSAMNLVNALEKAKSTTLARFLYA 514 Query: 557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFY 616 LGIR VG A +LA ++ S + D +L+ VP VG I+A + F Sbjct: 515 LGIRDVGESTAANLAAHFGSLETLFAA----------DEDALLEVPDVGKIVAAHVRHFL 564 Query: 617 QNPRNICAVEALLKEVSPSIGRHE------KNVSSEIENKKLVFTGTLQKIQRHKAQEYV 670 + N + L +I E + + S K +V TG+L + R +A++ + Sbjct: 565 EEEHNQTVIRELTDPAGINIYWPEVKVVNAEEIDSPFAGKTVVLTGSLSILSRDEAKDRL 624 Query: 671 TQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNT 723 T LGA VS +S+KTD++I G+ GSKL KAQ+LG+ +++E + + LL + Sbjct: 625 TALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRLLNNHGD 677 >gi|253999028|ref|YP_003051091.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4] gi|253985707|gb|ACT50564.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4] Length = 699 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 262/719 (36%), Positives = 386/719 (53%), Gaps = 54/719 (7%) Query: 20 ELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIG 79 ++ L ++I+ ++ YY P + DSEYD L R A+ HA P+L P+ P ++G Sbjct: 27 QIRQLREQINLYNYQYYVLDDPSVPDSEYDRLFRELQALEHAHPELL---TPDSPTQRVG 83 Query: 80 GEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMI 139 + V H LSL + +L F RI + + +EPK DG I Sbjct: 84 ASPLKAFASVQHRQAMLSLNNAFEEGELTAFDKRIRDALG---IAQVEYAVEPKFDGLAI 140 Query: 140 TIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS-LNIPEIIEVRGEVYISKNDF 198 T+ YE G FV A RGDG++GEDVS+ +R I IP L N P +IEVRGEV + K DF Sbjct: 141 TLTYENGLFVQGATRGDGYTGEDVSSNLRTIRAIPMRLPVENPPALIEVRGEVLMLKRDF 200 Query: 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AKGQYE 256 LN + G K +ANPRNAA+G LR+L+P TR L FF +GLG + Sbjct: 201 DKLNRQQAERGEKLFANPRNAAAGSLRQLDPAITATRPLMFFAYGLGIAEGVPQLSTHAA 260 Query: 257 MLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLG 316 + + L PV++ G++ YY + + R LP+DIDG+VYKV+ + Q +LG Sbjct: 261 AMDYLASLRLPVSDQRDTVQGLAGLLDYYTRIGAARPNLPFDIDGVVYKVNSIAQQNELG 320 Query: 317 ERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNE 376 +R+PRW ++HKF ++A T + ID+Q+GRTG +TPVARL+PV +GG +TNATLHN+ Sbjct: 321 FVSRAPRWAVAHKFPAQEALTEIQAIDVQVGRTGAITPVARLKPVFVGGVTVTNATLHNQ 380 Query: 377 DYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFS----FPS 432 D I +D+RVGD V V+RAG+VIP+VV +++ +R D + Sbjct: 381 DEIDR-----------KDVRVGDTVSVRRAGDVIPEVVAVVLEKRPADTVAYRLLEAINH 429 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S V+R + A RCTGGL CSAQ+ + + HF SR A +IEGLG++ +D Sbjct: 430 QCPVCGSHVIRQEDE------AVARCTGGLFCSAQRKQAVLHFASRRAIDIEGLGEKLVD 483 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 I ADI+ L +S ++ + S N+ +++ + +L R Sbjct: 484 QLVD----GAHIHTLADIYRLDLATLSSLDRMA------EKSAKNIIKALDASKATTLAR 533 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 FI++LGIR+VG A+ LA+Y+ S Q D L +VP VG I+A++I Sbjct: 534 FIYALGIRNVGEATAKDLARYFGSLQALLAA----------DIEQLQQVPDVGPIVAESI 583 Query: 613 VEFYQNPRNICAVEALLKE-VSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVT 671 +F P N ++ L + + + K LV TGTL + R +A+ + Sbjct: 584 RQFLSEPHNQQVIQDLQDVGLHWTESDGAGTQQGVLTGKTLVLTGTLPTMSRDQAKALIE 643 Query: 672 QLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYNTTLRIHDD 730 G V+ +S+KTD ++ G+ GSKL KAQ+LGV +++E L LL+ ++ HDD Sbjct: 644 AAGGKVAGSVSKKTDFVVAGEEAGSKLTKAQELGVAVLDENGLLALLEDKQSS---HDD 699 >gi|254489942|ref|ZP_05103137.1| DNA ligase, NAD-dependent [Methylophaga thiooxidans DMS010] gi|224465027|gb|EEF81281.1| DNA ligase, NAD-dependent [Methylophaga thiooxydans DMS010] Length = 673 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 246/710 (34%), Positives = 391/710 (55%), Gaps = 45/710 (6%) Query: 16 QARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPL 75 + ++ ++L + I++++ YY P + D+EYD L + P+L + + P Sbjct: 6 EVQQRAATLRELINHYNYLYYVTDNPEVPDAEYDRLFSELQQLEQTHPELLTA---DSPT 62 Query: 76 NKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKID 135 ++GGE+ ++ H++P LSL+ +++ E L F R+ + D + EPK+D Sbjct: 63 QRVGGEVLDKFAEIEHAMPMLSLDNVFDQEALTAFDKRVRDWLNT--DQPQIYAAEPKLD 120 Query: 136 GTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL-SLNIPEIIEVRGEVYIS 194 G I+IRYE+G V AA RGDG+ GEDV+A +R I ++P L NIP I+EVRGE+++ Sbjct: 121 GLAISIRYEQGVLVQAATRGDGNYGEDVTANVRTIKSVPLKLSGDNIPAIVEVRGEIFMP 180 Query: 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPT-DITRYLNFFVHGLGKTSEIF-AK 252 K+ F LN + +K + NPRNAA+G LR+L+ TR L + +G+G Sbjct: 181 KDGFERLNQSQLDNNKKVFVNPRNAAAGSLRQLDSKITATRPLEIYCYGIGYIEGAARPA 240 Query: 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQ 312 E + + G ++ +++ Y ++ R +L YDIDG+V KVD +LQ Sbjct: 241 SHTEAMSMIANWGCRISPELKKLEGLEACHRYIEQLGERRDSLAYDIDGVVLKVDNTALQ 300 Query: 313 KQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNAT 372 ++LG +R+PRW I++KF ++ T + DI+IQ+GRTG LTPVARL+PV +GG ++NAT Sbjct: 301 ERLGFVSRAPRWAIAYKFPAQEEMTTIEDIEIQVGRTGALTPVARLKPVFVGGVTVSNAT 360 Query: 373 LHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPS 432 LHNED I+ +D+R+GD+V+V+RAG+VIP+VV +I+++R + F P+ Sbjct: 361 LHNEDEIRR-----------KDVRIGDQVIVRRAGDVIPEVVKVILSKRTDTVREFVMPT 409 Query: 433 FCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLD 492 CP+C S V R+ A RC+GGL C AQ+ E +KHF SR A +++GLG + ++ Sbjct: 410 QCPVCGSDVEREAGE------AVSRCSGGLFCPAQRKEAIKHFASRKALDVDGLGDKLVE 463 Query: 493 FFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLER 552 +E I+ AD+F L Q ++ S NL +I + R Sbjct: 464 QMVDAE----LIKDAADLFVLTVEQLAGLERMGQ------KSADNLVRAIKASKQTRFPR 513 Query: 553 FIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAI 612 F+++LGIR VG ARSLA ++ A D +L+ + VG I+A I Sbjct: 514 FLYALGIREVGEATARSLAMHFADLD----------ALKAADSEALVEIEDVGPIVAHHI 563 Query: 613 VEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQ 672 F+Q P N+ + L+ + + S + K +V TGTL ++ R +A+E + Sbjct: 564 ETFFQQPHNLEVINRLIDVGVSWPQEEKSHSDSALSGKTIVLTGTLVQMSRSEAKEKLLA 623 Query: 673 LGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQYN 722 LGA V+ +S+KTD ++ G + GSKL KA L + +++E L L+Q Sbjct: 624 LGAKVAGSVSKKTDYVVAGADAGSKLTKAASLDISVVDEAMLLEWLKQEK 673 >gi|254508455|ref|ZP_05120575.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16] gi|219548665|gb|EED25670.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16] Length = 669 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities =